Query 003423
Match_columns 821
No_of_seqs 640 out of 4436
Neff 10.7
Searched_HMMs 29240
Date Tue Mar 26 00:41:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003423.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003423hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 4.2E-53 1.4E-57 483.2 62.2 528 3-669 38-609 (611)
2 2ymu_A WD-40 repeat protein; u 100.0 1.1E-52 3.7E-57 479.1 64.8 519 16-720 15-577 (577)
3 1nr0_A Actin interacting prote 100.0 1.3E-51 4.4E-56 470.9 63.9 549 8-721 9-609 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 4.7E-51 1.6E-55 465.5 61.5 507 2-668 36-577 (577)
5 1pgu_A Actin interacting prote 100.0 2.6E-47 8.9E-52 438.4 60.5 544 7-723 8-614 (615)
6 3sfz_A APAF-1, apoptotic pepti 100.0 9.3E-47 3.2E-51 469.2 57.4 621 16-766 614-1247(1249)
7 1pgu_A Actin interacting prote 100.0 3.4E-46 1.2E-50 429.1 55.7 519 3-671 38-614 (615)
8 3sfz_A APAF-1, apoptotic pepti 100.0 3.5E-46 1.2E-50 464.1 54.9 550 2-722 635-1248(1249)
9 2oaj_A Protein SNI1; WD40 repe 100.0 2.8E-42 9.7E-47 407.5 66.3 656 15-805 15-853 (902)
10 2oaj_A Protein SNI1; WD40 repe 100.0 1.1E-40 3.8E-45 393.9 59.1 571 129-766 14-781 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 3E-38 1E-42 375.4 47.0 462 16-668 12-502 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 1.3E-36 4.6E-41 361.2 51.0 471 56-720 5-502 (814)
13 1vyh_C Platelet-activating fac 100.0 4.3E-37 1.5E-41 332.7 37.4 279 16-377 107-409 (410)
14 1vyh_C Platelet-activating fac 100.0 3.5E-36 1.2E-40 325.6 36.8 203 125-378 101-326 (410)
15 1got_B GT-beta; complex (GTP-b 100.0 1.4E-35 5E-40 312.4 40.5 283 16-376 54-340 (340)
16 3ow8_A WD repeat-containing pr 100.0 2.1E-35 7.2E-40 307.8 40.6 293 122-610 22-320 (321)
17 1got_B GT-beta; complex (GTP-b 100.0 2.8E-35 9.5E-40 310.3 41.9 293 122-608 45-340 (340)
18 3ow8_A WD repeat-containing pr 100.0 7.5E-36 2.6E-40 311.2 36.6 284 15-377 30-319 (321)
19 4gqb_B Methylosome protein 50; 100.0 1.6E-35 5.4E-40 311.0 36.6 294 5-379 15-331 (344)
20 2pbi_B Guanine nucleotide-bind 100.0 7.4E-35 2.5E-39 308.4 40.9 296 122-608 54-354 (354)
21 2pbi_B Guanine nucleotide-bind 100.0 4.1E-35 1.4E-39 310.4 37.9 286 16-376 63-354 (354)
22 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.4E-34 8.3E-39 303.6 42.2 211 122-377 5-223 (345)
23 2ynn_A Coatomer subunit beta'; 100.0 1.6E-34 5.5E-39 299.2 39.4 279 16-378 12-301 (304)
24 3iz6_a 40S ribosomal protein R 100.0 1.5E-35 5.1E-40 317.5 30.9 301 6-379 48-375 (380)
25 4g56_B MGC81050 protein; prote 100.0 7.9E-35 2.7E-39 308.4 35.0 297 3-379 25-343 (357)
26 1erj_A Transcriptional repress 100.0 3E-34 1E-38 308.8 39.1 289 16-379 63-389 (393)
27 2ynn_A Coatomer subunit beta'; 100.0 1.7E-33 6E-38 291.4 41.9 287 55-446 4-299 (304)
28 3iz6_a 40S ribosomal protein R 100.0 5.1E-35 1.7E-39 313.3 28.5 219 122-379 56-280 (380)
29 4g56_B MGC81050 protein; prote 100.0 1.6E-34 5.5E-39 306.1 31.8 292 253-672 39-344 (357)
30 3frx_A Guanine nucleotide-bind 100.0 1.5E-33 5E-38 294.1 38.6 289 122-503 7-317 (319)
31 2hes_X YDR267CP; beta-propelle 100.0 1.4E-33 4.8E-38 295.7 38.3 297 16-378 13-327 (330)
32 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.9E-33 6.6E-38 296.7 39.5 294 16-379 14-335 (345)
33 4ery_A WD repeat-containing pr 100.0 2E-32 6.9E-37 285.0 44.4 207 122-378 13-222 (312)
34 3frx_A Guanine nucleotide-bind 100.0 3.8E-33 1.3E-37 290.9 38.2 281 16-378 16-316 (319)
35 1erj_A Transcriptional repress 100.0 3.9E-33 1.3E-37 300.1 38.2 198 130-379 62-287 (393)
36 1r5m_A SIR4-interacting protei 100.0 6.8E-33 2.3E-37 302.4 39.0 338 129-610 42-424 (425)
37 4ery_A WD repeat-containing pr 100.0 6.5E-33 2.2E-37 288.8 36.9 280 16-378 22-311 (312)
38 4gqb_B Methylosome protein 50; 100.0 2.7E-33 9.1E-38 294.0 32.6 266 45-379 15-289 (344)
39 2xzm_R RACK1; ribosome, transl 100.0 2.1E-32 7.3E-37 288.7 39.7 296 122-503 11-340 (343)
40 1r5m_A SIR4-interacting protei 100.0 1.3E-32 4.5E-37 300.1 39.2 348 6-447 27-423 (425)
41 2hes_X YDR267CP; beta-propelle 100.0 2.4E-32 8.2E-37 286.4 39.5 311 122-503 4-328 (330)
42 2xzm_R RACK1; ribosome, transl 100.0 1.9E-32 6.6E-37 289.0 37.4 282 16-378 20-339 (343)
43 4aow_A Guanine nucleotide-bind 100.0 1.7E-31 5.8E-36 281.8 38.5 284 16-379 37-337 (340)
44 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.1E-31 1.4E-35 290.0 42.5 324 123-611 109-442 (445)
45 1gxr_A ESG1, transducin-like e 100.0 3.7E-31 1.3E-35 278.8 39.3 323 15-447 7-335 (337)
46 1gxr_A ESG1, transducin-like e 100.0 6.5E-31 2.2E-35 276.9 40.4 279 16-377 50-335 (337)
47 3v7d_B Cell division control p 100.0 1E-30 3.5E-35 288.7 43.3 331 124-609 113-461 (464)
48 3v7d_B Cell division control p 100.0 1.3E-30 4.3E-35 288.0 43.1 314 16-447 120-460 (464)
49 3vl1_A 26S proteasome regulato 100.0 4.5E-32 1.5E-36 295.5 30.6 326 18-447 57-417 (420)
50 3i2n_A WD repeat-containing pr 100.0 4.1E-31 1.4E-35 281.0 36.0 299 15-379 16-353 (357)
51 3ei3_B DNA damage-binding prot 100.0 8.3E-31 2.8E-35 281.6 37.7 208 122-379 63-282 (383)
52 4aow_A Guanine nucleotide-bind 100.0 1.5E-30 5.3E-35 274.5 38.8 293 122-505 28-339 (340)
53 2pm9_A Protein WEB1, protein t 100.0 3.8E-32 1.3E-36 295.6 26.7 350 16-443 11-408 (416)
54 1k8k_C P40, ARP2/3 complex 41 100.0 1.6E-30 5.4E-35 278.2 37.3 302 16-379 7-361 (372)
55 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.3E-30 8E-35 284.0 38.9 285 2-379 137-442 (445)
56 3zwl_B Eukaryotic translation 100.0 2.6E-30 9E-35 276.0 38.1 280 16-379 31-346 (369)
57 2pm9_A Protein WEB1, protein t 100.0 1.8E-32 6.1E-37 298.3 21.3 307 2-379 43-414 (416)
58 3dm0_A Maltose-binding peripla 100.0 1.2E-30 4E-35 303.0 37.8 284 16-378 381-692 (694)
59 3vl1_A 26S proteasome regulato 100.0 2E-30 6.7E-35 282.5 37.0 299 2-378 76-418 (420)
60 2j04_B YDR362CP, TAU91; beta p 100.0 3.7E-32 1.3E-36 299.7 21.9 304 2-379 181-517 (524)
61 1sq9_A Antiviral protein SKI8; 100.0 2.2E-30 7.4E-35 279.9 35.4 291 16-379 15-395 (397)
62 2j04_B YDR362CP, TAU91; beta p 100.0 3.6E-31 1.2E-35 291.8 28.8 318 92-504 178-518 (524)
63 3ei3_B DNA damage-binding prot 100.0 4.1E-30 1.4E-34 276.2 34.8 287 16-379 72-382 (383)
64 3zwl_B Eukaryotic translation 100.0 6.5E-29 2.2E-33 265.2 43.6 314 122-612 22-347 (369)
65 3i2n_A WD repeat-containing pr 100.0 1.3E-29 4.4E-34 269.4 37.0 209 125-379 11-243 (357)
66 3k26_A Polycomb protein EED; W 100.0 1.3E-30 4.6E-35 278.0 29.3 326 15-378 16-365 (366)
67 4e54_B DNA damage-binding prot 100.0 6.3E-31 2.2E-35 287.2 27.2 303 123-611 110-430 (435)
68 3gre_A Serine/threonine-protei 100.0 6.4E-30 2.2E-34 280.0 34.6 340 48-500 47-437 (437)
69 3dm0_A Maltose-binding peripla 100.0 9.8E-30 3.4E-34 295.2 37.7 291 123-502 373-692 (694)
70 4h5i_A Guanine nucleotide-exch 100.0 6.9E-30 2.4E-34 271.2 31.9 296 18-379 15-343 (365)
71 3gre_A Serine/threonine-protei 100.0 3.1E-30 1.1E-34 282.5 28.6 296 16-376 62-437 (437)
72 3dwl_C Actin-related protein 2 100.0 1.6E-30 5.3E-35 278.8 24.9 303 16-377 10-377 (377)
73 4a11_B DNA excision repair pro 100.0 1.2E-29 3.9E-34 275.2 31.9 367 156-670 22-404 (408)
74 3odt_A Protein DOA1; ubiquitin 100.0 1.3E-28 4.5E-33 256.2 38.5 276 16-379 17-296 (313)
75 4gga_A P55CDC, cell division c 100.0 7.2E-29 2.5E-33 269.6 36.3 278 20-379 108-395 (420)
76 4gga_A P55CDC, cell division c 100.0 1.8E-28 6.1E-33 266.5 38.4 272 193-611 116-395 (420)
77 2pm7_B Protein transport prote 100.0 2.2E-28 7.7E-33 252.0 37.2 253 126-447 3-283 (297)
78 2pm7_B Protein transport prote 100.0 6.9E-29 2.4E-33 255.8 33.3 252 60-378 5-284 (297)
79 3k26_A Polycomb protein EED; W 100.0 8.6E-29 3E-33 263.9 34.1 299 59-446 12-363 (366)
80 1k8k_C P40, ARP2/3 complex 41 100.0 1.7E-28 5.8E-33 262.4 36.3 294 129-504 5-362 (372)
81 3dwl_C Actin-related protein 2 100.0 3.6E-30 1.2E-34 276.0 23.1 248 129-447 8-279 (377)
82 4ggc_A P55CDC, cell division c 100.0 2.6E-28 8.9E-33 254.7 36.6 277 20-378 28-314 (318)
83 2j04_A TAU60, YPL007P, hypothe 100.0 5E-30 1.7E-34 273.7 23.6 326 12-438 10-349 (588)
84 4a11_B DNA excision repair pro 100.0 4.5E-29 1.5E-33 270.5 31.6 319 3-379 22-365 (408)
85 1p22_A F-BOX/WD-repeat protein 100.0 5.4E-29 1.8E-33 272.1 32.1 269 16-379 132-414 (435)
86 4aez_A CDC20, WD repeat-contai 100.0 2.8E-28 9.5E-33 263.3 37.2 274 20-379 96-380 (401)
87 4ggc_A P55CDC, cell division c 100.0 1E-27 3.5E-32 250.2 39.0 275 191-611 35-315 (318)
88 4e54_B DNA damage-binding prot 100.0 9.3E-30 3.2E-34 277.9 23.9 287 16-379 118-430 (435)
89 4aez_A CDC20, WD repeat-contai 100.0 4.8E-28 1.7E-32 261.4 36.5 204 124-378 83-292 (401)
90 3bg1_A Protein SEC13 homolog; 100.0 3.1E-29 1.1E-33 260.9 25.0 251 64-378 12-292 (316)
91 1sq9_A Antiviral protein SKI8; 100.0 4.4E-28 1.5E-32 261.7 34.9 316 65-447 16-393 (397)
92 3odt_A Protein DOA1; ubiquitin 100.0 2E-27 6.9E-32 247.3 37.9 288 122-506 8-299 (313)
93 3bg1_A Protein SEC13 homolog; 100.0 7.2E-29 2.5E-33 258.1 24.8 259 9-335 5-291 (316)
94 1p22_A F-BOX/WD-repeat protein 100.0 2.1E-27 7E-32 259.5 36.8 198 125-378 126-324 (435)
95 4h5i_A Guanine nucleotide-exch 100.0 7.4E-28 2.5E-32 255.5 30.5 297 256-612 14-344 (365)
96 3f3f_A Nucleoporin SEH1; struc 100.0 8.3E-28 2.8E-32 254.3 30.4 299 15-379 9-337 (351)
97 3dw8_B Serine/threonine-protei 100.0 2.4E-27 8.1E-32 260.5 34.3 300 16-377 27-444 (447)
98 3mmy_A MRNA export factor; mRN 100.0 2.7E-27 9.2E-32 252.5 33.0 206 122-379 29-247 (368)
99 1yfq_A Cell cycle arrest prote 100.0 6.6E-27 2.3E-31 246.8 34.6 200 126-379 5-225 (342)
100 1yfq_A Cell cycle arrest prote 100.0 3.7E-27 1.3E-31 248.8 32.5 275 15-376 9-321 (342)
101 3mmy_A MRNA export factor; mRN 100.0 2.4E-27 8.4E-32 252.8 31.3 280 16-377 38-344 (368)
102 3dw8_B Serine/threonine-protei 100.0 8.4E-27 2.9E-31 256.1 35.0 322 64-445 27-442 (447)
103 3f3f_A Nucleoporin SEH1; struc 100.0 9.9E-27 3.4E-31 245.9 32.8 224 126-379 5-249 (351)
104 3jrp_A Fusion protein of prote 100.0 1.7E-26 5.7E-31 247.5 34.9 256 54-378 1-286 (379)
105 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.4E-26 8.2E-31 252.2 35.1 294 17-377 4-337 (450)
106 2j04_A TAU60, YPL007P, hypothe 100.0 1.9E-28 6.5E-33 261.6 16.7 319 129-600 12-350 (588)
107 1k32_A Tricorn protease; prote 100.0 2.2E-24 7.5E-29 261.4 53.5 445 4-610 1-501 (1045)
108 3vu4_A KMHSV2; beta-propeller 100.0 2.4E-26 8.1E-31 243.2 29.6 285 16-378 18-335 (355)
109 3jrp_A Fusion protein of prote 100.0 1.2E-25 4.1E-30 240.8 34.7 257 124-449 3-287 (379)
110 2aq5_A Coronin-1A; WD40 repeat 100.0 1.5E-26 5.1E-31 250.0 26.8 286 20-379 37-342 (402)
111 2w18_A PALB2, fancn, partner a 99.9 5E-26 1.7E-30 227.9 28.1 277 37-377 56-355 (356)
112 3jro_A Fusion protein of prote 99.9 3.6E-26 1.2E-30 266.5 26.9 209 126-379 3-238 (753)
113 4gq1_A NUP37; propeller, trans 99.9 2E-25 6.9E-30 239.6 30.7 308 34-378 30-388 (393)
114 2xyi_A Probable histone-bindin 99.9 2.9E-25 9.8E-30 241.8 32.0 254 64-379 127-410 (430)
115 2aq5_A Coronin-1A; WD40 repeat 99.9 4.1E-25 1.4E-29 238.7 25.7 259 2-336 55-341 (402)
116 3jro_A Fusion protein of prote 99.9 6.7E-25 2.3E-29 255.8 29.0 251 59-379 4-285 (753)
117 4gq1_A NUP37; propeller, trans 99.9 8E-25 2.7E-29 235.0 27.3 278 254-610 87-388 (393)
118 3lrv_A PRE-mRNA-splicing facto 99.9 7.6E-25 2.6E-29 230.8 25.9 272 35-378 48-332 (343)
119 2w18_A PALB2, fancn, partner a 99.9 3.6E-24 1.2E-28 214.4 28.8 284 195-609 56-355 (356)
120 3bws_A Protein LP49; two-domai 99.9 7.7E-24 2.6E-28 231.3 34.0 275 18-378 123-431 (433)
121 1k32_A Tricorn protease; prote 99.9 5.4E-23 1.9E-27 249.2 44.5 484 4-613 33-639 (1045)
122 3bws_A Protein LP49; two-domai 99.9 5.1E-23 1.8E-27 224.8 38.7 204 123-379 114-334 (433)
123 3vu4_A KMHSV2; beta-propeller 99.9 1.5E-23 5.2E-28 221.6 33.0 252 48-379 3-271 (355)
124 1l0q_A Surface layer protein; 99.9 1.1E-22 3.7E-27 218.9 38.4 261 36-379 3-275 (391)
125 3lrv_A PRE-mRNA-splicing facto 99.9 1.3E-23 4.4E-28 221.4 30.0 272 146-502 47-332 (343)
126 2xyi_A Probable histone-bindin 99.9 1.7E-23 6E-28 227.7 29.0 265 126-447 122-408 (430)
127 2vdu_B TRNA (guanine-N(7)-)-me 99.9 8.5E-23 2.9E-27 223.9 33.4 241 19-335 104-389 (450)
128 1l0q_A Surface layer protein; 99.9 3E-22 1E-26 215.4 36.2 261 1-348 9-287 (391)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.2E-21 4E-26 211.5 29.7 302 19-431 64-409 (415)
130 1nir_A Nitrite reductase; hemo 99.9 1.1E-19 3.7E-24 202.1 36.5 338 25-456 145-518 (543)
131 1nir_A Nitrite reductase; hemo 99.9 9.5E-19 3.2E-23 194.5 35.1 333 139-555 144-515 (543)
132 2hqs_A Protein TOLB; TOLB, PAL 99.8 1.1E-19 3.8E-24 195.9 26.5 243 35-360 144-409 (415)
133 2ecf_A Dipeptidyl peptidase IV 99.8 6.1E-19 2.1E-23 206.6 30.8 279 17-378 36-412 (741)
134 1xfd_A DIP, dipeptidyl aminope 99.8 3.9E-19 1.3E-23 207.7 26.0 324 6-378 5-392 (723)
135 2z3z_A Dipeptidyl aminopeptida 99.8 1.4E-17 4.6E-22 193.9 30.3 293 35-437 36-418 (706)
136 2ojh_A Uncharacterized protein 99.8 4.1E-18 1.4E-22 174.9 22.6 249 2-328 20-293 (297)
137 2z3z_A Dipeptidyl aminopeptida 99.8 2.5E-17 8.6E-22 191.7 31.3 276 18-379 82-435 (706)
138 2ojh_A Uncharacterized protein 99.8 3.1E-17 1.1E-21 168.3 27.5 249 42-370 20-293 (297)
139 1ri6_A Putative isomerase YBHE 99.8 9.4E-17 3.2E-21 168.8 31.5 274 37-378 7-307 (343)
140 3u4y_A Uncharacterized protein 99.8 1E-16 3.5E-21 167.7 31.2 275 35-380 10-305 (331)
141 3vgz_A Uncharacterized protein 99.8 3.6E-16 1.2E-20 165.1 35.1 267 17-370 40-335 (353)
142 2ecf_A Dipeptidyl peptidase IV 99.8 2E-17 6.9E-22 193.7 26.9 277 19-380 110-460 (741)
143 1ri6_A Putative isomerase YBHE 99.8 1.7E-16 5.9E-21 166.8 31.5 285 2-361 13-335 (343)
144 1pby_B Quinohemoprotein amine 99.8 1.6E-16 5.5E-21 166.5 26.9 261 37-379 3-310 (337)
145 3hfq_A Uncharacterized protein 99.7 2.6E-15 8.8E-20 158.1 34.6 269 43-378 15-316 (347)
146 1pby_B Quinohemoprotein amine 99.7 1.5E-16 5.1E-21 166.8 23.6 258 2-347 9-321 (337)
147 3o4h_A Acylamino-acid-releasin 99.7 4.1E-16 1.4E-20 176.8 27.8 267 16-378 20-314 (582)
148 1xfd_A DIP, dipeptidyl aminope 99.7 1.9E-16 6.4E-21 185.0 25.0 283 2-368 35-429 (723)
149 2oit_A Nucleoporin 214KDA; NH2 99.7 1.7E-15 5.6E-20 163.7 28.9 208 133-379 37-278 (434)
150 3hfq_A Uncharacterized protein 99.7 1.7E-14 5.7E-19 151.9 35.5 262 3-335 15-315 (347)
151 3vgz_A Uncharacterized protein 99.7 3.7E-15 1.2E-19 157.3 29.8 240 66-379 41-303 (353)
152 2oit_A Nucleoporin 214KDA; NH2 99.7 2.9E-15 1E-19 161.8 29.4 159 254-438 90-259 (434)
153 3u4y_A Uncharacterized protein 99.7 1.9E-14 6.5E-19 150.3 32.0 272 147-504 10-305 (331)
154 3o4h_A Acylamino-acid-releasin 99.7 3.8E-15 1.3E-19 168.8 27.8 233 63-377 19-274 (582)
155 1z68_A Fibroblast activation p 99.7 8.7E-16 3E-20 179.0 21.4 308 21-378 19-390 (719)
156 3scy_A Hypothetical bacterial 99.7 1.5E-13 5.2E-18 145.4 35.7 275 43-378 26-336 (361)
157 1z68_A Fibroblast activation p 99.6 4.4E-15 1.5E-19 173.0 21.2 301 2-378 34-442 (719)
158 3scy_A Hypothetical bacterial 99.6 4.7E-13 1.6E-17 141.6 34.5 281 3-357 26-360 (361)
159 1jmx_B Amine dehydrogenase; ox 99.6 2.9E-14 9.8E-19 150.1 23.1 263 35-346 11-335 (349)
160 4a5s_A Dipeptidyl peptidase 4 99.6 8.8E-14 3E-18 162.0 27.4 326 4-377 3-396 (740)
161 1jmx_B Amine dehydrogenase; ox 99.6 2.1E-13 7.2E-18 143.4 26.2 266 138-505 5-327 (349)
162 1jof_A Carboxy-CIS,CIS-muconat 99.6 1.3E-12 4.3E-17 138.3 29.7 269 44-379 14-341 (365)
163 1jof_A Carboxy-CIS,CIS-muconat 99.6 5.6E-13 1.9E-17 141.1 25.8 254 19-339 41-343 (365)
164 3pe7_A Oligogalacturonate lyas 99.5 1.1E-12 3.8E-17 140.3 24.6 260 45-380 11-330 (388)
165 1q7f_A NHL, brain tumor CG1071 99.5 7.7E-12 2.6E-16 127.3 29.4 233 67-379 31-280 (286)
166 2oiz_A Aromatic amine dehydrog 99.5 4.5E-12 1.5E-16 133.3 27.4 258 43-379 30-334 (361)
167 1q7f_A NHL, brain tumor CG1071 99.5 1.9E-11 6.6E-16 124.4 29.9 239 130-447 27-278 (286)
168 3azo_A Aminopeptidase; POP fam 99.5 5.6E-12 1.9E-16 145.3 28.2 285 16-377 22-365 (662)
169 2oiz_A Aromatic amine dehydrog 99.5 1.6E-11 5.4E-16 129.2 28.5 271 3-361 30-360 (361)
170 4a5s_A Dipeptidyl peptidase 4 99.5 1.8E-11 6.1E-16 142.5 30.5 309 3-378 35-448 (740)
171 3pe7_A Oligogalacturonate lyas 99.5 6.8E-12 2.3E-16 134.1 24.3 273 23-377 41-380 (388)
172 3fvz_A Peptidyl-glycine alpha- 99.4 1.2E-11 4.2E-16 128.5 24.0 246 16-337 22-322 (329)
173 3fvz_A Peptidyl-glycine alpha- 99.4 1.4E-10 5E-15 120.4 29.3 201 130-379 88-322 (329)
174 3dsm_A Uncharacterized protein 99.4 3.1E-10 1E-14 117.7 31.1 267 2-357 15-320 (328)
175 2z2n_A Virginiamycin B lyase; 99.4 1.1E-09 3.8E-14 111.9 35.0 276 17-379 14-295 (299)
176 2dg1_A DRP35, lactonase; beta 99.4 1.8E-10 6.1E-15 120.1 28.8 272 18-370 6-301 (333)
177 3azo_A Aminopeptidase; POP fam 99.4 1.4E-10 4.7E-15 133.6 30.5 243 67-377 25-321 (662)
178 3c5m_A Oligogalacturonate lyas 99.4 1.1E-11 3.7E-16 132.9 17.9 271 20-377 38-380 (396)
179 2gop_A Trilobed protease; beta 99.4 1.1E-10 3.7E-15 122.6 25.0 248 3-348 42-341 (347)
180 3c5m_A Oligogalacturonate lyas 99.4 5.8E-11 2E-15 127.2 23.2 259 45-380 11-330 (396)
181 3dsm_A Uncharacterized protein 99.3 1.8E-10 6E-15 119.5 25.5 260 43-382 16-305 (328)
182 2gop_A Trilobed protease; beta 99.3 4.8E-10 1.6E-14 117.5 29.3 241 43-378 42-330 (347)
183 2z2n_A Virginiamycin B lyase; 99.3 9.3E-09 3.2E-13 105.0 36.9 273 66-446 15-292 (299)
184 1qks_A Cytochrome CD1 nitrite 99.3 1.1E-08 3.8E-13 113.0 39.4 272 36-379 168-477 (567)
185 2dg1_A DRP35, lactonase; beta 99.3 5.2E-10 1.8E-14 116.5 27.1 202 125-379 37-263 (333)
186 3e5z_A Putative gluconolactona 99.3 8E-10 2.7E-14 112.9 25.7 234 67-379 29-286 (296)
187 1qks_A Cytochrome CD1 nitrite 99.3 1E-08 3.5E-13 113.4 35.4 334 146-555 166-539 (567)
188 3e5z_A Putative gluconolactona 99.2 1.4E-09 4.8E-14 111.0 25.2 199 125-380 20-247 (296)
189 3no2_A Uncharacterized protein 99.2 1.7E-09 5.9E-14 108.5 25.0 209 89-367 7-231 (276)
190 2qc5_A Streptogramin B lactona 99.2 1.9E-08 6.4E-13 102.7 33.2 273 18-377 20-298 (300)
191 3no2_A Uncharacterized protein 99.2 3.4E-09 1.2E-13 106.3 26.1 224 146-440 4-233 (276)
192 2qc5_A Streptogramin B lactona 99.2 6.5E-08 2.2E-12 98.6 34.1 271 66-444 20-295 (300)
193 1rwi_B Serine/threonine-protei 99.2 3.2E-09 1.1E-13 106.7 23.3 236 67-379 25-264 (270)
194 2xdw_A Prolyl endopeptidase; a 99.2 7.6E-09 2.6E-13 119.7 29.2 241 18-336 125-413 (710)
195 4a2l_A BT_4663, two-component 99.2 1.1E-05 3.8E-10 94.4 55.4 464 7-610 32-525 (795)
196 2xdw_A Prolyl endopeptidase; a 99.1 8.8E-09 3E-13 119.2 28.4 200 130-376 122-363 (710)
197 2bkl_A Prolyl endopeptidase; m 99.1 2.8E-09 9.7E-14 122.9 24.0 198 130-378 118-348 (695)
198 4a2l_A BT_4663, two-component 99.1 3.1E-05 1.1E-09 90.6 57.8 443 20-610 133-613 (795)
199 1xip_A Nucleoporin NUP159; bet 99.1 2E-09 6.7E-14 111.8 17.8 171 134-367 39-232 (388)
200 1rwi_B Serine/threonine-protei 99.1 1.9E-08 6.7E-13 100.9 23.8 230 134-445 25-260 (270)
201 2mad_H Methylamine dehydrogena 99.1 4.1E-07 1.4E-11 95.4 34.0 260 45-379 48-350 (373)
202 2bkl_A Prolyl endopeptidase; m 99.0 1E-08 3.5E-13 118.2 22.6 250 18-346 121-406 (695)
203 3sjl_D Methylamine dehydrogena 99.0 8.7E-08 3E-12 99.0 26.8 258 43-379 58-363 (386)
204 1pjx_A Dfpase, DIISOPROPYLFLUO 99.0 2.3E-07 7.7E-12 95.4 27.7 223 94-379 43-299 (314)
205 1pjx_A Dfpase, DIISOPROPYLFLUO 99.0 5.4E-07 1.9E-11 92.5 29.7 243 19-336 19-298 (314)
206 1xip_A Nucleoporin NUP159; bet 99.0 1.5E-08 5.2E-13 105.1 17.7 173 18-275 38-232 (388)
207 1yr2_A Prolyl oligopeptidase; 99.0 1.9E-07 6.6E-12 108.4 29.1 198 131-378 161-392 (741)
208 3hrp_A Uncharacterized protein 99.0 2.2E-07 7.7E-12 98.9 27.0 252 133-445 131-406 (409)
209 3c75_H MADH, methylamine dehyd 98.9 1.2E-07 4.1E-12 99.9 24.0 261 44-379 99-402 (426)
210 3q7m_A Lipoprotein YFGL, BAMB; 98.9 8.8E-07 3E-11 93.7 30.3 261 35-379 54-337 (376)
211 1yr2_A Prolyl oligopeptidase; 98.9 1.1E-07 3.9E-12 110.3 25.4 247 18-344 163-448 (741)
212 2mad_H Methylamine dehydrogena 98.9 5.4E-06 1.9E-10 86.8 34.5 184 146-379 31-243 (373)
213 3sjl_D Methylamine dehydrogena 98.9 7.3E-07 2.5E-11 92.1 26.8 273 3-359 58-384 (386)
214 3hrp_A Uncharacterized protein 98.9 5E-07 1.7E-11 96.2 26.7 236 17-335 130-408 (409)
215 3g4e_A Regucalcin; six bladed 98.9 1.3E-06 4.6E-11 88.7 28.7 210 95-368 33-261 (297)
216 3ei3_A DNA damage-binding prot 98.8 0.00085 2.9E-08 80.3 60.5 507 44-668 492-1059(1158)
217 2qe8_A Uncharacterized protein 98.8 1.4E-06 4.9E-11 90.6 25.8 270 66-372 17-314 (343)
218 3g4e_A Regucalcin; six bladed 98.8 4.9E-06 1.7E-10 84.5 28.8 220 21-317 16-249 (297)
219 2ghs_A AGR_C_1268P; regucalcin 98.8 1E-05 3.4E-10 83.4 31.5 208 95-369 69-292 (326)
220 3q7m_A Lipoprotein YFGL, BAMB; 98.8 3.8E-06 1.3E-10 88.7 28.6 261 35-376 104-375 (376)
221 3v9f_A Two-component system se 98.7 0.0011 3.8E-08 77.2 59.6 517 7-670 8-567 (781)
222 3iuj_A Prolyl endopeptidase; h 98.7 1.3E-06 4.5E-11 100.3 25.4 249 16-344 127-412 (693)
223 1kb0_A Quinohemoprotein alcoho 98.7 1.8E-06 6.1E-11 98.2 25.8 198 136-365 246-536 (677)
224 3v9f_A Two-component system se 98.7 0.0013 4.4E-08 76.7 56.3 452 19-610 67-567 (781)
225 3dr2_A Exported gluconolactona 98.7 2E-06 6.9E-11 87.8 22.6 200 125-380 37-268 (305)
226 3dr2_A Exported gluconolactona 98.7 1.6E-06 5.5E-11 88.5 21.2 225 67-370 46-298 (305)
227 3hxj_A Pyrrolo-quinoline quino 98.6 4.9E-07 1.7E-11 93.6 16.8 309 7-445 11-320 (330)
228 1yiq_A Quinohemoprotein alcoho 98.6 3.7E-06 1.3E-10 95.8 24.4 210 137-367 239-537 (689)
229 3iuj_A Prolyl endopeptidase; h 98.6 3.4E-06 1.2E-10 96.9 24.0 198 130-379 126-359 (693)
230 1yiq_A Quinohemoprotein alcoho 98.6 6.9E-06 2.4E-10 93.6 26.0 51 327-379 454-505 (689)
231 3c75_H MADH, methylamine dehyd 98.6 1.1E-05 3.8E-10 84.9 25.4 182 146-379 83-295 (426)
232 2hz6_A Endoplasmic reticulum t 98.6 3.7E-08 1.3E-12 103.6 5.7 185 89-345 11-201 (369)
233 2ghs_A AGR_C_1268P; regucalcin 98.6 4E-05 1.4E-09 78.8 28.4 192 134-379 50-260 (326)
234 3ei3_A DNA damage-binding prot 98.5 0.0051 1.8E-07 73.6 65.9 148 483-672 843-1000(1158)
235 1mda_H Methylamine dehydrogena 98.5 4.9E-06 1.7E-10 86.2 20.0 253 45-379 47-346 (368)
236 3hxj_A Pyrrolo-quinoline quino 98.5 1.8E-06 6.1E-11 89.3 17.0 277 3-378 39-323 (330)
237 1kb0_A Quinohemoprotein alcoho 98.5 2E-05 6.9E-10 89.5 26.7 50 328-379 457-507 (677)
238 2ece_A 462AA long hypothetical 98.5 5.8E-05 2E-09 78.4 27.0 266 44-367 43-399 (462)
239 2iwa_A Glutamine cyclotransfer 98.5 2.5E-05 8.6E-10 76.1 22.5 194 20-288 23-238 (266)
240 2qe8_A Uncharacterized protein 98.5 1.3E-05 4.5E-10 83.2 22.0 243 122-438 9-309 (343)
241 2iwa_A Glutamine cyclotransfer 98.4 0.00015 5E-09 70.7 25.3 207 122-379 9-237 (266)
242 3nol_A Glutamine cyclotransfer 98.4 5.2E-05 1.8E-09 72.8 20.8 180 21-276 46-244 (262)
243 1mda_H Methylamine dehydrogena 98.3 2E-05 6.7E-10 81.6 19.0 270 5-358 47-366 (368)
244 3nol_A Glutamine cyclotransfer 98.3 0.00019 6.6E-09 68.9 24.0 185 134-368 44-244 (262)
245 2hz6_A Endoplasmic reticulum t 98.3 8.8E-08 3E-12 100.7 0.7 179 146-379 8-192 (369)
246 1npe_A Nidogen, entactin; glyc 98.3 0.00091 3.1E-08 66.3 29.6 249 37-361 3-263 (267)
247 3mbr_X Glutamine cyclotransfer 98.3 0.00023 8E-09 67.7 23.4 149 20-211 23-178 (243)
248 3nok_A Glutaminyl cyclase; bet 98.3 6.1E-05 2.1E-09 72.3 18.8 148 21-211 58-209 (268)
249 2ece_A 462AA long hypothetical 98.2 0.00025 8.5E-09 73.7 24.5 204 35-288 95-353 (462)
250 3mbr_X Glutamine cyclotransfer 98.2 0.0007 2.4E-08 64.5 24.7 194 122-368 9-223 (243)
251 3nok_A Glutaminyl cyclase; bet 98.2 0.00028 9.7E-09 67.7 21.6 182 134-368 56-254 (268)
252 1kv9_A Type II quinohemoprotei 98.1 0.00014 4.7E-09 82.6 22.1 80 276-366 436-519 (668)
253 2ad6_A Methanol dehydrogenase 98.1 0.00033 1.1E-08 77.7 23.0 76 277-363 443-521 (571)
254 3qqz_A Putative uncharacterize 97.9 0.0075 2.6E-07 58.3 26.3 210 126-375 20-249 (255)
255 1kv9_A Type II quinohemoprotei 97.9 0.0022 7.6E-08 72.7 26.3 51 327-379 437-488 (668)
256 1fwx_A Nitrous oxide reductase 97.9 0.00072 2.5E-08 73.0 20.2 197 35-287 101-361 (595)
257 2ad6_A Methanol dehydrogenase 97.9 0.0055 1.9E-07 67.9 28.2 52 326-379 442-494 (571)
258 1w6s_A Methanol dehydrogenase 97.9 0.004 1.4E-07 69.0 26.2 74 277-361 452-528 (599)
259 1flg_A Protein (quinoprotein e 97.8 0.0036 1.2E-07 69.5 25.4 75 277-362 465-542 (582)
260 2xbg_A YCF48-like protein; pho 97.8 0.042 1.5E-06 55.9 31.6 284 8-377 26-320 (327)
261 2fp8_A Strictosidine synthase; 97.7 0.0087 3E-07 61.0 24.5 112 258-379 186-313 (322)
262 2p4o_A Hypothetical protein; p 97.7 0.019 6.6E-07 57.9 26.4 235 67-370 33-279 (306)
263 1npe_A Nidogen, entactin; glyc 97.6 0.06 2E-06 52.9 29.2 194 133-379 36-238 (267)
264 1flg_A Protein (quinoprotein e 97.6 0.068 2.3E-06 59.1 31.0 51 327-379 465-516 (582)
265 1w6s_A Methanol dehydrogenase 97.5 0.077 2.6E-06 58.7 29.8 52 326-379 451-503 (599)
266 1fwx_A Nitrous oxide reductase 97.5 0.0031 1.1E-07 68.1 17.7 195 146-379 100-361 (595)
267 2fp8_A Strictosidine synthase; 97.4 0.041 1.4E-06 55.9 24.1 194 134-379 20-269 (322)
268 3qqz_A Putative uncharacterize 97.3 0.13 4.3E-06 49.6 26.1 162 18-211 27-203 (255)
269 1k3i_A Galactose oxidase precu 97.3 0.0046 1.6E-07 70.2 18.0 97 45-169 220-326 (656)
270 2p4o_A Hypothetical protein; p 97.2 0.21 7E-06 50.2 27.7 209 123-379 23-242 (306)
271 1k3i_A Galactose oxidase precu 97.2 0.051 1.8E-06 61.5 24.3 111 261-379 190-323 (656)
272 3v65_B Low-density lipoprotein 97.1 0.32 1.1E-05 50.6 27.9 195 133-377 116-316 (386)
273 2xzh_A Clathrin heavy chain 1; 97.1 0.26 8.9E-06 48.5 31.7 187 139-379 73-290 (365)
274 2xe4_A Oligopeptidase B; hydro 97.1 0.03 1E-06 64.4 21.3 199 130-377 170-396 (751)
275 2xbg_A YCF48-like protein; pho 97.0 0.35 1.2E-05 49.0 30.3 194 256-500 121-319 (327)
276 1ijq_A LDL receptor, low-densi 97.0 0.35 1.2E-05 48.7 30.4 236 37-344 3-246 (316)
277 3v64_C Agrin; beta propeller, 96.9 0.45 1.5E-05 48.7 27.2 194 133-377 73-273 (349)
278 3v64_C Agrin; beta propeller, 96.9 0.45 1.6E-05 48.7 27.8 177 156-379 52-234 (349)
279 3sov_A LRP-6, low-density lipo 96.9 0.41 1.4E-05 48.2 27.3 236 35-344 4-246 (318)
280 3v65_B Low-density lipoprotein 96.8 0.54 1.9E-05 48.9 26.9 183 149-379 89-277 (386)
281 3tc9_A Hypothetical hydrolase; 96.8 0.65 2.2E-05 49.1 28.5 200 131-377 177-428 (430)
282 3amr_A 3-phytase; beta-propell 96.8 0.41 1.4E-05 48.0 23.6 191 146-378 39-262 (355)
283 3p5b_L Low density lipoprotein 96.6 0.87 3E-05 47.6 28.6 224 89-377 84-318 (400)
284 4hw6_A Hypothetical protein, I 96.6 0.93 3.2E-05 47.9 26.8 110 259-377 275-431 (433)
285 1ijq_A LDL receptor, low-densi 96.6 0.72 2.5E-05 46.4 30.4 187 149-379 3-195 (316)
286 3amr_A 3-phytase; beta-propell 96.6 0.61 2.1E-05 46.8 23.4 198 36-286 41-262 (355)
287 2xe4_A Oligopeptidase B; hydro 96.5 0.18 6E-06 58.0 21.7 114 254-379 170-304 (751)
288 3sov_A LRP-6, low-density lipo 96.4 1 3.4E-05 45.3 26.9 180 156-379 12-197 (318)
289 3tc9_A Hypothetical hydrolase; 96.2 1.6 5.6E-05 45.9 26.6 159 18-211 137-300 (430)
290 3m0c_C LDL receptor, low-densi 96.1 2.8 9.5E-05 47.9 28.5 183 155-380 402-590 (791)
291 2p9w_A MAL S 1 allergenic prot 96.0 0.33 1.1E-05 48.2 17.7 113 258-378 64-214 (334)
292 1bpo_A Protein (clathrin); cla 96.0 1.7 5.9E-05 44.6 32.9 188 138-379 71-289 (494)
293 4hw6_A Hypothetical protein, I 96.0 2 6.8E-05 45.3 25.8 197 134-379 140-374 (433)
294 3p5b_L Low density lipoprotein 95.8 2.2 7.5E-05 44.5 30.7 187 149-379 85-277 (400)
295 3pbp_A Nucleoporin NUP82; beta 95.6 0.33 1.1E-05 49.8 16.0 160 35-209 32-209 (452)
296 2vpj_A Kelch-like protein 12; 95.3 1.3 4.3E-05 44.0 19.8 103 267-378 159-277 (301)
297 3sre_A PON1, serum paraoxonase 95.3 3 0.0001 42.3 23.9 202 492-732 81-309 (355)
298 2xzh_A Clathrin heavy chain 1; 95.2 2.7 9.2E-05 41.5 31.4 223 5-290 50-293 (365)
299 2xn4_A Kelch-like protein 2; s 95.2 1.2 4.2E-05 44.2 19.1 102 267-379 155-276 (302)
300 4asc_A Kelch repeat and BTB do 95.1 1.2 4.2E-05 44.6 18.9 94 267-369 148-253 (315)
301 3ii7_A Kelch-like protein 7; p 94.8 1.6 5.3E-05 43.5 18.9 62 146-211 55-126 (306)
302 3m0c_C LDL receptor, low-densi 94.8 7.3 0.00025 44.5 30.4 236 36-343 396-639 (791)
303 1n7d_A LDL receptor, low-densi 94.7 0.047 1.6E-06 61.9 7.7 240 36-345 378-623 (699)
304 1xi4_A Clathrin heavy chain; a 94.6 1.4 4.7E-05 52.6 19.2 188 138-379 71-289 (1630)
305 3sre_A PON1, serum paraoxonase 94.3 5.2 0.00018 40.5 25.1 178 42-277 81-287 (355)
306 2woz_A Kelch repeat and BTB do 94.1 3.5 0.00012 41.1 19.7 92 267-369 158-263 (318)
307 3pbp_A Nucleoporin NUP82; beta 94.0 1.7 5.8E-05 44.7 16.3 105 90-211 34-157 (452)
308 4a0p_A LRP6, LRP-6, low-densit 93.9 9.8 0.00033 42.2 56.5 234 36-346 7-247 (628)
309 1bpo_A Protein (clathrin); cla 93.8 7.1 0.00024 40.3 31.4 223 5-290 49-292 (494)
310 3ii7_A Kelch-like protein 7; p 93.7 6 0.00021 39.1 20.6 24 146-169 101-130 (306)
311 3kya_A Putative phosphatase; s 93.1 10 0.00036 40.2 29.4 117 256-379 309-475 (496)
312 2p9w_A MAL S 1 allergenic prot 93.0 7.9 0.00027 38.4 21.8 155 21-211 16-214 (334)
313 2xn4_A Kelch-like protein 2; s 92.8 7.9 0.00027 38.1 20.5 24 267-290 204-232 (302)
314 1tl2_A L10, protein (tachylect 92.8 1.8 6.1E-05 40.1 12.8 149 257-444 41-205 (236)
315 1n7d_A LDL receptor, low-densi 92.6 0.23 7.9E-06 56.3 8.5 194 133-377 406-612 (699)
316 2vpj_A Kelch-like protein 12; 92.6 8.4 0.00029 37.9 20.5 62 146-211 112-183 (301)
317 3a9g_A Putative uncharacterize 92.6 9.9 0.00034 38.6 29.4 31 133-168 29-59 (354)
318 1zgk_A Kelch-like ECH-associat 92.3 3.7 0.00013 40.8 16.4 101 267-378 168-286 (308)
319 2ism_A Putative oxidoreductase 92.2 11 0.00038 38.2 27.0 72 134-211 32-113 (352)
320 1zgk_A Kelch-like ECH-associat 91.5 10 0.00036 37.4 18.6 24 267-290 215-243 (308)
321 3s94_A LRP-6, low-density lipo 90.2 25 0.00087 38.8 57.2 226 90-378 11-242 (619)
322 4asc_A Kelch repeat and BTB do 90.1 16 0.00054 36.2 19.1 24 267-290 196-224 (315)
323 2ism_A Putative oxidoreductase 90.0 18 0.00061 36.6 24.4 58 309-367 268-333 (352)
324 4a0p_A LRP6, LRP-6, low-densit 89.7 28 0.00096 38.5 64.3 222 90-377 8-235 (628)
325 1xi4_A Clathrin heavy chain; a 89.3 16 0.00054 44.0 19.2 226 5-290 49-292 (1630)
326 3das_A Putative oxidoreductase 89.0 20 0.0007 36.0 19.4 116 248-369 23-160 (347)
327 2uvk_A YJHT; unknown function, 88.4 18 0.0006 36.6 17.7 13 157-169 168-180 (357)
328 1suu_A DNA gyrase subunit A; t 88.2 22 0.00074 35.2 29.2 218 358-611 6-231 (312)
329 1cru_A Protein (soluble quinop 87.9 22 0.00076 37.4 18.3 106 256-369 26-164 (454)
330 3kya_A Putative phosphatase; s 87.7 31 0.0011 36.5 26.3 163 20-211 141-340 (496)
331 3l6v_A GYRA, DNA gyrase subuni 87.7 26 0.00088 35.6 27.5 168 357-554 4-180 (370)
332 3a9g_A Putative uncharacterize 83.3 41 0.0014 33.9 28.6 105 256-368 28-154 (354)
333 1tl2_A L10, protein (tachylect 82.1 8.6 0.0003 35.6 9.9 146 267-444 3-158 (236)
334 3uc1_A DNA gyrase subunit A; D 81.5 45 0.0015 33.2 24.4 169 427-611 50-228 (327)
335 1zi0_A DNA gyrase subunit A; b 80.5 46 0.0016 32.7 27.7 218 358-611 1-226 (307)
336 2g8s_A Glucose/sorbosone dehyd 80.2 52 0.0018 33.1 26.5 28 134-164 19-46 (353)
337 2uvk_A YJHT; unknown function, 79.9 33 0.0011 34.5 15.1 24 146-169 65-98 (357)
338 3s94_A LRP-6, low-density lipo 79.5 79 0.0027 34.8 54.6 237 35-344 9-251 (619)
339 1wp5_A Topoisomerase IV; broke 78.3 56 0.0019 32.4 26.6 213 358-611 3-225 (323)
340 3ott_A Two-component system se 77.6 1E+02 0.0034 34.9 53.0 145 258-440 192-344 (758)
341 3no0_A DNA gyrase subunit A; D 77.0 55 0.0019 31.6 22.6 166 426-611 31-196 (276)
342 2woz_A Kelch repeat and BTB do 74.2 69 0.0024 31.4 22.3 62 146-211 109-183 (318)
343 2zwa_A Leucine carboxyl methyl 69.2 85 0.0029 35.1 16.0 63 146-211 451-521 (695)
344 3ott_A Two-component system se 67.9 1.6E+02 0.0056 33.1 59.1 452 18-610 63-544 (758)
345 2be1_A Serine/threonine-protei 65.2 35 0.0012 34.1 10.4 64 147-211 10-75 (339)
346 2zwa_A Leucine carboxyl methyl 62.7 1.4E+02 0.0049 33.2 16.2 109 266-379 499-635 (695)
347 1cru_A Protein (soluble quinop 57.3 1.9E+02 0.0064 30.2 18.0 25 581-605 405-430 (454)
348 2be1_A Serine/threonine-protei 51.1 29 0.00099 34.7 7.0 31 704-734 111-141 (339)
349 2wg3_C Hedgehog-interacting pr 50.4 2.4E+02 0.0083 29.4 26.2 29 134-165 15-44 (463)
350 3qhy_B Beta-lactamase inhibito 48.5 1.9E+02 0.0065 27.7 18.6 102 258-378 142-245 (282)
351 3sbq_A Nitrous-oxide reductase 48.3 1.8E+02 0.0061 31.3 12.4 117 66-201 323-454 (638)
352 2g8s_A Glucose/sorbosone dehyd 45.9 2.4E+02 0.0082 28.1 28.3 107 257-368 18-149 (353)
353 3sbq_A Nitrous-oxide reductase 44.4 2.2E+02 0.0075 30.6 12.3 40 35-74 142-183 (638)
354 4gq2_M Nucleoporin NUP120; bet 43.9 4.4E+02 0.015 30.6 21.3 30 640-672 238-267 (950)
355 3das_A Putative oxidoreductase 37.6 3.2E+02 0.011 27.2 28.2 34 133-169 32-65 (347)
356 4gq2_M Nucleoporin NUP120; bet 29.3 68 0.0023 37.5 6.5 38 133-173 236-273 (950)
357 3b7f_A Glycosyl hydrolase, BNR 27.7 4.7E+02 0.016 26.1 26.3 66 309-374 115-203 (394)
358 3no0_A DNA gyrase subunit A; D 25.4 4.4E+02 0.015 25.0 24.1 169 350-554 69-246 (276)
359 3kci_A Probable E3 ubiquitin-p 24.0 5.6E+02 0.019 25.7 31.7 120 257-378 211-344 (389)
360 3kci_A Probable E3 ubiquitin-p 22.7 5.9E+02 0.02 25.5 30.8 69 310-378 54-134 (389)
361 4fhn_B Nucleoporin NUP120; pro 21.5 85 0.0029 37.6 5.5 82 192-290 182-271 (1139)
362 3f7f_A Nucleoporin NUP120; nuc 21.2 1.4E+02 0.0049 33.0 6.6 39 130-173 219-257 (729)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.2e-53 Score=483.22 Aligned_cols=528 Identities=16% Similarity=0.214 Sum_probs=380.4
Q ss_pred CCCCcceeeccce-------eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCe--eeeEEEeeccccEEeEE
Q 003423 3 KKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT--LIRPFQVFHGIRLHGIS 72 (821)
Q Consensus 3 ~~~i~~w~~~~~~-------~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~--~~~~~~~~~~~~i~~i~ 72 (821)
++++++|++.+++ |..+|++++|+ || +++|++|. |+.|+|||+.+++ ....+..+.+ +|.+++
T Consensus 38 ~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~s--pd----g~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~-~v~~v~ 110 (611)
T 1nr0_A 38 GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTS--PS----GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG-PVKDIS 110 (611)
T ss_dssp TTEEEEEETTCSSCCEEECCCSSCEEEEEEC--TT----SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSS-CEEEEE
T ss_pred CCEEEEecCCCcccCeEecCCCCceEEEEEC--CC----CcEEEEEeCCCCEEEeECCCCcceeeEeecccCC-ceEEEE
Confidence 4578999998654 77899999999 99 78888877 8999999997654 3455665554 799999
Q ss_pred eccccCCCCCCccceeeEEEEEc-C----CeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCC
Q 003423 73 CNFINCTEGSVSTRVTFEVALFG-E----KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN 147 (821)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~l~~~g-~----~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~ 147 (821)
|+|++ ..+++.+ + +.|++|+.. +....+.+|.+.|++++|+| ++
T Consensus 111 fs~dg-----------~~l~~~~~~~~~~~~v~~wd~~-----------------~~~~~l~gh~~~v~~v~f~p---~~ 159 (611)
T 1nr0_A 111 WDSES-----------KRIAAVGEGRERFGHVFLFDTG-----------------TSNGNLTGQARAMNSVDFKP---SR 159 (611)
T ss_dssp ECTTS-----------CEEEEEECCSSCSEEEEETTTC-----------------CBCBCCCCCSSCEEEEEECS---SS
T ss_pred ECCCC-----------CEEEEEECCCCceeEEEEeeCC-----------------CCcceecCCCCCceEEEECC---CC
Confidence 99763 3555544 3 367777732 23456789999999999999 87
Q ss_pred C-EEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcc
Q 003423 148 R-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (821)
Q Consensus 148 ~-~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~ 226 (821)
. .|++|+.|++|++||..+++....+..|.. .+.+++| +|++.+||+|+.|+.|++||..
T Consensus 160 ~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~-~V~~v~f---spdg~~las~s~D~~i~lwd~~--------------- 220 (611)
T 1nr0_A 160 PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK-FVHSVRY---NPDGSLFASTGGDGTIVLYNGV--------------- 220 (611)
T ss_dssp SCEEEEEETTSCEEEEETTTBEEEEEECCCSS-CEEEEEE---CTTSSEEEEEETTSCEEEEETT---------------
T ss_pred CeEEEEEeCCCeEEEEECCCCeEeeeeccccC-ceEEEEE---CCCCCEEEEEECCCcEEEEECC---------------
Confidence 6 699999999999999998888888877654 5778888 6899999999999999999987
Q ss_pred cCCCCCCcceeeecccccceeeEEEEe-------cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceee
Q 003423 227 AHGSSSDFKCFKLQDQQHTAVNLFRLV-------GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEV 299 (821)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~ 299 (821)
....+..+. +|.+.|.+++|+|++++|+|++.|++|++||+.+++. ...+
T Consensus 221 ------------------~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~-----~~~~ 277 (611)
T 1nr0_A 221 ------------------DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV-----EKTI 277 (611)
T ss_dssp ------------------TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----EEEE
T ss_pred ------------------CCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce-----eeee
Confidence 444455553 7999999999999999999999999999999988755 3211
Q ss_pred eceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 300 GSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 300 ~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
..-..+...+..+.|.+..+++++.|+++++|+. .++....+.+|.. .|++++|+|++++|++++.|+.|++||+.
T Consensus 278 --~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~-~v~~l~~spdg~~l~s~s~D~~v~~Wd~~ 354 (611)
T 1nr0_A 278 --PVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNK-AITALSSSADGKTLFSADAEGHINSWDIS 354 (611)
T ss_dssp --ECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred --cCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCC-CEEEEEEeCCCCEEEEEeCCCcEEEEECC
Confidence 0112344567788888899999999999999999 5677778889988 69999999999999999999999999996
Q ss_pred CcCC-Ccc-cCCc---cccccCCCcceEEeecCCcccceeccCC--------------CCcceEEEEeecCCeEEEEecC
Q 003423 379 AFLP-GSL-ESHP---EAKEFNGRTEIFSIKIPNFSEQIRLTDS--------------KSEYVRCLHLTSEDTLYIATNH 439 (821)
Q Consensus 379 ~~~~-~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~i~~l~f~~~~~~l~~~~~ 439 (821)
.... ..+ .+|. ..+.+.+...++..... ..+..+.. ....+..++|+|++..++++.+
T Consensus 355 ~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d---~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~ 431 (611)
T 1nr0_A 355 TGISNRVFPDVHATMITGIKTTSKGDLFTVSWD---DHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY 431 (611)
T ss_dssp TCCEEECSSCSCSSCEEEEEECTTSCEEEEETT---TEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEES
T ss_pred CCceeeecccCCcceEEEEEECCCCcEEEEEcC---CceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeC
Confidence 5321 111 1221 11222222222222211 11111111 1123556677777655554444
Q ss_pred CcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccC
Q 003423 440 GYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAG 519 (821)
Q Consensus 440 g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 519 (821)
+.+. +|+... +........+.++.+.+ +++++++|+.|+.|++|++.+..... .....+
T Consensus 432 ~~v~---~~~~~~-----~~~~~~~~~v~~va~sp--------dg~~lasgs~D~~v~lwd~~~~~~~~---~~~~~h-- 490 (611)
T 1nr0_A 432 KHIA---IYSHGK-----LTEVPISYNSSCVALSN--------DKQFVAVGGQDSKVHVYKLSGASVSE---VKTIVH-- 490 (611)
T ss_dssp SEEE---EEETTE-----EEEEECSSCEEEEEECT--------TSCEEEEEETTSEEEEEEEETTEEEE---EEEEEC--
T ss_pred ceEE---EEeCCc-----eeeeecCCCceEEEEeC--------CCCEEEEeCCCCeEEEEEccCCceee---eeccCC--
Confidence 4443 332211 11112345566777654 56999999999999999987643210 011111
Q ss_pred ccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEE-EecccCceEEEEEeecCCCEEEEE
Q 003423 520 IERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAE-FSSCFGARIMCLDASFEDEVLFCG 598 (821)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~I~~l~~s~~~~~L~sg 598 (821)
...+. ..+++|++++|++++.|++|++|++.... ++... ....|...|++++|+|++++||+|
T Consensus 491 -~~~v~--~v~fspdg~~las~s~d~~v~~w~~~~~~-------------~~~~~~~~~~H~~~V~~v~fspdg~~lasg 554 (611)
T 1nr0_A 491 -PAEIT--SVAFSNNGAFLVATDQSRKVIPYSVANNF-------------ELAHTNSWTFHTAKVACVSWSPDNVRLATG 554 (611)
T ss_dssp -SSCEE--EEEECTTSSEEEEEETTSCEEEEEGGGTT-------------EESCCCCCCCCSSCEEEEEECTTSSEEEEE
T ss_pred -CCceE--EEEECCCCCEEEEEcCCCCEEEEEcCCCC-------------ceeeeeeeeecccceeEEEECCCCCEEEEE
Confidence 12222 24688999999999999999999987621 22221 113489999999999999999999
Q ss_pred cCCCcEEEEecCcccccccccccccccCcccccccccCCcceEEEEEEecCCCceEEEEecCCCeEEEEEe
Q 003423 599 DLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEY 669 (821)
Q Consensus 599 s~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~t~g~Dg~i~iw~~ 669 (821)
+.||+|++|++... ....+..+ ..|....|++++|.| ++. |+|+|.||+|++|++
T Consensus 555 s~D~~v~lW~~~~~-----------~~~~~~~~-~~h~~~~v~~v~fs~---d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 555 SLDNSVIVWNMNKP-----------SDHPIIIK-GAHAMSSVNSVIWLN---ETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp ETTSCEEEEETTCT-----------TSCCEEET-TSSTTSCEEEEEEEE---TTE-EEEEETTSCEEEEEC
T ss_pred ECCCcEEEEECCCc-----------ccccchhh-ccCcccCeeEEEEcC---CCE-EEEecCCCCEEEEec
Confidence 99999999998742 00111223 256567899999995 445 999999999999997
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.1e-52 Score=479.08 Aligned_cols=519 Identities=17% Similarity=0.260 Sum_probs=391.2
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
|.++|+|++|+ || +++|++|. |+.|+|||. +++++++++.|.. .|.+++|+|++ ..+++++
T Consensus 15 H~~~V~~~a~s--pd----g~~las~~~d~~v~iWd~-~~~~~~~l~gh~~-~V~~l~fspdg----------~~las~~ 76 (577)
T 2ymu_A 15 HSSSVRGVAFS--PD----GQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-SVWGVAFSPDG----------QTIASAS 76 (577)
T ss_dssp CSSCEEEEEEC--TT----SSCEEEEETTSEEEEECT-TSCEEEEEECCSS-CEEEEEECTTS----------SEEEEEE
T ss_pred CCCcEEEEEEC--CC----CCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCC-CEEEEEECCCC----------CEEEEEe
Confidence 78999999999 99 67887766 799999995 7889999988665 79999999763 2455556
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEc
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 174 (821)
.|+.|+|||+. .+.+..+.+|.+.|.+++|+| ++++|++++.|+.+++|+....... ...
T Consensus 77 ~d~~i~vWd~~----------------~~~~~~~~~~~~~v~~~~~s~---d~~~l~~~~~d~~~~~~~~~~~~~~-~~~ 136 (577)
T 2ymu_A 77 DDKTVKLWNRN----------------GQLLQTLTGHSSSVRGVAFSP---DGQTIASASDDKTVKLWNRNGQLLQ-TLT 136 (577)
T ss_dssp TTSCEEEEETT----------------SCEEEEECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEETTCCEEE-EEC
T ss_pred CCCEEEEEECC----------------CCEEEEEECCCCCEEEEEECC---CCCEEEEEcCCCceeecccccceee-ecc
Confidence 78999999954 256788899999999999999 9999999999999999997544321 111
Q ss_pred cCcc----------------------------------------eeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCC
Q 003423 175 SPER----------------------------------------CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (821)
Q Consensus 175 ~~~~----------------------------------------~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~ 214 (821)
.+.. ..++.+.+ ++++.++++|+.||.|++||..
T Consensus 137 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~~d~~v~~w~~~--- 210 (577)
T 2ymu_A 137 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAF---SPDGQTIASASDDKTVKLWNRN--- 210 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEE---CTTSSCEEEEETTSEEEEECTT---
T ss_pred CCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeee---cCCCCEEEEEcCCCEEEEEeCC---
Confidence 1111 11222333 3556666666666666666643
Q ss_pred cccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCC
Q 003423 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD 294 (821)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 294 (821)
.+.+..+.+|.+.|.+++|+|++++|++++.|+.|++||......
T Consensus 211 -------------------------------~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~---- 255 (577)
T 2ymu_A 211 -------------------------------GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL---- 255 (577)
T ss_dssp -------------------------------SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE----
T ss_pred -------------------------------CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEE----
Confidence 356677889999999999999999999999999999999654322
Q ss_pred CceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcE
Q 003423 295 SIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAI 372 (821)
Q Consensus 295 ~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I 372 (821)
..+.+|...|.+++|+ +..+++++.|+++++|+.+++.+..+.+|.. .|++++|+|+++.|++++.|+.|
T Consensus 256 -------~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~t~~~d~~i 327 (577)
T 2ymu_A 256 -------QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS-SVWGVAFSPDGQTIASASDDKTV 327 (577)
T ss_dssp -------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCE
T ss_pred -------EEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCC-CeEEEEECCCCCEEEEEeCCCeE
Confidence 5788999999999998 4799999999999999999999999999988 69999999999999999999999
Q ss_pred EEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEe-cCCcEEEEEecCCC
Q 003423 373 KVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT-NHGYLYHTKLCDMD 451 (821)
Q Consensus 373 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~-~~g~~~~~~i~~~~ 451 (821)
++||.++..+.. +..+...+.+++|+|++..+++. .+|.+. +|+..
T Consensus 328 ~~w~~~~~~~~~------------------------------~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~---~~~~~ 374 (577)
T 2ymu_A 328 KLWNRNGQHLQT------------------------------LTGHSSSVWGVAFSPDGQTIASASDDKTVK---LWNRN 374 (577)
T ss_dssp EEEETTSCEEEE------------------------------ECCCSSCEEEEEECTTSSEEEEEETTSEEE---EEETT
T ss_pred EEEeCCCCeeEE------------------------------EeCCCCCEEEEEECCCCCEEEEEeCCCEEE---EEcCC
Confidence 999986532222 23345679999999999777655 455565 44433
Q ss_pred cceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEee
Q 003423 452 SVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCK 531 (821)
Q Consensus 452 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (821)
... ..... .+..++.++.+.+ +++++++++.|+.|++|+.... ....+..+ ...+.. .++
T Consensus 375 ~~~-~~~~~-~~~~~v~~~~~s~--------dg~~l~~~~~d~~v~~~~~~~~-----~~~~~~~~---~~~v~~--~~~ 434 (577)
T 2ymu_A 375 GQL-LQTLT-GHSSSVRGVAFSP--------DGQTIASASDDKTVKLWNRNGQ-----LLQTLTGH---SSSVWG--VAF 434 (577)
T ss_dssp CCE-EEEEE-CCSSCEEEEEECT--------TSSCEEEEETTSEEEEECTTCC-----EEEEEECC---SSCEEE--EEE
T ss_pred CCE-EEEec-CCCCCeEEEEECC--------CCCEEEEEeCCCEEEEEeCCCC-----EEEEecCC---CCCeEE--EEE
Confidence 222 12222 3466788888755 4589999999999999995432 11222212 222222 357
Q ss_pred cCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCc
Q 003423 532 SLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (821)
Q Consensus 532 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~ 611 (821)
+|++++|++++.|+.|++|+... ++...+ ..|...|++++|+|++++|++|+.||.|++|+...
T Consensus 435 s~d~~~l~~~~~d~~v~~w~~~~---------------~~~~~~-~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~ 498 (577)
T 2ymu_A 435 SPDDQTIASASDDKTVKLWNRNG---------------QLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 498 (577)
T ss_dssp CTTSSEEEEEETTSEEEEEETTS---------------CEEEEE-ECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred CCCCCEEEEEcCCCEEEEEECCC---------------CEEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC
Confidence 89999999999999999999643 334444 67899999999999999999999999999999542
Q ss_pred ccccccccccccccCcccccccccCCcceEEEEEEecCCCceEEEEecCCCeEEEEEeecCCceeeeeeeeeeeeeeeee
Q 003423 612 DLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQ 691 (821)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 691 (821)
..+..+. .| ...|++|+|+ +++.+|++++.||.|++|+++.. ....+.++ ...+.
T Consensus 499 --------------~~~~~~~-~h-~~~v~~l~~s---~dg~~l~s~~~dg~v~lwd~~~~-~~~~~~~h-----~~~v~ 553 (577)
T 2ymu_A 499 --------------QLLQTLT-GH-SSSVRGVAFS---PDGQTIASASDDKTVKLWNRNGQ-LLQTLTGH-----SSSVW 553 (577)
T ss_dssp --------------CEEEEEE-CC-SSCEEEEEEC---TTSSCEEEEETTSEEEEECTTSC-EEEEEECC-----SSCEE
T ss_pred --------------CEEEEEe-CC-CCCEEEEEEc---CCCCEEEEEECcCEEEEEeCCCC-EEEEEcCC-----CCCEE
Confidence 2234443 56 5689999999 56788999999999999996431 11111111 11222
Q ss_pred eeccCCCccCCCCCeEEEeeecccEEEEE
Q 003423 692 SVSAENNSIDLASCNYAAGFASTDFIIWN 720 (821)
Q Consensus 692 ~~~~~~~~~~~~~~~l~~g~~~~~~~vW~ 720 (821)
.+ .+.+++++|++|+.|+.+++||
T Consensus 554 ~~-----~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 554 GV-----AFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EE-----EECTTSSCEEEEETTSCEEEEC
T ss_pred EE-----EEcCCCCEEEEEeCCCEEEEeC
Confidence 22 2345677899999999999997
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.3e-51 Score=470.92 Aligned_cols=549 Identities=13% Similarity=0.100 Sum_probs=400.9
Q ss_pred ceeeccceeeeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccce
Q 003423 8 EWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRV 87 (821)
Q Consensus 8 ~w~~~~~~~~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~ 87 (821)
+|........+.+++++|+ || +++|+++.++.|++||+.+++.+..+..|.. .|.+++|+|++
T Consensus 9 ~~~~~~~~~~g~~~~~~~s--pd----g~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~-~v~~~~~spdg---------- 71 (611)
T 1nr0_A 9 LFPSLPRTARGTAVVLGNT--PA----GDKIQYCNGTSVYTVPVGSLTDTEIYTEHSH-QTTVAKTSPSG---------- 71 (611)
T ss_dssp EECCCCCCCTTCCCCCEEC--TT----SSEEEEEETTEEEEEETTCSSCCEEECCCSS-CEEEEEECTTS----------
T ss_pred EECCCCCcccCceeEEeeC--CC----CCEEEeCCCCEEEEecCCCcccCeEecCCCC-ceEEEEECCCC----------
Confidence 4443334456788999999 99 7888888889999999999999888887666 69999999764
Q ss_pred eeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECC----CcEEEEE
Q 003423 88 TFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD----NSIRVWD 163 (821)
Q Consensus 88 ~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d----~~i~iwd 163 (821)
.+++.+..|+.|+|||+.... ......+.+|.++|.+++|+| +++.|++++.+ +.|++||
T Consensus 72 ~~lasg~~d~~v~lWd~~~~~-------------~~~~~~~~~~~~~v~~v~fs~---dg~~l~~~~~~~~~~~~v~~wd 135 (611)
T 1nr0_A 72 YYCASGDVHGNVRIWDTTQTT-------------HILKTTIPVFSGPVKDISWDS---ESKRIAAVGEGRERFGHVFLFD 135 (611)
T ss_dssp SEEEEEETTSEEEEEESSSTT-------------CCEEEEEECSSSCEEEEEECT---TSCEEEEEECCSSCSEEEEETT
T ss_pred cEEEEEeCCCCEEEeECCCCc-------------ceeeEeecccCCceEEEEECC---CCCEEEEEECCCCceeEEEEee
Confidence 244445568999999986432 234567889999999999999 99999998865 3677777
Q ss_pred ccCCceeEEEccCcceeEEEEeeccCCccCe-EEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccc
Q 003423 164 ISNSSIILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (821)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (821)
+++....+.+|.. .+.+++| +|++. +|++|+.|+.|++||..
T Consensus 136 --~~~~~~~l~gh~~-~v~~v~f---~p~~~~~l~s~s~D~~v~lwd~~------------------------------- 178 (611)
T 1nr0_A 136 --TGTSNGNLTGQAR-AMNSVDF---KPSRPFRIISGSDDNTVAIFEGP------------------------------- 178 (611)
T ss_dssp --TCCBCBCCCCCSS-CEEEEEE---CSSSSCEEEEEETTSCEEEEETT-------------------------------
T ss_pred --CCCCcceecCCCC-CceEEEE---CCCCCeEEEEEeCCCeEEEEECC-------------------------------
Confidence 4555556666554 5778888 46664 69999999999999987
Q ss_pred ccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEE-------eccceeEEEEE
Q 003423 243 QHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL-------YGHNARVWDCC 315 (821)
Q Consensus 243 ~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~-------~~h~~~i~~v~ 315 (821)
..+....+.+|.+.|.+++|+|++++|+|++.|++|++||+.+++. . ..+ .+|...|++++
T Consensus 179 --~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~-----~-----~~~~~~~~~~~~h~~~V~~v~ 246 (611)
T 1nr0_A 179 --PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK-----T-----GVFEDDSLKNVAHSGSVFGLT 246 (611)
T ss_dssp --TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----E-----EECBCTTSSSCSSSSCEEEEE
T ss_pred --CCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE-----e-----eeeccccccccccCCCEEEEE
Confidence 5677788999999999999999999999999999999999988654 2 223 27999999999
Q ss_pred Ec--CCEEEEEeCCCeEEEEcC-CCceeeEeecccC--CCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCcc
Q 003423 316 LT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIG--RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPE 390 (821)
Q Consensus 316 ~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~--~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~ 390 (821)
|+ +.+|++++.|++|++||+ +++++.++..+.. ..+..+.+ ++..+++++.|+.+++|+.....
T Consensus 247 ~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~--------- 315 (611)
T 1nr0_A 247 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGS--------- 315 (611)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTE---------
T ss_pred ECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCC---------
Confidence 98 479999999999999999 6787777765422 13455555 67889999999999999985320
Q ss_pred ccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEe-cCCcEEEEEecCCCcceeeEeeeccCCcceEE
Q 003423 391 AKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT-NHGYLYHTKLCDMDSVNWNKILQVSEGMPIIC 469 (821)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~-~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~ 469 (821)
....+..|...|.+++|+|++.+++++ .++.+. +|+..+..........+...+.+
T Consensus 316 --------------------~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~---~Wd~~~~~~~~~~~~~h~~~v~~ 372 (611)
T 1nr0_A 316 --------------------IDQVRYGHNKAITALSSSADGKTLFSADAEGHIN---SWDISTGISNRVFPDVHATMITG 372 (611)
T ss_dssp --------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE---EEETTTCCEEECSSCSCSSCEEE
T ss_pred --------------------cceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEE---EEECCCCceeeecccCCcceEEE
Confidence 112234567789999999999776655 566676 55544433233332335667777
Q ss_pred EeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCC---------cceeEEeeccCccc---------------e--
Q 003423 470 MDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP---------QLSFTFTWSAGIER---------------Q-- 523 (821)
Q Consensus 470 ~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~---------~~~~~~~~~~~~~~---------------~-- 523 (821)
+.+.+ +..+++++.|+.+++|++.+..... .....+.++++... +
T Consensus 373 ~~~s~---------~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~ 443 (611)
T 1nr0_A 373 IKTTS---------KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT 443 (611)
T ss_dssp EEECT---------TSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEE
T ss_pred EEECC---------CCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCcee
Confidence 77643 2568889999999999987643321 11122333332210 0
Q ss_pred -----eeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEE
Q 003423 524 -----LLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCG 598 (821)
Q Consensus 524 -----~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sg 598 (821)
......+++|++++|++++.|+.|++||+.... +.... ...|...|++++|+|++++|++|
T Consensus 444 ~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~------------~~~~~--~~~h~~~v~~v~fspdg~~las~ 509 (611)
T 1nr0_A 444 EVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS------------VSEVK--TIVHPAEITSVAFSNNGAFLVAT 509 (611)
T ss_dssp EEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE------------EEEEE--EEECSSCEEEEEECTTSSEEEEE
T ss_pred eeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc------------eeeee--ccCCCCceEEEEECCCCCEEEEE
Confidence 001234678999999999999999999997641 01112 24689999999999999999999
Q ss_pred cCCCcEEEEecCcccccccccccccccCcccc-cccccCCcceEEEEEEecCCCceEEEEecCCCeEEEEEeecCCcee-
Q 003423 599 DLRGNLVLFPLLRDLLNDKSVALHVEVSPLNY-FKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESL- 676 (821)
Q Consensus 599 s~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~~Vt~i~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~~~~~- 676 (821)
+.|++|++|++... ...... ....| ...|++++|+ +++.+|+|++.|++|++|+++......
T Consensus 510 s~d~~v~~w~~~~~------------~~~~~~~~~~~H-~~~V~~v~fs---pdg~~lasgs~D~~v~lW~~~~~~~~~~ 573 (611)
T 1nr0_A 510 DQSRKVIPYSVANN------------FELAHTNSWTFH-TAKVACVSWS---PDNVRLATGSLDNSVIVWNMNKPSDHPI 573 (611)
T ss_dssp ETTSCEEEEEGGGT------------TEESCCCCCCCC-SSCEEEEEEC---TTSSEEEEEETTSCEEEEETTCTTSCCE
T ss_pred cCCCCEEEEEcCCC------------Cceeeeeeeeec-ccceeEEEEC---CCCCEEEEEECCCcEEEEECCCcccccc
Confidence 99999999998741 111111 12246 6689999999 567899999999999999996543211
Q ss_pred -eeeeeeeeeeeeeeeeeccCCCccCCCCCeEEEeeecccEEEEEC
Q 003423 677 -EFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNL 721 (821)
Q Consensus 677 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~vW~~ 721 (821)
...++ ....+..+. +.+++. |++|+.|+.+++|+.
T Consensus 574 ~~~~~h----~~~~v~~v~-----fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 574 IIKGAH----AMSSVNSVI-----WLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp EETTSS----TTSCEEEEE-----EEETTE-EEEEETTSCEEEEEC
T ss_pred hhhccC----cccCeeEEE-----EcCCCE-EEEecCCCCEEEEec
Confidence 11111 011111111 123344 999999999999996
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.7e-51 Score=465.52 Aligned_cols=507 Identities=18% Similarity=0.291 Sum_probs=392.0
Q ss_pred CCCCCcceeeccce------eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEec
Q 003423 2 GKKDLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (821)
Q Consensus 2 ~~~~i~~w~~~~~~------~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~ 74 (821)
.|++|++||..... |.++|++|+|+ || +++|+++. |+.|+|||. +++++..+..+.. .|.+++|+
T Consensus 36 ~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fs--pd----g~~las~~~d~~i~vWd~-~~~~~~~~~~~~~-~v~~~~~s 107 (577)
T 2ymu_A 36 DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS--PD----GQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-SVRGVAFS 107 (577)
T ss_dssp TTSEEEEECTTSCEEEEEECCSSCEEEEEEC--TT----SSEEEEEETTSCEEEEET-TSCEEEEECCCSS-CEEEEEEC
T ss_pred CCCEEEEEECCCCEEEEEeCCCCCEEEEEEC--CC----CCEEEEEeCCCEEEEEEC-CCCEEEEEECCCC-CEEEEEEC
Confidence 57899999964322 77899999999 99 67777765 899999995 6788888887665 79999999
Q ss_pred cccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCC-----C-----CCCCCccc---------------cccceeeecc
Q 003423 75 FINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSP-----N-----SQYQPETC---------------VNLSLVQSLP 129 (821)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~-----~-----~~~~~~~~---------------~~~~~~~~~~ 129 (821)
|++ ..++++..++.+++|+....... . ..+.++.. ..........
T Consensus 108 ~d~----------~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (577)
T 2ymu_A 108 PDG----------QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 177 (577)
T ss_dssp TTS----------SEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEE
T ss_pred CCC----------CEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeecc
Confidence 763 25566667899999985421100 0 00001100 1123445567
Q ss_pred CCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEE
Q 003423 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWK 209 (821)
Q Consensus 130 ~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd 209 (821)
.|...|.+++|+| ++++|++++.|+.|++||. +++.+..+..+.. .+.+++| ++++.+|++++.|+.|++|+
T Consensus 178 ~~~~~v~~~~~~~---~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~-~v~~~~~---s~dg~~l~~~~~d~~i~~w~ 249 (577)
T 2ymu_A 178 GHSSSVWGVAFSP---DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-SVRGVAF---SPDGQTIASASDDKTVKLWN 249 (577)
T ss_dssp CCSSCEEEEEECT---TSSCEEEEETTSEEEEECT-TSCEEEEEECCSS-CEEEEEE---CTTSSCEEEEETTSCEEEEC
T ss_pred CCCcceeeeeecC---CCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCC-CEEEEEE---CCCCCEEEEEeCCCEEEEEe
Confidence 7889999999999 9999999999999999995 5667777776654 3567776 68899999999999999999
Q ss_pred cccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCc
Q 003423 210 VDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (821)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~ 289 (821)
.. .+.+..+.+|...|.+++|+|+++.|++++.|++|++||.....
T Consensus 250 ~~----------------------------------~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~ 295 (577)
T 2ymu_A 250 RN----------------------------------GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQL 295 (577)
T ss_dssp TT----------------------------------SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE
T ss_pred CC----------------------------------CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcE
Confidence 65 34567788999999999999999999999999999999975433
Q ss_pred ccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEe
Q 003423 290 WKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367 (821)
Q Consensus 290 ~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~ 367 (821)
. ..+.+|...|++++|+ +..+++++.|+++++|+.+++.+..+.+|.. .|++++|+|++++|++|+
T Consensus 296 ~-----------~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~ 363 (577)
T 2ymu_A 296 L-----------QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSS-SVWGVAFSPDGQTIASAS 363 (577)
T ss_dssp E-----------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSS-CEEEEEECTTSSEEEEEE
T ss_pred E-----------EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCC-CEEEEEECCCCCEEEEEe
Confidence 2 5788999999999998 4799999999999999998888899999988 699999999999999999
Q ss_pred CCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEe-cCCcEEEEE
Q 003423 368 FDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT-NHGYLYHTK 446 (821)
Q Consensus 368 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~-~~g~~~~~~ 446 (821)
.||.|++|+.++..+.+ +..|...|++++|+|++.++++. .++.+.
T Consensus 364 ~dg~v~~~~~~~~~~~~------------------------------~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~--- 410 (577)
T 2ymu_A 364 DDKTVKLWNRNGQLLQT------------------------------LTGHSSSVRGVAFSPDGQTIASASDDKTVK--- 410 (577)
T ss_dssp TTSEEEEEETTCCEEEE------------------------------EECCSSCEEEEEECTTSSCEEEEETTSEEE---
T ss_pred CCCEEEEEcCCCCEEEE------------------------------ecCCCCCeEEEEECCCCCEEEEEeCCCEEE---
Confidence 99999999975432222 22345679999999999777665 455554
Q ss_pred ecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCccceeee
Q 003423 447 LCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLG 526 (821)
Q Consensus 447 i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (821)
+|+..... ..... .+...+.++.+.+ ++.++++++.|+.|++|+.... ....+..+ ...+..
T Consensus 411 ~~~~~~~~-~~~~~-~~~~~v~~~~~s~--------d~~~l~~~~~d~~v~~w~~~~~-----~~~~~~~~---~~~v~~ 472 (577)
T 2ymu_A 411 LWNRNGQL-LQTLT-GHSSSVWGVAFSP--------DDQTIASASDDKTVKLWNRNGQ-----LLQTLTGH---SSSVRG 472 (577)
T ss_dssp EECTTCCE-EEEEE-CCSSCEEEEEECT--------TSSEEEEEETTSEEEEEETTSC-----EEEEEECC---SSCEEE
T ss_pred EEeCCCCE-EEEec-CCCCCeEEEEECC--------CCCEEEEEcCCCEEEEEECCCC-----EEEEEcCC---CCCEEE
Confidence 55543322 22222 3466788888755 5589999999999999996432 11222212 222222
Q ss_pred eEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEE
Q 003423 527 TYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVL 606 (821)
Q Consensus 527 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~i 606 (821)
.+++|++++|++++.|+.|++|+.. + ++...+ .+|...|++++|+|++++||+|+.||.|++
T Consensus 473 --~~~spd~~~las~~~d~~i~iw~~~-~--------------~~~~~~-~~h~~~v~~l~~s~dg~~l~s~~~dg~v~l 534 (577)
T 2ymu_A 473 --VAFSPDGQTIASASDDKTVKLWNRN-G--------------QLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKL 534 (577)
T ss_dssp --EEECTTSCEEEEEETTSEEEEEETT-S--------------CEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred --EEEcCCCCEEEEEeCCCEEEEEcCC-C--------------CEEEEE-eCCCCCEEEEEEcCCCCEEEEEECcCEEEE
Confidence 4578999999999999999999953 2 445555 789999999999999999999999999999
Q ss_pred EecCcccccccccccccccCcccccccccCCcceEEEEEEecCCCceEEEEecCCCeEEEEE
Q 003423 607 FPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLE 668 (821)
Q Consensus 607 w~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~t~g~Dg~i~iw~ 668 (821)
||... +.+..+. .| ...|++++|. +++.+|+|+|.||+|++|+
T Consensus 535 wd~~~--------------~~~~~~~-~h-~~~v~~~~fs---~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 535 WNRNG--------------QLLQTLT-GH-SSSVWGVAFS---PDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp ECTTS--------------CEEEEEE-CC-SSCEEEEEEC---TTSSCEEEEETTSCEEEEC
T ss_pred EeCCC--------------CEEEEEc-CC-CCCEEEEEEc---CCCCEEEEEeCCCEEEEeC
Confidence 99642 2344554 67 5689999999 5678899999999999996
No 5
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.6e-47 Score=438.38 Aligned_cols=544 Identities=11% Similarity=0.105 Sum_probs=395.8
Q ss_pred cceeeccceeeeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCC----eeeeEEEeecccc-EEeEEecc--ccCC
Q 003423 7 SEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG----TLIRPFQVFHGIR-LHGISCNF--INCT 79 (821)
Q Consensus 7 ~~w~~~~~~~~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~----~~~~~~~~~~~~~-i~~i~~~~--~~~~ 79 (821)
.+|......|.+.|++++|+ |+ +++|+++.++.|+|||+.++ +.+..+..+.. . |.+++|+| ++
T Consensus 8 ~~~~~~~~~~~~~v~~~~~s--pd----g~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~-~~v~~~~~sp~~~~-- 78 (615)
T 1pgu_A 8 EIIPPQPSTQRNFTTHLSYD--PT----TNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS-SVVTTVKFSPIKGS-- 78 (615)
T ss_dssp EEECCCCCCCTTCCCCCEEE--TT----TTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTT-SCEEEEEECSSTTC--
T ss_pred hccCCCCCCccCceeEEEEC--CC----CCEEEEecCCeEEEEECCCCCCccccceEEecCCC-ceEEEEEECcCCCC--
Confidence 34555555688999999999 99 78899988999999999999 88888887665 6 99999997 53
Q ss_pred CCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECC---
Q 003423 80 EGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD--- 156 (821)
Q Consensus 80 ~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d--- 156 (821)
..++++..++.|++|++..+.. ......+....+.+|...|.+++|+| ++++|++++.+
T Consensus 79 --------~~l~s~~~dg~v~vw~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~~~~~ 140 (615)
T 1pgu_A 79 --------QYLCSGDESGKVIVWGWTFDKE-------SNSVEVNVKSEFQVLAGPISDISWDF---EGRRLCVVGEGRDN 140 (615)
T ss_dssp --------CEEEEEETTSEEEEEEEEEEGG-------GTEEEEEEEEEEECCSSCEEEEEECT---TSSEEEEEECCSSC
T ss_pred --------CEEEEecCCCEEEEEeCCCCcc-------cccccccccchhhcccccEEEEEEeC---CCCEEEEeccCCCC
Confidence 2455556689999999974310 00001356778889999999999999 99999999987
Q ss_pred -CcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCe-EEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCc
Q 003423 157 -NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (821)
Q Consensus 157 -~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (821)
+.|++|| .++.+..+..+.. .+.++.| ++++. ++++++.||.|++||..
T Consensus 141 ~~~v~~~d--~~~~~~~~~~~~~-~v~~~~~---~~~~~~~l~~~~~d~~v~vwd~~----------------------- 191 (615)
T 1pgu_A 141 FGVFISWD--SGNSLGEVSGHSQ-RINACHL---KQSRPMRSMTVGDDGSVVFYQGP----------------------- 191 (615)
T ss_dssp SEEEEETT--TCCEEEECCSCSS-CEEEEEE---CSSSSCEEEEEETTTEEEEEETT-----------------------
T ss_pred ccEEEEEE--CCCcceeeecCCc-cEEEEEE---CCCCCcEEEEEeCCCcEEEEeCC-----------------------
Confidence 6888888 5667777766554 4677777 46666 89999999999999988
Q ss_pred ceeeecccccceeeEEEEecCCC---cEEEEEEcCC-CCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEE-e---c
Q 003423 235 KCFKLQDQQHTAVNLFRLVGHEG---SIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL-Y---G 306 (821)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~h~~---~I~~l~~s~~-~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~---~ 306 (821)
..+.+..+.+|.+ .|.+++|+|+ +++|++++.|+.|++||+.+++. . ..+ . +
T Consensus 192 ----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-----~-----~~~~~~~~~ 251 (615)
T 1pgu_A 192 ----------PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF-----L-----KYIEDDQEP 251 (615)
T ss_dssp ----------TBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE-----E-----EECCBTTBC
T ss_pred ----------CcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCE-----e-----EEecccccc
Confidence 6778888999999 9999999999 99999999999999999988765 2 344 4 8
Q ss_pred cceeEEEEEEc-CCEEEEEeCCCeEEEEcC-CCceeeEeeccc---CCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC-c
Q 003423 307 HNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHI---GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-F 380 (821)
Q Consensus 307 h~~~i~~v~~~-~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~---~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~-~ 380 (821)
|...|.+++|+ +.+|++++.|+.|++||+ +++.+..+..+. ...+.++.+. +++++++++.||.|++||+.. .
T Consensus 252 ~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~ 330 (615)
T 1pgu_A 252 VQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDE 330 (615)
T ss_dssp CCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEE
T ss_pred cCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCc
Confidence 99999999995 789999999999999999 688888887762 1257788885 889999999999999999854 2
Q ss_pred CCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeee
Q 003423 381 LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQ 460 (821)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~ 460 (821)
.+.. +..|...|.+++| |+ ++.++.+|.+. +|+.. .+.
T Consensus 331 ~~~~------------------------------~~~~~~~v~~~~~-~~--l~~~~~dg~i~---~w~~~-----~~~- 368 (615)
T 1pgu_A 331 VLKT------------------------------ISGHNKGITALTV-NP--LISGSYDGRIM---EWSSS-----SMH- 368 (615)
T ss_dssp EEEE------------------------------ECCCSSCEEEEET-TT--TEEEETTSCEE---ETTTT-----EEE-
T ss_pred EEEE------------------------------EeCCCCCEEEEEe-cC--cEEECCCCeEE---EEEch-----hhc-
Confidence 1222 2334556777777 66 55566666664 55543 111
Q ss_pred ccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCc--------------------
Q 003423 461 VSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGI-------------------- 520 (821)
Q Consensus 461 ~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~-------------------- 520 (821)
..+...+.++.+ + .+..+++++.+|.+++|++....... ....+.++++.
T Consensus 369 ~~~~~~v~~~~~-~--------~~~~l~~~~~d~~i~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 438 (615)
T 1pgu_A 369 QDHSNLIVSLDN-S--------KAQEYSSISWDDTLKVNGITKHEFGS-QPKVASANNDGFTAVLTNDDDLLILQSFTGD 438 (615)
T ss_dssp CCCCSCEEEEEC-C--------STTCCEEEETTTEEEETTEEEEECSS-CEEEEEECSSSEEEEEETTSEEEEEETTTCC
T ss_pred CcccCceEEEEE-C--------CCcEEEEEeCCCCEEEEEcccCcccC-CceEEEEcCCCCEEEEeCCCceEEEeccCCc
Confidence 334556666655 2 23566667777777777665432211 11111121111
Q ss_pred -------cceeeeeEEeecCCCeEEEEECC-CCcEEEeeecCCCCcccccCCccceeeee-EEEecccCceEEEEEeecC
Q 003423 521 -------ERQLLGTYWCKSLGHRFIFTADP-KGRLKLWQLCDPFSSVCYESSKTNNVFLV-AEFSSCFGARIMCLDASFE 591 (821)
Q Consensus 521 -------~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~I~~l~~s~~ 591 (821)
...+..+ +++ ++++++++. ||.|++||+... ++. ..+ ..|...|++++|+|+
T Consensus 439 ~~~~~~~~~~~~~~--~~~--~~~l~~~~~~d~~i~~~~~~~~--------------~~~~~~~-~~~~~~v~~~~~s~~ 499 (615)
T 1pgu_A 439 IIKSVRLNSPGSAV--SLS--QNYVAVGLEEGNTIQVFKLSDL--------------EVSFDLK-TPLRAKPSYISISPS 499 (615)
T ss_dssp EEEEEECSSCEEEE--EEC--SSEEEEEETTTSCEEEEETTEE--------------EEEEECS-SCCSSCEEEEEECTT
T ss_pred eeeecccCCCceEE--EEc--CCEEEEeecCCCeEEEEECCCc--------------ccccccc-CCccCceEEEEECCC
Confidence 1111111 222 688999999 999999998865 222 333 678999999999999
Q ss_pred CCEEEEEcCCCcEEEEecCcccccccccccccccCcccccccccCCcceEEEEEEecC-------CCceEEEEecCCCeE
Q 003423 592 DEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLR-------SNQTEIRSTGGDGCI 664 (821)
Q Consensus 592 ~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~-------~~~~~l~t~g~Dg~i 664 (821)
+++|++|+.||.|++||+... ..+..+.+.| ...|++++|+|.. .++.+|++++.||+|
T Consensus 500 g~~l~~~~~dg~i~iw~~~~~-------------~~~~~~~~~h-~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i 565 (615)
T 1pgu_A 500 ETYIAAGDVMGKILLYDLQSR-------------EVKTSRWAFR-TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNI 565 (615)
T ss_dssp SSEEEEEETTSCEEEEETTTT-------------EEEECCSCCC-SSCEEEEEECCCC------CCSCCEEEEEETTSCE
T ss_pred CCEEEEcCCCCeEEEeeCCCC-------------cceeEeecCC-CCceeEEEEcCccccccccccCCCEEEEEcCCCcE
Confidence 999999999999999999742 2334443336 6689999999521 167899999999999
Q ss_pred EEEEeecCC-ceeeeeeeeeeeeeeeeeeeccCCCccCCCCCeEEEeeecccEEEEECcc
Q 003423 665 CYLEYDKDR-ESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLIT 723 (821)
Q Consensus 665 ~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~vW~~~~ 723 (821)
++|+++... ....+.++ ...+..+ .+.+++. |++++.|+.+.+|++.+
T Consensus 566 ~iw~~~~~~~~~~~~~~h-----~~~v~~l-----~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 566 FIYSVKRPMKIIKALNAH-----KDGVNNL-----LWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEESSCTTCCEEETTSS-----TTCEEEE-----EEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EEEECCCCceechhhhcC-----ccceEEE-----EEcCCCC-eEEecCCceEEEEeeec
Confidence 999997642 21111111 1111111 1234466 99999999999999765
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.3e-47 Score=469.20 Aligned_cols=621 Identities=11% Similarity=0.136 Sum_probs=427.4
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
|.++|++++|+ |+ +.+|++|. |+.|+|||+.+++.+.++..+.. .|.+++|+|++ ..+++++
T Consensus 614 h~~~v~~~~~s--~~----~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~-~v~~~~~s~~~----------~~l~s~~ 676 (1249)
T 3sfz_A 614 HTDAVYHACFS--QD----GQRIASCGADKTLQVFKAETGEKLLDIKAHED-EVLCCAFSSDD----------SYIATCS 676 (1249)
T ss_dssp CSSCEEEEEEC--TT----SSEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTS----------SEEEEEE
T ss_pred ccccEEEEEEC--CC----CCEEEEEeCCCeEEEEECCCCCEEEEeccCCC-CEEEEEEecCC----------CEEEEEe
Confidence 78899999999 98 67777765 89999999999999999987665 79999999763 2556666
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEc
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 174 (821)
.|+.|++||+..+ +.+..+.+|...|.+++|+|. .++.++++|+.|+.|++||+.+++.+..+.
T Consensus 677 ~d~~v~vwd~~~~---------------~~~~~~~~~~~~v~~~~~~~~-~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~ 740 (1249)
T 3sfz_A 677 ADKKVKIWDSATG---------------KLVHTYDEHSEQVNCCHFTNK-SNHLLLATGSNDFFLKLWDLNQKECRNTMF 740 (1249)
T ss_dssp TTSEEEEEETTTC---------------CEEEEEECCSSCEEEEEECSS-SSCCEEEEEETTSCEEEEETTSSSEEEEEC
T ss_pred CCCeEEEEECCCC---------------ceEEEEcCCCCcEEEEEEecC-CCceEEEEEeCCCeEEEEECCCcchhheec
Confidence 7899999998743 567788899999999999981 134589999999999999999999988888
Q ss_pred cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEec
Q 003423 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (821)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (821)
.+.. .+.++.| ++++.++++|+.||.|++||+........ +.... ...........
T Consensus 741 ~h~~-~v~~~~~---sp~~~~l~s~s~dg~v~vwd~~~~~~~~~------------------~~~~~--~~~~~~~~~~~ 796 (1249)
T 3sfz_A 741 GHTN-SVNHCRF---SPDDELLASCSADGTLRLWDVRSANERKS------------------INVKR--FFLSSEDPPED 796 (1249)
T ss_dssp CCSS-CEEEEEE---CSSTTEEEEEESSSEEEEEEGGGTEEEEE------------------EECCC--CC--------C
T ss_pred CCCC-CEEEEEE---ecCCCEEEEEECCCeEEEEeCCCCcccce------------------ecccc--cccccCCcccc
Confidence 7665 4667777 57899999999999999999982210000 00000 00000001123
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEE
Q 003423 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRV 332 (821)
Q Consensus 255 h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~i 332 (821)
+...|.+++|+|+++.+++++ ++.+.+||+.++.. .. ....+|...|.+++|+ +.++++++.||.+++
T Consensus 797 ~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~-----~~----~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~v 866 (1249)
T 3sfz_A 797 VEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGL-----LA----EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL 866 (1249)
T ss_dssp CCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCE-----EE----EEECSSSSCCCEEEECSSTTEEEEECSSSCEEE
T ss_pred ccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCc-----ee----EEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEE
Confidence 445789999999999999887 68999999998765 32 2445899999999998 589999999999999
Q ss_pred EcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCC-cccC-CccccccCCCcc-eEEeecCCc
Q 003423 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPG-SLES-HPEAKEFNGRTE-IFSIKIPNF 408 (821)
Q Consensus 333 wd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~-~~~~-~~~~~~~~~~~~-~~~~~~~~~ 408 (821)
|++ ++..+..+.+|.+ .|++++|+|++++|++++.||.|++|++...... .... ......+..... +........
T Consensus 867 wd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1249)
T 3sfz_A 867 WNIDSRLKVADCRGHLS-WVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRG 945 (1249)
T ss_dssp EETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSS
T ss_pred EEcCCCceeeecCCCcc-ceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcc
Confidence 999 7888889999998 6999999999999999999999999998432111 0000 000000000000 000000000
Q ss_pred cc-----ceeccCCCCcceEEEEeecCCeEEE-EecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCC
Q 003423 409 SE-----QIRLTDSKSEYVRCLHLTSEDTLYI-ATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCG 482 (821)
Q Consensus 409 ~~-----~~~~~~~~~~~i~~l~f~~~~~~l~-~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~ 482 (821)
.. ...........+.+++|+|++.+++ ++.+|.+..+++... ....... .+...+.++.+.+
T Consensus 946 ~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~---~~~~~~~-~h~~~v~~l~~s~-------- 1013 (1249)
T 3sfz_A 946 LQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN---RVFSSGV-GHKKAVRHIQFTA-------- 1013 (1249)
T ss_dssp EEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT---SCEEECC-CCSSCCCCEEECS--------
T ss_pred eEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC---ceeeecc-cCCCceEEEEECC--------
Confidence 00 0000011245699999999986655 456777775554432 2112222 2355666776654
Q ss_pred CCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCccccc
Q 003423 483 IDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYE 562 (821)
Q Consensus 483 ~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 562 (821)
+++++++++.||.|++|++.++.... .......+.. ..++++ ..+++++.||.|++||+..+
T Consensus 1014 dg~~l~s~~~dg~i~vwd~~~~~~~~--------~~~~~~~v~~--~~~~~~-~~l~~~~~dg~v~vwd~~~~------- 1075 (1249)
T 3sfz_A 1014 DGKTLISSSEDSVIQVWNWQTGDYVF--------LQAHQETVKD--FRLLQD-SRLLSWSFDGTVKVWNVITG------- 1075 (1249)
T ss_dssp SSSCEEEECSSSBEEEEETTTTEEEC--------CBCCSSCEEE--EEECSS-SEEEEEESSSEEEEEETTTT-------
T ss_pred CCCEEEEEcCCCEEEEEECCCCceEE--------EecCCCcEEE--EEEcCC-CcEEEEECCCcEEEEECCCC-------
Confidence 55899999999999999987754311 1111222222 234454 45678889999999999877
Q ss_pred CCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCcccccccccccccccCcccccccccCCcceEE
Q 003423 563 SSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVST 642 (821)
Q Consensus 563 ~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~ 642 (821)
++...+ ..|...|++++|+|++++|++|+.||.|++||+.. ..++..+. .| ...|++
T Consensus 1076 -------~~~~~~-~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~-------------~~~~~~l~-~h-~~~v~~ 1132 (1249)
T 3sfz_A 1076 -------RIERDF-TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDL-------------LSPLHELK-GH-NGCVRC 1132 (1249)
T ss_dssp -------CCCEEE-ECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSS-------------SSCSBCCC-CC-SSCEEE
T ss_pred -------ceeEEE-cccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC-------------cceeeeec-cC-CCcEEE
Confidence 344455 67899999999999999999999999999999873 23344453 55 568999
Q ss_pred EEEEecCCCceEEEEecCCCeEEEEEeecCCceeeeeeeeeeeeeeeeeeeccCCCccCCCCCeEEEeeecccEEEEECc
Q 003423 643 LSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLI 722 (821)
Q Consensus 643 i~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~vW~~~ 722 (821)
++|+ +++.+|++++.||+|++|++........+......... ..+...+....+.+++.+++++. +.+.+||..
T Consensus 1133 ~~~s---~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~ 1206 (1249)
T 3sfz_A 1133 SAFS---LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGT-ATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVA 1206 (1249)
T ss_dssp EEEC---SSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC--------CCSCCCEEEECTTSSCEEEES--SSEEEBCSS
T ss_pred EEEC---CCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccc-cccCceEEEEEECCCCCEEEECC--CeEEEEECC
Confidence 9999 56789999999999999999764432111100000000 00000111223446677788775 899999999
Q ss_pred cccEEEEEeeCCCCccceeecCCCCCcceeEEEEeeceEEEEcc
Q 003423 723 TEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKANQLWRLRD 766 (821)
Q Consensus 723 ~~~~l~~i~cgg~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 766 (821)
+++.+..+...+.. .++... .|.+...+....++.+++|+.
T Consensus 1207 ~g~~~~~~~~~~~~-i~~~~~--s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1207 TGDSSQTFYTNGTN-LKKIHV--SPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp SCBCCCCCCCSSCC-CCCCEE--CSSSCCEEEECTTCCEEEECC
T ss_pred CCceeeeeeccCCc-ccEEEE--CCCCCEEEEecCCcEEEEEee
Confidence 99888777654332 333332 233444555666678888874
No 7
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.4e-46 Score=429.10 Aligned_cols=519 Identities=16% Similarity=0.175 Sum_probs=388.5
Q ss_pred CCCCcceeeccc----e-------eeee-eEEEEEeccC--CCCCCcceEEeec-CCeEEEEECCCC--------eeeeE
Q 003423 3 KKDLSEWRLDVG----Q-------YLGE-ISALCFVHLP--SHLSSLPFLLAGS-GSQVLLYDLEAG--------TLIRP 59 (821)
Q Consensus 3 ~~~i~~w~~~~~----~-------~~~~-Vt~l~~~~~p--~~~~~~~~l~~g~-~~~i~iwd~~t~--------~~~~~ 59 (821)
++.+++|++.++ + |.++ |++++|+ | + +++|++|. |+.|+|||+.++ +.+..
T Consensus 38 ~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~s--p~~~----~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~ 111 (615)
T 1pgu_A 38 GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFS--PIKG----SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSE 111 (615)
T ss_dssp TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEEC--SSTT----CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEE
T ss_pred CCeEEEEECCCCCCccccceEEecCCCceEEEEEEC--cCCC----CCEEEEecCCCEEEEEeCCCCcccccccccccch
Confidence 578999999987 4 6778 9999999 9 8 67777766 899999999865 66666
Q ss_pred EEeeccccEEeEEeccccCCCCCCccceeeEEEEEcC----CeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcE
Q 003423 60 FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE----KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV 135 (821)
Q Consensus 60 ~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~----~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 135 (821)
+..+.. .|.+++|+|++ ..++++..+ +.|.+|+.. +....+.+|.+.|
T Consensus 112 ~~~~~~-~v~~~~~s~~~----------~~l~~~~~~~~~~~~v~~~d~~-----------------~~~~~~~~~~~~v 163 (615)
T 1pgu_A 112 FQVLAG-PISDISWDFEG----------RRLCVVGEGRDNFGVFISWDSG-----------------NSLGEVSGHSQRI 163 (615)
T ss_dssp EECCSS-CEEEEEECTTS----------SEEEEEECCSSCSEEEEETTTC-----------------CEEEECCSCSSCE
T ss_pred hhcccc-cEEEEEEeCCC----------CEEEEeccCCCCccEEEEEECC-----------------CcceeeecCCccE
Confidence 665544 79999999763 234444444 578888721 4567888999999
Q ss_pred EEEEEeecCCCCC-EEEEEECCCcEEEEEccCCceeEEEccCcce--eEEEEeeccCCcc-CeEEEEEeeCCEEEEEEcc
Q 003423 136 FDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERC--LLYSMKLWGDNLE-ALRIASGTIYNEIIVWKVD 211 (821)
Q Consensus 136 ~~~~~~~~~~~~~-~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~s~~~~~~s~~-~~~l~sg~~dg~i~vwd~~ 211 (821)
.+++|+| +++ .|++++.|+.|++||+.+++.+..+..+... .+.+++| +++ +.+|++++.||.|++||+.
T Consensus 164 ~~~~~~~---~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~l~~~~~dg~i~vwd~~ 237 (615)
T 1pgu_A 164 NACHLKQ---SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEF---SPDSGEFVITVGSDRKISCFDGK 237 (615)
T ss_dssp EEEEECS---SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEE---CSTTCCEEEEEETTCCEEEEETT
T ss_pred EEEEECC---CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEE---CCCCCCEEEEEeCCCeEEEEECC
Confidence 9999999 887 8999999999999999999998888876541 4667777 578 8999999999999999998
Q ss_pred cCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE-e---cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeccc
Q 003423 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-V---GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (821)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~ 287 (821)
..+.+..+ . +|.+.|.+++|+ ++++|++++.|+.|++||+.+
T Consensus 238 ---------------------------------~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~ 283 (615)
T 1pgu_A 238 ---------------------------------SGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTT 283 (615)
T ss_dssp ---------------------------------TCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTT
T ss_pred ---------------------------------CCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCC
Confidence 56677777 5 899999999999 999999999999999999998
Q ss_pred CcccCCCCceeeeceEEecc----ceeEEEEEEc-CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCC
Q 003423 288 EYWKDSDSIEEVGSSVLYGH----NARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS 361 (821)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~h----~~~i~~v~~~-~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~ 361 (821)
++. . ..+..+ ...+.++.|. +.++++++.|+.+++||+ .++.+..+.+|.. .|.+++| |+
T Consensus 284 ~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~-~v~~~~~-~~-- 349 (615)
T 1pgu_A 284 SKC-----V-----QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNK-GITALTV-NP-- 349 (615)
T ss_dssp TEE-----E-----EEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSS-CEEEEET-TT--
T ss_pred CcE-----E-----EEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCC-CEEEEEe-cC--
Confidence 654 3 244444 4678888885 799999999999999999 5788889999988 6999999 87
Q ss_pred EEEEEeCCCcEEEEEcCCcCCC-cccCCccccccCCCcceEEeecCCcccceeccCCC----CcceEEEEeecCCeEEEE
Q 003423 362 LLVTAGFDSAIKVHQFQAFLPG-SLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSK----SEYVRCLHLTSEDTLYIA 436 (821)
Q Consensus 362 ~l~tg~~dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~l~f~~~~~~l~~ 436 (821)
+++++.||.|++|++. .+. ........+.+.+...+..... .+.+..++.. ...+.+++++|++.+++.
T Consensus 350 -l~~~~~dg~i~~w~~~--~~~~~~~~~v~~~~~~~~~~l~~~~~---d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 423 (615)
T 1pgu_A 350 -LISGSYDGRIMEWSSS--SMHQDHSNLIVSLDNSKAQEYSSISW---DDTLKVNGITKHEFGSQPKVASANNDGFTAVL 423 (615)
T ss_dssp -TEEEETTSCEEETTTT--EEECCCCSCEEEEECCSTTCCEEEET---TTEEEETTEEEEECSSCEEEEEECSSSEEEEE
T ss_pred -cEEECCCCeEEEEEch--hhcCcccCceEEEEECCCcEEEEEeC---CCCEEEEEcccCcccCCceEEEEcCCCCEEEE
Confidence 9999999999999986 111 1111111222221222221111 1111111111 114788899999988888
Q ss_pred ecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecC-CccEEEEEecCCCCCCcceeEEe
Q 003423 437 TNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDG-KGNMTIVRVVGDVHTPQLSFTFT 515 (821)
Q Consensus 437 ~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~-~g~i~i~~~~~~~~~~~~~~~~~ 515 (821)
+..+.+..+.+.+. . .+........+.++.+. ++++++++. +|.|++|++.+..... ..
T Consensus 424 ~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~----------~~~l~~~~~~d~~i~~~~~~~~~~~~-----~~ 483 (615)
T 1pgu_A 424 TNDDDLLILQSFTG---D--IIKSVRLNSPGSAVSLS----------QNYVAVGLEEGNTIQVFKLSDLEVSF-----DL 483 (615)
T ss_dssp ETTSEEEEEETTTC---C--EEEEEECSSCEEEEEEC----------SSEEEEEETTTSCEEEEETTEEEEEE-----EC
T ss_pred eCCCceEEEeccCC---c--eeeecccCCCceEEEEc----------CCEEEEeecCCCeEEEEECCCccccc-----cc
Confidence 77777664444222 2 22222345667777664 379999999 9999999987642210 11
Q ss_pred eccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecc-cCceEEEEEeec----
Q 003423 516 WSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSC-FGARIMCLDASF---- 590 (821)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~I~~l~~s~---- 590 (821)
.......+. ..+++|++++|++++.||.|++||+... ++...+ .. |...|++++|+|
T Consensus 484 -~~~~~~~v~--~~~~s~~g~~l~~~~~dg~i~iw~~~~~--------------~~~~~~-~~~h~~~v~~~~~sp~~~~ 545 (615)
T 1pgu_A 484 -KTPLRAKPS--YISISPSETYIAAGDVMGKILLYDLQSR--------------EVKTSR-WAFRTSKINAISWKPAEKG 545 (615)
T ss_dssp -SSCCSSCEE--EEEECTTSSEEEEEETTSCEEEEETTTT--------------EEEECC-SCCCSSCEEEEEECCCC--
T ss_pred -cCCccCceE--EEEECCCCCEEEEcCCCCeEEEeeCCCC--------------cceeEe-ecCCCCceeEEEEcCcccc
Confidence 111122222 2357889999999999999999999876 555555 44 999999999999
Q ss_pred ------CCCEEEEEcCCCcEEEEecCcccccccccccccccCcccccccccCCcceEEEEEEecCCCceEEEEecCCCeE
Q 003423 591 ------EDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCI 664 (821)
Q Consensus 591 ------~~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~t~g~Dg~i 664 (821)
++++|++|+.||.|++|++... ...+..+. .| ...|++++|.| ++. |++++.||+|
T Consensus 546 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~------------~~~~~~~~-~h-~~~v~~l~~s~---~~~-l~s~~~d~~v 607 (615)
T 1pgu_A 546 ANEEEIEEDLVATGSLDTNIFIYSVKRP------------MKIIKALN-AH-KDGVNNLLWET---PST-LVSSGADACI 607 (615)
T ss_dssp ----CCSCCEEEEEETTSCEEEEESSCT------------TCCEEETT-SS-TTCEEEEEEEE---TTE-EEEEETTSCE
T ss_pred ccccccCCCEEEEEcCCCcEEEEECCCC------------ceechhhh-cC-ccceEEEEEcC---CCC-eEEecCCceE
Confidence 9999999999999999999742 12344443 56 67899999995 456 9999999999
Q ss_pred EEEEeec
Q 003423 665 CYLEYDK 671 (821)
Q Consensus 665 ~iw~~~~ 671 (821)
++|+++.
T Consensus 608 ~iw~~~~ 614 (615)
T 1pgu_A 608 KRWNVVL 614 (615)
T ss_dssp EEEEEC-
T ss_pred EEEeeec
Confidence 9999964
No 8
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.5e-46 Score=464.10 Aligned_cols=550 Identities=15% Similarity=0.226 Sum_probs=406.3
Q ss_pred CCCCCcceeeccce-------eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEe
Q 003423 2 GKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISC 73 (821)
Q Consensus 2 ~~~~i~~w~~~~~~-------~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~ 73 (821)
.|++|++||+.+++ |.++|++++|+ |+ +.+|++|. |+.|+|||+.+++.+..+..+.. .|.++.|
T Consensus 635 ~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s--~~----~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~v~~~~~ 707 (1249)
T 3sfz_A 635 ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFS--SD----DSYIATCSADKKVKIWDSATGKLVHTYDEHSE-QVNCCHF 707 (1249)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEEC--TT----SSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEeccCCCCEEEEEEe--cC----CCEEEEEeCCCeEEEEECCCCceEEEEcCCCC-cEEEEEE
Confidence 58899999999986 67889999999 98 66777765 89999999999999999987655 7999999
Q ss_pred ccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEE
Q 003423 74 NFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (821)
Q Consensus 74 ~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~ 153 (821)
++.. +. ..++++..|+.|++||+..+ +....+.+|.+.|++++|+| ++++|++|
T Consensus 708 ~~~~-----~~---~~l~sg~~d~~v~vwd~~~~---------------~~~~~~~~h~~~v~~~~~sp---~~~~l~s~ 761 (1249)
T 3sfz_A 708 TNKS-----NH---LLLATGSNDFFLKLWDLNQK---------------ECRNTMFGHTNSVNHCRFSP---DDELLASC 761 (1249)
T ss_dssp CSSS-----SC---CEEEEEETTSCEEEEETTSS---------------SEEEEECCCSSCEEEEEECS---STTEEEEE
T ss_pred ecCC-----Cc---eEEEEEeCCCeEEEEECCCc---------------chhheecCCCCCEEEEEEec---CCCEEEEE
Confidence 9642 10 13444456899999998753 46778889999999999999 99999999
Q ss_pred ECCCcEEEEEccCCceeEEEccCc------------ceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCC
Q 003423 154 CSDNSIRVWDISNSSIILEVHSPE------------RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNS 221 (821)
Q Consensus 154 ~~d~~i~iwd~~~~~~~~~~~~~~------------~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 221 (821)
+.||.|++||+.++.....+.... ...+.++.| ++++..+++++ ++.+.+||..
T Consensus 762 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---s~dg~~l~~~~-~~~v~~~d~~---------- 827 (1249)
T 3sfz_A 762 SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW---SADGDKIIVAA-KNKVLLFDIH---------- 827 (1249)
T ss_dssp ESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB---CTTSSEEEEEE-TTEEEEEETT----------
T ss_pred ECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE---CCCCCEEEEEc-CCcEEEEEec----------
Confidence 999999999999988776654221 112333333 68888988886 7999999998
Q ss_pred CCCcccCCCCCCcceeeecccccceeeEEEE-ecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeee
Q 003423 222 PEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300 (821)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 300 (821)
.......+ .+|.+.|.+++|+|+++++++++.|+.|++||+.++.. .
T Consensus 828 -----------------------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~-----~---- 875 (1249)
T 3sfz_A 828 -----------------------TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK-----V---- 875 (1249)
T ss_dssp -----------------------TCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEE-----E----
T ss_pred -----------------------CCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce-----e----
Confidence 33444444 48999999999999999999999999999999998654 3
Q ss_pred ceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcCCCc------------------------------eeeEe-----
Q 003423 301 SSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGK------------------------------QLKMI----- 343 (821)
Q Consensus 301 ~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~~~------------------------------~~~~~----- 343 (821)
..+.+|...|++++|+ +.++++++.||++++|++... .....
T Consensus 876 -~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1249)
T 3sfz_A 876 -ADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG 954 (1249)
T ss_dssp -EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSC
T ss_pred -eecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcc
Confidence 5788999999999998 579999999999999996210 00001
Q ss_pred ---ecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCc
Q 003423 344 ---KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSE 420 (821)
Q Consensus 344 ---~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (821)
..+.. .+.+++++|+++++++|+.||.|++|++..... ......|..
T Consensus 955 ~~~~~~~~-~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~-----------------------------~~~~~~h~~ 1004 (1249)
T 3sfz_A 955 QIDYLPEA-QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV-----------------------------FSSGVGHKK 1004 (1249)
T ss_dssp CEEEECCS-CEEEEEECTTSSEEEEEETTSCCEEEETTTTSC-----------------------------EEECCCCSS
T ss_pred eEEEcccC-cEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCce-----------------------------eeecccCCC
Confidence 11223 589999999999999999999999999854210 112234567
Q ss_pred ceEEEEeecCCeEEEEe-cCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEE
Q 003423 421 YVRCLHLTSEDTLYIAT-NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIV 499 (821)
Q Consensus 421 ~i~~l~f~~~~~~l~~~-~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~ 499 (821)
.|.+++|+|++.+++++ .+|.+. +|+..+... .....+...+.++.+.+ +..+++++.+|.+++|
T Consensus 1005 ~v~~l~~s~dg~~l~s~~~dg~i~---vwd~~~~~~--~~~~~~~~~v~~~~~~~---------~~~l~~~~~dg~v~vw 1070 (1249)
T 3sfz_A 1005 AVRHIQFTADGKTLISSSEDSVIQ---VWNWQTGDY--VFLQAHQETVKDFRLLQ---------DSRLLSWSFDGTVKVW 1070 (1249)
T ss_dssp CCCCEEECSSSSCEEEECSSSBEE---EEETTTTEE--ECCBCCSSCEEEEEECS---------SSEEEEEESSSEEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCEEE---EEECCCCce--EEEecCCCcEEEEEEcC---------CCcEEEEECCCcEEEE
Confidence 79999999998766654 566776 444444332 22234566777777754 3578899999999999
Q ss_pred EecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEeccc
Q 003423 500 RVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCF 579 (821)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h 579 (821)
++.++... ..+..+.. .+.. .+++|+++++++++.||.|++||+.... +...+ .+|
T Consensus 1071 d~~~~~~~----~~~~~~~~---~v~~--~~~s~d~~~l~s~s~d~~v~iwd~~~~~--------------~~~~l-~~h 1126 (1249)
T 3sfz_A 1071 NVITGRIE----RDFTCHQG---TVLS--CAISSDATKFSSTSADKTAKIWSFDLLS--------------PLHEL-KGH 1126 (1249)
T ss_dssp ETTTTCCC----EEEECCSS---CCCC--EEECSSSSSCEEECCSSCCCEECSSSSS--------------CSBCC-CCC
T ss_pred ECCCCcee----EEEcccCC---cEEE--EEECCCCCEEEEEcCCCcEEEEECCCcc--------------eeeee-ccC
Confidence 99876532 12222221 1222 3567889999999999999999998762 23333 678
Q ss_pred CceEEEEEeecCCCEEEEEcCCCcEEEEecCcccccccccccccccCccccc--ccccCCcceEEEEEEecCCCceEEEE
Q 003423 580 GARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYF--KGAHGISTVSTLSVAKLRSNQTEIRS 657 (821)
Q Consensus 580 ~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~~Vt~i~~~~~~~~~~~l~t 657 (821)
...|++++|+|++++|++|+.||.|++||+....... ...+.... ...| ...|++++|+ +++.+|++
T Consensus 1127 ~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~-------~~~~~~~~~~~~~~-~~~v~~l~fs---~dg~~l~s 1195 (1249)
T 3sfz_A 1127 NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH-------SCAPISVEEGTATH-GGWVTDVCFS---PDSKTLVS 1195 (1249)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCC-------CCCCCC-------C-CSCCCEEEEC---TTSSCEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE-------Eecccccccccccc-CceEEEEEEC---CCCCEEEE
Confidence 9999999999999999999999999999987431100 11111111 1145 5689999999 56678888
Q ss_pred ecCCCeEEEEEeecCCceeeeeeeeeeeeeeeeeeeccCCCccCCCCCeEEEeeecccEEEEECc
Q 003423 658 TGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLI 722 (821)
Q Consensus 658 ~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~vW~~~ 722 (821)
++ |.+++|+++.......+.+. ...+....+.+++..+++|..++.+.+|++.
T Consensus 1196 ~~--g~v~vwd~~~g~~~~~~~~~----------~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1196 AG--GYLKWWNVATGDSSQTFYTN----------GTNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp ES--SSEEEBCSSSCBCCCCCCCS----------SCCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred CC--CeEEEEECCCCceeeeeecc----------CCcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence 86 89999999664332111110 0011223345667789999999999999863
No 9
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-42 Score=407.50 Aligned_cols=656 Identities=11% Similarity=0.042 Sum_probs=408.3
Q ss_pred eeeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEE
Q 003423 15 QYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (821)
Q Consensus 15 ~~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~ 93 (821)
.|.+.|++++|+ |+ +.+||+|. |+.|+|||..+++.+..+. +...|.+++|++ + ..++++
T Consensus 15 gh~~~V~~lafs--pd----g~~lAsgs~Dg~I~lw~~~~~~~~~~~~--~~~~V~~l~fsp-g----------~~L~S~ 75 (902)
T 2oaj_A 15 GMSSKPIAAAFD--FT----QNLLAIATVTGEVHIYGQQQVEVVIKLE--DRSAIKEMRFVK-G----------IYLVVI 75 (902)
T ss_dssp ECSSCEEEEEEE--TT----TTEEEEEETTSEEEEECSTTCEEEEECS--SCCCEEEEEEET-T----------TEEEEE
T ss_pred CCCCCcEEEEEC--CC----CCEEEEEeCCCEEEEEeCCCcEEEEEcC--CCCCEEEEEEcC-C----------CEEEEE
Confidence 377899999999 99 67888877 8999999998887765543 345799999996 3 346667
Q ss_pred EcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCcee-EE
Q 003423 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII-LE 172 (821)
Q Consensus 94 ~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~-~~ 172 (821)
..|+.|++||+..+ +.+..+. |.+.|++++|+| ++++|++|+.||.|++||+.+++.. ..
T Consensus 76 s~D~~v~lWd~~~~---------------~~~~~~~-~~~~V~~v~~sp---~g~~l~sgs~dg~V~lwd~~~~~~~~~~ 136 (902)
T 2oaj_A 76 NAKDTVYVLSLYSQ---------------KVLTTVF-VPGKITSIDTDA---SLDWMLIGLQNGSMIVYDIDRDQLSSFK 136 (902)
T ss_dssp ETTCEEEEEETTTC---------------SEEEEEE-CSSCEEEEECCT---TCSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ECcCeEEEEECCCC---------------cEEEEEc-CCCCEEEEEECC---CCCEEEEEcCCCcEEEEECCCCccccce
Confidence 77999999998753 3444554 678999999999 9999999999999999999988753 11
Q ss_pred E-------c--cCcceeEEEEeeccCCc-cCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccc
Q 003423 173 V-------H--SPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (821)
Q Consensus 173 ~-------~--~~~~~~~~s~~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (821)
+ . ..+...+.+++|. | +...+++|+.||.| +||+.
T Consensus 137 i~~~~~~~~~~~~h~~~V~sl~~s---p~~~~~l~~g~~dg~v-lWd~~------------------------------- 181 (902)
T 2oaj_A 137 LDNLQKSSFFPAARLSPIVSIQWN---PRDIGTVLISYEYVTL-TYSLV------------------------------- 181 (902)
T ss_dssp ECCHHHHHTCSSSCCCCCCEEEEE---TTEEEEEEEECSSCEE-EEETT-------------------------------
T ss_pred eccccccccccccCCCCeEEEEEc---cCCCCEEEEEeCCCcE-EEECC-------------------------------
Confidence 1 0 1122346677773 4 45789999999999 99998
Q ss_pred ccceeeEEEEec------------------CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEE
Q 003423 243 QHTAVNLFRLVG------------------HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (821)
Q Consensus 243 ~~~~~~~~~~~~------------------h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 304 (821)
..+.+..+.+ |...|.+++|+|+|++|++++.||+|++||+++++. +........
T Consensus 182 --~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~-----~~~r~l~~~ 254 (902)
T 2oaj_A 182 --ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM-----IMARTVFET 254 (902)
T ss_dssp --TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE-----EEEECSSCS
T ss_pred --CCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE-----EEEEeeccc
Confidence 3344444443 468899999999999999999999999999988654 211000000
Q ss_pred e-------------ccceeEEEEEEc----C---CEEEEEeCC-----CeEEEEcCC-------------------Ccee
Q 003423 305 Y-------------GHNARVWDCCLT----D---SFIITAGED-----CTCRVWGSD-------------------GKQL 340 (821)
Q Consensus 305 ~-------------~h~~~i~~v~~~----~---~~l~s~~~d-----g~i~iwd~~-------------------~~~~ 340 (821)
. .|..+|++++|+ + ..+++++.| ..+++|++. ++..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 334 (902)
T 2oaj_A 255 EINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQM 334 (902)
T ss_dssp CTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEE
T ss_pred ccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccce
Confidence 1 245689999994 2 357777666 378888841 2233
Q ss_pred eEee-cccCCCeEEEEEec----------CCCEEEEEeCCCcEEEEEcCCc-CC-CcccCCccccccCCCcceEEeecC-
Q 003423 341 KMIK-EHIGRGIWRCLYDS----------LSSLLVTAGFDSAIKVHQFQAF-LP-GSLESHPEAKEFNGRTEIFSIKIP- 406 (821)
Q Consensus 341 ~~~~-~h~~~~i~~l~~~~----------~~~~l~tg~~dg~I~iwd~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~- 406 (821)
..+. .+.. .|..+.+.+ +...+++++.||.|++|++... .. .....+. .+... ...+..+...
T Consensus 335 ~~~~~~~~~-~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~-~l~~~-~~~v~~~~~s~ 411 (902)
T 2oaj_A 335 KIFPLPTNV-PIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQ-NLSWL-RPLATTSMAAS 411 (902)
T ss_dssp EEECCSSSS-CEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCG-GGTTB-TTBEEEEEEEE
T ss_pred EEEecCCCC-ceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCC-ccccc-CCCeeEEEEEE
Confidence 3443 2444 588888755 3347899999999999998432 11 1111110 00000 0111111100
Q ss_pred -----------CcccceeccCCCCcceEEEEeecCCeEEEEe-cCCcEEEEEecCCCcceeeEeee--------ccCCcc
Q 003423 407 -----------NFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT-NHGYLYHTKLCDMDSVNWNKILQ--------VSEGMP 466 (821)
Q Consensus 407 -----------~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~-~~g~~~~~~i~~~~~~~~~~~~~--------~~~~~~ 466 (821)
........+.+|...+.+++|+|++.+++++ .++.+..|++....... ...+. ..+...
T Consensus 412 ~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~-~~~~~~~l~~~~~~~h~~~ 490 (902)
T 2oaj_A 412 VPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD-NASFEVNLSRTLNKAKELA 490 (902)
T ss_dssp EEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT-TBCEEEEHHHHTTCSSSCC
T ss_pred cCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC-CceEEeechhhcCCCCCCc
Confidence 0011112345666678889999998777765 55666544443321100 00111 134567
Q ss_pred eEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCC--------c---------------c-------------
Q 003423 467 IICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP--------Q---------------L------------- 510 (821)
Q Consensus 467 i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~--------~---------------~------------- 510 (821)
+.++++.+ +++++|+|+.||+|++|++.++.... . .
T Consensus 491 V~svafsp--------dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (902)
T 2oaj_A 491 VDKISFAA--------ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVR 562 (902)
T ss_dssp EEEEEEET--------TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCS
T ss_pred eeEEEecC--------CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCC
Confidence 88888866 45999999999999999998652100 0 0
Q ss_pred -e-eEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeE-----EEecccCceE
Q 003423 511 -S-FTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVA-----EFSSCFGARI 583 (821)
Q Consensus 511 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~h~~~I 583 (821)
. ..+.....+...+.. .+++|+| +||+|+.|++|+|||+... .++. .+..+|...|
T Consensus 563 ~g~~~~~~l~~h~~~V~s--vafSpdG-~lAsgs~D~tv~lwd~~~~--------------~~~~~~~~~~~~~gh~~~V 625 (902)
T 2oaj_A 563 QGFMPSTAVHANKGKTSA--INNSNIG-FVGIAYAAGSLMLIDRRGP--------------AIIYMENIREISGAQSACV 625 (902)
T ss_dssp EEEEEEEEECCCSCSEEE--EEECBTS-EEEEEETTSEEEEEETTTT--------------EEEEEEEGGGTCSSCCCCE
T ss_pred CccceeEEEEcCCCcEEE--EEecCCc-EEEEEeCCCcEEEEECCCC--------------eEEEEeehhHhccccccce
Confidence 0 001111112222332 3488999 9999999999999998664 2211 2212789999
Q ss_pred EEEEee-----cCC---CEEEEEcCCCcEEEEecCcccccccccccccccCccccccc----ccCCcceEEEEEEec---
Q 003423 584 MCLDAS-----FED---EVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKG----AHGISTVSTLSVAKL--- 648 (821)
Q Consensus 584 ~~l~~s-----~~~---~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~----~h~~~~Vt~i~~~~~--- 648 (821)
++++|+ ||| ++|++|+.||+|++||+.... .......+.+ .| +..|.+|.....
T Consensus 626 ~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~----------~g~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~ 694 (902)
T 2oaj_A 626 TCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPAS----------GGKFDVQLMDITNVTS-KGPIHKIDAFSKETK 694 (902)
T ss_dssp EEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECG----------GGCEEEEEEEEEECCS-SCCCCEEEEEETTTC
T ss_pred EEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCC----------CCcEEEEecCceecCC-CCceEEEEeEecCCC
Confidence 999999 885 899999999999999983110 1111222221 12 345655553220
Q ss_pred ----------------CCCceEEEEecCCCeEEEEEeecCCceeeeeeee-eeeeeeeeeeeccCCCccCCCCCeEEEee
Q 003423 649 ----------------RSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMK-QVKELSLIQSVSAENNSIDLASCNYAAGF 711 (821)
Q Consensus 649 ----------------~~~~~~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 711 (821)
.....+++.++ |..+|+|++...+......+.. .+..+..+.-... ..+..++..|++++
T Consensus 695 ~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ir~~~~~~~k~~~k~~~~~~~~~~v~~~~~~~~--~~~~~~~~~l~~~~ 771 (902)
T 2oaj_A 695 SSCLATIPKMQNLSKGLCIPGIVLITG-FDDIRLITLGKSKSTHKGFKYPLAATGLSYISTVEK--NNDRKNLTVIITLE 771 (902)
T ss_dssp CBCBCBHHHHHGGGGTCCCCEEEEEEC-SSEEEEECTTCCCEEEEECSSCEEEEEEEEEEEECS--SSCEEEEEEEEEEE
T ss_pred CcccCCHHHHhccCCCCCCCeEEEEEe-ccceEEEeCccccceeeEcccceeeeEEEEEEeccc--cccccCceEEEEEe
Confidence 01234566666 7789999996543221111110 1111100110000 11223355699999
Q ss_pred ecccEEEEECccccEEEEEeeCCCCccceeecCCCCCcceeEEEEeeceEEEEccccCceeeEEeeccccceeeeeeehh
Q 003423 712 ASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKANQLWRLRDLCSLIWWILHQDLHNMKLYKHFLCS 791 (821)
Q Consensus 712 ~~~~~~vW~~~~~~~l~~i~cgg~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 791 (821)
.++.+.+|++.+.+++....|-.-..+--..-..+..++..|.|+-.+++.++. +...+.+.| .....
T Consensus 772 ~~g~i~~~s~p~l~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~~~~~--------~~~~~~~~~----~~~~~ 839 (902)
T 2oaj_A 772 INGHLRVFTIPDFKEQMSEHIPFPIAAKYITESSVLRNGDIAIRVSEFQASLFS--------TVKEQDTLA----PVSDT 839 (902)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSCCCHHHHTTCEECTTSCEEEECSSSEEEEEE--------EESCCCCCC----CCCCB
T ss_pred CCCcEEEEECcchHHHhhccCCcccccccccceEEcCCCCEEEEeChhheEEEE--------EEcCCCCCC----CCCce
Confidence 999999999999999999988443211100000112244466666666555444 334444444 22368
Q ss_pred hhheeeeecCCCcc
Q 003423 792 LFNILMILCPFPYE 805 (821)
Q Consensus 792 ~~~~~~~~~~~~~~ 805 (821)
|||--+++-|=|..
T Consensus 840 l~~~~~~~p~rp~~ 853 (902)
T 2oaj_A 840 LYINGIRIPYRPQV 853 (902)
T ss_dssp CCCTTCCCCCCCCC
T ss_pred eeCCCCCCCCCCCc
Confidence 89988877665543
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-40 Score=393.89 Aligned_cols=571 Identities=9% Similarity=0.030 Sum_probs=360.9
Q ss_pred cCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEE
Q 003423 129 PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVW 208 (821)
Q Consensus 129 ~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vw 208 (821)
.+|.+.|++++|+| ++++||+|+.||+|+|||..+.+....+. +...+.+++|. + +.+|++++.|+.|++|
T Consensus 14 ~gh~~~V~~lafsp---dg~~lAsgs~Dg~I~lw~~~~~~~~~~~~--~~~~V~~l~fs---p-g~~L~S~s~D~~v~lW 84 (902)
T 2oaj_A 14 YGMSSKPIAAAFDF---TQNLLAIATVTGEVHIYGQQQVEVVIKLE--DRSAIKEMRFV---K-GIYLVVINAKDTVYVL 84 (902)
T ss_dssp EECSSCEEEEEEET---TTTEEEEEETTSEEEEECSTTCEEEEECS--SCCCEEEEEEE---T-TTEEEEEETTCEEEEE
T ss_pred cCCCCCcEEEEECC---CCCEEEEEeCCCEEEEEeCCCcEEEEEcC--CCCCEEEEEEc---C-CCEEEEEECcCeEEEE
Confidence 48999999999999 99999999999999999998877665543 34457788874 4 5699999999999999
Q ss_pred EcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccC
Q 003423 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (821)
Q Consensus 209 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~ 288 (821)
|+. ..+.+..+. |.+.|++++|+|++++|++|+.||+|++||+.++
T Consensus 85 d~~---------------------------------~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~ 130 (902)
T 2oaj_A 85 SLY---------------------------------SQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRD 130 (902)
T ss_dssp ETT---------------------------------TCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTT
T ss_pred ECC---------------------------------CCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 998 455666665 7789999999999999999999999999999876
Q ss_pred cccCCCCceeeec------eEEeccceeEEEEEEcC---CEEEEEeCCCeEEEEcC-CCceeeEeecc------------
Q 003423 289 YWKDSDSIEEVGS------SVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGS-DGKQLKMIKEH------------ 346 (821)
Q Consensus 289 ~~~~~~~~~~~~~------~~~~~h~~~i~~v~~~~---~~l~s~~~dg~i~iwd~-~~~~~~~~~~h------------ 346 (821)
.. .....+ ....+|..+|++++|++ ..+++++.||++ +||+ .++++..+..|
T Consensus 131 ~~-----~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~ 204 (902)
T 2oaj_A 131 QL-----SSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSE 204 (902)
T ss_dssp EE-----EEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCC
T ss_pred cc-----ccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccccc
Confidence 53 110000 13467999999999996 589999999999 9999 67777777665
Q ss_pred ------cCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC-cCCC--cc---cCC----------------ccccccC---
Q 003423 347 ------IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPG--SL---ESH----------------PEAKEFN--- 395 (821)
Q Consensus 347 ------~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~-~~~~--~~---~~~----------------~~~~~~~--- 395 (821)
.. .|++++|+|++++|++|+.||.|++||++. +++. ++ ..+ ...+.+.
T Consensus 205 ~~~~~h~~-~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~ 283 (902)
T 2oaj_A 205 KTNEKRTP-KVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCEN 283 (902)
T ss_dssp CTTSCBCC-CEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECS
T ss_pred ccccccCC-CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecC
Confidence 34 599999999999999999999999999954 3222 12 111 1112221
Q ss_pred -CC-cceEEee-cCCc--ccce-----------------------------eccC-CCCcceEEEEeecC----------
Q 003423 396 -GR-TEIFSIK-IPNF--SEQI-----------------------------RLTD-SKSEYVRCLHLTSE---------- 430 (821)
Q Consensus 396 -~~-~~~~~~~-~~~~--~~~~-----------------------------~~~~-~~~~~i~~l~f~~~---------- 430 (821)
++ ..++... .... ...+ ..+. .+...+..+.+.++
T Consensus 284 ~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d 363 (902)
T 2oaj_A 284 NPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHN 363 (902)
T ss_dssp STTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBS
T ss_pred CCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCC
Confidence 11 1111111 1100 0000 0111 23455667776541
Q ss_pred C-eEEEEecCCcEEEEEecCCCccee----eEeeeccCCcceEEEecc---------------------CCCC-----CC
Q 003423 431 D-TLYIATNHGYLYHTKLCDMDSVNW----NKILQVSEGMPIICMDLL---------------------SNEP-----KY 479 (821)
Q Consensus 431 ~-~~l~~~~~g~~~~~~i~~~~~~~~----~~~~~~~~~~~i~~~~~~---------------------~~~~-----~~ 479 (821)
. .+++.+.+|.+..+++.+...... ...... +...+.++.+. .++. ..
T Consensus 364 ~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~-~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~ 442 (902)
T 2oaj_A 364 PGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSW-LRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKL 442 (902)
T ss_dssp CSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTT-BTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCC
T ss_pred ceeEEEEcCCCcEEEEECCCCCcccccccCCCcccc-cCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccc
Confidence 2 456667778887665532110000 000001 12344444431 1110 01
Q ss_pred CCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeec----cCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCC
Q 003423 480 PCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWS----AGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDP 555 (821)
Q Consensus 480 s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 555 (821)
.+++++++++|+.||+|++||+.++.......+..... ..+...+. ..+++|++++||+|+.||+|+||++...
T Consensus 443 ~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~--svafspdg~~LAsgs~DgtV~lwd~~~~ 520 (902)
T 2oaj_A 443 PAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVD--KISFAAETLELAVSIETGDVVLFKYEVN 520 (902)
T ss_dssp CCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEE--EEEEETTTTEEEEEETTSCEEEEEEEEC
T ss_pred ccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCcee--EEEecCCCCeEEEEecCcEEEEEEecCc
Confidence 13578899999999999999998774322122222110 01111222 2467899999999999999999999865
Q ss_pred CCcc--------c---------c--------------cCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcE
Q 003423 556 FSSV--------C---------Y--------------ESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNL 604 (821)
Q Consensus 556 ~~~~--------~---------~--------------~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i 604 (821)
.... . . ...-...+++...+ ..|...|++++||||| +||+|+.||+|
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l-~~h~~~V~svafSpdG-~lAsgs~D~tv 598 (902)
T 2oaj_A 521 QFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAV-HANKGKTSAINNSNIG-FVGIAYAAGSL 598 (902)
T ss_dssp CC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEE-CCCSCSEEEEEECBTS-EEEEEETTSEE
T ss_pred cccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEE-EcCCCcEEEEEecCCc-EEEEEeCCCcE
Confidence 2100 0 0 00001123455665 6799999999999999 99999999999
Q ss_pred EEEecCcccccccccccccccCcccccccccCCcceEEEEEE-----ecCCCceEEEEecCCCeEEEEEe---ecCCcee
Q 003423 605 VLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVA-----KLRSNQTEIRSTGGDGCICYLEY---DKDRESL 676 (821)
Q Consensus 605 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~-----~~~~~~~~l~t~g~Dg~i~iw~~---~~~~~~~ 676 (821)
+|||+..... .....+..+...| ...|++|+|. |...++.+|++++.||+|++|++ .......
T Consensus 599 ~lwd~~~~~~--------~~~~~~~~~~~gh-~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~ 669 (902)
T 2oaj_A 599 MLIDRRGPAI--------IYMENIREISGAQ-SACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDV 669 (902)
T ss_dssp EEEETTTTEE--------EEEEEGGGTCSSC-CCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEE
T ss_pred EEEECCCCeE--------EEEeehhHhcccc-ccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEE
Confidence 9999864210 0000112221134 5679999999 52222589999999999999999 3333333
Q ss_pred eeeeeeeeeeeeeeee---eccC-CCc------------cC--CCCCeEEEeeecccEEEEECccccEEEEEeeCCCCcc
Q 003423 677 EFIGMKQVKELSLIQS---VSAE-NNS------------ID--LASCNYAAGFASTDFIIWNLITEAKVVQIPCGGWRRP 738 (821)
Q Consensus 677 ~~~~~~~~~~~~~~~~---~~~~-~~~------------~~--~~~~~l~~g~~~~~~~vW~~~~~~~l~~i~cgg~~r~ 738 (821)
.+.++...+.-..+.. ++.+ +.. .. .++..|+++ +.+++||+..+++.+... -+...+.
T Consensus 670 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~-~~~~~~~ 746 (902)
T 2oaj_A 670 QLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKG-FKYPLAA 746 (902)
T ss_dssp EEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEE-CSSCEEE
T ss_pred EecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeE-cccceee
Confidence 4445433211111111 1111 000 00 122234444 778999999998776655 3333333
Q ss_pred cee--ec-----CCCCCcceeEEEEeeceEEEEcc
Q 003423 739 HSY--FL-----GDVPEIKNCFAYVKANQLWRLRD 766 (821)
Q Consensus 739 ~~~--~~-----~~~~~~~~~~~~~~~~~l~~~~~ 766 (821)
++. +. ...+.+.......+++.+.+|+-
T Consensus 747 ~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~ 781 (902)
T 2oaj_A 747 TGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTI 781 (902)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEET
T ss_pred eEEEEEEeccccccccCceEEEEEeCCCcEEEEEC
Confidence 443 11 01233455667778889999883
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3e-38 Score=375.36 Aligned_cols=462 Identities=14% Similarity=0.205 Sum_probs=340.2
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
|.++|++++|+ |+ +.+|++|. +|.|+|||+.+++.+.++..+.. +|.++.|+|++ ..+++++
T Consensus 12 h~~~v~~i~~s--p~----~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~----------~~l~~~~ 74 (814)
T 3mkq_A 12 RSDRVKGIDFH--PT----EPWVLTTLYSGRVEIWNYETQVEVRSIQVTET-PVRAGKFIARK----------NWIIVGS 74 (814)
T ss_dssp ECSCEEEEEEC--SS----SSEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEEEGGG----------TEEEEEE
T ss_pred CCCceEEEEEC--CC----CCEEEEEeCCCEEEEEECCCCceEEEEecCCC-cEEEEEEeCCC----------CEEEEEe
Confidence 78899999999 99 67777766 89999999999999999987655 79999999764 2455566
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCC-ceeEEE
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-SIILEV 173 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~-~~~~~~ 173 (821)
.++.|++|++..+ +....+.+|.+.|++++|+| ++++|++|+.||.|++||+.++ .....+
T Consensus 75 ~dg~i~vw~~~~~---------------~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 136 (814)
T 3mkq_A 75 DDFRIRVFNYNTG---------------EKVVDFEAHPDYIRSIAVHP---TKPYVLSGSDDLTVKLWNWENNWALEQTF 136 (814)
T ss_dssp TTSEEEEEETTTC---------------CEEEEEECCSSCEEEEEECS---SSSEEEEEETTSEEEEEEGGGTSEEEEEE
T ss_pred CCCeEEEEECCCC---------------cEEEEEecCCCCEEEEEEeC---CCCEEEEEcCCCEEEEEECCCCceEEEEE
Confidence 7899999998743 46778889999999999999 9999999999999999999987 445555
Q ss_pred ccCcceeEEEEeeccCCc-cCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE
Q 003423 174 HSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (821)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (821)
..+. ..+.++.| +| ++..+++++.||.|++||+. .......+
T Consensus 137 ~~~~-~~v~~~~~---~p~~~~~l~~~~~dg~v~vwd~~---------------------------------~~~~~~~~ 179 (814)
T 3mkq_A 137 EGHE-HFVMCVAF---NPKDPSTFASGCLDRTVKVWSLG---------------------------------QSTPNFTL 179 (814)
T ss_dssp ECCS-SCEEEEEE---ETTEEEEEEEEETTSEEEEEETT---------------------------------CSSCSEEE
T ss_pred cCCC-CcEEEEEE---EcCCCCEEEEEeCCCeEEEEECC---------------------------------CCcceeEE
Confidence 5443 34666766 35 78899999999999999997 33334444
Q ss_pred ec-CCCcEEEEEEcC--CCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCC
Q 003423 253 VG-HEGSIFRIEWSS--CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED 327 (821)
Q Consensus 253 ~~-h~~~I~~l~~s~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~d 327 (821)
.. |...|.+++|+| ++++|++++.||.|++||+.++.. . ..+.+|...|.+++|+ +.++++++.|
T Consensus 180 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-----~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d 249 (814)
T 3mkq_A 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC-----V-----ATLEGHMSNVSFAVFHPTLPIIISGSED 249 (814)
T ss_dssp ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE-----E-----EEEECCSSCEEEEEECSSSSEEEEEETT
T ss_pred ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE-----E-----EEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 44 448999999999 999999999999999999988654 3 5778899999999999 4789999999
Q ss_pred CeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCE-EEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeec
Q 003423 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSL-LVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKI 405 (821)
Q Consensus 328 g~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~-l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (821)
|.|++||+ .++.+..+..|.. .+++++|+|++.. +++.+.++.+.+|++...
T Consensus 250 g~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 303 (814)
T 3mkq_A 250 GTLKIWNSSTYKVEKTLNVGLE-RSWCIATHPTGRKNYIASGFDNGFTVLSLGND------------------------- 303 (814)
T ss_dssp SCEEEEETTTCSEEEEECCSSS-SEEEEEECTTCGGGEEEEEETTEEEEEECSCC-------------------------
T ss_pred CeEEEEECCCCcEEEEeecCCC-cEEEEEEccCCCceEEEEEeCCCEEEEEcCCC-------------------------
Confidence 99999999 6788888988887 6999999999863 244445677889987431
Q ss_pred CCcccceeccCCCCcceEEEEeecCCeEEEEecCCc----EEEEEec---CCCcc---eeeEeeeccCCcceEEEeccCC
Q 003423 406 PNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGY----LYHTKLC---DMDSV---NWNKILQVSEGMPIICMDLLSN 475 (821)
Q Consensus 406 ~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~----~~~~~i~---~~~~~---~~~~~~~~~~~~~i~~~~~~~~ 475 (821)
...++++|++.+++...... ++...+. ..... .............+.++.+.
T Consensus 304 ----------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-- 365 (814)
T 3mkq_A 304 ----------------EPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHS-- 365 (814)
T ss_dssp ----------------SCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEEC--
T ss_pred ----------------CceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEEC--
Confidence 12344566666665532211 1111111 00000 00000011123334455554
Q ss_pred CCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCC
Q 003423 476 EPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDP 555 (821)
Q Consensus 476 ~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 555 (821)
|++.++++++ +|.+.+|++..... .. ...+ ...+++|+++++++++.+|.|++|+..
T Consensus 366 ------pdg~~la~~~-~~~~~i~~~~~~~~------~~------~~~i--~~~~~spdg~~la~~~~~g~v~l~~~~-- 422 (814)
T 3mkq_A 366 ------PNGRFVTVVG-DGEYVIYTALAWRN------KA------FGKC--QDFVWGPDSNSYALIDETGQIKYYKNF-- 422 (814)
T ss_dssp ------TTSSEEEEEE-TTEEEEEETTTTEE------EE------EEEC--SEEEECTTSSCEEEECTTCCEEEEETT--
T ss_pred ------CCCCEEEEec-CCEEEEEECccccc------cC------CCce--EEEEEeCCCCeEEEEeCCCcEEEEECC--
Confidence 3568888888 89999999653211 00 0111 124577889999999999999999522
Q ss_pred CCcccccCCccceeeeeEEEecccCceEEEEEeecCC---CEEEEEcCCCcEEEEecCcccccccccccccccCcccccc
Q 003423 556 FSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFED---EVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFK 632 (821)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~---~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (821)
.+|...|.+++|+|++ ++|++++.||.|++||+.. ...+..+.
T Consensus 423 ---------------------~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~-------------~~~~~~~~ 468 (814)
T 3mkq_A 423 ---------------------KEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDN-------------GTLVRRID 468 (814)
T ss_dssp ---------------------EECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTT-------------CCEEEEES
T ss_pred ---------------------CCccceEEcCCcCccceecceEEEEecCCEEEEEECCc-------------CcEEEEEe
Confidence 3456678899999998 6899999999999999873 23334442
Q ss_pred cccCCcceEEEEEEecCCCceEEEEe------cCCCeEEEEE
Q 003423 633 GAHGISTVSTLSVAKLRSNQTEIRST------GGDGCICYLE 668 (821)
Q Consensus 633 ~~h~~~~Vt~i~~~~~~~~~~~l~t~------g~Dg~i~iw~ 668 (821)
.|. ..+.|. +++.+|+++ +.|+.+.+|.
T Consensus 469 -~~~----~~v~~s---~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 469 -VNA----KDVIWS---DNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp -SCE----EEEEEC---TTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred -cCC----CEEEEc---CCCCEEEEEEcCcccCCceEEEEEe
Confidence 331 278888 567889998 7777776664
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.3e-36 Score=361.17 Aligned_cols=471 Identities=12% Similarity=0.151 Sum_probs=336.4
Q ss_pred eeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcE
Q 003423 56 LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV 135 (821)
Q Consensus 56 ~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 135 (821)
..+.+..+.. +|.+++|+|++ ..++++..++.|++|++..+ +....+.+|...|
T Consensus 5 ~~~~~~~h~~-~v~~i~~sp~~----------~~la~~~~~g~v~iwd~~~~---------------~~~~~~~~~~~~v 58 (814)
T 3mkq_A 5 IKKTFSNRSD-RVKGIDFHPTE----------PWVLTTLYSGRVEIWNYETQ---------------VEVRSIQVTETPV 58 (814)
T ss_dssp CEEEEEEECS-CEEEEEECSSS----------SEEEEEETTSEEEEEETTTT---------------EEEEEEECCSSCE
T ss_pred cceeeecCCC-ceEEEEECCCC----------CEEEEEeCCCEEEEEECCCC---------------ceEEEEecCCCcE
Confidence 4556666555 79999999764 24555566899999998643 5677888999999
Q ss_pred EEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCc
Q 003423 136 FDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHV 215 (821)
Q Consensus 136 ~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~ 215 (821)
++++|+| ++++|++|+.||.|++||+.+++.+..+..+.. .+.++.| ++++.+|++|+.||.|++||+.
T Consensus 59 ~~~~~s~---~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~v~~~~~---s~~~~~l~~~~~dg~i~vw~~~---- 127 (814)
T 3mkq_A 59 RAGKFIA---RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD-YIRSIAV---HPTKPYVLSGSDDLTVKLWNWE---- 127 (814)
T ss_dssp EEEEEEG---GGTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEE---CSSSSEEEEEETTSEEEEEEGG----
T ss_pred EEEEEeC---CCCEEEEEeCCCeEEEEECCCCcEEEEEecCCC-CEEEEEE---eCCCCEEEEEcCCCEEEEEECC----
Confidence 9999999 999999999999999999999999888876654 4667777 6789999999999999999998
Q ss_pred ccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecccCcccCCC
Q 003423 216 APLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSD 294 (821)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 294 (821)
........+.+|...|.+++|+| +++.|++++.||+|++||+..+..
T Consensus 128 ----------------------------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~---- 175 (814)
T 3mkq_A 128 ----------------------------NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---- 175 (814)
T ss_dssp ----------------------------GTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC----
T ss_pred ----------------------------CCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc----
Confidence 12356677889999999999999 889999999999999999987654
Q ss_pred CceeeeceEEe-ccceeEEEEEEc----CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeC
Q 003423 295 SIEEVGSSVLY-GHNARVWDCCLT----DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF 368 (821)
Q Consensus 295 ~~~~~~~~~~~-~h~~~i~~v~~~----~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~ 368 (821)
. ..+. .|...+.+++|+ +.++++++.||.|++||+ .++.+..+.+|.. .|.+++|+|++++|++++.
T Consensus 176 -~-----~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~ 248 (814)
T 3mkq_A 176 -N-----FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSE 248 (814)
T ss_dssp -S-----EEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEET
T ss_pred -e-----eEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEeC
Confidence 2 2333 444889999996 479999999999999999 7888889999988 6999999999999999999
Q ss_pred CCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCe--EEEEecCCcEEEEE
Q 003423 369 DSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT--LYIATNHGYLYHTK 446 (821)
Q Consensus 369 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~--~l~~~~~g~~~~~~ 446 (821)
||.|++||+.... .......+...+.+++|+|++. +++++.++.+..++
T Consensus 249 dg~v~vwd~~~~~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (814)
T 3mkq_A 249 DGTLKIWNSSTYK-----------------------------VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLS 299 (814)
T ss_dssp TSCEEEEETTTCS-----------------------------EEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEE
T ss_pred CCeEEEEECCCCc-----------------------------EEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEE
Confidence 9999999985421 0111223346799999999985 56666666666554
Q ss_pred ecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCcc---EEE------EEecCCCCCCcceeEEeec
Q 003423 447 LCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGN---MTI------VRVVGDVHTPQLSFTFTWS 517 (821)
Q Consensus 447 i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~---i~i------~~~~~~~~~~~~~~~~~~~ 517 (821)
+..... .. .+. +++..+++++.+.. +.. |++..............
T Consensus 300 ~~~~~~--------------~~--~~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 353 (814)
T 3mkq_A 300 LGNDEP--------------TL--SLD--------PVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELG-- 353 (814)
T ss_dssp CSCCSC--------------CE--EEC--------SSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEEC--
T ss_pred cCCCCc--------------ee--EEC--------CCCCEEEECcccccceeeeeeecccccccccCccceeeeecCC--
Confidence 432211 11 111 23455555544331 111 11111111111000110
Q ss_pred cCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEE
Q 003423 518 AGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFC 597 (821)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~s 597 (821)
..... ....+++|+++++++++ +|.+.+|++... ...+...|++++|+|++++|++
T Consensus 354 -~~~~~--~~~~~~spdg~~la~~~-~~~~~i~~~~~~--------------------~~~~~~~i~~~~~spdg~~la~ 409 (814)
T 3mkq_A 354 -SVDVF--PQSLAHSPNGRFVTVVG-DGEYVIYTALAW--------------------RNKAFGKCQDFVWGPDSNSYAL 409 (814)
T ss_dssp -CCSSC--CSEEEECTTSSEEEEEE-TTEEEEEETTTT--------------------EEEEEEECSEEEECTTSSCEEE
T ss_pred -CCccC--CceeEECCCCCEEEEec-CCEEEEEECccc--------------------cccCCCceEEEEEeCCCCeEEE
Confidence 00011 12245788999999887 899999997643 1223456889999999999999
Q ss_pred EcCCCcEEEEecCcccccccccccccccCcccccccccCCcceEEEEEEecCCCc---eEEEEecCCCeEEEEEeecCCc
Q 003423 598 GDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQ---TEIRSTGGDGCICYLEYDKDRE 674 (821)
Q Consensus 598 gs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~---~~l~t~g~Dg~i~iw~~~~~~~ 674 (821)
++.+|.|++|+... .| ...|.++.|.| ++ ..|++++.||.|++|++.....
T Consensus 410 ~~~~g~v~l~~~~~----------------------~~-~~~v~~~~~s~---dg~~~~~l~~~~~d~~v~~~d~~~~~~ 463 (814)
T 3mkq_A 410 IDETGQIKYYKNFK----------------------EV-TSWSVPMHSAI---DRLFSGALLGVKSDGFVYFFDWDNGTL 463 (814)
T ss_dssp ECTTCCEEEEETTE----------------------EC-TTCCCCCSSCC---CEEECSSSEEEEETTEEEEECTTTCCE
T ss_pred EeCCCcEEEEECCC----------------------Cc-cceEEcCCcCc---cceecceEEEEecCCEEEEEECCcCcE
Confidence 99999999996331 12 22455555553 33 4789999999999999965432
Q ss_pred eeeeeeeeeeeeeeeeeeeccCCCccCCCCCeEEEe------eecccEEEEE
Q 003423 675 SLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAG------FASTDFIIWN 720 (821)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g------~~~~~~~vW~ 720 (821)
...+..... ...+.++++.++++ ..+..+++|.
T Consensus 464 ~~~~~~~~~-------------~v~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 464 VRRIDVNAK-------------DVIWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp EEEESSCEE-------------EEEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred EEEEecCCC-------------EEEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 211111100 12234557778888 6666666765
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.3e-37 Score=332.70 Aligned_cols=279 Identities=19% Similarity=0.355 Sum_probs=246.3
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
|.++|++++|+ |+ +.+|++|. |+.|+|||+.+++.+..++.|.. .|.+++|++++ ..+++++
T Consensus 107 h~~~V~~~~~~--p~----~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~-~V~~v~~~~~~----------~~l~sgs 169 (410)
T 1vyh_C 107 HRSPVTRVIFH--PV----FSVMVSASEDATIKVWDYETGDFERTLKGHTD-SVQDISFDHSG----------KLLASCS 169 (410)
T ss_dssp CSSCEEEEEEC--SS----SSEEEEEESSSCEEEEETTTCCCCEEECCCSS-CEEEEEECTTS----------SEEEEEE
T ss_pred cCCcEEEEEEc--CC----CCEEEEEeCCCeEEEEECCCCcEEEEEeccCC-cEEEEEEcCCC----------CEEEEEe
Confidence 78899999999 98 56777765 89999999999999999988665 79999999653 2556666
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEc
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 174 (821)
.|+.|++||+.. .+.+..+.+|.+.|.+++|+| ++++|++|+.|++|++||+.++..+..+.
T Consensus 170 ~D~~i~iwd~~~---------------~~~~~~~~~h~~~V~~v~~~p---~~~~l~s~s~D~~i~~wd~~~~~~~~~~~ 231 (410)
T 1vyh_C 170 ADMTIKLWDFQG---------------FECIRTMHGHDHNVSSVSIMP---NGDHIVSASRDKTIKMWEVQTGYCVKTFT 231 (410)
T ss_dssp TTSCCCEEETTS---------------SCEEECCCCCSSCEEEEEECS---SSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCCeEEEEeCCC---------------CceeEEEcCCCCCEEEEEEeC---CCCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 799999999863 356788899999999999999 99999999999999999999999998888
Q ss_pred cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEec
Q 003423 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (821)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (821)
.+... +.++.+ ++++.++++|+.||.|++||+. .......+.+
T Consensus 232 ~h~~~-v~~~~~---~~~g~~l~s~s~D~~v~vwd~~---------------------------------~~~~~~~~~~ 274 (410)
T 1vyh_C 232 GHREW-VRMVRP---NQDGTLIASCSNDQTVRVWVVA---------------------------------TKECKAELRE 274 (410)
T ss_dssp CCSSC-EEEEEE---CTTSSEEEEEETTSCEEEEETT---------------------------------TCCEEEEECC
T ss_pred CCCcc-EEEEEE---CCCCCEEEEEcCCCeEEEEECC---------------------------------CCceeeEecC
Confidence 76653 455555 5789999999999999999998 5667778899
Q ss_pred CCCcEEEEEEcCC--------------------CCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEE
Q 003423 255 HEGSIFRIEWSSC--------------------GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC 314 (821)
Q Consensus 255 h~~~I~~l~~s~~--------------------~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v 314 (821)
|...|.+++|+|+ +.+|++|+.|++|++||+.++.. . ..+.+|...|.++
T Consensus 275 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~-----~-----~~~~~h~~~v~~v 344 (410)
T 1vyh_C 275 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC-----L-----MTLVGHDNWVRGV 344 (410)
T ss_dssp CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE-----E-----EEEECCSSCEEEE
T ss_pred CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCce-----E-----EEEECCCCcEEEE
Confidence 9999999999996 67899999999999999998754 3 5788999999999
Q ss_pred EEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 315 CLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 315 ~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
+|+ +.+|++++.|++|++||+ .++++..+.+|.. .|++++|+|++.+|++|+.||.|++|++
T Consensus 345 ~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 345 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH-FVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS-CEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC-cEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 998 579999999999999999 7788999999998 6999999999999999999999999986
No 14
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.5e-36 Score=325.58 Aligned_cols=203 Identities=19% Similarity=0.296 Sum_probs=183.4
Q ss_pred eeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCE
Q 003423 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE 204 (821)
Q Consensus 125 ~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~ 204 (821)
...+.+|.++|++++|+| ++.+|++|+.|++|++||+.+++....+.+|... +.+++| ++++.+|++|+.||.
T Consensus 101 ~~~l~gh~~~V~~~~~~p---~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~-V~~v~~---~~~~~~l~sgs~D~~ 173 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHP---VFSVMVSASEDATIKVWDYETGDFERTLKGHTDS-VQDISF---DHSGKLLASCSADMT 173 (410)
T ss_dssp SCEEECCSSCEEEEEECS---SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSC-EEEEEE---CTTSSEEEEEETTSC
T ss_pred eEeecccCCcEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCc-EEEEEE---cCCCCEEEEEeCCCe
Confidence 456789999999999999 9999999999999999999999998888877654 667777 578899999999999
Q ss_pred EEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 003423 205 IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (821)
Q Consensus 205 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd 284 (821)
|++||+. ....+..+.+|...|.+++|+|++++|++|+.|++|++||
T Consensus 174 i~iwd~~---------------------------------~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd 220 (410)
T 1vyh_C 174 IKLWDFQ---------------------------------GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220 (410)
T ss_dssp CCEEETT---------------------------------SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred EEEEeCC---------------------------------CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 9999998 5667788899999999999999999999999999999999
Q ss_pred cccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecC--
Q 003423 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL-- 359 (821)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~-- 359 (821)
+.++.. . ..+.+|...|.++.++ +.++++++.|++|++||+ .+++...+.+|.. .|.+++|+|+
T Consensus 221 ~~~~~~-----~-----~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~ 289 (410)
T 1vyh_C 221 VQTGYC-----V-----KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH-VVECISWAPESS 289 (410)
T ss_dssp TTTCCE-----E-----EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECCSCG
T ss_pred CCCCcE-----E-----EEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCc-eEEEEEEcCccc
Confidence 998765 3 5788999999999998 579999999999999999 7788888999988 6999999986
Q ss_pred ------------------CCEEEEEeCCCcEEEEEcC
Q 003423 360 ------------------SSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 360 ------------------~~~l~tg~~dg~I~iwd~~ 378 (821)
+.+|++|+.|+.|++||+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~ 326 (410)
T 1vyh_C 290 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326 (410)
T ss_dssp GGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred ccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence 6689999999999999984
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.4e-35 Score=312.43 Aligned_cols=283 Identities=16% Similarity=0.244 Sum_probs=240.3
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
|.++|++++|+ || +++|++|+ |+.|+|||..+++.+..+..+.. .|.+++|+|++ ..+++++
T Consensus 54 H~~~v~~~~~s--~d----~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~-~v~~~~~s~~~----------~~l~s~~ 116 (340)
T 1got_B 54 HLAKIYAMHWG--TD----SRLLLSASQDGKLIIWDSYTTNKVHAIPLRSS-WVMTCAYAPSG----------NYVACGG 116 (340)
T ss_dssp CSSCEEEEEEC--TT----SSEEEEEETTTEEEEEETTTCCEEEEEECSSS-CEEEEEECTTS----------SEEEEEE
T ss_pred CCCceEEEEEC--CC----CCEEEEEeCCCcEEEEECCCCCcceEeecCCc-cEEEEEECCCC----------CEEEEEe
Confidence 78999999999 98 66777765 89999999999999998887555 79999999763 2455556
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEc
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 174 (821)
.|+.+++|++.... ........+.+|.+.|.++.|+| ++. +++++.|++|++||+.+++.+..+.
T Consensus 117 ~d~~v~iw~~~~~~-----------~~~~~~~~~~~h~~~v~~~~~~~---~~~-l~s~s~d~~i~~wd~~~~~~~~~~~ 181 (340)
T 1got_B 117 LDNICSIYNLKTRE-----------GNVRVSRELAGHTGYLSCCRFLD---DNQ-IVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp TTCEEEEEETTTCS-----------BSCEEEEEEECCSSCEEEEEEEE---TTE-EEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CCCeEEEEECccCC-----------CcceeEEEecCCCccEEEEEECC---CCc-EEEEECCCcEEEEECCCCcEEEEEc
Confidence 68999999987432 01345677889999999999998 665 8899999999999999999988888
Q ss_pred cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEec
Q 003423 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (821)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (821)
.|.. .+.++.+ ++++.++++|+.||.|++||+. .......+.+
T Consensus 182 ~h~~-~v~~~~~---~~~~~~l~sg~~d~~v~~wd~~---------------------------------~~~~~~~~~~ 224 (340)
T 1got_B 182 GHTG-DVMSLSL---APDTRLFVSGACDASAKLWDVR---------------------------------EGMCRQTFTG 224 (340)
T ss_dssp CCSS-CEEEEEE---CTTSSEEEEEETTSCEEEEETT---------------------------------TCSEEEEECC
T ss_pred CCCC-ceEEEEE---CCCCCEEEEEeCCCcEEEEECC---------------------------------CCeeEEEEcC
Confidence 7665 4667777 5788999999999999999998 5667788899
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEE
Q 003423 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRV 332 (821)
Q Consensus 255 h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~i 332 (821)
|...|.+++|+|++++|++|+.|++|++||++..+. ... .....+...|.+++|+ +.+|++++.|+.|++
T Consensus 225 h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~-----~~~---~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~v 296 (340)
T 1got_B 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQE-----LMT---YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----EEE---ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE-----EEE---EccCCcccceEEEEECCCCCEEEEECCCCeEEE
Confidence 999999999999999999999999999999988654 210 0112234579999998 589999999999999
Q ss_pred EcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 003423 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (821)
Q Consensus 333 wd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd 376 (821)
||+ .++.+..+.+|.+ .|.+++|+|++.+|++|+.||.|++||
T Consensus 297 wd~~~~~~~~~~~~h~~-~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 297 WDALKADRAGVLAGHDN-RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EETTTCCEEEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEcccCcEeeEeecCCC-cEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 998 7888899999998 699999999999999999999999996
No 16
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.1e-35 Score=307.82 Aligned_cols=293 Identities=13% Similarity=0.159 Sum_probs=235.9
Q ss_pred cceeeeccCCCCcEEEEEEeecC-CCCCEEEEEECCCcEEEEEccCCcee--EEEccCcceeEEEEeeccCCccCeEEEE
Q 003423 122 LSLVQSLPRLSHWVFDVCFLKVC-NGNRSLAIGCSDNSIRVWDISNSSII--LEVHSPERCLLYSMKLWGDNLEALRIAS 198 (821)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~-~~~~~l~t~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~s~~~~~~s~~~~~l~s 198 (821)
....+.+.+|.++|++++|+|.. .++.+|+||+.|++|++||+.++... ..+.+|.. .+.++.+ ++++.++++
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~-~v~~~~~---~~~~~~l~s 97 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQL-GVVSVDI---SHTLPIAAS 97 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEE---CSSSSEEEE
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCC-CEEEEEE---CCCCCEEEE
Confidence 34556778999999999999821 24679999999999999999877643 34555554 3567776 578889999
Q ss_pred EeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCC
Q 003423 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278 (821)
Q Consensus 199 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg 278 (821)
|+.|+.|++||+. ..+.+..+.+|...+.+++|+|++++|++++.|+
T Consensus 98 ~s~D~~i~lWd~~---------------------------------~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg 144 (321)
T 3ow8_A 98 SSLDAHIRLWDLE---------------------------------NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVG 144 (321)
T ss_dssp EETTSEEEEEETT---------------------------------TTEEEEEEECCTTCCCCEEECTTSSEEEEECTTS
T ss_pred EeCCCcEEEEECC---------------------------------CCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCC
Confidence 9999999999998 6677888889999999999999999999999999
Q ss_pred eEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEE
Q 003423 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCL 355 (821)
Q Consensus 279 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~ 355 (821)
.|++||+.+++. . ..+..|...|.+++|+ +++|++++.|+.|++||+ +++.+..+.+|.. .|.+++
T Consensus 145 ~v~i~~~~~~~~-----~-----~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~ 213 (321)
T 3ow8_A 145 KVNIFGVESGKK-----E-----YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAM-PIRSLT 213 (321)
T ss_dssp EEEEEETTTCSE-----E-----EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-CCCEEE
T ss_pred cEEEEEcCCCce-----e-----EEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCC-ceeEEE
Confidence 999999988754 2 4677888999999998 589999999999999999 7888899999988 699999
Q ss_pred EecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEE
Q 003423 356 YDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI 435 (821)
Q Consensus 356 ~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~ 435 (821)
|+|++++|++|+.|+.|++||++.. .. .
T Consensus 214 ~spd~~~l~s~s~dg~i~iwd~~~~---------------------------------------------------~~-~ 241 (321)
T 3ow8_A 214 FSPDSQLLVTASDDGYIKIYDVQHA---------------------------------------------------NL-A 241 (321)
T ss_dssp ECTTSCEEEEECTTSCEEEEETTTC---------------------------------------------------CE-E
T ss_pred EcCCCCEEEEEcCCCeEEEEECCCc---------------------------------------------------ce-e
Confidence 9999999999999999999998431 00 0
Q ss_pred EecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEe
Q 003423 436 ATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFT 515 (821)
Q Consensus 436 ~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~ 515 (821)
.+ + ..+ ... +..+
T Consensus 242 ~~---------~------------~~h-~~~--------------------------------------------v~~~- 254 (321)
T 3ow8_A 242 GT---------L------------SGH-ASW--------------------------------------------VLNV- 254 (321)
T ss_dssp EE---------E------------CCC-SSC--------------------------------------------EEEE-
T ss_pred EE---------E------------cCC-CCc--------------------------------------------eEEE-
Confidence 00 0 000 000 1112
Q ss_pred eccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEE
Q 003423 516 WSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVL 595 (821)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L 595 (821)
+++|++++|++++.||.|++||+... +++..+ ..|...|.+++|+|++++|
T Consensus 255 --------------~~sp~~~~l~s~s~D~~v~iwd~~~~--------------~~~~~~-~~h~~~v~~v~~s~~g~~l 305 (321)
T 3ow8_A 255 --------------AFCPDDTHFVSSSSDKSVKVWDVGTR--------------TCVHTF-FDHQDQVWGVKYNGNGSKI 305 (321)
T ss_dssp --------------EECTTSSEEEEEETTSCEEEEETTTT--------------EEEEEE-CCCSSCEEEEEECTTSSEE
T ss_pred --------------EECCCCCEEEEEeCCCcEEEEeCCCC--------------EEEEEE-cCCCCcEEEEEECCCCCEE
Confidence 23344578888889999999998776 666666 6889999999999999999
Q ss_pred EEEcCCCcEEEEecC
Q 003423 596 FCGDLRGNLVLFPLL 610 (821)
Q Consensus 596 ~sgs~dG~i~iw~~~ 610 (821)
++|+.||.|++||+.
T Consensus 306 ~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 306 VSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEETTCCEEEEECC
T ss_pred EEEeCCCeEEEEeCC
Confidence 999999999999964
No 17
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.8e-35 Score=310.25 Aligned_cols=293 Identities=13% Similarity=0.215 Sum_probs=238.7
Q ss_pred cceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEee
Q 003423 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (821)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (821)
.+....+.+|.+.|++++|+| ++++|++|+.||+|++||+.+++.+..+..+.. .+.+++| ++++.+|++|+.
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~---d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~-~v~~~~~---s~~~~~l~s~~~ 117 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGT---DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSS-WVMTCAY---APSGNYVACGGL 117 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECT---TSSEEEEEETTTEEEEEETTTCCEEEEEECSSS-CEEEEEE---CTTSSEEEEEET
T ss_pred chhheeecCCCCceEEEEECC---CCCEEEEEeCCCcEEEEECCCCCcceEeecCCc-cEEEEEE---CCCCCEEEEEeC
Confidence 566788999999999999999 999999999999999999999998888876654 3566776 678999999999
Q ss_pred CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 003423 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (821)
Q Consensus 202 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~ 281 (821)
|+.|++|++.... ........+.+|.+.|.++.|++++ .+++++.|++|+
T Consensus 118 d~~v~iw~~~~~~-----------------------------~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~ 167 (340)
T 1got_B 118 DNICSIYNLKTRE-----------------------------GNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCA 167 (340)
T ss_dssp TCEEEEEETTTCS-----------------------------BSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEE
T ss_pred CCeEEEEECccCC-----------------------------CcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEE
Confidence 9999999987210 1234566788999999999999876 489999999999
Q ss_pred EEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEec
Q 003423 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDS 358 (821)
Q Consensus 282 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~ 358 (821)
+||+.+++. . ..+.+|...|++++|+ +.++++++.|++|++||+ +++++..+.+|.. .|.+++|+|
T Consensus 168 ~wd~~~~~~-----~-----~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p 236 (340)
T 1got_B 168 LWDIETGQQ-----T-----TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES-DINAICFFP 236 (340)
T ss_dssp EEETTTTEE-----E-----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS-CEEEEEECT
T ss_pred EEECCCCcE-----E-----EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcC-CEEEEEEcC
Confidence 999988754 3 5778999999999998 479999999999999999 7888899999988 699999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEec
Q 003423 359 LSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN 438 (821)
Q Consensus 359 ~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~ 438 (821)
++++|++|+.||.|++||++.. ..+..
T Consensus 237 ~~~~l~s~s~d~~v~iwd~~~~---------------------------------------------------~~~~~-- 263 (340)
T 1got_B 237 NGNAFATGSDDATCRLFDLRAD---------------------------------------------------QELMT-- 263 (340)
T ss_dssp TSSEEEEEETTSCEEEEETTTT---------------------------------------------------EEEEE--
T ss_pred CCCEEEEEcCCCcEEEEECCCC---------------------------------------------------cEEEE--
Confidence 9999999999999999998531 00000
Q ss_pred CCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeecc
Q 003423 439 HGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSA 518 (821)
Q Consensus 439 ~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~ 518 (821)
+.. .. .... +..+
T Consensus 264 --------~~~-~~----------~~~~--------------------------------------------v~~~---- 276 (340)
T 1got_B 264 --------YSH-DN----------IICG--------------------------------------------ITSV---- 276 (340)
T ss_dssp --------ECC-TT----------CCSC--------------------------------------------EEEE----
T ss_pred --------Ecc-CC----------cccc--------------------------------------------eEEE----
Confidence 000 00 0000 0111
Q ss_pred CccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEE
Q 003423 519 GIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCG 598 (821)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sg 598 (821)
+++|++++|++++.||.|++||+... .....+ .+|...|++++|+|++++|++|
T Consensus 277 -----------~~s~~g~~l~~g~~d~~i~vwd~~~~--------------~~~~~~-~~h~~~v~~~~~s~dg~~l~s~ 330 (340)
T 1got_B 277 -----------SFSKSGRLLLAGYDDFNCNVWDALKA--------------DRAGVL-AGHDNRVSCLGVTDDGMAVATG 330 (340)
T ss_dssp -----------EECTTSSEEEEEETTSEEEEEETTTC--------------CEEEEE-ECCSSCEEEEEECTTSSCEEEE
T ss_pred -----------EECCCCCEEEEECCCCeEEEEEcccC--------------cEeeEe-ecCCCcEEEEEEcCCCCEEEEE
Confidence 23455688888999999999988765 344455 6899999999999999999999
Q ss_pred cCCCcEEEEe
Q 003423 599 DLRGNLVLFP 608 (821)
Q Consensus 599 s~dG~i~iw~ 608 (821)
+.||.|+|||
T Consensus 331 s~D~~i~iWd 340 (340)
T 1got_B 331 SWDSFLKIWN 340 (340)
T ss_dssp ETTSCEEEEC
T ss_pred cCCccEEecC
Confidence 9999999996
No 18
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.5e-36 Score=311.20 Aligned_cols=284 Identities=17% Similarity=0.277 Sum_probs=240.6
Q ss_pred eeeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeee--eEEEeeccccEEeEEeccccCCCCCCccceeeEE
Q 003423 15 QYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLI--RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (821)
Q Consensus 15 ~~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~--~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l 91 (821)
.|.++|++++|+ |+.-..+.+|++|+ |+.|+|||+.+++.. ..+..+.. .|.++.++++. ..++
T Consensus 30 ~H~~~V~~v~~~--~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~-~v~~~~~~~~~----------~~l~ 96 (321)
T 3ow8_A 30 AHDDAIWSVAWG--TNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQL-GVVSVDISHTL----------PIAA 96 (321)
T ss_dssp SSSSCEEEEEEC---------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECSSS----------SEEE
T ss_pred cCCCcEEEEEEe--cCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCC-CEEEEEECCCC----------CEEE
Confidence 388999999999 64101245777766 999999999887643 34555444 79999998653 2455
Q ss_pred EEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeE
Q 003423 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL 171 (821)
Q Consensus 92 ~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~ 171 (821)
.++.|+.|++||+..+ +.+..+..|...+.+++|+| ++++|++|+.|+.|++||+.+++...
T Consensus 97 s~s~D~~i~lWd~~~~---------------~~~~~~~~~~~~~~~~~~sp---dg~~l~~g~~dg~v~i~~~~~~~~~~ 158 (321)
T 3ow8_A 97 SSSLDAHIRLWDLENG---------------KQIKSIDAGPVDAWTLAFSP---DSQYLATGTHVGKVNIFGVESGKKEY 158 (321)
T ss_dssp EEETTSEEEEEETTTT---------------EEEEEEECCTTCCCCEEECT---TSSEEEEECTTSEEEEEETTTCSEEE
T ss_pred EEeCCCcEEEEECCCC---------------CEEEEEeCCCccEEEEEECC---CCCEEEEEcCCCcEEEEEcCCCceeE
Confidence 5566999999998743 46677888999999999999 99999999999999999999998888
Q ss_pred EEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEE
Q 003423 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (821)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (821)
.+..+.. .+.++++ +|++.+|++|+.||.|++||+. ..+.+..
T Consensus 159 ~~~~~~~-~v~~~~~---spdg~~lasg~~dg~i~iwd~~---------------------------------~~~~~~~ 201 (321)
T 3ow8_A 159 SLDTRGK-FILSIAY---SPDGKYLASGAIDGIINIFDIA---------------------------------TGKLLHT 201 (321)
T ss_dssp EEECSSS-CEEEEEE---CTTSSEEEEEETTSCEEEEETT---------------------------------TTEEEEE
T ss_pred EecCCCc-eEEEEEE---CCCCCEEEEEcCCCeEEEEECC---------------------------------CCcEEEE
Confidence 7776544 4566776 6899999999999999999998 6677888
Q ss_pred EecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCe
Q 003423 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCT 329 (821)
Q Consensus 252 ~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~ 329 (821)
+.+|...|.+++|+|++++|++++.|++|++||+++... . ..+.+|...|.+++|+ +.+|++++.|++
T Consensus 202 ~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~-----~-----~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~ 271 (321)
T 3ow8_A 202 LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL-----A-----GTLSGHASWVLNVAFCPDDTHFVSSSSDKS 271 (321)
T ss_dssp ECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCE-----E-----EEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcce-----e-----EEEcCCCCceEEEEECCCCCEEEEEeCCCc
Confidence 999999999999999999999999999999999988654 2 5788999999999998 479999999999
Q ss_pred EEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 330 CRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 330 i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
|++||+ +++++.++.+|.. .|++++|+|++++|++++.||.|++||.
T Consensus 272 v~iwd~~~~~~~~~~~~h~~-~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 272 VKVWDVGTRTCVHTFFDHQD-QVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEEeCCCCEEEEEEcCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 999999 7889999999988 6999999999999999999999999996
No 19
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=310.99 Aligned_cols=294 Identities=15% Similarity=0.166 Sum_probs=226.6
Q ss_pred CCcceeeccce---eeeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCC------------CeeeeEEEeeccccEE
Q 003423 5 DLSEWRLDVGQ---YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEA------------GTLIRPFQVFHGIRLH 69 (821)
Q Consensus 5 ~i~~w~~~~~~---~~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t------------~~~~~~~~~~~~~~i~ 69 (821)
..+.|++.... +...|++++|+ || +++|+++++..+++||... +.....++ ....|.
T Consensus 15 ~~r~w~~~~~~~~~~~~~v~~~~fs--~d----G~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~ 86 (344)
T 4gqb_B 15 AAREWNLPPNAPACMERQLEAARYR--SD----GALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQ--TEAGVA 86 (344)
T ss_dssp --------CCSCSSCCSEEEEEEEC--TT----SCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEE--ESSCEE
T ss_pred cccccCCCCCCcccccCCEEEEEEC--CC----CCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeec--cCCCEE
Confidence 35678876544 66789999999 99 7899988888888887321 11111111 223699
Q ss_pred eEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCE
Q 003423 70 GISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRS 149 (821)
Q Consensus 70 ~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~ 149 (821)
+++|+++ ..++++..|+.|+|||+..+.. .......+.+|.+.|++++|+| ++++
T Consensus 87 ~~~~s~d-----------~~l~~~s~dg~v~lWd~~~~~~-----------~~~~~~~~~~H~~~V~~v~~sp---dg~~ 141 (344)
T 4gqb_B 87 DLTWVGE-----------RGILVASDSGAVELWELDENET-----------LIVSKFCKYEHDDIVSTVSVLS---SGTQ 141 (344)
T ss_dssp EEEEETT-----------TEEEEEETTSEEEEEEECTTSS-----------CEEEEEEEECCSSCEEEEEECT---TSSE
T ss_pred EEEEeCC-----------CeEEEEECCCEEEEEeccCCCc-----------eeEeeccccCCCCCEEEEEECC---CCCE
Confidence 9999965 2577778899999999986531 0123345668999999999999 9999
Q ss_pred EEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccC-eEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccC
Q 003423 150 LAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEA-LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAH 228 (821)
Q Consensus 150 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 228 (821)
|++|+.|++|++||+.+++.+..+.+|... +.++.| ++++ .++++|+.||.|++||++
T Consensus 142 l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~-V~~~~~---~~~~~~~l~s~s~D~~v~iwd~~----------------- 200 (344)
T 4gqb_B 142 AVSGSKDICIKVWDLAQQVVLSSYRAHAAQ-VTCVAA---SPHKDSVFLSCSEDNRILLWDTR----------------- 200 (344)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSC-EEEEEE---CSSCTTEEEEEETTSCEEEEETT-----------------
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEcCcCCc-eEEEEe---cCCCCCceeeecccccccccccc-----------------
Confidence 999999999999999999999999877654 567777 3454 588999999999999998
Q ss_pred CCCCCcceeeecccccceeeEEEE--ecCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEe
Q 003423 229 GSSSDFKCFKLQDQQHTAVNLFRL--VGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (821)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~I~~l~~s~~-~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 305 (821)
..+....+ ..|...+.+++|+|+ +++|++|+.||+|++||+++++. + ..+.
T Consensus 201 ----------------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~-----~-----~~~~ 254 (344)
T 4gqb_B 201 ----------------CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC-----V-----LSSA 254 (344)
T ss_dssp ----------------SSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C-----C-----EEEE
T ss_pred ----------------ccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE-----E-----EEEc
Confidence 33444443 356678999999995 56889999999999999998765 4 5888
Q ss_pred ccceeEEEEEEcC---CEEEEEeCCCeEEEEcCCCceeeEeecccCCCeEEEEEecCCC-EEEEEeCCCcEEEEEcCC
Q 003423 306 GHNARVWDCCLTD---SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 306 ~h~~~i~~v~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~-~l~tg~~dg~I~iwd~~~ 379 (821)
+|...|++++|++ .+|++++.|++|++||+....+..+.+|.+ .|++++|+|+++ +|++++.||+|++|++..
T Consensus 255 ~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~-~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 255 VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRD-FVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSS-CEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCC-CEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 9999999999983 579999999999999996555667889998 699999999885 678999999999999965
No 20
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7.4e-35 Score=308.44 Aligned_cols=296 Identities=16% Similarity=0.241 Sum_probs=238.2
Q ss_pred cceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEee
Q 003423 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (821)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (821)
.+....+.+|.+.|++++|+| ++++||||+.|++|++||..+++....+..+.. .+.+++| +|++.++++|+.
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~---d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~-~v~~~~~---sp~g~~lasg~~ 126 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCK---DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCT-WVMACAY---APSGCAIACGGL 126 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTCCEEEEEECSSS-CCCEEEE---CTTSSEEEEEST
T ss_pred cEEEEEecCCCCeEEEEEECC---CCCEEEEEeCCCeEEEEECCCCCcceEEecCCC-CEEEEEE---CCCCCEEEEeeC
Confidence 456788999999999999999 999999999999999999999888877776544 3456666 689999999999
Q ss_pred CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 003423 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (821)
Q Consensus 202 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~ 281 (821)
|+.+++|++...... ........+.+|.+.|.+++|+|+++.|++++.|++|+
T Consensus 127 d~~i~v~~~~~~~~~---------------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~ 179 (354)
T 2pbi_B 127 DNKCSVYPLTFDKNE---------------------------NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCA 179 (354)
T ss_dssp TSEEEEEECCCCTTC---------------------------CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred CCCEEEEEEeccccc---------------------------cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEE
Confidence 999999998721100 01233456678999999999999999999999999999
Q ss_pred EEecccCcccCCCCceeeeceEEeccceeEEEEEEc----CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEE
Q 003423 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT----DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLY 356 (821)
Q Consensus 282 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~----~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~ 356 (821)
+||+.+++. . ..+.+|...|.++.+. +++|++++.||+|++||+ .++++..+.+|.. .|.+++|
T Consensus 180 lwd~~~~~~-----~-----~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~~ 248 (354)
T 2pbi_B 180 LWDVESGQL-----L-----QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES-DVNSVRY 248 (354)
T ss_dssp EEETTTCCE-----E-----EEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEE
T ss_pred EEeCCCCeE-----E-----EEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC-CeEEEEE
Confidence 999998765 3 5788999999999996 369999999999999999 7888999999988 6999999
Q ss_pred ecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEE
Q 003423 357 DSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA 436 (821)
Q Consensus 357 ~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~ 436 (821)
+|++++|++|+.|+.|++||++.. ..+.
T Consensus 249 ~p~~~~l~s~s~D~~v~lwd~~~~---------------------------------------------------~~~~- 276 (354)
T 2pbi_B 249 YPSGDAFASGSDDATCRLYDLRAD---------------------------------------------------REVA- 276 (354)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTT---------------------------------------------------EEEE-
T ss_pred eCCCCEEEEEeCCCeEEEEECCCC---------------------------------------------------cEEE-
Confidence 999999999999999999998431 0000
Q ss_pred ecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEee
Q 003423 437 TNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTW 516 (821)
Q Consensus 437 ~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~ 516 (821)
.+.... .... +..+
T Consensus 277 ----------~~~~~~----------~~~~--------------------------------------------~~~~-- 290 (354)
T 2pbi_B 277 ----------IYSKES----------IIFG--------------------------------------------ASSV-- 290 (354)
T ss_dssp ----------EECCTT----------CCSC--------------------------------------------EEEE--
T ss_pred ----------EEcCCC----------cccc--------------------------------------------eeEE--
Confidence 000000 0000 0011
Q ss_pred ccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEE
Q 003423 517 SAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLF 596 (821)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~ 596 (821)
++++++++|++++.|+.|++||+..+ .....+ .+|...|++++|+|++++|+
T Consensus 291 -------------~~s~~g~~l~~g~~d~~i~vwd~~~~--------------~~~~~l-~~h~~~v~~l~~spdg~~l~ 342 (354)
T 2pbi_B 291 -------------DFSLSGRLLFAGYNDYTINVWDVLKG--------------SRVSIL-FGHENRVSTLRVSPDGTAFC 342 (354)
T ss_dssp -------------EECTTSSEEEEEETTSCEEEEETTTC--------------SEEEEE-CCCSSCEEEEEECTTSSCEE
T ss_pred -------------EEeCCCCEEEEEECCCcEEEEECCCC--------------ceEEEE-ECCCCcEEEEEECCCCCEEE
Confidence 23455688889999999999998765 334444 68999999999999999999
Q ss_pred EEcCCCcEEEEe
Q 003423 597 CGDLRGNLVLFP 608 (821)
Q Consensus 597 sgs~dG~i~iw~ 608 (821)
+|+.||+|++|+
T Consensus 343 sgs~D~~v~vW~ 354 (354)
T 2pbi_B 343 SGSWDHTLRVWA 354 (354)
T ss_dssp EEETTSEEEEEC
T ss_pred EEcCCCCEEecC
Confidence 999999999995
No 21
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.1e-35 Score=310.38 Aligned_cols=286 Identities=12% Similarity=0.219 Sum_probs=239.3
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
|.++|++++|+ |+ +++|++|+ |+.|+|||..+++....+..+.. .|.++.|+|++ ..+++++
T Consensus 63 H~~~V~~~~~s--~d----~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~-~v~~~~~sp~g----------~~lasg~ 125 (354)
T 2pbi_B 63 HGNKVLCMDWC--KD----KRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCT-WVMACAYAPSG----------CAIACGG 125 (354)
T ss_dssp CSSCEEEEEEC--TT----SSEEEEEETTSEEEEEETTTCCEEEEEECSSS-CCCEEEECTTS----------SEEEEES
T ss_pred CCCeEEEEEEC--CC----CCEEEEEeCCCeEEEEECCCCCcceEEecCCC-CEEEEEECCCC----------CEEEEee
Confidence 88899999999 98 56777765 89999999999998888886554 69999999764 2344444
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEc
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 174 (821)
.|+.+++|++....... .......+.+|.+.|.+++|+| ++..|++|+.|++|++||+.+++.+..+.
T Consensus 126 ~d~~i~v~~~~~~~~~~---------~~~~~~~~~~h~~~v~~~~~~~---~~~~l~t~s~D~~v~lwd~~~~~~~~~~~ 193 (354)
T 2pbi_B 126 LDNKCSVYPLTFDKNEN---------MAAKKKSVAMHTNYLSACSFTN---SDMQILTASGDGTCALWDVESGQLLQSFH 193 (354)
T ss_dssp TTSEEEEEECCCCTTCC---------SGGGCEEEEECSSCEEEEEECS---SSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCCCEEEEEEecccccc---------ccccceeeeccCCcEEEEEEeC---CCCEEEEEeCCCcEEEEeCCCCeEEEEEc
Confidence 58999999987543111 1234566778999999999999 99999999999999999999999999888
Q ss_pred cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEec
Q 003423 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (821)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (821)
.|... +.++.+.+ ++++.++++|+.||.|++||+. ..+.+..+.+
T Consensus 194 ~h~~~-v~~~~~~~-~~~g~~l~sgs~Dg~v~~wd~~---------------------------------~~~~~~~~~~ 238 (354)
T 2pbi_B 194 GHGAD-VLCLDLAP-SETGNTFVSGGCDKKAMVWDMR---------------------------------SGQCVQAFET 238 (354)
T ss_dssp CCSSC-EEEEEECC-CSSCCEEEEEETTSCEEEEETT---------------------------------TCCEEEEECC
T ss_pred CCCCC-eEEEEEEe-CCCCCEEEEEeCCCeEEEEECC---------------------------------CCcEEEEecC
Confidence 77654 45555532 2467899999999999999998 6677888899
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEe--ccceeEEEEEEc--CCEEEEEeCCCeE
Q 003423 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY--GHNARVWDCCLT--DSFIITAGEDCTC 330 (821)
Q Consensus 255 h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~h~~~i~~v~~~--~~~l~s~~~dg~i 330 (821)
|...|.+++|+|++++|++|+.|++|++||++.... . ..+. .+...+.+++|+ +.+|++++.|++|
T Consensus 239 h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~-----~-----~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i 308 (354)
T 2pbi_B 239 HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE-----V-----AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTI 308 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----E-----EEECCTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-----E-----EEEcCCCcccceeEEEEeCCCCEEEEEECCCcE
Confidence 999999999999999999999999999999987644 2 1222 234578899998 5899999999999
Q ss_pred EEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 003423 331 RVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (821)
Q Consensus 331 ~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd 376 (821)
++||+ +++.+..+.+|.+ .|++++|+|++++|++|+.||.|++|+
T Consensus 309 ~vwd~~~~~~~~~l~~h~~-~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 309 NVWDVLKGSRVSILFGHEN-RVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEETTTCSEEEEECCCSS-CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEECCCCceEEEEECCCC-cEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999 7888999999998 699999999999999999999999995
No 22
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=303.61 Aligned_cols=211 Identities=21% Similarity=0.332 Sum_probs=180.8
Q ss_pred cceeeeccCCCC-cEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeE--EEccCcceeEEEEeeccCCccCeEEEE
Q 003423 122 LSLVQSLPRLSH-WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL--EVHSPERCLLYSMKLWGDNLEALRIAS 198 (821)
Q Consensus 122 ~~~~~~~~~h~~-~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~s~~~~~~s~~~~~l~s 198 (821)
++.+..+++|.+ .|++++|+| ++++||+|+.|++|+|||+.++.... .+...+...+.+++| +|++.+|++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp---~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~---sp~g~~l~s 78 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNP---AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAW---SPCGNYLAS 78 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECT---TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEE---CTTSSEEEE
T ss_pred EEEeeeecCCCCCcEEEEEECC---CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEE---CCCCCEEEE
Confidence 567888999988 999999999 99999999999999999999886432 233334456778887 688999999
Q ss_pred EeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCC
Q 003423 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278 (821)
Q Consensus 199 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg 278 (821)
|+.|+.|++|+... .....+..+.+|.+.|.+++|+|++++|++|+.|+
T Consensus 79 ~s~D~~v~iw~~~~-------------------------------~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~ 127 (345)
T 3fm0_A 79 ASFDATTCIWKKNQ-------------------------------DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK 127 (345)
T ss_dssp EETTSCEEEEEECC-------------------------------C-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EECCCcEEEEEccC-------------------------------CCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCC
Confidence 99999999999871 13356778899999999999999999999999999
Q ss_pred eEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCc--eeeEeecccCCCeEE
Q 003423 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGK--QLKMIKEHIGRGIWR 353 (821)
Q Consensus 279 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~--~~~~~~~h~~~~i~~ 353 (821)
+|++||+..... ...+ ..+.+|...|.+++|+ +.+|++++.|++|++|+. .++ +..++.+|.. .|++
T Consensus 128 ~v~iwd~~~~~~-----~~~~--~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~-~v~~ 199 (345)
T 3fm0_A 128 SVWVWEVDEEDE-----YECV--SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHES-TVWS 199 (345)
T ss_dssp CEEEEEECTTSC-----EEEE--EEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEE
T ss_pred eEEEEECCCCCC-----eEEE--EEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCC-ceEE
Confidence 999999987643 3333 4678899999999998 479999999999999998 443 4567889988 6999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEc
Q 003423 354 CLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 354 l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
++|+|++++|++|+.|+.|++|+.
T Consensus 200 l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 200 LAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEE
T ss_pred EEECCCCCEEEEEeCCCeEEEecc
Confidence 999999999999999999999996
No 23
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.6e-34 Score=299.16 Aligned_cols=279 Identities=17% Similarity=0.300 Sum_probs=232.0
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
|.++|++++|+ |+ +.+|++|. |+.|++||+++++.+..++.+.. +|.++.|++++ ..+++++
T Consensus 12 h~~~V~~~~fs--p~----~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~-~v~~~~~~~~~----------~~l~s~s 74 (304)
T 2ynn_A 12 RSDRVKGIDFH--PT----EPWVLTTLYSGRVELWNYETQVEVRSIQVTET-PVRAGKFIARK----------NWIIVGS 74 (304)
T ss_dssp ECSCEEEEEEC--SS----SSEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEEEGGG----------TEEEEEE
T ss_pred CCCceEEEEEC--CC----CCEEEEEcCCCcEEEEECCCCceeEEeeccCC-cEEEEEEeCCC----------CEEEEEC
Confidence 78899999999 99 66777665 89999999999999999987655 79999999763 2566667
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCcee-EEE
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII-LEV 173 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~-~~~ 173 (821)
.|+.|++||+..+ +.+..+.+|.+.|++++|+| ++++|++|+.|++|++||+.++..+ ..+
T Consensus 75 ~d~~i~vwd~~~~---------------~~~~~~~~h~~~v~~~~~~~---~~~~l~sgs~D~~v~lWd~~~~~~~~~~~ 136 (304)
T 2ynn_A 75 DDFRIRVFNYNTG---------------EKVVDFEAHPDYIRSIAVHP---TKPYVLSGSDDLTVKLWNWENNWALEQTF 136 (304)
T ss_dssp TTSEEEEEETTTC---------------CEEEEEECCSSCEEEEEECS---SSSEEEEEETTSCEEEEEGGGTTEEEEEE
T ss_pred CCCEEEEEECCCC---------------cEEEEEeCCCCcEEEEEEcC---CCCEEEEECCCCeEEEEECCCCcchhhhh
Confidence 7999999998743 46778899999999999999 9999999999999999999987554 445
Q ss_pred ccCcceeEEEEeeccCCc-cCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceee-EEE
Q 003423 174 HSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN-LFR 251 (821)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 251 (821)
..|. ..+.+++| +| ++.++++|+.||.|++||+. .... ...
T Consensus 137 ~~h~-~~v~~v~~---~p~~~~~l~sgs~D~~v~iwd~~---------------------------------~~~~~~~~ 179 (304)
T 2ynn_A 137 EGHE-HFVMCVAF---NPKDPSTFASGCLDRTVKVWSLG---------------------------------QSTPNFTL 179 (304)
T ss_dssp CCCC-SCEEEEEE---CTTCTTEEEEEETTSEEEEEETT---------------------------------CSSCSEEE
T ss_pred cccC-CcEEEEEE---CCCCCCEEEEEeCCCeEEEEECC---------------------------------CCCcccee
Confidence 5544 45677777 44 57899999999999999997 2222 223
Q ss_pred EecCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC--CEEEEEeCC
Q 003423 252 LVGHEGSIFRIEWSS--CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGED 327 (821)
Q Consensus 252 ~~~h~~~I~~l~~s~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~~l~s~~~d 327 (821)
..+|...|..+.|+| ++++|++++.|++|++||+++++. . ..+.+|...|.+++|++ .+|++++.|
T Consensus 180 ~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~-----~-----~~~~~h~~~v~~~~~~p~~~~l~s~s~D 249 (304)
T 2ynn_A 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC-----V-----ATLEGHMSNVSFAVFHPTLPIIISGSED 249 (304)
T ss_dssp ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE-----E-----EEEECCSSCEEEEEECSSSSEEEEEETT
T ss_pred ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc-----c-----eeeCCCCCCEEEEEECCCCCEEEEEcCC
Confidence 346778999999987 678999999999999999998754 3 58889999999999994 789999999
Q ss_pred CeEEEEcC-CCceeeEeecccCCCeEEEEEecCCC--EEEEEeCCCcEEEEEcC
Q 003423 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS--LLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 328 g~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~--~l~tg~~dg~I~iwd~~ 378 (821)
|+|++||. +++.+.++..|.. .+++++++|++. ++++|+.|| +.+|++.
T Consensus 250 g~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~ 301 (304)
T 2ynn_A 250 GTLKIWNSSTYKVEKTLNVGLE-RSWCIATHPTGRKNYIASGFDNG-FTVLSLG 301 (304)
T ss_dssp SCEEEEETTTCCEEEEECCSSS-SEEEEEECTTCGGGCEEEEETTE-EEEEECC
T ss_pred CeEEEEECCCCceeeeccCCCc-cEEEEEECCCCCceEEEEecCCc-eEEEEec
Confidence 99999999 7888999998887 699999999875 577777655 7788774
No 24
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.5e-35 Score=317.45 Aligned_cols=301 Identities=16% Similarity=0.252 Sum_probs=241.0
Q ss_pred Ccceeeccce-------eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEecccc
Q 003423 6 LSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFIN 77 (821)
Q Consensus 6 i~~w~~~~~~-------~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~ 77 (821)
+..|+..+.. |.++|++++|+ |+ +.+|++|+ |+.|+|||+.+++.+..++.+.. .|.+++|+|++
T Consensus 48 ~~~~~~~~~~~~~~l~gH~~~V~~~~~s--p~----~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~-~v~~~~~s~~g 120 (380)
T 3iz6_a 48 AVSFNPTDLVCCRTLQGHSGKVYSLDWT--PE----KNWIVSASQDGRLIVWNALTSQKTHAIKLHCP-WVMECAFAPNG 120 (380)
T ss_dssp CCCCCCCCCEEEEEECCCSSCEEEEEEC--TT----SSCEEEEETTSEEEEEETTTTEEEEEEECCCT-TCCCCEECTTS
T ss_pred ccccccceeEEeecccccccEEEEEEEc--CC----CCEEEEEeCCCeEEEEECCCCccceEEecCCC-CEEEEEECCCC
Confidence 4456554432 78999999999 98 56777765 89999999999999999987665 69999999663
Q ss_pred CCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCC-CCEEEEEECC
Q 003423 78 CTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG-NRSLAIGCSD 156 (821)
Q Consensus 78 ~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~-~~~l~t~~~d 156 (821)
..+++++.|+.+++|++........ .......+.+|.+.|.+++|+| + +..|++|+.|
T Consensus 121 ----------~~las~~~d~~v~iw~~~~~~~~~~--------~~~~~~~~~gh~~~v~~~~~~~---~~~~~l~s~s~D 179 (380)
T 3iz6_a 121 ----------QSVACGGLDSACSIFNLSSQADRDG--------NMPVSRVLTGHKGYASSCQYVP---DQETRLITGSGD 179 (380)
T ss_dssp ----------SEEEECCSSSCCEEEECCCCSSCCC--------SSTTCCBCCCCSSCCCCCBCCS---SSSSCEEEECTT
T ss_pred ----------CEEEEeeCCCcEEEEECCCCccccC--------CccceeeccCCCcceEEEEEec---CCCCEEEEECCC
Confidence 2344445589999999975421111 1334567889999999999998 5 5679999999
Q ss_pred CcEEEEEccCCceeEEEc----cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCC
Q 003423 157 NSIRVWDISNSSIILEVH----SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (821)
Q Consensus 157 ~~i~iwd~~~~~~~~~~~----~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 232 (821)
++|++||+.+++.+..+. ..+...+.++.+. +.++.++++|+.||.|++||++
T Consensus 180 ~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~l~sgs~D~~v~~wd~~--------------------- 236 (380)
T 3iz6_a 180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN--SLNANMFISGSCDTTVRLWDLR--------------------- 236 (380)
T ss_dssp SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC--SSSCCEEEEEETTSCEEEEETT---------------------
T ss_pred CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee--cCCCCEEEEEECCCeEEEEECC---------------------
Confidence 999999999999887763 2233446666663 3478899999999999999987
Q ss_pred CcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEec------
Q 003423 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG------ 306 (821)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~------ 306 (821)
.....+..+.+|.+.|.+++|+|++++|+||+.|++|++||++++.. .. .+..
T Consensus 237 -----------~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~-----~~-----~~~~~~~~~~ 295 (380)
T 3iz6_a 237 -----------ITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ-----LQ-----VYNREPDRND 295 (380)
T ss_dssp -----------TTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEE-----EE-----EECCCCSSSC
T ss_pred -----------CCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcE-----EE-----Eecccccccc
Confidence 13355677889999999999999999999999999999999998755 22 2222
Q ss_pred -cceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEe----ecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 307 -HNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMI----KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 307 -h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~----~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
+...|++++|+ +.++++++.||.|++||. .++.+..+ .+|.+ .|++++|+|++++|++|+.||.|++|++.
T Consensus 296 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~-~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 296 NELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG-RISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp CSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCC-CCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred cccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCC-ceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 22348899998 589999999999999998 66766666 57877 69999999999999999999999999986
Q ss_pred C
Q 003423 379 A 379 (821)
Q Consensus 379 ~ 379 (821)
+
T Consensus 375 ~ 375 (380)
T 3iz6_a 375 G 375 (380)
T ss_dssp S
T ss_pred C
Confidence 4
No 25
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7.9e-35 Score=308.44 Aligned_cols=297 Identities=14% Similarity=0.145 Sum_probs=222.4
Q ss_pred CCCCcceeeccce---eeeeeEEEEEeccCCCCCCcceEEeec-------CCeEEEEECCCCeeee----EEEeeccccE
Q 003423 3 KKDLSEWRLDVGQ---YLGEISALCFVHLPSHLSSLPFLLAGS-------GSQVLLYDLEAGTLIR----PFQVFHGIRL 68 (821)
Q Consensus 3 ~~~i~~w~~~~~~---~~~~Vt~l~~~~~p~~~~~~~~l~~g~-------~~~i~iwd~~t~~~~~----~~~~~~~~~i 68 (821)
+.....|++.... |...|++++|+ || +++|++|+ |+.|++|+..++.... ....++ ..|
T Consensus 25 ~~~~~~w~~p~~~p~~H~~~V~~v~fS--pD----G~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~-~~V 97 (357)
T 4g56_B 25 SSKGSAWGRPVTAPACMEVQIGAVRYR--RD----GALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTE-AGV 97 (357)
T ss_dssp ---------------CCCSEEEEEEEC--SS----SCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECS-SCE
T ss_pred CccccccCCCCCCcccccCCEEEEEEC--CC----CCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCC-CCE
Confidence 4556788876544 88899999999 99 77888876 5789999988776432 223333 369
Q ss_pred EeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCC
Q 003423 69 HGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR 148 (821)
Q Consensus 69 ~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~ 148 (821)
.+++|+|+. .+++++.++.|+|||+..+... ........+|.+.|++++|+| +++
T Consensus 98 ~~~~~s~d~-----------~~l~~s~dg~v~lWd~~~~~~~-----------~~~~~~~~~h~~~V~~v~~sp---dg~ 152 (357)
T 4g56_B 98 TDVAWVSEK-----------GILVASDSGAVELWEILEKESL-----------LVNKFAKYEHDDIVKTLSVFS---DGT 152 (357)
T ss_dssp EEEEEETTT-----------EEEEEETTSCEEEC-------------------CCCCEEECCCSSCEEEEEECS---SSS
T ss_pred EEEEEcCCC-----------CEEEEECCCEEEEeecccccee-----------EEEeeccCCCCCCEEEEEECC---CCC
Confidence 999999663 5788888999999999865311 112234568999999999999 999
Q ss_pred EEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccC-eEEEEEeeCCEEEEEEcccCCcccCCCCCCCccc
Q 003423 149 SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEA-LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHA 227 (821)
Q Consensus 149 ~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 227 (821)
+|++|+.|+.|++||+.+++.+..+..+.. .+.+++| ++++ .++++++.||.|++||++.
T Consensus 153 ~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~-~v~~v~~---s~~~~~~~~s~~~dg~v~~wd~~~--------------- 213 (357)
T 4g56_B 153 QAVSGGKDFSVKVWDLSQKAVLKSYNAHSS-EVNCVAA---CPGKDTIFLSCGEDGRILLWDTRK--------------- 213 (357)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEE---CTTCSSCEEEEETTSCEEECCTTS---------------
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEcCCCC-CEEEEEE---ccCCCceeeeeccCCceEEEECCC---------------
Confidence 999999999999999999999998887655 4667777 3444 5789999999999999982
Q ss_pred CCCCCCcceeeecccccceeeE--EEEecCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEecccCcccCCCCceeeeceEE
Q 003423 228 HGSSSDFKCFKLQDQQHTAVNL--FRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (821)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~I~~l~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 304 (821)
.++. ..+..|...|.+++|+|++ .+|++|+.|+.|++||+++++. . ..+
T Consensus 214 ------------------~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~-----~-----~~~ 265 (357)
T 4g56_B 214 ------------------PKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS-----A-----QTS 265 (357)
T ss_dssp ------------------SSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG-----C-----EEE
T ss_pred ------------------CceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE-----e-----EEE
Confidence 2222 2234677889999999975 6899999999999999998765 3 578
Q ss_pred eccceeEEEEEEcC---CEEEEEeCCCeEEEEcCCCceeeEeecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEEcCC
Q 003423 305 YGHNARVWDCCLTD---SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDS-LSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 305 ~~h~~~i~~v~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~-~~~~l~tg~~dg~I~iwd~~~ 379 (821)
.+|...|++++|++ .+|++++.|++|++||++...+....+|.+ .|++++|+| ++++|++++.||.|++|++..
T Consensus 266 ~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~-~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 266 AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRD-FVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSS-CEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCC-CEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 89999999999983 579999999999999995434444557888 699999998 789999999999999999954
No 26
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3e-34 Score=308.85 Aligned_cols=289 Identities=18% Similarity=0.353 Sum_probs=234.7
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeecc-----------------ccEEeEEeccccC
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHG-----------------IRLHGISCNFINC 78 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~-----------------~~i~~i~~~~~~~ 78 (821)
|.++|++++|+ || +++|++|.++.++||++.+++.+..+..+.. ..|.+++|+|++
T Consensus 63 h~~~V~~v~fs--pd----g~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg- 135 (393)
T 1erj_A 63 HTSVVCCVKFS--ND----GEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG- 135 (393)
T ss_dssp CSSCCCEEEEC--TT----SSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS-
T ss_pred CCCEEEEEEEC--CC----CCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCC-
Confidence 78899999999 99 7899999999999999999998887764321 138899999663
Q ss_pred CCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCc
Q 003423 79 TEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNS 158 (821)
Q Consensus 79 ~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~ 158 (821)
..++++..|+.|++||+... +....+.+|...|++++|+| ++++|++|+.|++
T Consensus 136 ---------~~l~s~~~d~~i~iwd~~~~---------------~~~~~~~~h~~~v~~~~~~p---~~~~l~s~s~d~~ 188 (393)
T 1erj_A 136 ---------KFLATGAEDRLIRIWDIENR---------------KIVMILQGHEQDIYSLDYFP---SGDKLVSGSGDRT 188 (393)
T ss_dssp ---------SEEEEEETTSCEEEEETTTT---------------EEEEEECCCSSCEEEEEECT---TSSEEEEEETTSE
T ss_pred ---------CEEEEEcCCCeEEEEECCCC---------------cEEEEEccCCCCEEEEEEcC---CCCEEEEecCCCc
Confidence 24555667999999998743 56778899999999999999 9999999999999
Q ss_pred EEEEEccCCceeEEEccCcceeEEEEeeccCCc-cCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCccee
Q 003423 159 IRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF 237 (821)
Q Consensus 159 i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (821)
|++||+.+++....+..+. .+.++.+ ++ ++.++++|+.||.|++||..
T Consensus 189 v~iwd~~~~~~~~~~~~~~--~v~~~~~---~~~~~~~l~~~s~d~~v~iwd~~-------------------------- 237 (393)
T 1erj_A 189 VRIWDLRTGQCSLTLSIED--GVTTVAV---SPGDGKYIAAGSLDRAVRVWDSE-------------------------- 237 (393)
T ss_dssp EEEEETTTTEEEEEEECSS--CEEEEEE---CSTTCCEEEEEETTSCEEEEETT--------------------------
T ss_pred EEEEECCCCeeEEEEEcCC--CcEEEEE---ECCCCCEEEEEcCCCcEEEEECC--------------------------
Confidence 9999999998877765443 2455555 34 78999999999999999988
Q ss_pred eecccccceeeEEEE-------ecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCC----CceeeeceEEec
Q 003423 238 KLQDQQHTAVNLFRL-------VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD----SIEEVGSSVLYG 306 (821)
Q Consensus 238 ~~~~~~~~~~~~~~~-------~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~ 306 (821)
....+..+ .+|.+.|.+++|+|++++|++++.|++|++||+......... ...+. ..+.+
T Consensus 238 -------~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~--~~~~~ 308 (393)
T 1erj_A 238 -------TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE--VTYIG 308 (393)
T ss_dssp -------TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEE--EEEEC
T ss_pred -------CCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcce--EEEec
Confidence 22333333 589999999999999999999999999999999864321000 01111 46789
Q ss_pred cceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEec------CCCEEEEEeCCCcEEEEEc
Q 003423 307 HNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDS------LSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 307 h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~------~~~~l~tg~~dg~I~iwd~ 377 (821)
|...|.+++|+ +.+|++++.|+.|++||. .++.+..+.+|.+ .|.++++++ ++++|++|+.||.|++|++
T Consensus 309 h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~-~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 309 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN-SVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC-CEEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence 99999999998 589999999999999999 7888999999998 699999976 6789999999999999998
Q ss_pred CC
Q 003423 378 QA 379 (821)
Q Consensus 378 ~~ 379 (821)
..
T Consensus 388 ~~ 389 (393)
T 1erj_A 388 KK 389 (393)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 27
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.7e-33 Score=291.38 Aligned_cols=287 Identities=14% Similarity=0.227 Sum_probs=233.1
Q ss_pred eeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCc
Q 003423 55 TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW 134 (821)
Q Consensus 55 ~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 134 (821)
++.++++.|.. .|.+++|+|++ ..++++..|+.|++||+..+ ..+..+.+|..+
T Consensus 4 ~~~~~~~~h~~-~V~~~~fsp~~----------~~l~s~~~dg~v~lWd~~~~---------------~~~~~~~~~~~~ 57 (304)
T 2ynn_A 4 DIKKTFSNRSD-RVKGIDFHPTE----------PWVLTTLYSGRVELWNYETQ---------------VEVRSIQVTETP 57 (304)
T ss_dssp CCEEEEEEECS-CEEEEEECSSS----------SEEEEEETTSEEEEEETTTT---------------EEEEEEECCSSC
T ss_pred eeEEeecCCCC-ceEEEEECCCC----------CEEEEEcCCCcEEEEECCCC---------------ceeEEeeccCCc
Confidence 34566776655 79999999764 35666667999999998743 467788899999
Q ss_pred EEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCC
Q 003423 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (821)
Q Consensus 135 I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~ 214 (821)
|.+++|+| ++++|++|+.|++|++||+.+++.+..+..|.. .+.++++ +|++.+|++|+.||.|++||+..
T Consensus 58 v~~~~~~~---~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~-~v~~~~~---~~~~~~l~sgs~D~~v~lWd~~~-- 128 (304)
T 2ynn_A 58 VRAGKFIA---RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD-YIRSIAV---HPTKPYVLSGSDDLTVKLWNWEN-- 128 (304)
T ss_dssp EEEEEEEG---GGTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEE---CSSSSEEEEEETTSCEEEEEGGG--
T ss_pred EEEEEEeC---CCCEEEEECCCCEEEEEECCCCcEEEEEeCCCC-cEEEEEE---cCCCCEEEEECCCCeEEEEECCC--
Confidence 99999999 999999999999999999999999988887765 4677777 57889999999999999999981
Q ss_pred cccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecccCcccCC
Q 003423 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDS 293 (821)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 293 (821)
.......+.+|...|.+++|+| ++.+|++|+.|++|++||+.....
T Consensus 129 ------------------------------~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~--- 175 (304)
T 2ynn_A 129 ------------------------------NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP--- 175 (304)
T ss_dssp ------------------------------TTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC---
T ss_pred ------------------------------CcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc---
Confidence 2245667889999999999999 678999999999999999987654
Q ss_pred CCceeeeceEEeccceeEEEEEEc----CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeC
Q 003423 294 DSIEEVGSSVLYGHNARVWDCCLT----DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF 368 (821)
Q Consensus 294 ~~~~~~~~~~~~~h~~~i~~v~~~----~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~ 368 (821)
.. ....+|...+..+.|. +.+|++++.|++|++||+ .++++.++.+|.. .|.+++|+|++++|++|+.
T Consensus 176 --~~----~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~ 248 (304)
T 2ynn_A 176 --NF----TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSE 248 (304)
T ss_dssp --SE----EEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEET
T ss_pred --cc----eeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC-CEEEEEECCCCCEEEEEcC
Confidence 21 2344677889999886 368999999999999999 7889999999998 6999999999999999999
Q ss_pred CCcEEEEEcCCc-CCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCe--EEEEecCCcEEEE
Q 003423 369 DSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT--LYIATNHGYLYHT 445 (821)
Q Consensus 369 dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~--~l~~~~~g~~~~~ 445 (821)
||.|++||+.+. ..++ +..+.+.+.+++|+|++. +++++.++.+..+
T Consensus 249 Dg~i~iWd~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~ 298 (304)
T 2ynn_A 249 DGTLKIWNSSTYKVEKT------------------------------LNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298 (304)
T ss_dssp TSCEEEEETTTCCEEEE------------------------------ECCSSSSEEEEEECTTCGGGCEEEEETTEEEEE
T ss_pred CCeEEEEECCCCceeee------------------------------ccCCCccEEEEEECCCCCceEEEEecCCceEEE
Confidence 999999998542 1111 223446689999999773 4555554444433
Q ss_pred E
Q 003423 446 K 446 (821)
Q Consensus 446 ~ 446 (821)
.
T Consensus 299 ~ 299 (304)
T 2ynn_A 299 S 299 (304)
T ss_dssp E
T ss_pred E
Confidence 3
No 28
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.1e-35 Score=313.29 Aligned_cols=219 Identities=16% Similarity=0.247 Sum_probs=180.7
Q ss_pred cceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEee
Q 003423 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (821)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (821)
+.....+.+|.+.|++++|+| ++++|++|+.|++|++||+.+++....+..+... +.+++| +|++.+|++|+.
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp---~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~-v~~~~~---s~~g~~las~~~ 128 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTP---EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPW-VMECAF---APNGQSVACGGL 128 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECT---TSSCEEEEETTSEEEEEETTTTEEEEEEECCCTT-CCCCEE---CTTSSEEEECCS
T ss_pred eEEeecccccccEEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCccceEEecCCCC-EEEEEE---CCCCCEEEEeeC
Confidence 456788999999999999999 9999999999999999999999988888766543 444555 689999999999
Q ss_pred CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCC-CEEEEEeCCCeE
Q 003423 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSA 280 (821)
Q Consensus 202 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~~l~s~s~Dg~i 280 (821)
|+.|++|++....... ........+.+|.+.|.++.|+|++ ..|++|+.|++|
T Consensus 129 d~~v~iw~~~~~~~~~--------------------------~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i 182 (380)
T 3iz6_a 129 DSACSIFNLSSQADRD--------------------------GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTC 182 (380)
T ss_dssp SSCCEEEECCCCSSCC--------------------------CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCE
T ss_pred CCcEEEEECCCCcccc--------------------------CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcE
Confidence 9999999987211000 0122334567999999999999974 579999999999
Q ss_pred EEEecccCcccCCCCceeeeceEEeccceeEEEEEEc---CCEEEEEeCCCeEEEEcC--CCceeeEeecccCCCeEEEE
Q 003423 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWRCL 355 (821)
Q Consensus 281 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~~~l~s~~~dg~i~iwd~--~~~~~~~~~~h~~~~i~~l~ 355 (821)
++||+.+++. ..........+|...|.+++|. ++++++|+.|++|++||+ .++.+..+.+|.+ .|.+++
T Consensus 183 ~~wd~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~-~v~~v~ 256 (380)
T 3iz6_a 183 VLWDVTTGQR-----ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEG-DINSVK 256 (380)
T ss_dssp EEECTTTCCE-----EEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSS-CCCEEE
T ss_pred EEEEcCCCcE-----EEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCC-CeEEEE
Confidence 9999998765 3211111226799999999996 589999999999999998 4578888999998 699999
Q ss_pred EecCCCEEEEEeCCCcEEEEEcCC
Q 003423 356 YDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 356 ~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
|+|++++|++|+.||.|++||++.
T Consensus 257 ~~p~~~~l~s~s~D~~i~lwd~~~ 280 (380)
T 3iz6_a 257 FFPDGQRFGTGSDDGTCRLFDMRT 280 (380)
T ss_dssp ECTTSSEEEEECSSSCEEEEETTT
T ss_pred EecCCCeEEEEcCCCeEEEEECCC
Confidence 999999999999999999999853
No 29
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.6e-34 Score=306.07 Aligned_cols=292 Identities=13% Similarity=0.091 Sum_probs=204.8
Q ss_pred ecCCCcEEEEEEcCCCCEEEEEeC------CCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc-CCEEEEEe
Q 003423 253 VGHEGSIFRIEWSSCGSKLVSVSD------DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAG 325 (821)
Q Consensus 253 ~~h~~~I~~l~~s~~~~~l~s~s~------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~l~s~~ 325 (821)
.+|++.|.+++|+|||++|++++. |++|++|+..++.. ..... ....+|...|.+++|+ +..+++++
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~-----~~~~~-~~~~~~~~~V~~~~~s~d~~~l~~s 112 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP-----NESLC-TAGVQTEAGVTDVAWVSEKGILVAS 112 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC--------CGGGC-SEEEECSSCEEEEEEETTTEEEEEE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCc-----ceeEe-cccCCCCCCEEEEEEcCCCCEEEEE
Confidence 479999999999999999999998 77899999877643 11111 3667899999999999 57889999
Q ss_pred CCCeEEEEcC-CCcee----eEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcce
Q 003423 326 EDCTCRVWGS-DGKQL----KMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEI 400 (821)
Q Consensus 326 ~dg~i~iwd~-~~~~~----~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 400 (821)
.||+|++||+ +++.. ....+|.+ .|++++|+|++++|++|+.||.|++||++...
T Consensus 113 ~dg~v~lWd~~~~~~~~~~~~~~~~h~~-~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~------------------- 172 (357)
T 4g56_B 113 DSGAVELWEILEKESLLVNKFAKYEHDD-IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA------------------- 172 (357)
T ss_dssp TTSCEEEC--------CCCCEEECCCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTTE-------------------
T ss_pred CCCEEEEeeccccceeEEEeeccCCCCC-CEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-------------------
Confidence 9999999999 44432 23446777 69999999999999999999999999985420
Q ss_pred EEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCC
Q 003423 401 FSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYP 480 (821)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s 480 (821)
....+..|...|.+++|++++.
T Consensus 173 ----------~~~~~~~h~~~v~~v~~s~~~~------------------------------------------------ 194 (357)
T 4g56_B 173 ----------VLKSYNAHSSEVNCVAACPGKD------------------------------------------------ 194 (357)
T ss_dssp ----------EEEEECCCSSCEEEEEECTTCS------------------------------------------------
T ss_pred ----------EEEEEcCCCCCEEEEEEccCCC------------------------------------------------
Confidence 0111233445566666665431
Q ss_pred CCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCC-CeEEEEECCCCcEEEeeecCCCCcc
Q 003423 481 CGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLG-HRFIFTADPKGRLKLWQLCDPFSSV 559 (821)
Q Consensus 481 ~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~ 559 (821)
.++++++.||.|++||+.++...... ... .....+. ..+++|+ +.+|++++.|+.|++||+...
T Consensus 195 ----~~~~s~~~dg~v~~wd~~~~~~~~~~----~~~-~~~~~v~--~v~~sp~~~~~la~g~~d~~i~~wd~~~~---- 259 (357)
T 4g56_B 195 ----TIFLSCGEDGRILLWDTRKPKPATRI----DFC-ASDTIPT--SVTWHPEKDDTFACGDETGNVSLVNIKNP---- 259 (357)
T ss_dssp ----SCEEEEETTSCEEECCTTSSSCBCBC----CCT-TCCSCEE--EEEECTTSTTEEEEEESSSCEEEEESSCG----
T ss_pred ----ceeeeeccCCceEEEECCCCceeeee----eec-ccccccc--chhhhhcccceEEEeecccceeEEECCCC----
Confidence 34455555666666666543321110 000 0011111 1234443 568999999999999999876
Q ss_pred cccCCccceeeeeEEEecccCceEEEEEeecCC-CEEEEEcCCCcEEEEecCcccccccccccccccCcccccccccCCc
Q 003423 560 CYESSKTNNVFLVAEFSSCFGARIMCLDASFED-EVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGIS 638 (821)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 638 (821)
++...+ ..|...|++++|+|++ ++||+|+.||+|+|||+... +.+..+ .| ..
T Consensus 260 ----------~~~~~~-~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~-------------~~~~~~--~H-~~ 312 (357)
T 4g56_B 260 ----------DSAQTS-AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS-------------EVFRDL--SH-RD 312 (357)
T ss_dssp ----------GGCEEE-CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC-------------EEEEEC--CC-SS
T ss_pred ----------cEeEEE-eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC-------------cEeEEC--CC-CC
Confidence 344455 6789999999999987 68999999999999998732 223333 56 66
Q ss_pred ceEEEEEEecCCCceEEEEecCCCeEEEEEeecC
Q 003423 639 TVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKD 672 (821)
Q Consensus 639 ~Vt~i~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~ 672 (821)
.|++|+|+| .++.+|+|+|.||+|++|++...
T Consensus 313 ~V~~vafsP--~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 313 FVTGVAWSP--LDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp CEEEEEECS--SSTTEEEEEETTSCEEEEECC--
T ss_pred CEEEEEEeC--CCCCEEEEEcCCCeEEEEECCCC
Confidence 899999996 46688999999999999999653
No 30
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.5e-33 Score=294.07 Aligned_cols=289 Identities=17% Similarity=0.250 Sum_probs=231.8
Q ss_pred cceeeeccCCCCcEEEEEEeecCCCC-CEEEEEECCCcEEEEEccCC-----ceeEEEccCcceeEEEEeeccCCccCeE
Q 003423 122 LSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNS-----SIILEVHSPERCLLYSMKLWGDNLEALR 195 (821)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~-~~l~t~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~s~~~~~~s~~~~~ 195 (821)
+.+..++.+|.++|++++|+| ++ ++|++|+.|++|++||+... ..+..+.+|.. .+.++.| ++++.+
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~---~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~-~v~~~~~---s~dg~~ 79 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSA---GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH-IVQDCTL---TADGAY 79 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECS---SCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSS-CEEEEEE---CTTSSE
T ss_pred EEEEEEEccccceEEEEEccC---CCccEEEEecCCccEEEecCCCCCccccccceEEeCCcc-cEEEEEE---CCCCCE
Confidence 566778999999999999998 55 89999999999999998743 23455666654 4666776 689999
Q ss_pred EEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEe
Q 003423 196 IASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (821)
Q Consensus 196 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s 275 (821)
|++|+.|+.|++||+. +.+.+..+.+|.+.|.+++|+|++++|++++
T Consensus 80 l~s~s~D~~v~~wd~~---------------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 126 (319)
T 3frx_A 80 ALSASWDKTLRLWDVA---------------------------------TGETYQRFVGHKSDVMSVDIDKKASMIISGS 126 (319)
T ss_dssp EEEEETTSEEEEEETT---------------------------------TTEEEEEEECCSSCEEEEEECTTSCEEEEEE
T ss_pred EEEEeCCCEEEEEECC---------------------------------CCCeeEEEccCCCcEEEEEEcCCCCEEEEEe
Confidence 9999999999999998 6677888999999999999999999999999
Q ss_pred CCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC--------CEEEEEeCCCeEEEEcC-CCceeeEeecc
Q 003423 276 DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--------SFIITAGEDCTCRVWGS-DGKQLKMIKEH 346 (821)
Q Consensus 276 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--------~~l~s~~~dg~i~iwd~-~~~~~~~~~~h 346 (821)
.|++|++||++.... ..+.+|...|.++++.+ ..+++++.|++|++||+ .++....+.+|
T Consensus 127 ~D~~i~vwd~~~~~~-----------~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h 195 (319)
T 3frx_A 127 RDKTIKVWTIKGQCL-----------ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195 (319)
T ss_dssp TTSCEEEEETTSCEE-----------EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCeEEEEECCCCeE-----------EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCC
Confidence 999999999976433 57889999999999974 27999999999999999 67778889999
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEE
Q 003423 347 IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLH 426 (821)
Q Consensus 347 ~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 426 (821)
.. .|.+++|+|++++|++|+.||.|++||+.... .+..+ . ....+.+++
T Consensus 196 ~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~-----------------~~~~~------------~-~~~~v~~~~ 244 (319)
T 3frx_A 196 NS-NINTLTASPDGTLIASAGKDGEIMLWNLAAKK-----------------AMYTL------------S-AQDEVFSLA 244 (319)
T ss_dssp CS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTE-----------------EEEEE------------E-CCSCEEEEE
T ss_pred CC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------------EEEEe------------c-CCCcEEEEE
Confidence 88 69999999999999999999999999995421 01111 1 124589999
Q ss_pred eecCCeEEEEecCCcEEEEEecCCCcceeeEeee-------ccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEE
Q 003423 427 LTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQ-------VSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIV 499 (821)
Q Consensus 427 f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~ 499 (821)
|+|++.+++++.++.+..+.+.. ........ ......+.++.+.+ +++++++|+.||.|++|
T Consensus 245 ~sp~~~~la~~~~~~i~v~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--------dg~~l~sg~~Dg~i~vW 313 (319)
T 3frx_A 245 FSPNRYWLAAATATGIKVFSLDP---QYLVDDLRPEFAGYSKAAEPHAVSLAWSA--------DGQTLFAGYTDNVIRVW 313 (319)
T ss_dssp ECSSSSEEEEEETTEEEEEEETT---EEEEEEECCCCTTCCGGGCCCEEEEEECT--------TSSEEEEEETTSCEEEE
T ss_pred EcCCCCEEEEEcCCCcEEEEeCc---CeeeeccCccccccccCcCcceeEEEECC--------CCCEEEEeecCceEEEE
Confidence 99999988888777665444432 21111111 11234566777754 56999999999999999
Q ss_pred EecC
Q 003423 500 RVVG 503 (821)
Q Consensus 500 ~~~~ 503 (821)
++.+
T Consensus 314 d~~t 317 (319)
T 3frx_A 314 QVMT 317 (319)
T ss_dssp EEEE
T ss_pred EEee
Confidence 9865
No 31
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=295.73 Aligned_cols=297 Identities=19% Similarity=0.243 Sum_probs=219.4
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCC--eeeeEEE-eeccccEEeEEeccccCCCCCCccceeeEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG--TLIRPFQ-VFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~--~~~~~~~-~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l 91 (821)
|.++|++++|+ |+ +|++|. |+.|++||+.++ +.+..+. ..+...|.+++|+|++ ..++
T Consensus 13 h~~~v~~~~~s--~~------~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~----------~~la 74 (330)
T 2hes_X 13 YKEKIWSFDFS--QG------ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT----------SLLA 74 (330)
T ss_dssp CSSCEEEEEEE--TT------EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS----------SEEE
T ss_pred CCCceeeeccC--CC------EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC----------CEEE
Confidence 78899999999 65 666655 899999999875 4555552 2144579999999763 2455
Q ss_pred EEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCC----
Q 003423 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS---- 167 (821)
Q Consensus 92 ~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~---- 167 (821)
+++.|+.|++|++...... ....+....+.+|.+.|++++|+| ++++||+|+.|++|++||+...
T Consensus 75 s~s~D~~v~iw~~~~~~~~--------~~~~~~~~~~~~h~~~V~~v~~sp---~g~~las~s~D~~v~iwd~~~~~~~~ 143 (330)
T 2hes_X 75 AGSFDSTVSIWAKEESADR--------TFEMDLLAIIEGHENEVKGVAWSN---DGYYLATCSRDKSVWIWETDESGEEY 143 (330)
T ss_dssp EEETTSCEEEEEC---------------CCCEEEEEEC----CEEEEEECT---TSCEEEEEETTSCEEEEECCTTCCCC
T ss_pred EEeCCCcEEEEEcccCcCc--------cccceeEEEEcCCCCcEEEEEECC---CCCEEEEEeCCCEEEEEeccCCCCCe
Confidence 5567999999998642100 012356778899999999999999 9999999999999999999532
Q ss_pred ceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccccccee
Q 003423 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (821)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (821)
+.+..+..|.. .+.++.| +|++.+|++|+.|+.|++||... ....
T Consensus 144 ~~~~~~~~h~~-~v~~v~~---~p~~~~l~s~s~D~~i~iW~~~~-------------------------------~~~~ 188 (330)
T 2hes_X 144 ECISVLQEHSQ-DVKHVIW---HPSEALLASSSYDDTVRIWKDYD-------------------------------DDWE 188 (330)
T ss_dssp EEEEEECCCSS-CEEEEEE---CSSSSEEEEEETTSCEEEEEEET-------------------------------TEEE
T ss_pred EEEEEeccCCC-ceEEEEE---CCCCCEEEEEcCCCeEEEEECCC-------------------------------CCee
Confidence 34555665544 4667777 57899999999999999999871 0236
Q ss_pred eEEEEecCCCcEEEEEEcCC--CCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEec-cceeEEEEEEc-CCEEEE
Q 003423 248 NLFRLVGHEGSIFRIEWSSC--GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG-HNARVWDCCLT-DSFIIT 323 (821)
Q Consensus 248 ~~~~~~~h~~~I~~l~~s~~--~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~v~~~-~~~l~s 323 (821)
++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+.............. ..+.+ |...|++++|+ +.+|++
T Consensus 189 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~--~~~~~~h~~~v~~v~~s~~~~l~s 266 (330)
T 2hes_X 189 CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCE--AILPDVHKRQVYNVAWGFNGLIAS 266 (330)
T ss_dssp EEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEE--EECCSCCSSCEEEEEECTTSCEEE
T ss_pred EEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEe--eecccccccceEEEEEcCCCEEEE
Confidence 77888999999999999998 67899999999999999976422000000111 23444 89999999998 578999
Q ss_pred EeCCCeEEEEcC-CCc--eeeE-eecccCCCeEEEEEec--CCCEEEEEeCCCcEEEEEcC
Q 003423 324 AGEDCTCRVWGS-DGK--QLKM-IKEHIGRGIWRCLYDS--LSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 324 ~~~dg~i~iwd~-~~~--~~~~-~~~h~~~~i~~l~~~~--~~~~l~tg~~dg~I~iwd~~ 378 (821)
++.||+|++|+. .++ .... ..+|....|.+++|+| ++++|++|+.||.|++|+++
T Consensus 267 ~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 267 VGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp EETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred EeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence 999999999998 442 2333 3566653599999999 68899999999999999985
No 32
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=296.68 Aligned_cols=294 Identities=17% Similarity=0.238 Sum_probs=228.5
Q ss_pred eee-eeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEE--eeccccEEeEEeccccCCCCCCccceeeEE
Q 003423 16 YLG-EISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQ--VFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (821)
Q Consensus 16 ~~~-~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~--~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l 91 (821)
|.. +|.+++|+ |+ +.+|++|. |+.|+|||+++++...... ..+...|.+++|+|++ ..++
T Consensus 14 h~~~~v~~l~~s--p~----g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g----------~~l~ 77 (345)
T 3fm0_A 14 HPDSRCWFLAWN--PA----GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG----------NYLA 77 (345)
T ss_dssp STTSCEEEEEEC--TT----SSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS----------SEEE
T ss_pred CCCCcEEEEEEC--CC----CCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC----------CEEE
Confidence 444 89999999 99 66777665 8999999999887543332 2234479999999763 2455
Q ss_pred EEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce--
Q 003423 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-- 169 (821)
Q Consensus 92 ~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~-- 169 (821)
+++.|+.+++|++..+. .+....+.+|.+.|.+++|+| ++++|++|+.|++|++||+.++..
T Consensus 78 s~s~D~~v~iw~~~~~~-------------~~~~~~~~~h~~~v~~v~~sp---~~~~l~s~s~D~~v~iwd~~~~~~~~ 141 (345)
T 3fm0_A 78 SASFDATTCIWKKNQDD-------------FECVTTLEGHENEVKSVAWAP---SGNLLATCSRDKSVWVWEVDEEDEYE 141 (345)
T ss_dssp EEETTSCEEEEEECCC--------------EEEEEEECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEEECTTSCEE
T ss_pred EEECCCcEEEEEccCCC-------------eEEEEEccCCCCCceEEEEeC---CCCEEEEEECCCeEEEEECCCCCCeE
Confidence 56679999999987543 456788999999999999999 999999999999999999987643
Q ss_pred -eEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceee
Q 003423 170 -ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (821)
Q Consensus 170 -~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (821)
+..+..+.. .+.++.+ +|++.+|++|+.|+.|++||.... ....
T Consensus 142 ~~~~~~~h~~-~v~~~~~---~p~~~~l~s~s~d~~i~~w~~~~~-------------------------------~~~~ 186 (345)
T 3fm0_A 142 CVSVLNSHTQ-DVKHVVW---HPSQELLASASYDDTVKLYREEED-------------------------------DWVC 186 (345)
T ss_dssp EEEEECCCCS-CEEEEEE---CSSSSCEEEEETTSCEEEEEEETT-------------------------------EEEE
T ss_pred EEEEecCcCC-CeEEEEE---CCCCCEEEEEeCCCcEEEEEecCC-------------------------------CEEE
Confidence 344444443 4666776 578899999999999999998710 2345
Q ss_pred EEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCC-------CceeeeceEEec-cceeEEEEEEc--C
Q 003423 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD-------SIEEVGSSVLYG-HNARVWDCCLT--D 318 (821)
Q Consensus 249 ~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~-------~~~~~~~~~~~~-h~~~i~~v~~~--~ 318 (821)
...+.+|.+.|.+++|+|++++|++++.|++|++||.......... ..+++ ..+.+ |...|++++|+ +
T Consensus 187 ~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~h~~~v~~v~~~~~~ 264 (345)
T 3fm0_A 187 CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI--CTLSGFHSRTIYDIAWCQLT 264 (345)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEE--EEECSSCSSCEEEEEECTTT
T ss_pred EEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcccee--EEecCCCCCcEEEEEEecCC
Confidence 6788999999999999999999999999999999997543221000 01111 23444 88999999998 5
Q ss_pred CEEEEEeCCCeEEEEcCCCc-----e-----eeEeecccCCCeEEEEEecCC-CEEEEEeCCCcEEEEEcCC
Q 003423 319 SFIITAGEDCTCRVWGSDGK-----Q-----LKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 319 ~~l~s~~~dg~i~iwd~~~~-----~-----~~~~~~h~~~~i~~l~~~~~~-~~l~tg~~dg~I~iwd~~~ 379 (821)
..|++++.|+.|++|+.+.. . .....+|.. .|++++|+|++ .+|++|+.||.|++|++..
T Consensus 265 ~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 265 GALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQ-DVNCVAWNPKEPGLLASCSDDGEVAFWKYQR 335 (345)
T ss_dssp CCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSS-CEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred CEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccC-cEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence 89999999999999997321 1 122346777 69999999987 5999999999999999954
No 33
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2e-32 Score=285.04 Aligned_cols=207 Identities=20% Similarity=0.347 Sum_probs=183.7
Q ss_pred cceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEee
Q 003423 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (821)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (821)
......+.+|.+.|++++|+| ++++|++|+.|+.|++||+.+++....+..+... +.++++ ++++.+|++|+.
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~---~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~-v~~~~~---~~~~~~l~s~~~ 85 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAW---SSDSNLLVSASD 85 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC-EEEEEE---CTTSSEEEEEET
T ss_pred ceeEEEEcccCCcEEEEEECC---CCCEEEEeeCCCeEEEEeCCCcccchhhccCCCc-eEEEEE---cCCCCEEEEECC
Confidence 466778899999999999999 9999999999999999999999888888766543 567776 578999999999
Q ss_pred CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 003423 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (821)
Q Consensus 202 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~ 281 (821)
||.|++||+. ....+..+.+|...|.+++|+|++++|++++.|++|+
T Consensus 86 d~~i~vwd~~---------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~ 132 (312)
T 4ery_A 86 DKTLKIWDVS---------------------------------SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 132 (312)
T ss_dssp TSEEEEEETT---------------------------------TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred CCEEEEEECC---------------------------------CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Confidence 9999999998 6677888899999999999999999999999999999
Q ss_pred EEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEec
Q 003423 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDS 358 (821)
Q Consensus 282 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~ 358 (821)
+||+++++. . ..+..|..+|.+++|+ +.++++++.||.|++||+ .++.+..+..+....+..++|+|
T Consensus 133 iwd~~~~~~-----~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (312)
T 4ery_A 133 IWDVKTGKC-----L-----KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 202 (312)
T ss_dssp EEETTTCCE-----E-----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT
T ss_pred EEECCCCEE-----E-----EEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECC
Confidence 999988654 3 4778899999999998 579999999999999999 67777776554444699999999
Q ss_pred CCCEEEEEeCCCcEEEEEcC
Q 003423 359 LSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 359 ~~~~l~tg~~dg~I~iwd~~ 378 (821)
++++|++++.||.|++||+.
T Consensus 203 ~~~~l~~~~~d~~i~iwd~~ 222 (312)
T 4ery_A 203 NGKYILAATLDNTLKLWDYS 222 (312)
T ss_dssp TSSEEEEEETTTEEEEEETT
T ss_pred CCCEEEEEcCCCeEEEEECC
Confidence 99999999999999999984
No 34
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.8e-33 Score=290.87 Aligned_cols=281 Identities=15% Similarity=0.227 Sum_probs=224.0
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCC-----CeeeeEEEeeccccEEeEEeccccCCCCCCccceee
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA-----GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t-----~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~ 89 (821)
|.++|++++|+ |+ +..+|++|+ |+.|++||+.+ +.++..++.|.. .|.++.|++++ ..
T Consensus 16 H~~~V~~l~~~--~~---~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~-~v~~~~~s~dg----------~~ 79 (319)
T 3frx_A 16 HNGWVTSLATS--AG---QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH-IVQDCTLTADG----------AY 79 (319)
T ss_dssp CSSCEEEEEEC--SS---CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSS-CEEEEEECTTS----------SE
T ss_pred ccceEEEEEcc--CC---CccEEEEecCCccEEEecCCCCCccccccceEEeCCcc-cEEEEEECCCC----------CE
Confidence 88999999999 86 346777765 89999999864 345667776555 79999999663 25
Q ss_pred EEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce
Q 003423 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (821)
Q Consensus 90 ~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~ 169 (821)
+++++.|+.|++||+..+ +....+.+|.+.|.+++|+| ++.+|++|+.|++|++||+. +..
T Consensus 80 l~s~s~D~~v~~wd~~~~---------------~~~~~~~~h~~~v~~~~~~~---~~~~l~s~s~D~~i~vwd~~-~~~ 140 (319)
T 3frx_A 80 ALSASWDKTLRLWDVATG---------------ETYQRFVGHKSDVMSVDIDK---KASMIISGSRDKTIKVWTIK-GQC 140 (319)
T ss_dssp EEEEETTSEEEEEETTTT---------------EEEEEEECCSSCEEEEEECT---TSCEEEEEETTSCEEEEETT-SCE
T ss_pred EEEEeCCCEEEEEECCCC---------------CeeEEEccCCCcEEEEEEcC---CCCEEEEEeCCCeEEEEECC-CCe
Confidence 666677999999998743 56778899999999999999 99999999999999999986 456
Q ss_pred eEEEccCcceeEEEEeeccCC---ccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccce
Q 003423 170 ILEVHSPERCLLYSMKLWGDN---LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (821)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s---~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (821)
+..+..+.. .+.++.+.+.. .++.++++|+.|+.|++||+. ..
T Consensus 141 ~~~~~~h~~-~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~---------------------------------~~ 186 (319)
T 3frx_A 141 LATLLGHND-WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN---------------------------------QF 186 (319)
T ss_dssp EEEECCCSS-CEEEEEECCC------CCEEEEEETTSCEEEEETT---------------------------------TT
T ss_pred EEEEeccCC-cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECC---------------------------------cc
Confidence 666666544 45666665432 256689999999999999998 56
Q ss_pred eeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC--CEEEEE
Q 003423 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITA 324 (821)
Q Consensus 247 ~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~~l~s~ 324 (821)
.....+.+|...|.+++|+|++++|++++.||+|++||+.+++. . ..+ .+...|.+++|++ .+++++
T Consensus 187 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~-----~-----~~~-~~~~~v~~~~~sp~~~~la~~ 255 (319)
T 3frx_A 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA-----M-----YTL-SAQDEVFSLAFSPNRYWLAAA 255 (319)
T ss_dssp EEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE-----E-----EEE-ECCSCEEEEEECSSSSEEEEE
T ss_pred hhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-----E-----EEe-cCCCcEEEEEEcCCCCEEEEE
Confidence 67778899999999999999999999999999999999998765 2 233 3456899999993 455555
Q ss_pred eCCCeEEEEcCCC-ceeeEeec--------ccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 325 GEDCTCRVWGSDG-KQLKMIKE--------HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 325 ~~dg~i~iwd~~~-~~~~~~~~--------h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
+ +..+++|+++. ..+..+.. |.. .+.+++|+|+|++|++|+.||.|++||+.
T Consensus 256 ~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 256 T-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP-HAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp E-TTEEEEEEETTEEEEEEECCCCTTCCGGGCC-CEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred c-CCCcEEEEeCcCeeeeccCccccccccCcCc-ceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 4 56799999954 33444432 334 58999999999999999999999999984
No 35
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.9e-33 Score=300.15 Aligned_cols=198 Identities=23% Similarity=0.436 Sum_probs=169.4
Q ss_pred CCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcc-----------------eeEEEEeeccCCcc
Q 003423 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPER-----------------CLLYSMKLWGDNLE 192 (821)
Q Consensus 130 ~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~-----------------~~~~s~~~~~~s~~ 192 (821)
+|.+.|++++|+| +|++||+|+ ++.+++|++.+++.+..+..+.. ..+.+++| +++
T Consensus 62 ~h~~~V~~v~fsp---dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~---s~d 134 (393)
T 1erj_A 62 DHTSVVCCVKFSN---DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF---SPD 134 (393)
T ss_dssp ECSSCCCEEEECT---TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEE---CTT
T ss_pred CCCCEEEEEEECC---CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEE---CCC
Confidence 6999999999999 999999976 78999999999988877754321 12667777 689
Q ss_pred CeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEE
Q 003423 193 ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLV 272 (821)
Q Consensus 193 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~ 272 (821)
+.+|++|+.|+.|++||+. ..+.+..+.+|...|.+++|+|++++|+
T Consensus 135 g~~l~s~~~d~~i~iwd~~---------------------------------~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 181 (393)
T 1erj_A 135 GKFLATGAEDRLIRIWDIE---------------------------------NRKIVMILQGHEQDIYSLDYFPSGDKLV 181 (393)
T ss_dssp SSEEEEEETTSCEEEEETT---------------------------------TTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CCEEEEEcCCCeEEEEECC---------------------------------CCcEEEEEccCCCCEEEEEEcCCCCEEE
Confidence 9999999999999999998 6677888999999999999999999999
Q ss_pred EEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc---CCEEEEEeCCCeEEEEcC-CCceeeEe-----
Q 003423 273 SVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMI----- 343 (821)
Q Consensus 273 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~~~l~s~~~dg~i~iwd~-~~~~~~~~----- 343 (821)
+++.|++|++||+++++. .....+...+.+++|+ +.+|++++.|++|++||+ .++.+..+
T Consensus 182 s~s~d~~v~iwd~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~ 250 (393)
T 1erj_A 182 SGSGDRTVRIWDLRTGQC-----------SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE 250 (393)
T ss_dssp EEETTSEEEEEETTTTEE-----------EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC----
T ss_pred EecCCCcEEEEECCCCee-----------EEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccccc
Confidence 999999999999998765 2334466789999997 479999999999999999 66666665
Q ss_pred --ecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 344 --KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 344 --~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
.+|.. .|++++|+|++++|++|+.|+.|++||+..
T Consensus 251 ~~~~h~~-~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 251 SGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp --CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CCCCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 56777 699999999999999999999999999853
No 36
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-33 Score=302.36 Aligned_cols=338 Identities=14% Similarity=0.103 Sum_probs=243.8
Q ss_pred cCCCCcEEEEEEeecCCCCC-EEEEEECCCcEEEEEc----cCCc------eeEEEccC---------cceeEEEEeecc
Q 003423 129 PRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDI----SNSS------IILEVHSP---------ERCLLYSMKLWG 188 (821)
Q Consensus 129 ~~h~~~I~~~~~~~~~~~~~-~l~t~~~d~~i~iwd~----~~~~------~~~~~~~~---------~~~~~~s~~~~~ 188 (821)
..|.+.|++++|+| +++ +||+|+.|+.|++||+ .+++ ....+..+ +...+.+++|
T Consensus 42 ~~~~~~v~~~~~s~---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-- 116 (425)
T 1r5m_A 42 IVKLDNIVSSTWNP---LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAW-- 116 (425)
T ss_dssp EEECSCCSEEEECS---SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEE--
T ss_pred eeccCceEEEEECC---CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEE--
Confidence 45668999999999 999 9999999999999999 8877 34444331 3445777877
Q ss_pred CCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCC
Q 003423 189 DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG 268 (821)
Q Consensus 189 ~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~ 268 (821)
++++.+|++|+.||.|++||. ....+..+.+|...|.+++|+|++
T Consensus 117 -s~~~~~l~~~~~dg~i~i~~~----------------------------------~~~~~~~~~~~~~~v~~~~~~~~~ 161 (425)
T 1r5m_A 117 -SHDGNSIVTGVENGELRLWNK----------------------------------TGALLNVLNFHRAPIVSVKWNKDG 161 (425)
T ss_dssp -CTTSSEEEEEETTSCEEEEET----------------------------------TSCEEEEECCCCSCEEEEEECTTS
T ss_pred -cCCCCEEEEEeCCCeEEEEeC----------------------------------CCCeeeeccCCCccEEEEEECCCC
Confidence 678999999999999999994 345677788999999999999999
Q ss_pred CEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEecccee---------------EEEEEEc-CCEEEEEeCCCeEEE
Q 003423 269 SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR---------------VWDCCLT-DSFIITAGEDCTCRV 332 (821)
Q Consensus 269 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~---------------i~~v~~~-~~~l~s~~~dg~i~i 332 (821)
++|++++.|+.|++||+.+++. . ..+..+... +.+++|+ +..+++++.||.|++
T Consensus 162 ~~l~~~~~d~~i~iwd~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~ 231 (425)
T 1r5m_A 162 THIISMDVENVTILWNVISGTV-----M-----QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFV 231 (425)
T ss_dssp SEEEEEETTCCEEEEETTTTEE-----E-----EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEE
T ss_pred CEEEEEecCCeEEEEECCCCcE-----E-----EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEE
Confidence 9999999999999999988654 2 344445544 8888888 688999999999999
Q ss_pred EcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccc
Q 003423 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQ 411 (821)
Q Consensus 333 wd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (821)
||+ .++.+..+..|.. .|.+++|+|++++|++++.||.|++||+.....
T Consensus 232 ~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----------------------------- 281 (425)
T 1r5m_A 232 YQITEKTPTGKLIGHHG-PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS----------------------------- 281 (425)
T ss_dssp EETTCSSCSEEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEECSSSBSC-----------------------------
T ss_pred EEcCCCceeeeeccCCC-ceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc-----------------------------
Confidence 999 6778888888888 699999999999999999999999999854210
Q ss_pred eeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEec
Q 003423 412 IRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGD 491 (821)
Q Consensus 412 ~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~ 491 (821)
...+..+...+.+++|+|++.+++ ++
T Consensus 282 ~~~~~~~~~~i~~~~~~~~~~l~~------------------------------------------------------~~ 307 (425)
T 1r5m_A 282 QNCFYGHSQSIVSASWVGDDKVIS------------------------------------------------------CS 307 (425)
T ss_dssp SEEECCCSSCEEEEEEETTTEEEE------------------------------------------------------EE
T ss_pred ceEecCCCccEEEEEECCCCEEEE------------------------------------------------------Ee
Confidence 011122344567777776653333 33
Q ss_pred CCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccc------cCCc
Q 003423 492 GKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCY------ESSK 565 (821)
Q Consensus 492 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~ 565 (821)
.+|.|++|++.+... ...+..+ ...+. ..+++|++++|++++.||.|++|++......... ....
T Consensus 308 ~d~~i~i~d~~~~~~----~~~~~~~---~~~i~--~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 378 (425)
T 1r5m_A 308 MDGSVRLWSLKQNTL----LALSIVD---GVPIF--AGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILN 378 (425)
T ss_dssp TTSEEEEEETTTTEE----EEEEECT---TCCEE--EEEECTTSSEEEEEETTSCEEEEECHHHHC--------------
T ss_pred CCCcEEEEECCCCcE----eEecccC---CccEE--EEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccC
Confidence 344555555433221 0111101 11111 1245677899999999999999999865310000 0001
Q ss_pred cceeeeeEEEecccCc--eEEEEEeecCCCEEEEEcCCCcEEEEecC
Q 003423 566 TNNVFLVAEFSSCFGA--RIMCLDASFEDEVLFCGDLRGNLVLFPLL 610 (821)
Q Consensus 566 ~~~~~~~~~~~~~h~~--~I~~l~~s~~~~~L~sgs~dG~i~iw~~~ 610 (821)
....++...+ ..|.. .|++++|+|++++|++|+.||.|++|+++
T Consensus 379 ~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 379 PLPIPLYASY-QSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CEECCEEEEE-CCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred cccchhhhhh-cCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 1112255665 66755 99999999999999999999999999975
No 37
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.5e-33 Score=288.77 Aligned_cols=280 Identities=15% Similarity=0.285 Sum_probs=234.9
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
|.++|++++|+ |+ +++|++|. |+.|++||..+++....+..+.. .|.+++|+|++ ..++++.
T Consensus 22 h~~~v~~~~~s--~~----~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~-~v~~~~~~~~~----------~~l~s~~ 84 (312)
T 4ery_A 22 HTKAVSSVKFS--PN----GEWLASSSADKLIKIWGAYDGKFEKTISGHKL-GISDVAWSSDS----------NLLVSAS 84 (312)
T ss_dssp CSSCEEEEEEC--TT----SSEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTS----------SEEEEEE
T ss_pred cCCcEEEEEEC--CC----CCEEEEeeCCCeEEEEeCCCcccchhhccCCC-ceEEEEEcCCC----------CEEEEEC
Confidence 78899999999 98 56777665 89999999999999888887655 79999999663 2556666
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEc
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 174 (821)
.|+.|++||+... +.+..+.+|.+.|.+++|+| ++++|++|+.|+.|++||+.+++.+..+.
T Consensus 85 ~d~~i~vwd~~~~---------------~~~~~~~~~~~~v~~~~~~~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 146 (312)
T 4ery_A 85 DDKTLKIWDVSSG---------------KCLKTLKGHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLP 146 (312)
T ss_dssp TTSEEEEEETTTC---------------CEEEEEECCSSCEEEEEECS---SSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred CCCEEEEEECCCC---------------cEEEEEcCCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEECCCCEEEEEec
Confidence 7899999998743 46778889999999999999 99999999999999999999999888887
Q ss_pred cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE-e
Q 003423 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-V 253 (821)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 253 (821)
.+.. .+.++.+ ++++.++++|+.||.|++||+. ..+.+..+ .
T Consensus 147 ~~~~-~v~~~~~---~~~~~~l~~~~~d~~i~~wd~~---------------------------------~~~~~~~~~~ 189 (312)
T 4ery_A 147 AHSD-PVSAVHF---NRDGSLIVSSSYDGLCRIWDTA---------------------------------SGQCLKTLID 189 (312)
T ss_dssp CCSS-CEEEEEE---CTTSSEEEEEETTSCEEEEETT---------------------------------TCCEEEEECC
T ss_pred CCCC-cEEEEEE---cCCCCEEEEEeCCCcEEEEECC---------------------------------CCceeeEEec
Confidence 6654 3566666 5788999999999999999998 44444444 4
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEE--EEc---CCEEEEEeCCC
Q 003423 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC--CLT---DSFIITAGEDC 328 (821)
Q Consensus 254 ~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v--~~~---~~~l~s~~~dg 328 (821)
.|...|..++|+|++++|++++.|+.|++||+.+++. . ..+.+|...+.++ .+. +.++++++.||
T Consensus 190 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg 259 (312)
T 4ery_A 190 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-----L-----KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259 (312)
T ss_dssp SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE-----E-----EEECSSCCSSSCCCEEEECSSSCEEEECCTTS
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-----E-----EEEEecCCceEEEEEEEEeCCCcEEEEECCCC
Confidence 5677899999999999999999999999999988754 2 4566676554332 232 57899999999
Q ss_pred eEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEe--CCCcEEEEEcC
Q 003423 329 TCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG--FDSAIKVHQFQ 378 (821)
Q Consensus 329 ~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~--~dg~I~iwd~~ 378 (821)
.|++||+ .++.+..+.+|.. .|.+++++|+++++++++ .|+.|++|+.+
T Consensus 260 ~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 260 LVYIWNLQTKEIVQKLQGHTD-VVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CEEEEETTTCCEEEEECCCSS-CEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEEECCCchhhhhhhccCC-cEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9999999 7788899999988 699999999999999997 69999999863
No 38
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.7e-33 Score=294.00 Aligned_cols=266 Identities=11% Similarity=0.109 Sum_probs=195.2
Q ss_pred eEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccce
Q 003423 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSL 124 (821)
Q Consensus 45 ~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~ 124 (821)
..+.|++....+. .++. .|.+++|+|++ .++++++++++++|+.......... .......
T Consensus 15 ~~r~w~~~~~~~~----~~~~-~v~~~~fs~dG-----------~~l~~~sd~~~r~Wd~~~~~~~~~~----~~~~~~~ 74 (344)
T 4gqb_B 15 AAREWNLPPNAPA----CMER-QLEAARYRSDG-----------ALLLGASSLSGRCWAGSLWLFKDPC----AAPNEGF 74 (344)
T ss_dssp --------CCSCS----SCCS-EEEEEEECTTS-----------CEEEEEECCSSSCCCEEEEEESSGG----GTTCGGG
T ss_pred cccccCCCCCCcc----cccC-CEEEEEECCCC-----------CEEEEEeCCceEEeeceeeeecccc----ccCCcce
Confidence 3567776554432 2233 58999999764 4677777888898875432100000 0000111
Q ss_pred eeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEc---cCcceeEEEEeeccCCccCeEEEEEee
Q 003423 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH---SPERCLLYSMKLWGDNLEALRIASGTI 201 (821)
Q Consensus 125 ~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (821)
......|...|.+++|+| ++ .|++|+.||+|+|||+.+++.+..+. ..+...+.+++| ++++.+|++|+.
T Consensus 75 ~~~~~~~~~~v~~~~~s~---d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~---spdg~~l~sgs~ 147 (344)
T 4gqb_B 75 CSAGVQTEAGVADLTWVG---ER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSV---LSSGTQAVSGSK 147 (344)
T ss_dssp CSEEEEESSCEEEEEEET---TT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEE---CTTSSEEEEEET
T ss_pred eeeeeccCCCEEEEEEeC---CC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEE---CCCCCEEEEEeC
Confidence 122234567899999998 75 68899999999999999987654432 233445788887 689999999999
Q ss_pred CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCC-EEEEEeCCCeE
Q 003423 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSA 280 (821)
Q Consensus 202 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~-~l~s~s~Dg~i 280 (821)
||.|++||+. +.+.+..+.+|.+.|.+++|+|++. +|++|+.|++|
T Consensus 148 d~~i~iwd~~---------------------------------~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v 194 (344)
T 4gqb_B 148 DICIKVWDLA---------------------------------QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRI 194 (344)
T ss_dssp TSCEEEEETT---------------------------------TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCE
T ss_pred CCeEEEEECC---------------------------------CCcEEEEEcCcCCceEEEEecCCCCCceeeecccccc
Confidence 9999999998 6788899999999999999999884 78999999999
Q ss_pred EEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC---CEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEE
Q 003423 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLY 356 (821)
Q Consensus 281 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~---~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~ 356 (821)
++||+++++. ...+ ....|...+.+++|++ .++++|+.||+|++||+ .++++.++.+|.. .|++++|
T Consensus 195 ~iwd~~~~~~-----~~~~---~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~f 265 (344)
T 4gqb_B 195 LLWDTRCPKP-----ASQI---GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQ-CVTGLVF 265 (344)
T ss_dssp EEEETTSSSC-----EEEC---C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSS-CEEEEEE
T ss_pred ccccccccce-----eeee---ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCC-CEEEEEE
Confidence 9999998765 3211 2345666789999983 68899999999999999 7889999999998 6999999
Q ss_pred ecCC-CEEEEEeCCCcEEEEEcCC
Q 003423 357 DSLS-SLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 357 ~~~~-~~l~tg~~dg~I~iwd~~~ 379 (821)
+|++ ++|++|+.|++|++||++.
T Consensus 266 sp~g~~~lasgs~D~~i~vwd~~~ 289 (344)
T 4gqb_B 266 SPHSVPFLASLSEDCSLAVLDSSL 289 (344)
T ss_dssp CSSSSCCEEEEETTSCEEEECTTC
T ss_pred ccCCCeEEEEEeCCCeEEEEECCC
Confidence 9998 5799999999999999854
No 39
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.1e-32 Score=288.70 Aligned_cols=296 Identities=13% Similarity=0.190 Sum_probs=230.8
Q ss_pred cceeeeccCCCCcEEEEEE-----eecCCCCCEEEEEECCCcEEEEEccCC-------ceeEEEccCcceeEEEEeeccC
Q 003423 122 LSLVQSLPRLSHWVFDVCF-----LKVCNGNRSLAIGCSDNSIRVWDISNS-------SIILEVHSPERCLLYSMKLWGD 189 (821)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~-----~~~~~~~~~l~t~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~~~s~~~~~~ 189 (821)
++....+.+|.++|++++| ++ +++++|++|+.|++|++||+.+. .....+.+|.. .+.++++
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~--~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~-~V~~~~~--- 84 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKEN--EDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNH-FVSDLAL--- 84 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTT--CCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSS-CEEEEEE---
T ss_pred eeeeeeeccchhhhhheeeEEEeecC--CCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCC-ceEEEEE---
Confidence 4567789999999999999 43 27889999999999999999754 23445555554 4667777
Q ss_pred CccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCC
Q 003423 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS 269 (821)
Q Consensus 190 s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~ 269 (821)
++++.++++|+.|+.|++||+. +.+.+..+.+|.+.|.+++|+|+++
T Consensus 85 ~~~~~~l~s~s~D~~v~lwd~~---------------------------------~~~~~~~~~~h~~~v~~v~~sp~~~ 131 (343)
T 2xzm_R 85 SQENCFAISSSWDKTLRLWDLR---------------------------------TGTTYKRFVGHQSEVYSVAFSPDNR 131 (343)
T ss_dssp CSSTTEEEEEETTSEEEEEETT---------------------------------SSCEEEEEECCCSCEEEEEECSSTT
T ss_pred CCCCCEEEEEcCCCcEEEEECC---------------------------------CCcEEEEEcCCCCcEEEEEECCCCC
Confidence 5789999999999999999998 6677888899999999999999999
Q ss_pred EEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC------------CEEEEEeCCCeEEEEcCCC
Q 003423 270 KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD------------SFIITAGEDCTCRVWGSDG 337 (821)
Q Consensus 270 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~------------~~l~s~~~dg~i~iwd~~~ 337 (821)
+|++++.|++|++||+..... ... ....+|...|.+++|++ .++++++.|++|++||..+
T Consensus 132 ~l~s~~~d~~i~~wd~~~~~~------~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 203 (343)
T 2xzm_R 132 QILSAGAEREIKLWNILGECK------FSS--AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF 203 (343)
T ss_dssp EEEEEETTSCEEEEESSSCEE------EEC--CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT
T ss_pred EEEEEcCCCEEEEEeccCCce------eee--ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC
Confidence 999999999999999974322 000 12237889999999984 5899999999999999888
Q ss_pred ceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCc-CCCcccCCccccccCCCcceEEeecCCcccceeccC
Q 003423 338 KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTD 416 (821)
Q Consensus 338 ~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (821)
+....+.+|.. .|.+++|+|++++|++|+.||.|++||+... .... . .
T Consensus 204 ~~~~~~~~h~~-~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~---------------~--------------~- 252 (343)
T 2xzm_R 204 QIRYTFKAHES-NVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR---------------E--------------F- 252 (343)
T ss_dssp EEEEEEECCSS-CEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSE---------------E--------------E-
T ss_pred ceeEEEcCccc-cceEEEECCCCCEEEEEcCCCeEEEEECCCCcccce---------------e--------------e-
Confidence 88888999988 6999999999999999999999999998431 1000 0 0
Q ss_pred CCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeee---------ccCCcceEEEeccCCCCCCCCCCCcEE
Q 003423 417 SKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQ---------VSEGMPIICMDLLSNEPKYPCGIDDWV 487 (821)
Q Consensus 417 ~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~~s~~~~~~l 487 (821)
.+...|.+++|+|++.+++++.++.+..+++..........+.. ..+...+.++++.+ ++.++
T Consensus 253 ~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--------~g~~l 324 (343)
T 2xzm_R 253 DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA--------LGKKL 324 (343)
T ss_dssp ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECS--------SSCCE
T ss_pred cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECC--------CCCeE
Confidence 01235999999999999988888887765554322211001110 02345677777755 45899
Q ss_pred EEecCCccEEEEEecC
Q 003423 488 ALGDGKGNMTIVRVVG 503 (821)
Q Consensus 488 ~~g~~~g~i~i~~~~~ 503 (821)
++|+.||.|++|++.+
T Consensus 325 ~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 325 FAGFTDGVIRTFSFET 340 (343)
T ss_dssp EEEETTSEEEEEEEEE
T ss_pred EEecCCceEEEEEEEc
Confidence 9999999999999764
No 40
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-32 Score=300.13 Aligned_cols=348 Identities=16% Similarity=0.161 Sum_probs=256.8
Q ss_pred Ccceeeccce-------eeeeeEEEEEeccCCCCCCcc-eEEeec-CCeEEEEEC----CCCe------eeeEEEee---
Q 003423 6 LSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLP-FLLAGS-GSQVLLYDL----EAGT------LIRPFQVF--- 63 (821)
Q Consensus 6 i~~w~~~~~~-------~~~~Vt~l~~~~~p~~~~~~~-~l~~g~-~~~i~iwd~----~t~~------~~~~~~~~--- 63 (821)
+.+|+..... |.++|++++|+ |+ ++ +|++|. |+.|++||+ .+++ ....+...
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 1r5m_A 27 DSSDDLDGFVKILKEIVKLDNIVSSTWN--PL----DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFAL 100 (425)
T ss_dssp -------CCCEECEEEEECSCCSEEEEC--SS----CTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCC
T ss_pred cccccchhhhhheeeeeccCceEEEEEC--CC----CCcEEEEecCCceEEEEEEecccCCccccccccccccccccccc
Confidence 4566655543 55899999999 98 55 777766 799999999 8888 45555431
Q ss_pred ------ccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEE
Q 003423 64 ------HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFD 137 (821)
Q Consensus 64 ------~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 137 (821)
+...|.+++|+|++ ..++++..++.|++|+.. .+....+.+|...|.+
T Consensus 101 ~~~~~~~~~~v~~~~~s~~~----------~~l~~~~~dg~i~i~~~~----------------~~~~~~~~~~~~~v~~ 154 (425)
T 1r5m_A 101 SASSGKTTNQVTCLAWSHDG----------NSIVTGVENGELRLWNKT----------------GALLNVLNFHRAPIVS 154 (425)
T ss_dssp C------CBCEEEEEECTTS----------SEEEEEETTSCEEEEETT----------------SCEEEEECCCCSCEEE
T ss_pred cccccCCCCceEEEEEcCCC----------CEEEEEeCCCeEEEEeCC----------------CCeeeeccCCCccEEE
Confidence 23479999999763 255666678999999922 3567788899999999
Q ss_pred EEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCccee--------------EEEEeeccCCccCeEEEEEeeCC
Q 003423 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL--------------LYSMKLWGDNLEALRIASGTIYN 203 (821)
Q Consensus 138 ~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~--------------~~s~~~~~~s~~~~~l~sg~~dg 203 (821)
++|+| ++++|++++.|+.|++||+.+++.+..+..+.... +.++.+ +++ ..+++++.+|
T Consensus 155 ~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~g 227 (425)
T 1r5m_A 155 VKWNK---DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEW---VDD-DKFVIPGPKG 227 (425)
T ss_dssp EEECT---TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEE---EET-TEEEEECGGG
T ss_pred EEECC---CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEE---cCC-CEEEEEcCCC
Confidence 99999 99999999999999999999998888776544320 333444 233 4688999999
Q ss_pred EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 003423 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283 (821)
Q Consensus 204 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iw 283 (821)
.|++||+. ....+..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 228 ~i~~~d~~---------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 274 (425)
T 1r5m_A 228 AIFVYQIT---------------------------------EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274 (425)
T ss_dssp CEEEEETT---------------------------------CSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred eEEEEEcC---------------------------------CCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 99999998 455667778999999999999999999999999999999
Q ss_pred ecccCcccCCCCceeeeceEEeccceeEEEEEEcC-CEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCC
Q 003423 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS 361 (821)
Q Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~ 361 (821)
|+.+++. . ..+.+|...|.+++|++ .++++++.|+.|++||+ .++.+..+..|.. .|.+++|+|+++
T Consensus 275 d~~~~~~-----~-----~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~s~~~~ 343 (425)
T 1r5m_A 275 HGGNGNS-----Q-----NCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGV-PIFAGRISQDGQ 343 (425)
T ss_dssp CSSSBSC-----S-----EEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTC-CEEEEEECTTSS
T ss_pred ECCCCcc-----c-----eEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCc-cEEEEEEcCCCC
Confidence 9998765 3 46778999999999984 49999999999999999 7888888988887 699999999999
Q ss_pred EEEEEeCCCcEEEEEcCCcC--CCcccCCccccccCCCcceEEeecCCcccceeccCCCCc--ceEEEEeecCCeEE-EE
Q 003423 362 LLVTAGFDSAIKVHQFQAFL--PGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSE--YVRCLHLTSEDTLY-IA 436 (821)
Q Consensus 362 ~l~tg~~dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~l~f~~~~~~l-~~ 436 (821)
+|++++.||.|++||+.... ...+.+.. ..++. +........+..+.. .|.+++|+|++.++ ++
T Consensus 344 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~--------~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 412 (425)
T 1r5m_A 344 KYAVAFMDGQVNVYDLKKLNSKSRSLYGNR--------DGILN---PLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVA 412 (425)
T ss_dssp EEEEEETTSCEEEEECHHHHC-------------------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEE
T ss_pred EEEEEECCCeEEEEECCCCccceeeeeccc--------ccccC---cccchhhhhhcCcccCCceEEEEccCCCceEEEE
Confidence 99999999999999995421 11111110 00000 011122334455544 89999999998766 55
Q ss_pred ecCCcEEEEEe
Q 003423 437 TNHGYLYHTKL 447 (821)
Q Consensus 437 ~~~g~~~~~~i 447 (821)
+.+|.+..+++
T Consensus 413 ~~dg~i~iw~~ 423 (425)
T 1r5m_A 413 YSLQEGSVVAI 423 (425)
T ss_dssp ESSSCCEEEEC
T ss_pred ecCceEEEEee
Confidence 66777765543
No 41
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-32 Score=286.35 Aligned_cols=311 Identities=19% Similarity=0.289 Sum_probs=226.8
Q ss_pred cceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCC--ceeEEE-ccCcceeEEEEeeccCCccCeEEEE
Q 003423 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS--SIILEV-HSPERCLLYSMKLWGDNLEALRIAS 198 (821)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~--~~~~~~-~~~~~~~~~s~~~~~~s~~~~~l~s 198 (821)
++.+..+.+|.++|++++|+| + +||+|+.|++|++||+.++ ..+..+ ...+...+.+++| +|++.+|++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~---~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~---sp~~~~las 75 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQ---G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAW---RPHTSLLAA 75 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEET---T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEE---CTTSSEEEE
T ss_pred cccceeeccCCCceeeeccCC---C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEE---CCCCCEEEE
Confidence 456788999999999999998 6 9999999999999999875 344555 3325556788888 678999999
Q ss_pred EeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCC
Q 003423 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278 (821)
Q Consensus 199 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg 278 (821)
|+.|+.|++|+...... .......+..+.+|.+.|.+++|+|++++|++|+.|+
T Consensus 76 ~s~D~~v~iw~~~~~~~--------------------------~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~ 129 (330)
T 2hes_X 76 GSFDSTVSIWAKEESAD--------------------------RTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDK 129 (330)
T ss_dssp EETTSCEEEEEC---------------------------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTS
T ss_pred EeCCCcEEEEEcccCcC--------------------------ccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 99999999999861100 0013356778899999999999999999999999999
Q ss_pred eEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CC--ceeeEeecccCCCeEE
Q 003423 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DG--KQLKMIKEHIGRGIWR 353 (821)
Q Consensus 279 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~--~~~~~~~~h~~~~i~~ 353 (821)
+|++||+..... ..+.+ ..+.+|...|.+++|+ +.+|++++.|++|++||. .+ +++..+.+|.+ .|++
T Consensus 130 ~v~iwd~~~~~~----~~~~~--~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~-~v~~ 202 (330)
T 2hes_X 130 SVWIWETDESGE----EYECI--SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG-TVWS 202 (330)
T ss_dssp CEEEEECCTTCC----CCEEE--EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEE
T ss_pred EEEEEeccCCCC----CeEEE--EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCC-cEEE
Confidence 999999954321 02222 4778999999999998 479999999999999998 44 57888999998 6999
Q ss_pred EEEecC--CCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceecc-CCCCcceEEEEeecC
Q 003423 354 CLYDSL--SSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLT-DSKSEYVRCLHLTSE 430 (821)
Q Consensus 354 l~~~~~--~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~f~~~ 430 (821)
++|+|+ +.+|++|+.|+.|++||+....... ...+ .....+ ..|...|.+++|+++
T Consensus 203 ~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~-------------~~~~--------~~~~~~~~~h~~~v~~v~~s~~ 261 (330)
T 2hes_X 203 SDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDD-------------QQEW--------VCEAILPDVHKRQVYNVAWGFN 261 (330)
T ss_dssp EEECCSSSSCEEEEEETTSCEEEEEEEEECTTS-------------CEEE--------EEEEECCSCCSSCEEEEEECTT
T ss_pred EEecCCCCeeEEEEEeCCCeEEEEEecCCCccc-------------ccee--------EEeeecccccccceEEEEEcCC
Confidence 999998 6789999999999999985421000 0000 001111 236678999999988
Q ss_pred CeEEEEecCCcEEEEEecCCCcceeeEeee--ccCCc-ceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecC
Q 003423 431 DTLYIATNHGYLYHTKLCDMDSVNWNKILQ--VSEGM-PIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVG 503 (821)
Q Consensus 431 ~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~--~~~~~-~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~ 503 (821)
+.++.++.+|.+..++. ....|..+.. ..+.. .+.++.+.+. .++.+|++|+.||.|++|++..
T Consensus 262 ~~l~s~~~dg~v~iw~~---~~~~~~~~~~~~~~h~~~~v~~v~~~~~------~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 262 GLIASVGADGVLAVYEE---VDGEWKVFAKRALCHGVYEINVVKWLEL------NGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp SCEEEEETTSCEEEEEE---ETTEEEEEEEESCTTTTSCEEEEEEC-----------CCEEEEETTSEEEEEEC--
T ss_pred CEEEEEeCCCEEEEEEc---CCCceEEEeccccccccceEEEEEEecC------CCceEEEEecCCCcEEEEEecc
Confidence 88888888888875544 3333333222 12233 6778777552 1457899999999999999754
No 42
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.9e-32 Score=288.99 Aligned_cols=282 Identities=14% Similarity=0.207 Sum_probs=219.1
Q ss_pred eeeeeEEEEE-----eccC-CCCCCcceEEeec-CCeEEEEECCCC-------eeeeEEEeeccccEEeEEeccccCCCC
Q 003423 16 YLGEISALCF-----VHLP-SHLSSLPFLLAGS-GSQVLLYDLEAG-------TLIRPFQVFHGIRLHGISCNFINCTEG 81 (821)
Q Consensus 16 ~~~~Vt~l~~-----~~~p-~~~~~~~~l~~g~-~~~i~iwd~~t~-------~~~~~~~~~~~~~i~~i~~~~~~~~~~ 81 (821)
|.++|++++| + | + +.+|++|+ |+.|+|||+.++ .+...+..|.. .|.+++|+|++
T Consensus 20 H~~~V~~~~~~~s~~~--~~d----~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~-~V~~~~~~~~~---- 88 (343)
T 2xzm_R 20 HSDWVTSIVAGFSQKE--NED----SPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNH-FVSDLALSQEN---- 88 (343)
T ss_dssp CSSCEEEEEECCCSST--TCC----CCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSS-CEEEEEECSST----
T ss_pred chhhhhheeeEEEeec--CCC----CCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCC-ceEEEEECCCC----
Confidence 7889999999 5 5 5 66777766 899999999753 45566666554 79999999663
Q ss_pred CCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEE
Q 003423 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161 (821)
Q Consensus 82 ~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~i 161 (821)
..++.++.|+.|++||+..+ +.+..+.+|.+.|++++|+| ++++|++|+.|++|++
T Consensus 89 ------~~l~s~s~D~~v~lwd~~~~---------------~~~~~~~~h~~~v~~v~~sp---~~~~l~s~~~d~~i~~ 144 (343)
T 2xzm_R 89 ------CFAISSSWDKTLRLWDLRTG---------------TTYKRFVGHQSEVYSVAFSP---DNRQILSAGAEREIKL 144 (343)
T ss_dssp ------TEEEEEETTSEEEEEETTSS---------------CEEEEEECCCSCEEEEEECS---STTEEEEEETTSCEEE
T ss_pred ------CEEEEEcCCCcEEEEECCCC---------------cEEEEEcCCCCcEEEEEECC---CCCEEEEEcCCCEEEE
Confidence 24556667999999998753 46778889999999999999 9999999999999999
Q ss_pred EEccCCceeEEEc--cCcceeEEEEeeccCC-------ccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCC
Q 003423 162 WDISNSSIILEVH--SPERCLLYSMKLWGDN-------LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (821)
Q Consensus 162 wd~~~~~~~~~~~--~~~~~~~~s~~~~~~s-------~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 232 (821)
||+.... ..... ..+...+.++.|.+.. +.+.++++|+.||.|++||..
T Consensus 145 wd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--------------------- 202 (343)
T 2xzm_R 145 WNILGEC-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--------------------- 202 (343)
T ss_dssp EESSSCE-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT---------------------
T ss_pred EeccCCc-eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC---------------------
Confidence 9997433 32222 1233456677764321 223789999999999999954
Q ss_pred CcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEE
Q 003423 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (821)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 312 (821)
......+.+|.+.|.+++|+|++++|++|+.|++|++||+..... . .....+...|.
T Consensus 203 -------------~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~-----~-----~~~~~~~~~v~ 259 (343)
T 2xzm_R 203 -------------FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY-----P-----QREFDAGSTIN 259 (343)
T ss_dssp -------------TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS-----C-----SEEEECSSCEE
T ss_pred -------------CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc-----c-----ceeecCCCcEE
Confidence 345667889999999999999999999999999999999954332 1 23334566799
Q ss_pred EEEEcC-CEEEEEeCCCeEEEEcC-CCceee--Eee-----------cccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 313 DCCLTD-SFIITAGEDCTCRVWGS-DGKQLK--MIK-----------EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 313 ~v~~~~-~~l~s~~~dg~i~iwd~-~~~~~~--~~~-----------~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
+++|++ ..+++++.|+.+++|++ .++... .+. +|.. .|++++|+|++++|++|+.||.|++|++
T Consensus 260 ~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~sg~~Dg~v~~w~~ 338 (343)
T 2xzm_R 260 QIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNP-QCTSLAWNALGKKLFAGFTDGVIRTFSF 338 (343)
T ss_dssp EEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCC-CEEEEEECSSSCCEEEEETTSEEEEEEE
T ss_pred EEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCC-ceEEEEECCCCCeEEEecCCceEEEEEE
Confidence 999994 45566778999999998 443322 333 5666 5999999999999999999999999998
Q ss_pred C
Q 003423 378 Q 378 (821)
Q Consensus 378 ~ 378 (821)
+
T Consensus 339 ~ 339 (343)
T 2xzm_R 339 E 339 (343)
T ss_dssp E
T ss_pred E
Confidence 4
No 43
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.7e-31 Score=281.83 Aligned_cols=284 Identities=14% Similarity=0.216 Sum_probs=227.4
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCe-----eeeEEEeeccccEEeEEeccccCCCCCCccceee
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT-----LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~-----~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~ 89 (821)
|.++|++|+|+ |+ .+.+|++|+ |++|+|||+.+++ +...++.|.. .|.++.|+|++ ..
T Consensus 37 H~~~V~~v~~s--p~---~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~-~V~~~~~s~dg----------~~ 100 (340)
T 4aow_A 37 HNGWVTQIATT--PQ---FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH-FVSDVVISSDG----------QF 100 (340)
T ss_dssp CSSCEEEEEEC--TT---CTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSS-CEEEEEECTTS----------SE
T ss_pred ccCCEEEEEEe--CC---CCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCC-CEEEEEECCCC----------CE
Confidence 88999999999 97 456887765 8999999997654 4455555444 79999999663 25
Q ss_pred EEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce
Q 003423 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (821)
Q Consensus 90 ~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~ 169 (821)
++++..|+.|++|+.... ........+...+..+.+++ ++++|++|+.|+.+++||+.....
T Consensus 101 l~s~~~d~~i~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~---~~~~l~s~s~d~~~~~~d~~~~~~ 162 (340)
T 4aow_A 101 ALSGSWDGTLRLWDLTTG---------------TTTRRFVGHTKDVLSVAFSS---DNRQIVSGSRDKTIKLWNTLGVCK 162 (340)
T ss_dssp EEEEETTSEEEEEETTTT---------------EEEEEEECCSSCEEEEEECT---TSSCEEEEETTSCEEEECTTSCEE
T ss_pred EEEEcccccceEEeeccc---------------ceeeeecCCCCceeEEEEee---cCccceeecCCCeEEEEEeCCCce
Confidence 666667999999997743 34556667788899999999 999999999999999999887665
Q ss_pred eEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeE
Q 003423 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (821)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (821)
.......+...+..+.+... ....++++++.|+.|++||+. ..+.+
T Consensus 163 ~~~~~~~~~~~v~~~~~~~~-~~~~~~~s~~~d~~i~i~d~~---------------------------------~~~~~ 208 (340)
T 4aow_A 163 YTVQDESHSEWVSCVRFSPN-SSNPIIVSCGWDKLVKVWNLA---------------------------------NCKLK 208 (340)
T ss_dssp EEECSSSCSSCEEEEEECSC-SSSCEEEEEETTSCEEEEETT---------------------------------TTEEE
T ss_pred EEEEeccccCcccceEEccC-CCCcEEEEEcCCCEEEEEECC---------------------------------CCcee
Confidence 44433333444555665432 456788999999999999998 66778
Q ss_pred EEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc-CCEEEEEeCCC
Q 003423 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDC 328 (821)
Q Consensus 250 ~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~l~s~~~dg 328 (821)
..+.+|.+.|.+++|+|++++|++|+.|++|++||+.+.+. . ....+...|.+++|+ +..+++++.|+
T Consensus 209 ~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~-----~------~~~~~~~~v~~~~~~~~~~~~~~~~d~ 277 (340)
T 4aow_A 209 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH-----L------YTLDGGDIINALCFSPNRYWLCAATGP 277 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE-----E------EEEECSSCEEEEEECSSSSEEEEEETT
T ss_pred eEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCce-----e------eeecCCceEEeeecCCCCceeeccCCC
Confidence 88899999999999999999999999999999999998755 2 334455689999998 57888999999
Q ss_pred eEEEEcCC-CceeeEe---------ecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 329 TCRVWGSD-GKQLKMI---------KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 329 ~i~iwd~~-~~~~~~~---------~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
.|++||++ +..+..+ ..|.. .|++++|+|++++|++|+.||.|++||+++
T Consensus 278 ~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 278 SIKIWDLEGKIIVDELKQEVISTSSKAEPP-QCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp EEEEEETTTTEEEEEECCC-------CCCC-CEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred EEEEEECCCCeEEEeccccceeeeccCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 99999994 4444333 35666 699999999999999999999999999853
No 44
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.1e-31 Score=289.99 Aligned_cols=324 Identities=19% Similarity=0.307 Sum_probs=252.5
Q ss_pred ceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeC
Q 003423 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (821)
Q Consensus 123 ~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d 202 (821)
+....+.+|.+.|.. ++.+ ++++|++|+.||.|++||+.+++.+..+..|... ++++.+ ++.++++|+.|
T Consensus 109 ~~~~~l~~h~~~v~~-~~~~---~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~-v~~~~~-----~~~~l~s~~~d 178 (445)
T 2ovr_B 109 KSPKVLKGHDDHVIT-CLQF---CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG-VWSSQM-----RDNIIISGSTD 178 (445)
T ss_dssp CCCEEEECSTTSCEE-EEEE---ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSC-EEEEEE-----ETTEEEEEETT
T ss_pred ceeEEecccCCCcEE-EEEE---cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCC-EEEEEe-----cCCEEEEEeCC
Confidence 345678899987543 3566 7889999999999999999999999888877654 567766 35699999999
Q ss_pred CEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 003423 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARI 282 (821)
Q Consensus 203 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~i 282 (821)
|.|++||+. ..+.+..+.+|...|.+++|+ ++.|++|+.||+|++
T Consensus 179 g~i~vwd~~---------------------------------~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~ 223 (445)
T 2ovr_B 179 RTLKVWNAE---------------------------------TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRV 223 (445)
T ss_dssp SCEEEEETT---------------------------------TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEE
T ss_pred CeEEEEECC---------------------------------cCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEE
Confidence 999999998 667788899999999999995 568999999999999
Q ss_pred EecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCC
Q 003423 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS 361 (821)
Q Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~ 361 (821)
||+.+++. . ..+.+|...|.++.+.+.++++++.||.|++||+ .++.+..+.+|.. .|.++++ ++.
T Consensus 224 wd~~~~~~-----~-----~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~--~~~ 290 (445)
T 2ovr_B 224 WDIETGQC-----L-----HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN-RVYSLQF--DGI 290 (445)
T ss_dssp EESSSCCE-----E-----EEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSS-CEEEEEE--CSS
T ss_pred EECCCCcE-----E-----EEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCC-ceEEEEE--CCC
Confidence 99998755 3 5778999999999999999999999999999999 7888899999988 6999998 789
Q ss_pred EEEEEeCCCcEEEEEcCCc-CCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCC
Q 003423 362 LLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG 440 (821)
Q Consensus 362 ~l~tg~~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g 440 (821)
++++|+.||.|++||++.. .+.+ +..+..
T Consensus 291 ~l~~~~~d~~i~i~d~~~~~~~~~------------------------------~~~~~~-------------------- 320 (445)
T 2ovr_B 291 HVVSGSLDTSIRVWDVETGNCIHT------------------------------LTGHQS-------------------- 320 (445)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEE------------------------------ECCCCS--------------------
T ss_pred EEEEEeCCCeEEEEECCCCCEEEE------------------------------EcCCcc--------------------
Confidence 9999999999999998531 0000 000111
Q ss_pred cEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCc
Q 003423 441 YLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGI 520 (821)
Q Consensus 441 ~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~ 520 (821)
.+.++.. +++++++|+.||.|++|++.++.. ...+......
T Consensus 321 -------------------------~v~~~~~----------~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~ 361 (445)
T 2ovr_B 321 -------------------------LTSGMEL----------KDNILVSGNADSTVKIWDIKTGQC----LQTLQGPNKH 361 (445)
T ss_dssp -------------------------CEEEEEE----------ETTEEEEEETTSCEEEEETTTCCE----EEEECSTTSC
T ss_pred -------------------------cEEEEEE----------eCCEEEEEeCCCeEEEEECCCCcE----EEEEccCCCC
Confidence 1111111 236788888899999999865432 1122111112
Q ss_pred cceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEE----ecccCceEEEEEeecCCCEEE
Q 003423 521 ERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEF----SSCFGARIMCLDASFEDEVLF 596 (821)
Q Consensus 521 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~h~~~I~~l~~s~~~~~L~ 596 (821)
...+..+. .+++++++++.||.|++||+..+ ++...+ ...|...|++++|+|++.+|+
T Consensus 362 ~~~v~~~~----~~~~~l~s~~~dg~v~iwd~~~~--------------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la 423 (445)
T 2ovr_B 362 QSAVTCLQ----FNKNFVITSSDDGTVKLWDLKTG--------------EFIRNLVTLESGGSGGVVWRIRASNTKLVCA 423 (445)
T ss_dssp SSCEEEEE----ECSSEEEEEETTSEEEEEETTTC--------------CEEEEEEECTTGGGTCEEEEEEECSSEEEEE
T ss_pred CCCEEEEE----ECCCEEEEEeCCCeEEEEECCCC--------------ceeeeeeccccCCCCceEEEEEecCCEEEEE
Confidence 22233222 34689999999999999999876 333332 147889999999999999999
Q ss_pred EEcCCCc----EEEEecCc
Q 003423 597 CGDLRGN----LVLFPLLR 611 (821)
Q Consensus 597 sgs~dG~----i~iw~~~~ 611 (821)
+|+.||+ |.+||++.
T Consensus 424 ~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 424 VGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EECSSSSSCCEEEEEECCC
T ss_pred EcccCCCCccEEEEEECCC
Confidence 9999998 99999874
No 45
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.7e-31 Score=278.77 Aligned_cols=323 Identities=13% Similarity=0.143 Sum_probs=250.4
Q ss_pred eeeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEE
Q 003423 15 QYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (821)
Q Consensus 15 ~~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~ 93 (821)
.+.++|.+++|+ || +++++++. ++.+.+|+............ +...|.+++|+|++ .++++
T Consensus 7 ~~~~~v~~~~~s--~d----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~-----------~~l~~ 68 (337)
T 1gxr_A 7 MGSKPAYSFHVT--AD----GQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTISNPT-----------RHVYT 68 (337)
T ss_dssp EEEEECCEEEEC--SS----SCEEECCCCTTSSSSTTCCSEEEEEEEEC-CSSCCCEEEECSSS-----------SEEEE
T ss_pred ccCCceeEEEEC--CC----CCEEEeecCCCcEeccccCCccccceecc-CCCceEEEEEecCC-----------cEEEE
Confidence 356789999999 99 67776665 55566665544333333333 44579999999663 47777
Q ss_pred EcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc--eeE
Q 003423 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS--IIL 171 (821)
Q Consensus 94 ~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~--~~~ 171 (821)
++++.|++|++....... ........+|...|.+++|+| ++++|++++.|+.|++||+.+++ ...
T Consensus 69 ~~dg~i~iw~~~~~~~~~----------~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 135 (337)
T 1gxr_A 69 GGKGCVKVWDISHPGNKS----------PVSQLDCLNRDNYIRSCKLLP---DGCTLIVGGEASTLSIWDLAAPTPRIKA 135 (337)
T ss_dssp ECBSEEEEEETTSTTCCS----------CSEEEECSCTTSBEEEEEECT---TSSEEEEEESSSEEEEEECCCC--EEEE
T ss_pred cCCCeEEEEECCCCCcee----------eeecccccCCCCcEEEEEEcC---CCCEEEEEcCCCcEEEEECCCCCcceee
Confidence 779999999997543110 111222337899999999999 99999999999999999999877 344
Q ss_pred EEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEE
Q 003423 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (821)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (821)
.+..+.. .+.++.+ ++++.++++++.||.|++||+. ..+.+..
T Consensus 136 ~~~~~~~-~i~~~~~---~~~~~~l~~~~~dg~v~~~d~~---------------------------------~~~~~~~ 178 (337)
T 1gxr_A 136 ELTSSAP-ACYALAI---SPDSKVCFSCCSDGNIAVWDLH---------------------------------NQTLVRQ 178 (337)
T ss_dssp EEECSSS-CEEEEEE---CTTSSEEEEEETTSCEEEEETT---------------------------------TTEEEEE
T ss_pred ecccCCC-ceEEEEE---CCCCCEEEEEeCCCcEEEEeCC---------------------------------CCceeee
Confidence 4544433 4566666 5788999999999999999998 5677888
Q ss_pred EecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCe
Q 003423 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCT 329 (821)
Q Consensus 252 ~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~ 329 (821)
+.+|.+.|.+++|+|++++|++++.|+.|++||+++++. .....|...+.+++|+ +.++++++.|+.
T Consensus 179 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-----------~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 247 (337)
T 1gxr_A 179 FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ-----------LQQHDFTSQIFSLGYCPTGEWLAVGMESSN 247 (337)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----------EEEEECSSCEEEEEECTTSSEEEEEETTSC
T ss_pred eecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce-----------EeeecCCCceEEEEECCCCCEEEEEcCCCc
Confidence 889999999999999999999999999999999998765 3445678899999998 579999999999
Q ss_pred EEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcc
Q 003423 330 CRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFS 409 (821)
Q Consensus 330 i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (821)
+++||+.......+..|.. .|.+++|+|++++|++++.||.|++|++..... ..
T Consensus 248 i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~-----------------~~-------- 301 (337)
T 1gxr_A 248 VEVLHVNKPDKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS-----------------IF-------- 301 (337)
T ss_dssp EEEEETTSSCEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----------------EE--------
T ss_pred EEEEECCCCCeEEEcCCcc-ceeEEEECCCCCEEEEecCCCcEEEEECCCCeE-----------------EE--------
Confidence 9999996555667888887 699999999999999999999999999854211 00
Q ss_pred cceeccCCCCcceEEEEeecCCeEEE-EecCCcEEEEEe
Q 003423 410 EQIRLTDSKSEYVRCLHLTSEDTLYI-ATNHGYLYHTKL 447 (821)
Q Consensus 410 ~~~~~~~~~~~~i~~l~f~~~~~~l~-~~~~g~~~~~~i 447 (821)
...+...+.+++|+|++.+++ ++.+|.+..+++
T Consensus 302 -----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 302 -----QSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp -----EEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred -----EecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 012345699999999986655 456777765543
No 46
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.5e-31 Score=276.91 Aligned_cols=279 Identities=13% Similarity=0.187 Sum_probs=233.9
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEe----eccccEEeEEeccccCCCCCCccceeeEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQV----FHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~----~~~~~i~~i~~~~~~~~~~~~~~~~~~~l 91 (821)
|..+|++++|+ |+ +++|+++.++.|++||+.+++....+.. .+...|.++.|+|++ ..++
T Consensus 50 h~~~v~~~~~~--~~----~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~ 113 (337)
T 1gxr_A 50 HGEVVCAVTIS--NP----TRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG----------CTLI 113 (337)
T ss_dssp CSSCCCEEEEC--SS----SSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS----------SEEE
T ss_pred CCCceEEEEEe--cC----CcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC----------CEEE
Confidence 77899999999 98 7788888899999999998764333322 244579999999763 2455
Q ss_pred EEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeE
Q 003423 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL 171 (821)
Q Consensus 92 ~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~ 171 (821)
++..++.|++|++.... ......+.+|...|.+++|+| ++++|++++.|+.|++||+.+++.+.
T Consensus 114 ~~~~d~~i~~~d~~~~~-------------~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~v~~~d~~~~~~~~ 177 (337)
T 1gxr_A 114 VGGEASTLSIWDLAAPT-------------PRIKAELTSSAPACYALAISP---DSKVCFSCCSDGNIAVWDLHNQTLVR 177 (337)
T ss_dssp EEESSSEEEEEECCCC---------------EEEEEEECSSSCEEEEEECT---TSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEcCCCcEEEEECCCCC-------------cceeeecccCCCceEEEEECC---CCCEEEEEeCCCcEEEEeCCCCceee
Confidence 66678999999997542 345677888999999999999 99999999999999999999999888
Q ss_pred EEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEE
Q 003423 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (821)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (821)
.+..+.. .+.++.+ ++++.++++++.||.|++||+. ..+.+..
T Consensus 178 ~~~~~~~-~i~~~~~---~~~~~~l~~~~~dg~i~~~d~~---------------------------------~~~~~~~ 220 (337)
T 1gxr_A 178 QFQGHTD-GASCIDI---SNDGTKLWTGGLDNTVRSWDLR---------------------------------EGRQLQQ 220 (337)
T ss_dssp EECCCSS-CEEEEEE---CTTSSEEEEEETTSEEEEEETT---------------------------------TTEEEEE
T ss_pred eeecccC-ceEEEEE---CCCCCEEEEEecCCcEEEEECC---------------------------------CCceEee
Confidence 8876554 3566766 5788999999999999999998 4455555
Q ss_pred EecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCe
Q 003423 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCT 329 (821)
Q Consensus 252 ~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~ 329 (821)
+ .|...|.+++|+|++++|++++.|+.|++||+.+.+. ..+..|...|.+++|+ +.+|++++.||.
T Consensus 221 ~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 288 (337)
T 1gxr_A 221 H-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-----------YQLHLHESCVLSLKFAYCGKWFVSTGKDNL 288 (337)
T ss_dssp E-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-----------EEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred e-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-----------EEEcCCccceeEEEECCCCCEEEEecCCCc
Confidence 4 4888999999999999999999999999999998765 5778899999999998 589999999999
Q ss_pred EEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 330 CRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 330 i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
+++|++ .++.+.. ..|.. .|.+++|+|++++|++++.||.|++|++
T Consensus 289 i~~~~~~~~~~~~~-~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 289 LNAWRTPYGASIFQ-SKESS-SVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEETTTCCEEEE-EECSS-CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEEECCCCeEEEE-ecCCC-cEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 999999 5555533 44666 6999999999999999999999999997
No 47
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1e-30 Score=288.72 Aligned_cols=331 Identities=17% Similarity=0.227 Sum_probs=248.0
Q ss_pred eeeeccCCCCcE-EEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeC
Q 003423 124 LVQSLPRLSHWV-FDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (821)
Q Consensus 124 ~~~~~~~h~~~I-~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d 202 (821)
....+.+|.+.+ .++.+ ++++|++|+.||+|++||+.+++.+..+.+|.. .+.++.+ ++++ ++++|+.|
T Consensus 113 ~~~~l~~h~~~v~~~~~~-----~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~-~V~~l~~---~~~~-~l~s~s~d 182 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF-----EDNYVITGADDKMIRVYDSINKKFLLQLSGHDG-GVWALKY---AHGG-ILVSGSTD 182 (464)
T ss_dssp EEEEEECCSSSCEEEEEE-----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEE---CSTT-EEEEEETT
T ss_pred ceEEEcCCCCCcEEEEEE-----CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCc-CEEEEEE---cCCC-EEEEEeCC
Confidence 456788998875 55544 557999999999999999999999998887665 4677777 3455 89999999
Q ss_pred CEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEc--CCCCEEEEEeCCCeE
Q 003423 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS--SCGSKLVSVSDDRSA 280 (821)
Q Consensus 203 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s--~~~~~l~s~s~Dg~i 280 (821)
|.|++||+. +...+..+.+|.+.|.+++|+ +++++|++++.|++|
T Consensus 183 g~i~vwd~~---------------------------------~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i 229 (464)
T 3v7d_B 183 RTVRVWDIK---------------------------------KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 229 (464)
T ss_dssp SCEEEEETT---------------------------------TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCE
T ss_pred CCEEEEECC---------------------------------CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcE
Confidence 999999998 667788899999999999998 577899999999999
Q ss_pred EEEecccCcccCCCCc-------------eeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEcC-CCceeeEeecc
Q 003423 281 RIWEVRAEYWKDSDSI-------------EEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEH 346 (821)
Q Consensus 281 ~iwd~~~~~~~~~~~~-------------~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h 346 (821)
++||+.+......... .......+.+|...|.++...++++++++.|+.|++||+ +++++..+.+|
T Consensus 230 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~ 309 (464)
T 3v7d_B 230 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH 309 (464)
T ss_dssp EEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred EEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence 9999987653100000 000014678899999999888999999999999999999 78889999999
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCc-CCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEE
Q 003423 347 IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCL 425 (821)
Q Consensus 347 ~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 425 (821)
.. .|.+++|+|+++++++|+.||.|++||++.. .+. .+..|...|.
T Consensus 310 ~~-~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~------------------------------~~~~h~~~v~-- 356 (464)
T 3v7d_B 310 TD-RIYSTIYDHERKRCISASMDTTIRIWDLENGELMY------------------------------TLQGHTALVG-- 356 (464)
T ss_dssp SS-CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE------------------------------EECCCSSCEE--
T ss_pred CC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE------------------------------EEeCCCCcEE--
Confidence 88 6999999999999999999999999998531 000 0111122222
Q ss_pred EeecCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCC
Q 003423 426 HLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDV 505 (821)
Q Consensus 426 ~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~ 505 (821)
++.+ .+.++++++.||.|++|++.+..
T Consensus 357 -------------------------------------------~~~~----------~~~~l~s~s~dg~v~vwd~~~~~ 383 (464)
T 3v7d_B 357 -------------------------------------------LLRL----------SDKFLVSAAADGSIRGWDANDYS 383 (464)
T ss_dssp -------------------------------------------EEEE----------CSSEEEEEETTSEEEEEETTTCC
T ss_pred -------------------------------------------EEEE----------cCCEEEEEeCCCcEEEEECCCCc
Confidence 2222 12577788888888888876543
Q ss_pred CCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEE
Q 003423 506 HTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMC 585 (821)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 585 (821)
. ......... ....+++++++++++++ ||.|++||+..+ +++..+...|...|++
T Consensus 384 ~------~~~~~~~~~----~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g--------------~~~~~~~~~~~~~v~~ 438 (464)
T 3v7d_B 384 R------KFSYHHTNL----SAITTFYVSDNILVSGS-ENQFNIYNLRSG--------------KLVHANILKDADQIWS 438 (464)
T ss_dssp E------EEEEECTTC----CCEEEEEECSSEEEEEE-TTEEEEEETTTC--------------CEEESCTTTTCSEEEE
T ss_pred e------eeeecCCCC----ccEEEEEeCCCEEEEec-CCeEEEEECCCC--------------cEEehhhccCCCcEEE
Confidence 2 122221111 11234567788999888 899999999887 4444433678999999
Q ss_pred EEeecCCCEEEEEcCCCcEEEEec
Q 003423 586 LDASFEDEVLFCGDLRGNLVLFPL 609 (821)
Q Consensus 586 l~~s~~~~~L~sgs~dG~i~iw~~ 609 (821)
++|+ ++.++++++.||.+.+|-+
T Consensus 439 v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 439 VNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EEEE-TTEEEEEEEETTEEEEEEE
T ss_pred EEec-CCEEEEEEEeCCeEEEEEe
Confidence 9998 4456666777777666543
No 48
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.3e-30 Score=288.03 Aligned_cols=314 Identities=17% Similarity=0.268 Sum_probs=245.9
Q ss_pred eeee-eEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEE
Q 003423 16 YLGE-ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (821)
Q Consensus 16 ~~~~-Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~ 93 (821)
|..+ ++++.+. + .+|++|. |+.|++||+.+++.+..+..|.+ .|.+++|+++ ..++++
T Consensus 120 h~~~v~~~~~~~--~------~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~-~V~~l~~~~~-----------~~l~s~ 179 (464)
T 3v7d_B 120 HMTSVITCLQFE--D------NYVITGADDKMIRVYDSINKKFLLQLSGHDG-GVWALKYAHG-----------GILVSG 179 (464)
T ss_dssp CSSSCEEEEEEE--T------TEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECST-----------TEEEEE
T ss_pred CCCCcEEEEEEC--C------CEEEEEcCCCcEEEEECCCCcEEEEEeCCCc-CEEEEEEcCC-----------CEEEEE
Confidence 4444 5777777 3 4666655 89999999999999999987665 7999999855 246667
Q ss_pred EcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCcee---
Q 003423 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII--- 170 (821)
Q Consensus 94 ~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~--- 170 (821)
+.|+.|++||+..+ +....+.+|.+.|.+++|++ .+++++|++|+.|+.|++||+.++...
T Consensus 180 s~dg~i~vwd~~~~---------------~~~~~~~~h~~~v~~l~~~~-~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 243 (464)
T 3v7d_B 180 STDRTVRVWDIKKG---------------CCTHVFEGHNSTVRCLDIVE-YKNIKYIVTGSRDNTLHVWKLPKESSVPDH 243 (464)
T ss_dssp ETTSCEEEEETTTT---------------EEEEEECCCSSCEEEEEEEE-SSSCEEEEEEETTSCEEEEECCCCCCC---
T ss_pred eCCCCEEEEECCCC---------------cEEEEECCCCCccEEEEEec-CCCCCEEEEEcCCCcEEEeeCCCCcccccc
Confidence 77999999998743 56778889999999999995 126789999999999999999877543
Q ss_pred --------------------EEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCC
Q 003423 171 --------------------LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230 (821)
Q Consensus 171 --------------------~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 230 (821)
..+..+.. .+.++ ++++.++++|+.||.|++||+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~-----~~~~~~l~~~~~d~~i~vwd~~------------------- 298 (464)
T 3v7d_B 244 GEEHDYPLVFHTPEENPYFVGVLRGHMA-SVRTV-----SGHGNIVVSGSYDNTLIVWDVA------------------- 298 (464)
T ss_dssp ---CCSSEEESCGGGCTTEEEEECCCSS-CEEEE-----EEETTEEEEEETTSCEEEEETT-------------------
T ss_pred cccCCcceEeeccCCCeEEEEEccCccc-eEEEE-----cCCCCEEEEEeCCCeEEEEECC-------------------
Confidence 22333332 23333 3678899999999999999998
Q ss_pred CCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEecccee
Q 003423 231 SSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310 (821)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 310 (821)
+.+.+..+.+|...|.+++|+|++++|++++.||+|++||+.+++. . ..+.+|...
T Consensus 299 --------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~-----~-----~~~~~h~~~ 354 (464)
T 3v7d_B 299 --------------QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL-----M-----YTLQGHTAL 354 (464)
T ss_dssp --------------TTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE-----E-----EEECCCSSC
T ss_pred --------------CCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-----E-----EEEeCCCCc
Confidence 6678888999999999999999999999999999999999988755 3 578899999
Q ss_pred EEEEEEcCCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCc-CCCcccCC
Q 003423 311 VWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF-LPGSLESH 388 (821)
Q Consensus 311 i~~v~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~-~~~~~~~~ 388 (821)
|.+++|++.++++++.||+|++||+ +++...... +.. .+..++++++++++++|+ ||.|++||+... .+..
T Consensus 355 v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~-~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~---- 427 (464)
T 3v7d_B 355 VGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH-HTN-LSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHA---- 427 (464)
T ss_dssp EEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE-CTT-CCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEES----
T ss_pred EEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeec-CCC-CccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEeh----
Confidence 9999999999999999999999999 444444443 333 578889999999999998 899999999542 1111
Q ss_pred ccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEe
Q 003423 389 PEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKL 447 (821)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i 447 (821)
....+...|.+++|+ ++.+++++.++....+.+
T Consensus 428 -------------------------~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 428 -------------------------NILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp -------------------------CTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred -------------------------hhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 012335679999998 445665555444443333
No 49
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.5e-32 Score=295.50 Aligned_cols=326 Identities=11% Similarity=0.107 Sum_probs=244.3
Q ss_pred eeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcC
Q 003423 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (821)
Q Consensus 18 ~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~ 96 (821)
..+++++|+ |+ +++|+++. |+.|++||+.+++....+..+ ..+....+++++ ..++++..+
T Consensus 57 ~~~~~~~~s--~~----g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~----------~~l~~~~~d 118 (420)
T 3vl1_A 57 DAGKGNTFE--KV----GSHLYKARLDGHDFLFNTIIRDGSKMLKRA--DYTAVDTAKLQM----------RRFILGTTE 118 (420)
T ss_dssp BCCTTCEEE--EE----ETTEEEEEETTEEEEEECCSEETTTTSCSC--CEEEEEEECSSS----------CEEEEEETT
T ss_pred ccccceeee--ec----CCeEEEEEcCCcEEEEEecccceeeEEecC--CceEEEEEecCC----------CEEEEEECC
Confidence 345689999 98 56666655 999999999988776655543 123333455442 245556678
Q ss_pred CeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccC
Q 003423 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (821)
Q Consensus 97 ~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~ 176 (821)
+.|++|++... +....+.+|.+.|++++|+| ++++|++|+.|+.|++||+.+++.+..+..+
T Consensus 119 g~i~iwd~~~~---------------~~~~~~~~h~~~v~~~~~~~---~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h 180 (420)
T 3vl1_A 119 GDIKVLDSNFN---------------LQREIDQAHVSEITKLKFFP---SGEALISSSQDMQLKIWSVKDGSNPRTLIGH 180 (420)
T ss_dssp SCEEEECTTSC---------------EEEEETTSSSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTCCCCEEEECC
T ss_pred CCEEEEeCCCc---------------ceeeecccccCccEEEEECC---CCCEEEEEeCCCeEEEEeCCCCcCceEEcCC
Confidence 99999997643 45667789999999999999 9999999999999999999999988888766
Q ss_pred cceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEec--
Q 003423 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG-- 254 (821)
Q Consensus 177 ~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 254 (821)
.. .+.++++ ++++.+|++|+.||.|++||+. ..+.+..+..
T Consensus 181 ~~-~v~~~~~---~~~~~~l~s~~~d~~v~iwd~~---------------------------------~~~~~~~~~~~~ 223 (420)
T 3vl1_A 181 RA-TVTDIAI---IDRGRNVLSASLDGTIRLWECG---------------------------------TGTTIHTFNRKE 223 (420)
T ss_dssp SS-CEEEEEE---ETTTTEEEEEETTSCEEEEETT---------------------------------TTEEEEEECBTT
T ss_pred CC-cEEEEEE---cCCCCEEEEEcCCCcEEEeECC---------------------------------CCceeEEeecCC
Confidence 54 4667777 4788999999999999999998 3333333332
Q ss_pred ----------------------CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEE
Q 003423 255 ----------------------HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (821)
Q Consensus 255 ----------------------h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 312 (821)
|...|.+++|+|++++|++++.||.|++||+++++. .. ....+|...|+
T Consensus 224 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-----~~----~~~~~~~~~v~ 294 (420)
T 3vl1_A 224 NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ-----TI----QLPSKFTCSCN 294 (420)
T ss_dssp BTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE-----EE----EECCTTSSCEE
T ss_pred CCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce-----eE----EcccccCCCce
Confidence 345566666789999999999999999999988754 22 23456889999
Q ss_pred EEEEcC--C-EEEEEeCCCeEEEEcC-CC-ceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcC-CCccc
Q 003423 313 DCCLTD--S-FIITAGEDCTCRVWGS-DG-KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFL-PGSLE 386 (821)
Q Consensus 313 ~v~~~~--~-~l~s~~~dg~i~iwd~-~~-~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~-~~~~~ 386 (821)
+++|++ . +|++++.||.|++||+ .+ ..+..+..|....|.++.+ +++++|++++.||.|++|++.... .....
T Consensus 295 ~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~ 373 (420)
T 3vl1_A 295 SLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAI 373 (420)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEE
T ss_pred eEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccce
Confidence 999994 3 9999999999999999 44 4477888755557888855 578899999999999999995421 00000
Q ss_pred CCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCe----EEEEecCCcEEEEEe
Q 003423 387 SHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT----LYIATNHGYLYHTKL 447 (821)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~----~l~~~~~g~~~~~~i 447 (821)
. .........+...+.+++|+|++. +++++.+|.+..+++
T Consensus 374 ---------------~------~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~ 417 (420)
T 3vl1_A 374 ---------------E------FETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNL 417 (420)
T ss_dssp ---------------C------TTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEES
T ss_pred ---------------e------ccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEec
Confidence 0 000111234567799999999887 888888887765554
No 50
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.1e-31 Score=280.96 Aligned_cols=299 Identities=14% Similarity=0.187 Sum_probs=234.7
Q ss_pred eeeeeeEEEEEeccCCCCCCcceEEeec----CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeE
Q 003423 15 QYLGEISALCFVHLPSHLSSLPFLLAGS----GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (821)
Q Consensus 15 ~~~~~Vt~l~~~~~p~~~~~~~~l~~g~----~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~ 90 (821)
.|..+|++++|+ |+ +..++++|. |+.|+|||+.+++........+...|.+++|+|+. +++ ..+
T Consensus 16 ~h~~~v~~~~~~--p~---~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~---~~l 83 (357)
T 3i2n_A 16 GFNYTVFDCKWV--PC---SAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATS----LQQ---RYL 83 (357)
T ss_dssp ECSSCEEEEEEC--TT---SSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCC----TTT---CCE
T ss_pred CCCCceEEEEEc--CC---CceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCC----CCC---ceE
Confidence 378899999999 98 345666663 79999999999987666554455689999999651 111 246
Q ss_pred EEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEee---cCCCCCEEEEEECCCcEEEEEccCC
Q 003423 91 VALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLK---VCNGNRSLAIGCSDNSIRVWDISNS 167 (821)
Q Consensus 91 l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~---~~~~~~~l~t~~~d~~i~iwd~~~~ 167 (821)
+++..++.|++|++.... .....+.+|.+.|.+++|.+ .++++++|++|+.|+.|++||+.++
T Consensus 84 ~~~~~dg~i~iwd~~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~ 149 (357)
T 3i2n_A 84 ATGDFGGNLHIWNLEAPE--------------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQK 149 (357)
T ss_dssp EEEETTSCEEEECTTSCS--------------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSC
T ss_pred EEecCCCeEEEEeCCCCC--------------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCC
Confidence 666679999999987542 25677889999999996532 1128999999999999999999988
Q ss_pred c-eeEEEccCc---ceeEEEEeecc-CCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccc
Q 003423 168 S-IILEVHSPE---RCLLYSMKLWG-DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (821)
Q Consensus 168 ~-~~~~~~~~~---~~~~~s~~~~~-~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (821)
. .+..+..+. ...++++.+.. .++++.++++|+.||.|++||+.
T Consensus 150 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~------------------------------- 198 (357)
T 3i2n_A 150 DDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLR------------------------------- 198 (357)
T ss_dssp SSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETT-------------------------------
T ss_pred CCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECc-------------------------------
Confidence 7 566665433 33566666422 36789999999999999999998
Q ss_pred ccceeeEEEEecCCCcEEEEEEcC---CCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC-
Q 003423 243 QHTAVNLFRLVGHEGSIFRIEWSS---CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD- 318 (821)
Q Consensus 243 ~~~~~~~~~~~~h~~~I~~l~~s~---~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~- 318 (821)
..... ....|...|.+++|+| ++++|++++.||.|++||+++++. ..........+|...|++++|++
T Consensus 199 --~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~ 270 (357)
T 3i2n_A 199 --NMALR-WETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP-----TKGFASVSEKAHKSTVWQVRHLPQ 270 (357)
T ss_dssp --TTEEE-EEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEET-----TTEEEEEEEECCSSCEEEEEEETT
T ss_pred --cCcee-eecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc-----ccceeeeccCCCcCCEEEEEECCC
Confidence 33333 3367999999999999 899999999999999999998655 33221124458999999999995
Q ss_pred -C-EEEEEeCCCeEEEEcCC-C-------------------ceeeEeecccCCCeEEEEEecCCCEEE-EEeCCCcEEEE
Q 003423 319 -S-FIITAGEDCTCRVWGSD-G-------------------KQLKMIKEHIGRGIWRCLYDSLSSLLV-TAGFDSAIKVH 375 (821)
Q Consensus 319 -~-~l~s~~~dg~i~iwd~~-~-------------------~~~~~~~~h~~~~i~~l~~~~~~~~l~-tg~~dg~I~iw 375 (821)
. ++++++.||.|++||+. + +.+..+..|.. .|++++|+|++++|+ +++.||.|++|
T Consensus 271 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~s~~~d~~i~iw 349 (357)
T 3i2n_A 271 NRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ-PISSLDWSPDKRGLCVCSSFDQTVRVL 349 (357)
T ss_dssp EEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS-CEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred CCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCC-CeeEEEEcCCCCeEEEEecCCCcEEEE
Confidence 3 79999999999999983 2 35677888887 699999999999888 89999999999
Q ss_pred EcCC
Q 003423 376 QFQA 379 (821)
Q Consensus 376 d~~~ 379 (821)
|+..
T Consensus 350 ~~~~ 353 (357)
T 3i2n_A 350 IVTK 353 (357)
T ss_dssp EECC
T ss_pred ECCC
Confidence 9954
No 51
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=8.3e-31 Score=281.57 Aligned_cols=208 Identities=13% Similarity=0.128 Sum_probs=173.1
Q ss_pred cceeeeccCCCCcEEEEEEeecCCCC-CEEEEEECCCcEEEEEccCCceeEEEcc-CcceeEEEEeeccCCc-cCeEEEE
Q 003423 122 LSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSIILEVHS-PERCLLYSMKLWGDNL-EALRIAS 198 (821)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~-~~l~t~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~s~~~~~~s~-~~~~l~s 198 (821)
++....+.+|.+.|++++|+| ++ ++|++|+.|+.|++||+.+++....+.. .+...+.+++| ++ ++.+|++
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~---~~~~~~~l~s 136 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHP---THPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKF---NQFNTNQLFV 136 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECS---SCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEE---ETTEEEEEEE
T ss_pred cceEEeccCCCCCEEEEEECC---CCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEe---CCCCCCEEEE
Confidence 456778899999999999999 88 8999999999999999998888777653 34456777777 45 6789999
Q ss_pred EeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCC
Q 003423 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278 (821)
Q Consensus 199 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg 278 (821)
++.|+.|++||+.+. ....+....+|...|.+++|+|++++|++++.|+
T Consensus 137 ~~~d~~i~iwd~~~~-------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 185 (383)
T 3ei3_B 137 SSIRGATTLRDFSGS-------------------------------VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTG 185 (383)
T ss_dssp EETTTEEEEEETTSC-------------------------------EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTS
T ss_pred EeCCCEEEEEECCCC-------------------------------ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCC
Confidence 999999999999810 1122222234568899999999999999999999
Q ss_pred eEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC--C-EEEEEeCCCeEEEEcC-C----CceeeEeecccCCC
Q 003423 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--S-FIITAGEDCTCRVWGS-D----GKQLKMIKEHIGRG 350 (821)
Q Consensus 279 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~-~l~s~~~dg~i~iwd~-~----~~~~~~~~~h~~~~ 350 (821)
.|++||++.... ..+.+|...|.+++|++ . ++++++.|++|++||+ . +..+..+ .|.. .
T Consensus 186 ~i~i~d~~~~~~-----------~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~-~ 252 (383)
T 3ei3_B 186 RLLLLGLDGHEI-----------FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEK-P 252 (383)
T ss_dssp EEEEEETTSCEE-----------EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSS-C
T ss_pred CEEEEECCCCEE-----------EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCC-c
Confidence 999999953322 57889999999999994 4 8999999999999999 3 4555555 6777 6
Q ss_pred eEEEEEec-CCCEEEEEeCCCcEEEEEcCC
Q 003423 351 IWRCLYDS-LSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 351 i~~l~~~~-~~~~l~tg~~dg~I~iwd~~~ 379 (821)
|++++|+| ++++|++++.|+.|++||++.
T Consensus 253 v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 253 VNAAYFNPTDSTKLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp EEEEEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred eEEEEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence 99999999 999999999999999999954
No 52
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.5e-30 Score=274.50 Aligned_cols=293 Identities=15% Similarity=0.202 Sum_probs=232.3
Q ss_pred cceeeeccCCCCcEEEEEEeecCCC-CCEEEEEECCCcEEEEEccCCc-----eeEEEccCcceeEEEEeeccCCccCeE
Q 003423 122 LSLVQSLPRLSHWVFDVCFLKVCNG-NRSLAIGCSDNSIRVWDISNSS-----IILEVHSPERCLLYSMKLWGDNLEALR 195 (821)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~s~~~~~~s~~~~~ 195 (821)
+++..+|+||.+.|++++|+| + +++||||+.|++|+|||+.+.+ ....+.+|.. .+.++.| ++++.+
T Consensus 28 ~~l~~tL~GH~~~V~~v~~sp---~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~-~V~~~~~---s~dg~~ 100 (340)
T 4aow_A 28 MTLRGTLKGHNGWVTQIATTP---QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH-FVSDVVI---SSDGQF 100 (340)
T ss_dssp EEEEEEECCCSSCEEEEEECT---TCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSS-CEEEEEE---CTTSSE
T ss_pred eEEEEEECCccCCEEEEEEeC---CCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCC-CEEEEEE---CCCCCE
Confidence 566778999999999999999 6 6899999999999999998654 2445555543 4667777 689999
Q ss_pred EEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEe
Q 003423 196 IASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (821)
Q Consensus 196 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s 275 (821)
|++|+.|+.|++|+.. ..........+...+..+.+++++++|++++
T Consensus 101 l~s~~~d~~i~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s 147 (340)
T 4aow_A 101 ALSGSWDGTLRLWDLT---------------------------------TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS 147 (340)
T ss_dssp EEEEETTSEEEEEETT---------------------------------TTEEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred EEEEcccccceEEeec---------------------------------ccceeeeecCCCCceeEEEEeecCccceeec
Confidence 9999999999999998 5556666778899999999999999999999
Q ss_pred CCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc----CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCC
Q 003423 276 DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT----DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRG 350 (821)
Q Consensus 276 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~----~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~ 350 (821)
.|+.+++||+..... .. ....+|...+..++|. ..++++++.|++|++||+ .++.+..+.+|.+ .
T Consensus 148 ~d~~~~~~d~~~~~~-----~~----~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~-~ 217 (340)
T 4aow_A 148 RDKTIKLWNTLGVCK-----YT----VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG-Y 217 (340)
T ss_dssp TTSCEEEECTTSCEE-----EE----ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS-C
T ss_pred CCCeEEEEEeCCCce-----EE----EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC-c
Confidence 999999999876543 11 3566899999999997 357899999999999999 6788889999988 6
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecC
Q 003423 351 IWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSE 430 (821)
Q Consensus 351 i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~ 430 (821)
|++++|+|++++|++|+.||.|++||++... .+... .+...+.+++|+|+
T Consensus 218 v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~-----------------~~~~~-------------~~~~~v~~~~~~~~ 267 (340)
T 4aow_A 218 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGK-----------------HLYTL-------------DGGDIINALCFSPN 267 (340)
T ss_dssp EEEEEECTTSSEEEEEETTCEEEEEETTTTE-----------------EEEEE-------------ECSSCEEEEEECSS
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEeccCc-----------------eeeee-------------cCCceEEeeecCCC
Confidence 9999999999999999999999999995421 01000 11245899999999
Q ss_pred CeEEEEecCCcEEEEEecCCCcceeeEee--------eccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEec
Q 003423 431 DTLYIATNHGYLYHTKLCDMDSVNWNKIL--------QVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVV 502 (821)
Q Consensus 431 ~~~l~~~~~g~~~~~~i~~~~~~~~~~~~--------~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~ 502 (821)
+.+++++.++.+..+++ ......... ...+...+.++++.+ ++++|++|+.||.|++|++.
T Consensus 268 ~~~~~~~~d~~i~iwd~---~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--------dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 268 RYWLCAATGPSIKIWDL---EGKIIVDELKQEVISTSSKAEPPQCTSLAWSA--------DGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp SSEEEEEETTEEEEEET---TTTEEEEEECCC-------CCCCCEEEEEECT--------TSSEEEEEETTSCEEEEEEE
T ss_pred CceeeccCCCEEEEEEC---CCCeEEEeccccceeeeccCCCCCEEEEEECC--------CCCEEEEEeCCCEEEEEeCC
Confidence 99999998888865443 332211111 122456777887755 55899999999999999998
Q ss_pred CCC
Q 003423 503 GDV 505 (821)
Q Consensus 503 ~~~ 505 (821)
++.
T Consensus 337 tGt 339 (340)
T 4aow_A 337 IGT 339 (340)
T ss_dssp C--
T ss_pred CcC
Confidence 753
No 53
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-32 Score=295.65 Aligned_cols=350 Identities=17% Similarity=0.249 Sum_probs=254.1
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEee-----------cCCeEEEEECCCCe---eeeEEEeeccccEEeEEeccccCCCC
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAG-----------SGSQVLLYDLEAGT---LIRPFQVFHGIRLHGISCNFINCTEG 81 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g-----------~~~~i~iwd~~t~~---~~~~~~~~~~~~i~~i~~~~~~~~~~ 81 (821)
+..+|++++|+ |+ +..+|++| .|+.|+|||+.+++ ++..+. +...|.+++|++++
T Consensus 11 ~~~~v~~~~~s--p~---g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~---- 79 (416)
T 2pm9_A 11 EFSRTATFAWS--HD---KIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQ--VDSKFNDLDWSHNN---- 79 (416)
T ss_dssp EEEESCBCCBC--SS---SSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCC--CSSCEEEEEECSSS----
T ss_pred hhhhcceEeeC--CC---CCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEe--cCCceEEEEECCCC----
Confidence 45689999999 98 34478887 47899999999876 344333 34579999999663
Q ss_pred CCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCC-CCEEEEEECCCcEE
Q 003423 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG-NRSLAIGCSDNSIR 160 (821)
Q Consensus 82 ~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~-~~~l~t~~~d~~i~ 160 (821)
..++++..++.|++|++..... ..+....+.+|.+.|++++|+| + +++|++|+.|+.|+
T Consensus 80 ------~~l~~~~~dg~v~vw~~~~~~~-----------~~~~~~~~~~h~~~v~~~~~~~---~~~~~l~s~~~dg~v~ 139 (416)
T 2pm9_A 80 ------KIIAGALDNGSLELYSTNEANN-----------AINSMARFSNHSSSVKTVKFNA---KQDNVLASGGNNGEIF 139 (416)
T ss_dssp ------SCEEEEESSSCEEEECCSSTTS-----------CCCEEEECCCSSSCCCEEEECS---SSTTBEEEECSSSCEE
T ss_pred ------CeEEEEccCCeEEEeecccccc-----------cccchhhccCCccceEEEEEcC---CCCCEEEEEcCCCeEE
Confidence 2455556789999999985210 0246788899999999999999 7 88999999999999
Q ss_pred EEEccCCc------eeEEE--ccCcceeEEEEeeccCCcc-CeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCC
Q 003423 161 VWDISNSS------IILEV--HSPERCLLYSMKLWGDNLE-ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSS 231 (821)
Q Consensus 161 iwd~~~~~------~~~~~--~~~~~~~~~s~~~~~~s~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 231 (821)
+||+.+++ ....+ ...+...+.++.+ +++ +.++++++.||.|++||+.
T Consensus 140 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~l~~~~~dg~v~iwd~~-------------------- 196 (416)
T 2pm9_A 140 IWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAW---NQSLAHVFASAGSSNFASIWDLK-------------------- 196 (416)
T ss_dssp BCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEE---CSSCTTEEEEESSSSCEEEEETT--------------------
T ss_pred EEECCCCccccccccccccccccCCCCCeeEEEe---CCCCCcEEEEEcCCCCEEEEECC--------------------
Confidence 99999876 33222 1122334566666 466 7899999999999999998
Q ss_pred CCcceeeecccccceeeEEEEecC------CCcEEEEEEcCCC-CEEEEEeCCC---eEEEEecccCcccCCCCceeeec
Q 003423 232 SDFKCFKLQDQQHTAVNLFRLVGH------EGSIFRIEWSSCG-SKLVSVSDDR---SARIWEVRAEYWKDSDSIEEVGS 301 (821)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~h------~~~I~~l~~s~~~-~~l~s~s~Dg---~i~iwd~~~~~~~~~~~~~~~~~ 301 (821)
....+..+..| ...|.+++|+|++ .+|++++.|+ .|++||+++... ..
T Consensus 197 -------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-----~~---- 254 (416)
T 2pm9_A 197 -------------AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-----PL---- 254 (416)
T ss_dssp -------------TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-----CS----
T ss_pred -------------CCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-----Cc----
Confidence 45566666665 8899999999997 6899999999 999999998532 11
Q ss_pred eEEe-ccceeEEEEEEc---CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCC-CEEEEEeCCCcEEEE
Q 003423 302 SVLY-GHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVH 375 (821)
Q Consensus 302 ~~~~-~h~~~i~~v~~~---~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~-~~l~tg~~dg~I~iw 375 (821)
..+. +|...|++++|+ +.+|++++.|+.|++||+ +++.+..+..|.. .|++++|+|++ .+|++++.||.|++|
T Consensus 255 ~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~d~~i~iw 333 (416)
T 2pm9_A 255 QTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN-WCFKTKFAPEAPDLFACASFDNKIEVQ 333 (416)
T ss_dssp BCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS-CCCCEEECTTCTTEEEECCSSSEEEEE
T ss_pred EEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC-ceEEEEECCCCCCEEEEEecCCcEEEE
Confidence 3556 899999999997 479999999999999999 7888999999988 69999999998 899999999999999
Q ss_pred EcCCcC-CCcccCCccccccCCCcceEEee-----cCC-cccceeccCCCCcceEEEEeecCCeEEEEec-CCcEE
Q 003423 376 QFQAFL-PGSLESHPEAKEFNGRTEIFSIK-----IPN-FSEQIRLTDSKSEYVRCLHLTSEDTLYIATN-HGYLY 443 (821)
Q Consensus 376 d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~-~g~~~ 443 (821)
++.... ....+....... .....++... .+. ..........+...+.+++|+|+|+++++++ ++.+.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~ 408 (416)
T 2pm9_A 334 TLQNLTNTLDEQETETKQQ-ESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVS 408 (416)
T ss_dssp ESCCCCCSSCC-----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBC
T ss_pred EccCCCCCccccccccccc-CCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEE
Confidence 996532 211111000000 0000000000 000 0000011223456788999999999988776 44453
No 54
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.6e-30 Score=278.23 Aligned_cols=302 Identities=13% Similarity=0.173 Sum_probs=234.8
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEee-cCCeEEEEECCCCe--eeeEEEeeccccEEeEEeccccCCCCCCccceeeEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAG-SGSQVLLYDLEAGT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g-~~~~i~iwd~~t~~--~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~ 92 (821)
|.++|++++|+ |+ +.+|++| .++.|++||+.+++ .+..+..+.. .|.++.|+|++ ..+++
T Consensus 7 ~~~~i~~~~~s--~~----~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~----------~~l~~ 69 (372)
T 1k8k_C 7 LVEPISCHAWN--KD----RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG-QVTGVDWAPDS----------NRIVT 69 (372)
T ss_dssp CSSCCCEEEEC--TT----SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSS-CEEEEEEETTT----------TEEEE
T ss_pred cCCCeEEEEEC--CC----CCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCC-cccEEEEeCCC----------CEEEE
Confidence 67889999999 98 6777777 58999999999997 7888876555 79999999663 25666
Q ss_pred EEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce---
Q 003423 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI--- 169 (821)
Q Consensus 93 ~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~--- 169 (821)
+..++.|++|++.... ......+.+|...|.+++|+| ++++|++|+.|+.|++||+..+..
T Consensus 70 ~~~dg~i~vwd~~~~~-------------~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~v~i~d~~~~~~~~~ 133 (372)
T 1k8k_C 70 CGTDRNAYVWTLKGRT-------------WKPTLVILRINRAARCVRWAP---NEKKFAVGSGSRVISICYFEQENDWWV 133 (372)
T ss_dssp EETTSCEEEEEEETTE-------------EEEEEECCCCSSCEEEEEECT---TSSEEEEEETTSSEEEEEEETTTTEEE
T ss_pred EcCCCeEEEEECCCCe-------------eeeeEEeecCCCceeEEEECC---CCCEEEEEeCCCEEEEEEecCCCccee
Confidence 6678999999997542 234455678999999999999 999999999999999999998763
Q ss_pred eEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeE
Q 003423 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (821)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (821)
...+..++...+.++.+ ++++.++++|+.||.|++||+............... ........+
T Consensus 134 ~~~~~~~~~~~i~~~~~---~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~---------------~~~~~~~~~ 195 (372)
T 1k8k_C 134 CKHIKKPIRSTVLSLDW---HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG---------------SKMPFGELM 195 (372)
T ss_dssp EEEECTTCCSCEEEEEE---CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTB---------------SCCCTTCEE
T ss_pred eeeeecccCCCeeEEEE---cCCCCEEEEEcCCCCEEEEEcccccccccccccccc---------------cccchhhhe
Confidence 44444444556778887 578899999999999999998632211110000000 000134667
Q ss_pred EEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc-CCEEEEEeCCC
Q 003423 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDC 328 (821)
Q Consensus 250 ~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~l~s~~~dg 328 (821)
..+.+|.+.|.+++|+|++++|++++.|+.|++||+.+++. . ..+..|..+|.+++|+ +..+++++.|+
T Consensus 196 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~-----~~~~~~~~~v~~~~~~~~~~~l~~~~d~ 265 (372)
T 1k8k_C 196 FESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA-----V-----ATLASETLPLLAVTFITESSLVAAGHDC 265 (372)
T ss_dssp EECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE-----E-----EEEECSSCCEEEEEEEETTEEEEEETTS
T ss_pred EecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCce-----e-----EEEccCCCCeEEEEEecCCCEEEEEeCC
Confidence 77889999999999999999999999999999999998765 3 5777899999999998 44555555999
Q ss_pred eEEEEcC-C--Cc--ee------------------------------------eEe-ecccCCCeEEEEEe-cCC---CE
Q 003423 329 TCRVWGS-D--GK--QL------------------------------------KMI-KEHIGRGIWRCLYD-SLS---SL 362 (821)
Q Consensus 329 ~i~iwd~-~--~~--~~------------------------------------~~~-~~h~~~~i~~l~~~-~~~---~~ 362 (821)
.+++|++ . ++ .+ ..+ .+|.. .|+++++. +++ ++
T Consensus 266 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~g~~~~~ 344 (372)
T 1k8k_C 266 FPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN-SVSQISVLSGGKAKCSQ 344 (372)
T ss_dssp SCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSS-CEEEEEEEESTTTSCSE
T ss_pred eEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccC-CcceeEEecCCCcceee
Confidence 9999999 4 31 10 223 37887 69999966 666 99
Q ss_pred EEEEeCCCcEEEEEcCC
Q 003423 363 LVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 363 l~tg~~dg~I~iwd~~~ 379 (821)
|++|+.||.|++|+++.
T Consensus 345 l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 345 FCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp EEEEETTSEEEEEEHHH
T ss_pred EEEecCCCceEEEEecC
Confidence 99999999999999943
No 55
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.3e-30 Score=284.02 Aligned_cols=285 Identities=19% Similarity=0.361 Sum_probs=244.0
Q ss_pred CCCCCcceeeccce-------eeeeeEEEEEeccCCCCCCcceEEee-cCCeEEEEECCCCeeeeEEEeeccccEEeEEe
Q 003423 2 GKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAG-SGSQVLLYDLEAGTLIRPFQVFHGIRLHGISC 73 (821)
Q Consensus 2 ~~~~i~~w~~~~~~-------~~~~Vt~l~~~~~p~~~~~~~~l~~g-~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~ 73 (821)
.|++|++||+.+++ |.++|++++|+ ++ ++++| .|+.|++||+.+++.+..+..+.. .|.++.+
T Consensus 137 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~------~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~ 207 (445)
T 2ovr_B 137 DDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DN------IIISGSTDRTLKVWNAETGECIHTLYGHTS-TVRCMHL 207 (445)
T ss_dssp TTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TT------EEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEE
T ss_pred CCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CC------EEEEEeCCCeEEEEECCcCcEEEEECCCCC-cEEEEEe
Confidence 58999999999876 77889999999 43 55555 489999999999999999887655 7999998
Q ss_pred ccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEE
Q 003423 74 NFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (821)
Q Consensus 74 ~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~ 153 (821)
++. .++++..|+.|++||+..+ +....+.+|...|.+++| ++++|++|
T Consensus 208 ~~~------------~l~s~s~dg~i~~wd~~~~---------------~~~~~~~~~~~~v~~~~~-----~~~~l~~~ 255 (445)
T 2ovr_B 208 HEK------------RVVSGSRDATLRVWDIETG---------------QCLHVLMGHVAAVRCVQY-----DGRRVVSG 255 (445)
T ss_dssp ETT------------EEEEEETTSEEEEEESSSC---------------CEEEEEECCSSCEEEEEE-----CSSCEEEE
T ss_pred cCC------------EEEEEeCCCEEEEEECCCC---------------cEEEEEcCCcccEEEEEE-----CCCEEEEE
Confidence 733 4677777999999998753 467788899999999987 56789999
Q ss_pred ECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCC
Q 003423 154 CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (821)
Q Consensus 154 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 233 (821)
+.|+.|++||+.+++.+..+..+.. .+.++.+ ++.++++|+.||.|++||+.
T Consensus 256 ~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~-----~~~~l~~~~~d~~i~i~d~~---------------------- 307 (445)
T 2ovr_B 256 AYDFMVKVWDPETETCLHTLQGHTN-RVYSLQF-----DGIHVVSGSLDTSIRVWDVE---------------------- 307 (445)
T ss_dssp ETTSCEEEEEGGGTEEEEEECCCSS-CEEEEEE-----CSSEEEEEETTSCEEEEETT----------------------
T ss_pred cCCCEEEEEECCCCcEeEEecCCCC-ceEEEEE-----CCCEEEEEeCCCeEEEEECC----------------------
Confidence 9999999999999999988886654 4566665 67899999999999999998
Q ss_pred cceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEec---ccee
Q 003423 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG---HNAR 310 (821)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---h~~~ 310 (821)
..+.+..+.+|...+.++.++ +++|++++.||.|++||+.+++. . ..+.+ |...
T Consensus 308 -----------~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~-----~-----~~~~~~~~~~~~ 364 (445)
T 2ovr_B 308 -----------TGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQC-----L-----QTLQGPNKHQSA 364 (445)
T ss_dssp -----------TCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCE-----E-----EEECSTTSCSSC
T ss_pred -----------CCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcE-----E-----EEEccCCCCCCC
Confidence 667788889999999999884 67999999999999999988755 3 34444 8899
Q ss_pred EEEEEEcCCEEEEEeCCCeEEEEcC-CCceeeEe-----ecccCCCeEEEEEecCCCEEEEEeCCCc----EEEEEcCC
Q 003423 311 VWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMI-----KEHIGRGIWRCLYDSLSSLLVTAGFDSA----IKVHQFQA 379 (821)
Q Consensus 311 i~~v~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~-----~~h~~~~i~~l~~~~~~~~l~tg~~dg~----I~iwd~~~ 379 (821)
|++++|+++++++++.||.|++||+ +++.+..+ ..|.+ .|++++|+|++.++++|+.||. |.+||++.
T Consensus 365 v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 365 VTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG-VVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTC-EEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCc-eEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 9999999999999999999999999 78888877 35666 6999999999999999999998 99999864
No 56
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-30 Score=276.00 Aligned_cols=280 Identities=16% Similarity=0.174 Sum_probs=235.4
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
|.++|++++|+ |+ +.+|++|. |+.|+|||+.+++.+..+..+.. .|.+++|+|++ ..++++.
T Consensus 31 h~~~v~~~~~s--~~----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~----------~~l~s~~ 93 (369)
T 3zwl_B 31 HERPLTQVKYN--KE----GDLLFSCSKDSSASVWYSLNGERLGTLDGHTG-TIWSIDVDCFT----------KYCVTGS 93 (369)
T ss_dssp CSSCEEEEEEC--TT----SCEEEEEESSSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTS----------SEEEEEE
T ss_pred eeceEEEEEEc--CC----CCEEEEEeCCCEEEEEeCCCchhhhhhhhcCC-cEEEEEEcCCC----------CEEEEEe
Confidence 78899999999 98 66777765 89999999999999999987665 79999999653 2566666
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECC-----CcEEEEEccCCce
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD-----NSIRVWDISNSSI 169 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d-----~~i~iwd~~~~~~ 169 (821)
.|+.|++|++... +....+. |...|.+++|+| ++++|++++.+ +.|++||+.++..
T Consensus 94 ~dg~i~iwd~~~~---------------~~~~~~~-~~~~v~~~~~~~---~~~~l~~~~~~~~~~~g~i~~~d~~~~~~ 154 (369)
T 3zwl_B 94 ADYSIKLWDVSNG---------------QCVATWK-SPVPVKRVEFSP---CGNYFLAILDNVMKNPGSINIYEIERDSA 154 (369)
T ss_dssp TTTEEEEEETTTC---------------CEEEEEE-CSSCEEEEEECT---TSSEEEEEECCBTTBCCEEEEEEEEECTT
T ss_pred CCCeEEEEECCCC---------------cEEEEee-cCCCeEEEEEcc---CCCEEEEecCCccCCCCEEEEEEecCCcc
Confidence 7899999998743 3445555 888999999999 99999999998 9999999987643
Q ss_pred e-----------EEEccCcc-eeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCccee
Q 003423 170 I-----------LEVHSPER-CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF 237 (821)
Q Consensus 170 ~-----------~~~~~~~~-~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (821)
. ..+..+.. ..+.++++ ++++.++++|+.||.|++||+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~dg~i~i~d~~-------------------------- 205 (369)
T 3zwl_B 155 THELTKVSEEPIHKIITHEGLDAATVAGW---STKGKYIIAGHKDGKISKYDVS-------------------------- 205 (369)
T ss_dssp TCCEEEECSSCSEEEECCTTCCCEEEEEE---CGGGCEEEEEETTSEEEEEETT--------------------------
T ss_pred ceeecccccceeeeccCCcCccceeEEEE---cCCCCEEEEEcCCCEEEEEECC--------------------------
Confidence 2 22222221 14556666 5789999999999999999998
Q ss_pred eecccccc-eeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEE
Q 003423 238 KLQDQQHT-AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCL 316 (821)
Q Consensus 238 ~~~~~~~~-~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~ 316 (821)
. ...+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++. .....+...+.+++|
T Consensus 206 -------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-----------~~~~~~~~~~~~~~~ 267 (369)
T 3zwl_B 206 -------NNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV-----------LKKYETDCPLNTAVI 267 (369)
T ss_dssp -------TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----------EEEEECSSCEEEEEE
T ss_pred -------CCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCce-----------eeeecCCCCceeEEe
Confidence 3 567788889999999999999999999999999999999998765 233447888999999
Q ss_pred c--CCEEEEEeCCC--------------eEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 317 T--DSFIITAGEDC--------------TCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 317 ~--~~~l~s~~~dg--------------~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
+ +.++++++.++ .+++||. .++.+..+.+|.. .|++++|+|++++|++++.||.|++|+++.
T Consensus 268 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 268 TPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG-PLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp CSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred cCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccC-cEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 8 58999999888 8999999 7888999999988 699999999999999999999999999965
No 57
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-32 Score=298.27 Aligned_cols=307 Identities=12% Similarity=0.142 Sum_probs=240.9
Q ss_pred CCCCCcceeeccce---------eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCC----CeeeeEEEeecccc
Q 003423 2 GKKDLSEWRLDVGQ---------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA----GTLIRPFQVFHGIR 67 (821)
Q Consensus 2 ~~~~i~~w~~~~~~---------~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t----~~~~~~~~~~~~~~ 67 (821)
.|+.|++|++.++. |..+|++++|+ |+ +.+|++|. |+.|++||+.+ .+.+..+..+.. .
T Consensus 43 ~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s--~~----~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~-~ 115 (416)
T 2pm9_A 43 TDSSLELWSLLAADSEKPIASLQVDSKFNDLDWS--HN----NKIIAGALDNGSLELYSTNEANNAINSMARFSNHSS-S 115 (416)
T ss_dssp CCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEEC--SS----SSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSS-C
T ss_pred CCCeEEEEEccCCCCCcEEEEEecCCceEEEEEC--CC----CCeEEEEccCCeEEEeecccccccccchhhccCCcc-c
Confidence 57899999998763 66789999999 98 56777765 89999999998 356777766554 7
Q ss_pred EEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCC-
Q 003423 68 LHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG- 146 (821)
Q Consensus 68 i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~- 146 (821)
|.++.|+|+. + ..++++..++.|++||+.........+ .......+.+|.+.|.+++|+| +
T Consensus 116 v~~~~~~~~~------~---~~l~s~~~dg~v~iwd~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~---~~ 177 (416)
T 2pm9_A 116 VKTVKFNAKQ------D---NVLASGGNNGEIFIWDMNKCTESPSNY------TPLTPGQSMSSVDEVISLAWNQ---SL 177 (416)
T ss_dssp CCEEEECSSS------T---TBEEEECSSSCEEBCBTTTTSSCTTTC------CCBCCCCSCCSSCCCCEEEECS---SC
T ss_pred eEEEEEcCCC------C---CEEEEEcCCCeEEEEECCCCccccccc------cccccccccCCCCCeeEEEeCC---CC
Confidence 9999999651 1 245555568999999997543100000 0112234578999999999999 7
Q ss_pred CCEEEEEECCCcEEEEEccCCceeEEEccCc-----ceeEEEEeeccCCccC-eEEEEEeeCC---EEEEEEcccCCccc
Q 003423 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPE-----RCLLYSMKLWGDNLEA-LRIASGTIYN---EIIVWKVDWEHVAP 217 (821)
Q Consensus 147 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~s~~~~~~s~~~-~~l~sg~~dg---~i~vwd~~~~~~~~ 217 (821)
+.+|++++.|+.|++||+.+++.+..+..+. ...+.++++ ++++ .++++++.|+ .|++||+..
T Consensus 178 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~l~~~~~d~~~~~i~~~d~~~----- 249 (416)
T 2pm9_A 178 AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEW---HPKNSTRVATATGSDNDPSILIWDLRN----- 249 (416)
T ss_dssp TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEE---CSSCTTEEEEEECCSSSCCCCEEETTS-----
T ss_pred CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEE---CCCCCCEEEEEECCCCCceEEEEeCCC-----
Confidence 7899999999999999999999988887663 456778877 4564 6899999998 999999981
Q ss_pred CCCCCCCcccCCCCCCcceeeecccccceeeEEEEe-cCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecccCcccCCCC
Q 003423 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDS 295 (821)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~I~~l~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~ 295 (821)
...++..+. +|...|.+++|+| ++++|++++.|++|++||+.+++.
T Consensus 250 ---------------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~----- 297 (416)
T 2pm9_A 250 ---------------------------ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ----- 297 (416)
T ss_dssp ---------------------------TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE-----
T ss_pred ---------------------------CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc-----
Confidence 123445566 8999999999999 899999999999999999988755
Q ss_pred ceeeeceEEeccceeEEEEEEcC---CEEEEEeCCCeEEEEcC-CCceeeEee---------------------------
Q 003423 296 IEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGS-DGKQLKMIK--------------------------- 344 (821)
Q Consensus 296 ~~~~~~~~~~~h~~~i~~v~~~~---~~l~s~~~dg~i~iwd~-~~~~~~~~~--------------------------- 344 (821)
. ..+.+|...|++++|++ .+|++++.|+.|++|++ .++......
T Consensus 298 ~-----~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (416)
T 2pm9_A 298 L-----SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPS 372 (416)
T ss_dssp E-----EEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCC
T ss_pred c-----eeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccc
Confidence 3 57789999999999993 69999999999999999 332211110
Q ss_pred --------cccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 345 --------EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 345 --------~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
.|.. ++.+++|+|+|++|++++.|+.|++|++..
T Consensus 373 ~~~~~~~~~~~~-~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 373 VFHLQAPTWYGE-PSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp SSCCCCCSTTCC-CSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred cccccCCccccC-CccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 1334 578999999999999999999999999854
No 58
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.2e-30 Score=302.97 Aligned_cols=284 Identities=14% Similarity=0.207 Sum_probs=224.3
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCC-----eeeeEEEeeccccEEeEEeccccCCCCCCccceee
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG-----TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~-----~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~ 89 (821)
|.+.|++++|+ |+ ...+|++|+ |+.|+|||+.+. .....+..|.. .|.+++|++++ ..
T Consensus 381 H~~~V~~v~~~--~~---~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~-~v~~v~~s~~g----------~~ 444 (694)
T 3dm0_A 381 HTDMVTAIATP--ID---NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH-FVEDVVLSSDG----------QF 444 (694)
T ss_dssp CSSCEEEEECC--TT---CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSS-CEEEEEECTTS----------SE
T ss_pred CCceeEEEEec--CC---CCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCC-cEEEEEECCCC----------CE
Confidence 88999999999 87 456777766 899999999763 44566666555 79999999663 24
Q ss_pred EEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce
Q 003423 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (821)
Q Consensus 90 ~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~ 169 (821)
+++++.|+.|+|||+... .....+.+|.+.|++++|+| ++++|++|+.|++|++||......
T Consensus 445 l~sgs~Dg~v~vwd~~~~---------------~~~~~~~~h~~~v~~~~~s~---~~~~l~s~s~D~~i~iwd~~~~~~ 506 (694)
T 3dm0_A 445 ALSGSWDGELRLWDLAAG---------------VSTRRFVGHTKDVLSVAFSL---DNRQIVSASRDRTIKLWNTLGECK 506 (694)
T ss_dssp EEEEETTSEEEEEETTTT---------------EEEEEEECCSSCEEEEEECT---TSSCEEEEETTSCEEEECTTSCEE
T ss_pred EEEEeCCCcEEEEECCCC---------------cceeEEeCCCCCEEEEEEeC---CCCEEEEEeCCCEEEEEECCCCcc
Confidence 555667999999998743 46678889999999999999 999999999999999999865543
Q ss_pred eEEEc--cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccccccee
Q 003423 170 ILEVH--SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (821)
Q Consensus 170 ~~~~~--~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (821)
..... ..+...+.++.|.+. .....+++|+.|+.|++||+. ..+
T Consensus 507 ~~~~~~~~~h~~~v~~~~~~~~-~~~~~l~s~s~d~~v~vwd~~---------------------------------~~~ 552 (694)
T 3dm0_A 507 YTISEGGEGHRDWVSCVRFSPN-TLQPTIVSASWDKTVKVWNLS---------------------------------NCK 552 (694)
T ss_dssp EEECSSTTSCSSCEEEEEECSC-SSSCEEEEEETTSCEEEEETT---------------------------------TCC
T ss_pred eeeccCCCCCCCcEEEEEEeCC-CCcceEEEEeCCCeEEEEECC---------------------------------CCc
Confidence 32222 223445677777432 123689999999999999998 566
Q ss_pred eEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc-CCEEEEEeC
Q 003423 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGE 326 (821)
Q Consensus 248 ~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~l~s~~~ 326 (821)
....+.+|.+.|.+++|+|++++|++|+.||+|++||+.+++. . ....+...|.+++|+ +..+++++.
T Consensus 553 ~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~-----~------~~~~~~~~v~~~~~sp~~~~l~~~~ 621 (694)
T 3dm0_A 553 LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK-----L------YSLEANSVIHALCFSPNRYWLCAAT 621 (694)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE-----E------ECCBCSSCEEEEEECSSSSEEEEEE
T ss_pred EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce-----E------EEecCCCcEEEEEEcCCCcEEEEEc
Confidence 7788899999999999999999999999999999999998765 2 333456679999999 456666677
Q ss_pred CCeEEEEcC-CCceeeEeecccC------------------CCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 327 DCTCRVWGS-DGKQLKMIKEHIG------------------RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 327 dg~i~iwd~-~~~~~~~~~~h~~------------------~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
|+.|++||+ .++.+..+..+.. ..+++++|+|++++|++|+.||.|++|++.
T Consensus 622 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 622 EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 888999999 5666665543211 026889999999999999999999999984
No 59
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2e-30 Score=282.51 Aligned_cols=299 Identities=10% Similarity=0.073 Sum_probs=236.7
Q ss_pred CCCCCcceeecccee------eeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEec
Q 003423 2 GKKDLSEWRLDVGQY------LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (821)
Q Consensus 2 ~~~~i~~w~~~~~~~------~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~ 74 (821)
.|+.+++|++.+++. ...+....|+ |+ +.+|++|. ++.|++||+.+++.+..+..+.. .|.+++|+
T Consensus 76 ~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~--~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~~ 148 (420)
T 3vl1_A 76 LDGHDFLFNTIIRDGSKMLKRADYTAVDTAK--LQ----MRRFILGTTEGDIKVLDSNFNLQREIDQAHVS-EITKLKFF 148 (420)
T ss_dssp ETTEEEEEECCSEETTTTSCSCCEEEEEEEC--SS----SCEEEEEETTSCEEEECTTSCEEEEETTSSSS-CEEEEEEC
T ss_pred cCCcEEEEEecccceeeEEecCCceEEEEEe--cC----CCEEEEEECCCCEEEEeCCCcceeeecccccC-ccEEEEEC
Confidence 378899999998761 1334444677 77 56676665 89999999999998877665554 79999999
Q ss_pred cccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEE
Q 003423 75 FINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC 154 (821)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~ 154 (821)
|++ ..++++..|+.|++||+... +....+.+|.+.|++++|+| ++++|++|+
T Consensus 149 ~~~----------~~l~s~s~d~~i~iwd~~~~---------------~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~ 200 (420)
T 3vl1_A 149 PSG----------EALISSSQDMQLKIWSVKDG---------------SNPRTLIGHRATVTDIAIID---RGRNVLSAS 200 (420)
T ss_dssp TTS----------SEEEEEETTSEEEEEETTTC---------------CCCEEEECCSSCEEEEEEET---TTTEEEEEE
T ss_pred CCC----------CEEEEEeCCCeEEEEeCCCC---------------cCceEEcCCCCcEEEEEEcC---CCCEEEEEc
Confidence 763 25666667899999998743 34567789999999999999 999999999
Q ss_pred CCCcEEEEEccCCceeEEEccCc--ceeEEEEeec------------------cCCccCeEEEEEeeCCEEEEEEcccCC
Q 003423 155 SDNSIRVWDISNSSIILEVHSPE--RCLLYSMKLW------------------GDNLEALRIASGTIYNEIIVWKVDWEH 214 (821)
Q Consensus 155 ~d~~i~iwd~~~~~~~~~~~~~~--~~~~~s~~~~------------------~~s~~~~~l~sg~~dg~i~vwd~~~~~ 214 (821)
.|+.|++||+.+++.+..+..+. ...+.++.+. ..++++.+|++|+.||.|++||+.
T Consensus 201 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~--- 277 (420)
T 3vl1_A 201 LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVF--- 277 (420)
T ss_dssp TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETT---
T ss_pred CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECC---
Confidence 99999999999999988887532 2334444442 235789999999999999999998
Q ss_pred cccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE-ecCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEecccCcccC
Q 003423 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKD 292 (821)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~I~~l~~s~~~~-~l~s~s~Dg~i~iwd~~~~~~~~ 292 (821)
.......+ .+|...|.+++|+|+++ +|++++.||.|++||+++++.
T Consensus 278 ------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~-- 325 (420)
T 3vl1_A 278 ------------------------------SKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC-- 325 (420)
T ss_dssp ------------------------------TCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--
T ss_pred ------------------------------CCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC--
Confidence 33334443 46899999999999998 999999999999999988643
Q ss_pred CCCceeeeceEEec-cceeEEEEEEc-CCEEEEEeCCCeEEEEcCCC----------ceeeEeecccCCCeEEEEEecCC
Q 003423 293 SDSIEEVGSSVLYG-HNARVWDCCLT-DSFIITAGEDCTCRVWGSDG----------KQLKMIKEHIGRGIWRCLYDSLS 360 (821)
Q Consensus 293 ~~~~~~~~~~~~~~-h~~~i~~v~~~-~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~h~~~~i~~l~~~~~~ 360 (821)
.. ..+.+ |...|.++.+. +.+|++++.|+.|++|++.. .....+..|.+ .|.+++|+|++
T Consensus 326 ---~~----~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~ 397 (420)
T 3vl1_A 326 ---PV----GEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDD-AVSQFCYVSDD 397 (420)
T ss_dssp ---CS----EEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSC-CCCEEEEECCS
T ss_pred ---ch----hhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCc-ceEEEEEccCC
Confidence 11 34444 78889999887 56899999999999999832 22334556666 69999999999
Q ss_pred C---EEEEEeCCCcEEEEEcC
Q 003423 361 S---LLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 361 ~---~l~tg~~dg~I~iwd~~ 378 (821)
. .+++.+.+|.+.+|+++
T Consensus 398 ~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 398 ESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp SSSCEEEEEETTTEEEEEESC
T ss_pred CCcceEEEEcCCceEEEEecc
Confidence 9 78888889999999985
No 60
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-32 Score=299.72 Aligned_cols=304 Identities=12% Similarity=0.033 Sum_probs=213.4
Q ss_pred CCCCCcceeeccce-----------eeeeeEEEEEeccCC-CC-CCcceEEeec-CCeEEEEECCCCee-----------
Q 003423 2 GKKDLSEWRLDVGQ-----------YLGEISALCFVHLPS-HL-SSLPFLLAGS-GSQVLLYDLEAGTL----------- 56 (821)
Q Consensus 2 ~~~~i~~w~~~~~~-----------~~~~Vt~l~~~~~p~-~~-~~~~~l~~g~-~~~i~iwd~~t~~~----------- 56 (821)
.|++|++|++.+++ |.+.|.+++|+ |+ .. +.+.+||+++ |++|+|||+.+++.
T Consensus 181 ~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~ws--p~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p 258 (524)
T 2j04_B 181 HSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWH--EGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKP 258 (524)
T ss_dssp -CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEEC--SSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSC
T ss_pred CCceEEEEEccCCCCCceEEEEEEecCCcEEEEEEC--CCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCc
Confidence 57889999998764 24679999999 75 00 0135777665 89999999987642
Q ss_pred eeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEE
Q 003423 57 IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVF 136 (821)
Q Consensus 57 ~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 136 (821)
...+..+. ..|.+++|++. ..+++++.|++|++||+.... .+...+.+|.+.|+
T Consensus 259 ~~~l~~h~-~~v~sv~~s~~-----------~~lasgs~DgtV~lWD~~~~~--------------~~~~~~~~H~~~V~ 312 (524)
T 2j04_B 259 SLTLSLAD-SLITTFDFLSP-----------TTVVCGFKNGFVAEFDLTDPE--------------VPSFYDQVHDSYIL 312 (524)
T ss_dssp SEEECCTT-TCEEEEEESSS-----------SEEEEEETTSEEEEEETTBCS--------------SCSEEEECSSSCEE
T ss_pred eEEEEcCC-CCEEEEEecCC-----------CeEEEEeCCCEEEEEECCCCC--------------CceEEeecccccEE
Confidence 12444443 47999999853 246666779999999997542 23456789999999
Q ss_pred EE--EEeecCCCC-CEEEEEECCCcEEEEEccCCceeEEEccCcc-eeEEEEeeccCCccCeEEEEEeeCCEEEEEEccc
Q 003423 137 DV--CFLKVCNGN-RSLAIGCSDNSIRVWDISNSSIILEVHSPER-CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (821)
Q Consensus 137 ~~--~~~~~~~~~-~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~ 212 (821)
++ +|+| ++ .+||||+.|++|+|||+.+++.+..+..+.. ..+++++| +|++..+++++.|+.|++||++
T Consensus 313 sv~~~~s~---~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~f---sp~~~~l~s~~~d~tv~lwd~~- 385 (524)
T 2j04_B 313 SVSTAYSD---FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVY---CPQIYSYIYSDGASSLRAVPSR- 385 (524)
T ss_dssp EEEEECCT---TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEE---ETTTTEEEEECSSSEEEEEETT-
T ss_pred EEEEEcCC---CCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEe---CCCcCeEEEeCCCCcEEEEECc-
Confidence 99 5666 77 8999999999999999998877655554432 12345555 4778889999999999999998
Q ss_pred CCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccC
Q 003423 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (821)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~ 292 (821)
....+..+.+|.+.|++|+|+|++++|+||+.|++|++||+.....
T Consensus 386 --------------------------------~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~-- 431 (524)
T 2j04_B 386 --------------------------------AAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLL-- 431 (524)
T ss_dssp --------------------------------CTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTT--
T ss_pred --------------------------------ccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhc--
Confidence 4455567789999999999999999999999999999999876422
Q ss_pred CCCceeeeceEEeccceeEEEEEEcC-CEEEEEeCCCeEEEEcCCCceeeEeecccCCCeEEEEEecCCC---EEEEEeC
Q 003423 293 SDSIEEVGSSVLYGHNARVWDCCLTD-SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSS---LLVTAGF 368 (821)
Q Consensus 293 ~~~~~~~~~~~~~~h~~~i~~v~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~---~l~tg~~ 368 (821)
..........+...|++++|++ ..++....+..+..|+.++.++.++.+|.. .|++++|+|++. .+++|+.
T Consensus 432 ----~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~-~V~~Vafsp~~~~~~~lAsg~~ 506 (524)
T 2j04_B 432 ----HGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGI-NITCTKWNETSAGGKCYAFSNS 506 (524)
T ss_dssp ----TCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCC-SCCCEEECCSTTTTTEEEEECT
T ss_pred ----cccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCc-eEEEEECCCCCCccHHHHhhcc
Confidence 1000000012234688999983 223333222223223335788889999998 699999999964 9999999
Q ss_pred CCcEEEEEcCC
Q 003423 369 DSAIKVHQFQA 379 (821)
Q Consensus 369 dg~I~iwd~~~ 379 (821)
||.|++|+++.
T Consensus 507 ~g~vrlw~l~~ 517 (524)
T 2j04_B 507 AGLLTLEYLSL 517 (524)
T ss_dssp TSEEEEEECSC
T ss_pred CceEEEEEccc
Confidence 99999999965
No 61
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.2e-30 Score=279.89 Aligned_cols=291 Identities=15% Similarity=0.162 Sum_probs=232.4
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEee-cCCeEEEEECCCCe------eeeEEEeeccccEEeEEeccccCCCCCCcccee
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAG-SGSQVLLYDLEAGT------LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVT 88 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g-~~~~i~iwd~~t~~------~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~ 88 (821)
|.++|++++|+ |+ +|++| .|+.|+|||+.+++ .+..+..+.. .|.++.|+++. ..++....
T Consensus 15 h~~~i~~~~~~--~~------~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~---~~~g~~~~ 82 (397)
T 1sq9_A 15 HDADIFSVSAC--NS------FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS-GLHHVDVLQAI---ERDAFELC 82 (397)
T ss_dssp SSSCEEEEEEC--SS------EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTT-CEEEEEEEEEE---ETTTEEEE
T ss_pred hhcCeEEEEec--CC------eEEEEcCCCEEEEEECCCcccccCCCcceEEecCCC-cEEEEEEeccc---ccCCcccc
Confidence 78999999999 64 55555 58999999999988 7777876555 79999999541 00120001
Q ss_pred eEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCC-----CCcEEEEEEe----ecCCCCCE-EEEEECCCc
Q 003423 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL-----SHWVFDVCFL----KVCNGNRS-LAIGCSDNS 158 (821)
Q Consensus 89 ~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~I~~~~~~----~~~~~~~~-l~t~~~d~~ 158 (821)
.++++..++.|++|++...... .......+.+| ...|.+++|+ | ++++ |++|+.||.
T Consensus 83 ~l~s~~~dg~i~iw~~~~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~l~~~~~dg~ 149 (397)
T 1sq9_A 83 LVATTSFSGDLLFYRITREDET----------KKVIFEKLDLLDSDMKKHSFWALKWGASNDR---LLSHRLVATDVKGT 149 (397)
T ss_dssp EEEEEETTSCEEEEEEEECTTT----------CCEEEEEECCSCTTGGGSCEEEEEEECCC-------CEEEEEEETTSC
T ss_pred EEEEEcCCCCEEEEEccCCccc----------ccccceeecccccccCCCcEEEEEEeeccCC---CCceEEEEEeCCCc
Confidence 4555566899999999865310 01226677788 5899999999 8 9999 999999999
Q ss_pred EEEEEccC------CceeE-----EEcc------CcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCC
Q 003423 159 IRVWDISN------SSIIL-----EVHS------PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNS 221 (821)
Q Consensus 159 i~iwd~~~------~~~~~-----~~~~------~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 221 (821)
|++||+.+ ++.+. .+.. .+...+.++.+ ++++ ++++|+.||.|++||+.
T Consensus 150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~-~l~~~~~dg~i~i~d~~---------- 215 (397)
T 1sq9_A 150 TYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI---SERG-LIATGFNNGTVQISELS---------- 215 (397)
T ss_dssp EEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEE---CTTS-EEEEECTTSEEEEEETT----------
T ss_pred EEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEE---CCCc-eEEEEeCCCcEEEEECC----------
Confidence 99999998 66555 5532 22334566666 5778 99999999999999998
Q ss_pred CCCcccCCCCCCcceeeecccccceeeEEEEec---C---CCcEEEEEEcCCCCEEEEEeCC---CeEEEEecccCcccC
Q 003423 222 PEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG---H---EGSIFRIEWSSCGSKLVSVSDD---RSARIWEVRAEYWKD 292 (821)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h---~~~I~~l~~s~~~~~l~s~s~D---g~i~iwd~~~~~~~~ 292 (821)
..+.+..+.+ | ...|.+++|+|++++|++++.| +.|++||+.+++.
T Consensus 216 -----------------------~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~-- 270 (397)
T 1sq9_A 216 -----------------------TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER-- 270 (397)
T ss_dssp -----------------------TTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE--
T ss_pred -----------------------CCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc--
Confidence 5677788888 9 9999999999999999999999 9999999988654
Q ss_pred CCCceeeeceEEec-------------cceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEee------cc----
Q 003423 293 SDSIEEVGSSVLYG-------------HNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIK------EH---- 346 (821)
Q Consensus 293 ~~~~~~~~~~~~~~-------------h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~------~h---- 346 (821)
. ..+.+ |...|.+++|+ +.+|++++.||.|++||+ .++.+..+. .|
T Consensus 271 ---~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 342 (397)
T 1sq9_A 271 ---I-----GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI 342 (397)
T ss_dssp ---E-----EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGC
T ss_pred ---c-----ceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhh
Confidence 3 45666 99999999998 589999999999999999 788888888 77
Q ss_pred -----------cCCCeEEEEEecCC----------CEEEEEeCCCcEEEEEcCC
Q 003423 347 -----------IGRGIWRCLYDSLS----------SLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 347 -----------~~~~i~~l~~~~~~----------~~l~tg~~dg~I~iwd~~~ 379 (821)
.. .|++++|+|++ ++|++++.||.|++|++++
T Consensus 343 ~~g~~~~~~~~~~-~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 343 LAVDEHGDSLAEP-GVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp CCBCTTSCBCSSC-CEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred hccccccccccCC-ceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 66 69999999998 7999999999999999853
No 62
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-31 Score=291.80 Aligned_cols=318 Identities=12% Similarity=0.101 Sum_probs=223.8
Q ss_pred EEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecC---CCCCEEEEEECCCcEEEEEccCCc
Q 003423 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC---NGNRSLAIGCSDNSIRVWDISNSS 168 (821)
Q Consensus 92 ~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~---~~~~~l~t~~~d~~i~iwd~~~~~ 168 (821)
....|+.|+||++..+.. .......+.+|.+.|.+++|+|.. +++.+||+|+.||+|++||+.++.
T Consensus 178 S~s~D~tI~iWd~~~~~~-----------~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~ 246 (524)
T 2j04_B 178 KEKHSSCIQIFKMNTSTL-----------HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNA 246 (524)
T ss_dssp ----CEEEEEEEEETTTC-----------CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCS
T ss_pred cCCCCceEEEEEccCCCC-----------CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCc
Confidence 345689999999875420 112234567788999999999920 125799999999999999998764
Q ss_pred e-----------eEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCccee
Q 003423 169 I-----------ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF 237 (821)
Q Consensus 169 ~-----------~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (821)
. ...+..+. ..+.+++|. ++ ..|++|+.||+|++||+.+
T Consensus 247 ~~~~~~~~~~~p~~~l~~h~-~~v~sv~~s---~~-~~lasgs~DgtV~lWD~~~------------------------- 296 (524)
T 2j04_B 247 TDVHVFKMCEKPSLTLSLAD-SLITTFDFL---SP-TTVVCGFKNGFVAEFDLTD------------------------- 296 (524)
T ss_dssp SSSSEEECCCSCSEEECCTT-TCEEEEEES---SS-SEEEEEETTSEEEEEETTB-------------------------
T ss_pred cccccceeecCceEEEEcCC-CCEEEEEec---CC-CeEEEEeCCCEEEEEECCC-------------------------
Confidence 2 12444443 457788774 33 4799999999999999981
Q ss_pred eecccccceeeEEEEecCCCcEEEE--EEcCCC-CEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccce--eEE
Q 003423 238 KLQDQQHTAVNLFRLVGHEGSIFRI--EWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA--RVW 312 (821)
Q Consensus 238 ~~~~~~~~~~~~~~~~~h~~~I~~l--~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~--~i~ 312 (821)
...+...+.+|.+.|.+| +|+|++ ++||||+.|++|+|||+++++. . ..+.+|.. .|+
T Consensus 297 -------~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~-----~-----~~~~~~~~~~~v~ 359 (524)
T 2j04_B 297 -------PEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT-----T-----KTTVSRFRGSNLV 359 (524)
T ss_dssp -------CSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH-----H-----CEEEEECSCCSCC
T ss_pred -------CCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc-----c-----cccccccccCccc
Confidence 113445678999999999 578887 8999999999999999998654 3 35556653 488
Q ss_pred EEEEcC--CEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCc
Q 003423 313 DCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHP 389 (821)
Q Consensus 313 ~v~~~~--~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~ 389 (821)
+++|+| ..+++++.|++|++||+ .+.++.++.+|.+ .|++++|+|++++|++|+.||+|++||+....+.......
T Consensus 360 ~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~-~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~ 438 (524)
T 2j04_B 360 PVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET-TITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSS 438 (524)
T ss_dssp CEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSS-CEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC----
T ss_pred ceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCC-ceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCc
Confidence 999994 68999999999999999 6777888999998 6999999999999999999999999998554322211000
Q ss_pred cccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCC-cceeeEeeeccCCcceE
Q 003423 390 EAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMD-SVNWNKILQVSEGMPII 468 (821)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~-~~~~~~~~~~~~~~~i~ 468 (821)
...+...+.+++|+|++..+.....-. ++... +......+ ..+...+.
T Consensus 439 -------------------------~~~~~~~v~~v~~sp~g~~~~~~~~~~-----~~~~~~~g~~~~~l-~gh~~~V~ 487 (524)
T 2j04_B 439 -------------------------ATQKSLRLWKWDYSIKDDKYRIDSSYE-----VYPLTVNDVSKAKI-DAHGINIT 487 (524)
T ss_dssp ---------------------------CCCCEEEECBCCSSSCEEEECCCCC-----CCC--------------CCCSCC
T ss_pred -------------------------cceeeeEEEEeccCCCCCeEEccCCce-----ecccccCCcceeee-cCCCceEE
Confidence 000112367888999887554322111 11111 11111112 22356788
Q ss_pred EEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCC
Q 003423 469 CMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGD 504 (821)
Q Consensus 469 ~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~ 504 (821)
++++.++. +.+.++|+|+.+|.|+||++...
T Consensus 488 ~Vafsp~~-----~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 488 CTKWNETS-----AGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CEEECCST-----TTTTEEEEECTTSEEEEEECSCC
T ss_pred EEECCCCC-----CccHHHHhhccCceEEEEEcccc
Confidence 88887764 33579999999999999998764
No 63
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.98 E-value=4.1e-30 Score=276.17 Aligned_cols=287 Identities=12% Similarity=0.144 Sum_probs=220.8
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEe-eccccEEeEEeccccCCCCCCccceeeEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQV-FHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~-~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~ 93 (821)
|.++|++++|+ |+ +..+|++|. |+.|+|||+.+++....+.. .+...|.+++|+|.. + ..++++
T Consensus 72 h~~~v~~~~~~--~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~------~---~~l~s~ 137 (383)
T 3ei3_B 72 FDRRVTSLEWH--PT---HPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFN------T---NQLFVS 137 (383)
T ss_dssp CSSCEEEEEEC--SS---CTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTE------E---EEEEEE
T ss_pred CCCCEEEEEEC--CC---CCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCC------C---CEEEEE
Confidence 67899999999 98 326777766 89999999999988877763 244589999999631 0 245556
Q ss_pred EcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEE
Q 003423 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (821)
Q Consensus 94 ~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~ 173 (821)
..|+.|++||+.... ........+|...|.+++|+| ++++|++|+.|+.|++||+ +++.+..+
T Consensus 138 ~~d~~i~iwd~~~~~-------------~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~i~d~-~~~~~~~~ 200 (383)
T 3ei3_B 138 SIRGATTLRDFSGSV-------------IQVFAKTDSWDYWYCCVDVSV---SRQMLATGDSTGRLLLLGL-DGHEIFKE 200 (383)
T ss_dssp ETTTEEEEEETTSCE-------------EEEEECCCCSSCCEEEEEEET---TTTEEEEEETTSEEEEEET-TSCEEEEE
T ss_pred eCCCEEEEEECCCCc-------------eEEEeccCCCCCCeEEEEECC---CCCEEEEECCCCCEEEEEC-CCCEEEEe
Confidence 678999999987321 233444455668999999999 9999999999999999999 56777777
Q ss_pred ccCcceeEEEEeeccCCccCe-EEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE
Q 003423 174 HSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (821)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (821)
..+.. .+.++++ ++++. ++++|+.|+.|++||+.... .....+..+
T Consensus 201 ~~h~~-~v~~~~~---~~~~~~~l~s~~~d~~i~iwd~~~~~-----------------------------~~~~~~~~~ 247 (383)
T 3ei3_B 201 KLHKA-KVTHAEF---NPRCDWLMATSSVDATVKLWDLRNIK-----------------------------DKNSYIAEM 247 (383)
T ss_dssp ECSSS-CEEEEEE---CSSCTTEEEEEETTSEEEEEEGGGCC-----------------------------STTCEEEEE
T ss_pred ccCCC-cEEEEEE---CCCCCCEEEEEeCCCEEEEEeCCCCC-----------------------------cccceEEEe
Confidence 76654 4667777 56777 99999999999999998210 013445554
Q ss_pred ecCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEecc-------c----------eeEEEE
Q 003423 253 VGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH-------N----------ARVWDC 314 (821)
Q Consensus 253 ~~h~~~I~~l~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h-------~----------~~i~~v 314 (821)
+|.+.|.+++|+| ++++|++++.|+.|++||++++.. .. .+.+| . ..+..+
T Consensus 248 -~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 316 (383)
T 3ei3_B 248 -PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK-----PD-----QIIIHPHRQFQHLTPIKATWHPMYDLIVA 316 (383)
T ss_dssp -ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS-----CS-----EEEECCBCCCTTSCCCCCEECSSSSEEEE
T ss_pred -cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc-----cc-----ccccccccccccccceEEeccCCCCceEE
Confidence 7999999999999 999999999999999999998765 32 22222 2 233445
Q ss_pred EEc-CCEEEEEeCCCeEEEEcC-CCceeeEeeccc-CCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 315 CLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHI-GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 315 ~~~-~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~-~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
+|+ +..+ +++.|+.|++||+ +++.+..+.++. ...+..++|+|++++|++|+ ||.|++||+++
T Consensus 317 ~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 317 GRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 555 2233 7789999999999 788889988743 22577779999999999997 99999999853
No 64
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.98 E-value=6.5e-29 Score=265.19 Aligned_cols=314 Identities=13% Similarity=0.149 Sum_probs=237.2
Q ss_pred cceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEee
Q 003423 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (821)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (821)
......+.+|.+.|++++|+| ++++|++|+.||.|++||+.+++.+..+..+.. .+.++++ ++++.+|++++.
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~---~~~~~~l~s~~~ 94 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNK---EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTG-TIWSIDV---DCFTKYCVTGSA 94 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECT---TSCEEEEEESSSCEEEEETTTCCEEEEECCCSS-CEEEEEE---CTTSSEEEEEET
T ss_pred ccccEEEEEeeceEEEEEEcC---CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCC-cEEEEEE---cCCCCEEEEEeC
Confidence 445667899999999999999 999999999999999999999999988887665 4667777 578999999999
Q ss_pred CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCC----
Q 003423 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD---- 277 (821)
Q Consensus 202 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~D---- 277 (821)
||.|++||+. ..+.+..+. |...|.+++|+|++++|++++.+
T Consensus 95 dg~i~iwd~~---------------------------------~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~ 140 (369)
T 3zwl_B 95 DYSIKLWDVS---------------------------------NGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKN 140 (369)
T ss_dssp TTEEEEEETT---------------------------------TCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTB
T ss_pred CCeEEEEECC---------------------------------CCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCC
Confidence 9999999998 556666666 89999999999999999999999
Q ss_pred -CeEEEEecccCcccCCCCc-eeeeceEEeccce--eEEEEEEc--CCEEEEEeCCCeEEEEcC-C-CceeeEeecccCC
Q 003423 278 -RSARIWEVRAEYWKDSDSI-EEVGSSVLYGHNA--RVWDCCLT--DSFIITAGEDCTCRVWGS-D-GKQLKMIKEHIGR 349 (821)
Q Consensus 278 -g~i~iwd~~~~~~~~~~~~-~~~~~~~~~~h~~--~i~~v~~~--~~~l~s~~~dg~i~iwd~-~-~~~~~~~~~h~~~ 349 (821)
+.|++||+........... .......+..|.. .+.+++|+ +.++++++.||.|++||+ . ++.+..+..|..
T Consensus 141 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~- 219 (369)
T 3zwl_B 141 PGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEK- 219 (369)
T ss_dssp CCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSS-
T ss_pred CCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCC-
Confidence 9999999987653100000 0000135556666 89999998 579999999999999999 3 678888998888
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeec
Q 003423 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTS 429 (821)
Q Consensus 350 ~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~ 429 (821)
.|.+++|+|++++|++++.||.|++||+..... +... . +...+.+++|+|
T Consensus 220 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-----------------~~~~------------~-~~~~~~~~~~~~ 269 (369)
T 3zwl_B 220 SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV-----------------LKKY------------E-TDCPLNTAVITP 269 (369)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----------------EEEE------------E-CSSCEEEEEECS
T ss_pred ceeEEEECCCCCEEEEecCCceEEEEECCCCce-----------------eeee------------c-CCCCceeEEecC
Confidence 699999999999999999999999999854200 0000 0 122344455554
Q ss_pred CCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCc
Q 003423 430 EDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQ 509 (821)
Q Consensus 430 ~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~ 509 (821)
++ .++++++.++...+|....
T Consensus 270 ~~-----------------------------------------------------~~l~~~~~~~~~~~~~~~~------ 290 (369)
T 3zwl_B 270 LK-----------------------------------------------------EFIILGGGQEAKDVTTTSA------ 290 (369)
T ss_dssp SS-----------------------------------------------------SEEEEEECCC---------------
T ss_pred CC-----------------------------------------------------ceEEEeecCCCceEEEEec------
Confidence 44 4444444444444433211
Q ss_pred ceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEee
Q 003423 510 LSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDAS 589 (821)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s 589 (821)
......+++||.... +....+ ..|...|++++|+
T Consensus 291 -------------------------------~~~~~~i~~~d~~~~--------------~~~~~~-~~~~~~v~~~~~s 324 (369)
T 3zwl_B 291 -------------------------------NEGKFEARFYHKIFE--------------EEIGRV-QGHFGPLNTVAIS 324 (369)
T ss_dssp -----------------------------------CEEEEEETTTC--------------CEEEEE-ECCSSCEEEEEEC
T ss_pred -------------------------------CCCcceeEEEecCCC--------------cchhhe-ecccCcEEEEEEC
Confidence 111235788887766 444454 6789999999999
Q ss_pred cCCCEEEEEcCCCcEEEEecCcc
Q 003423 590 FEDEVLFCGDLRGNLVLFPLLRD 612 (821)
Q Consensus 590 ~~~~~L~sgs~dG~i~iw~~~~~ 612 (821)
|++++|++|+.||.|++|++...
T Consensus 325 ~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 325 PQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp TTSSEEEEEETTSEEEEEEECHH
T ss_pred CCCCEEEEEcCCCeEEEEECccc
Confidence 99999999999999999999854
No 65
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.98 E-value=1.3e-29 Score=269.38 Aligned_cols=209 Identities=13% Similarity=0.273 Sum_probs=166.1
Q ss_pred eeeccCCCCcEEEEEEeecCCCCCEE-EEEEC---CCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEe
Q 003423 125 VQSLPRLSHWVFDVCFLKVCNGNRSL-AIGCS---DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (821)
Q Consensus 125 ~~~~~~h~~~I~~~~~~~~~~~~~~l-~t~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (821)
.+.+.+|.+.|++++|+| ++..+ ++|+. |+.|++||+.+++........+...+.+++|.+.++++.+|++|+
T Consensus 11 ~~~~~~h~~~v~~~~~~p---~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 87 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVP---CSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGD 87 (357)
T ss_dssp EEEEEECSSCEEEEEECT---TSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEE
T ss_pred hhhccCCCCceEEEEEcC---CCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEec
Confidence 445578999999999999 88655 55655 899999999998876554434455678888855444479999999
Q ss_pred eCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccccccee-eEEEEecCCCcEEEEE------EcCCCCEEEE
Q 003423 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV-NLFRLVGHEGSIFRIE------WSSCGSKLVS 273 (821)
Q Consensus 201 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~I~~l~------~s~~~~~l~s 273 (821)
.||.|++||+. ... .+..+.+|.+.|.+++ |+|++++|++
T Consensus 88 ~dg~i~iwd~~---------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~ 134 (357)
T 3i2n_A 88 FGGNLHIWNLE---------------------------------APEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVT 134 (357)
T ss_dssp TTSCEEEECTT---------------------------------SCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEE
T ss_pred CCCeEEEEeCC---------------------------------CCCccEEEEEecccceEEEeeccccccCCCccEEEE
Confidence 99999999998 333 6677889999999995 4689999999
Q ss_pred EeCCCeEEEEecccCcccCCCCceeeeceEEeccc----eeEEEEEE----c--CCEEEEEeCCCeEEEEcCCCceeeEe
Q 003423 274 VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN----ARVWDCCL----T--DSFIITAGEDCTCRVWGSDGKQLKMI 343 (821)
Q Consensus 274 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~----~~i~~v~~----~--~~~l~s~~~dg~i~iwd~~~~~~~~~ 343 (821)
++.|+.|++||+.++... . ..+..|. ..|++++| + +.++++++.||.|++||+........
T Consensus 135 ~~~d~~i~vwd~~~~~~~----~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 205 (357)
T 3i2n_A 135 GSRDGTVKVWDPRQKDDP----V-----ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE 205 (357)
T ss_dssp EETTSCEEEECTTSCSSC----S-----EEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred EeCCCeEEEEeCCCCCCc----c-----eeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee
Confidence 999999999999987520 2 3444443 37899884 3 68999999999999999954444555
Q ss_pred ecccCCCeEEEEEec---CCCEEEEEeCCCcEEEEEcCC
Q 003423 344 KEHIGRGIWRCLYDS---LSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 344 ~~h~~~~i~~l~~~~---~~~~l~tg~~dg~I~iwd~~~ 379 (821)
..|.. .|.+++|+| ++.+|++++.||.|++||++.
T Consensus 206 ~~~~~-~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 243 (357)
T 3i2n_A 206 TNIKN-GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243 (357)
T ss_dssp EECSS-CEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred cCCCC-ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence 66776 699999999 899999999999999999853
No 66
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.98 E-value=1.3e-30 Score=278.00 Aligned_cols=326 Identities=11% Similarity=0.138 Sum_probs=236.9
Q ss_pred eeeeeeEEEEEeccCCCC-CCcceEEeecCCeEEEEECCCCeeeeEEEeec----cccEEeEEeccccCCCCCCccceee
Q 003423 15 QYLGEISALCFVHLPSHL-SSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFH----GIRLHGISCNFINCTEGSVSTRVTF 89 (821)
Q Consensus 15 ~~~~~Vt~l~~~~~p~~~-~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~----~~~i~~i~~~~~~~~~~~~~~~~~~ 89 (821)
.|.++|++++|+ |+.- +...+++++.++.|++||+.+++.+..++.+. ...|.+++|+++.- .++ ..
T Consensus 16 ~h~~~v~~i~~~--p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~---~~ 87 (366)
T 3k26_A 16 DHNQPLFGVQFN--WHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSN---TSH---PL 87 (366)
T ss_dssp TTCSCEEEEEEC--TTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTT---TCC---EE
T ss_pred CCCCceEEEEEe--cccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCC---CCC---CE
Confidence 378899999999 7200 12336666668899999999998888887654 25699999997630 001 24
Q ss_pred EEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce
Q 003423 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (821)
Q Consensus 90 ~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~ 169 (821)
++++..++.|++|++... +.+..+.+|.+.|.+++|+| .++++|++|+.||.|++||+.+++.
T Consensus 88 l~~~~~dg~i~v~d~~~~---------------~~~~~~~~~~~~i~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~ 150 (366)
T 3k26_A 88 LAVAGSRGIIRIINPITM---------------QCIKHYVGHGNAINELKFHP--RDPNLLLSVSKDHALRLWNIQTDTL 150 (366)
T ss_dssp EEEEETTCEEEEECTTTC---------------CEEEEEESCCSCEEEEEECS--SCTTEEEEEETTSCEEEEETTTTEE
T ss_pred EEEecCCCEEEEEEchhc---------------eEeeeecCCCCcEEEEEECC--CCCCEEEEEeCCCeEEEEEeecCeE
Confidence 566667899999998743 46777889999999999998 2678999999999999999999998
Q ss_pred eEEEc--cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccccccee
Q 003423 170 ILEVH--SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (821)
Q Consensus 170 ~~~~~--~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (821)
+..+. ..+...+.++.+ ++++.+|++++.||.|++||+........... ...+.+........ .......
T Consensus 151 ~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~ 222 (366)
T 3k26_A 151 VAIFGGVEGHRDEVLSADY---DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE--SYDYNPNKTNRPFI---SQKIHFP 222 (366)
T ss_dssp EEEECSTTSCSSCEEEEEE---CTTSSEEEEEETTSCEEEEESCSHHHHHHHHH--HHTCCGGGCSSCCC---CEEECCC
T ss_pred EEEecccccccCceeEEEE---CCCCCEEEEecCCCCEEEEECCCCccccccce--eEEecCCCCccccc---ceeeccC
Confidence 88873 233445778877 57889999999999999999984321100000 00000000000000 0000123
Q ss_pred eEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCccc------CCCCceeeeceEEeccceeEEEEEEc----
Q 003423 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK------DSDSIEEVGSSVLYGHNARVWDCCLT---- 317 (821)
Q Consensus 248 ~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~~h~~~i~~v~~~---- 317 (821)
......+|...|.+++|+ +++|++++.|+.|++||+.+.... .......+ ..+.+|...|++++|+
T Consensus 223 ~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~ 298 (366)
T 3k26_A 223 DFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTIL--GRFDYSQCDIWYMRFSMDFW 298 (366)
T ss_dssp SEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEE--EEEECSSCCSSCCCCEECTT
T ss_pred ccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchhee--ccccccCCcEEEEEEcCCCC
Confidence 345556799999999998 779999999999999999876431 00001112 5778899999999887
Q ss_pred CCEEEEEeCCCeEEEEcC-CCc----eeeEeecc--cCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 318 DSFIITAGEDCTCRVWGS-DGK----QLKMIKEH--IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 318 ~~~l~s~~~dg~i~iwd~-~~~----~~~~~~~h--~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
+.+|++++.||.|++||+ .++ ....+..| .. .|++++|+|++++|++++.||.|++||+.
T Consensus 299 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 299 QKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGA-AIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCS-CEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CcEEEEEecCCcEEEEECCCCCCccccceEEcccccCC-ceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 579999999999999999 443 34467777 45 69999999999999999999999999974
No 67
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.98 E-value=6.3e-31 Score=287.16 Aligned_cols=303 Identities=10% Similarity=0.143 Sum_probs=204.1
Q ss_pred ceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeC
Q 003423 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (821)
Q Consensus 123 ~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d 202 (821)
.......+|...|++++|+| .++++||+|+.||.|+|||+.++..
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P--~~~~~lasGs~dg~i~lWd~~~~~~--------------------------------- 154 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHP--THPSTVAVGSKGGDIMLWNFGIKDK--------------------------------- 154 (435)
T ss_dssp TSCCEEEECSSCEEEEEECS--SCTTCEEEEETTSCEEEECSSCCSC---------------------------------
T ss_pred eecccCCCCCCCEEEEEEeC--CCCCEEEEEeCCCEEEEEECCCCCc---------------------------------
Confidence 34455667888999999998 2456889999999999998754321
Q ss_pred CEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcC-CCCEEEEEeCCCeEE
Q 003423 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSAR 281 (821)
Q Consensus 203 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~-~~~~l~s~s~Dg~i~ 281 (821)
.....+.+|.+.|++|+|+| ++++|+||+.||+|+
T Consensus 155 --------------------------------------------~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 155 --------------------------------------------PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp --------------------------------------------CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred --------------------------------------------eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 11223358999999999998 688999999999999
Q ss_pred EEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcCCCceeeEeecccCCCeEEEEEecC
Q 003423 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSL 359 (821)
Q Consensus 282 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~ 359 (821)
+||++.... ..+ .....+...+.+++|+ +.+|++|+.||.|++||++++.+..+.+|.. .|.+++|+|+
T Consensus 191 iwd~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~-~v~~v~~~p~ 261 (435)
T 4e54_B 191 LQDFKGNIL------RVF--ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKK-KVTHVALNPC 261 (435)
T ss_dssp EEETTSCEE------EEE--ECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSS-CEEEEEECTT
T ss_pred EeeccCCce------eEE--eccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccc-eEEeeeecCC
Confidence 999986543 111 1122234457788887 5799999999999999999889999999998 6999999998
Q ss_pred CC-EEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEec
Q 003423 360 SS-LLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN 438 (821)
Q Consensus 360 ~~-~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~ 438 (821)
+. ++++|+.|+.|++||++..... ........|...|.+++|+|++.+|++
T Consensus 262 ~~~~~~s~s~d~~v~iwd~~~~~~~--------------------------~~~~~~~~h~~~v~~~~~spdg~~l~s-- 313 (435)
T 4e54_B 262 CDWFLATASVDQTVKIWDLRQVRGK--------------------------ASFLYSLPHRHPVNAACFSPDGARLLT-- 313 (435)
T ss_dssp CSSEEEEEETTSBCCEEETTTCCSS--------------------------SCCSBCCBCSSCEEECCBCTTSSEEEE--
T ss_pred CceEEEEecCcceeeEEeccccccc--------------------------ceEEEeeeccccccceeECCCCCeeEE--
Confidence 75 7889999999999999542100 001111234556777777776644443
Q ss_pred CCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCC----------
Q 003423 439 HGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP---------- 508 (821)
Q Consensus 439 ~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~---------- 508 (821)
++.||.|++|++.+.....
T Consensus 314 ---------------------------------------------------~~~D~~i~iwd~~~~~~~~~~~~~~~~~~ 342 (435)
T 4e54_B 314 ---------------------------------------------------TDQKSEIRVYSASQWDCPLGLIPHPHRHF 342 (435)
T ss_dssp ---------------------------------------------------EESSSCEEEEESSSSSSEEEECCCCCCCC
T ss_pred ---------------------------------------------------EcCCCEEEEEECCCCccceEEeccccccc
Confidence 3333333333333221100
Q ss_pred --cceeEEeeccCccceeeeeEEeecCCCeEEEE-ECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEE
Q 003423 509 --QLSFTFTWSAGIERQLLGTYWCKSLGHRFIFT-ADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMC 585 (821)
Q Consensus 509 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 585 (821)
.......|++.... +....++++.++++ +..++.|++||...+ ++...+..+|...|.+
T Consensus 343 ~~~~~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g--------------~~~~~l~~~~~~~v~s 404 (435)
T 4e54_B 343 QHLTPIKAAWHPRYNL----IVVGRYPDPNFKSCTPYELRTIDVFDGNSG--------------KMMCQLYDPESSGISS 404 (435)
T ss_dssp SSSCCCBCEECSSSSC----EEEECCCCTTSCCSSTTCCCCEEEECSSSC--------------CEEEEECCSSCCCCCC
T ss_pred ccceeEEEEEcCCCCE----EEEEEcCCCCeEEEEecCCCEEEEEECCCC--------------cEEEEEeCCCCCcEEE
Confidence 00011222222111 11123344444433 334567999998877 4455544678888988
Q ss_pred E-EeecCCCEEEEEcCCCcEEEEecCc
Q 003423 586 L-DASFEDEVLFCGDLRGNLVLFPLLR 611 (821)
Q Consensus 586 l-~~s~~~~~L~sgs~dG~i~iw~~~~ 611 (821)
+ +|+|++++|++|+ |+.|+||++..
T Consensus 405 ~~~fspdg~~lasg~-d~~i~iW~~~~ 430 (435)
T 4e54_B 405 LNEFNPMGDTLASAM-GYHILIWSQQE 430 (435)
T ss_dssp EEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred EEEECCCCCEEEEEc-CCcEEEEECCc
Confidence 7 6999999999987 78999999874
No 68
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.4e-30 Score=279.96 Aligned_cols=340 Identities=13% Similarity=0.110 Sum_probs=237.7
Q ss_pred EEECCCCeeeeEEEeeccccEEeEEecc-ccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceee
Q 003423 48 LYDLEAGTLIRPFQVFHGIRLHGISCNF-INCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQ 126 (821)
Q Consensus 48 iwd~~t~~~~~~~~~~~~~~i~~i~~~~-~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (821)
.|+ .+++++..+...+...|.+++|+| ++ ..+++++.|+.|++|++....... ..+...
T Consensus 47 ~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~----------~~l~s~s~dg~v~vwd~~~~~~~~---------~~~~~~ 106 (437)
T 3gre_A 47 MGN-LRGKLIATLMENEPNSITSSAVSPGET----------PYLITGSDQGVIKIWNLKEIIVGE---------VYSSSL 106 (437)
T ss_dssp GGG-CCCCEEEEECTTTTSCEEEEEEECSSS----------CEEEEEETTSEEEEEEHHHHHTTC---------CCSCSE
T ss_pred ccc-ccceEEeeeccCCCCceEEEEECCCCC----------CEEEEecCCceEEEeECcccccCc---------ccceee
Confidence 477 568888888444445899999997 53 245566678999999987521000 011122
Q ss_pred eccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEcc---CCceeEEEccC-----------cceeEEEEeeccCCcc
Q 003423 127 SLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS---NSSIILEVHSP-----------ERCLLYSMKLWGDNLE 192 (821)
Q Consensus 127 ~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~---~~~~~~~~~~~-----------~~~~~~s~~~~~~s~~ 192 (821)
.+ +|.+.|++++|+| ++++|++|+.||.|++||+. +++.+..+..+ ....+.++.+. .+++
T Consensus 107 ~~-~h~~~v~~~~~~~---~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~ 181 (437)
T 3gre_A 107 TY-DCSSTVTQITMIP---NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAF-VNEE 181 (437)
T ss_dssp EE-ECSSCEEEEEECT---TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEE-ECSS
T ss_pred ec-cCCCCEEEEEEeC---CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEE-EcCC
Confidence 22 4899999999999 99999999999999999995 55554433222 12223333322 2468
Q ss_pred CeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEec--CCCcEEEEEEcCCCCE
Q 003423 193 ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG--HEGSIFRIEWSSCGSK 270 (821)
Q Consensus 193 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~I~~l~~s~~~~~ 270 (821)
+.++++|+.||.|++||+. ..+.+..+.+ |.+.|.+++|+|++++
T Consensus 182 ~~~l~~~~~d~~i~iwd~~---------------------------------~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 228 (437)
T 3gre_A 182 KSLLVALTNLSRVIIFDIR---------------------------------TLERLQIIENSPRHGAVSSICIDEECCV 228 (437)
T ss_dssp CEEEEEEETTSEEEEEETT---------------------------------TCCEEEEEECCGGGCCEEEEEECTTSCE
T ss_pred CCEEEEEeCCCeEEEEeCC---------------------------------CCeeeEEEccCCCCCceEEEEECCCCCE
Confidence 9999999999999999998 6677888888 8999999999999999
Q ss_pred EEEEeCCCeEEEEecccCcccCCCCceeeeceEEe-ccceeEEEEEEcC------CEEEEEeCCCeEEEEcC-CCceeeE
Q 003423 271 LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY-GHNARVWDCCLTD------SFIITAGEDCTCRVWGS-DGKQLKM 342 (821)
Q Consensus 271 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~v~~~~------~~l~s~~~dg~i~iwd~-~~~~~~~ 342 (821)
|++|+.||+|++||++.++. . ..+. +|..+|.+++|++ .+|++++.||+|++||+ .++++..
T Consensus 229 l~s~~~dg~i~iwd~~~~~~-----~-----~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 298 (437)
T 3gre_A 229 LILGTTRGIIDIWDIRFNVL-----I-----RSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYA 298 (437)
T ss_dssp EEEEETTSCEEEEETTTTEE-----E-----EEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEE
T ss_pred EEEEcCCCeEEEEEcCCccE-----E-----EEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEE
Confidence 99999999999999998654 2 2333 7888999998764 38999999999999999 6777777
Q ss_pred eeccc-------------------------CCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC-cCCCcccCCccccccCC
Q 003423 343 IKEHI-------------------------GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNG 396 (821)
Q Consensus 343 ~~~h~-------------------------~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~ 396 (821)
+.+|. ...|++++|+ ++++|++|+.||.|++||+.. .....+.++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~------- 370 (437)
T 3gre_A 299 FINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPS------- 370 (437)
T ss_dssp EESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--------
T ss_pred EEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEeccc-------
Confidence 76542 1248889999 779999999999999999954 2233322221
Q ss_pred CcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCC
Q 003423 397 RTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNE 476 (821)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 476 (821)
.....+....+++...+++.. ++......... ...+...+.++++.+..
T Consensus 371 --------------------~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~-~~~h~~~I~~i~~~~~~ 419 (437)
T 3gre_A 371 --------------------RFSDVFIPTQVTANLTMLLRK----------MKRTSTHSVDD-SLYHHDIINSISTCEVD 419 (437)
T ss_dssp ---------------------CCCEEEEEEEETTEEEEEEE----------CC--------------CCCEEEEEEEESS
T ss_pred --------------------ccCceEEEEEeecceEEEEEe----------cccccccccCc-ccccccceeeEeeeccC
Confidence 011224455555554443332 00000000011 12246678888776641
Q ss_pred CCCCCCCCcEEEEecCCccEEEEE
Q 003423 477 PKYPCGIDDWVALGDGKGNMTIVR 500 (821)
Q Consensus 477 ~~~s~~~~~~l~~g~~~g~i~i~~ 500 (821)
+..++++|+.||.|++|+
T Consensus 420 ------~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 420 ------ETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ------SSEEEEEEETTSCEEEEC
T ss_pred ------CceEEEEEcCCceEEEeC
Confidence 357999999999999994
No 69
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=9.8e-30 Score=295.23 Aligned_cols=291 Identities=17% Similarity=0.227 Sum_probs=225.5
Q ss_pred ceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc-----eeEEEccCcceeEEEEeeccCCccCeEEE
Q 003423 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-----IILEVHSPERCLLYSMKLWGDNLEALRIA 197 (821)
Q Consensus 123 ~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~s~~~~~~s~~~~~l~ 197 (821)
.....+.+|.+.|++++|+| .++++|+||+.|++|++||+.+.. ....+.+|.. .+.++++ ++++.+|+
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~--~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~-~v~~v~~---s~~g~~l~ 446 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPI--DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH-FVEDVVL---SSDGQFAL 446 (694)
T ss_dssp EEEEEEECCSSCEEEEECCT--TCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSS-CEEEEEE---CTTSSEEE
T ss_pred chhhhcccCCceeEEEEecC--CCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCC-cEEEEEE---CCCCCEEE
Confidence 44567899999999999998 135799999999999999997642 3445666654 4667777 68899999
Q ss_pred EEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCC
Q 003423 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277 (821)
Q Consensus 198 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~D 277 (821)
+|+.||.|++||+. .......+.+|.+.|.+++|+|++++|+||+.|
T Consensus 447 sgs~Dg~v~vwd~~---------------------------------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D 493 (694)
T 3dm0_A 447 SGSWDGELRLWDLA---------------------------------AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRD 493 (694)
T ss_dssp EEETTSEEEEEETT---------------------------------TTEEEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred EEeCCCcEEEEECC---------------------------------CCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCC
Confidence 99999999999998 667778889999999999999999999999999
Q ss_pred CeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC----CEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeE
Q 003423 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD----SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIW 352 (821)
Q Consensus 278 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~----~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~ 352 (821)
++|++||...... .. +. ....+|...|.+++|++ ..+++++.|++|++||+ .++....+.+|.+ .|+
T Consensus 494 ~~i~iwd~~~~~~-----~~-~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~-~v~ 565 (694)
T 3dm0_A 494 RTIKLWNTLGECK-----YT-IS-EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG-YVS 565 (694)
T ss_dssp SCEEEECTTSCEE-----EE-EC-SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEE
T ss_pred CEEEEEECCCCcc-----ee-ec-cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCC-CEE
Confidence 9999999865432 11 00 12357899999999984 47999999999999999 6788888999998 699
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcCCc-CCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCC
Q 003423 353 RCLYDSLSSLLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED 431 (821)
Q Consensus 353 ~l~~~~~~~~l~tg~~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~ 431 (821)
+++|+|++++|++|+.||.|++||+... .+..+ .+...+.+++|+|++
T Consensus 566 ~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~-------------------------------~~~~~v~~~~~sp~~ 614 (694)
T 3dm0_A 566 TVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL-------------------------------EANSVIHALCFSPNR 614 (694)
T ss_dssp EEEECTTSSEEEEEETTSBCEEEETTTTEEEECC-------------------------------BCSSCEEEEEECSSS
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe-------------------------------cCCCcEEEEEEcCCC
Confidence 9999999999999999999999999542 11111 112458999999999
Q ss_pred eEEEEecCCcEEEEEecCCCcceeeEeeeccCC------------------cceEEEeccCCCCCCCCCCCcEEEEecCC
Q 003423 432 TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEG------------------MPIICMDLLSNEPKYPCGIDDWVALGDGK 493 (821)
Q Consensus 432 ~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~------------------~~i~~~~~~~~~~~~s~~~~~~l~~g~~~ 493 (821)
.+++++.++.+. +|+..+............ ..+.++.+. +++.+|++|+.|
T Consensus 615 ~~l~~~~~~~i~---iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s--------pdg~~l~sgs~D 683 (694)
T 3dm0_A 615 YWLCAATEHGIK---IWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS--------ADGSTLFSGYTD 683 (694)
T ss_dssp SEEEEEETTEEE---EEETTTTEEEEEECCCCC----------------CCCCEEEEEEC--------TTSSEEEEEETT
T ss_pred cEEEEEcCCCEE---EEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEc--------CCCCEEEEEcCC
Confidence 999888877765 555444332111111100 013344443 466999999999
Q ss_pred ccEEEEEec
Q 003423 494 GNMTIVRVV 502 (821)
Q Consensus 494 g~i~i~~~~ 502 (821)
|.|++|++.
T Consensus 684 g~i~iW~i~ 692 (694)
T 3dm0_A 684 GVIRVWGIG 692 (694)
T ss_dssp SEEEEEEC-
T ss_pred CeEEEEecc
Confidence 999999974
No 70
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=6.9e-30 Score=271.17 Aligned_cols=296 Identities=12% Similarity=0.073 Sum_probs=211.9
Q ss_pred eeeEEEEEeccCCCCCCcceEEeecC--------CeEEEEECCCCeee--------eEEEe-eccccEEeEEeccccCCC
Q 003423 18 GEISALCFVHLPSHLSSLPFLLAGSG--------SQVLLYDLEAGTLI--------RPFQV-FHGIRLHGISCNFINCTE 80 (821)
Q Consensus 18 ~~Vt~l~~~~~p~~~~~~~~l~~g~~--------~~i~iwd~~t~~~~--------~~~~~-~~~~~i~~i~~~~~~~~~ 80 (821)
.||++++|+ || +++|++|.+ +.|++|++..+... ..+.. .+...|.++.+.+..+..
T Consensus 15 ~PV~sv~fs--~d----g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~ 88 (365)
T 4h5i_A 15 YPAYGAKFL--NN----DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILV 88 (365)
T ss_dssp SCEEEEEEE--ET----TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEE
T ss_pred CCEEEEEEe--CC----CcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEE
Confidence 589999999 99 788888753 25999999765321 11110 122246666665331100
Q ss_pred CC-CccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCcccccccee-----eeccCCCCcEEEEEEeecCCCCCEEEEEE
Q 003423 81 GS-VSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLV-----QSLPRLSHWVFDVCFLKVCNGNRSLAIGC 154 (821)
Q Consensus 81 ~~-~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~h~~~I~~~~~~~~~~~~~~l~t~~ 154 (821)
+. ++. ..+.....++.+|+|++..... . .+.. .....+.+.+.+++|+| ||++||+|+
T Consensus 89 g~~~~~--~~l~s~~~d~~~r~~~~~~~~~---------~--~~~~~~~~~~~~~~~~~~~~~v~fSp---Dg~~la~as 152 (365)
T 4h5i_A 89 GCNENS--TKITQGKGNKHLRKFKYDKVND---------Q--LEFLTSVDFDASTNADDYTKLVYISR---EGTVAAIAS 152 (365)
T ss_dssp ECCCCH--HHHHHTSCCCCEEEEEEETTTT---------E--EEEEEEECSSCCCCTTCCEEEEEECT---TSSCEEEEE
T ss_pred EECCCc--cEEEEecCCCcEEEEEecCCCc---------e--EEEeeeeceeecCCcccCEEEEEEcC---CCCEEEEEE
Confidence 00 000 0011112368899999875431 0 1111 12234556799999999 999987665
Q ss_pred --CCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCC
Q 003423 155 --SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (821)
Q Consensus 155 --~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 232 (821)
.|++|+|||+.+++.+..+..+. .+++++| +|++.++++++.++ +++|+...+
T Consensus 153 ~~~d~~i~iwd~~~~~~~~~~~~~~--~V~~v~f---spdg~~l~s~s~~~-~~~~~~~~~------------------- 207 (365)
T 4h5i_A 153 SKVPAIMRIIDPSDLTEKFEIETRG--EVKDLHF---STDGKVVAYITGSS-LEVISTVTG------------------- 207 (365)
T ss_dssp SCSSCEEEEEETTTTEEEEEEECSS--CCCEEEE---CTTSSEEEEECSSC-EEEEETTTC-------------------
T ss_pred CCCCCEEEEeECCCCcEEEEeCCCC--ceEEEEE---ccCCceEEecccee-EEEEEeccC-------------------
Confidence 68999999999999988876332 3677777 68999999998655 555555410
Q ss_pred CcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCC----eEEEEecccCcccCCCCceeeeceEEeccc
Q 003423 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR----SARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308 (821)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~ 308 (821)
.........+|...|.+++|+|+++++++++.|+ .+++|++..... .......+.+|.
T Consensus 208 ------------~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~ 269 (365)
T 4h5i_A 208 ------------SCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT------SVLRSKQVTNRF 269 (365)
T ss_dssp ------------CEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE------EEEEEEEEESSC
T ss_pred ------------cceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee------cceeeeeecCCC
Confidence 1222234457999999999999999999999887 688999877543 112124678899
Q ss_pred eeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEe-ecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 309 ARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMI-KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 309 ~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~-~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
..|++++|+ +.+|++|+.|++|++||+ +++++.++ .+|.. .|++++|+|++++|++|+.|++|+||++..
T Consensus 270 ~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~-~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 270 KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSF-AITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSS-CEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccC-CEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 999999999 589999999999999999 78888875 68988 699999999999999999999999999943
No 71
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.1e-30 Score=282.49 Aligned_cols=296 Identities=13% Similarity=0.142 Sum_probs=222.6
Q ss_pred eeeeeEEEEEeccC-CCCCCcceEEeec-CCeEEEEECCC---Ceeee-EEEeeccccEEeEEeccccCCCCCCccceee
Q 003423 16 YLGEISALCFVHLP-SHLSSLPFLLAGS-GSQVLLYDLEA---GTLIR-PFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p-~~~~~~~~l~~g~-~~~i~iwd~~t---~~~~~-~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~ 89 (821)
|.++|++++|+ | + +.+|++|. |+.|+|||+.+ +.... .+...+...|.+++|++++ ..
T Consensus 62 h~~~V~~~~~s--~~~----~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----------~~ 125 (437)
T 3gre_A 62 EPNSITSSAVS--PGE----TPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNF----------DA 125 (437)
T ss_dssp TTSCEEEEEEE--CSS----SCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTS----------SE
T ss_pred CCCceEEEEEC--CCC----CCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCC----------CE
Confidence 67899999999 9 7 66777765 89999999987 54221 2222345589999999653 25
Q ss_pred EEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeecc--C--CCCcEEEEEE--eecCCCCCEEEEEECCCcEEEEE
Q 003423 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP--R--LSHWVFDVCF--LKVCNGNRSLAIGCSDNSIRVWD 163 (821)
Q Consensus 90 ~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--h~~~I~~~~~--~~~~~~~~~l~t~~~d~~i~iwd 163 (821)
++++..|+.|++|++........ ........+..+. . +...+.++.+ +| ++.+|++|+.|+.|++||
T Consensus 126 l~s~s~dg~i~vwd~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~d~~i~iwd 198 (437)
T 3gre_A 126 FAVSSKDGQIIVLKVNHYQQESE----VKFLNCECIRKINLKNFGKNEYAVRMRAFVNE---EKSLLVALTNLSRVIIFD 198 (437)
T ss_dssp EEEEETTSEEEEEEEEEEEETTE----EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS---SCEEEEEEETTSEEEEEE
T ss_pred EEEEeCCCEEEEEEeccccCCce----eeccccceeEEEEccCcccccCceEEEEEEcC---CCCEEEEEeCCCeEEEEe
Confidence 66667799999999963210000 0000111222221 2 5667888874 45 889999999999999999
Q ss_pred ccCCceeEEEccC-cceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccc
Q 003423 164 ISNSSIILEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (821)
Q Consensus 164 ~~~~~~~~~~~~~-~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (821)
+.+++.+..+..+ +...+.+++| ++++.+|++|+.||.|++||++
T Consensus 199 ~~~~~~~~~~~~~~h~~~v~~~~~---s~~~~~l~s~~~dg~i~iwd~~------------------------------- 244 (437)
T 3gre_A 199 IRTLERLQIIENSPRHGAVSSICI---DEECCVLILGTTRGIIDIWDIR------------------------------- 244 (437)
T ss_dssp TTTCCEEEEEECCGGGCCEEEEEE---CTTSCEEEEEETTSCEEEEETT-------------------------------
T ss_pred CCCCeeeEEEccCCCCCceEEEEE---CCCCCEEEEEcCCCeEEEEEcC-------------------------------
Confidence 9999999988874 4556788887 6789999999999999999998
Q ss_pred ccceeeEEEEe-cCCCcEEEEEEcC----CCCEEEEEeCCCeEEEEecccCcccCCCCceeeec----------------
Q 003423 243 QHTAVNLFRLV-GHEGSIFRIEWSS----CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS---------------- 301 (821)
Q Consensus 243 ~~~~~~~~~~~-~h~~~I~~l~~s~----~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~---------------- 301 (821)
....+..+. +|...|.+++|+| ++++|++++.|++|++||+.+++. ...+..
T Consensus 245 --~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 317 (437)
T 3gre_A 245 --FNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHC-----QYAFINSDEQPSMEHFLPIEKG 317 (437)
T ss_dssp --TTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEE-----EEEEESSSSCCCGGGGSCBCSS
T ss_pred --CccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcE-----EEEEEcCCCCCccceecccccc
Confidence 566777775 7888999996665 677999999999999999987654 211100
Q ss_pred ---eEEec--cceeEEEEEEc-CCEEEEEeCCCeEEEEcC-CCceeeEeec-----------------------------
Q 003423 302 ---SVLYG--HNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKE----------------------------- 345 (821)
Q Consensus 302 ---~~~~~--h~~~i~~v~~~-~~~l~s~~~dg~i~iwd~-~~~~~~~~~~----------------------------- 345 (821)
..+.+ |...|++++|+ +.+|++++.|+.|++||+ +++....+.+
T Consensus 318 l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (437)
T 3gre_A 318 LEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTST 397 (437)
T ss_dssp GGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC----
T ss_pred cccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccc
Confidence 01233 77889999998 468999999999999999 6666666655
Q ss_pred --------ccCCCeEEEEEecC--CCEEEEEeCCCcEEEEE
Q 003423 346 --------HIGRGIWRCLYDSL--SSLLVTAGFDSAIKVHQ 376 (821)
Q Consensus 346 --------h~~~~i~~l~~~~~--~~~l~tg~~dg~I~iwd 376 (821)
|.. .|.+++++++ +.+|++|+.||.|++|+
T Consensus 398 ~~~~~~~~h~~-~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 398 HSVDDSLYHHD-IINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ---------CC-CEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccCccccccc-ceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 666 6999999988 78999999999999995
No 72
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.6e-30 Score=278.83 Aligned_cols=303 Identities=13% Similarity=0.079 Sum_probs=219.5
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEee-cCCeEEEEECCCC--eeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAG-SGSQVLLYDLEAG--TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g-~~~~i~iwd~~t~--~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~ 92 (821)
+.++|++++|+ |+ +++|++| .|+.|+|||+.++ +.+..+..+.. .|.+++|+|++ ..+++
T Consensus 10 ~~~~v~~~~~s--~~----g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~s~~~----------~~l~s 72 (377)
T 3dwl_C 10 LPKPSYEHAFN--SQ----RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDK-IVTCVDWAPKS----------NRIVT 72 (377)
T ss_dssp CSSCCSCCEEC--SS----SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSS-CEEEEEECTTT----------CCEEE
T ss_pred CCCcEEEEEEC--CC----CCEEEEecCCCEEEEEEccCCceEEEEEEecCCc-eEEEEEEeCCC----------CEEEE
Confidence 35689999999 98 6788887 5899999999998 77777776555 79999999763 25666
Q ss_pred EEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc---e
Q 003423 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS---I 169 (821)
Q Consensus 93 ~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~---~ 169 (821)
+..|+.|++|++..+. .......+.+|...|++++|+| ++++|++|+.|+.|++||+.+++ .
T Consensus 73 ~s~d~~v~vwd~~~~~------------~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~ 137 (377)
T 3dwl_C 73 CSQDRNAYVYEKRPDG------------TWKQTLVLLRLNRAATFVRWSP---NEDKFAVGSGARVISVCYFEQENDWWV 137 (377)
T ss_dssp EETTSSEEEC------------------CCCCEEECCCCSSCEEEEECCT---TSSCCEEEESSSCEEECCC-----CCC
T ss_pred EeCCCeEEEEEcCCCC------------ceeeeeEecccCCceEEEEECC---CCCEEEEEecCCeEEEEEECCccccee
Confidence 6779999999998642 1245677888999999999999 99999999999999999999887 3
Q ss_pred eEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeE
Q 003423 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (821)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (821)
...+..++...+.++++ ++++.+|++|+.||.|++||+............. .+. .......+
T Consensus 138 ~~~~~~~h~~~v~~~~~---~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~-----------~~~~~~~~ 199 (377)
T 3dwl_C 138 SKHLKRPLRSTILSLDW---HPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASV----WGS-----------RLPFNTVC 199 (377)
T ss_dssp CEEECSSCCSCEEEEEE---CTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCS----SCS-----------CCCEEEEE
T ss_pred eeEeecccCCCeEEEEE---cCCCCEEEEEeCCCEEEEEEEEecccCCCccccc----ccc-----------ccchhhhh
Confidence 67777745566788887 5788999999999999999997322111110000 000 00134566
Q ss_pred EEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCC
Q 003423 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED 327 (821)
Q Consensus 250 ~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~d 327 (821)
..+ +|.+.|.+++|+|++++|++++.|++|++||+.+++. .... ...+.+|...|.+++|+ +.+|++++.|
T Consensus 200 ~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~-----~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 272 (377)
T 3dwl_C 200 AEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ-----PPRA-LITVKLSQLPLRSLLWANESAIVAAGYNY 272 (377)
T ss_dssp ECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS-----CEEE-CCCEECSSSCEEEEEEEETTEEEEEESSS
T ss_pred hcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC-----ccee-eEeecCCCCceEEEEEcCCCCEEEEEcCC
Confidence 666 8999999999999999999999999999999998753 1110 14788999999999998 4667777655
Q ss_pred CeEEEEcCC-Cc--ee----------------------------------eEe----------------ecccCCCeEEE
Q 003423 328 CTCRVWGSD-GK--QL----------------------------------KMI----------------KEHIGRGIWRC 354 (821)
Q Consensus 328 g~i~iwd~~-~~--~~----------------------------------~~~----------------~~h~~~~i~~l 354 (821)
+.+ +|+.. +. .. ..+ ..|.+ .|+++
T Consensus 273 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~-~i~~~ 350 (377)
T 3dwl_C 273 SPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQN-MIATL 350 (377)
T ss_dssp SEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSS-CEEEE
T ss_pred cEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccc-eeEEE
Confidence 555 67652 11 00 111 12777 69999
Q ss_pred EEecCC-C---EEEEEeCCCcEEEEEc
Q 003423 355 LYDSLS-S---LLVTAGFDSAIKVHQF 377 (821)
Q Consensus 355 ~~~~~~-~---~l~tg~~dg~I~iwd~ 377 (821)
++.+.. . .|+|||.||.|++||+
T Consensus 351 ~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 351 RPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred eccCCCCCceEEEEeecCCCcEEEecC
Confidence 976543 3 6999999999999985
No 73
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=275.16 Aligned_cols=367 Identities=11% Similarity=0.083 Sum_probs=223.7
Q ss_pred CCcEEEEEccCCceeEEEccCcceeEEEEeeccCCc-cCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCc
Q 003423 156 DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (821)
Q Consensus 156 d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (821)
++.+++|++..++....+..|. ..+.+++| ++ ++.+|++|+.||.|++||+........
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~-~~v~~~~~---s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~---------------- 81 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHG-GGINTLDI---EPVEGRYMLSGGSDGVIVLYDLENSSRQSY---------------- 81 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCS-SCEEEEEE---CTTTCCEEEEEETTSCEEEEECCCCSSSSC----------------
T ss_pred cCcceeeccccCcceeeeeccC-CcEEEEEE---ecCCCCEEEEEcCCCeEEEEECCCCcccce----------------
Confidence 5567888888777776666654 45777877 57 899999999999999999983211110
Q ss_pred ceeeecccccceeeEEE-----EecCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccc
Q 003423 235 KCFKLQDQQHTAVNLFR-----LVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308 (821)
Q Consensus 235 ~~~~~~~~~~~~~~~~~-----~~~h~~~I~~l~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~ 308 (821)
........ ..+|.+.|.+++|+| ++++|++++.|+.|++||+.+++. .....+.
T Consensus 82 ---------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------~~~~~~~ 141 (408)
T 4a11_B 82 ---------YTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-----------ADVFNFE 141 (408)
T ss_dssp ---------EEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE-----------EEEEECS
T ss_pred ---------EeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc-----------ceeccCC
Confidence 00001111 135999999999999 778999999999999999998765 3444578
Q ss_pred eeEEEEEEcC-----CEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCC-EEEEEeCCCcEEEEEcCCc-
Q 003423 309 ARVWDCCLTD-----SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQAF- 380 (821)
Q Consensus 309 ~~i~~v~~~~-----~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~-~l~tg~~dg~I~iwd~~~~- 380 (821)
..+.++.+.+ .++++++.|+.|++||+ .++.+..+..|.+ .|.+++|+|+++ ++++|+.||.|++||++..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~ 220 (408)
T 4a11_B 142 ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQ-EILAVSWSPRYDYILATASADSRVKLWDVRRAS 220 (408)
T ss_dssp SCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCS-CEEEEEECSSCTTEEEEEETTSCEEEEETTCSS
T ss_pred CceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCC-cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCC
Confidence 8899999973 48999999999999999 6788889999988 699999999998 6999999999999999542
Q ss_pred -CCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEee
Q 003423 381 -LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKIL 459 (821)
Q Consensus 381 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~ 459 (821)
....+..+.. ............+...|.+++|+|++
T Consensus 221 ~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~v~~~~~~~~~---------------------------- 257 (408)
T 4a11_B 221 GCLITLDQHNG---------------KKSQAVESANTAHNGKVNGLCFTSDG---------------------------- 257 (408)
T ss_dssp CCSEECCTTTT---------------CSCCCTTTSSCSCSSCEEEEEECTTS----------------------------
T ss_pred ccccccccccc---------------ccceeeccccccccCceeEEEEcCCC----------------------------
Confidence 1111111100 00000011112233344444444433
Q ss_pred eccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEE
Q 003423 460 QVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIF 539 (821)
Q Consensus 460 ~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 539 (821)
.++++++.||.|++|++.+............ .. ........ .....+..++
T Consensus 258 -------------------------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~~-~~~~~~~~-~~~~~~~~~~ 308 (408)
T 4a11_B 258 -------------------------LHLLTVGTDNRMRLWNSSNGENTLVNYGKVC--NN-SKKGLKFT-VSCGCSSEFV 308 (408)
T ss_dssp -------------------------SEEEEEETTSCEEEEETTTCCBCCCCCCCCC--CC-CSSCCCCE-ECCSSSSCEE
T ss_pred -------------------------CEEEEecCCCeEEEEECCCCccceecccccc--cc-ccccceeE-EecCCCceEE
Confidence 5555666666677777655432111000000 00 00000001 1112234566
Q ss_pred EECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCccccccccc
Q 003423 540 TADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSV 619 (821)
Q Consensus 540 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~~~~~ 619 (821)
+++.++.|++||+... ++...+ .+|...|++++|+|++++|++|+.||.|++|++...
T Consensus 309 ~~~~~~~i~v~d~~~~--------------~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~------- 366 (408)
T 4a11_B 309 FVPYGSTIAVYTVYSG--------------EQITML-KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY------- 366 (408)
T ss_dssp EEEETTEEEEEETTTC--------------CEEEEE-CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--------
T ss_pred EEecCCEEEEEECcCC--------------cceeee-ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC-------
Confidence 6778999999999876 555665 789999999999999999999999999999998843
Q ss_pred ccccccCcccccccccCCcceEEEEEEecCCCceEEEEecCCCeEEEEEee
Q 003423 620 ALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYD 670 (821)
Q Consensus 620 ~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~t~g~Dg~i~iw~~~ 670 (821)
+++.... .+ ..... +.+ .....+.+.+.|+.+++|...
T Consensus 367 ------~~~~~~~-~~--~~~~~--~~~--~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 367 ------EPVPDDD-ET--TTKSQ--LNP--AFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ---------------------------------------------------
T ss_pred ------CccCCCC-ce--Eeccc--ccc--ccceeecccCccCceeecCCc
Confidence 1111111 00 01111 222 223557788889999999874
No 74
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-28 Score=256.24 Aligned_cols=276 Identities=15% Similarity=0.210 Sum_probs=227.1
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEee-cCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAG-SGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g-~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
|.++|++++|. . +.+|++| .|+.|++||+.+++....+..+.. .|.+++|+|++ ..++++.
T Consensus 17 h~~~v~~~~~~--~-----~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~-~v~~~~~~~~~----------~~l~~~~ 78 (313)
T 3odt_A 17 HDQDVRDVVAV--D-----DSKVASVSRDGTVRLWSKDDQWLGTVVYTGQG-FLNSVCYDSEK----------ELLLFGG 78 (313)
T ss_dssp CSSCEEEEEEE--E-----TTEEEEEETTSEEEEEEESSSEEEEEEEECSS-CEEEEEEETTT----------TEEEEEE
T ss_pred CCCCcEEEEec--C-----CCEEEEEEcCCcEEEEECCCCEEEEEeecCCc-cEEEEEECCCC----------CEEEEec
Confidence 78899999995 3 3455555 589999999999998888887655 79999999763 3566667
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEc
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 174 (821)
.++.+++|++.... ..+....+.+|...|.+++|. +++|++++.|+.|++|| .++....+.
T Consensus 79 ~dg~i~~~~~~~~~------------~~~~~~~~~~~~~~i~~~~~~-----~~~l~~~~~d~~i~~~d--~~~~~~~~~ 139 (313)
T 3odt_A 79 KDTMINGVPLFATS------------GEDPLYTLIGHQGNVCSLSFQ-----DGVVISGSWDKTAKVWK--EGSLVYNLQ 139 (313)
T ss_dssp TTSCEEEEETTCCT------------TSCC-CEECCCSSCEEEEEEE-----TTEEEEEETTSEEEEEE--TTEEEEEEE
T ss_pred CCCeEEEEEeeecC------------CCCcccchhhcccCEEEEEec-----CCEEEEEeCCCCEEEEc--CCcEEEecc
Confidence 79999999987542 134566788999999999984 45899999999999999 666666666
Q ss_pred cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEec
Q 003423 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (821)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (821)
.+.. .+.++.+.+ +++.++++++.||.|++||.. .....+..
T Consensus 140 ~~~~-~v~~~~~~~--~~~~~l~~~~~d~~i~i~d~~-----------------------------------~~~~~~~~ 181 (313)
T 3odt_A 140 AHNA-SVWDAKVVS--FSENKFLTASADKTIKLWQND-----------------------------------KVIKTFSG 181 (313)
T ss_dssp CCSS-CEEEEEEEE--TTTTEEEEEETTSCEEEEETT-----------------------------------EEEEEECS
T ss_pred cCCC-ceeEEEEcc--CCCCEEEEEECCCCEEEEecC-----------------------------------ceEEEEec
Confidence 6554 355555532 378899999999999999955 34455566
Q ss_pred -CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC-CEEEEEeCCCeEEE
Q 003423 255 -HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-SFIITAGEDCTCRV 332 (821)
Q Consensus 255 -h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~l~s~~~dg~i~i 332 (821)
|...|.+++|+|++. +++++.|+.|++||+++++. . ..+.+|...|++++|++ ..+++++.||.|++
T Consensus 182 ~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~-----~-----~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~i 250 (313)
T 3odt_A 182 IHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDV-----L-----RTYEGHESFVYCIKLLPNGDIVSCGEDRTVRI 250 (313)
T ss_dssp SCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCE-----E-----EEEECCSSCEEEEEECTTSCEEEEETTSEEEE
T ss_pred cCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhh-----h-----hhhhcCCceEEEEEEecCCCEEEEecCCEEEE
Confidence 999999999999988 99999999999999998755 3 57788999999999994 48999999999999
Q ss_pred EcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 333 wd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
||+ +++.+..+..|.. .|++++|+|+++ +++++.||.|++|+++.
T Consensus 251 wd~~~~~~~~~~~~~~~-~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 251 WSKENGSLKQVITLPAI-SIWSVDCMSNGD-IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp ECTTTCCEEEEEECSSS-CEEEEEECTTSC-EEEEETTSCEEEEESCG
T ss_pred EECCCCceeEEEeccCc-eEEEEEEccCCC-EEEEeCCCcEEEEeCCC
Confidence 999 7888999999987 699999999998 66799999999999965
No 75
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=7.2e-29 Score=269.62 Aligned_cols=278 Identities=14% Similarity=0.227 Sum_probs=222.1
Q ss_pred eEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEee-ccccEEeEEeccccCCCCCCccceeeEEEEEcCCe
Q 003423 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (821)
Q Consensus 20 Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~-~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~ 98 (821)
.+.|+|| ++ .+|++|.|++|+|||..+|+.+..++.+ +...|.+++|+|++ ..++++..|+.
T Consensus 108 ~~~l~wS--~~-----n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg----------~~lasgs~Dg~ 170 (420)
T 4gga_A 108 LNLVDWS--SG-----NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG----------NYLAVGTSSAE 170 (420)
T ss_dssp CBCEEEC--TT-----SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS----------SEEEEEETTSC
T ss_pred ceeEEEC--CC-----CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCC----------CEEEEEECCCe
Confidence 4678888 65 5899999999999999999998888753 34579999999764 25556667999
Q ss_pred EEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce-eEEEccCc
Q 003423 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-ILEVHSPE 177 (821)
Q Consensus 99 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~ 177 (821)
|+||++..+ +.+..+.+|...+.++++ ++..|++|+.|+.+++||...... +..+..+.
T Consensus 171 v~iWd~~~~---------------~~~~~~~~h~~~v~~~s~-----~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~ 230 (420)
T 4gga_A 171 VQLWDVQQQ---------------KRLRNMTSHSARVGSLSW-----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS 230 (420)
T ss_dssp EEEEETTTT---------------EEEEEECCCSSCEEEEEE-----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCS
T ss_pred EEEEEcCCC---------------cEEEEEeCCCCceEEEee-----CCCEEEEEeCCCceeEeeecccceeeEEecccc
Confidence 999998743 567889999999998876 457999999999999999986544 45565555
Q ss_pred ceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCC
Q 003423 178 RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG 257 (821)
Q Consensus 178 ~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 257 (821)
.. +..+.+ ++++.++++++.||.+++|+....+ .....+.....|.+
T Consensus 231 ~~-~~~~~~---~~~g~~l~s~~~D~~v~i~~~~~~~-----------------------------~~~~~~~~~~~~~~ 277 (420)
T 4gga_A 231 QE-VCGLRW---APDGRHLASGGNDNLVNVWPSAPGE-----------------------------GGWVPLQTFTQHQG 277 (420)
T ss_dssp SC-EEEEEE---CTTSSEEEEEETTSCEEEEESSCCS-----------------------------SCSCCSEEECCCSS
T ss_pred cc-eeeeee---cCCCCeeeeeeccccceEEeecccc-----------------------------ccceeeeeecccCC
Confidence 43 444444 5789999999999999999987211 12234556678999
Q ss_pred cEEEEEEcCCCC-EEEE--EeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEe--CCCeE
Q 003423 258 SIFRIEWSSCGS-KLVS--VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG--EDCTC 330 (821)
Q Consensus 258 ~I~~l~~s~~~~-~l~s--~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~--~dg~i 330 (821)
.|.+++|+|++. .+++ |+.|++|++||+.++.. . ....+...+.++.|. ++.+++++ .|+.|
T Consensus 278 ~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~-----~------~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I 346 (420)
T 4gga_A 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-----L------SAVDAHSQVCSILWSPHYKELISGHGFAQNQL 346 (420)
T ss_dssp CEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE-----E------EEEECSSCEEEEEEETTTTEEEEEECTTTCCE
T ss_pred ceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc-----c------eeeccccceeeeeecCCCCeEEEEEecCCCEE
Confidence 999999999764 5554 45899999999998765 2 333445668888887 46776654 79999
Q ss_pred EEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 331 RVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 331 ~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
++||+ +++++.++.+|.+ .|++++|+|+|++|+||+.|++|++||+..
T Consensus 347 ~iwd~~~~~~v~~l~gH~~-~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 347 VIWKYPTMAKVAELKGHTS-RVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp EEEETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 99999 7899999999998 699999999999999999999999999843
No 76
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=1.8e-28 Score=266.54 Aligned_cols=272 Identities=14% Similarity=0.176 Sum_probs=205.5
Q ss_pred CeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEE--EEecCCCcEEEEEEcCCCCE
Q 003423 193 ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF--RLVGHEGSIFRIEWSSCGSK 270 (821)
Q Consensus 193 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~I~~l~~s~~~~~ 270 (821)
+++||+| .|++|+|||.. +++... .+.+|...|++|+|+|+|++
T Consensus 116 ~n~lAvg-ld~tV~lWd~~---------------------------------tg~~~~~~~~~~~~~~V~sv~fspdg~~ 161 (420)
T 4gga_A 116 GNVLAVA-LDNSVYLWSAS---------------------------------SGDILQLLQMEQPGEYISSVAWIKEGNY 161 (420)
T ss_dssp TSEEEEE-ETTEEEEEETT---------------------------------TCCEEEEEECCSTTCCEEEEEECTTSSE
T ss_pred CCEEEEE-eCCEEEEEECC---------------------------------CCCEEEEEEecCCCCcEEEEEECCCCCE
Confidence 3577776 59999999998 444444 44578889999999999999
Q ss_pred EEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEcC--CCceeeEeecccC
Q 003423 271 LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS--DGKQLKMIKEHIG 348 (821)
Q Consensus 271 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~h~~ 348 (821)
|++|+.||+|++||+.+++. + ..+.+|...+.++.+++..+++++.|+.+++||. ....+..+.+|..
T Consensus 162 lasgs~Dg~v~iWd~~~~~~-----~-----~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~ 231 (420)
T 4gga_A 162 LAVGTSSAEVQLWDVQQQKR-----L-----RNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 231 (420)
T ss_dssp EEEEETTSCEEEEETTTTEE-----E-----EEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred EEEEECCCeEEEEEcCCCcE-----E-----EEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEeccccc
Confidence 99999999999999998765 3 5788999999999999999999999999999998 4566778899988
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEee
Q 003423 349 RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLT 428 (821)
Q Consensus 349 ~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~ 428 (821)
.+..+.++|+++++++++.|+.+++|+........ ........+...|.+++|+
T Consensus 232 -~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~-------------------------~~~~~~~~~~~~V~~~~~~ 285 (420)
T 4gga_A 232 -EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW-------------------------VPLQTFTQHQGAVKAVAWC 285 (420)
T ss_dssp -CEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCS-------------------------CCSEEECCCSSCEEEEEEC
T ss_pred -ceeeeeecCCCCeeeeeeccccceEEeeccccccc-------------------------eeeeeecccCCceeeeeeC
Confidence 69999999999999999999999999985421000 0011122334456666666
Q ss_pred cCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEE--EecCCccEEEEEecCCCC
Q 003423 429 SEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVA--LGDGKGNMTIVRVVGDVH 506 (821)
Q Consensus 429 ~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~--~g~~~g~i~i~~~~~~~~ 506 (821)
|.+. .+++ .|+.|+.|++|++.++..
T Consensus 286 p~~~----------------------------------------------------~~la~~~gs~D~~I~iwd~~t~~~ 313 (420)
T 4gga_A 286 PWQS----------------------------------------------------NVLATGGGTSDRHIRIWNVCSGAC 313 (420)
T ss_dssp TTCT----------------------------------------------------TEEEEEECTTTCEEEEEETTTTEE
T ss_pred CCcc----------------------------------------------------cEEEEEeecCCCEEEEEeCCcccc
Confidence 5431 2222 345678888888776543
Q ss_pred CCcceeEEeeccCccceeeeeEEeecCCCeEEEEE--CCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEE
Q 003423 507 TPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTA--DPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIM 584 (821)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 584 (821)
. ..+. . ...+.. .+++++++.++++ +.||.|++||+.+. +++..+ .+|...|+
T Consensus 314 ~----~~~~--~--~~~v~~--~~~~~~~~~lv~~sg~~d~~I~iwd~~~~--------------~~v~~l-~gH~~~V~ 368 (420)
T 4gga_A 314 L----SAVD--A--HSQVCS--ILWSPHYKELISGHGFAQNQLVIWKYPTM--------------AKVAEL-KGHTSRVL 368 (420)
T ss_dssp E----EEEE--C--SSCEEE--EEEETTTTEEEEEECTTTCCEEEEETTTC--------------CEEEEE-CCCSSCEE
T ss_pred c----eeec--c--ccceee--eeecCCCCeEEEEEecCCCEEEEEECCCC--------------cEEEEE-cCCCCCEE
Confidence 1 1111 1 111222 2344555665543 47999999999876 566776 78999999
Q ss_pred EEEeecCCCEEEEEcCCCcEEEEecCc
Q 003423 585 CLDASFEDEVLFCGDLRGNLVLFPLLR 611 (821)
Q Consensus 585 ~l~~s~~~~~L~sgs~dG~i~iw~~~~ 611 (821)
+++|+|++++||+|+.||+|+|||+..
T Consensus 369 ~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 369 SLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp EEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 999999999999999999999999874
No 77
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=2.2e-28 Score=252.00 Aligned_cols=253 Identities=11% Similarity=0.137 Sum_probs=197.5
Q ss_pred eeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCC--ceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCC
Q 003423 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS--SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (821)
Q Consensus 126 ~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg 203 (821)
..+.+|.+.|++++|+| ++++||+|+.|++|+|||+.++ +.+..+.+|.. .+++++|.+. .++.+|++|+.||
T Consensus 3 ~~~~~h~~~V~~~~~s~---~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~-~V~~v~~s~~-~~g~~l~s~s~D~ 77 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDY---YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWAHP-KFGTILASCSYDG 77 (297)
T ss_dssp EECCSCSSCEEEEEECT---TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSS-CEEEEEECCG-GGCSEEEEEETTT
T ss_pred eeccCCcCceEEEEECC---CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccC-CeEEEEecCC-CcCCEEEEEcCCC
Confidence 45679999999999999 9999999999999999999753 56777777765 4677777321 2478999999999
Q ss_pred EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCC--CCEEEEEeCCCeEE
Q 003423 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC--GSKLVSVSDDRSAR 281 (821)
Q Consensus 204 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~--~~~l~s~s~Dg~i~ 281 (821)
+|++||+..+ ....+..+.+|...|.+++|+|+ +.+|++++.|++|+
T Consensus 78 ~v~iWd~~~~-------------------------------~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~ 126 (297)
T 2pm7_B 78 KVMIWKEENG-------------------------------RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS 126 (297)
T ss_dssp EEEEEEBSSS-------------------------------CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred EEEEEEcCCC-------------------------------ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEE
Confidence 9999999711 12345567889999999999997 88999999999999
Q ss_pred EEecccCcccCCCCceeeeceEEeccceeEEEEEEcC---------------CEEEEEeCCCeEEEEcC-CCc----eee
Q 003423 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---------------SFIITAGEDCTCRVWGS-DGK----QLK 341 (821)
Q Consensus 282 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~---------------~~l~s~~~dg~i~iwd~-~~~----~~~ 341 (821)
+||+++... ... ..+.+|...|.+++|++ .+|++++.|++|++||+ .++ ...
T Consensus 127 ~wd~~~~~~-----~~~---~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~ 198 (297)
T 2pm7_B 127 VVEFKENGT-----TSP---IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES 198 (297)
T ss_dssp EEEBCSSSC-----BCC---EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEE
T ss_pred EEEecCCCc-----eee---eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEE
Confidence 999987532 111 46789999999999985 38999999999999998 444 566
Q ss_pred EeecccCCCeEEEEEecCC---CEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCC
Q 003423 342 MIKEHIGRGIWRCLYDSLS---SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSK 418 (821)
Q Consensus 342 ~~~~h~~~~i~~l~~~~~~---~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (821)
.+.+|.. .|.+++|+|++ ++|++++.|++|++||++...... . ........+
T Consensus 199 ~l~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~---------------~---------~~~~~~~~~ 253 (297)
T 2pm7_B 199 TLEGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPW---------------K---------KTLLKEEKF 253 (297)
T ss_dssp EECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCC---------------E---------EEESSSSCC
T ss_pred EecCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCcc---------------c---------eeeeecccC
Confidence 7889988 69999999984 899999999999999985421000 0 000001234
Q ss_pred CcceEEEEeecCCeEEEE-ecCCcEEEEEe
Q 003423 419 SEYVRCLHLTSEDTLYIA-TNHGYLYHTKL 447 (821)
Q Consensus 419 ~~~i~~l~f~~~~~~l~~-~~~g~~~~~~i 447 (821)
...|.+++|+|++.++++ +.+|.+..++.
T Consensus 254 ~~~v~~~~~s~~g~~las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 254 PDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (297)
T ss_dssp SSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence 567999999999977665 45677765544
No 78
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=6.9e-29 Score=255.84 Aligned_cols=252 Identities=17% Similarity=0.256 Sum_probs=195.5
Q ss_pred EEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEE
Q 003423 60 FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC 139 (821)
Q Consensus 60 ~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~ 139 (821)
+..|. ..|.+++|++++ ..+++++.|+.|+||++..+. .+.+..+.+|.++|++++
T Consensus 5 ~~~h~-~~V~~~~~s~~g----------~~las~s~D~~v~iw~~~~~~-------------~~~~~~l~gH~~~V~~v~ 60 (297)
T 2pm7_B 5 ANAHN-EMIHDAVMDYYG----------KRMATCSSDKTIKIFEVEGET-------------HKLIDTLTGHEGPVWRVD 60 (297)
T ss_dssp CCSCS-SCEEEEEECTTS----------SEEEEEETTSCEEEEEBCSSC-------------BCCCEEECCCSSCEEEEE
T ss_pred ccCCc-CceEEEEECCCC----------CEEEEEeCCCEEEEEecCCCC-------------cEEEEEEccccCCeEEEE
Confidence 33444 479999999664 245556679999999987432 345678899999999999
Q ss_pred EeecCCCCCEEEEEECCCcEEEEEccCCc--eeEEEccCcceeEEEEeeccCCcc--CeEEEEEeeCCEEEEEEcccCCc
Q 003423 140 FLKVCNGNRSLAIGCSDNSIRVWDISNSS--IILEVHSPERCLLYSMKLWGDNLE--ALRIASGTIYNEIIVWKVDWEHV 215 (821)
Q Consensus 140 ~~~~~~~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~s~~~~~~s~~--~~~l~sg~~dg~i~vwd~~~~~~ 215 (821)
|+|. .++++||+|+.|++|++||+.+++ .+..+..+.. .+.+++|. |+ +.+|++|+.||.|++||+...
T Consensus 61 ~s~~-~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~-~v~~v~~~---p~~~g~~l~s~s~d~~v~~wd~~~~-- 133 (297)
T 2pm7_B 61 WAHP-KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSA-SVNSVQWA---PHEYGPMLLVASSDGKVSVVEFKEN-- 133 (297)
T ss_dssp ECCG-GGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSS-CEEEEEEC---CGGGCSEEEEEETTSEEEEEEBCSS--
T ss_pred ecCC-CcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCC-ceeEEEeC---cCCCCcEEEEEECCCcEEEEEecCC--
Confidence 9861 137899999999999999998874 4455554443 46777773 44 789999999999999999711
Q ss_pred ccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCC-------------CCEEEEEeCCCeEEE
Q 003423 216 APLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC-------------GSKLVSVSDDRSARI 282 (821)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~-------------~~~l~s~s~Dg~i~i 282 (821)
.......+.+|...|.+++|+|+ +++|++|+.|++|++
T Consensus 134 -----------------------------~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~l 184 (297)
T 2pm7_B 134 -----------------------------GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184 (297)
T ss_dssp -----------------------------SCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEE
T ss_pred -----------------------------CceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEE
Confidence 01123456799999999999997 579999999999999
Q ss_pred EecccCcccCCCCceeeeceEEeccceeEEEEEEcC-----CEEEEEeCCCeEEEEcCCC-c--e-eeEe--ecccCCCe
Q 003423 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-----SFIITAGEDCTCRVWGSDG-K--Q-LKMI--KEHIGRGI 351 (821)
Q Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~-----~~l~s~~~dg~i~iwd~~~-~--~-~~~~--~~h~~~~i 351 (821)
||++++.. .... ...+.+|...|++++|++ .+|++++.|++|++||++. . . ...+ ..|.. .|
T Consensus 185 wd~~~~~~-----~~~~-~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~-~v 257 (297)
T 2pm7_B 185 WKYNSDAQ-----TYVL-ESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD-VL 257 (297)
T ss_dssp EEEETTTT-----EEEE-EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS-CE
T ss_pred EEEcCCCc-----eEEE-EEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCC-cE
Confidence 99987542 1111 147889999999999995 5899999999999999843 1 1 2223 45666 69
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 352 WRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 352 ~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
++++|+|++++|++++.||.|++|+..
T Consensus 258 ~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 258 WRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 999999999999999999999999974
No 79
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=8.6e-29 Score=263.94 Aligned_cols=299 Identities=15% Similarity=0.219 Sum_probs=228.1
Q ss_pred EEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceee--eccCCCCcEE
Q 003423 59 PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQ--SLPRLSHWVF 136 (821)
Q Consensus 59 ~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~I~ 136 (821)
.+...+..+|.+++|+|.. +++. ..++++.+++.|++|++.... ....+. ....|...|+
T Consensus 12 ~~~~~h~~~v~~i~~~p~~----~~~~--~~~~~~~~~~~v~vw~~~~~~------------~~~~~~~~~~~~~~~~v~ 73 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHS----KEGD--PLVFATVGSNRVTLYECHSQG------------EIRLLQSYVDADADENFY 73 (366)
T ss_dssp EEECTTCSCEEEEEECTTC----CTTS--CEEEEEEETTEEEEEEECGGG------------CEEEEEEEECSCTTCCEE
T ss_pred EeecCCCCceEEEEEeccc----CCCC--ceEEEECCCCEEEEEEcCCCc------------EEEeeeeccccCCCCcEE
Confidence 4443455689999999741 1111 357777788999999998543 012222 2223778899
Q ss_pred EEEEeecCCC----CCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCc-cCeEEEEEeeCCEEEEEEcc
Q 003423 137 DVCFLKVCNG----NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVD 211 (821)
Q Consensus 137 ~~~~~~~~~~----~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~-~~~~l~sg~~dg~i~vwd~~ 211 (821)
+++|+| + +.+|++|+.||.|++||+.+++.+..+..+.. .+.++.| ++ ++.+|++|+.||.|++||+.
T Consensus 74 ~~~~~~---~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~i~~~~~---~~~~~~~l~s~~~dg~i~iwd~~ 146 (366)
T 3k26_A 74 TCAWTY---DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGN-AINELKF---HPRDPNLLLSVSKDHALRLWNIQ 146 (366)
T ss_dssp EEEEEE---CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCS-CEEEEEE---CSSCTTEEEEEETTSCEEEEETT
T ss_pred EEEecc---CCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCC-cEEEEEE---CCCCCCEEEEEeCCCeEEEEEee
Confidence 999999 6 67999999999999999999999888876654 4667777 46 78899999999999999998
Q ss_pred cCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE---ecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccC
Q 003423 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL---VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (821)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~ 288 (821)
....+..+ .+|...|.+++|+|++++|++++.|+.|++||++++
T Consensus 147 ---------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 193 (366)
T 3k26_A 147 ---------------------------------TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK 193 (366)
T ss_dssp ---------------------------------TTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSH
T ss_pred ---------------------------------cCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCC
Confidence 55666666 689999999999999999999999999999999875
Q ss_pred cccCCCCceee-----------------------eceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEcC-CC-------
Q 003423 289 YWKDSDSIEEV-----------------------GSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DG------- 337 (821)
Q Consensus 289 ~~~~~~~~~~~-----------------------~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~-~~------- 337 (821)
+. ...+ ......+|...|.+++|+++++++++.|+.|++||+ .+
T Consensus 194 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 268 (366)
T 3k26_A 194 RM-----MNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKI 268 (366)
T ss_dssp HH-----HHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGC
T ss_pred cc-----ccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCcccccccc
Confidence 43 1000 002334599999999999999999999999999998 33
Q ss_pred -------ceeeEeecccCCCeEEEEEecC--CCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCc
Q 003423 338 -------KQLKMIKEHIGRGIWRCLYDSL--SSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNF 408 (821)
Q Consensus 338 -------~~~~~~~~h~~~~i~~l~~~~~--~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (821)
..+..+..|.. .|++++|+|+ +++|++|+.||.|++||+.......
T Consensus 269 ~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~------------------------ 323 (366)
T 3k26_A 269 KPSESNVTILGRFDYSQC-DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK------------------------ 323 (366)
T ss_dssp CTTCCCEEEEEEEECSSC-CSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG------------------------
T ss_pred ccCCcchheeccccccCC-cEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc------------------------
Confidence 23677888887 6999999999 9999999999999999996521100
Q ss_pred ccceeccCCC--CcceEEEEeecCCeEEEEe-cCCcEEEEE
Q 003423 409 SEQIRLTDSK--SEYVRCLHLTSEDTLYIAT-NHGYLYHTK 446 (821)
Q Consensus 409 ~~~~~~~~~~--~~~i~~l~f~~~~~~l~~~-~~g~~~~~~ 446 (821)
.....+..+ ...|.+++|+|++.+++++ .+|.+..|+
T Consensus 324 -~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 324 -AKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp -CEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred -ccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence 001112223 5779999999998766654 566776444
No 80
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=1.7e-28 Score=262.38 Aligned_cols=294 Identities=13% Similarity=0.104 Sum_probs=231.2
Q ss_pred cCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc--eeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEE
Q 003423 129 PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS--IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEII 206 (821)
Q Consensus 129 ~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~ 206 (821)
..|.+.|++++|+| ++++|++|+.|+.|++||+.+++ .+..+..+.. .+.++++ ++++.+|++++.||.|+
T Consensus 5 ~~~~~~i~~~~~s~---~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~-~v~~~~~---~~~~~~l~~~~~dg~i~ 77 (372)
T 1k8k_C 5 SFLVEPISCHAWNK---DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG-QVTGVDW---APDSNRIVTCGTDRNAY 77 (372)
T ss_dssp ESCSSCCCEEEECT---TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSS-CEEEEEE---ETTTTEEEEEETTSCEE
T ss_pred cccCCCeEEEEECC---CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCC-cccEEEE---eCCCCEEEEEcCCCeEE
Confidence 35889999999999 99999999999999999999987 6777776554 4667776 46889999999999999
Q ss_pred EEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 003423 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR 286 (821)
Q Consensus 207 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~ 286 (821)
+||+... .......+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 78 vwd~~~~-------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~ 126 (372)
T 1k8k_C 78 VWTLKGR-------------------------------TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 126 (372)
T ss_dssp EEEEETT-------------------------------EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEE
T ss_pred EEECCCC-------------------------------eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEec
Confidence 9999811 223344456899999999999999999999999999999998
Q ss_pred cCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-------------------CCceeeEeec
Q 003423 287 AEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-------------------DGKQLKMIKE 345 (821)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-------------------~~~~~~~~~~ 345 (821)
.... ..... ....+|...|.+++|+ +.+|++++.||.+++||+ .++.+..+..
T Consensus 127 ~~~~-----~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (372)
T 1k8k_C 127 QEND-----WWVCK-HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS 200 (372)
T ss_dssp TTTT-----EEEEE-EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC
T ss_pred CCCc-----ceeee-eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCC
Confidence 8653 22111 2446789999999998 479999999999999995 3677888888
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEE
Q 003423 346 HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCL 425 (821)
Q Consensus 346 h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 425 (821)
|.. .|.+++|+|++++|++++.||.|++||++... ....+..+...+.++
T Consensus 201 ~~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----------------------------~~~~~~~~~~~v~~~ 250 (372)
T 1k8k_C 201 SCG-WVHGVCFSANGSRVAWVSHDSTVCLADADKKM-----------------------------AVATLASETLPLLAV 250 (372)
T ss_dssp CSS-CEEEEEECSSSSEEEEEETTTEEEEEEGGGTT-----------------------------EEEEEECSSCCEEEE
T ss_pred CCC-eEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----------------------------eeEEEccCCCCeEEE
Confidence 888 69999999999999999999999999995421 011122345679999
Q ss_pred EeecCCeEEEEecCCcEEEEEecCCCcceeeE--------------------------------------eeeccCCcce
Q 003423 426 HLTSEDTLYIATNHGYLYHTKLCDMDSVNWNK--------------------------------------ILQVSEGMPI 467 (821)
Q Consensus 426 ~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~--------------------------------------~~~~~~~~~i 467 (821)
+|+|++.+++++.++.+..+++.... ..|.. .....+..++
T Consensus 251 ~~~~~~~~l~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 329 (372)
T 1k8k_C 251 TFITESSLVAAGHDCFPVLFTYDSAA-GKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSV 329 (372)
T ss_dssp EEEETTEEEEEETTSSCEEEEEETTT-TEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCE
T ss_pred EEecCCCEEEEEeCCeEEEEEccCcC-ceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCc
Confidence 99999999999999999877665510 11111 1112346678
Q ss_pred EEEeccCCCCCCCCCCC---cEEEEecCCccEEEEEecCC
Q 003423 468 ICMDLLSNEPKYPCGID---DWVALGDGKGNMTIVRVVGD 504 (821)
Q Consensus 468 ~~~~~~~~~~~~s~~~~---~~l~~g~~~g~i~i~~~~~~ 504 (821)
.++.+.+ +++ .++++|+.||.|++|++.+.
T Consensus 330 ~~~~~~~-------~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 330 SQISVLS-------GGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp EEEEEEE-------STTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred ceeEEec-------CCCcceeeEEEecCCCceEEEEecCh
Confidence 8877543 344 89999999999999998653
No 81
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=3.6e-30 Score=275.99 Aligned_cols=248 Identities=11% Similarity=0.055 Sum_probs=191.7
Q ss_pred cCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCC--ceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEE
Q 003423 129 PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS--SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEII 206 (821)
Q Consensus 129 ~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~ 206 (821)
..+.++|++++|+| ++++||+|+.|+.|++||+.++ +.+..+..|.. .+.+++| ++++.+|++|+.||.|+
T Consensus 8 ~~~~~~v~~~~~s~---~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~---s~~~~~l~s~s~d~~v~ 80 (377)
T 3dwl_C 8 HILPKPSYEHAFNS---QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDK-IVTCVDW---APKSNRIVTCSQDRNAY 80 (377)
T ss_dssp EECSSCCSCCEECS---SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSS-CEEEEEE---CTTTCCEEEEETTSSEE
T ss_pred ecCCCcEEEEEECC---CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCc-eEEEEEE---eCCCCEEEEEeCCCeEE
Confidence 34667899999999 9999999999999999999988 56666666544 4677777 57889999999999999
Q ss_pred EEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 003423 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR 286 (821)
Q Consensus 207 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~ 286 (821)
+||+.... .......+.+|...|.+++|+|++++|++++.|++|++||+.
T Consensus 81 vwd~~~~~------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 130 (377)
T 3dwl_C 81 VYEKRPDG------------------------------TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFE 130 (377)
T ss_dssp EC------------------------------------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-
T ss_pred EEEcCCCC------------------------------ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEEC
Confidence 99998110 123566778899999999999999999999999999999998
Q ss_pred cCcccCCCCceeeeceEEec-cceeEEEEEEc--CCEEEEEeCCCeEEEEcCC-------------------CceeeEee
Q 003423 287 AEYWKDSDSIEEVGSSVLYG-HNARVWDCCLT--DSFIITAGEDCTCRVWGSD-------------------GKQLKMIK 344 (821)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~-h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~-------------------~~~~~~~~ 344 (821)
.++. .... ..+.+ |...|++++|+ +.+|++++.|++|++||+. ++++..+
T Consensus 131 ~~~~-----~~~~--~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 202 (377)
T 3dwl_C 131 QEND-----WWVS--KHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY- 202 (377)
T ss_dssp ---------CCCC--EEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-
T ss_pred Cccc-----ceee--eEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-
Confidence 8652 1111 46666 99999999998 4799999999999999983 4455566
Q ss_pred cccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEE
Q 003423 345 EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRC 424 (821)
Q Consensus 345 ~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 424 (821)
.|.. .|.+++|+|++++|++++.||.|++||+...... ......+..|...|.+
T Consensus 203 ~~~~-~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~-------------------------~~~~~~~~~~~~~v~~ 256 (377)
T 3dwl_C 203 PSGG-WVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQP-------------------------PRALITVKLSQLPLRS 256 (377)
T ss_dssp CCSS-SEEEEEECTTSSCEEEEETTTEEC-CEECSTTSC-------------------------EEECCCEECSSSCEEE
T ss_pred cCCc-eEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCc-------------------------ceeeEeecCCCCceEE
Confidence 7777 6999999999999999999999999999642110 0001223345677999
Q ss_pred EEeecCCeEEEEecCCcEEEEEe
Q 003423 425 LHLTSEDTLYIATNHGYLYHTKL 447 (821)
Q Consensus 425 l~f~~~~~~l~~~~~g~~~~~~i 447 (821)
++|+|++.+++++.++.+..+..
T Consensus 257 ~~~s~~~~~l~~~~~~~~~~~~~ 279 (377)
T 3dwl_C 257 LLWANESAIVAAGYNYSPILLQG 279 (377)
T ss_dssp EEEEETTEEEEEESSSSEEEECC
T ss_pred EEEcCCCCEEEEEcCCcEEEEEe
Confidence 99999999999988888775543
No 82
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=2.6e-28 Score=254.68 Aligned_cols=277 Identities=14% Similarity=0.214 Sum_probs=222.3
Q ss_pred eEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEee-ccccEEeEEeccccCCCCCCccceeeEEEEEcCCe
Q 003423 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (821)
Q Consensus 20 Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~-~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~ 98 (821)
.++|+|| ++ .+|++|.|++|+|||+++|++++.++.+ +...|.+++|++++ ..+++++.|+.
T Consensus 28 ~~~l~WS--~~-----~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~----------~~l~sgs~Dg~ 90 (318)
T 4ggc_A 28 LNLVDWS--SG-----NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG----------NYLAVGTSSAE 90 (318)
T ss_dssp CBCEEEC--TT-----SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS----------SEEEEEETTSE
T ss_pred ceEEEEC--CC-----CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCC----------CEEEEEECCCc
Confidence 4789999 77 4899999999999999999999888753 34579999999764 25566667999
Q ss_pred EEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce-eEEEccCc
Q 003423 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-ILEVHSPE 177 (821)
Q Consensus 99 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~ 177 (821)
|++|++..+ +.+..+.+|...+.++.+ ++..|++|+.++.+++|+...... +..+..+.
T Consensus 91 v~iw~~~~~---------------~~~~~~~~h~~~~~~~~~-----~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (318)
T 4ggc_A 91 VQLWDVQQQ---------------KRLRNMTSHSARVGSLSW-----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS 150 (318)
T ss_dssp EEEEETTTT---------------EEEEEEECCSSCEEEEEE-----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCS
T ss_pred EEEeecCCc---------------eeEEEecCccceEEEeec-----CCCEEEEEecCCceEeeecCCCceeEEEEcCcc
Confidence 999998743 567888899998887654 557899999999999999987654 44555554
Q ss_pred ceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCC
Q 003423 178 RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG 257 (821)
Q Consensus 178 ~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 257 (821)
. .+..+.+ .+++.++++++.||.|++||+...+ ...........|.+
T Consensus 151 ~-~~~~~~~---~~~~~~l~s~~~d~~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~~ 197 (318)
T 4ggc_A 151 Q-EVCGLRW---APDGRHLASGGNDNLVNVWPSAPGE-----------------------------GGWVPLQTFTQHQG 197 (318)
T ss_dssp S-CEEEEEE---CTTSSEEEEEETTSCEEEEESSCBT-----------------------------TBSCCSEEECCCCS
T ss_pred C-ceEEEEE---cCCCCEEEEEecCcceeEEECCCCc-----------------------------ccccceeeecccCC
Confidence 4 3444444 4788999999999999999998221 12233455567899
Q ss_pred cEEEEEEcCCCCE---EEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEe--CCCeE
Q 003423 258 SIFRIEWSSCGSK---LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG--EDCTC 330 (821)
Q Consensus 258 ~I~~l~~s~~~~~---l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~--~dg~i 330 (821)
.|.+++++|++.. +++++.|++|++||...... .....+...+..+.|. +..+++++ .|+.|
T Consensus 198 ~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i 266 (318)
T 4ggc_A 198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-----------LSAVDAHSQVCSILWSPHYKELISGHGFAQNQL 266 (318)
T ss_dssp CEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE-----------EEEEECSSCEEEEEEETTTTEEEEEECTTTCCE
T ss_pred ceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc-----------cccccceeeeeeeeecccccceEEEEEcCCCEE
Confidence 9999999997753 35678899999999988765 4566677888898887 46666544 89999
Q ss_pred EEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 331 RVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 331 ~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
++||+ +++++.++.+|.+ .|++++|+|++++|++|+.||+|++||+.
T Consensus 267 ~iwd~~~~~~~~~l~gH~~-~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 267 VIWKYPTMAKVAELKGHTS-RVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp EEEETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred EEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 99999 7899999999998 69999999999999999999999999984
No 83
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5e-30 Score=273.73 Aligned_cols=326 Identities=9% Similarity=0.017 Sum_probs=228.2
Q ss_pred ccceeeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeE
Q 003423 12 DVGQYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (821)
Q Consensus 12 ~~~~~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~ 90 (821)
...+....|.+++|+ || ++++|+++ |++|+ |.++++.+ +.|.. .|..++|+|++
T Consensus 10 ~~~~~~~~v~sv~~S--pD----G~~iASas~D~TV~--d~~~~~~l---~gh~~-~v~~V~FsPdg------------- 64 (588)
T 2j04_A 10 DRKEFEDWKNNLTWA--RD----GTLYLTTFPDISIG--QPKYAKDI---NCNSK-NLFHVKEFPLE------------- 64 (588)
T ss_dssp CSCCCSSSSCCEEEC--TT----SCEEEECSSSEEEE--EECCCSCC---SSBGG-GTEEEEEECCC-------------
T ss_pred cHhHhhccEEEEEEC--CC----CCEEEEEcCCceee--ccccccee---cCCCc-cEEEEEECCCC-------------
Confidence 344566789999999 99 77888866 89999 86666544 45444 79999999763
Q ss_pred EEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCcee
Q 003423 91 VALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII 170 (821)
Q Consensus 91 l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~ 170 (821)
.++.+.+|+.+. .....+ .|.+.|++++|+| +|++||+++.||.|++||... .+
T Consensus 65 ----~~~~~~~~~~~~----------------~~~~~~-~~~~~V~~vawSP---dG~~LAs~s~dg~V~iwd~~~--~l 118 (588)
T 2j04_A 65 ----FENKLDFELAQQ----------------NGLLNS-QPVCYPRVCKPSP---IDDWMAVLSNNGNVSVFKDNK--ML 118 (588)
T ss_dssp ----CCCTTTTSCCCS----------------SCSSTT-SCSCCEEEEEECS---SSSCEEEEETTSCEEEEETTE--EE
T ss_pred ----CcceEEEEeCCC----------------ceEeec-CCCCcEEEEEECC---CCCEEEEEeCCCcEEEEeCCc--ee
Confidence 133344443221 112222 4578999999999 999999999999999999544 55
Q ss_pred EEEccCcce----eEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccce
Q 003423 171 LEVHSPERC----LLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (821)
Q Consensus 171 ~~~~~~~~~----~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (821)
..+. +... .+.+++| +||+.+||+|+.||+|++||+..+.... .+.
T Consensus 119 ~~l~-~~~~~~~~sv~svaf---SPDG~~LAsgs~DGtVkIWd~~~~~l~~--------------------------~~~ 168 (588)
T 2j04_A 119 TNLD-SKGNLSSRTYHCFEW---NPIESSIVVGNEDGELQFFSIRKNSENT--------------------------PEF 168 (588)
T ss_dssp EECC-CSSCSTTTCEEEEEE---CSSSSCEEEEETTSEEEEEECCCCTTTC--------------------------CCC
T ss_pred eecc-CCCccccccEEEEEE---cCCCCEEEEEcCCCEEEEEECCCCcccc--------------------------ccc
Confidence 5555 4432 4667777 7999999999999999999998210000 001
Q ss_pred eeEEEE----ecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEE-eccceeEEEEEEcCCEE
Q 003423 247 VNLFRL----VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL-YGHNARVWDCCLTDSFI 321 (821)
Q Consensus 247 ~~~~~~----~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~h~~~i~~v~~~~~~l 321 (821)
-.+.++ .+|.+.|.+++|+|+| |++++.|++|++||+..+.. .... ..+ .+|...|++++|++..+
T Consensus 169 i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~-----~~~~--~tL~~~h~~~V~svaFsg~~L 239 (588)
T 2j04_A 169 YFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH-----QPVS--RMIQNASRRKITDLKIVDYKV 239 (588)
T ss_dssp EEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS-----CCCE--EEEECCCSSCCCCEEEETTEE
T ss_pred eeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc-----ccce--eeecccccCcEEEEEEECCEE
Confidence 135665 6788999999999999 88899999999999988653 1111 235 47889999999998889
Q ss_pred EEEeCCCeEEEEcCCCceeeEee-cccCCCeEEEEE--ecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCc
Q 003423 322 ITAGEDCTCRVWGSDGKQLKMIK-EHIGRGIWRCLY--DSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRT 398 (821)
Q Consensus 322 ~s~~~dg~i~iwd~~~~~~~~~~-~h~~~~i~~l~~--~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 398 (821)
++++ +++|++||+.+.....+. +|.. .|..+++ +|++..+++++.||. ++|..+. ++ +.......... +.
T Consensus 240 ASa~-~~tIkLWd~~~~~~~~~~~gh~~-~V~~va~~~s~d~~~La~a~edG~-klw~~d~--~~-~spd~~l~a~~-d~ 312 (588)
T 2j04_A 240 VLTC-PGYVHKIDLKNYSISSLKTGSLE-NFHIIPLNHEKESTILLMSNKTSY-KVLLEDE--LH-VTADNIIAPYL-EK 312 (588)
T ss_dssp EEEC-SSEEEEEETTTTEEEEEECSCCS-CCCEEEETTCSSCEEEEECSSCEE-EEEESSS--EE-EECCCSSHHHH-HH
T ss_pred EEEe-CCeEEEEECCCCeEEEEEcCCCc-eEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc--EE-ECCCceEEEEc-CC
Confidence 9887 799999999766664444 8887 6999999 999999999999999 9999862 11 11000000000 00
Q ss_pred ceEEeecCCcc-cceeccCCCCcceEEEEeecCCeEEEEec
Q 003423 399 EIFSIKIPNFS-EQIRLTDSKSEYVRCLHLTSEDTLYIATN 438 (821)
Q Consensus 399 ~~~~~~~~~~~-~~~~~~~~~~~~i~~l~f~~~~~~l~~~~ 438 (821)
. +...+.. .....+.. ...|.+++|+|+|++++.+.
T Consensus 313 ~---v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 313 K---FKKWSTIWNEFNNYET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp H---HHHTTTTTTSSSSSCC-EEEEEEEEECTTSSEEEEEE
T ss_pred E---EEEEECCCCceeeecc-ceEEEEEEECCCCCEEEEEE
Confidence 0 0011111 11122222 45699999999998888764
No 84
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=4.5e-29 Score=270.47 Aligned_cols=319 Identities=15% Similarity=0.180 Sum_probs=232.8
Q ss_pred CCCCcceeeccce-------eeeeeEEEEEeccC-CCCCCcceEEeec-CCeEEEEECCCCeeeeEEEe-----------
Q 003423 3 KKDLSEWRLDVGQ-------YLGEISALCFVHLP-SHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQV----------- 62 (821)
Q Consensus 3 ~~~i~~w~~~~~~-------~~~~Vt~l~~~~~p-~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~----------- 62 (821)
++.+++|++..++ |.++|++++|+ | + +.+|++|. |+.|++||+.+++....+..
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s--~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 95 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIE--PVE----GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHP 95 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEEC--TTT----CCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCT
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEe--cCC----CCEEEEEcCCCeEEEEECCCCcccceEecccccccccccc
Confidence 3456788877654 88999999999 9 7 66777765 89999999999877666541
Q ss_pred -eccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEe
Q 003423 63 -FHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFL 141 (821)
Q Consensus 63 -~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~ 141 (821)
.+...|.++.|+|.. . ..++++..++.|++|++... +....+. +...+.+++++
T Consensus 96 ~~~~~~v~~~~~~~~~----~-----~~l~s~~~d~~i~iwd~~~~---------------~~~~~~~-~~~~~~~~~~~ 150 (408)
T 4a11_B 96 DVHRYSVETVQWYPHD----T-----GMFTSSSFDKTLKVWDTNTL---------------QTADVFN-FEETVYSHHMS 150 (408)
T ss_dssp TCCSSCEEEEEECTTC----T-----TCEEEEETTSEEEEEETTTT---------------EEEEEEE-CSSCEEEEEEC
T ss_pred ccCCCcEEEEEEccCC----C-----cEEEEEeCCCeEEEeeCCCC---------------ccceecc-CCCceeeeEee
Confidence 144579999999631 1 24555566999999998743 2333443 67889999999
Q ss_pred ecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCe-EEEEEeeCCEEEEEEcccCCcccCCC
Q 003423 142 KVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLN 220 (821)
Q Consensus 142 ~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~ 220 (821)
|..+++.++++|+.|+.|++||+.+++.+..+..+.. .+.++.+ ++++. ++++|+.||.|++||+.....
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~v~~~~~---~~~~~~ll~~~~~dg~i~i~d~~~~~~----- 221 (408)
T 4a11_B 151 PVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQ-EILAVSW---SPRYDYILATASADSRVKLWDVRRASG----- 221 (408)
T ss_dssp SSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCS-CEEEEEE---CSSCTTEEEEEETTSCEEEEETTCSSC-----
T ss_pred cCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCC-cEEEEEE---CCCCCcEEEEEcCCCcEEEEECCCCCc-----
Confidence 9555666999999999999999999988888876654 4566776 46666 699999999999999983210
Q ss_pred CCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeee
Q 003423 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300 (821)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 300 (821)
....+.... ............+|.+.|.+++|+|++++|++++.|+.|++||+.+++. .....
T Consensus 222 --~~~~~~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-----~~~~~ 284 (408)
T 4a11_B 222 --CLITLDQHN----------GKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN-----TLVNY 284 (408)
T ss_dssp --CSEECCTTT----------TCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB-----CCCCC
T ss_pred --ccccccccc----------cccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc-----ceecc
Confidence 000000000 0001112222357999999999999999999999999999999998764 21110
Q ss_pred ceEEecc-ceeEEEEEEc-CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 301 SSVLYGH-NARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 301 ~~~~~~h-~~~i~~v~~~-~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
....... .......... ...+++++.|+.+++||+ +++.+..+.+|.+ .|++++|+|++++|++++.||.|++|++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 363 (408)
T 4a11_B 285 GKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK-TVDCCVFQSNFQELYSGSRDCNILAWVP 363 (408)
T ss_dssp CCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred ccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCC-eEEEEEEcCCCCEEEEECCCCeEEEEeC
Confidence 0000001 1111112222 467888889999999999 7899999999988 6999999999999999999999999999
Q ss_pred CC
Q 003423 378 QA 379 (821)
Q Consensus 378 ~~ 379 (821)
+.
T Consensus 364 ~~ 365 (408)
T 4a11_B 364 SL 365 (408)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 85
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=5.4e-29 Score=272.07 Aligned_cols=269 Identities=19% Similarity=0.295 Sum_probs=224.2
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
|..+|+++++. +.++++|. |+.|++||+.+++.+..+..+.. .|.++.+.+ ..+++++
T Consensus 132 ~~~~v~~~~~d--------~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~~~------------~~l~sg~ 190 (435)
T 1p22_A 132 TSKGVYCLQYD--------DQKIVSGLRDNTIKIWDKNTLECKRILTGHTG-SVLCLQYDE------------RVIITGS 190 (435)
T ss_dssp SCCCEEEEECC--------SSEEEEEESSSCEEEEESSSCCEEEEECCCSS-CEEEEECCS------------SEEEEEE
T ss_pred CCCcEEEEEEC--------CCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCC-cEEEEEECC------------CEEEEEc
Confidence 45678888875 44666655 89999999999999999887665 799998842 2466667
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCcee---E
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII---L 171 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~---~ 171 (821)
.|+.|++||+..+ +.+..+.+|.+.|.+++|++ +.|++|+.||.|++||+.++... .
T Consensus 191 ~dg~i~vwd~~~~---------------~~~~~~~~h~~~v~~l~~~~-----~~l~s~s~dg~i~vwd~~~~~~~~~~~ 250 (435)
T 1p22_A 191 SDSTVRVWDVNTG---------------EMLNTLIHHCEAVLHLRFNN-----GMMVTCSKDRSIAVWDMASPTDITLRR 250 (435)
T ss_dssp TTSCEEEEESSSC---------------CEEEEECCCCSCEEEEECCT-----TEEEEEETTSCEEEEECSSSSCCEEEE
T ss_pred CCCeEEEEECCCC---------------cEEEEEcCCCCcEEEEEEcC-----CEEEEeeCCCcEEEEeCCCCCCceeee
Confidence 7999999998753 46778889999999999965 48999999999999999987754 3
Q ss_pred EEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEE
Q 003423 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (821)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (821)
.+..+. ..+.++.+ ++.++++|+.||.|++||+. ....+..
T Consensus 251 ~~~~~~-~~v~~~~~-----~~~~l~s~~~dg~i~vwd~~---------------------------------~~~~~~~ 291 (435)
T 1p22_A 251 VLVGHR-AAVNVVDF-----DDKYIVSASGDRTIKVWNTS---------------------------------TCEFVRT 291 (435)
T ss_dssp EECCCS-SCEEEEEE-----ETTEEEEEETTSEEEEEETT---------------------------------TCCEEEE
T ss_pred EecCCC-CcEEEEEe-----CCCEEEEEeCCCeEEEEECC---------------------------------cCcEEEE
Confidence 444443 34566665 67899999999999999998 6677888
Q ss_pred EecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEE
Q 003423 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCR 331 (821)
Q Consensus 252 ~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~ 331 (821)
+.+|...|.+++| ++++|++|+.||+|++||+.+++. . ..+.+|...|.+++|.+.++++++.||.|+
T Consensus 292 ~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~-----~-----~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~ 359 (435)
T 1p22_A 292 LNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGAC-----L-----RVLEGHEELVRCIRFDNKRIVSGAYDGKIK 359 (435)
T ss_dssp EECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCE-----E-----EEECCCSSCEEEEECCSSEEEEEETTSCEE
T ss_pred EcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCE-----E-----EEEeCCcCcEEEEEecCCEEEEEeCCCcEE
Confidence 8999999999999 468999999999999999998765 3 578889999999999999999999999999
Q ss_pred EEcC-CCc---------eeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 332 VWGS-DGK---------QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 332 iwd~-~~~---------~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
+||+ .++ ++..+.+|.+ .|.++++ ++++|++|+.||.|++||+..
T Consensus 360 vwd~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 360 VWDLVAALDPRAPAGTLCLRTLVEHSG-RVFRLQF--DEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp EEEHHHHTSTTSCTTTTEEEEECCCSS-CCCCEEE--CSSCEEECCSSSEEEEEC---
T ss_pred EEECCCCCCccccccchheeeccCCCC-CeEEEEe--CCCEEEEEeCCCEEEEEECCC
Confidence 9998 333 7888899988 6999999 678899999999999999954
No 86
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.8e-28 Score=263.32 Aligned_cols=274 Identities=13% Similarity=0.209 Sum_probs=223.8
Q ss_pred eEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeE
Q 003423 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRV 99 (821)
Q Consensus 20 Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v 99 (821)
+++++++ ++ .+++++.|+.|++||+.+++....+...+...|.+++|+|++ ..++++..++.|
T Consensus 96 ~~~~~~s--~~-----~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~----------~~l~~~~~dg~i 158 (401)
T 4aez_A 96 LNLLDWS--NL-----NVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDG----------SFLSVGLGNGLV 158 (401)
T ss_dssp CBCEEEC--TT-----SEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTS----------SEEEEEETTSCE
T ss_pred EEEEeec--CC-----CEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCC----------CEEEEECCCCeE
Confidence 4567776 43 577777899999999999999888887566689999999763 255666679999
Q ss_pred EEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccC-CceeEEEccCcc
Q 003423 100 KLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN-SSIILEVHSPER 178 (821)
Q Consensus 100 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~-~~~~~~~~~~~~ 178 (821)
++|++... +.+..+.+|...|.+++|++ ++|++|+.||.|++||+.. +..+..+..+..
T Consensus 159 ~iwd~~~~---------------~~~~~~~~~~~~v~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 218 (401)
T 4aez_A 159 DIYDVESQ---------------TKLRTMAGHQARVGCLSWNR-----HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS 218 (401)
T ss_dssp EEEETTTC---------------CEEEEECCCSSCEEEEEEET-----TEEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred EEEECcCC---------------eEEEEecCCCCceEEEEECC-----CEEEEEcCCCCEEEEecccCcceeeEEcCCCC
Confidence 99998743 46778889999999999954 6899999999999999984 555666665544
Q ss_pred eeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCc
Q 003423 179 CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGS 258 (821)
Q Consensus 179 ~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 258 (821)
.+.++.+ ++++.++++|+.||.|++||+. ....+..+.+|...
T Consensus 219 -~v~~~~~---~~~~~~l~s~~~d~~v~iwd~~---------------------------------~~~~~~~~~~~~~~ 261 (401)
T 4aez_A 219 -EVCGLAW---RSDGLQLASGGNDNVVQIWDAR---------------------------------SSIPKFTKTNHNAA 261 (401)
T ss_dssp -CEEEEEE---CTTSSEEEEEETTSCEEEEETT---------------------------------CSSEEEEECCCSSC
T ss_pred -CeeEEEE---cCCCCEEEEEeCCCeEEEccCC---------------------------------CCCccEEecCCcce
Confidence 4667777 5789999999999999999998 56677788899999
Q ss_pred EEEEEEcCCCC-EEEEEe--CCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEe--CCCeEE
Q 003423 259 IFRIEWSSCGS-KLVSVS--DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG--EDCTCR 331 (821)
Q Consensus 259 I~~l~~s~~~~-~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~--~dg~i~ 331 (821)
|.+++|+|++. ++++++ .|+.|++||+.+++. .....+...|.+++|+ +.++++++ .||.|+
T Consensus 262 v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~-----------~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~ 330 (401)
T 4aez_A 262 VKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR-----------VNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLS 330 (401)
T ss_dssp CCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE-----------EEEEECSSCEEEEEECSSSSEEEEEECTTTCEEE
T ss_pred EEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE-----------EEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEE
Confidence 99999999774 666665 799999999998765 2334577889999998 57888844 899999
Q ss_pred EEcC-CCcee--eEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 332 VWGS-DGKQL--KMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 332 iwd~-~~~~~--~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
+|++ .++.. ..+.+|.. .|.+++|+|++++|++++.||.|++|++..
T Consensus 331 v~~~~~~~~~~~~~~~~h~~-~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 331 IWSYSSSGLTKQVDIPAHDT-RVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp EEEEETTEEEEEEEEECCSS-CCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred EEecCCccceeEEEecCCCC-CEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 9999 44333 34678887 699999999999999999999999999954
No 87
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=1e-27 Score=250.20 Aligned_cols=275 Identities=14% Similarity=0.148 Sum_probs=201.2
Q ss_pred ccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE--ecCCCcEEEEEEcCCC
Q 003423 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL--VGHEGSIFRIEWSSCG 268 (821)
Q Consensus 191 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~I~~l~~s~~~ 268 (821)
+++ +||+| .|++|+|||+. +++.+..+ .+|...|.+++|+|++
T Consensus 35 ~~~-~lAvg-~D~tV~iWd~~---------------------------------tg~~~~~~~~~~~~~~V~~v~~~~~~ 79 (318)
T 4ggc_A 35 SGN-VLAVA-LDNSVYLWSAS---------------------------------SGDILQLLQMEQPGEYISSVAWIKEG 79 (318)
T ss_dssp TTS-EEEEE-ETTEEEEEETT---------------------------------TCCEEEEEECCSTTCCEEEEEECTTS
T ss_pred CCC-EEEEE-eCCEEEEEECC---------------------------------CCCEEEEEEecCCCCeEEEEEECCCC
Confidence 444 67766 59999999998 44545444 5788899999999999
Q ss_pred CEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEcC--CCceeeEeecc
Q 003423 269 SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS--DGKQLKMIKEH 346 (821)
Q Consensus 269 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~h 346 (821)
++|++|+.||+|++||+.+++. . ..+.+|...+.++.+.+..+++++.++.+++|+. ....+..+.+|
T Consensus 80 ~~l~sgs~Dg~v~iw~~~~~~~-----~-----~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (318)
T 4ggc_A 80 NYLAVGTSSAEVQLWDVQQQKR-----L-----RNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGH 149 (318)
T ss_dssp SEEEEEETTSEEEEEETTTTEE-----E-----EEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred CEEEEEECCCcEEEeecCCcee-----E-----EEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCc
Confidence 9999999999999999998765 3 5788999999999999999999999999999998 34667778888
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEE
Q 003423 347 IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLH 426 (821)
Q Consensus 347 ~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 426 (821)
.. .+..+.+.++++++++++.||.|++||+....... ........+...+.+++
T Consensus 150 ~~-~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-------------------------~~~~~~~~~~~~v~~~~ 203 (318)
T 4ggc_A 150 SQ-EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW-------------------------VPLQTFTQHQGAVKAVA 203 (318)
T ss_dssp SS-CEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBS-------------------------CCSEEECCCCSCEEEEE
T ss_pred cC-ceEEEEEcCCCCEEEEEecCcceeEEECCCCcccc-------------------------cceeeecccCCceEEEE
Confidence 88 69999999999999999999999999985421100 00001111223344444
Q ss_pred eecCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCC
Q 003423 427 LTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVH 506 (821)
Q Consensus 427 f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~ 506 (821)
+.+.+..+ -.++.++.++.|++|+......
T Consensus 204 ~~~~~~~~--------------------------------------------------~~~~~~~~~~~i~lwd~~~~~~ 233 (318)
T 4ggc_A 204 WCPWQSNV--------------------------------------------------LATGGGTSDRHIRIWNVCSGAC 233 (318)
T ss_dssp ECTTSTTE--------------------------------------------------EEEEECTTTCEEEEEETTTCCE
T ss_pred ecCCCCcE--------------------------------------------------EEEEecCCCCEEEEEecccccc
Confidence 44432110 1234556677888888655332
Q ss_pred CCcceeEEeeccCccceeeeeEEeecCCCeEEEE--ECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEE
Q 003423 507 TPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFT--ADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIM 584 (821)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 584 (821)
. .. ... ...+. ..++.+++..+++ ++.|+.|++||+.+. +++..+ .+|...|+
T Consensus 234 ~-----~~-~~~--~~~v~--~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~--------------~~~~~l-~gH~~~V~ 288 (318)
T 4ggc_A 234 L-----SA-VDA--HSQVC--SILWSPHYKELISGHGFAQNQLVIWKYPTM--------------AKVAEL-KGHTSRVL 288 (318)
T ss_dssp E-----EE-EEC--SSCEE--EEEEETTTTEEEEEECTTTCCEEEEETTTC--------------CEEEEE-CCCSSCEE
T ss_pred c-----cc-ccc--eeeee--eeeecccccceEEEEEcCCCEEEEEECCCC--------------cEEEEE-cCCCCCEE
Confidence 1 10 011 11111 1234454455443 458999999999877 566676 78999999
Q ss_pred EEEeecCCCEEEEEcCCCcEEEEecCc
Q 003423 585 CLDASFEDEVLFCGDLRGNLVLFPLLR 611 (821)
Q Consensus 585 ~l~~s~~~~~L~sgs~dG~i~iw~~~~ 611 (821)
+++|+|++++||+|+.||+|+|||+.+
T Consensus 289 ~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 289 SLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 999999999999999999999999863
No 88
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=9.3e-30 Score=277.93 Aligned_cols=287 Identities=14% Similarity=0.191 Sum_probs=206.9
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEe-eccccEEeEEeccccCCCCCCccceeeEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQV-FHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~-~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~ 93 (821)
|...|+||+|+ |. ...+||+|. ||.|+|||+.+++....+.. .+...|.+++|+|.. . ..++++
T Consensus 118 ~~~~V~~l~~~--P~---~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~----~-----~~l~s~ 183 (435)
T 4e54_B 118 FDRRATSLAWH--PT---HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLN----T-----NQFYAS 183 (435)
T ss_dssp CSSCEEEEEEC--SS---CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSC----T-----TEEEEE
T ss_pred CCCCEEEEEEe--CC---CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCC----C-----CEEEEE
Confidence 56679999999 96 356888876 89999999998865544432 134479999999641 1 245555
Q ss_pred EcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEE
Q 003423 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (821)
Q Consensus 94 ~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~ 173 (821)
+.|++|++||++.+. .........+..++.+++|+| ++++|++|+.||.|++||+.. +.+..+
T Consensus 184 s~D~~v~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~---~~~~l~~g~~dg~i~~wd~~~-~~~~~~ 246 (435)
T 4e54_B 184 SMEGTTRLQDFKGNI-------------LRVFASSDTINIWFCSLDVSA---SSRMVVTGDNVGNVILLNMDG-KELWNL 246 (435)
T ss_dssp CSSSCEEEEETTSCE-------------EEEEECCSSCSCCCCCEEEET---TTTEEEEECSSSBEEEEESSS-CBCCCS
T ss_pred eCCCEEEEeeccCCc-------------eeEEeccCCCCccEEEEEECC---CCCEEEEEeCCCcEeeeccCc-ceeEEE
Confidence 668999999986431 233334445566789999999 999999999999999999864 455556
Q ss_pred ccCcceeEEEEeeccCCccC-eEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE
Q 003423 174 HSPERCLLYSMKLWGDNLEA-LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (821)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (821)
..|.. .+.+++|. |++ .++++|+.|+.|++||+.... ....+...
T Consensus 247 ~~h~~-~v~~v~~~---p~~~~~~~s~s~d~~v~iwd~~~~~------------------------------~~~~~~~~ 292 (435)
T 4e54_B 247 RMHKK-KVTHVALN---PCCDWFLATASVDQTVKIWDLRQVR------------------------------GKASFLYS 292 (435)
T ss_dssp BCCSS-CEEEEEEC---TTCSSEEEEEETTSBCCEEETTTCC------------------------------SSSCCSBC
T ss_pred ecccc-eEEeeeec---CCCceEEEEecCcceeeEEeccccc------------------------------ccceEEEe
Confidence 55544 46777773 444 588999999999999998211 11122233
Q ss_pred ecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccce------eEEEEEEc--CCEEEEE
Q 003423 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA------RVWDCCLT--DSFIITA 324 (821)
Q Consensus 253 ~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~------~i~~v~~~--~~~l~s~ 324 (821)
.+|...|.+++|+|++++|++++.|++|++||+.++.. . ..+..|.. .+..+.|+ +..++++
T Consensus 293 ~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (435)
T 4e54_B 293 LPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC-----P-----LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVG 362 (435)
T ss_dssp CBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSS-----E-----EEECCCCCCCCSSSCCCBCEECSSSSCEEEE
T ss_pred eeccccccceeECCCCCeeEEEcCCCEEEEEECCCCcc-----c-----eEEecccccccccceeEEEEEcCCCCEEEEE
Confidence 57999999999999999999999999999999998754 2 22223221 11223343 2333333
Q ss_pred ------------eCCCeEEEEcC-CCceeeEeec-ccCCCeEEE-EEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 325 ------------GEDCTCRVWGS-DGKQLKMIKE-HIGRGIWRC-LYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 325 ------------~~dg~i~iwd~-~~~~~~~~~~-h~~~~i~~l-~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
..++.|++||. +++.+..+.. |.. .|.++ +|+|+|++|++|+ |+.|++|+++.
T Consensus 363 ~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~-~v~s~~~fspdg~~lasg~-d~~i~iW~~~~ 430 (435)
T 4e54_B 363 RYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESS-GISSLNEFNPMGDTLASAM-GYHILIWSQQE 430 (435)
T ss_dssp CCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCC-CCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred EcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCC-cEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence 34568999999 7888887754 554 68887 6999999999876 78999999854
No 89
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=4.8e-28 Score=261.43 Aligned_cols=204 Identities=17% Similarity=0.239 Sum_probs=170.3
Q ss_pred eeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCC
Q 003423 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (821)
Q Consensus 124 ~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg 203 (821)
.....++|.+.+....+.+ ++..+++++.|+.|++||+.+++....+...+...+.++++ ++++.+|++|+.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~---s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~---s~~~~~l~~~~~dg 156 (401)
T 4aez_A 83 RVLDAPGIIDDYYLNLLDW---SNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKW---SHDGSFLSVGLGNG 156 (401)
T ss_dssp EEEECTTCCCCTTCBCEEE---CTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEE---CTTSSEEEEEETTS
T ss_pred eeeeCCCCcCCceEEEEee---cCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEE---CCCCCEEEEECCCC
Confidence 3445567776655555555 44568888899999999999999888777766667888887 57899999999999
Q ss_pred EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 003423 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283 (821)
Q Consensus 204 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iw 283 (821)
.|++||+. ....+..+.+|.+.|.+++| ++++|++++.||.|++|
T Consensus 157 ~i~iwd~~---------------------------------~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~ 201 (401)
T 4aez_A 157 LVDIYDVE---------------------------------SQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHH 201 (401)
T ss_dssp CEEEEETT---------------------------------TCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred eEEEEECc---------------------------------CCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEE
Confidence 99999998 66778888899999999999 46799999999999999
Q ss_pred ecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCC
Q 003423 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS 360 (821)
Q Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~ 360 (821)
|++.... . . ..+.+|...|.+++|+ +.+|++++.|+.|++||+ .++.+..+..|.. .|.+++|+|++
T Consensus 202 d~~~~~~-----~--~--~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~p~~ 271 (401)
T 4aez_A 202 DVRIANH-----Q--I--GTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNA-AVKAVAWCPWQ 271 (401)
T ss_dssp ETTSSSC-----E--E--EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSS-CCCEEEECTTS
T ss_pred ecccCcc-----e--e--eEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcc-eEEEEEECCCC
Confidence 9985432 1 1 5788899999999998 579999999999999999 6788888888888 69999999976
Q ss_pred -CEEEEEe--CCCcEEEEEcC
Q 003423 361 -SLLVTAG--FDSAIKVHQFQ 378 (821)
Q Consensus 361 -~~l~tg~--~dg~I~iwd~~ 378 (821)
.++++++ .|+.|++||+.
T Consensus 272 ~~ll~~~~gs~d~~i~i~d~~ 292 (401)
T 4aez_A 272 SNLLATGGGTMDKQIHFWNAA 292 (401)
T ss_dssp TTEEEEECCTTTCEEEEEETT
T ss_pred CCEEEEecCCCCCEEEEEECC
Confidence 5666665 79999999984
No 90
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=3.1e-29 Score=260.87 Aligned_cols=251 Identities=17% Similarity=0.189 Sum_probs=193.6
Q ss_pred ccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeec
Q 003423 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKV 143 (821)
Q Consensus 64 ~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~ 143 (821)
+...|.+++|++++ ..+++++.|+.|+|||+..+. ...+..+.+|.+.|++++|+|.
T Consensus 12 H~~~V~~v~~s~~g----------~~lasgs~D~~v~lwd~~~~~-------------~~~~~~l~gH~~~V~~v~~~~~ 68 (316)
T 3bg1_A 12 HEDMIHDAQMDYYG----------TRLATCSSDRSVKIFDVRNGG-------------QILIADLRGHEGPVWQVAWAHP 68 (316)
T ss_dssp --CCEEEEEECGGG----------CEEEEEETTTEEEEEEEETTE-------------EEEEEEEECCSSCEEEEEECCG
T ss_pred ccCeEEEeeEcCCC----------CEEEEEeCCCeEEEEEecCCC-------------cEEEEEEcCCCccEEEEEeCCC
Confidence 34479999999764 245556679999999997532 2356788999999999999861
Q ss_pred CCCCCEEEEEECCCcEEEEEccCCc--eeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCC
Q 003423 144 CNGNRSLAIGCSDNSIRVWDISNSS--IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNS 221 (821)
Q Consensus 144 ~~~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 221 (821)
.++++|++|+.|++|++||+.++. .+..+..|.. .+.+++|.+. .++.+|++|+.||.|++||+...
T Consensus 69 -~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~-~V~~v~~~p~-~~g~~lasgs~D~~i~lwd~~~~-------- 137 (316)
T 3bg1_A 69 -MYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDS-SVNSVCWAPH-DYGLILACGSSDGAISLLTYTGE-------- 137 (316)
T ss_dssp -GGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSS-CCCEEEECCT-TTCSCEEEECSSSCEEEEEECSS--------
T ss_pred -CCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCC-ceEEEEECCC-CCCcEEEEEcCCCCEEEEecCCC--------
Confidence 137899999999999999998874 4555555543 4566666321 13789999999999999999811
Q ss_pred CCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCC-----------------CCEEEEEeCCCeEEEEe
Q 003423 222 PEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC-----------------GSKLVSVSDDRSARIWE 284 (821)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~-----------------~~~l~s~s~Dg~i~iwd 284 (821)
........+.+|...|.+++|+|+ +++|++|+.|++|++||
T Consensus 138 ----------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd 195 (316)
T 3bg1_A 138 ----------------------GQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWK 195 (316)
T ss_dssp ----------------------SCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEE
T ss_pred ----------------------CCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEE
Confidence 011223345689999999999997 46899999999999999
Q ss_pred cccCcccCCCCceeeeceEEeccceeEEEEEEcC------CEEEEEeCCCeEEEEcCCC----c-eeeEeecccCCCeEE
Q 003423 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD------SFIITAGEDCTCRVWGSDG----K-QLKMIKEHIGRGIWR 353 (821)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~------~~l~s~~~dg~i~iwd~~~----~-~~~~~~~h~~~~i~~ 353 (821)
+..... .+.. ..+.+|...|++++|++ .+|++++.|++|++|+++. + ....+..|.. .|++
T Consensus 196 ~~~~~~-----~~~~--~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~-~v~~ 267 (316)
T 3bg1_A 196 EEEDGQ-----WKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFND-VVWH 267 (316)
T ss_dssp ECTTSC-----EEEE--ECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSS-CEEE
T ss_pred eCCCCc-----ccee--eecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCC-cEEE
Confidence 975422 1222 46789999999999984 5799999999999999842 1 2345567777 6999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 354 CLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 354 l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
++|+|++++|++++.||.|++|+..
T Consensus 268 v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 268 VSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999999999999999999999974
No 91
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=4.4e-28 Score=261.71 Aligned_cols=316 Identities=10% Similarity=0.067 Sum_probs=227.5
Q ss_pred cccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecC
Q 003423 65 GIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (821)
Q Consensus 65 ~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~ 144 (821)
...|.+++|+|. .++++..|+.|++|++...... ........+.+|...|++++|+|
T Consensus 16 ~~~i~~~~~~~~------------~l~s~~~dg~i~iw~~~~~~~~---------~~~~~~~~~~~h~~~v~~~~~~~-- 72 (397)
T 1sq9_A 16 DADIFSVSACNS------------FTVSCSGDGYLKVWDNKLLDNE---------NPKDKSYSHFVHKSGLHHVDVLQ-- 72 (397)
T ss_dssp SSCEEEEEECSS------------EEEEEETTSEEEEEESBCCTTC---------CGGGGEEEEECCTTCEEEEEEEE--
T ss_pred hcCeEEEEecCC------------eEEEEcCCCEEEEEECCCcccc---------cCCCcceEEecCCCcEEEEEEec--
Confidence 448999999852 4666777999999999854310 12346778889999999999999
Q ss_pred CC----C---CEEEEEECCCcEEEEEccCCce-----eEEEccCc----ceeEEEEeeccCC-ccCeE-EEEEeeCCEEE
Q 003423 145 NG----N---RSLAIGCSDNSIRVWDISNSSI-----ILEVHSPE----RCLLYSMKLWGDN-LEALR-IASGTIYNEII 206 (821)
Q Consensus 145 ~~----~---~~l~t~~~d~~i~iwd~~~~~~-----~~~~~~~~----~~~~~s~~~~~~s-~~~~~-l~sg~~dg~i~ 206 (821)
+ + ++|++++.|+.|++||+.+++. +..+..+. ...+.++.+.... +++.+ |++|+.||.|+
T Consensus 73 -~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~ 151 (397)
T 1sq9_A 73 -AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTY 151 (397)
T ss_dssp -EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEE
T ss_pred -ccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEE
Confidence 8 8 9999999999999999998886 77777664 4567788874211 67888 99999999999
Q ss_pred EEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE-------ecCCCcEEEEEEcCCCCEEEEEeCCCe
Q 003423 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-------VGHEGSIFRIEWSSCGSKLVSVSDDRS 279 (821)
Q Consensus 207 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~h~~~I~~l~~s~~~~~l~s~s~Dg~ 279 (821)
+||+........ ... ....+...+ ..|...|.+++|+|++ +|++++.|+.
T Consensus 152 iwd~~~~~~~~~-~~~---------------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~ 208 (397)
T 1sq9_A 152 IWKFHPFADESN-SLT---------------------LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGT 208 (397)
T ss_dssp EEEEESSSSHHH-HTT---------------------TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSE
T ss_pred EEeCCccccccc-cce---------------------eeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCc
Confidence 999982000000 000 001111244 3589999999999999 9999999999
Q ss_pred EEEEecccCcccCCCCceeeeceEEec---c---ceeEEEEEEc--CCEEEEEeCC---CeEEEEcC-CCceeeEeec--
Q 003423 280 ARIWEVRAEYWKDSDSIEEVGSSVLYG---H---NARVWDCCLT--DSFIITAGED---CTCRVWGS-DGKQLKMIKE-- 345 (821)
Q Consensus 280 i~iwd~~~~~~~~~~~~~~~~~~~~~~---h---~~~i~~v~~~--~~~l~s~~~d---g~i~iwd~-~~~~~~~~~~-- 345 (821)
|++||+++++. . ..+.. | ...|.+++|+ +.+|++++.| +.|++||+ .++.+..+..
T Consensus 209 i~i~d~~~~~~-----~-----~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~ 278 (397)
T 1sq9_A 209 VQISELSTLRP-----L-----YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT 278 (397)
T ss_dssp EEEEETTTTEE-----E-----EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-
T ss_pred EEEEECCCCce-----e-----EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCc
Confidence 99999988654 3 46666 8 9999999998 5899999999 99999999 7888888888
Q ss_pred -----------ccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC-cCCCcccCCccccccCCCcceEEeecCCccccee
Q 003423 346 -----------HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIR 413 (821)
Q Consensus 346 -----------h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (821)
|.. .|.+++|+|++++|++++.||.|++||+.. ..+..+........ ... ....+...
T Consensus 279 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~-------~~~~g~~~ 348 (397)
T 1sq9_A 279 HSSQASLGEFAHSS-WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE--IEE-------DILAVDEH 348 (397)
T ss_dssp -------CCBSBSS-CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS--SGG-------GCCCBCTT
T ss_pred ccccccccccccCC-cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCccc--chh-------hhhccccc
Confidence 887 699999999999999999999999999954 22222220000000 000 00000001
Q ss_pred ccCCCCcceEEEEeecCC-----------eEEEEecCCcEEEEEe
Q 003423 414 LTDSKSEYVRCLHLTSED-----------TLYIATNHGYLYHTKL 447 (821)
Q Consensus 414 ~~~~~~~~i~~l~f~~~~-----------~~l~~~~~g~~~~~~i 447 (821)
....|...|.+++|+|++ .++.++.+|.+..|++
T Consensus 349 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 349 GDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp SCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred cccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 112346789999999997 4555566777765544
No 92
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-27 Score=247.26 Aligned_cols=288 Identities=19% Similarity=0.280 Sum_probs=228.6
Q ss_pred cceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEee
Q 003423 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (821)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (821)
.+....+.+|.+.|++++| | ++++|++|+.||.|++||+.++.....+..+.. .+.++++ ++++.++++|+.
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~---~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~-~v~~~~~---~~~~~~l~~~~~ 79 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-V---DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQG-FLNSVCY---DSEKELLLFGGK 79 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-E---ETTEEEEEETTSEEEEEEESSSEEEEEEEECSS-CEEEEEE---ETTTTEEEEEET
T ss_pred HHHHHHhhCCCCCcEEEEe-c---CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCc-cEEEEEE---CCCCCEEEEecC
Confidence 5678899999999999999 8 899999999999999999998888777766643 4667777 478999999999
Q ss_pred CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 003423 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (821)
Q Consensus 202 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~ 281 (821)
||.|++|++... .....+..+.+|...|.+++| ++++|++++.|+.|+
T Consensus 80 dg~i~~~~~~~~------------------------------~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~ 127 (313)
T 3odt_A 80 DTMINGVPLFAT------------------------------SGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAK 127 (313)
T ss_dssp TSCEEEEETTCC------------------------------TTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEE
T ss_pred CCeEEEEEeeec------------------------------CCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEE
Confidence 999999998711 133556677899999999999 578999999999999
Q ss_pred EEecccCcccCCCCceeeeceEEeccceeEEEEEEc---CCEEEEEeCCCeEEEEcCCCceeeEeec-ccCCCeEEEEEe
Q 003423 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLKMIKE-HIGRGIWRCLYD 357 (821)
Q Consensus 282 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~-h~~~~i~~l~~~ 357 (821)
+|| .... . ..+..|...|.+++|. ++++++++.|+.+++|| .++....+.. |.. .+.+++++
T Consensus 128 ~~d--~~~~-----~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d-~~~~~~~~~~~~~~-~i~~~~~~ 193 (313)
T 3odt_A 128 VWK--EGSL-----V-----YNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ-NDKVIKTFSGIHND-VVRHLAVV 193 (313)
T ss_dssp EEE--TTEE-----E-----EEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE-TTEEEEEECSSCSS-CEEEEEEE
T ss_pred EEc--CCcE-----E-----EecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe-cCceEEEEeccCcc-cEEEEEEc
Confidence 999 2221 1 5778899999999985 68999999999999999 5566777776 666 79999999
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEe
Q 003423 358 SLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT 437 (821)
Q Consensus 358 ~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~ 437 (821)
|++. +++++.||.|++||++... ....+..|...|.+++|+|++.+++++
T Consensus 194 ~~~~-~~~~~~dg~i~i~d~~~~~-----------------------------~~~~~~~~~~~i~~~~~~~~~~l~~~~ 243 (313)
T 3odt_A 194 DDGH-FISCSNDGLIKLVDMHTGD-----------------------------VLRTYEGHESFVYCIKLLPNGDIVSCG 243 (313)
T ss_dssp ETTE-EEEEETTSEEEEEETTTCC-----------------------------EEEEEECCSSCEEEEEECTTSCEEEEE
T ss_pred CCCe-EEEccCCCeEEEEECCchh-----------------------------hhhhhhcCCceEEEEEEecCCCEEEEe
Confidence 9988 9999999999999995421 111223456779999999999888888
Q ss_pred cCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCC
Q 003423 438 NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVH 506 (821)
Q Consensus 438 ~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~ 506 (821)
.+|.+. +|+..+......... +..++.++.+.++. . +++++.||.|++|++.+...
T Consensus 244 ~dg~v~---iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~--------~-~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 244 EDRTVR---IWSKENGSLKQVITL-PAISIWSVDCMSNG--------D-IIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp TTSEEE---EECTTTCCEEEEEEC-SSSCEEEEEECTTS--------C-EEEEETTSCEEEEESCGGGC
T ss_pred cCCEEE---EEECCCCceeEEEec-cCceEEEEEEccCC--------C-EEEEeCCCcEEEEeCCCCce
Confidence 888886 555444443333333 35678888886543 4 66799999999999887554
No 93
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=7.2e-29 Score=258.13 Aligned_cols=259 Identities=17% Similarity=0.150 Sum_probs=189.7
Q ss_pred eeeccceeeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCe--eeeEEEeeccccEEeEEeccccCCCCCCcc
Q 003423 9 WRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT--LIRPFQVFHGIRLHGISCNFINCTEGSVST 85 (821)
Q Consensus 9 w~~~~~~~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~--~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~ 85 (821)
.+..-..|.++|++++|+ |+ +++|++|. |+.|+|||+.+++ .+..++.|.. .|.+++|++. .++
T Consensus 5 ~~~~~~~H~~~V~~v~~s--~~----g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~-~V~~v~~~~~-----~~~- 71 (316)
T 3bg1_A 5 INTVDTSHEDMIHDAQMD--YY----GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEG-PVWQVAWAHP-----MYG- 71 (316)
T ss_dssp ---------CCEEEEEEC--GG----GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSS-CEEEEEECCG-----GGS-
T ss_pred eeeecccccCeEEEeeEc--CC----CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCc-cEEEEEeCCC-----CCC-
Confidence 333344589999999999 98 67777766 8999999999875 4567776655 7999999743 011
Q ss_pred ceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCC--CCEEEEEECCCcEEEEE
Q 003423 86 RVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG--NRSLAIGCSDNSIRVWD 163 (821)
Q Consensus 86 ~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~--~~~l~t~~~d~~i~iwd 163 (821)
..++.++.|+.|++||+..+. .+....+.+|.+.|++++|+| + +.+|++|+.|++|++||
T Consensus 72 --~~l~s~s~D~~v~iWd~~~~~-------------~~~~~~~~~h~~~V~~v~~~p---~~~g~~lasgs~D~~i~lwd 133 (316)
T 3bg1_A 72 --NILASCSYDRKVIIWREENGT-------------WEKSHEHAGHDSSVNSVCWAP---HDYGLILACGSSDGAISLLT 133 (316)
T ss_dssp --SCEEEEETTSCEEEECCSSSC-------------CCEEEEECCCSSCCCEEEECC---TTTCSCEEEECSSSCEEEEE
T ss_pred --CEEEEEECCCEEEEEECCCCc-------------ceEEEEccCCCCceEEEEECC---CCCCcEEEEEcCCCCEEEEe
Confidence 246666779999999987542 345667889999999999999 6 78999999999999999
Q ss_pred ccCCcee---EEEccCcceeEEEEeeccCC--------------ccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcc
Q 003423 164 ISNSSII---LEVHSPERCLLYSMKLWGDN--------------LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (821)
Q Consensus 164 ~~~~~~~---~~~~~~~~~~~~s~~~~~~s--------------~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~ 226 (821)
+.++... ..+..+. ..+.++.+.+.. .++.+|++|+.|+.|++||+...
T Consensus 134 ~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~------------- 199 (316)
T 3bg1_A 134 YTGEGQWEVKKINNAHT-IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED------------- 199 (316)
T ss_dssp ECSSSCEEECCBTTSSS-SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT-------------
T ss_pred cCCCCCcceeeeecccc-CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC-------------
Confidence 9876322 2222222 223334442211 12468999999999999998710
Q ss_pred cCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCC----CEEEEEeCCCeEEEEecccCcccCCCCceeeece
Q 003423 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG----SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS 302 (821)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~----~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 302 (821)
.....+..+.+|.+.|.+++|+|++ ++|++++.|++|++|++.+... .... ..
T Consensus 200 -----------------~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~-----~~~~-~~ 256 (316)
T 3bg1_A 200 -----------------GQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASS-----NTWS-PK 256 (316)
T ss_dssp -----------------SCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTC-----CCCB-CC
T ss_pred -----------------CccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccc-----cchh-hh
Confidence 0224566788999999999999986 7899999999999999986321 0000 03
Q ss_pred EEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC
Q 003423 303 VLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS 335 (821)
Q Consensus 303 ~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~ 335 (821)
.+.+|...|++++|+ +.+|++++.|++|++|+.
T Consensus 257 ~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 257 LLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp EEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred hhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence 556789999999999 579999999999999997
No 94
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=2.1e-27 Score=259.53 Aligned_cols=198 Identities=23% Similarity=0.417 Sum_probs=171.8
Q ss_pred eeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCE
Q 003423 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE 204 (821)
Q Consensus 125 ~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~ 204 (821)
+....+|...|+++++ ++++|++|+.||.|++||+.+++.+..+..|... +.++.+ ++.+|++|+.||.
T Consensus 126 ~~~~~~~~~~v~~~~~-----d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~-----~~~~l~sg~~dg~ 194 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY-----DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGS-VLCLQY-----DERVIITGSSDST 194 (435)
T ss_dssp EECCCSSCCCEEEEEC-----CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSC-EEEEEC-----CSSEEEEEETTSC
T ss_pred EecccCCCCcEEEEEE-----CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCc-EEEEEE-----CCCEEEEEcCCCe
Confidence 3444567788998875 6789999999999999999999999888877654 566665 6789999999999
Q ss_pred EEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 003423 205 IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (821)
Q Consensus 205 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd 284 (821)
|++||+. +.+.+..+.+|.+.|.+++|++ .+|++|+.||+|++||
T Consensus 195 i~vwd~~---------------------------------~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd 239 (435)
T 1p22_A 195 VRVWDVN---------------------------------TGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWD 239 (435)
T ss_dssp EEEEESS---------------------------------SCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEE
T ss_pred EEEEECC---------------------------------CCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEe
Confidence 9999998 6677888899999999999974 5999999999999999
Q ss_pred cccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEE
Q 003423 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLL 363 (821)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l 363 (821)
+.++.. .... ..+.+|...|.+++|.++++++++.||.|++||+ +++.+..+.+|.. .|.+++++ ++++
T Consensus 240 ~~~~~~-----~~~~--~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~--~~~l 309 (435)
T 1p22_A 240 MASPTD-----ITLR--RVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLV 309 (435)
T ss_dssp CSSSSC-----CEEE--EEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEE
T ss_pred CCCCCC-----ceee--eEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCC-cEEEEEeC--CCEE
Confidence 988754 3222 4678899999999999999999999999999999 7888999999988 69999884 6899
Q ss_pred EEEeCCCcEEEEEcC
Q 003423 364 VTAGFDSAIKVHQFQ 378 (821)
Q Consensus 364 ~tg~~dg~I~iwd~~ 378 (821)
++|+.||.|++||++
T Consensus 310 ~~g~~dg~i~iwd~~ 324 (435)
T 1p22_A 310 VSGSSDNTIRLWDIE 324 (435)
T ss_dssp EEEETTSCEEEEETT
T ss_pred EEEeCCCeEEEEECC
Confidence 999999999999985
No 95
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=7.4e-28 Score=255.53 Aligned_cols=297 Identities=10% Similarity=0.050 Sum_probs=205.5
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCC-------eEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEe---
Q 003423 256 EGSIFRIEWSSCGSKLVSVSDDR-------SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAG--- 325 (821)
Q Consensus 256 ~~~I~~l~~s~~~~~l~s~s~Dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~--- 325 (821)
.-+|++++|+||+++|++|+.|. .|++|++..................+.+|...|.++++.++.++++.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN 93 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence 35899999999999999998654 59999997654310000111111356788888999999988888764
Q ss_pred --------CCCeEEEEcCC-C-ceeeEee--------cccCCCeEEEEEecCCCEEEEEe--CCCcEEEEEcCCcCCCcc
Q 003423 326 --------EDCTCRVWGSD-G-KQLKMIK--------EHIGRGIWRCLYDSLSSLLVTAG--FDSAIKVHQFQAFLPGSL 385 (821)
Q Consensus 326 --------~dg~i~iwd~~-~-~~~~~~~--------~h~~~~i~~l~~~~~~~~l~tg~--~dg~I~iwd~~~~~~~~~ 385 (821)
.|+.+|+|+++ + ..+.... .+.. .+.+++|+|||+++++++ .|+.|++||++...
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~---- 168 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADD-YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT---- 168 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTC-CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE----
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCccc-CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc----
Confidence 57789999872 2 2222211 1222 488999999999876544 78999999985421
Q ss_pred cCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCc
Q 003423 386 ESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGM 465 (821)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~ 465 (821)
.+.. + .+...|.+++|+|++++++++.++.+..+....... ........+..
T Consensus 169 -------------~~~~------------~-~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~--~~~~~~~~~~~ 220 (365)
T 4h5i_A 169 -------------EKFE------------I-ETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSC--IARKTDFDKNW 220 (365)
T ss_dssp -------------EEEE------------E-ECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCE--EEEECCCCTTE
T ss_pred -------------EEEE------------e-CCCCceEEEEEccCCceEEeccceeEEEEEeccCcc--eeeeecCCCCC
Confidence 0111 1 134569999999999999998888776544333221 11222333466
Q ss_pred ceEEEeccCCCCCCCCCCCcEEEEecCCc----cEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEE
Q 003423 466 PIICMDLLSNEPKYPCGIDDWVALGDGKG----NMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTA 541 (821)
Q Consensus 466 ~i~~~~~~~~~~~~s~~~~~~l~~g~~~g----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 541 (821)
.+.++.+.+ ++..+++++.++ .+++|++............+. .....+. ..+++|++++||+|
T Consensus 221 ~v~~v~fsp--------dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~V~--~~~~Spdg~~lasg 287 (365)
T 4h5i_A 221 SLSKINFIA--------DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVT---NRFKGIT--SMDVDMKGELAVLA 287 (365)
T ss_dssp EEEEEEEEE--------TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEE---SSCSCEE--EEEECTTSCEEEEE
T ss_pred CEEEEEEcC--------CCCEEEEEecCCcceeEEeecccccceecceeeeeec---CCCCCeE--eEEECCCCCceEEE
Confidence 777777765 458888888776 577788765432111111111 1112222 24578999999999
Q ss_pred CCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCcc
Q 003423 542 DPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (821)
Q Consensus 542 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~ 612 (821)
+.|+.|+|||+.+. +++..+..+|...|++++||||+++||+|+.|++|+||++..+
T Consensus 288 s~D~~V~iwd~~~~--------------~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 288 SNDNSIALVKLKDL--------------SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp ETTSCEEEEETTTT--------------EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred cCCCEEEEEECCCC--------------cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999877 6666665789999999999999999999999999999999754
No 96
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=8.3e-28 Score=254.26 Aligned_cols=299 Identities=13% Similarity=0.113 Sum_probs=209.4
Q ss_pred eeeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCC----eeeeEEEeeccccEEeEEeccccCCCCCCccceee
Q 003423 15 QYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG----TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (821)
Q Consensus 15 ~~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~----~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~ 89 (821)
.|.++|++++|+ |+ +.+|++|. |+.|+|||+.++ +.+..+..+.. .|.+++|++. .++ ..
T Consensus 9 gH~~~v~~~~~~--~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~-----~d~---~~ 73 (351)
T 3f3f_A 9 GHDDLVHDVVYD--FY----GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDS-SIVAIDWASP-----EYG---RI 73 (351)
T ss_dssp CCSSCEEEEEEC--SS----SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSS-CEEEEEECCG-----GGC---SE
T ss_pred ccccceeEEEEc--CC----CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCC-cEEEEEEcCC-----CCC---CE
Confidence 378899999999 98 66777665 899999999976 45666665554 7999999963 011 24
Q ss_pred EEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCC--CCEEEEEECCCcEEEEEccCC
Q 003423 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG--NRSLAIGCSDNSIRVWDISNS 167 (821)
Q Consensus 90 ~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~--~~~l~t~~~d~~i~iwd~~~~ 167 (821)
++++..|+.|++|++..+..... ....+....+.+|.+.|.+++|+| + +.+|++++.|+.|++||+.++
T Consensus 74 l~s~~~dg~v~vwd~~~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~l~~~~~dg~v~iwd~~~~ 144 (351)
T 3f3f_A 74 IASASYDKTVKLWEEDPDQEECS------GRRWNKLCTLNDSKGSLYSVKFAP---AHLGLKLACLGNDGILRLYDALEP 144 (351)
T ss_dssp EEEEETTSCEEEEEECTTSCTTS------SCSEEEEEEECCCSSCEEEEEECC---GGGCSEEEEEETTCEEEEEECSST
T ss_pred EEEEcCCCeEEEEecCCCccccc------ccCcceeeeecccCCceeEEEEcC---CCCCcEEEEecCCCcEEEecCCCh
Confidence 56666789999999986531110 012356778889999999999999 8 999999999999999999887
Q ss_pred ceeEEEc------------cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcc
Q 003423 168 SIILEVH------------SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (821)
Q Consensus 168 ~~~~~~~------------~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (821)
+.+..+. ......+.++.+.+...++.++++++.++.+.+|+...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~----------------------- 201 (351)
T 3f3f_A 145 SDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD----------------------- 201 (351)
T ss_dssp TCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTT-----------------------
T ss_pred HHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCC-----------------------
Confidence 6543221 12333456677644333488999999999998887661
Q ss_pred eeeecccccceeeEEEEecCCCcEEEEEEcCCC----CEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeE
Q 003423 236 CFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG----SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311 (821)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~----~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i 311 (821)
.....+..+.+|.+.|.+++|+|++ ++|++++.||.|++||+..+.. .. ....+...+
T Consensus 202 --------~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~-----~~~~~~~~~ 263 (351)
T 3f3f_A 202 --------GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLS-----PL-----ASEESLTNS 263 (351)
T ss_dssp --------SCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------------
T ss_pred --------CceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcC-----cc-----ccCCcccce
Confidence 1334577788999999999999998 7999999999999999987643 11 111111111
Q ss_pred EEEEEc------CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 312 WDCCLT------DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 312 ~~v~~~------~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
...... ......+.....+.+|+. ..+.+..+.+|.. .|++++|+|++++|++++.||.|++|+++.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 264 NMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG-EVWSVSWNLTGTILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp ---------------------------CCSEEEEEEEEECTTSS-CEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred eccCCCcccccccccccccccceeeeecccccccEEEEEecccc-cEEEEEEcCCCCEEEEecCCCcEEEEecCc
Confidence 111111 122233344556666766 5678888999988 699999999999999999999999999964
No 97
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=2.4e-27 Score=260.45 Aligned_cols=300 Identities=14% Similarity=0.189 Sum_probs=211.8
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCe-----------eeeEEEeec-----------cccEEeEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT-----------LIRPFQVFH-----------GIRLHGIS 72 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~-----------~~~~~~~~~-----------~~~i~~i~ 72 (821)
+.++|++++|+ |+ +.+|++|. |+.|+|||+.+++ ++..++.|. ...|.+++
T Consensus 27 ~~~~V~~v~~s--~~----g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~ 100 (447)
T 3dw8_B 27 EADIISTVEFN--HS----GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIR 100 (447)
T ss_dssp GGGSEEEEEEC--SS----SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEE
T ss_pred ccCcEEEEEEC--CC----CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEE
Confidence 56899999999 98 67777766 8999999999887 467777654 14699999
Q ss_pred eccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCc------------ccccc------------ceeee-
Q 003423 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPE------------TCVNL------------SLVQS- 127 (821)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~------------~~~~~------------~~~~~- 127 (821)
|+|+. .. ..++++..|+.|++|++.........+... ..+.+ .....
T Consensus 101 ~~~~~----~~----~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
T 3dw8_B 101 WLPQK----NA----AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF 172 (447)
T ss_dssp ECCCC----SS----SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred EcCCC----Cc----ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence 99662 10 146777789999999998632100000000 00000 11112
Q ss_pred ccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCC-ceeEEE------ccCcceeEEEEeeccCCccC-eEEEEE
Q 003423 128 LPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-SIILEV------HSPERCLLYSMKLWGDNLEA-LRIASG 199 (821)
Q Consensus 128 ~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~-~~~~~~------~~~~~~~~~s~~~~~~s~~~-~~l~sg 199 (821)
..+|.+.|++++|+| ++++|++| .|+.|++||+.+. ..+..+ ...+...+.+++| +|++ .+|++|
T Consensus 173 ~~~h~~~v~~~~~~~---~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~p~~~~~l~s~ 245 (447)
T 3dw8_B 173 ANAHTYHINSISINS---DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEF---HPNSCNTFVYS 245 (447)
T ss_dssp CSCCSSCCCEEEECT---TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEE---CSSCTTEEEEE
T ss_pred ccCCCcceEEEEEcC---CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEE---CCCCCcEEEEE
Confidence 478999999999999 99999998 7999999999843 344322 1233445778887 5777 899999
Q ss_pred eeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCC------------cEEEEEEcCC
Q 003423 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG------------SIFRIEWSSC 267 (821)
Q Consensus 200 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~------------~I~~l~~s~~ 267 (821)
+.||.|++||+..... .......+.+|.. .|.+++|+|+
T Consensus 246 ~~dg~i~iwd~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 296 (447)
T 3dw8_B 246 SSKGTIRLCDMRASAL-----------------------------CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS 296 (447)
T ss_dssp ETTSCEEEEETTTCSS-----------------------------SCTTCEEECCC-----CCHHHHHTTCEEEEEECTT
T ss_pred eCCCeEEEEECcCCcc-----------------------------ccceeeEeccCCCccccccccccCceEEEEEECCC
Confidence 9999999999982110 0011445555654 9999999999
Q ss_pred CCEEEEEeCCCeEEEEeccc-CcccCCCCceeeeceEEecccee---------------EEEEEEc--CCEEEEEeCCCe
Q 003423 268 GSKLVSVSDDRSARIWEVRA-EYWKDSDSIEEVGSSVLYGHNAR---------------VWDCCLT--DSFIITAGEDCT 329 (821)
Q Consensus 268 ~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~h~~~---------------i~~v~~~--~~~l~s~~~dg~ 329 (821)
+++|++++. +.|++||++. ++. . ..+.+|... +..++|+ +.+|++++.||.
T Consensus 297 g~~l~~~~~-~~v~iwd~~~~~~~-----~-----~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~ 365 (447)
T 3dw8_B 297 GRYMMTRDY-LSVKVWDLNMENRP-----V-----ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNF 365 (447)
T ss_dssp SSEEEEEES-SEEEEEETTCCSSC-----S-----CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTE
T ss_pred CCEEEEeeC-CeEEEEeCCCCccc-----c-----ceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCE
Confidence 999999999 9999999986 443 3 355666532 3348888 579999999999
Q ss_pred EEEEcCCCceeeEeeccc--------------------------------CCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 330 CRVWGSDGKQLKMIKEHI--------------------------------GRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 330 i~iwd~~~~~~~~~~~h~--------------------------------~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
|++||+.......+..+. ...|..++|+|++++||+++.++ +.+|.-
T Consensus 366 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 366 FRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp EEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred EEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 999999433333333221 12588999999999999998876 778764
No 98
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=2.7e-27 Score=252.50 Aligned_cols=206 Identities=11% Similarity=0.192 Sum_probs=164.0
Q ss_pred cceeeeccCCCCcEEEEEEeecCCC---CCEEEEEECCCcEEEEEccC-Ccee-EEEccCcceeEEEEeeccCCccCeEE
Q 003423 122 LSLVQSLPRLSHWVFDVCFLKVCNG---NRSLAIGCSDNSIRVWDISN-SSII-LEVHSPERCLLYSMKLWGDNLEALRI 196 (821)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~---~~~l~t~~~d~~i~iwd~~~-~~~~-~~~~~~~~~~~~s~~~~~~s~~~~~l 196 (821)
.+.+..+.+|.+.|++++|+| + +++|++|+.||.|++||+.+ +..+ ..+..+. ..+.+++| ++++.+|
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~---~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~-~~v~~~~~---~~~~~~l 101 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSP---PTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHT-GPVLDVCW---SDDGSKV 101 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECC---TTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECS-SCEEEEEE---CTTSSEE
T ss_pred cceeEeccCCCCceEEEEEcC---CCCCceEEEEECCCCcEEEEEcCCCCceeEEEecccc-CCEEEEEE---CcCCCEE
Confidence 567788899999999999999 7 69999999999999999997 5554 4455444 45677777 5789999
Q ss_pred EEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEE--cCCCCEEEEE
Q 003423 197 ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEW--SSCGSKLVSV 274 (821)
Q Consensus 197 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~--s~~~~~l~s~ 274 (821)
++|+.||.|++||+. ....+. +.+|...|.+++| +|++++|+++
T Consensus 102 ~s~~~dg~v~iwd~~---------------------------------~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~ 147 (368)
T 3mmy_A 102 FTASCDKTAKMWDLS---------------------------------SNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTG 147 (368)
T ss_dssp EEEETTSEEEEEETT---------------------------------TTEEEE-EEECSSCEEEEEEEECSSCEEEEEE
T ss_pred EEEcCCCcEEEEEcC---------------------------------CCCcee-eccccCceEEEEEEeCCCCCEEEEc
Confidence 999999999999998 334443 5679999999999 8999999999
Q ss_pred eCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEcCCC--ceeeEeecccCCCeE
Q 003423 275 SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDG--KQLKMIKEHIGRGIW 352 (821)
Q Consensus 275 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~h~~~~i~ 352 (821)
+.|+.|++||+++++. . ..+..| ..+.++.+.+..+++++.++.+++|++.. .............+.
T Consensus 148 ~~dg~i~vwd~~~~~~-----~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 216 (368)
T 3mmy_A 148 SWDKTLKFWDTRSSNP-----M-----MVLQLP-ERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHR 216 (368)
T ss_dssp ETTSEEEEECSSCSSC-----S-----EEEECS-SCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEE
T ss_pred cCCCcEEEEECCCCcE-----E-----EEEecC-CCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCc
Confidence 9999999999998765 3 244444 46788888888999999999999999943 233333322223467
Q ss_pred EEEEecCCCE----EEEEeCCCcEEEEEcCC
Q 003423 353 RCLYDSLSSL----LVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 353 ~l~~~~~~~~----l~tg~~dg~I~iwd~~~ 379 (821)
++++.++... +++++.||.|++|+++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 217 CVAIFKDKQNKPTGFALGSIEGRVAIHYINP 247 (368)
T ss_dssp EEEEEECTTSCEEEEEEEETTSEEEEEESSC
T ss_pred eEEEcccCCCCCCeEEEecCCCcEEEEecCC
Confidence 7777665544 99999999999999954
No 99
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.96 E-value=6.6e-27 Score=246.84 Aligned_cols=200 Identities=15% Similarity=0.085 Sum_probs=163.9
Q ss_pred eeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc---eeEEEccCcceeEEEEeeccCCccCe-EEEEEee
Q 003423 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS---IILEVHSPERCLLYSMKLWGDNLEAL-RIASGTI 201 (821)
Q Consensus 126 ~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~s~~~~~~s~~~~-~l~sg~~ 201 (821)
....+|.+.|++++|+| ++++|++|+.|+.|++||+.++. ....+..+ ...+.++++ ++++. +|++|+.
T Consensus 5 ~~~~~h~~~v~~~~~s~---~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~-~~~v~~~~~---~~~~~~~l~~~~~ 77 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIP---SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRY-KHPLLCCNF---IDNTDLQIYVGTV 77 (342)
T ss_dssp ECSSCCSSCEEEEEEEG---GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEEC-SSCEEEEEE---EESSSEEEEEEET
T ss_pred ecccCCCCcEEEEEEcC---CCCEEEEEcCCCeEEEEEeCCCCccccceeeeec-CCceEEEEE---CCCCCcEEEEEcC
Confidence 34568999999999999 99999999999999999999877 23333333 334667776 46788 9999999
Q ss_pred CCEEEEEEc-ccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEec--CCCcEEEEEEcCCCCEEEEEeCCC
Q 003423 202 YNEIIVWKV-DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG--HEGSIFRIEWSSCGSKLVSVSDDR 278 (821)
Q Consensus 202 dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~I~~l~~s~~~~~l~s~s~Dg 278 (821)
||.|++||+ . .. ....+.+ |...|.+++|+| +++|++++.|+
T Consensus 78 dg~i~~wd~~~---------------------------------~~-~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~ 122 (342)
T 1yfq_A 78 QGEILKVDLIG---------------------------------SP-SFQALTNNEANLGICRICKYG-DDKLIAASWDG 122 (342)
T ss_dssp TSCEEEECSSS---------------------------------SS-SEEECBSCCCCSCEEEEEEET-TTEEEEEETTS
T ss_pred CCeEEEEEecc---------------------------------CC-ceEeccccCCCCceEEEEeCC-CCEEEEEcCCC
Confidence 999999999 6 22 2356678 999999999999 99999999999
Q ss_pred eEEEEeccc---------CcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEcCCC--ce--eeEeec
Q 003423 279 SARIWEVRA---------EYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDG--KQ--LKMIKE 345 (821)
Q Consensus 279 ~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~~~--~~--~~~~~~ 345 (821)
.|++||+++ .+. . ....|...|.+++|+++.+++++.|+.|++||+.. .. ......
T Consensus 123 ~i~iwd~~~~~~~~~~~~~~~-----~------~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 191 (342)
T 1yfq_A 123 LIEVIDPRNYGDGVIAVKNLN-----S------NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESG 191 (342)
T ss_dssp EEEEECHHHHTTBCEEEEESC-----S------SSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECS
T ss_pred eEEEEcccccccccccccCCe-----e------eEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecC
Confidence 999999987 443 2 22238899999999988899999999999999943 32 223444
Q ss_pred ccCCCeEEEEEec-CCCEEEEEeCCCcEEEEEcCC
Q 003423 346 HIGRGIWRCLYDS-LSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 346 h~~~~i~~l~~~~-~~~~l~tg~~dg~I~iwd~~~ 379 (821)
|.. .|.+++|+| +++++++++.||.|++|+++.
T Consensus 192 ~~~-~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~ 225 (342)
T 1yfq_A 192 LKY-QIRDVALLPKEQEGYACSSIDGRVAVEFFDD 225 (342)
T ss_dssp CSS-CEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred CCC-ceeEEEECCCCCCEEEEEecCCcEEEEEEcC
Confidence 555 699999999 999999999999999999853
No 100
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.96 E-value=3.7e-27 Score=248.78 Aligned_cols=275 Identities=14% Similarity=0.080 Sum_probs=217.2
Q ss_pred eeeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCe---eeeEEEeeccccEEeEEeccccCCCCCCcccee-e
Q 003423 15 QYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT---LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVT-F 89 (821)
Q Consensus 15 ~~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~---~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~-~ 89 (821)
.|.++|++++|+ |+ +.+|+++. |+.|+|||+.+++ .+..+.. +...|.+++|++++ . .
T Consensus 9 ~h~~~v~~~~~s--~~----~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~----------~~~ 71 (342)
T 1yfq_A 9 APKDYISDIKII--PS----KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR-YKHPLLCCNFIDNT----------DLQ 71 (342)
T ss_dssp CCSSCEEEEEEE--GG----GTEEEEEETTSEEEEEEEETTTTEEEEEEEEE-CSSCEEEEEEEESS----------SEE
T ss_pred CCCCcEEEEEEc--CC----CCEEEEEcCCCeEEEEEeCCCCccccceeeee-cCCceEEEEECCCC----------CcE
Confidence 478899999999 98 56666655 8999999999887 2334444 34479999999764 3 3
Q ss_pred EEEEEcCCeEEEEEE-eecCCCCCCCCCccccccceeeeccC--CCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccC
Q 003423 90 EVALFGEKRVKLFEL-NFELSPNSQYQPETCVNLSLVQSLPR--LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (821)
Q Consensus 90 ~l~~~g~~~v~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~ 166 (821)
++++..++.|++|++ ..+. ...+.+ |...|.+++|+| +++|++++.|+.|++||+.+
T Consensus 72 l~~~~~dg~i~~wd~~~~~~----------------~~~~~~~~~~~~v~~l~~~~----~~~l~s~~~d~~i~iwd~~~ 131 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPS----------------FQALTNNEANLGICRICKYG----DDKLIAASWDGLIEVIDPRN 131 (342)
T ss_dssp EEEEETTSCEEEECSSSSSS----------------EEECBSCCCCSCEEEEEEET----TTEEEEEETTSEEEEECHHH
T ss_pred EEEEcCCCeEEEEEeccCCc----------------eEeccccCCCCceEEEEeCC----CCEEEEEcCCCeEEEEcccc
Confidence 555666899999998 6432 366778 999999999996 56899999999999999987
Q ss_pred ---------CceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCccee
Q 003423 167 ---------SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF 237 (821)
Q Consensus 167 ---------~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (821)
++.+..+. ....+.++.+ ++++ +++++.++.|++||+...
T Consensus 132 ~~~~~~~~~~~~~~~~~--~~~~v~~~~~---~~~~--l~~~~~d~~i~i~d~~~~------------------------ 180 (342)
T 1yfq_A 132 YGDGVIAVKNLNSNNTK--VKNKIFTMDT---NSSR--LIVGMNNSQVQWFRLPLC------------------------ 180 (342)
T ss_dssp HTTBCEEEEESCSSSSS--SCCCEEEEEE---CSSE--EEEEESTTEEEEEESSCC------------------------
T ss_pred cccccccccCCeeeEEe--eCCceEEEEe---cCCc--EEEEeCCCeEEEEECCcc------------------------
Confidence 65554444 3345677777 3444 999999999999999810
Q ss_pred eecccccceeeEEEEecCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecccC------cccCCCCceeeeceEEeccce-
Q 003423 238 KLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAE------YWKDSDSIEEVGSSVLYGHNA- 309 (821)
Q Consensus 238 ~~~~~~~~~~~~~~~~~h~~~I~~l~~s~-~~~~l~s~s~Dg~i~iwd~~~~------~~~~~~~~~~~~~~~~~~h~~- 309 (821)
...........|...|.+++|+| +++++++++.||.|++|++... .. . ..+..|..
T Consensus 181 ------~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-----~-----~~~~~~~~~ 244 (342)
T 1yfq_A 181 ------EDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK-----R-----FAFRCHRLN 244 (342)
T ss_dssp ------TTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT-----C-----EEEECCCCC
T ss_pred ------ccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccc-----c-----eeeeccccc
Confidence 01122334457899999999999 9999999999999999999876 22 2 45666654
Q ss_pred --------eEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecc-cCCCeEEEEEecCCCEEEEEeCCCc-EEEEE
Q 003423 310 --------RVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEH-IGRGIWRCLYDSLSSLLVTAGFDSA-IKVHQ 376 (821)
Q Consensus 310 --------~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h-~~~~i~~l~~~~~~~~l~tg~~dg~-I~iwd 376 (821)
.|.+++|+ +.+|++++.||.|++||+ +++.+..+..| .. .|++++ |++++|++++.||. .+.+.
T Consensus 245 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~-~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED-SVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSS-EEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred ccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCC-CceEec--CCCCeEEEEecCCccccccc
Confidence 99999998 578999999999999999 68889999998 77 699999 99999999999998 44443
No 101
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=2.4e-27 Score=252.80 Aligned_cols=280 Identities=16% Similarity=0.203 Sum_probs=216.4
Q ss_pred eeeeeEEEEEeccCCCCCC--cceEEeec-CCeEEEEECCC-Ceee-eEEEeeccccEEeEEeccccCCCCCCccceeeE
Q 003423 16 YLGEISALCFVHLPSHLSS--LPFLLAGS-GSQVLLYDLEA-GTLI-RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~--~~~l~~g~-~~~i~iwd~~t-~~~~-~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~ 90 (821)
|.++|++++|+ |+ . +.+|++|. |+.|+|||+.+ ++.+ ..+..+. ..|.+++|+|++ ..+
T Consensus 38 h~~~v~~~~~~--~~---~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~----------~~l 101 (368)
T 3mmy_A 38 PDDSIGCLSFS--PP---TLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHT-GPVLDVCWSDDG----------SKV 101 (368)
T ss_dssp CSSCEEEEEEC--CT---TSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECS-SCEEEEEECTTS----------SEE
T ss_pred CCCceEEEEEc--CC---CCCceEEEEECCCCcEEEEEcCCCCceeEEEecccc-CCEEEEEECcCC----------CEE
Confidence 88999999999 87 3 36777765 89999999997 6555 5565544 479999999763 256
Q ss_pred EEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEE--eecCCCCCEEEEEECCCcEEEEEccCCc
Q 003423 91 VALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCF--LKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (821)
Q Consensus 91 l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~--~~~~~~~~~l~t~~~d~~i~iwd~~~~~ 168 (821)
+++..|+.|++||+.... ...+.+|...|++++| +| ++++|++|+.|+.|++||+.+++
T Consensus 102 ~s~~~dg~v~iwd~~~~~----------------~~~~~~~~~~v~~~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 102 FTASCDKTAKMWDLSSNQ----------------AIQIAQHDAPVKTIHWIKAP---NYSCVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp EEEETTSEEEEEETTTTE----------------EEEEEECSSCEEEEEEEECS---SCEEEEEEETTSEEEEECSSCSS
T ss_pred EEEcCCCcEEEEEcCCCC----------------ceeeccccCceEEEEEEeCC---CCCEEEEccCCCcEEEEECCCCc
Confidence 666679999999987432 2335679999999999 67 88999999999999999999999
Q ss_pred eeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceee
Q 003423 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (821)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (821)
.+..+..+.... ++.+ ....+++++.++.+++|++.. ....
T Consensus 163 ~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~i~~~~~~~--------------------------------~~~~ 203 (368)
T 3mmy_A 163 PMMVLQLPERCY--CADV-----IYPMAVVATAERGLIVYQLEN--------------------------------QPSE 203 (368)
T ss_dssp CSEEEECSSCEE--EEEE-----ETTEEEEEEGGGCEEEEECSS--------------------------------SCEE
T ss_pred EEEEEecCCCce--EEEe-----cCCeeEEEeCCCcEEEEEecc--------------------------------ccch
Confidence 888888776433 3333 344788889999999999981 1111
Q ss_pred EEE-EecCCCcEEEEEEcCCCCE----EEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccce------------eE
Q 003423 249 LFR-LVGHEGSIFRIEWSSCGSK----LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA------------RV 311 (821)
Q Consensus 249 ~~~-~~~h~~~I~~l~~s~~~~~----l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~------------~i 311 (821)
... ...+...+.++++.++... +++++.|+.|++||+..... .... ..+.+|.. .|
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~v 276 (368)
T 3mmy_A 204 FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP-----AKDN--FTFKCHRSNGTNTSAPQDIYAV 276 (368)
T ss_dssp EEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH-----HHHS--EEEECSEEC----CCCEEECCE
T ss_pred hhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc-----cccc--eeeeeeecccccccccccccce
Confidence 111 1234455666666655543 99999999999999987632 1111 45666665 79
Q ss_pred EEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 312 WDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 312 ~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
++++|+ +.+|++++.||.|++||+ +++++..+..|.. .|++++|+|++++|++++.|+..+.|++
T Consensus 277 ~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 277 NGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ-PISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp EEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS-CEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred EEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCC-CceEEEECCCCCeEEEEecccccccccc
Confidence 999998 469999999999999999 6888999999988 6999999999999999999986655554
No 102
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=8.4e-27 Score=256.06 Aligned_cols=322 Identities=12% Similarity=0.148 Sum_probs=220.4
Q ss_pred ccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCC-----------
Q 003423 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS----------- 132 (821)
Q Consensus 64 ~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----------- 132 (821)
+...|.+++|+|++ ..++++..|+.|+||++........ .....++....+.+|.
T Consensus 27 ~~~~V~~v~~s~~g----------~~la~g~~dg~v~iw~~~~~~~~~~----~~~~~~~~~~~~~~h~~~~~~~~~~~~ 92 (447)
T 3dw8_B 27 EADIISTVEFNHSG----------ELLATGDKGGRVVIFQQEQENKIQS----HSRGEYNVYSTFQSHEPEFDYLKSLEI 92 (447)
T ss_dssp GGGSEEEEEECSSS----------SEEEEEETTSEEEEEEECC-----C----CCCCCEEEEEEEECCCCEEEGGGTEEE
T ss_pred ccCcEEEEEECCCC----------CEEEEEcCCCeEEEEEecCCCCCCc----ccccceeEecccccccccccccccccc
Confidence 34689999999763 2455556689999999985431000 0111245677888998
Q ss_pred -CcEEEEEEeecCCCC--CEEEEEECCCcEEEEEccCCcee---------------------------------------
Q 003423 133 -HWVFDVCFLKVCNGN--RSLAIGCSDNSIRVWDISNSSII--------------------------------------- 170 (821)
Q Consensus 133 -~~I~~~~~~~~~~~~--~~l~t~~~d~~i~iwd~~~~~~~--------------------------------------- 170 (821)
+.|++++|+| ++ ..|++++.|+.|++||+.++...
T Consensus 93 ~~~V~~l~~~~---~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (447)
T 3dw8_B 93 EEKINKIRWLP---QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPR 169 (447)
T ss_dssp CCCCCEEEECC---CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEE
T ss_pred cCceEEEEEcC---CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccce
Confidence 8899999999 77 78999999999999999864432
Q ss_pred EEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEE
Q 003423 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (821)
Q Consensus 171 ~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (821)
..+...+...+.++++ ++++.+|++| .||.|++||+.. ....+.
T Consensus 170 ~~~~~~h~~~v~~~~~---~~~~~~l~s~-~d~~i~iwd~~~--------------------------------~~~~~~ 213 (447)
T 3dw8_B 170 RIFANAHTYHINSISI---NSDYETYLSA-DDLRINLWHLEI--------------------------------TDRSFN 213 (447)
T ss_dssp EEECSCCSSCCCEEEE---CTTSSEEEEE-CSSEEEEEETTE--------------------------------EEEEEE
T ss_pred EEeccCCCcceEEEEE---cCCCCEEEEe-CCCeEEEEECCC--------------------------------CCceee
Confidence 1222233445667776 5788999999 799999999981 122222
Q ss_pred -------EEecCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccce------------e
Q 003423 251 -------RLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA------------R 310 (821)
Q Consensus 251 -------~~~~h~~~I~~l~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~------------~ 310 (821)
.+.+|...|.+++|+|++ ++|++++.||+|++||++++... ...+ ..+.+|.. .
T Consensus 214 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~ 287 (447)
T 3dw8_B 214 IVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC----DRHS--KLFEEPEDPSNRSFFSEIISS 287 (447)
T ss_dssp EEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS----CTTC--EEECCC-----CCHHHHHTTC
T ss_pred eeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc----ccee--eEeccCCCccccccccccCce
Confidence 256899999999999998 99999999999999999886530 0001 35666665 8
Q ss_pred EEEEEEc--CCEEEEEeCCCeEEEEcC-C-CceeeEeecccCC--------------CeEEEEEecCCCEEEEEeCCCcE
Q 003423 311 VWDCCLT--DSFIITAGEDCTCRVWGS-D-GKQLKMIKEHIGR--------------GIWRCLYDSLSSLLVTAGFDSAI 372 (821)
Q Consensus 311 i~~v~~~--~~~l~s~~~dg~i~iwd~-~-~~~~~~~~~h~~~--------------~i~~l~~~~~~~~l~tg~~dg~I 372 (821)
|.+++|+ +.+|++++. +.|++||+ . ++++..+.+|... .+..++|+|++++|++|+.||.|
T Consensus 288 v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v 366 (447)
T 3dw8_B 288 ISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFF 366 (447)
T ss_dssp EEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEE
T ss_pred EEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEE
Confidence 9999999 478999988 99999999 3 7888888888631 02348999999999999999999
Q ss_pred EEEEcCCcCCCcccCCccccc---cCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEE
Q 003423 373 KVHQFQAFLPGSLESHPEAKE---FNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHT 445 (821)
Q Consensus 373 ~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~ 445 (821)
++||+.+.....++.+..... ......+.....................|..++|+|++.+++++..+.++.+
T Consensus 367 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~ 442 (447)
T 3dw8_B 367 RMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIF 442 (447)
T ss_dssp EEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEE
T ss_pred EEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecceeeee
Confidence 999997644333333221100 0000000000000000000011123456899999999999988877777644
No 103
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=9.9e-27 Score=245.94 Aligned_cols=224 Identities=16% Similarity=0.154 Sum_probs=172.7
Q ss_pred eeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc----eeEEEccCcceeEEEEeeccCCccCeEEEEEee
Q 003423 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS----IILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (821)
Q Consensus 126 ~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (821)
..+.+|.+.|++++|+| ++++||+|+.||.|++||+.++. ....+..+.. .+.+++|.+. .++.+|++|+.
T Consensus 5 ~~~~gH~~~v~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~-~d~~~l~s~~~ 79 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDF---YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDS-SIVAIDWASP-EYGRIIASASY 79 (351)
T ss_dssp CEECCCSSCEEEEEECS---SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSS-CEEEEEECCG-GGCSEEEEEET
T ss_pred ccCcccccceeEEEEcC---CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCC-cEEEEEEcCC-CCCCEEEEEcC
Confidence 45679999999999999 99999999999999999998763 4445555443 4677777321 15889999999
Q ss_pred CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCC--CCEEEEEeCCCe
Q 003423 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC--GSKLVSVSDDRS 279 (821)
Q Consensus 202 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~--~~~l~s~s~Dg~ 279 (821)
||.|++||+....... .......+..+.+|.+.|.+++|+|+ +++|++++.|+.
T Consensus 80 dg~v~vwd~~~~~~~~------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 135 (351)
T 3f3f_A 80 DKTVKLWEEDPDQEEC------------------------SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGI 135 (351)
T ss_dssp TSCEEEEEECTTSCTT------------------------SSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCE
T ss_pred CCeEEEEecCCCcccc------------------------cccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCc
Confidence 9999999998221100 00123567788899999999999999 999999999999
Q ss_pred EEEEecccCcccCCCCcee-ee--ceEEeccceeEEEEEEc-----CCEEEEEeCCCeEEEEcC-CCc--eeeEeecccC
Q 003423 280 ARIWEVRAEYWKDSDSIEE-VG--SSVLYGHNARVWDCCLT-----DSFIITAGEDCTCRVWGS-DGK--QLKMIKEHIG 348 (821)
Q Consensus 280 i~iwd~~~~~~~~~~~~~~-~~--~~~~~~h~~~i~~v~~~-----~~~l~s~~~dg~i~iwd~-~~~--~~~~~~~h~~ 348 (821)
|++||+++++......... .. .....+|...+.+++|+ +..+++++.|+.+.+|+. .++ .+..+.+|..
T Consensus 136 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 215 (351)
T 3f3f_A 136 LRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKS 215 (351)
T ss_dssp EEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCS
T ss_pred EEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCc
Confidence 9999998876511110000 00 01223678889999997 579999999999988887 343 3667778887
Q ss_pred CCeEEEEEecCC----CEEEEEeCCCcEEEEEcCC
Q 003423 349 RGIWRCLYDSLS----SLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 349 ~~i~~l~~~~~~----~~l~tg~~dg~I~iwd~~~ 379 (821)
.|++++|+|++ ++|++|+.||.|++||++.
T Consensus 216 -~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 216 -LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE 249 (351)
T ss_dssp -CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred -ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence 69999999998 8999999999999999853
No 104
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.7e-26 Score=247.50 Aligned_cols=256 Identities=17% Similarity=0.267 Sum_probs=201.9
Q ss_pred CeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCC
Q 003423 54 GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH 133 (821)
Q Consensus 54 ~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 133 (821)
|+++..++.|.. .|.+++|+|++ ..++++..|+.|++|++.... .+....+.+|.+
T Consensus 1 G~~~~~~~~h~~-~v~~~~~s~~~----------~~l~~~~~dg~i~iw~~~~~~-------------~~~~~~~~~h~~ 56 (379)
T 3jrp_A 1 GSMVVIANAHNE-LIHDAVLDYYG----------KRLATCSSDKTIKIFEVEGET-------------HKLIDTLTGHEG 56 (379)
T ss_dssp ----CCEEECCC-CEEEEEECSSS----------SEEEEEETTSCEEEEEEETTE-------------EEEEEEECCCSS
T ss_pred CCccEEecCCcc-cEEEEEEcCCC----------CEEEEEECCCcEEEEecCCCc-------------ceeeeEecCCCC
Confidence 456677777665 79999999763 245555568999999997432 466788899999
Q ss_pred cEEEEEEeecCCC--CCEEEEEECCCcEEEEEccCCc--eeEEEccCcceeEEEEeeccCCcc--CeEEEEEeeCCEEEE
Q 003423 134 WVFDVCFLKVCNG--NRSLAIGCSDNSIRVWDISNSS--IILEVHSPERCLLYSMKLWGDNLE--ALRIASGTIYNEIIV 207 (821)
Q Consensus 134 ~I~~~~~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~s~~~~~~s~~--~~~l~sg~~dg~i~v 207 (821)
.|++++|+| + +++|++|+.||.|++||+.+++ .+..+..+. ..+.++++ +++ +.++++++.||.|++
T Consensus 57 ~v~~~~~~~---~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~v~~~~~---~~~~~~~~l~~~~~d~~i~v 129 (379)
T 3jrp_A 57 PVWRVDWAH---PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS-ASVNSVQW---APHEYGPLLLVASSDGKVSV 129 (379)
T ss_dssp CEEEEEECC---GGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS-SCEEEEEE---CCGGGCSEEEEEETTSEEEE
T ss_pred cEEEEEeCC---CCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCC-cceEEEEe---CCCCCCCEEEEecCCCcEEE
Confidence 999999997 6 8999999999999999999987 455555443 34677777 466 889999999999999
Q ss_pred EEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcC-------------CCCEEEEE
Q 003423 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-------------CGSKLVSV 274 (821)
Q Consensus 208 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~-------------~~~~l~s~ 274 (821)
||+... .......+.+|...|.+++|+| ++++|+++
T Consensus 130 ~d~~~~-------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (379)
T 3jrp_A 130 VEFKEN-------------------------------GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 178 (379)
T ss_dssp EECCTT-------------------------------SCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEE
T ss_pred EecCCC-------------------------------CceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEE
Confidence 999811 1233446678999999999999 68999999
Q ss_pred eCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC-----CEEEEEeCCCeEEEEcCC-Cc---eeeE--e
Q 003423 275 SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-----SFIITAGEDCTCRVWGSD-GK---QLKM--I 343 (821)
Q Consensus 275 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~-----~~l~s~~~dg~i~iwd~~-~~---~~~~--~ 343 (821)
+.|+.|++||++.+.. .... ...+.+|...|.+++|++ .+|++++.||.|++||+. +. .... .
T Consensus 179 ~~dg~i~i~d~~~~~~-----~~~~-~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 252 (379)
T 3jrp_A 179 GADNLVKIWKYNSDAQ-----TYVL-ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKE 252 (379)
T ss_dssp ETTSCEEEEEEETTTT-----EEEE-EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSS
T ss_pred eCCCeEEEEEecCCCc-----ceee-EEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeecc
Confidence 9999999999987653 2111 147788999999999984 589999999999999994 32 1222 2
Q ss_pred ecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 344 KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 344 ~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
..|.. .|++++|+|++++|++++.||.|++|+++
T Consensus 253 ~~~~~-~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 253 EKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp SCCSS-CEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred ccCCC-cEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 23666 69999999999999999999999999985
No 105
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.4e-26 Score=252.20 Aligned_cols=294 Identities=11% Similarity=0.116 Sum_probs=202.7
Q ss_pred eeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCe---eeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEE
Q 003423 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT---LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (821)
Q Consensus 17 ~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~---~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~ 93 (821)
..|+++++|+ || +++|+++.++.|++||+.+|+ .+..+..... ......+.... .+ ...+..
T Consensus 4 ~~p~~~v~~s--~d----g~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~----~~----~~~~~~ 68 (450)
T 2vdu_B 4 IHPLQNLLTS--RD----GSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFD-KIQESRNTTAK----EQ----QGQSSE 68 (450)
T ss_dssp ECCCCEEEEC--SS----SSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-----------------------------
T ss_pred cccEEEEEec--CC----CCEEEEEeCCeEEEEECCCCCcceeeeecCCccc-cccccccccch----hh----cccccc
Confidence 4689999999 98 668888889999999999999 6665553221 11222211000 00 001110
Q ss_pred EcC--CeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEE-EEEECCCcEEEEEcc--CCc
Q 003423 94 FGE--KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL-AIGCSDNSIRVWDIS--NSS 168 (821)
Q Consensus 94 ~g~--~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l-~t~~~d~~i~iwd~~--~~~ 168 (821)
... ...+.-.-.... .. ..-........++|.+.|++++|+| ++++| ++|+.||.|++||+. +++
T Consensus 69 ~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~v~~~~~s~---d~~~l~~~~~~dg~v~iwd~~~~~~~ 138 (450)
T 2vdu_B 69 NENENKKLKSNKGDSIK--RT-----AAKVPSPGLGAPPIYSYIRNLRLTS---DESRLIACADSDKSLLVFDVDKTSKN 138 (450)
T ss_dssp --------------------------------------CCCCCEEEEEECT---TSSEEEEEEGGGTEEEEEEECSSSSS
T ss_pred ccccccccccCcCcccc--cc-----CccccCCCCCCCccCCceEEEEEcC---CCCEEEEEECCCCeEEEEECcCCCCc
Confidence 000 000000000000 00 0000112334567889999999999 99986 889999999999999 888
Q ss_pred eeEEEccC-cceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccccccee
Q 003423 169 IILEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (821)
Q Consensus 169 ~~~~~~~~-~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (821)
.+..+..+ ....+.+++| ++++.+|++|+.+|.|++|++.... ...
T Consensus 139 ~~~~~~~~~~~~~v~~~~~---sp~~~~l~~~~~~g~v~~~~~~~~~------------------------------~~~ 185 (450)
T 2vdu_B 139 VLKLRKRFCFSKRPNAISI---AEDDTTVIIADKFGDVYSIDINSIP------------------------------EEK 185 (450)
T ss_dssp CEEEEEEEECSSCEEEEEE---CTTSSEEEEEETTSEEEEEETTSCC------------------------------CSS
T ss_pred eeeeeecccCCCCceEEEE---cCCCCEEEEEeCCCcEEEEecCCcc------------------------------ccc
Confidence 87777532 2334667776 6889999999999999999987211 111
Q ss_pred -eEEEEecCCCcEEEEEEcCC---CCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc-CCEEE
Q 003423 248 -NLFRLVGHEGSIFRIEWSSC---GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFII 322 (821)
Q Consensus 248 -~~~~~~~h~~~I~~l~~s~~---~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~l~ 322 (821)
....+.+|.+.|.+++|+|+ +++|++++.|++|++||+.++.. .. ..+.+|...|++++|+ +.+|+
T Consensus 186 ~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~-----~~----~~~~~h~~~v~~~~~sd~~~l~ 256 (450)
T 2vdu_B 186 FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI-----VD----KWLFGHKHFVSSICCGKDYLLL 256 (450)
T ss_dssp CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC-----EE----EECCCCSSCEEEEEECSTTEEE
T ss_pred ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce-----ee----eeecCCCCceEEEEECCCCEEE
Confidence 23356789999999999999 99999999999999999988755 21 1356899999999997 78999
Q ss_pred EEeCCCeEEEEcC-CCceeeEeeccc------------------------CCCeEEEEEecCCCEEEEEe-CCCcEEEEE
Q 003423 323 TAGEDCTCRVWGS-DGKQLKMIKEHI------------------------GRGIWRCLYDSLSSLLVTAG-FDSAIKVHQ 376 (821)
Q Consensus 323 s~~~dg~i~iwd~-~~~~~~~~~~h~------------------------~~~i~~l~~~~~~~~l~tg~-~dg~I~iwd 376 (821)
+++.|++|++||+ +++++..+..+. ...|.+++++|++++|++++ .|+.|++|+
T Consensus 257 s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~ 336 (450)
T 2vdu_B 257 SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE 336 (450)
T ss_dssp EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 9999999999999 677777776321 12589999999999999999 899999999
Q ss_pred c
Q 003423 377 F 377 (821)
Q Consensus 377 ~ 377 (821)
+
T Consensus 337 ~ 337 (450)
T 2vdu_B 337 M 337 (450)
T ss_dssp E
T ss_pred e
Confidence 9
No 106
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.9e-28 Score=261.59 Aligned_cols=319 Identities=11% Similarity=0.022 Sum_probs=225.3
Q ss_pred cCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEE
Q 003423 129 PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVW 208 (821)
Q Consensus 129 ~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vw 208 (821)
+...+||.+++|+| ||+++|||+.|++|+ |...++.+ .+| ...+++++| +|++ .++.+.+|
T Consensus 12 ~~~~~~v~sv~~Sp---DG~~iASas~D~TV~--d~~~~~~l---~gh-~~~v~~V~F---sPdg-------~~~~~~~~ 72 (588)
T 2j04_A 12 KEFEDWKNNLTWAR---DGTLYLTTFPDISIG--QPKYAKDI---NCN-SKNLFHVKE---FPLE-------FENKLDFE 72 (588)
T ss_dssp CCCSSSSCCEEECT---TSCEEEECSSSEEEE--EECCCSCC---SSB-GGGTEEEEE---ECCC-------CCCTTTTS
T ss_pred hHhhccEEEEEECC---CCCEEEEEcCCceee--ccccccee---cCC-CccEEEEEE---CCCC-------CcceEEEE
Confidence 45568999999999 999999999999999 76666544 443 345778887 4555 44555555
Q ss_pred EcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccC
Q 003423 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (821)
Q Consensus 209 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~ 288 (821)
+.+ .. ....+ +|...|.+++|+|+|++||+++.||+|++||...
T Consensus 73 ~~~---------------------------------~~-~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~- 116 (588)
T 2j04_A 73 LAQ---------------------------------QN-GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK- 116 (588)
T ss_dssp CCC---------------------------------SS-CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-
T ss_pred eCC---------------------------------Cc-eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-
Confidence 433 11 11111 5688999999999999999999999999999544
Q ss_pred cccCCCCceeeeceEEeccce-----eEEEEEEc--CCEEEEEeCCCeEEEEcCCCc--------eeeEe----ecccCC
Q 003423 289 YWKDSDSIEEVGSSVLYGHNA-----RVWDCCLT--DSFIITAGEDCTCRVWGSDGK--------QLKMI----KEHIGR 349 (821)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~h~~-----~i~~v~~~--~~~l~s~~~dg~i~iwd~~~~--------~~~~~----~~h~~~ 349 (821)
. . ..+. |.. .|.+++|+ +++|++|+.||+|++||+.++ .+.++ .+|..
T Consensus 117 -~-----l-----~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~- 183 (588)
T 2j04_A 117 -M-----L-----TNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKD- 183 (588)
T ss_dssp -E-----E-----EECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC-
T ss_pred -e-----e-----eecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccc-
Confidence 2 1 3444 554 49999999 589999999999999999443 25666 55666
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceecc-CCCCcceEEEEee
Q 003423 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLT-DSKSEYVRCLHLT 428 (821)
Q Consensus 350 ~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~f~ 428 (821)
.|.+++|+|+| +++++.|+.|++|++.+....+ ....+ ..|...|.+++|+
T Consensus 184 ~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~--------------------------~~~tL~~~h~~~V~svaFs 235 (588)
T 2j04_A 184 WVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQP--------------------------VSRMIQNASRRKITDLKIV 235 (588)
T ss_dssp CEEEEEEETTE--EEEEETTCCEEEECCCSSSSCC--------------------------CEEEEECCCSSCCCCEEEE
T ss_pred cEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccc--------------------------ceeeecccccCcEEEEEEE
Confidence 69999999999 8899999999999996542211 00011 1344669999999
Q ss_pred cCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCC
Q 003423 429 SEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP 508 (821)
Q Consensus 429 ~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~ 508 (821)
+..++++.++.+. +|+....... .....+...+..+.+.. ++++..++++..+|+ ++|..+.
T Consensus 236 --g~~LASa~~~tIk---LWd~~~~~~~-~~~~gh~~~V~~va~~~------s~d~~~La~a~edG~-klw~~d~----- 297 (588)
T 2j04_A 236 --DYKVVLTCPGYVH---KIDLKNYSIS-SLKTGSLENFHIIPLNH------EKESTILLMSNKTSY-KVLLEDE----- 297 (588)
T ss_dssp --TTEEEEECSSEEE---EEETTTTEEE-EEECSCCSCCCEEEETT------CSSCEEEEECSSCEE-EEEESSS-----
T ss_pred --CCEEEEEeCCeEE---EEECCCCeEE-EEEcCCCceEEEEEeee------CCCCCEEEEEcCCCC-EEEeecc-----
Confidence 4666666666665 6665544422 22323566777777611 145689999999999 9999651
Q ss_pred cceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEe
Q 003423 509 QLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDA 588 (821)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~ 588 (821)
+. ++|++..+++. |+++++|+...... ..+ .+...|.+++|
T Consensus 298 -----~~---------------~spd~~l~a~~--d~~v~lW~~~g~~l---------------~~~--~~~~~I~~va~ 338 (588)
T 2j04_A 298 -----LH---------------VTADNIIAPYL--EKKFKKWSTIWNEF---------------NNY--ETTLVIHGISL 338 (588)
T ss_dssp -----EE---------------EECCCSSHHHH--HHHHHHTTTTTTSS---------------SSS--CCEEEEEEEEE
T ss_pred -----EE---------------ECCCceEEEEc--CCEEEEEECCCCce---------------eee--ccceEEEEEEE
Confidence 11 33555666554 99999998754421 011 12456999999
Q ss_pred ecCCCEEEEEcC
Q 003423 589 SFEDEVLFCGDL 600 (821)
Q Consensus 589 s~~~~~L~sgs~ 600 (821)
||||+.+|+++.
T Consensus 339 SPdG~~lA~~~~ 350 (588)
T 2j04_A 339 SPDGYSIAIVYD 350 (588)
T ss_dssp CTTSSEEEEEEE
T ss_pred CCCCCEEEEEEe
Confidence 999999999875
No 107
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.95 E-value=2.2e-24 Score=261.43 Aligned_cols=445 Identities=8% Similarity=-0.040 Sum_probs=285.0
Q ss_pred CCCcceeeccceeeeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCC
Q 003423 4 KDLSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSV 83 (821)
Q Consensus 4 ~~i~~w~~~~~~~~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 83 (821)
+++++|......+.+.+...+|| |+ .|+....+.|.+|++.+++. ..+..+. ..+.+++|+|++
T Consensus 1 ~~~kl~~~~g~~~~~~~~~~~~S--~~------~iaf~~~~~l~~~~~~gg~~-~~lt~~~-~~v~~~~~SPDG------ 64 (1045)
T 1k32_A 1 KTFKLHEMHGLCMPNLLLNPDIH--GD------RIIFVCCDDLWEHDLKSGST-RKIVSNL-GVINNARFFPDG------ 64 (1045)
T ss_dssp ------------CCCCCEEEEEE--TT------EEEEEETTEEEEEETTTCCE-EEEECSS-SEEEEEEECTTS------
T ss_pred CcccccccccccccceEeCcEEe--CC------EEEEEECCcEEEEECCCCcE-EEeeeCC-CcccCeEECCCC------
Confidence 35777876655567788999999 65 66666668999999988875 4455444 469999999764
Q ss_pred ccceeeEEEEEc------CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcE-------EEEEEeecCCCCCEE
Q 003423 84 STRVTFEVALFG------EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV-------FDVCFLKVCNGNRSL 150 (821)
Q Consensus 84 ~~~~~~~l~~~g------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I-------~~~~~~~~~~~~~~l 150 (821)
+ .++.+.. +..|.+|++..+ ....+..|...+ .+++|+| +|+++
T Consensus 65 -~---~la~~s~~~~~~~~~~i~~~d~~~g----------------~~~~lt~~~~~~~~~~~~~~~~~~Sp---Dg~ll 121 (1045)
T 1k32_A 65 -R---KIAIRVMRGSSLNTADLYFYNGENG----------------EIKRITYFSGKSTGRRMFTDVAGFDP---DGNLI 121 (1045)
T ss_dssp -S---EEEEEEEESTTCCEEEEEEEETTTT----------------EEEECCCCCEEEETTEECSEEEEECT---TCCEE
T ss_pred -C---EEEEEEeeccCCCCCeEEEEECCCC----------------CeEEcccCCCcccccccccccccCCC---CCEEE
Confidence 2 2333322 246777776532 256778888888 9999999 99977
Q ss_pred EEEECC------CcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeC------------CEEEEEEccc
Q 003423 151 AIGCSD------NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY------------NEIIVWKVDW 212 (821)
Q Consensus 151 ~t~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d------------g~i~vwd~~~ 212 (821)
++++.+ ..|.+||+.++....-...+... +.| ++ + ++++++.+ ....+|...
T Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~----~~~---sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~- 191 (1045)
T 1k32_A 122 ISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATH----ILF---AD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEV- 191 (1045)
T ss_dssp EEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSE----EEE---ET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEE-
T ss_pred EEECCcCCCcccceEEEEECCCCCeEEecCCCcce----eee---CC-C-EEEEeccCCCccccccccCCCcCCEEEEC-
Confidence 777644 35777888776543222222222 223 35 6 77777532 334555433
Q ss_pred CCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccC
Q 003423 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (821)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~ 292 (821)
.......+.+|.+.+.++.|+++ .++++++.|++++||.+.....
T Consensus 192 --------------------------------~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~-- 236 (1045)
T 1k32_A 192 --------------------------------NSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK-- 236 (1045)
T ss_dssp --------------------------------ETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC--
T ss_pred --------------------------------CCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC--
Confidence 11234445799999999999998 6777888899999998764221
Q ss_pred CCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcCCCceeeEeecc-----------cCCCeEEEEEe-c
Q 003423 293 SDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEH-----------IGRGIWRCLYD-S 358 (821)
Q Consensus 293 ~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~h-----------~~~~i~~l~~~-~ 358 (821)
.. ..+..|. .+...+|+ +..++.+ .++.|.+|++..+.+..+..+ .. .+.+++|+ |
T Consensus 237 --~~-----~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~-~v~~~~~S~p 306 (1045)
T 1k32_A 237 --DL-----RKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIP-SKFAEDFSPL 306 (1045)
T ss_dssp --SC-----EECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECG-GGGEEEEEEC
T ss_pred --cc-----eEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceEeeeeccCccccccccccccc-ccceeeecCC
Confidence 01 2344444 34555776 5667766 599999999965555555442 22 48899999 9
Q ss_pred CCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCc-ceEEEEeecCCeEEEEe
Q 003423 359 LSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSE-YVRCLHLTSEDTLYIAT 437 (821)
Q Consensus 359 ~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~f~~~~~~l~~~ 437 (821)
+|+.|++++ ++.|.+|+........ +..+.. .+..++|+ ++..++..
T Consensus 307 dG~~la~~~-~~~i~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~s-dg~~l~~~ 354 (1045)
T 1k32_A 307 DGDLIAFVS-RGQAFIQDVSGTYVLK------------------------------VPEPLRIRYVRRGGD-TKVAFIHG 354 (1045)
T ss_dssp GGGCEEEEE-TTEEEEECTTSSBEEE------------------------------CSCCSCEEEEEECSS-SEEEEEEE
T ss_pred CCCEEEEEE-cCEEEEEcCCCCceEE------------------------------ccCCCcceEEeeeEc-CCCeEEEE
Confidence 999999888 7889999885421111 112233 58899999 88776665
Q ss_pred cCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeec
Q 003423 438 NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWS 517 (821)
Q Consensus 438 ~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~ 517 (821)
++ ....+.+++........+. .+...+..+.+.+ +++++++++.++.+++|++.++... .....+
T Consensus 355 s~-~~~l~~~~d~~~~~~~~l~--~~~~~~~~~~~Sp--------DG~~la~~~~~~~v~~~d~~tg~~~----~~~~~~ 419 (1045)
T 1k32_A 355 TR-EGDFLGIYDYRTGKAEKFE--ENLGNVFAMGVDR--------NGKFAVVANDRFEIMTVDLETGKPT----VIERSR 419 (1045)
T ss_dssp ET-TEEEEEEEETTTCCEEECC--CCCCSEEEEEECT--------TSSEEEEEETTSEEEEEETTTCCEE----EEEECS
T ss_pred EC-CCceEEEEECCCCCceEec--CCccceeeeEECC--------CCCEEEEECCCCeEEEEECCCCceE----EeccCC
Confidence 54 2222224444433323333 3345566666644 5699999999999999998765431 111111
Q ss_pred cCccceeeeeEEeecCCCeEEEEECCC----------CcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEE
Q 003423 518 AGIERQLLGTYWCKSLGHRFIFTADPK----------GRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLD 587 (821)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~ 587 (821)
...+. ...++|++++|++++.+ +.|++||+..+ + ...+ ..|...+.+++
T Consensus 420 ---~~~v~--~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g--------------~-~~~l-~~~~~~~~~~~ 478 (1045)
T 1k32_A 420 ---EAMIT--DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR--------------K-IFAA-TTENSHDYAPA 478 (1045)
T ss_dssp ---SSCCC--CEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT--------------E-EEEC-SCSSSBEEEEE
T ss_pred ---CCCcc--ceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC--------------c-EEEe-eCCCcccCCce
Confidence 11111 23578999998877654 38999998765 2 2222 45677789999
Q ss_pred eecCCCEEEEEcCCCcEEEEecC
Q 003423 588 ASFEDEVLFCGDLRGNLVLFPLL 610 (821)
Q Consensus 588 ~s~~~~~L~sgs~dG~i~iw~~~ 610 (821)
|+|||++|+.++.++...+|+..
T Consensus 479 ~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 479 FDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp ECTTSCEEEEEESCCCCCEECSS
T ss_pred EcCCCCEEEEEecccCCcCcchh
Confidence 99999999999998888888754
No 108
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=2.4e-26 Score=243.16 Aligned_cols=285 Identities=13% Similarity=0.100 Sum_probs=197.8
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeE-EEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE-VALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~-l~~~ 94 (821)
|..+|++++|+ || +.+|++|.+..++|||+++++.+..... . .+..+.+.+.. ..+ ++..
T Consensus 18 h~~~V~~v~fs--~d----g~~la~g~~~~~~iw~~~~~~~~~~~~~-~--~~~~~~~~~~~----------~~~~~~~~ 78 (355)
T 3vu4_A 18 VSNPVTDYEFN--QD----QSCLILSTLKSFEIYNVHPVAHIMSQEM-R--HLSKVRMLHRT----------NYVAFVTG 78 (355)
T ss_dssp -CCCCCEEEEC--TT----SSEEEEECSSEEEEEEETTEEEEEEEEC-S--CCCEEEECTTS----------SEEEEECS
T ss_pred CCCceEEEEEC--CC----CCEEEEEcCCEEEEEecCCcceeeeeec-C--CeEEEEEcCCC----------CEEEEEEC
Confidence 77899999999 99 7899999877799999998877655432 2 24455555331 123 3334
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCC-ceeEEE
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-SIILEV 173 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~-~~~~~~ 173 (821)
+++.|++||+..+ +.+..+. |...|.+++|++ +. ++++. |+.|++||+.++ +.+..+
T Consensus 79 ~d~~v~iWd~~~~---------------~~~~~~~-~~~~v~~v~~~~---~~--~~~~~-~~~i~i~d~~~~~~~~~~~ 136 (355)
T 3vu4_A 79 VKEVVHIWDDVKK---------------QDVSRIK-VDAPVKDLFLSR---EF--IVVSY-GDVISVFKFGNPWKRITDD 136 (355)
T ss_dssp STTEEEEEETTTT---------------EEEEEEE-CSSCEEEEEECS---SE--EEEEE-TTEEEEEESSTTCCBSSCC
T ss_pred CccEEEEEECCCC---------------cEEEEEE-CCCceEEEEEcC---CE--EEEEE-cCEEEEEECCCCceeeEEe
Confidence 5689999998743 3445554 667899999987 43 44443 789999999988 665554
Q ss_pred ccCcceeEEEEeeccCCccCeEEEE--EeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceee-EE
Q 003423 174 HSPERCLLYSMKLWGDNLEALRIAS--GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN-LF 250 (821)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~s--g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 250 (821)
..+.. + +++ ++ .+++. |+.+|.|++||+.........+... ......+ +.
T Consensus 137 ~~~~~--~--~~~---s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~------------------~~~~~~p~~~ 189 (355)
T 3vu4_A 137 IRFGG--V--CEF---SN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGV------------------QQKAILGKGV 189 (355)
T ss_dssp EEEEE--E--EEE---ET--TEEEEEESSCTTCEEEEECCC------------------------------------CCE
T ss_pred ccCCc--e--EEE---Ec--cEEEEeCCCcCcEEEEEECCCCCccccccccc------------------cccccCcccE
Confidence 44111 1 222 12 34444 7899999999998321000000000 0001123 67
Q ss_pred EEecCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEecccCcccCCCCceeeeceEEe-c-cceeEEEEEEc--CCEEEEEe
Q 003423 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRS-ARIWEVRAEYWKDSDSIEEVGSSVLY-G-HNARVWDCCLT--DSFIITAG 325 (821)
Q Consensus 251 ~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~-~-h~~~i~~v~~~--~~~l~s~~ 325 (821)
.+.+|.+.|.+++|+|++++|+||+.|++ |++||+.+++. . ..+. + |...|++++|+ +.+|++++
T Consensus 190 ~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~-----~-----~~~~~g~h~~~v~~~~~s~~~~~l~s~s 259 (355)
T 3vu4_A 190 LIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL-----V-----REFRRGLDRADVVDMKWSTDGSKLAVVS 259 (355)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE-----E-----EEEECTTCCSCEEEEEECTTSCEEEEEE
T ss_pred EEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE-----E-----EEEEcCCCCCcEEEEEECCCCCEEEEEE
Confidence 78999999999999999999999999998 99999998765 3 3555 5 99999999999 58999999
Q ss_pred CCCeEEEEcCC-Cc--eeeEeec--------------------ccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 326 EDCTCRVWGSD-GK--QLKMIKE--------------------HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 326 ~dg~i~iwd~~-~~--~~~~~~~--------------------h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
.|++|++||+. +. ....+.. ........++|+++++.|++++.||.+++|++.
T Consensus 260 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 260 DKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp TTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred CCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence 99999999983 21 1111110 011123678999999999999999999999984
No 109
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.2e-25 Score=240.83 Aligned_cols=257 Identities=12% Similarity=0.154 Sum_probs=201.1
Q ss_pred eeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEcc--CCceeEEEccCcceeEEEEeeccCCccCeEEEEEee
Q 003423 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS--NSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (821)
Q Consensus 124 ~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (821)
+...+.+|.+.|++++|+| ++++||+|+.||.|++||+. +++.+..+..|.. .+.+++|.+. .++.+|++|+.
T Consensus 3 ~~~~~~~h~~~v~~~~~s~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~~~~-~~~~~l~s~~~ 77 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDY---YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWAHP-KFGTILASCSY 77 (379)
T ss_dssp --CCEEECCCCEEEEEECS---SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECCG-GGCSEEEEEET
T ss_pred ccEEecCCcccEEEEEEcC---CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCC-cEEEEEeCCC-CCCCEEEEecc
Confidence 4567889999999999999 99999999999999999998 4455666766654 4667776321 23899999999
Q ss_pred CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCC--CCEEEEEeCCCe
Q 003423 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC--GSKLVSVSDDRS 279 (821)
Q Consensus 202 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~--~~~l~s~s~Dg~ 279 (821)
||.|++||+... ....+..+.+|...|.+++|+|+ +++|++++.|+.
T Consensus 78 dg~v~iwd~~~~-------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~ 126 (379)
T 3jrp_A 78 DGKVLIWKEENG-------------------------------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 126 (379)
T ss_dssp TSCEEEEEEETT-------------------------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred CCEEEEEEcCCC-------------------------------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCc
Confidence 999999999811 22367778899999999999999 999999999999
Q ss_pred EEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC---------------CEEEEEeCCCeEEEEcC-CCc----e
Q 003423 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---------------SFIITAGEDCTCRVWGS-DGK----Q 339 (821)
Q Consensus 280 i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~---------------~~l~s~~~dg~i~iwd~-~~~----~ 339 (821)
|++||+..... ... ..+.+|...|.+++|++ .++++++.|+.|++||+ .++ .
T Consensus 127 i~v~d~~~~~~-----~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 198 (379)
T 3jrp_A 127 VSVVEFKENGT-----TSP---IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 198 (379)
T ss_dssp EEEEECCTTSC-----CCE---EEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEE
T ss_pred EEEEecCCCCc-----eee---EEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceee
Confidence 99999988643 211 46778999999999975 68999999999999998 332 4
Q ss_pred eeEeecccCCCeEEEEEecC---CCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccC
Q 003423 340 LKMIKEHIGRGIWRCLYDSL---SSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTD 416 (821)
Q Consensus 340 ~~~~~~h~~~~i~~l~~~~~---~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (821)
...+.+|.. .|.+++|+|+ +++|++++.||.|++||+...... .........
T Consensus 199 ~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~------------------------~~~~~~~~~ 253 (379)
T 3jrp_A 199 ESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP------------------------WKKTLLKEE 253 (379)
T ss_dssp EEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC------------------------CEEEESSSS
T ss_pred EEEEecccC-cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc------------------------ceeeeeccc
Confidence 567778888 6999999999 899999999999999999642100 000011122
Q ss_pred CCCcceEEEEeecCCeEEE-EecCCcEEEEEecC
Q 003423 417 SKSEYVRCLHLTSEDTLYI-ATNHGYLYHTKLCD 449 (821)
Q Consensus 417 ~~~~~i~~l~f~~~~~~l~-~~~~g~~~~~~i~~ 449 (821)
.+...+.+++|+|++.+++ ++.+|.+..+++..
T Consensus 254 ~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 254 KFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp CCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred cCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 3456799999999997665 45778887665543
No 110
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.95 E-value=1.5e-26 Score=250.00 Aligned_cols=286 Identities=13% Similarity=0.084 Sum_probs=217.0
Q ss_pred eEEEEEeccCCCCCCcceEEe-ecCCeEEEEECCCC-e---eeeEEEeeccccEEeEEecc-ccCCCCCCccceeeEEEE
Q 003423 20 ISALCFVHLPSHLSSLPFLLA-GSGSQVLLYDLEAG-T---LIRPFQVFHGIRLHGISCNF-INCTEGSVSTRVTFEVAL 93 (821)
Q Consensus 20 Vt~l~~~~~p~~~~~~~~l~~-g~~~~i~iwd~~t~-~---~~~~~~~~~~~~i~~i~~~~-~~~~~~~~~~~~~~~l~~ 93 (821)
...++++ |+ ...++++ +.+|.|+|||+.+. + .+..+..|.. .|.+++|+| +. ..++++
T Consensus 37 ~~~~~~~--~~---~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~-~V~~~~~~p~~~----------~~l~s~ 100 (402)
T 2aq5_A 37 SGFCAVN--PK---FMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTA-PVLDIAWCPHND----------NVIASG 100 (402)
T ss_dssp SCSEEEC--SS---EEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSS-CEEEEEECTTCT----------TEEEEE
T ss_pred CCcEEEC--CC---eEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCC-CEEEEEeCCCCC----------CEEEEE
Confidence 4567888 77 2233443 44899999999654 2 2334444444 799999997 32 245555
Q ss_pred EcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCC-CEEEEEECCCcEEEEEccCCceeEE
Q 003423 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSIILE 172 (821)
Q Consensus 94 ~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~-~~l~t~~~d~~i~iwd~~~~~~~~~ 172 (821)
..|+.|++|++........ ..+.+..+.+|.+.|.+++|+| ++ ++|++|+.|+.|++||+.+++.+..
T Consensus 101 s~dg~v~vw~~~~~~~~~~--------~~~~~~~~~~h~~~v~~~~~~p---~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 169 (402)
T 2aq5_A 101 SEDCTVMVWEIPDGGLVLP--------LREPVITLEGHTKRVGIVAWHP---TAQNVLLSAGCDNVILVWDVGTGAAVLT 169 (402)
T ss_dssp ETTSEEEEEECCTTCCSSC--------BCSCSEEEECCSSCEEEEEECS---SBTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred eCCCeEEEEEccCCCCccc--------cCCceEEecCCCCeEEEEEECc---CCCCEEEEEcCCCEEEEEECCCCCccEE
Confidence 6689999999985431100 0145677889999999999999 87 6999999999999999999999888
Q ss_pred Ec-cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEE
Q 003423 173 VH-SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (821)
Q Consensus 173 ~~-~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (821)
+. ..+...+.++++ ++++.+|++++.||.|++||+. ....+..
T Consensus 170 ~~~~~~~~~v~~~~~---~~~~~~l~~~~~d~~i~iwd~~---------------------------------~~~~~~~ 213 (402)
T 2aq5_A 170 LGPDVHPDTIYSVDW---SRDGALICTSCRDKRVRVIEPR---------------------------------KGTVVAE 213 (402)
T ss_dssp ECTTTCCSCEEEEEE---CTTSSCEEEEETTSEEEEEETT---------------------------------TTEEEEE
T ss_pred EecCCCCCceEEEEE---CCCCCEEEEEecCCcEEEEeCC---------------------------------CCceeee
Confidence 83 333445777777 5789999999999999999998 5666777
Q ss_pred E-ecCCCc-EEEEEEcCCCCEEEEE---eCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEE-E
Q 003423 252 L-VGHEGS-IFRIEWSSCGSKLVSV---SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFII-T 323 (821)
Q Consensus 252 ~-~~h~~~-I~~l~~s~~~~~l~s~---s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~-s 323 (821)
+ .+|.+. +.+++|+|++++|+++ +.|+.|++||+.+... ... .....|...|.+++|+ +.+++ +
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~-----~~~---~~~~~~~~~v~~~~~s~~~~~l~~~ 285 (402)
T 2aq5_A 214 KDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE-----PLS---LQELDTSSGVLLPFFDPDTNIVYLC 285 (402)
T ss_dssp EECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS-----CSE---EEECCCCSSCEEEEEETTTTEEEEE
T ss_pred eccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC-----Cce---EEeccCCCceeEEEEcCCCCEEEEE
Confidence 7 689876 9999999999999999 7999999999988643 111 1334577889999998 45675 5
Q ss_pred EeCCCeEEEEcC-CCce-eeEeeccc--CCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 324 AGEDCTCRVWGS-DGKQ-LKMIKEHI--GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 324 ~~~dg~i~iwd~-~~~~-~~~~~~h~--~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
++.||.|++|++ .++. +..+..|. . .|.+++|+|++.++++ .++.+++|++..
T Consensus 286 g~~dg~i~i~d~~~~~~~~~~l~~~~~~~-~v~~~~~sp~~~~~~s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 286 GKGDSSIRYFEITSEAPFLHYLSMFSSKE-SQRGMGYMPKRGLEVN--KCEIARFYKLHE 342 (402)
T ss_dssp ETTCSCEEEEEECSSTTCEEEEEEECCSS-CCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred EcCCCeEEEEEecCCCcceEeecccccCC-cccceEEeccccccee--cceeEEEEEcCC
Confidence 558999999999 4442 55555543 5 6999999999988775 567999999954
No 111
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=5e-26 Score=227.86 Aligned_cols=277 Identities=12% Similarity=0.068 Sum_probs=186.9
Q ss_pred eEEeecCCeEEEEECCCC---eeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeE-EEEEEeecCCCCC
Q 003423 37 FLLAGSGSQVLLYDLEAG---TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRV-KLFELNFELSPNS 112 (821)
Q Consensus 37 ~l~~g~~~~i~iwd~~t~---~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v-~i~~~~~~~~~~~ 112 (821)
-++++....|++|+..++ +++++.+.++ .+|..+.+.|+-+ ..+.++-|.=.+ .++.+-..
T Consensus 56 ~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~---------~~~~~~~~~~~~~~v~sla~s----- 120 (356)
T 2w18_A 56 CIITACEDVVSLWKALDAWQWEKLYTWHFAE-VPVLQIVPVPDVY---------NLVCVALGNLEIREIRALFCS----- 120 (356)
T ss_dssp EEEEEESSEEEEEEESSSSBEEEEEEEECCS-SCEEEECCCTTCC---------SCEEEEECSSSEEEEEEECC------
T ss_pred EEEEeccceEEEcccCCCccceeeEEEeccC-ceeEEEEEcCccc---------ceeeeeeccccccceEEEEEC-----
Confidence 456666889999999999 8888888544 4899999997531 233444454222 22222211
Q ss_pred CCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEE--CCCcEEEEEcc-CCceeEEEccCcceeEEEEeeccC
Q 003423 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC--SDNSIRVWDIS-NSSIILEVHSPERCLLYSMKLWGD 189 (821)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~--~d~~i~iwd~~-~~~~~~~~~~~~~~~~~s~~~~~~ 189 (821)
|++.. +.....-.+|...|.++ + +++++.+++ .|+.|++|++. +++.+..+..+... +..++|.+-
T Consensus 121 ---pd~~~-~~~~l~s~g~~~~v~~l---~---~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~-v~~l~fs~~ 189 (356)
T 2w18_A 121 ---SDDES-EKQVLLKSGNIKAVLGL---T---KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPE-ETILTFAEV 189 (356)
T ss_dssp ---------CCEEEEEEEEEEEEEEE---T---TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCS-SCEEEEEEE
T ss_pred ---CCccc-cccEEEeCCCeEEEEec---C---CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCc-eeeEEeecc
Confidence 11000 11111113455445543 4 666666644 48999999994 47666654433321 112233221
Q ss_pred CccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCC---CcEEEEEEcC
Q 003423 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE---GSIFRIEWSS 266 (821)
Q Consensus 190 s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~I~~l~~s~ 266 (821)
+.++.+||+|+.|++|+|||+. +++.++++.+|. ..+.+++|+|
T Consensus 190 ~g~~~~LaSgS~D~TIkIWDl~---------------------------------TGk~l~tL~g~~~~v~~v~~vafSp 236 (356)
T 2w18_A 190 QGMQEALLGTTIMNNIVIWNLK---------------------------------TGQLLKKMHIDDSYQASVCHKAYSE 236 (356)
T ss_dssp ETSTTEEEEEETTSEEEEEETT---------------------------------TCCEEEEEECCC---CCCEEEEEEE
T ss_pred CCCCceEEEecCCCcEEEEECC---------------------------------CCcEEEEEcCCCcceeeeEEEEECC
Confidence 2378999999999999999999 778888888754 4678889999
Q ss_pred CCCEE------------EEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEc
Q 003423 267 CGSKL------------VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWG 334 (821)
Q Consensus 267 ~~~~l------------~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd 334 (821)
+|+++ +||+.|++|++||..+++. +.........+|...+.+..+++..+++++.|++|++||
T Consensus 237 dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~-----l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWD 311 (356)
T 2w18_A 237 MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS-----VGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWD 311 (356)
T ss_dssp TTEEEEEEC------------CCEEEEEEETTTTEE-----EEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE-----EEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEE
Confidence 99876 6788999999999988765 321100001377766767777788999999999999999
Q ss_pred C-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 335 S-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 335 ~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
+ +++++.++.+|....+.+++|+|+|++|++|+.|++|++||+
T Consensus 312 l~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 312 LLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9 899999999998743446899999999999999999999986
No 112
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.6e-26 Score=266.54 Aligned_cols=209 Identities=14% Similarity=0.206 Sum_probs=172.5
Q ss_pred eeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccC--CceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCC
Q 003423 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN--SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (821)
Q Consensus 126 ~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg 203 (821)
..+.+|.+.|++++|+| ++++|++|+.||.|++||+.+ +..+..+..|.. .+.++.|.+. .++.+|++|+.||
T Consensus 3 ~~l~gH~~~V~~l~~s~---dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~-~V~~l~~s~~-~~~~~l~s~s~Dg 77 (753)
T 3jro_A 3 VIANAHNELIHDAVLDY---YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWAHP-KFGTILASCSYDG 77 (753)
T ss_dssp -----CCCCEEEECCCS---SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSS-CEEEEEECCT-TSCSEEEEEETTS
T ss_pred eecccCcceeEEEEECC---CCCeEEEEECCCcEEEEecCCCCCccceeccCCcC-ceEEEEecCC-CCCCEEEEEeCCC
Confidence 45779999999999999 999999999999999999984 455666766644 4677777321 2388999999999
Q ss_pred EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCC--CCEEEEEeCCCeEE
Q 003423 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC--GSKLVSVSDDRSAR 281 (821)
Q Consensus 204 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~--~~~l~s~s~Dg~i~ 281 (821)
.|++||+.++ .......+.+|...|.+++|+|+ ++++++|+.||+|+
T Consensus 78 ~I~vwd~~~~-------------------------------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~ 126 (753)
T 3jro_A 78 KVLIWKEENG-------------------------------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126 (753)
T ss_dssp CEEEEEEETT-------------------------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred eEEEEECCCC-------------------------------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEE
Confidence 9999999811 22367778899999999999999 99999999999999
Q ss_pred EEecccCcccCCCCceeeeceEEeccceeEEEEEEcC---------------CEEEEEeCCCeEEEEcC-CC----ceee
Q 003423 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---------------SFIITAGEDCTCRVWGS-DG----KQLK 341 (821)
Q Consensus 282 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~---------------~~l~s~~~dg~i~iwd~-~~----~~~~ 341 (821)
+||+..... ... ....+|...|.+++|++ .++++++.||+|++||+ .+ ....
T Consensus 127 vwdl~~~~~-----~~~---~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 198 (753)
T 3jro_A 127 VVEFKENGT-----TSP---IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES 198 (753)
T ss_dssp EEECCSSSC-----CCC---EEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEE
T ss_pred EEEeecCCC-----cce---eEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeee
Confidence 999988643 111 46788999999999975 58999999999999998 33 4566
Q ss_pred EeecccCCCeEEEEEecC---CCEEEEEeCCCcEEEEEcCC
Q 003423 342 MIKEHIGRGIWRCLYDSL---SSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 342 ~~~~h~~~~i~~l~~~~~---~~~l~tg~~dg~I~iwd~~~ 379 (821)
.+.+|.+ .|++++|+|+ +++|++|+.||.|++||+..
T Consensus 199 ~~~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 199 TLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp EECCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred eecCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 7888888 6999999999 89999999999999999964
No 113
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=2e-25 Score=239.62 Aligned_cols=308 Identities=13% Similarity=0.119 Sum_probs=194.0
Q ss_pred CcceEEeecCCeEEEEECCCC-------eeeeEEE-eeccccEEeEEeccccCC-------------CCCCccceeeEEE
Q 003423 34 SLPFLLAGSGSQVLLYDLEAG-------TLIRPFQ-VFHGIRLHGISCNFINCT-------------EGSVSTRVTFEVA 92 (821)
Q Consensus 34 ~~~~l~~g~~~~i~iwd~~t~-------~~~~~~~-~~~~~~i~~i~~~~~~~~-------------~~~~~~~~~~~l~ 92 (821)
...++++|.++.|.+|+.... .....+. .....++..+.+++.... ..++ ...++.
T Consensus 30 ~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~las 106 (393)
T 4gq1_A 30 CSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVY---SLFLAC 106 (393)
T ss_dssp GTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEE---EEEEEE
T ss_pred CCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCC---CCEEEE
Confidence 456888899999999986421 1111111 223445666666543200 0011 012334
Q ss_pred EEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecC-----CCCCEEEEEECCCcEEEEEccCC
Q 003423 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC-----NGNRSLAIGCSDNSIRVWDISNS 167 (821)
Q Consensus 93 ~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~-----~~~~~l~t~~~d~~i~iwd~~~~ 167 (821)
+..|++|+||++..+. ......+..+.+|.++|++++|+|.. .++++||+|+.|++|+|||+.++
T Consensus 107 ~~~d~~v~lw~~~~~~----------~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~ 176 (393)
T 4gq1_A 107 VCQDNTVRLIITKNET----------IITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE 176 (393)
T ss_dssp EETTSCEEEEEEETTE----------EEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred EeCCCcEEEEECCCCc----------cceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence 4568999999998542 01123456789999999999999721 26789999999999999999988
Q ss_pred ceeEEEccCcceeEEEEeeccCCccC-eEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccce
Q 003423 168 SIILEVHSPERCLLYSMKLWGDNLEA-LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (821)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~s~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (821)
..+..+..+... +.+++|. |++ .+|++|+.||.|++||+.............. .... .++.... ...
T Consensus 177 ~~~~~~~~~~~~-v~~v~~~---p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~----~~~~--~~~s~~~--~~~ 244 (393)
T 4gq1_A 177 GPILAGYPLSSP-GISVQFR---PSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTEL----VKNP--WLLTLNT--LPL 244 (393)
T ss_dssp EEEEEEEECSSC-EEEEEEE---TTEEEEEEEEETTSEEEEEETTCCC--------------CSCC--CSEEEES--GGG
T ss_pred ceeeeecCCCCC-cEEEEEC---CCCCceEEecCCCCEEEEEECCCCcccccccccCC----cccc--eEEeccc--ccc
Confidence 877776666553 5677774 444 5899999999999999984332111100000 0000 0011100 011
Q ss_pred eeEEEEecCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEE------------
Q 003423 247 VNLFRLVGHEGSIFRIEWS-SCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD------------ 313 (821)
Q Consensus 247 ~~~~~~~~h~~~I~~l~~s-~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~------------ 313 (821)
.......+|...|.++.|+ |+++.|++++.|+++++||+..+.. . ..+..|...+..
T Consensus 245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~-----~-----~~l~~~~~~~~~~~~~~~~~~~~~ 314 (393)
T 4gq1_A 245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND-----Y-----NEISDSTMKLGPKNLLPNVQGISL 314 (393)
T ss_dssp C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------------CCSCSEEEECS
T ss_pred eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC-----C-----ceEeeecCccccEEEccccccccc
Confidence 2233446899999999987 7999999999999999999987654 1 122222222222
Q ss_pred ------EEEc---C-CEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 314 ------CCLT---D-SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 314 ------v~~~---~-~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
..+. + .++++++.||+|++||. .++.......|.. +|++++|+|+|++||+++.+| +.+|++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~-~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 315 FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM-PIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS-CEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC-cEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 2233 2 36678889999999999 6778888888887 699999999999999998766 7777763
No 114
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.94 E-value=2.9e-25 Score=241.83 Aligned_cols=254 Identities=13% Similarity=0.193 Sum_probs=198.1
Q ss_pred ccccEEeEEeccccCCCCCCccceeeEEEEE-cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEee
Q 003423 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLK 142 (821)
Q Consensus 64 ~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~-g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~ 142 (821)
+...|.+++|+|+. ..+++++ .++.|++|++........ ..........+.+|...|++++|+|
T Consensus 127 h~~~v~~l~~~p~~----------~~~lat~~~dg~V~vwd~~~~~~~~~-----~~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 127 HEGEVNRARYMPQN----------ACVIATKTPSSDVLVFDYTKHPSKPE-----PSGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp ESSCCSEEEEETTE----------EEEEEEECSSSCEEEEEGGGSCSSCC-----TTCCCCCSEEEECCSSCCCCEEECT
T ss_pred CCCcEEEEEECCCC----------CcEEEEECCCCcEEEEECCCcccccC-----ccccCCCcEEecCCCCCeEEEEeCC
Confidence 44579999999652 2355554 479999999975311000 0012456778889999999999999
Q ss_pred cCCCCC-EEEEEECCCcEEEEEccCCce-------eEEEccCcceeEEEEeeccCCc-cCeEEEEEeeCCEEEEEEcccC
Q 003423 143 VCNGNR-SLAIGCSDNSIRVWDISNSSI-------ILEVHSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWE 213 (821)
Q Consensus 143 ~~~~~~-~l~t~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~s~~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~ 213 (821)
++. +|++|+.||.|++||+.++.. ...+..+ ...+.++++. + ++.++++++.||.|++||++..
T Consensus 192 ---~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~---p~~~~~l~s~~~dg~i~i~d~~~~ 264 (430)
T 2xyi_A 192 ---NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGH-TAVVEDVAWH---LLHESLFGSVADDQKLMIWDTRNN 264 (430)
T ss_dssp ---TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCC-SSCEEEEEEC---SSCTTEEEEEETTSEEEEEETTCS
T ss_pred ---CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCC-CCCEeeeEEe---CCCCCEEEEEeCCCeEEEEECCCC
Confidence 877 999999999999999987432 2334343 3346777773 4 6789999999999999999811
Q ss_pred CcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEecccCcccC
Q 003423 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKD 292 (821)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~-~l~s~s~Dg~i~iwd~~~~~~~~ 292 (821)
.....+..+.+|...|.+++|+|+++ +|++|+.||+|++||++....
T Consensus 265 ------------------------------~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-- 312 (430)
T 2xyi_A 265 ------------------------------NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-- 312 (430)
T ss_dssp ------------------------------CSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--
T ss_pred ------------------------------CCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC--
Confidence 01245566779999999999999987 689999999999999987432
Q ss_pred CCCceeeeceEEeccceeEEEEEEcC---CEEEEEeCCCeEEEEcCCC---------------ceeeEeecccCCCeEEE
Q 003423 293 SDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGSDG---------------KQLKMIKEHIGRGIWRC 354 (821)
Q Consensus 293 ~~~~~~~~~~~~~~h~~~i~~v~~~~---~~l~s~~~dg~i~iwd~~~---------------~~~~~~~~h~~~~i~~l 354 (821)
.. ..+.+|...|++++|++ .+|++++.|+.|++||+.. +.+..+.+|.. .|+++
T Consensus 313 --~~-----~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~ 384 (430)
T 2xyi_A 313 --KL-----HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDF 384 (430)
T ss_dssp --CS-----EEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEE
T ss_pred --Ce-----EEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEE
Confidence 02 57788999999999983 4799999999999999932 56677778887 69999
Q ss_pred EEecCCC-EEEEEeCCCcEEEEEcCC
Q 003423 355 LYDSLSS-LLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 355 ~~~~~~~-~l~tg~~dg~I~iwd~~~ 379 (821)
+|+|+++ +|++++.||.|++|++..
T Consensus 385 ~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 385 SWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp EECSSSTTEEEEEETTSEEEEEEECH
T ss_pred EECCCCCCEEEEEECCCCEEEeEccc
Confidence 9999998 999999999999999965
No 115
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.94 E-value=4.1e-25 Score=238.68 Aligned_cols=259 Identities=10% Similarity=0.140 Sum_probs=199.1
Q ss_pred CCCCCcceeeccc-----------eeeeeeEEEEEeccC-CCCCCcceEEeec-CCeEEEEECCCC-------eeeeEEE
Q 003423 2 GKKDLSEWRLDVG-----------QYLGEISALCFVHLP-SHLSSLPFLLAGS-GSQVLLYDLEAG-------TLIRPFQ 61 (821)
Q Consensus 2 ~~~~i~~w~~~~~-----------~~~~~Vt~l~~~~~p-~~~~~~~~l~~g~-~~~i~iwd~~t~-------~~~~~~~ 61 (821)
.|+.|++|++... .|.++|++++|+ | + +.+|++|. |+.|+|||+.++ +.+..+.
T Consensus 55 ~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~--p~~----~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~ 128 (402)
T 2aq5_A 55 GGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWC--PHN----DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE 128 (402)
T ss_dssp SSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEEC--TTC----TTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE
T ss_pred CCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeC--CCC----CCEEEEEeCCCeEEEEEccCCCCccccCCceEEec
Confidence 5889999998553 177899999999 9 6 66777766 899999999988 5677777
Q ss_pred eeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeec--cCCCCcEEEEE
Q 003423 62 VFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL--PRLSHWVFDVC 139 (821)
Q Consensus 62 ~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~I~~~~ 139 (821)
.+.. .|.++.|+|++ . ..++++..|+.|++||+..+ +....+ .+|.+.|++++
T Consensus 129 ~h~~-~v~~~~~~p~~----~-----~~l~s~~~dg~i~iwd~~~~---------------~~~~~~~~~~~~~~v~~~~ 183 (402)
T 2aq5_A 129 GHTK-RVGIVAWHPTA----Q-----NVLLSAGCDNVILVWDVGTG---------------AAVLTLGPDVHPDTIYSVD 183 (402)
T ss_dssp CCSS-CEEEEEECSSB----T-----TEEEEEETTSCEEEEETTTT---------------EEEEEECTTTCCSCEEEEE
T ss_pred CCCC-eEEEEEECcCC----C-----CEEEEEcCCCEEEEEECCCC---------------CccEEEecCCCCCceEEEE
Confidence 6555 79999999663 1 14555566899999998743 456677 78999999999
Q ss_pred EeecCCCCCEEEEEECCCcEEEEEccCCceeEEE-ccCcceeEEEEeeccCCccCeEEEEE---eeCCEEEEEEcccCCc
Q 003423 140 FLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV-HSPERCLLYSMKLWGDNLEALRIASG---TIYNEIIVWKVDWEHV 215 (821)
Q Consensus 140 ~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~s~~~~~~s~~~~~l~sg---~~dg~i~vwd~~~~~~ 215 (821)
|+| ++++|++++.|+.|++||+.+++.+..+ ..+....+.++.+ ++++.++++| +.|+.|++||+...
T Consensus 184 ~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~g~~~~~d~~i~iwd~~~~-- 255 (402)
T 2aq5_A 184 WSR---DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF---VSEGKILTTGFSRMSERQVALWDTKHL-- 255 (402)
T ss_dssp ECT---TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEE---CSTTEEEEEEECTTCCEEEEEEETTBC--
T ss_pred ECC---CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEE---cCCCcEEEEeccCCCCceEEEEcCccc--
Confidence 999 9999999999999999999999998888 5555443455555 4789999999 79999999999811
Q ss_pred ccCCCCCCCcccCCCCCCcceeeecccccceeeEEE-EecCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEecccCcccCC
Q 003423 216 APLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR-LVGHEGSIFRIEWSSCGSKLV-SVSDDRSARIWEVRAEYWKDS 293 (821)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~I~~l~~s~~~~~l~-s~s~Dg~i~iwd~~~~~~~~~ 293 (821)
..++.. ...|...|.+++|+|++++|+ +++.|+.|++||+.+++.
T Consensus 256 ------------------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~--- 302 (402)
T 2aq5_A 256 ------------------------------EEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP--- 302 (402)
T ss_dssp ------------------------------SSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT---
T ss_pred ------------------------------cCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc---
Confidence 111222 225788899999999999986 455799999999998652
Q ss_pred CCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEcCC
Q 003423 294 DSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSD 336 (821)
Q Consensus 294 ~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~~ 336 (821)
.... .....|...|.+++|+++..+.++.++.+++|++.
T Consensus 303 --~~~~--l~~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~ 341 (402)
T 2aq5_A 303 --FLHY--LSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLH 341 (402)
T ss_dssp --CEEE--EEEECCSSCCSEEEECCGGGSCGGGTEEEEEEEEE
T ss_pred --ceEe--ecccccCCcccceEEecccccceecceeEEEEEcC
Confidence 1100 12223568999999996433334567799999984
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.7e-25 Score=255.80 Aligned_cols=251 Identities=17% Similarity=0.247 Sum_probs=200.0
Q ss_pred EEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEE
Q 003423 59 PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (821)
Q Consensus 59 ~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~ 138 (821)
.+..|.+ .|.+++|+|++ ..++++..|+.|++|++..+. ......+.+|.+.|+++
T Consensus 4 ~l~gH~~-~V~~l~~s~dg----------~~latg~~dg~I~vwd~~~~~-------------~~~~~~l~~h~~~V~~l 59 (753)
T 3jro_A 4 IANAHNE-LIHDAVLDYYG----------KRLATCSSDKTIKIFEVEGET-------------HKLIDTLTGHEGPVWRV 59 (753)
T ss_dssp ----CCC-CEEEECCCSSS----------CCEEEEETTTEEEEEEEETTE-------------EEEEEEECCCSSCEEEE
T ss_pred ecccCcc-eeEEEEECCCC----------CeEEEEECCCcEEEEecCCCC-------------CccceeccCCcCceEEE
Confidence 4455554 79999999663 246666679999999997432 46678899999999999
Q ss_pred EEeecCCC--CCEEEEEECCCcEEEEEccCCc--eeEEEccCcceeEEEEeeccCCcc--CeEEEEEeeCCEEEEEEccc
Q 003423 139 CFLKVCNG--NRSLAIGCSDNSIRVWDISNSS--IILEVHSPERCLLYSMKLWGDNLE--ALRIASGTIYNEIIVWKVDW 212 (821)
Q Consensus 139 ~~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~s~~~~~~s~~--~~~l~sg~~dg~i~vwd~~~ 212 (821)
+|+| + +++|++|+.||.|++||+.++. .+..+..+. ..+.++.+ +++ +.++++|+.||.|++||+..
T Consensus 60 ~~s~---~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~-~~V~~v~~---sp~~~~~~l~sgs~dg~I~vwdl~~ 132 (753)
T 3jro_A 60 DWAH---PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS-ASVNSVQW---APHEYGPLLLVASSDGKVSVVEFKE 132 (753)
T ss_dssp EECC---TTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS-SCEEEEEE---CCGGGCSEEEEEETTSEEEEEECCS
T ss_pred EecC---CCCCCEEEEEeCCCeEEEEECCCCcccccccccCCC-CCeEEEEE---CCCCCCCEEEEEeCCCcEEEEEeec
Confidence 9998 6 8999999999999999999987 455555444 35677777 466 88999999999999999982
Q ss_pred CCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcC-------------CCCEEEEEeCCCe
Q 003423 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-------------CGSKLVSVSDDRS 279 (821)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~-------------~~~~l~s~s~Dg~ 279 (821)
. .......+.+|...|.+++|+| ++++|++|+.||+
T Consensus 133 ~-------------------------------~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~ 181 (753)
T 3jro_A 133 N-------------------------------GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181 (753)
T ss_dssp S-------------------------------SCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSC
T ss_pred C-------------------------------CCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCe
Confidence 1 1233445678999999999999 5899999999999
Q ss_pred EEEEecccCcccCCCCc-eeeeceEEeccceeEEEEEEcC-----CEEEEEeCCCeEEEEcCC-Cc-----eeeEeeccc
Q 003423 280 ARIWEVRAEYWKDSDSI-EEVGSSVLYGHNARVWDCCLTD-----SFIITAGEDCTCRVWGSD-GK-----QLKMIKEHI 347 (821)
Q Consensus 280 i~iwd~~~~~~~~~~~~-~~~~~~~~~~h~~~i~~v~~~~-----~~l~s~~~dg~i~iwd~~-~~-----~~~~~~~h~ 347 (821)
|++||++++.. . ... ..+.+|...|++++|++ .++++++.||.|++||+. ++ .......|.
T Consensus 182 I~iwd~~~~~~-----~~~~~--~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 254 (753)
T 3jro_A 182 VKIWKYNSDAQ-----TYVLE--STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP 254 (753)
T ss_dssp EEEEEEETTTT-----EEEEE--EEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCS
T ss_pred EEEEeccCCcc-----cceee--eeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCC
Confidence 99999987643 2 222 47788999999999984 589999999999999993 32 333344466
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 348 GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 348 ~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
. .|++++|+|++++|++|+.||.|++|+++.
T Consensus 255 ~-~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 255 D-VLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp S-CCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred C-ceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 6 699999999999999999999999999964
No 117
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=8e-25 Score=234.95 Aligned_cols=278 Identities=13% Similarity=0.062 Sum_probs=164.9
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC----------CEEEE
Q 003423 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD----------SFIIT 323 (821)
Q Consensus 254 ~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~----------~~l~s 323 (821)
.|.+.+....+++++++|++++.|++|+|||...+.. ........+.+|...|++++|++ .+|+|
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~-----~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las 161 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETI-----ITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIAS 161 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEE-----EEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEE
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCcc-----ceeeeecccCCCCCceEEEEEccccccccCCCCCEEEE
Confidence 3445555555566777899999999999999988754 22111135678999999999963 68999
Q ss_pred EeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCC-CEEEEEeCCCcEEEEEcCCcC-CCcccCCccccccCCCcce
Q 003423 324 AGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQAFL-PGSLESHPEAKEFNGRTEI 400 (821)
Q Consensus 324 ~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~-~~l~tg~~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~ 400 (821)
++.|++|++||+ ++.++..+..|.. .+.+++|+|++ ++|++|+.||.|++||+.... ......+.
T Consensus 162 ~s~D~tv~~Wd~~~~~~~~~~~~~~~-~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~----------- 229 (393)
T 4gq1_A 162 VGDDCTLIIWRLTDEGPILAGYPLSS-PGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTE----------- 229 (393)
T ss_dssp EETTSEEEEEEEETTEEEEEEEECSS-CEEEEEEETTEEEEEEEEETTSEEEEEETTCCC--------------------
T ss_pred EECCCeEEEEECCCCceeeeecCCCC-CcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccC-----------
Confidence 999999999999 6777788888887 69999999987 589999999999999996531 11111100
Q ss_pred EEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCC
Q 003423 401 FSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYP 480 (821)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s 480 (821)
..+...+....+.+....... ..+...+.++.+.
T Consensus 230 ---------------~~~~~~~~s~~~~~~~~~~~~------------------------~~~~~~v~~v~~~------- 263 (393)
T 4gq1_A 230 ---------------LVKNPWLLTLNTLPLVNTCHS------------------------SGIASSLANVRWI------- 263 (393)
T ss_dssp ----------------CSCCCSEEEESGGGC------------------------------CCSSSCSEEEEE-------
T ss_pred ---------------CcccceEEecccccceeeeec------------------------ccccccceeeeee-------
Confidence 000001111111111100000 0011122222221
Q ss_pred CCCCcEEEEecCCccEEEEEecCCCCCCc------ceeEEeeccCcc-----ceeeeeEEeecCCCeEEEEECCCCcEEE
Q 003423 481 CGIDDWVALGDGKGNMTIVRVVGDVHTPQ------LSFTFTWSAGIE-----RQLLGTYWCKSLGHRFIFTADPKGRLKL 549 (821)
Q Consensus 481 ~~~~~~l~~g~~~g~i~i~~~~~~~~~~~------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~dg~i~i 549 (821)
.+++..+++++.|+.+++|++........ ......+.++.. .......+....++.++++++.||.|++
T Consensus 264 ~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~l 343 (393)
T 4gq1_A 264 GSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQL 343 (393)
T ss_dssp TTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEE
T ss_pred cCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEE
Confidence 14567778888888888888765432111 011111111110 0011111222346678889999999999
Q ss_pred eeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecC
Q 003423 550 WQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLL 610 (821)
Q Consensus 550 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~ 610 (821)
||+..+. +...+ ..|..+|++++|+|||++||+++.+| +.+|++.
T Consensus 344 wd~~~~~--------------~~~~~-~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 344 INTYEKD--------------SNSIP-IQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp EETTCTT--------------CCEEE-EECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EECCCCc--------------EEEEe-cCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 9998762 22232 56788999999999999999998765 6666654
No 118
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=7.6e-25 Score=230.84 Aligned_cols=272 Identities=8% Similarity=-0.036 Sum_probs=193.4
Q ss_pred cceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCC
Q 003423 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (821)
Q Consensus 35 ~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~ 113 (821)
+.++++|. |+.|++||+++++.+..+.. ..|..+.++|. ++.++.|+.+++|+...... .
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~---~~v~~~~~~~~-------------~~s~s~D~~i~~w~~~~~~~---~ 108 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTITTITT---PNPRTGGEHPA-------------IISRGPCNRLLLLYPGNQIT---I 108 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEEEEEE---ECCCTTCCCCS-------------EEEECSTTEEEEEETTTEEE---E
T ss_pred CCEEEEECCCCcEEEEECCCCcEEEEEec---CCceeeeeCCc-------------eEEecCCCeEEEEEccCceE---E
Confidence 45666665 99999999999998888772 24566666532 55566689999997652100 0
Q ss_pred CCCccccccceeee-ccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCcc
Q 003423 114 YQPETCVNLSLVQS-LPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (821)
Q Consensus 114 ~~~~~~~~~~~~~~-~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~ 192 (821)
+.. ...+.+.. ..+|.+.|.+++|+|. .++++|++|+.||+|++||+.+++.+.....+....+.+++| +|+
T Consensus 109 ~~~---~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~---~pd 181 (343)
T 3lrv_A 109 LDS---KTNKVLREIEVDSANEIIYMYGHNE-VNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVL---HKD 181 (343)
T ss_dssp EET---TTCCEEEEEECCCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEE---CTT
T ss_pred eec---CCcceeEEeecCCCCCEEEEEcCCC-CCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEE---CCC
Confidence 000 01122333 3367789999999871 156899999999999999999998876665555545667777 579
Q ss_pred CeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeE-EEEec-CCCcEEEEEEcCCCCE
Q 003423 193 ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL-FRLVG-HEGSIFRIEWSSCGSK 270 (821)
Q Consensus 193 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-h~~~I~~l~~s~~~~~ 270 (821)
+.++++|+.||.|++||++ ..... ..+.+ |.+.|.+++|+|++.+
T Consensus 182 g~~lasg~~dg~i~iwd~~---------------------------------~~~~~~~~~~~~h~~~v~~l~fs~~g~~ 228 (343)
T 3lrv_A 182 SLLLALYSPDGILDVYNLS---------------------------------SPDQASSRFPVDEEAKIKEVKFADNGYW 228 (343)
T ss_dssp SCEEEEECTTSCEEEEESS---------------------------------CTTSCCEECCCCTTSCEEEEEECTTSSE
T ss_pred CCEEEEEcCCCEEEEEECC---------------------------------CCCCCccEEeccCCCCEEEEEEeCCCCE
Confidence 9999999999999999998 33333 56677 9999999999999999
Q ss_pred EEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEE--EEEEc--CCEEEEEeC-CCeEEEEcCC-CceeeEee
Q 003423 271 LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW--DCCLT--DSFIITAGE-DCTCRVWGSD-GKQLKMIK 344 (821)
Q Consensus 271 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~--~v~~~--~~~l~s~~~-dg~i~iwd~~-~~~~~~~~ 344 (821)
|+++++| +|++||+++.+. ...+ ..+..|...+. +++|+ +.+|++++. |+.+++|+++ +......
T Consensus 229 l~s~~~~-~v~iwd~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~- 299 (343)
T 3lrv_A 229 MVVECDQ-TVVCFDLRKDVG-----TLAY--PTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK- 299 (343)
T ss_dssp EEEEESS-BEEEEETTSSTT-----CBSS--CCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-
T ss_pred EEEEeCC-eEEEEEcCCCCc-----ceee--cccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-
Confidence 9999955 999999998765 3211 12222334443 68898 589999888 9999999983 2222221
Q ss_pred cccCCCeEEEEEec---CCCEEEEEeCCCcEEEEEcC
Q 003423 345 EHIGRGIWRCLYDS---LSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 345 ~h~~~~i~~l~~~~---~~~~l~tg~~dg~I~iwd~~ 378 (821)
. ++..++|.+ +.+.+++++.||.+.++-..
T Consensus 300 ---~-~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 300 ---D-EESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp ---E-EEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred ---c-CceeEecCccccccceeEEEecCCceEEEEec
Confidence 2 477888888 88899999999999988653
No 119
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=3.6e-24 Score=214.43 Aligned_cols=284 Identities=13% Similarity=0.082 Sum_probs=182.9
Q ss_pred EEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEE
Q 003423 195 RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV 274 (821)
Q Consensus 195 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~ 274 (821)
.|+++ -...|++|+... ..+.+.++++.+|+.+|..|.+.||..-|++.
T Consensus 56 ~~~~~-~~~~v~lw~~~~------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 104 (356)
T 2w18_A 56 CIITA-CEDVVSLWKALD------------------------------AWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCV 104 (356)
T ss_dssp EEEEE-ESSEEEEEEESS------------------------------SSBEEEEEEEECCSSCEEEECCCTTCCSCEEE
T ss_pred EEEEe-ccceEEEcccCC------------------------------CccceeeEEEeccCceeEEEEEcCcccceeee
Confidence 45555 458999999981 12458899999999999999999976444332
Q ss_pred eCCCeE---EEEec--ccC-cccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEe---CCCeEEEEcC--CCceeeEe
Q 003423 275 SDDRSA---RIWEV--RAE-YWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAG---EDCTCRVWGS--DGKQLKMI 343 (821)
Q Consensus 275 s~Dg~i---~iwd~--~~~-~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~---~dg~i~iwd~--~~~~~~~~ 343 (821)
.- |.+ .++-+ ... +. .... ....+|...|+++ ....+++.+ .|+.|++|++ +|+.+..+
T Consensus 105 ~~-~~~~~~~v~sla~spd~~~-----~~~~--l~s~g~~~~v~~l--~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~ 174 (356)
T 2w18_A 105 AL-GNLEIREIRALFCSSDDES-----EKQV--LLKSGNIKAVLGL--TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ 174 (356)
T ss_dssp EE-CSSSEEEEEEECC-----------CCEE--EEEEEEEEEEEEE--TTTEEEEEESSSTTCEEEEEEECTTSCEEEEE
T ss_pred ee-ccccccceEEEEECCCccc-----cccE--EEeCCCeEEEEec--CCCcEEEecccCCCCcEEEEEECCCCceeeee
Confidence 21 111 11111 111 00 0111 2334566677765 445555554 5999999999 58888999
Q ss_pred ecccCCCeEEEEEec---CCCEEEEEeCCCcEEEEEcCC-cCCCcccCCccccccCCCcceEEeecCCcccceeccCCCC
Q 003423 344 KEHIGRGIWRCLYDS---LSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKS 419 (821)
Q Consensus 344 ~~h~~~~i~~l~~~~---~~~~l~tg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (821)
.+|.. .+..++|++ ++..|++|+.|++|++||+++ ++++++.++. .+.
T Consensus 175 ~~~~~-~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~---------------------------~~v 226 (356)
T 2w18_A 175 FLMPP-EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD---------------------------SYQ 226 (356)
T ss_dssp EECCC-SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC------------------------------
T ss_pred ccCCC-ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC---------------------------cce
Confidence 99988 589999998 779999999999999999964 4445443321 011
Q ss_pred cceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEE
Q 003423 420 EYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIV 499 (821)
Q Consensus 420 ~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~ 499 (821)
..+.+++|+|++.++++..... ....+++|+.|+++++|
T Consensus 227 ~~v~~vafSpdG~~lvs~s~~~-----------------------------------------~~w~laSGs~D~tIklW 265 (356)
T 2w18_A 227 ASVCHKAYSEMGLLFIVLSHPC-----------------------------------------AKESESLRSPVFQLIVI 265 (356)
T ss_dssp CCCEEEEEEETTEEEEEEC-----------------------------------------------------CCEEEEEE
T ss_pred eeeEEEEECCCCCEEEEeccCC-----------------------------------------CcceeeccCCCcEEEEE
Confidence 3478899999998887754210 01246788899999999
Q ss_pred EecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEeccc
Q 003423 500 RVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCF 579 (821)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h 579 (821)
+..++.... ...+.+ |+..... +...+.++.++++++.||+|+|||+..+ ++...+ .+|
T Consensus 266 d~~tgk~l~--v~~~~~-p~Gh~~~---~lsg~~sg~~lASgS~DgTIkIWDl~tG--------------k~l~tL-~gH 324 (356)
T 2w18_A 266 NPKTTLSVG--VMLYCL-PPGQAGR---FLEGDVKDHCAAAILTSGTIAIWDLLLG--------------QCTALL-PPV 324 (356)
T ss_dssp ETTTTEEEE--EEEECC-CTTCCCC---EEEEEEETTEEEEEETTSCEEEEETTTC--------------SEEEEE-CCC
T ss_pred ECCCCEEEE--EEEeec-cCCCcce---eEccccCCCEEEEEcCCCcEEEEECCCC--------------cEEEEe-cCC
Confidence 987654321 111111 2221100 1111222567899999999999999988 677776 667
Q ss_pred CceEE-EEEeecCCCEEEEEcCCCcEEEEec
Q 003423 580 GARIM-CLDASFEDEVLFCGDLRGNLVLFPL 609 (821)
Q Consensus 580 ~~~I~-~l~~s~~~~~L~sgs~dG~i~iw~~ 609 (821)
...+. +++||||+++|++|+.||+|+|||+
T Consensus 325 ~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 325 SDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp --CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 66544 6899999999999999999999985
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.93 E-value=7.7e-24 Score=231.34 Aligned_cols=275 Identities=12% Similarity=0.042 Sum_probs=212.4
Q ss_pred eeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEe----eccccEEeEEeccccCCCCCCccceeeEEE
Q 003423 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQV----FHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (821)
Q Consensus 18 ~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~----~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~ 92 (821)
..+.+++|+ |+ +.+++++. ++.|++||+.+++.+..+.. .+...|.++.+++++ ..+++
T Consensus 123 ~~~~~~~~s--~~----~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~~~s 186 (433)
T 3bws_A 123 FQPKSVRFI--DN----TRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN----------ELWVS 186 (433)
T ss_dssp SCBCCCEES--SS----SEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT----------EEEEE
T ss_pred CCceEEEEe--CC----CeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC----------EEEEE
Confidence 346789999 87 56777665 68999999999998764432 123378999998653 23334
Q ss_pred EEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEE-ECCCcEEEEEccCCceeE
Q 003423 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIIL 171 (821)
Q Consensus 93 ~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~-~~d~~i~iwd~~~~~~~~ 171 (821)
...++.|++|++... +....+..|...+.+++|+| +++.++++ +.|+.|++||+.+++.+.
T Consensus 187 ~~~d~~v~~~d~~~~---------------~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~i~~~d~~~~~~~~ 248 (433)
T 3bws_A 187 QMQANAVHVFDLKTL---------------AYKATVDLTGKWSKILLYDP---IRDLVYCSNWISEDISVIDRKTKLEIR 248 (433)
T ss_dssp EGGGTEEEEEETTTC---------------CEEEEEECSSSSEEEEEEET---TTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred ECCCCEEEEEECCCc---------------eEEEEEcCCCCCeeEEEEcC---CCCEEEEEecCCCcEEEEECCCCcEEE
Confidence 445799999998643 45667778999999999999 98887554 479999999999998887
Q ss_pred EEccCcceeEEEEeeccCCccCeEEEEEe--------eCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccc
Q 003423 172 EVHSPERCLLYSMKLWGDNLEALRIASGT--------IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (821)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~s~~~~~l~sg~--------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (821)
.+..+.. +.++++ ++++.++++++ .||.|++||+.
T Consensus 249 ~~~~~~~--~~~~~~---~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~-------------------------------- 291 (433)
T 3bws_A 249 KTDKIGL--PRGLLL---SKDGKELYIAQFSASNQESGGGRLGIYSMD-------------------------------- 291 (433)
T ss_dssp ECCCCSE--EEEEEE---CTTSSEEEEEEEESCTTCSCCEEEEEEETT--------------------------------
T ss_pred EecCCCC--ceEEEE---cCCCCEEEEEECCCCccccCCCeEEEEECC--------------------------------
Confidence 7765443 556666 57888888887 48899999998
Q ss_pred cceeeEEEEecCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCE
Q 003423 244 HTAVNLFRLVGHEGSIFRIEWSSCGSK-LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSF 320 (821)
Q Consensus 244 ~~~~~~~~~~~h~~~I~~l~~s~~~~~-l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~ 320 (821)
..+.+..+ .|.+.+.+++|+|+++. +++++.|+.|++||+.+++. .....+...+.+++|+ +.+
T Consensus 292 -~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~-----------~~~~~~~~~~~~~~~s~dg~~ 358 (433)
T 3bws_A 292 -KEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV-----------QKSIPVFDKPNTIALSPDGKY 358 (433)
T ss_dssp -TTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE-----------EEEEECSSSEEEEEECTTSSE
T ss_pred -CCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE-----------EEEecCCCCCCeEEEcCCCCE
Confidence 33444433 56678999999999975 57779999999999997654 2333467789999998 467
Q ss_pred EEEEeC---------------CCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeC-CCcEEEEEcC
Q 003423 321 IITAGE---------------DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF-DSAIKVHQFQ 378 (821)
Q Consensus 321 l~s~~~---------------dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~-dg~I~iwd~~ 378 (821)
+++++. ||.|++||+ +++.+..+..+. .+.+++|+|++++|++++. |+.|++|+++
T Consensus 359 l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 359 LYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN--QPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS--SEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC--CCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 887776 579999999 677777777643 5899999999999998875 9999999985
No 121
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=5.4e-23 Score=249.23 Aligned_cols=484 Identities=14% Similarity=0.054 Sum_probs=301.3
Q ss_pred CCCcceeeccce------eeeeeEEEEEeccCCCCCCcceEEeec-C------CeEEEEECCCCeeeeEEEeeccccE--
Q 003423 4 KDLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGS-G------SQVLLYDLEAGTLIRPFQVFHGIRL-- 68 (821)
Q Consensus 4 ~~i~~w~~~~~~------~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~------~~i~iwd~~t~~~~~~~~~~~~~~i-- 68 (821)
+.|.+|++..++ |.+.|.+++|| || +++|+.+. + ..|.+||+.+++. .++..+.. .+
T Consensus 33 ~~l~~~~~~gg~~~~lt~~~~~v~~~~~S--PD----G~~la~~s~~~~~~~~~~i~~~d~~~g~~-~~lt~~~~-~~~~ 104 (1045)
T 1k32_A 33 DDLWEHDLKSGSTRKIVSNLGVINNARFF--PD----GRKIAIRVMRGSSLNTADLYFYNGENGEI-KRITYFSG-KSTG 104 (1045)
T ss_dssp TEEEEEETTTCCEEEEECSSSEEEEEEEC--TT----SSEEEEEEEESTTCCEEEEEEEETTTTEE-EECCCCCE-EEET
T ss_pred CcEEEEECCCCcEEEeeeCCCcccCeEEC--CC----CCEEEEEEeeccCCCCCeEEEEECCCCCe-EEcccCCC-cccc
Confidence 468889988775 66789999999 99 66666543 2 4899999998874 45554333 45
Q ss_pred -----EeEEeccccCCCCCCccceeeEEEEEc-C----C--eEEEEEEeecCCCCCCCCC--------------------
Q 003423 69 -----HGISCNFINCTEGSVSTRVTFEVALFG-E----K--RVKLFELNFELSPNSQYQP-------------------- 116 (821)
Q Consensus 69 -----~~i~~~~~~~~~~~~~~~~~~~l~~~g-~----~--~v~i~~~~~~~~~~~~~~~-------------------- 116 (821)
..+.|+|++ .++++.. + + .|.+|++..+........+
T Consensus 105 ~~~~~~~~~~SpDg-----------~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~ 173 (1045)
T 1k32_A 105 RRMFTDVAGFDPDG-----------NLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFEL 173 (1045)
T ss_dssp TEECSEEEEECTTC-----------CEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCC
T ss_pred cccccccccCCCCC-----------EEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCc
Confidence 789999664 2444443 2 3 4555655322100000000
Q ss_pred --------cc--cc----ccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccC-CceeEEEccCcceeE
Q 003423 117 --------ET--CV----NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN-SSIILEVHSPERCLL 181 (821)
Q Consensus 117 --------~~--~~----~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~ 181 (821)
+. .+ .......+.+|...+.++.|++ + .++++++.|+.++||.+.. +.....+..+...
T Consensus 174 ~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~---d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~-- 247 (1045)
T 1k32_A 174 PHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG---H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDY-- 247 (1045)
T ss_dssp TTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET---T-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSS--
T ss_pred cccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeC---C-EEEEEEeccCceEEEEEeCCCCcceEecCCCCc--
Confidence 00 00 0012345578999999999998 6 6777788889999998764 4444555444321
Q ss_pred EEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEE
Q 003423 182 YSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFR 261 (821)
Q Consensus 182 ~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 261 (821)
....+ ++++..|+.+ .++.|.+|+........ +.... .... .....|.+.+.+
T Consensus 248 ~~~~~---SpDG~~la~~-~~~~i~~~d~~~~~l~~---------l~~~~------------~~~~--~~~~~~~~~v~~ 300 (1045)
T 1k32_A 248 YPRHL---NTDGRRILFS-KGGSIYIFNPDTEKIEK---------IEIGD------------LESP--EDRIISIPSKFA 300 (1045)
T ss_dssp CEEEE---EESSSCEEEE-ETTEEEEECTTTCCEEE---------CCCCC------------CCBC--CSEEEECGGGGE
T ss_pred ceeeE---cCCCCEEEEE-eCCEEEEecCCceEeee---------eccCc------------cccc--ccccccccccce
Confidence 22233 4788888887 58999999985111100 00000 0000 011236678999
Q ss_pred EEEc-CCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccce-eEEEEEEc-CCEEEEEeCCCeEE-EEcCCC
Q 003423 262 IEWS-SCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA-RVWDCCLT-DSFIITAGEDCTCR-VWGSDG 337 (821)
Q Consensus 262 l~~s-~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~v~~~-~~~l~s~~~dg~i~-iwd~~~ 337 (821)
++|+ |+|++|++++ ++.|.+|++..+.. ..+..|.. .+..++|+ +..+++++.++.+. +|++.+
T Consensus 301 ~~~S~pdG~~la~~~-~~~i~~~~~~~~~~-----------~~~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~ 368 (1045)
T 1k32_A 301 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYV-----------LKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT 368 (1045)
T ss_dssp EEEEECGGGCEEEEE-TTEEEEECTTSSBE-----------EECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTT
T ss_pred eeecCCCCCEEEEEE-cCEEEEEcCCCCce-----------EEccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCC
Confidence 9999 9999999888 78999999987654 35566776 88899888 45788888888888 889866
Q ss_pred ceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCC
Q 003423 338 KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDS 417 (821)
Q Consensus 338 ~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (821)
.....+..|.. .+..++|+|+|++|++++.++.|++||+.+..... ....
T Consensus 369 ~~~~~l~~~~~-~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~-----------------------------~~~~ 418 (1045)
T 1k32_A 369 GKAEKFEENLG-NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV-----------------------------IERS 418 (1045)
T ss_dssp CCEEECCCCCC-SEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-----------------------------EEEC
T ss_pred CCceEecCCcc-ceeeeEECCCCCEEEEECCCCeEEEEECCCCceEE-----------------------------eccC
Confidence 55556666666 69999999999999999999999999995421111 1112
Q ss_pred CCcceEEEEeecCCeEEEEecC-C-------cEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEE
Q 003423 418 KSEYVRCLHLTSEDTLYIATNH-G-------YLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVAL 489 (821)
Q Consensus 418 ~~~~i~~l~f~~~~~~l~~~~~-g-------~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~ 489 (821)
+...+..++|+|+|+.++.+.. + ....+.+|+..+.....+. .+...+..+.+. ++++.++.
T Consensus 419 ~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~--~~~~~~~~~~~s--------pdG~~l~~ 488 (1045)
T 1k32_A 419 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT--TENSHDYAPAFD--------ADSKNLYY 488 (1045)
T ss_dssp SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS--CSSSBEEEEEEC--------TTSCEEEE
T ss_pred CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEee--CCCcccCCceEc--------CCCCEEEE
Confidence 3455788999999987766543 1 1234456665544422222 123344445554 35688888
Q ss_pred ecCCccEEEEEecCCCC---CCcceeEEeec---------------------------------cCccceeeeeEEeecC
Q 003423 490 GDGKGNMTIVRVVGDVH---TPQLSFTFTWS---------------------------------AGIERQLLGTYWCKSL 533 (821)
Q Consensus 490 g~~~g~i~i~~~~~~~~---~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~ 533 (821)
++.++....|+...... .......+.+. +...... ....+++
T Consensus 489 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~--~~~~~s~ 566 (1045)
T 1k32_A 489 LSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY--RMIIPLE 566 (1045)
T ss_dssp EESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCE--EEEEECS
T ss_pred EecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCCh--hheEEcC
Confidence 88777666665432111 00000000000 0000111 1234678
Q ss_pred CCeEEEE-------------ECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcC
Q 003423 534 GHRFIFT-------------ADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDL 600 (821)
Q Consensus 534 ~~~~l~~-------------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~ 600 (821)
+++++++ .+....|.+||+.... . ..+ ...+.+++|||||+.|++++.
T Consensus 567 dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~--------------~-~~l----~~~v~~~~~S~DG~~l~~~~~ 627 (1045)
T 1k32_A 567 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK--------------V-TEV----KNNLTDLRLSADRKTVMVRKD 627 (1045)
T ss_dssp SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC--------------E-EEE----EEEEEEEEECTTSCEEEEEET
T ss_pred CCeEEEEecccCcccccccccCCCceEEEEECCCCc--------------E-EEe----ecCcceEEECCCCCEEEEEcC
Confidence 8887775 1224467777776652 1 112 155789999999999999987
Q ss_pred CCcEEEEecCccc
Q 003423 601 RGNLVLFPLLRDL 613 (821)
Q Consensus 601 dG~i~iw~~~~~~ 613 (821)
+ .|++||+....
T Consensus 628 ~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 628 D-GKIYTFPLEKP 639 (1045)
T ss_dssp T-SCEEEEESSCT
T ss_pred C-cEEEEeCccCc
Confidence 6 89999996543
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.93 E-value=5.1e-23 Score=224.77 Aligned_cols=204 Identities=11% Similarity=0.005 Sum_probs=159.3
Q ss_pred ceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEcc----CcceeEEEEeeccCCccCeEEEE
Q 003423 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS----PERCLLYSMKLWGDNLEALRIAS 198 (821)
Q Consensus 123 ~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~s~~~~~~s~~~~~l~s 198 (821)
+....+..+. .+.+++|+| ++.++++++.++.|++||+.+++....+.. .+...+.++.+ ++++.++++
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~---~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~s 186 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFID---NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISI---PEHNELWVS 186 (433)
T ss_dssp EEEEEEECSS-CBCCCEESS---SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEE---GGGTEEEEE
T ss_pred eEEEEEcCCC-CceEEEEeC---CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEE---cCCCEEEEE
Confidence 4555555554 466999999 888999998899999999999988764321 22335667766 578999999
Q ss_pred EeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEE-EEeCC
Q 003423 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLV-SVSDD 277 (821)
Q Consensus 199 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~-s~s~D 277 (821)
++.|+.|++||+. ..+.+..+..|...+.+++|+|++++++ +++.|
T Consensus 187 ~~~d~~v~~~d~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (433)
T 3bws_A 187 QMQANAVHVFDLK---------------------------------TLAYKATVDLTGKWSKILLYDPIRDLVYCSNWIS 233 (433)
T ss_dssp EGGGTEEEEEETT---------------------------------TCCEEEEEECSSSSEEEEEEETTTTEEEEEETTT
T ss_pred ECCCCEEEEEECC---------------------------------CceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCC
Confidence 9999999999998 5566777888999999999999999874 55589
Q ss_pred CeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEe--------CCCeEEEEcC-CCceeeEeecc
Q 003423 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG--------EDCTCRVWGS-DGKQLKMIKEH 346 (821)
Q Consensus 278 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~--------~dg~i~iwd~-~~~~~~~~~~h 346 (821)
+.|++||+.+++. . ....+...+.+++|+ ++++++++ .|+.|++||+ +++.+..+ .+
T Consensus 234 ~~i~~~d~~~~~~-----~------~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~ 301 (433)
T 3bws_A 234 EDISVIDRKTKLE-----I------RKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GP 301 (433)
T ss_dssp TEEEEEETTTTEE-----E------EECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EE
T ss_pred CcEEEEECCCCcE-----E------EEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cC
Confidence 9999999988654 2 223334568999998 46888887 5899999999 55555554 44
Q ss_pred cCCCeEEEEEecCCCE-EEEEeCCCcEEEEEcCC
Q 003423 347 IGRGIWRCLYDSLSSL-LVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 347 ~~~~i~~l~~~~~~~~-l~tg~~dg~I~iwd~~~ 379 (821)
.. .+.+++|+|+++. +++++.|+.|++||+++
T Consensus 302 ~~-~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~ 334 (433)
T 3bws_A 302 PG-NKRHIVSGNTENKIYVSDMCCSKIEVYDLKE 334 (433)
T ss_dssp EE-CEEEEEECSSTTEEEEEETTTTEEEEEETTT
T ss_pred CC-CcceEEECCCCCEEEEEecCCCEEEEEECCC
Confidence 44 5899999999975 46678999999999854
No 123
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.93 E-value=1.5e-23 Score=221.60 Aligned_cols=252 Identities=14% Similarity=0.093 Sum_probs=171.1
Q ss_pred EEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeee
Q 003423 48 LYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQS 127 (821)
Q Consensus 48 iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (821)
||++.+.+++...+.+.. .|.+++|+|++ .+++++++..+++|++... +....
T Consensus 3 i~s~~~~~~~~~~~~h~~-~V~~v~fs~dg-----------~~la~g~~~~~~iw~~~~~---------------~~~~~ 55 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSN-PVTDYEFNQDQ-----------SCLILSTLKSFEIYNVHPV---------------AHIMS 55 (355)
T ss_dssp ----------------CC-CCCEEEECTTS-----------SEEEEECSSEEEEEEETTE---------------EEEEE
T ss_pred cccccccCCccccccCCC-ceEEEEECCCC-----------CEEEEEcCCEEEEEecCCc---------------ceeee
Confidence 577777777776666554 79999999764 4778888888999997643 22222
Q ss_pred ccCCCCcEEEEEEeecCCCCCEE-EEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEE
Q 003423 128 LPRLSHWVFDVCFLKVCNGNRSL-AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEII 206 (821)
Q Consensus 128 ~~~h~~~I~~~~~~~~~~~~~~l-~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~ 206 (821)
.. ...+..+++.+ +++.+ ++++.|++|++||..+++.+..+..+. .+.++.+ +++ .++++ .++.|+
T Consensus 56 ~~--~~~~~~~~~~~---~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~--~v~~v~~---~~~--~~~~~-~~~~i~ 122 (355)
T 3vu4_A 56 QE--MRHLSKVRMLH---RTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDA--PVKDLFL---SRE--FIVVS-YGDVIS 122 (355)
T ss_dssp EE--CSCCCEEEECT---TSSEEEEECSSTTEEEEEETTTTEEEEEEECSS--CEEEEEE---CSS--EEEEE-ETTEEE
T ss_pred ee--cCCeEEEEEcC---CCCEEEEEECCccEEEEEECCCCcEEEEEECCC--ceEEEEE---cCC--EEEEE-EcCEEE
Confidence 21 12477788888 77776 567778999999999999988876443 4666766 333 33333 479999
Q ss_pred EEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEE--EeCCCeEEEEe
Q 003423 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS--VSDDRSARIWE 284 (821)
Q Consensus 207 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s--~s~Dg~i~iwd 284 (821)
+||+... .+.+..+.. ....+++++ .+++. ++.||.|++||
T Consensus 123 i~d~~~~--------------------------------~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd 165 (355)
T 3vu4_A 123 VFKFGNP--------------------------------WKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITK 165 (355)
T ss_dssp EEESSTT--------------------------------CCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEE
T ss_pred EEECCCC--------------------------------ceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEE
Confidence 9999821 012222222 333455666 56665 58899999999
Q ss_pred cccCcccCCC-------Ccee-eeceEEeccceeEEEEEEc--CCEEEEEeCCCe-EEEEcC-CCceeeEee-c-ccCCC
Q 003423 285 VRAEYWKDSD-------SIEE-VGSSVLYGHNARVWDCCLT--DSFIITAGEDCT-CRVWGS-DGKQLKMIK-E-HIGRG 350 (821)
Q Consensus 285 ~~~~~~~~~~-------~~~~-~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~-i~iwd~-~~~~~~~~~-~-h~~~~ 350 (821)
+.++...... ...+ + ..+.+|...|++++|+ +.+|++++.|++ |++||+ +++++..+. + |.. .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~p~~--~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~-~ 242 (355)
T 3vu4_A 166 LQSSGSATTQDQGVQQKAILGKG--VLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA-D 242 (355)
T ss_dssp CCC------------------CC--EEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCS-C
T ss_pred CCCCCccccccccccccccCccc--EEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCC-c
Confidence 9875410000 0001 1 5788999999999998 589999999998 999999 788999998 5 777 6
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 351 IWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 351 i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
|.+++|+|++++|++++.|+.|++||++.
T Consensus 243 v~~~~~s~~~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 243 VVDMKWSTDGSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp EEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred EEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence 99999999999999999999999999954
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.93 E-value=1.1e-22 Score=218.93 Aligned_cols=261 Identities=11% Similarity=0.038 Sum_probs=204.8
Q ss_pred ceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE-cCCeEEEEEEeecCCCCCC
Q 003423 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQ 113 (821)
Q Consensus 36 ~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~-g~~~v~i~~~~~~~~~~~~ 113 (821)
.+++++. ++.|++||+++++.+..+..+. .+.+++|+|++ ..++++. .++.|++||+..+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg----------~~l~~~~~~d~~i~v~d~~~~------ 64 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS--NPMGAVISPDG----------TKVYVANAHSNDVSIIDTATN------ 64 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS--SEEEEEECTTS----------SEEEEEEGGGTEEEEEETTTT------
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC--CcceEEECCCC----------CEEEEECCCCCeEEEEECCCC------
Confidence 4555554 8999999999999998888644 48999999663 2343444 5899999998643
Q ss_pred CCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEE-CCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCcc
Q 003423 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (821)
Q Consensus 114 ~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~ 192 (821)
+....+..+. .+.+++|+| ++++|++++ .++.|++||+.+++.+..+..+.. +.++.+ +++
T Consensus 65 ---------~~~~~~~~~~-~v~~~~~sp---dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~~---s~d 126 (391)
T 1l0q_A 65 ---------NVIATVPAGS-SPQGVAVSP---DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS--PLGLAL---SPD 126 (391)
T ss_dssp ---------EEEEEEECSS-SEEEEEECT---TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS--EEEEEE---CTT
T ss_pred ---------eEEEEEECCC-CccceEECC---CCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCC--cceEEE---CCC
Confidence 4455555554 899999999 999876554 679999999999988877765543 456666 577
Q ss_pred CeEE-EEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEE
Q 003423 193 ALRI-ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (821)
Q Consensus 193 ~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l 271 (821)
+..+ ++++.++.|++||+. ..+.+..+..| ..+.+++|+|++++|
T Consensus 127 g~~l~~~~~~~~~v~~~d~~---------------------------------~~~~~~~~~~~-~~~~~~~~~~dg~~l 172 (391)
T 1l0q_A 127 GKKLYVTNNGDKTVSVINTV---------------------------------TKAVINTVSVG-RSPKGIAVTPDGTKV 172 (391)
T ss_dssp SSEEEEEETTTTEEEEEETT---------------------------------TTEEEEEEECC-SSEEEEEECTTSSEE
T ss_pred CCEEEEEeCCCCEEEEEECC---------------------------------CCcEEEEEecC-CCcceEEECCCCCEE
Confidence 7766 788889999999998 55666666655 456999999999887
Q ss_pred -EEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEe---CCCeEEEEcC-CCceeeEee
Q 003423 272 -VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG---EDCTCRVWGS-DGKQLKMIK 344 (821)
Q Consensus 272 -~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~---~dg~i~iwd~-~~~~~~~~~ 344 (821)
++++.|+.|++||+.+++. .....+...+.+++|+ +.++++++ .++.|++||+ .++.+..+.
T Consensus 173 ~~~~~~~~~v~~~d~~~~~~-----------~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~ 241 (391)
T 1l0q_A 173 YVANFDSMSISVIDTVTNSV-----------IDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP 241 (391)
T ss_dssp EEEETTTTEEEEEETTTTEE-----------EEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCeE-----------EEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe
Confidence 6788899999999988755 2344466788999998 46788777 6899999999 677777887
Q ss_pred cccCCCeEEEEEecCCCEE-EEEeCCCcEEEEEcCC
Q 003423 345 EHIGRGIWRCLYDSLSSLL-VTAGFDSAIKVHQFQA 379 (821)
Q Consensus 345 ~h~~~~i~~l~~~~~~~~l-~tg~~dg~I~iwd~~~ 379 (821)
.+. .+.+++|+|++++| ++++.|+.|++||+..
T Consensus 242 ~~~--~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 242 VGP--DPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp CCS--SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred cCC--CccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 765 38899999999877 6778899999999954
No 125
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.3e-23 Score=221.44 Aligned_cols=272 Identities=11% Similarity=0.035 Sum_probs=188.2
Q ss_pred CCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCc
Q 003423 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (821)
Q Consensus 146 ~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~ 225 (821)
++.+|++|+.||.|++||+.+++.+..+.. ..+.++.+ .++ +++|+.|+.|++|+....
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~---~~v~~~~~---~~~---~~s~s~D~~i~~w~~~~~------------ 105 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTITT---PNPRTGGE---HPA---IISRGPCNRLLLLYPGNQ------------ 105 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEEE---ECCCTTCC---CCS---EEEECSTTEEEEEETTTE------------
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEec---CCceeeee---CCc---eEEecCCCeEEEEEccCc------------
Confidence 788999999999999999999988877762 12223333 233 999999999999987711
Q ss_pred ccCCCCCCcceeeecccccceeeEEEEe-cCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEecccCcccCCCCceeeece
Q 003423 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSS--CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS 302 (821)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~I~~l~~s~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 302 (821)
+.+++.. ..+.+..+. +|.+.|.+++|+| ++++|++++.||+|++||+.+++. . .
T Consensus 106 -----------~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-----~-----~ 163 (343)
T 3lrv_A 106 -----------ITILDSK-TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-----Y-----I 163 (343)
T ss_dssp -----------EEEEETT-TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-----E-----E
T ss_pred -----------eEEeecC-CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-----E-----E
Confidence 0111111 223233333 7889999999999 999999999999999999998754 2 1
Q ss_pred EE-eccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCcee-eEeec-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 003423 303 VL-YGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQL-KMIKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (821)
Q Consensus 303 ~~-~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~-~~~~~-h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd 376 (821)
.. ..|...|.+++|+ +.+|++|+.||.|++||+ +++.+ ..+.. |.+ .|++++|+|++.+|++++ |+.|++||
T Consensus 164 ~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~-~v~~l~fs~~g~~l~s~~-~~~v~iwd 241 (343)
T 3lrv_A 164 VHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEA-KIKEVKFADNGYWMVVEC-DQTVVCFD 241 (343)
T ss_dssp EECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTS-CEEEEEECTTSSEEEEEE-SSBEEEEE
T ss_pred EEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCC-CEEEEEEeCCCCEEEEEe-CCeEEEEE
Confidence 22 3456689999998 579999999999999999 66666 67887 887 799999999999999999 55999999
Q ss_pred cCCc-CCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcce--EEEEeecCCeEEEEec--CCcEEEEEecCCC
Q 003423 377 FQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYV--RCLHLTSEDTLYIATN--HGYLYHTKLCDMD 451 (821)
Q Consensus 377 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~l~f~~~~~~l~~~~--~g~~~~~~i~~~~ 451 (821)
++.. ....++.. ..+...+ .+++|+|++.+++++. ++.+..+++...
T Consensus 242 ~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~- 293 (343)
T 3lrv_A 242 LRKDVGTLAYPTY---------------------------TIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK- 293 (343)
T ss_dssp TTSSTTCBSSCCC---------------------------BC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT-
T ss_pred cCCCCcceeeccc---------------------------ccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc-
Confidence 9652 22222110 0001112 5799999998888743 566665544322
Q ss_pred cceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEec
Q 003423 452 SVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVV 502 (821)
Q Consensus 452 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~ 502 (821)
...|.. .++.++.+.+.. .+...+++++.+|.+.++-..
T Consensus 294 ~~~~~~-------~~~~~~~~~~~~-----~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 294 TKNWTK-------DEESALCLQSDT-----ADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp TCSEEE-------EEEEECCC---------CCCCEEEEEEETTEEEEEEEC
T ss_pred ccceEe-------cCceeEecCccc-----cccceeEEEecCCceEEEEec
Confidence 223443 233333333211 245788889999988887543
No 126
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.92 E-value=1.7e-23 Score=227.71 Aligned_cols=265 Identities=14% Similarity=0.203 Sum_probs=197.7
Q ss_pred eeccCCCCcEEEEEEeecCCC-CCEEEEEECCCcEEEEEccC----------CceeEEEccCcceeEEEEeeccCCccCe
Q 003423 126 QSLPRLSHWVFDVCFLKVCNG-NRSLAIGCSDNSIRVWDISN----------SSIILEVHSPERCLLYSMKLWGDNLEAL 194 (821)
Q Consensus 126 ~~~~~h~~~I~~~~~~~~~~~-~~~l~t~~~d~~i~iwd~~~----------~~~~~~~~~~~~~~~~s~~~~~~s~~~~ 194 (821)
.....|.+.|++++|+| + +.+||+++.||.|++||+.+ ...+..+..|.. .++++++ ++++.
T Consensus 122 ~~~~~h~~~v~~l~~~p---~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~---~~~~~ 194 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMP---QNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK-EGYGLSW---NPNLN 194 (430)
T ss_dssp EEEEEESSCCSEEEEET---TEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS-CCCCEEE---CTTST
T ss_pred EEEEcCCCcEEEEEECC---CCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC-CeEEEEe---CCCCC
Confidence 44557999999999999 7 67999999999999999986 455666666654 3456666 45666
Q ss_pred -EEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcC-CCCEEE
Q 003423 195 -RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLV 272 (821)
Q Consensus 195 -~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~-~~~~l~ 272 (821)
+|++|+.||.|++|++...... .........+.+|.+.|.+++|+| ++.+|+
T Consensus 195 ~~l~s~~~dg~i~vwd~~~~~~~--------------------------~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~ 248 (430)
T 2xyi_A 195 GYLLSASDDHTICLWDINATPKE--------------------------HRVIDAKNIFTGHTAVVEDVAWHLLHESLFG 248 (430)
T ss_dssp TEEEEECTTSCEEEEETTSCCBG--------------------------GGEEECSEEECCCSSCEEEEEECSSCTTEEE
T ss_pred CeEEEEeCCCeEEEEeCCCCCCC--------------------------CceeccceeecCCCCCEeeeEEeCCCCCEEE
Confidence 9999999999999999821000 001233556779999999999999 678999
Q ss_pred EEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC---CEEEEEeCCCeEEEEcCC--CceeeEeeccc
Q 003423 273 SVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGSD--GKQLKMIKEHI 347 (821)
Q Consensus 273 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~---~~l~s~~~dg~i~iwd~~--~~~~~~~~~h~ 347 (821)
+++.|+.|++||+++... ...+ ..+..|...|.+++|++ ..+++++.||+|++||+. ++.+..+..|.
T Consensus 249 s~~~dg~i~i~d~~~~~~-----~~~~--~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~ 321 (430)
T 2xyi_A 249 SVADDQKLMIWDTRNNNT-----SKPS--HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 321 (430)
T ss_dssp EEETTSEEEEEETTCSCS-----SSCS--EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCS
T ss_pred EEeCCCeEEEEECCCCCC-----Ccce--eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCC
Confidence 999999999999998632 1112 46678999999999983 479999999999999993 56788899898
Q ss_pred CCCeEEEEEecCCC-EEEEEeCCCcEEEEEcCCc-CCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEE
Q 003423 348 GRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCL 425 (821)
Q Consensus 348 ~~~i~~l~~~~~~~-~l~tg~~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 425 (821)
. .|++++|+|+++ +|++++.||.|++||+... ..+..... .............|...|+++
T Consensus 322 ~-~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----------------~~~~~~~~~~~~~h~~~v~~~ 384 (430)
T 2xyi_A 322 D-EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA----------------EDGPPELLFIHGGHTAKISDF 384 (430)
T ss_dssp S-CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHH----------------HHCCTTEEEECCCCSSCEEEE
T ss_pred C-CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcccc----------------ccCCcceEEEcCCCCCCceEE
Confidence 8 699999999984 7999999999999999541 11100000 000012233445667789999
Q ss_pred EeecCCe-EEE-EecCCcEEEEEe
Q 003423 426 HLTSEDT-LYI-ATNHGYLYHTKL 447 (821)
Q Consensus 426 ~f~~~~~-~l~-~~~~g~~~~~~i 447 (821)
+|+|++. +++ ++.+|.+..+++
T Consensus 385 ~~~p~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 385 SWNPNEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp EECSSSTTEEEEEETTSEEEEEEE
T ss_pred EECCCCCCEEEEEECCCCEEEeEc
Confidence 9999986 544 455666765554
No 127
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=8.5e-23 Score=223.88 Aligned_cols=241 Identities=13% Similarity=0.066 Sum_probs=183.8
Q ss_pred eeEEEEEeccCCCCCCcceE-Eeec-CCeEEEEECC--CCeeeeEEEee-ccccEEeEEeccccCCCCCCccceeeEEEE
Q 003423 19 EISALCFVHLPSHLSSLPFL-LAGS-GSQVLLYDLE--AGTLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (821)
Q Consensus 19 ~Vt~l~~~~~p~~~~~~~~l-~~g~-~~~i~iwd~~--t~~~~~~~~~~-~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~ 93 (821)
+|++++|+ |+ +++| ++|. |+.|+|||+. +++.+..+..+ ....|.+++|+|++ ..++++
T Consensus 104 ~v~~~~~s--~d----~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~----------~~l~~~ 167 (450)
T 2vdu_B 104 YIRNLRLT--SD----ESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD----------TTVIIA 167 (450)
T ss_dssp CEEEEEEC--TT----SSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS----------SEEEEE
T ss_pred ceEEEEEc--CC----CCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC----------CEEEEE
Confidence 59999999 98 5664 6664 8999999999 88888888743 34579999999763 245556
Q ss_pred EcCCeEEEEEEeecCCCCCCCCCccccccc-eeeeccCCCCcEEEEEEeecCCC---CCEEEEEECCCcEEEEEccCCce
Q 003423 94 FGEKRVKLFELNFELSPNSQYQPETCVNLS-LVQSLPRLSHWVFDVCFLKVCNG---NRSLAIGCSDNSIRVWDISNSSI 169 (821)
Q Consensus 94 ~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~I~~~~~~~~~~~---~~~l~t~~~d~~i~iwd~~~~~~ 169 (821)
..++.+++|++..... .. ....+.+|.+.|++++|+| + +++|++|+.|+.|++||+.+++.
T Consensus 168 ~~~g~v~~~~~~~~~~------------~~~~~~~~~~h~~~v~~~~~sp---~~~~~~~l~s~~~d~~i~vwd~~~~~~ 232 (450)
T 2vdu_B 168 DKFGDVYSIDINSIPE------------EKFTQEPILGHVSMLTDVHLIK---DSDGHQFIITSDRDEHIKISHYPQCFI 232 (450)
T ss_dssp ETTSEEEEEETTSCCC------------SSCCCCCSEECSSCEEEEEEEE---CTTSCEEEEEEETTSCEEEEEESCTTC
T ss_pred eCCCcEEEEecCCccc------------ccccceeeecccCceEEEEEcC---CCCCCcEEEEEcCCCcEEEEECCCCce
Confidence 6689999999875431 11 3446778999999999999 8 89999999999999999999988
Q ss_pred eEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeE
Q 003423 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (821)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (821)
+..+...+...+.+++| + ++.+|++|+.|+.|++||+.+ .+.+
T Consensus 233 ~~~~~~~h~~~v~~~~~---s-d~~~l~s~~~d~~v~vwd~~~---------------------------------~~~~ 275 (450)
T 2vdu_B 233 VDKWLFGHKHFVSSICC---G-KDYLLLSAGGDDKIFAWDWKT---------------------------------GKNL 275 (450)
T ss_dssp EEEECCCCSSCEEEEEE---C-STTEEEEEESSSEEEEEETTT---------------------------------CCEE
T ss_pred eeeeecCCCCceEEEEE---C-CCCEEEEEeCCCeEEEEECCC---------------------------------CcEe
Confidence 87755444556778887 5 889999999999999999982 2222
Q ss_pred EEEe-------------------------cCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEec--ccCcccCCCCceeeec
Q 003423 250 FRLV-------------------------GHEGSIFRIEWSSCGSKLVSVS-DDRSARIWEV--RAEYWKDSDSIEEVGS 301 (821)
Q Consensus 250 ~~~~-------------------------~h~~~I~~l~~s~~~~~l~s~s-~Dg~i~iwd~--~~~~~~~~~~~~~~~~ 301 (821)
..+. .+...|.+++|+|++++|++++ .|+.|++|++ ..+.. ...+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~-----l~~~-- 348 (450)
T 2vdu_B 276 STFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGD-----LALK-- 348 (450)
T ss_dssp EEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTC-----EEEE--
T ss_pred eeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCc-----eeec--
Confidence 2222 3456799999999999999998 8999999999 44322 2333
Q ss_pred eEEeccceeEEEEEEcCC-EEEEEeC-------CCeEEEEcC
Q 003423 302 SVLYGHNARVWDCCLTDS-FIITAGE-------DCTCRVWGS 335 (821)
Q Consensus 302 ~~~~~h~~~i~~v~~~~~-~l~s~~~-------dg~i~iwd~ 335 (821)
..+.+| ..|++++|+++ .+++.+. +..|.+|.+
T Consensus 349 ~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 349 QIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp EEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred cEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEE
Confidence 456667 88999999964 4444432 445777766
No 128
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.92 E-value=3e-22 Score=215.37 Aligned_cols=261 Identities=8% Similarity=0.026 Sum_probs=199.6
Q ss_pred CCCCCCcceeecccee------eeeeEEEEEeccCCCCCCcceE-Eee-cCCeEEEEECCCCeeeeEEEeeccccEEeEE
Q 003423 1 MGKKDLSEWRLDVGQY------LGEISALCFVHLPSHLSSLPFL-LAG-SGSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (821)
Q Consensus 1 ~~~~~i~~w~~~~~~~------~~~Vt~l~~~~~p~~~~~~~~l-~~g-~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~ 72 (821)
+.|++|++||+.+++. ...+.+++|+ |+ +++| +++ .++.|++||+.+++.+..+..+. .+.+++
T Consensus 9 ~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s--~d----g~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~--~v~~~~ 80 (391)
T 1l0q_A 9 SESDNISVIDVTSNKVTATIPVGSNPMGAVIS--PD----GTKVYVANAHSNDVSIIDTATNNVIATVPAGS--SPQGVA 80 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECSSSEEEEEEC--TT----SSEEEEEEGGGTEEEEEETTTTEEEEEEECSS--SEEEEE
T ss_pred CCCCEEEEEECCCCeEEEEeecCCCcceEEEC--CC----CCEEEEECCCCCeEEEEECCCCeEEEEEECCC--CccceE
Confidence 3578999999998872 3458899999 98 5554 555 48999999999999998887644 699999
Q ss_pred eccccCCCCCCccceeeEEEEE-cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEE-
Q 003423 73 CNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL- 150 (821)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~l~~~-g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l- 150 (821)
|+|++ ..++++. .++.|++||+..+ +....+..| ..+.+++|+| +++.|
T Consensus 81 ~spdg----------~~l~~~~~~~~~v~v~d~~~~---------------~~~~~~~~~-~~~~~~~~s~---dg~~l~ 131 (391)
T 1l0q_A 81 VSPDG----------KQVYVTNMASSTLSVIDTTSN---------------TVAGTVKTG-KSPLGLALSP---DGKKLY 131 (391)
T ss_dssp ECTTS----------SEEEEEETTTTEEEEEETTTT---------------EEEEEEECS-SSEEEEEECT---TSSEEE
T ss_pred ECCCC----------CEEEEEECCCCEEEEEECCCC---------------eEEEEEeCC-CCcceEEECC---CCCEEE
Confidence 99663 2344444 3599999998743 344445444 4689999999 99877
Q ss_pred EEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEE-EEEeeCCEEEEEEcccCCcccCCCCCCCcccCC
Q 003423 151 AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRI-ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (821)
Q Consensus 151 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 229 (821)
++++.|+.|++||+.+++.+..+..+.. ...+.+ ++++..+ ++++.++.|++||+.
T Consensus 132 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~---~~dg~~l~~~~~~~~~v~~~d~~------------------ 188 (391)
T 1l0q_A 132 VTNNGDKTVSVINTVTKAVINTVSVGRS--PKGIAV---TPDGTKVYVANFDSMSISVIDTV------------------ 188 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCSS--EEEEEE---CTTSSEEEEEETTTTEEEEEETT------------------
T ss_pred EEeCCCCEEEEEECCCCcEEEEEecCCC--cceEEE---CCCCCEEEEEeCCCCEEEEEECC------------------
Confidence 6778899999999999988887766543 355555 5677666 677889999999998
Q ss_pred CCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEe---CCCeEEEEecccCcccCCCCceeeeceEEec
Q 003423 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS---DDRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (821)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s---~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 306 (821)
..+....+. |...+.+++|+|++++|++++ .|+.|++||+.+++. . ..+..
T Consensus 189 ---------------~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~-----~-----~~~~~ 242 (391)
T 1l0q_A 189 ---------------TNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI-----T-----ARIPV 242 (391)
T ss_dssp ---------------TTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE-----E-----EEEEC
T ss_pred ---------------CCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE-----E-----EEEec
Confidence 444555544 567899999999999998887 689999999988654 2 24444
Q ss_pred cceeEEEEEEc--CCEE-EEEeCCCeEEEEcC-CCceeeEeecccC
Q 003423 307 HNARVWDCCLT--DSFI-ITAGEDCTCRVWGS-DGKQLKMIKEHIG 348 (821)
Q Consensus 307 h~~~i~~v~~~--~~~l-~s~~~dg~i~iwd~-~~~~~~~~~~h~~ 348 (821)
|. .+.+++|+ ++++ ++++.|+.+++||+ +++.+..+..+..
T Consensus 243 ~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~ 287 (391)
T 1l0q_A 243 GP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKN 287 (391)
T ss_dssp CS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred CC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcC
Confidence 44 47889998 4556 67789999999999 6777777766543
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.90 E-value=1.2e-21 Score=211.48 Aligned_cols=302 Identities=9% Similarity=0.054 Sum_probs=212.4
Q ss_pred eeEEEEEeccCCCCCCcceEEeec-----CC----eEEEEEC--CCCeeee--EEEeeccccEEeEEeccc--------c
Q 003423 19 EISALCFVHLPSHLSSLPFLLAGS-----GS----QVLLYDL--EAGTLIR--PFQVFHGIRLHGISCNFI--------N 77 (821)
Q Consensus 19 ~Vt~l~~~~~p~~~~~~~~l~~g~-----~~----~i~iwd~--~t~~~~~--~~~~~~~~~i~~i~~~~~--------~ 77 (821)
+|...+|. +. +.+++++|. +| .|++||+ .+++.+. .+..+.. .+..+.+++. +
T Consensus 64 ~~~~~~w~--~~---g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~g 137 (415)
T 2hqs_A 64 EVQPAAWS--AL---GIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQ-WLRYAGHTASDEVFEKLTG 137 (415)
T ss_dssp GCCHHHHH--TT---TCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGG-GHHHHHHHHHHHHHHHHHS
T ss_pred CcCHHHHH--hc---CCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChh-HHHHHHHHHHHHHHHHHcC
Confidence 34445555 54 345676653 57 8999999 9998773 3555433 3544444421 0
Q ss_pred CCCCCCccceeeEEEEEcC------CeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEE
Q 003423 78 CTEGSVSTRVTFEVALFGE------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (821)
Q Consensus 78 ~~~~~~~~~~~~~l~~~g~------~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~ 151 (821)
..+..+ ..++.+..+ +.|++||++.. ....+.+|.+.|.+++|+| +|+.||
T Consensus 138 -~~~~~~---~~l~~~s~~~~~~~~~~i~i~d~~g~----------------~~~~l~~~~~~v~~~~~Sp---dg~~la 194 (415)
T 2hqs_A 138 -IKGAFR---TRIAYVVQTNGGQFPYELRVSDYDGY----------------NQFVVHRSPQPLMSPAWSP---DGSKLA 194 (415)
T ss_dssp -SCCCTT---CEEEEEEECSSSSCCEEEEEEETTSC----------------SCEEEEEESSCEEEEEECT---TSSEEE
T ss_pred -CCCcCC---CEEEEEEecCCCCccceEEEEcCCCC----------------CCEEEeCCCCcceeeEEcC---CCCEEE
Confidence 000111 234444443 79999998632 2456677889999999999 999999
Q ss_pred EEECCC---cEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEE-EEeeCC--EEEEEEcccCCcccCCCCCCCc
Q 003423 152 IGCSDN---SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTIYN--EIIVWKVDWEHVAPLLNSPEGN 225 (821)
Q Consensus 152 t~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~-sg~~dg--~i~vwd~~~~~~~~~~~~~~~~ 225 (821)
+++.++ .|++||+.+++... +..+. ..+.+++| +|++..|+ +++.++ .|++||+.
T Consensus 195 ~~s~~~~~~~i~~~d~~tg~~~~-l~~~~-~~~~~~~~---spdg~~la~~~~~~g~~~i~~~d~~-------------- 255 (415)
T 2hqs_A 195 YVTFESGRSALVIQTLANGAVRQ-VASFP-RHNGAPAF---SPDGSKLAFALSKTGSLNLYVMDLA-------------- 255 (415)
T ss_dssp EEECTTSSCEEEEEETTTCCEEE-EECCS-SCEEEEEE---CTTSSEEEEEECTTSSCEEEEEETT--------------
T ss_pred EEEecCCCcEEEEEECCCCcEEE-eecCC-CcccCEEE---cCCCCEEEEEEecCCCceEEEEECC--------------
Confidence 999875 99999999887653 43333 24566666 68888777 666555 48999987
Q ss_pred ccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeC-CC--eEEEEecccCcccCCCCceeeece
Q 003423 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DR--SARIWEVRAEYWKDSDSIEEVGSS 302 (821)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~-Dg--~i~iwd~~~~~~~~~~~~~~~~~~ 302 (821)
..+ ...+..|...+.+++|+|||++|++++. ++ .|.+||+.+++. .
T Consensus 256 -------------------~~~-~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-----------~ 304 (415)
T 2hqs_A 256 -------------------SGQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-----------Q 304 (415)
T ss_dssp -------------------TCC-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-----------E
T ss_pred -------------------CCC-EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-----------E
Confidence 333 2466788999999999999999988876 45 677778877654 3
Q ss_pred EEeccceeEEEEEEc--CCEEEEEeCC---CeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEeCCC---cEEE
Q 003423 303 VLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS---AIKV 374 (821)
Q Consensus 303 ~~~~h~~~i~~v~~~--~~~l~s~~~d---g~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg---~I~i 374 (821)
.+..|...+.+++|+ +++|++++.+ ..|.+||+++.....+..+. .+.+++|+|+|++|++++.++ .|.+
T Consensus 305 ~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~--~~~~~~~spdg~~l~~~s~~~~~~~l~~ 382 (415)
T 2hqs_A 305 RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF--LDETPSLAPNGTMVIYSSSQGMGSVLNL 382 (415)
T ss_dssp ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS--SCEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC--CcCCeEEcCCCCEEEEEEcCCCccEEEE
Confidence 555677788999998 4778877764 58999999554445666554 589999999999999988877 7999
Q ss_pred EEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCC
Q 003423 375 HQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED 431 (821)
Q Consensus 375 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~ 431 (821)
||+++.....+ ..+...|++++|+|..
T Consensus 383 ~d~~g~~~~~l------------------------------~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 383 VSTDGRFKARL------------------------------PATDGQVKFPAWSPYL 409 (415)
T ss_dssp EETTSCCEEEC------------------------------CCSSSEEEEEEECCCC
T ss_pred EECCCCcEEEe------------------------------eCCCCCCcCCcccccc
Confidence 99865433332 2335668999999864
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.88 E-value=1.1e-19 Score=202.07 Aligned_cols=338 Identities=10% Similarity=0.034 Sum_probs=226.6
Q ss_pred EeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEE
Q 003423 25 FVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFE 103 (821)
Q Consensus 25 ~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~ 103 (821)
|+ |+ +.+++++. +++|.+||..+++++.++.... .+|++.++|++ .+++++..++.|++||
T Consensus 145 ~~--p~----~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~--~~~~v~~spdg----------~~l~v~~~d~~V~v~D 206 (543)
T 1nir_A 145 LD--LP----NLFSVTLRDAGQIALVDGDSKKIVKVIDTGY--AVHISRMSASG----------RYLLVIGRDARIDMID 206 (543)
T ss_dssp CC--GG----GEEEEEEGGGTEEEEEETTTCCEEEEEECST--TEEEEEECTTS----------CEEEEEETTSEEEEEE
T ss_pred cC--CC----CEEEEEEcCCCeEEEEECCCceEEEEEecCc--ccceEEECCCC----------CEEEEECCCCeEEEEE
Confidence 66 76 56666665 7999999999999999988543 38999999764 3566677789999999
Q ss_pred EeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCC-CCCEEEEEE-CCCcEEEEEccCCceeEEEccC-----
Q 003423 104 LNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN-GNRSLAIGC-SDNSIRVWDISNSSIILEVHSP----- 176 (821)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~-~~~~l~t~~-~d~~i~iwd~~~~~~~~~~~~~----- 176 (821)
+.... ++.+..+. +...+..++|+|... +|++|++++ .+++|.+||..+++.+..+..+
T Consensus 207 ~~~~t-------------~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~ 272 (543)
T 1nir_A 207 LWAKE-------------PTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVD 272 (543)
T ss_dssp TTSSS-------------CEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSS
T ss_pred CcCCC-------------CcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccC
Confidence 83111 34566666 345689999986111 678888887 4899999999999988877642
Q ss_pred -----cceeEEEEeeccCCc-cCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEE
Q 003423 177 -----ERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (821)
Q Consensus 177 -----~~~~~~s~~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (821)
....+.++.+ ++ ...++++...++.|.+||.... ....+.
T Consensus 273 ~~~~~~~~~v~~i~~---s~~~~~~~vs~~~~g~i~vvd~~~~-------------------------------~~l~~~ 318 (543)
T 1nir_A 273 TQTYHPEPRVAAIIA---SHEHPEFIVNVKETGKVLLVNYKDI-------------------------------DNLTVT 318 (543)
T ss_dssp SCCEESCCCEEEEEE---CSSSSEEEEEETTTTEEEEEECTTS-------------------------------SSCEEE
T ss_pred ccccccCCceEEEEE---CCCCCEEEEEECCCCeEEEEEecCC-------------------------------CcceeE
Confidence 1223445555 34 4567778888999999998711 011122
Q ss_pred EEecCCCcEEEEEEcCCCCEEEE-EeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEe-C
Q 003423 251 RLVGHEGSIFRIEWSSCGSKLVS-VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG-E 326 (821)
Q Consensus 251 ~~~~h~~~I~~l~~s~~~~~l~s-~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~-~ 326 (821)
.+ .+...+.+++|+|+|++|++ +..+++|.+||..+++. ...+.. ....|..+...+... +..++++. .
T Consensus 319 ~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l-----~~~i~~-g~~ph~g~g~~~~~p~~g~~~~s~~~~ 391 (543)
T 1nir_A 319 SI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL-----SALVDV-GKTPHPGRGANFVHPKYGPVWSTSHLG 391 (543)
T ss_dssp EE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE-----EEEEEC-SSSBCCTTCEEEEETTTEEEEEEEBSS
T ss_pred Ee-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeE-----EEeecc-CCCCCCCCCcccCCCCCccEEEeccCC
Confidence 33 36667889999999997654 55689999999998765 321100 011255443333222 24556665 5
Q ss_pred CCeEEEEcC-C-------CceeeEeecccCCCeEEEEEecCCCEEEEEe-------CCCcEEEEEcCCcCCCcccCCccc
Q 003423 327 DCTCRVWGS-D-------GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG-------FDSAIKVHQFQAFLPGSLESHPEA 391 (821)
Q Consensus 327 dg~i~iwd~-~-------~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~-------~dg~I~iwd~~~~~~~~~~~~~~~ 391 (821)
|++|.+||. . +++++++..|.+ .+..++++|++++|+++. .+++|.+||+.+....
T Consensus 392 d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~-~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~-------- 462 (543)
T 1nir_A 392 DGSISLIGTDPKNHPQYAWKKVAELQGQGG-GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK-------- 462 (543)
T ss_dssp SSEEEEEECCTTTCTTTBTSEEEEEECSCS-CCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC--------
T ss_pred CceEEEEEeCCCCCchhcCeEEEEEEcCCC-CceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC--------
Confidence 899999999 4 688999999877 578999999999999987 2779999999652110
Q ss_pred cccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEec-C--CcEEEEEecCCCcceee
Q 003423 392 KEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN-H--GYLYHTKLCDMDSVNWN 456 (821)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~-~--g~~~~~~i~~~~~~~~~ 456 (821)
.+.+.+. ...-+..+...+..++|+++|..+..+. + .....+.+++..+.+..
T Consensus 463 ------~~~~~v~------~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 463 ------YQVLPIA------EWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp ------CEEECHH------HHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred ------eEEeech------hhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 0000000 0000112245689999999997766552 1 11223346676665533
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.85 E-value=9.5e-19 Score=194.51 Aligned_cols=333 Identities=10% Similarity=-0.019 Sum_probs=214.6
Q ss_pred EEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEc--ccCCcc
Q 003423 139 CFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV--DWEHVA 216 (821)
Q Consensus 139 ~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~--~~~~~~ 216 (821)
+|+| ++.++++++.|++|.+||..+++++.++..+.. ++.+.+ ++++.+|++++.|+.|.+||+ .
T Consensus 144 ~~~p---~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~---spdg~~l~v~~~d~~V~v~D~~~~----- 210 (543)
T 1nir_A 144 DLDL---PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRM---SASGRYLLVIGRDARIDMIDLWAK----- 210 (543)
T ss_dssp CCCG---GGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEE---CTTSCEEEEEETTSEEEEEETTSS-----
T ss_pred ccCC---CCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEE---CCCCCEEEEECCCCeEEEEECcCC-----
Confidence 3778 888999999999999999999999988875443 556666 789999999999999999999 5
Q ss_pred cCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcC----CCCEEEEEe-CCCeEEEEecccCccc
Q 003423 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS----CGSKLVSVS-DDRSARIWEVRAEYWK 291 (821)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~----~~~~l~s~s-~Dg~i~iwd~~~~~~~ 291 (821)
+.+.+.++. +...+.+++|+| +|++|++++ .+++|.+||..+.+.
T Consensus 211 ----------------------------t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~- 260 (543)
T 1nir_A 211 ----------------------------EPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP- 260 (543)
T ss_dssp ----------------------------SCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE-
T ss_pred ----------------------------CCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc-
Confidence 456666776 455689999999 999998887 489999999988765
Q ss_pred CCCCceeeeceEE-----eccc-eeEEEEEEcC---CEEEEEeCCCeEEEEcC-CCceee--EeecccCCCeEEEEEecC
Q 003423 292 DSDSIEEVGSSVL-----YGHN-ARVWDCCLTD---SFIITAGEDCTCRVWGS-DGKQLK--MIKEHIGRGIWRCLYDSL 359 (821)
Q Consensus 292 ~~~~~~~~~~~~~-----~~h~-~~i~~v~~~~---~~l~s~~~dg~i~iwd~-~~~~~~--~~~~h~~~~i~~l~~~~~ 359 (821)
.+.+..... ..|. .++.++.+++ .++++...++.|.+||+ +++.+. .+. +.. .+..++|+|+
T Consensus 261 ----~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~-~~~~~~~spd 334 (543)
T 1nir_A 261 ----KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAP-FLHDGGWDSS 334 (543)
T ss_dssp ----EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCS-SCCCEEECTT
T ss_pred ----ceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCc-CccCceECCC
Confidence 332210000 0032 3788999983 57788889999999999 444333 333 333 5889999999
Q ss_pred CCEEEEEe-CCCcEEEEEcCCc-CCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecC-CeEEEE
Q 003423 360 SSLLVTAG-FDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSE-DTLYIA 436 (821)
Q Consensus 360 ~~~l~tg~-~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~-~~~l~~ 436 (821)
++++++++ .+++|.+||..+. +..++.. .. ..|......+ ++|+ +.++++
T Consensus 335 g~~l~va~~~~~~v~v~D~~tg~l~~~i~~------------------g~--------~ph~g~g~~~-~~p~~g~~~~s 387 (543)
T 1nir_A 335 HRYFMTAANNSNKVAVIDSKDRRLSALVDV------------------GK--------TPHPGRGANF-VHPKYGPVWST 387 (543)
T ss_dssp SCEEEEEEGGGTEEEEEETTTTEEEEEEEC------------------SS--------SBCCTTCEEE-EETTTEEEEEE
T ss_pred CCEEEEEecCCCeEEEEECCCCeEEEeecc------------------CC--------CCCCCCCccc-CCCCCccEEEe
Confidence 99876654 6899999999542 1211110 00 0122222222 4666 566665
Q ss_pred ec--CCcEEEEEecCCC--cceeeEeeeccC-CcceEEEeccCCCCCCCCCCCcEEEEec-------CCccEEEEEecCC
Q 003423 437 TN--HGYLYHTKLCDMD--SVNWNKILQVSE-GMPIICMDLLSNEPKYPCGIDDWVALGD-------GKGNMTIVRVVGD 504 (821)
Q Consensus 437 ~~--~g~~~~~~i~~~~--~~~~~~~~~~~~-~~~i~~~~~~~~~~~~s~~~~~~l~~g~-------~~g~i~i~~~~~~ 504 (821)
.. ++.+..+...... ...|+.+..... ......+.+ .|++++|.+++ .+++|.+||+.+.
T Consensus 388 ~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~--------~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 388 SHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKT--------HPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEEC--------CTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred ccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEc--------CCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 53 3555544433211 011333332221 122223333 35678999887 2679999999876
Q ss_pred CCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEE-----CCCCcEEEeeecCC
Q 003423 505 VHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTA-----DPKGRLKLWQLCDP 555 (821)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~~ 555 (821)
.........-.|..-...........++++|+.|.++ +.++.|.|||..+.
T Consensus 460 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~ 515 (543)
T 1nir_A 460 DAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL 515 (543)
T ss_dssp TSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCc
Confidence 6431110000010001112233345688988888765 34799999999887
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.85 E-value=1.1e-19 Score=195.92 Aligned_cols=243 Identities=12% Similarity=-0.003 Sum_probs=179.9
Q ss_pred cceEEeecC------CeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcC---CeEEEEEEe
Q 003423 35 LPFLLAGSG------SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE---KRVKLFELN 105 (821)
Q Consensus 35 ~~~l~~g~~------~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~---~~v~i~~~~ 105 (821)
.+++.++.+ +.|++||++. ..+..+..+.. .+.+++|+|++ ..++.+..+ ..|++||+.
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~-~v~~~~~Spdg----------~~la~~s~~~~~~~i~~~d~~ 211 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQ-PLMSPAWSPDG----------SKLAYVTFESGRSALVIQTLA 211 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESS-CEEEEEECTTS----------SEEEEEECTTSSCEEEEEETT
T ss_pred CEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCC-cceeeEEcCCC----------CEEEEEEecCCCcEEEEEECC
Confidence 345555553 7999999975 44566665544 79999999764 234444444 499999987
Q ss_pred ecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEE-EEECCCc--EEEEEccCCceeEEEccCcceeEE
Q 003423 106 FELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDNS--IRVWDISNSSIILEVHSPERCLLY 182 (821)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~-t~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~ 182 (821)
.+. ...+..|...+.+++|+| +|+.|+ +++.++. |.+||+.+++. ..+..+. ..+.
T Consensus 212 tg~----------------~~~l~~~~~~~~~~~~sp---dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~ 270 (415)
T 2hqs_A 212 NGA----------------VRQVASFPRHNGAPAFSP---DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGR-SNNT 270 (415)
T ss_dssp TCC----------------EEEEECCSSCEEEEEECT---TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCS-SCEE
T ss_pred CCc----------------EEEeecCCCcccCEEEcC---CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCC-Cccc
Confidence 542 234667888999999999 999888 6666554 99999988765 4444443 3456
Q ss_pred EEeeccCCccCeEEEEEee-CC--EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcE
Q 003423 183 SMKLWGDNLEALRIASGTI-YN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSI 259 (821)
Q Consensus 183 s~~~~~~s~~~~~l~sg~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 259 (821)
++.| +|++..|+.++. ++ .|.+||+. ... ...+..|...+
T Consensus 271 ~~~~---spdg~~l~~~s~~~g~~~i~~~d~~---------------------------------~~~-~~~l~~~~~~~ 313 (415)
T 2hqs_A 271 EPTW---FPDSQNLAFTSDQAGRPQVYKVNIN---------------------------------GGA-PQRITWEGSQN 313 (415)
T ss_dssp EEEE---CTTSSEEEEEECTTSSCEEEEEETT---------------------------------SSC-CEECCCSSSEE
T ss_pred ceEE---CCCCCEEEEEECCCCCcEEEEEECC---------------------------------CCC-EEEEecCCCcc
Confidence 6666 689998888776 45 67777876 222 23345677889
Q ss_pred EEEEEcCCCCEEEEEeCC---CeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCC---eEE
Q 003423 260 FRIEWSSCGSKLVSVSDD---RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC---TCR 331 (821)
Q Consensus 260 ~~l~~s~~~~~l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg---~i~ 331 (821)
.+++|+|+|++|++++.+ ..|++||+.+++. ..+..|. .+.+++|+ +.+|++++.++ .|.
T Consensus 314 ~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-----------~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~ 381 (415)
T 2hqs_A 314 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-----------QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLN 381 (415)
T ss_dssp EEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-----------EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred cCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-----------EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEE
Confidence 999999999999888764 5899999988754 3455554 78999998 47788888777 899
Q ss_pred EEcCCCceeeEeecccCCCeEEEEEecCC
Q 003423 332 VWGSDGKQLKMIKEHIGRGIWRCLYDSLS 360 (821)
Q Consensus 332 iwd~~~~~~~~~~~h~~~~i~~l~~~~~~ 360 (821)
+||++++....+..|.+ .|++++|+|..
T Consensus 382 ~~d~~g~~~~~l~~~~~-~v~~~~~~~~~ 409 (415)
T 2hqs_A 382 LVSTDGRFKARLPATDG-QVKFPAWSPYL 409 (415)
T ss_dssp EEETTSCCEEECCCSSS-EEEEEEECCCC
T ss_pred EEECCCCcEEEeeCCCC-CCcCCcccccc
Confidence 99999988999999988 59999999964
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.84 E-value=6.1e-19 Score=206.60 Aligned_cols=279 Identities=10% Similarity=0.004 Sum_probs=196.0
Q ss_pred eeeeEEEEEeccCCCCCCcceEEee-c-CC-----eEEEEECCCCeeeeEEEeecc-----------------------c
Q 003423 17 LGEISALCFVHLPSHLSSLPFLLAG-S-GS-----QVLLYDLEAGTLIRPFQVFHG-----------------------I 66 (821)
Q Consensus 17 ~~~Vt~l~~~~~p~~~~~~~~l~~g-~-~~-----~i~iwd~~t~~~~~~~~~~~~-----------------------~ 66 (821)
...|++++|+ || +++|+++ . ++ .|++||+.+++....+..... .
T Consensus 36 ~~~~~~~~~S--pd----G~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (741)
T 2ecf_A 36 GPTLMKPKVA--PD----GSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMT 109 (741)
T ss_dssp CCCCEEEEEC--TT----SSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCE
T ss_pred CCCCCCceEe--cC----CCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhcccc
Confidence 4569999999 99 5666654 4 66 899999999987666653221 2
Q ss_pred cEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCC
Q 003423 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (821)
Q Consensus 67 ~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~ 146 (821)
.|.+++|+|++ ..++...++.|.+|++..+.. .....+..|...+.+++|+| +
T Consensus 110 ~v~~~~~SpDg-----------~~l~~~~~~~i~~~d~~~~~~-------------~~~~~l~~~~~~~~~~~~SP---D 162 (741)
T 2ecf_A 110 GIVDYQWSPDA-----------QRLLFPLGGELYLYDLKQEGK-------------AAVRQLTHGEGFATDAKLSP---K 162 (741)
T ss_dssp ESCCCEECTTS-----------SEEEEEETTEEEEEESSSCST-------------TSCCBCCCSSSCEEEEEECT---T
T ss_pred CcceeEECCCC-----------CEEEEEeCCcEEEEECCCCCc-------------ceEEEcccCCcccccccCCC---C
Confidence 37788888663 366666669999999875410 02345667788899999999 9
Q ss_pred CCEEEEEECCCcEEEEEccCCceeEEEccCccee---------------EEEEeeccCCccCeEEEEEeeCC--------
Q 003423 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL---------------LYSMKLWGDNLEALRIASGTIYN-------- 203 (821)
Q Consensus 147 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------------~~s~~~~~~s~~~~~l~sg~~dg-------- 203 (821)
|++||.++ ++.|.+||+.+++.......+...+ ..++.| +||+..|+.++.|+
T Consensus 163 G~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~---SpDg~~l~~~~~d~~~~~~~~~ 238 (741)
T 2ecf_A 163 GGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWW---APDDSAIAYARIDESPVPVQKR 238 (741)
T ss_dssp SSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEE---CTTSSCEEEEEEECTTSCEEEE
T ss_pred CCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEE---CCCCCEEEEEEEcCCCCceEec
Confidence 99999887 5689999999877654333322211 123333 68999999987765
Q ss_pred -------------------------EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccc-eeeEEEEe--cC
Q 003423 204 -------------------------EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT-AVNLFRLV--GH 255 (821)
Q Consensus 204 -------------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~h 255 (821)
.|.+||+. . .+...... .|
T Consensus 239 ~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~---------------------------------~~~~~~~~~~~~~~ 285 (741)
T 2ecf_A 239 YEVYADRTDVIEQRYPAAGDANVQVKLGVISPA---------------------------------EQAQTQWIDLGKEQ 285 (741)
T ss_dssp EEECSSCEEEEEEECCBTTSCCCEEEEEEECSS---------------------------------TTCCCEEECCCSCS
T ss_pred CCCCCCcccceEeecCCCCCCCCeeEEEEEECC---------------------------------CCCceEEecCCCCc
Confidence 56666665 2 22222221 47
Q ss_pred CCcEEEEEEcCCCCEEEEEeC-----CCeEEEEecccCcccCCCCceeeeceEEeccce----eEEEEEEc--CCEEEEE
Q 003423 256 EGSIFRIEWSSCGSKLVSVSD-----DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA----RVWDCCLT--DSFIITA 324 (821)
Q Consensus 256 ~~~I~~l~~s~~~~~l~s~s~-----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~----~i~~v~~~--~~~l~s~ 324 (821)
...+..++| |||++|+.++. +..|++||+.+++. . .....+.. .+.+++|+ +++++++
T Consensus 286 ~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~-----~-----~~~~~~~~~~~~~~~~~~~spdg~~~~~~ 354 (741)
T 2ecf_A 286 DIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ-----R-----VLAHETSPTWVPLHNSLRFLDDGSILWSS 354 (741)
T ss_dssp SEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE-----E-----EEEEEECSSCCCCCSCCEECTTSCEEEEE
T ss_pred ceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce-----E-----EEEEcCCCCcCCcCCceEECCCCeEEEEe
Confidence 888999999 99999987654 57899999988764 2 22333332 34578898 4688889
Q ss_pred eCCCeEEEEcC--CCceeeEeecccCCCeEEE-EEecCCCEEEE-EeCCC--cEEEEEcC
Q 003423 325 GEDCTCRVWGS--DGKQLKMIKEHIGRGIWRC-LYDSLSSLLVT-AGFDS--AIKVHQFQ 378 (821)
Q Consensus 325 ~~dg~i~iwd~--~~~~~~~~~~h~~~~i~~l-~~~~~~~~l~t-g~~dg--~I~iwd~~ 378 (821)
+.||.+++|.+ +++ ...+..+.. .+..+ .|+|+++.|+. ++.++ .+++|+++
T Consensus 355 ~~~g~~~l~~~~~~~~-~~~l~~~~~-~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 355 ERTGFQHLYRIDSKGK-AAALTHGNW-SVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp CTTSSCEEEEECSSSC-EEESCCSSS-CEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred cCCCccEEEEEcCCCC-eeeeeecce-EEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 99998888866 566 777777766 58777 59999987754 55555 89999884
No 134
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.83 E-value=3.9e-19 Score=207.68 Aligned_cols=324 Identities=9% Similarity=0.006 Sum_probs=202.7
Q ss_pred CcceeeccceeeeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeecc--ccEEeEEeccccCCCCCC
Q 003423 6 LSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHG--IRLHGISCNFINCTEGSV 83 (821)
Q Consensus 6 i~~w~~~~~~~~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~--~~i~~i~~~~~~~~~~~~ 83 (821)
+.+.++..+.....+.+++|+ || +++++++.++.|++||+.+++....+..+.. ..|.+++|+|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~s--pd----g~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg------ 72 (723)
T 1xfd_A 5 VTVEDLFSEDFKIHDPEAKWI--SD----TEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDR------ 72 (723)
T ss_dssp CCHHHHTCTTTCCCCCCCCBS--SS----SCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTS------
T ss_pred ccHHHHhCCCCcccccccEEc--CC----CcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCC------
Confidence 445555556655668899999 99 5688777789999999999988766654332 148899999764
Q ss_pred ccceeeEEEEEcC---------CeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEE
Q 003423 84 STRVTFEVALFGE---------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC 154 (821)
Q Consensus 84 ~~~~~~~l~~~g~---------~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~ 154 (821)
+ .++.+..+ +.+.+||+..+. ...+....+|...+..++|+| +|+.||.++
T Consensus 73 -~---~l~~~~~~~~~~~~~~~~~i~~~d~~~~~-------------~~~l~~~~~~~~~~~~~~~SP---dG~~la~~~ 132 (723)
T 1xfd_A 73 -E---YALFSYNVEPIYQHSYTGYYVLSKIPHGD-------------PQSLDPPEVSNAKLQYAGWGP---KGQQLIFIF 132 (723)
T ss_dssp -S---EEEEEESCCCCSSSCCCSEEEEEESSSCC-------------CEECCCTTCCSCCCSBCCBCS---STTCEEEEE
T ss_pred -C---EEEEEecCccceeecceeeEEEEECCCCc-------------eEeccCCccccccccccEECC---CCCEEEEEE
Confidence 2 34444432 788899987543 223344456667799999999 999999988
Q ss_pred CCCcEEEEEccCCceeEEEccCcceeE-----------------EEEeeccCCccCeEEEEEeeC-CEEEEEEcccCCcc
Q 003423 155 SDNSIRVWDISNSSIILEVHSPERCLL-----------------YSMKLWGDNLEALRIASGTIY-NEIIVWKVDWEHVA 216 (821)
Q Consensus 155 ~d~~i~iwd~~~~~~~~~~~~~~~~~~-----------------~s~~~~~~s~~~~~l~sg~~d-g~i~vwd~~~~~~~ 216 (821)
. +.|++||+.+++.......+...++ .++.| +||+..|+.++.+ +.+.+|++......
T Consensus 133 ~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~---SpDg~~la~~~~~~~~~~~~~~~~~~~~ 208 (723)
T 1xfd_A 133 E-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWW---SPDGTRLAYAAINDSRVPIMELPTYTGS 208 (723)
T ss_dssp T-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEE---CTTSSEEEEEEEECTTSCEEEECCCSSS
T ss_pred C-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEE---CCCCCEEEEEEECCCccceEEeeccCCc
Confidence 5 7999999998877655444332221 23444 6899999888765 45666665411110
Q ss_pred cCCCCCCCccc--CCCCCCcceeeecccccceeeEEEEecC------CCcEEEEEEcCCCCEEEEEeC----CCeEEEEe
Q 003423 217 PLLNSPEGNHA--HGSSSDFKCFKLQDQQHTAVNLFRLVGH------EGSIFRIEWSSCGSKLVSVSD----DRSARIWE 284 (821)
Q Consensus 217 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h------~~~I~~l~~s~~~~~l~s~s~----Dg~i~iwd 284 (821)
.... .....+ .+.......+.+++.. .......+..| ...+..++|+|||++|++.+. +..|++||
T Consensus 209 ~~~~-~~~~~~~~~G~~~~~~~l~~~d~~-~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d 286 (723)
T 1xfd_A 209 IYPT-VKPYHYPKAGSENPSISLHVIGLN-GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCD 286 (723)
T ss_dssp SSCC-CEEEECCBTTSCCCEEEEEEEESS-SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEE
T ss_pred CCCc-ceeccCCCCCCCCCeeEEEEEECC-CCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEe
Confidence 0000 000000 0110101122222211 22222334443 678999999999998877653 36899999
Q ss_pred cccCcccCCCCceeeeceEE-eccceeEE----EEEEc--CCEEEE--EeCCC------eEEEEc-CCCce---eeEeec
Q 003423 285 VRAEYWKDSDSIEEVGSSVL-YGHNARVW----DCCLT--DSFIIT--AGEDC------TCRVWG-SDGKQ---LKMIKE 345 (821)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~-~~h~~~i~----~v~~~--~~~l~s--~~~dg------~i~iwd-~~~~~---~~~~~~ 345 (821)
+.+++. . ... ..+...+. .++|+ ++.|+. ...++ .|.+|| .++.. ...+..
T Consensus 287 ~~~g~~-----~-----~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~ 356 (723)
T 1xfd_A 287 ATTGVC-----T-----KKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS 356 (723)
T ss_dssp TTTCCE-----E-----EEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC
T ss_pred CCCCcc-----e-----EEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec
Confidence 988754 2 122 22333333 67888 354543 55677 577788 44444 555554
Q ss_pred ccCCCeEE-EEEecCCCEEEEEeCC---CcEEEEEcC
Q 003423 346 HIGRGIWR-CLYDSLSSLLVTAGFD---SAIKVHQFQ 378 (821)
Q Consensus 346 h~~~~i~~-l~~~~~~~~l~tg~~d---g~I~iwd~~ 378 (821)
+.. .+.. ++|+|+++.|+..+.+ +.+++|+++
T Consensus 357 ~~~-~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 357 GDW-DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp SSS-CEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred CCe-EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence 333 3554 6999999999776655 789999985
No 135
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.80 E-value=1.4e-17 Score=193.93 Aligned_cols=293 Identities=10% Similarity=0.060 Sum_probs=191.0
Q ss_pred cceEEeecCCeEEEEECCCCeee-eEEEeecc----------------ccEEeEEeccccCCCCCCccceeeEEEEEcCC
Q 003423 35 LPFLLAGSGSQVLLYDLEAGTLI-RPFQVFHG----------------IRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (821)
Q Consensus 35 ~~~l~~g~~~~i~iwd~~t~~~~-~~~~~~~~----------------~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~ 97 (821)
..++..+.++ | +||+.+|+.+ ..+..+.. ..|.+++|+|+. .++...++
T Consensus 36 ~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~------------~~~~~~~~ 101 (706)
T 2z3z_A 36 DNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRG------------LVVLFTQG 101 (706)
T ss_dssp TEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTT------------EEEEEETT
T ss_pred CeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCC------------eEEEEECC
Confidence 3455555566 8 9999999874 44443321 358889998542 45555679
Q ss_pred eEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccC-----CceeEE
Q 003423 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN-----SSIILE 172 (821)
Q Consensus 98 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~-----~~~~~~ 172 (821)
.+++||+..+. ...+..+...+.+++|+| +|+.||.+ .++.|.+||+.+ ++....
T Consensus 102 ~i~~~d~~~~~----------------~~~l~~~~~~~~~~~~Sp---dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~ 161 (706)
T 2z3z_A 102 GLVGFDMLARK----------------VTYLFDTNEETASLDFSP---VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAV 161 (706)
T ss_dssp EEEEEETTTTE----------------EEEEECCTTCCTTCEECT---TSSEEEEE-ETTEEEEEECBCTTSCCCCCEES
T ss_pred EEEEEECCCCc----------------eEEccCCcccccCCcCCC---CCCEEEEE-ECCeEEEEecCcccccCCCcEEe
Confidence 99999986431 234445667789999999 99999985 689999999998 766543
Q ss_pred EccCccee-------------EEEEeeccCCccCeEEEEEee---------------------------------CCEEE
Q 003423 173 VHSPERCL-------------LYSMKLWGDNLEALRIASGTI---------------------------------YNEII 206 (821)
Q Consensus 173 ~~~~~~~~-------------~~s~~~~~~s~~~~~l~sg~~---------------------------------dg~i~ 206 (821)
...+...+ +.++.+ +||+.+|++++. ++.|.
T Consensus 162 ~~~~~~~~~~g~~~~~ee~~~~~~~~~---SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~ 238 (706)
T 2z3z_A 162 TIDGTETLVYGQAVHQREFGIEKGTFW---SPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG 238 (706)
T ss_dssp CSCCBTTEEESSCCGGGCTTCCCSEEE---CTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred ccCCCCCeEcccchhhhhcCCCceEEE---CCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence 33332211 123333 689999998873 35677
Q ss_pred EEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE--ecCCCcEEEEEEcCCCCEEEEEeCCC-----e
Q 003423 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL--VGHEGSIFRIEWSSCGSKLVSVSDDR-----S 279 (821)
Q Consensus 207 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~I~~l~~s~~~~~l~s~s~Dg-----~ 279 (821)
+||+. ........ ..|...+.+++|+|||++|++++.|+ .
T Consensus 239 ~~d~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 285 (706)
T 2z3z_A 239 IYHLA---------------------------------TGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECK 285 (706)
T ss_dssp EEETT---------------------------------TTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEE
T ss_pred EEECC---------------------------------CCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeE
Confidence 77776 22222211 25778899999999999999988776 9
Q ss_pred EEEEecccCcccCCCCceeeeceEEeccce---eEEEEEEcC----CEEEEEeCCCeEEEEcC--CCceeeEeecccCCC
Q 003423 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNA---RVWDCCLTD----SFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRG 350 (821)
Q Consensus 280 i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~---~i~~v~~~~----~~l~s~~~dg~i~iwd~--~~~~~~~~~~h~~~~ 350 (821)
|++||+.+++. ...+ ....+.. .+.+++|++ .+++++..|+.+++|.+ +++.+..+..+.. .
T Consensus 286 v~~~d~~~g~~-----~~~~---~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~-~ 356 (706)
T 2z3z_A 286 VNAYDAETGRF-----VRTL---FVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEW-E 356 (706)
T ss_dssp EEEEETTTCCE-----EEEE---EEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSS-C
T ss_pred EEEEECCCCce-----eeEE---EEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCe-E
Confidence 99999988732 2211 1112222 235677864 47888889999999987 5777788877766 5
Q ss_pred eEE-EEEecCCCEEEEEeCC-C----cEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEE
Q 003423 351 IWR-CLYDSLSSLLVTAGFD-S----AIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRC 424 (821)
Q Consensus 351 i~~-l~~~~~~~~l~tg~~d-g----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 424 (821)
+.. ++|+|+++.|+.++.+ + .|..||+.+.....+ .+...+.+
T Consensus 357 v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l-------------------------------~~~~~~~~ 405 (706)
T 2z3z_A 357 VTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDL-------------------------------TPESGMHR 405 (706)
T ss_dssp EEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEES-------------------------------CCSSSEEE
T ss_pred EEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceec-------------------------------cCCCceEE
Confidence 776 7999999887666554 3 444455433211111 02234788
Q ss_pred EEeecCCeEEEEe
Q 003423 425 LHLTSEDTLYIAT 437 (821)
Q Consensus 425 l~f~~~~~~l~~~ 437 (821)
++|+|+++.++.+
T Consensus 406 ~~~spdg~~l~~~ 418 (706)
T 2z3z_A 406 TQLSPDGSAIIDI 418 (706)
T ss_dssp EEECTTSSEEEEE
T ss_pred EEECCCCCEEEEE
Confidence 9999999877654
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.80 E-value=4.1e-18 Score=174.91 Aligned_cols=249 Identities=11% Similarity=0.040 Sum_probs=178.7
Q ss_pred CCCCCcceeeccce------eeeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCC-CeeeeEEEeeccccEEeEEec
Q 003423 2 GKKDLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEA-GTLIRPFQVFHGIRLHGISCN 74 (821)
Q Consensus 2 ~~~~i~~w~~~~~~------~~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t-~~~~~~~~~~~~~~i~~i~~~ 74 (821)
.|++|.+||+.+++ |.+.|.+++|+ |+ +++|+++.++.|.+||+.+ ++.......+....+.++.|+
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~s--pd----g~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTPELFEAPNWS--PD----GKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEESSCCEEEEEC--TT----SSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred cceeEEEEeCCCCceeeeccCCcceEeeEEC--CC----CCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence 46789999999876 55679999999 99 7788888899999999999 877665554444568889999
Q ss_pred cccCCCCCCccceeeEEEEE--cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEE-
Q 003423 75 FINCTEGSVSTRVTFEVALF--GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA- 151 (821)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~~~--g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~- 151 (821)
|++ ..++++. .++..+||.++... .....+..+. .+..++|+| +++.|+
T Consensus 94 pdg----------~~l~~~~~~~~~~~~l~~~~~~~--------------~~~~~~~~~~-~~~~~~~sp---dg~~l~~ 145 (297)
T 2ojh_A 94 PDG----------ALYAISDKVEFGKSAIYLLPSTG--------------GTPRLMTKNL-PSYWHGWSP---DGKSFTY 145 (297)
T ss_dssp TTS----------SEEEEEECTTTSSCEEEEEETTC--------------CCCEECCSSS-SEEEEEECT---TSSEEEE
T ss_pred CCC----------CEEEEEEeCCCCcceEEEEECCC--------------CceEEeecCC-CccceEECC---CCCEEEE
Confidence 663 2344444 33677888876432 1123343343 489999999 999877
Q ss_pred EEECCCcEEEEEccC-CceeEEEccCcceeEEEEeeccCCccCeEEEEEe-eCCEEEEEEcccCCcccCCCCCCCcccCC
Q 003423 152 IGCSDNSIRVWDISN-SSIILEVHSPERCLLYSMKLWGDNLEALRIASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (821)
Q Consensus 152 t~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 229 (821)
++..++.++||++.. +.....+..+. ..+.++.+ ++++..|+.++ .++.+.+|++..
T Consensus 146 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~---s~dg~~l~~~~~~~~~~~i~~~~~----------------- 204 (297)
T 2ojh_A 146 CGIRDQVFDIYSMDIDSGVETRLTHGE-GRNDGPDY---SPDGRWIYFNSSRTGQMQIWRVRV----------------- 204 (297)
T ss_dssp EEEETTEEEEEEEETTTCCEEECCCSS-SCEEEEEE---CTTSSEEEEEECTTSSCEEEEEET-----------------
T ss_pred EECCCCceEEEEEECCCCcceEcccCC-CccccceE---CCCCCEEEEEecCCCCccEEEECC-----------------
Confidence 778899999999753 23334443333 23455655 57888777665 589999999861
Q ss_pred CCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCC-----------CeEEEEecccCcccCCCCcee
Q 003423 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD-----------RSARIWEVRAEYWKDSDSIEE 298 (821)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~D-----------g~i~iwd~~~~~~~~~~~~~~ 298 (821)
.......+..|...+.+++|+|++++|++++.+ +.|.+||+.+++. ..
T Consensus 205 ---------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~------~~ 263 (297)
T 2ojh_A 205 ---------------DGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV------ET 263 (297)
T ss_dssp ---------------TSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC------EE
T ss_pred ---------------CCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc------ee
Confidence 223455667788889999999999999888776 5699999987654 22
Q ss_pred eeceEEeccceeEEEEEEc--CCEEEEEeCCC
Q 003423 299 VGSSVLYGHNARVWDCCLT--DSFIITAGEDC 328 (821)
Q Consensus 299 ~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg 328 (821)
+ ....+|...+.+++|+ +++|++++.+.
T Consensus 264 ~--~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 264 L--FDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp E--EEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred e--eccCCCCcccccceECCCCCEEEEEEecc
Confidence 2 2445788889999998 46777776553
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.79 E-value=2.5e-17 Score=191.68 Aligned_cols=276 Identities=7% Similarity=0.018 Sum_probs=190.6
Q ss_pred eeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCC
Q 003423 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (821)
Q Consensus 18 ~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~ 97 (821)
.+|++++|+ || +.++.+.++.|++||+.+++...... . ...+..++|+|++ ..++...++
T Consensus 82 ~~v~~~~~s--pd-----~~~~~~~~~~i~~~d~~~~~~~~l~~-~-~~~~~~~~~SpdG-----------~~la~~~~~ 141 (706)
T 2z3z_A 82 FPSFRTLDA--GR-----GLVVLFTQGGLVGFDMLARKVTYLFD-T-NEETASLDFSPVG-----------DRVAYVRNH 141 (706)
T ss_dssp CCCEEEEET--TT-----TEEEEEETTEEEEEETTTTEEEEEEC-C-TTCCTTCEECTTS-----------SEEEEEETT
T ss_pred cCceeEEEC--CC-----CeEEEEECCEEEEEECCCCceEEccC-C-cccccCCcCCCCC-----------CEEEEEECC
Confidence 469999999 87 35555577999999999987654433 2 3357888898663 356667889
Q ss_pred eEEEEEEee-----cCCCCCCCCCccccccceeeeccCCC--------------CcEEEEEEeecCCCCCEEEEEE----
Q 003423 98 RVKLFELNF-----ELSPNSQYQPETCVNLSLVQSLPRLS--------------HWVFDVCFLKVCNGNRSLAIGC---- 154 (821)
Q Consensus 98 ~v~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~h~--------------~~I~~~~~~~~~~~~~~l~t~~---- 154 (821)
.|.+|++.. +. .......+. ..+.+++|+| +|++|++++
T Consensus 142 ~i~v~~~~~~~~~~g~---------------~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp---Dg~~la~~~~d~~ 203 (706)
T 2z3z_A 142 NLYIARGGKLGEGMSR---------------AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP---KGSCLAFYRMDQS 203 (706)
T ss_dssp EEEEEECBCTTSCCCC---------------CEESCSCCBTTEEESSCCGGGCTTCCCSEEECT---TSSEEEEEEEECT
T ss_pred eEEEEecCcccccCCC---------------cEEeccCCCCCeEcccchhhhhcCCCceEEECC---CCCEEEEEEECCC
Confidence 999999986 32 111111222 2358899999 999999987
Q ss_pred -----------------------------CCCcEEEEEccCCceeEEEcc-CcceeEEEEeeccCCccCeEEEEEeeCC-
Q 003423 155 -----------------------------SDNSIRVWDISNSSIILEVHS-PERCLLYSMKLWGDNLEALRIASGTIYN- 203 (821)
Q Consensus 155 -----------------------------~d~~i~iwd~~~~~~~~~~~~-~~~~~~~s~~~~~~s~~~~~l~sg~~dg- 203 (821)
.+..|.+||+.+++....... .....+.++.| ++|+..|++++.++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~---spdg~~l~~~~~~~~ 280 (706)
T 2z3z_A 204 MVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSW---SPDENILYVAEVNRA 280 (706)
T ss_dssp TSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEE---CTTSSEEEEEEECTT
T ss_pred CCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEE---ECCCCEEEEEEeCCC
Confidence 446799999998876443322 23344566666 68999999988776
Q ss_pred ----EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccce-eeEEEE-ecCCC---cEEEEEEcC--CCCEEE
Q 003423 204 ----EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA-VNLFRL-VGHEG---SIFRIEWSS--CGSKLV 272 (821)
Q Consensus 204 ----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~h~~---~I~~l~~s~--~~~~l~ 272 (821)
.|.+||.. ++ ...... ..+.. .+.+++|+| +|++|+
T Consensus 281 ~~~~~v~~~d~~---------------------------------~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~ 327 (706)
T 2z3z_A 281 QNECKVNAYDAE---------------------------------TGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIW 327 (706)
T ss_dssp SCEEEEEEEETT---------------------------------TCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEE
T ss_pred CCeeEEEEEECC---------------------------------CCceeeEEEEccCCCeECccCCceeecCCCCEEEE
Confidence 89999987 22 111111 12222 246789999 999999
Q ss_pred EEeCCCeEEEEecc-cCcccCCCCceeeeceEEeccceeEEE-EEEc--CCEEEE-EeCCC----eEEEEcCCCceeeEe
Q 003423 273 SVSDDRSARIWEVR-AEYWKDSDSIEEVGSSVLYGHNARVWD-CCLT--DSFIIT-AGEDC----TCRVWGSDGKQLKMI 343 (821)
Q Consensus 273 s~s~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~h~~~i~~-v~~~--~~~l~s-~~~dg----~i~iwd~~~~~~~~~ 343 (821)
+++.|+.++||++. ++.. . ..+..|...+.+ ++|+ ++.|+. +..++ .|..|+.++.....+
T Consensus 328 ~~~~~g~~~l~~~~~~~~~-----~-----~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l 397 (706)
T 2z3z_A 328 QSRRDGWNHLYLYDTTGRL-----I-----RQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDL 397 (706)
T ss_dssp EECTTSSCEEEEEETTSCE-----E-----EECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEES
T ss_pred EEccCCccEEEEEECCCCE-----E-----EecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceec
Confidence 99999999999887 3322 2 355667777776 7898 355554 44444 566667644445555
Q ss_pred ecccCCCeEEEEEecCCCEEEEEeCC----CcEEEEEcCC
Q 003423 344 KEHIGRGIWRCLYDSLSSLLVTAGFD----SAIKVHQFQA 379 (821)
Q Consensus 344 ~~h~~~~i~~l~~~~~~~~l~tg~~d----g~I~iwd~~~ 379 (821)
. +.. .+.+++|+|++++++....+ +.|.+||+++
T Consensus 398 ~-~~~-~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 398 T-PES-GMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp C-CSS-SEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred c-CCC-ceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence 4 444 58999999999988876544 4599999865
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.79 E-value=3.1e-17 Score=168.34 Aligned_cols=249 Identities=11% Similarity=0.017 Sum_probs=180.3
Q ss_pred cCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEee-cCCCCCCCCCcccc
Q 003423 42 SGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNF-ELSPNSQYQPETCV 120 (821)
Q Consensus 42 ~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~-~~~~~~~~~~~~~~ 120 (821)
.++.|++||+.+++...... + ...|.++.|+|++ .++++.+++.|.+|++.. ..
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~-~-~~~v~~~~~spdg-----------~~l~~~~~~~i~~~d~~~~~~------------ 74 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQ-T-PELFEAPNWSPDG-----------KYLLLNSEGLLYRLSLAGDPS------------ 74 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEE-E-SSCCEEEEECTTS-----------SEEEEEETTEEEEEESSSCCS------------
T ss_pred cceeEEEEeCCCCceeeecc-C-CcceEeeEECCCC-----------CEEEEEcCCeEEEEeCCCCCC------------
Confidence 36899999999998764443 3 3479999999763 466677799999999875 32
Q ss_pred ccceeeeccCC-CCcEEEEEEeecCCCCCEEEEEE--CCCcEEEEEcc--CCceeEEEccCcceeEEEEeeccCCccCeE
Q 003423 121 NLSLVQSLPRL-SHWVFDVCFLKVCNGNRSLAIGC--SDNSIRVWDIS--NSSIILEVHSPERCLLYSMKLWGDNLEALR 195 (821)
Q Consensus 121 ~~~~~~~~~~h-~~~I~~~~~~~~~~~~~~l~t~~--~d~~i~iwd~~--~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~ 195 (821)
......+| ...+.+++|+| ++++|++++ .++..+||.+. ++. ...+..+.. +..+.+ ++++..
T Consensus 75 ---~~~~~~~~~~~~~~~~~~sp---dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~--~~~~~~---spdg~~ 142 (297)
T 2ojh_A 75 ---PEKVDTGFATICNNDHGISP---DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLP--SYWHGW---SPDGKS 142 (297)
T ss_dssp ---CEECCCTTCCCBCSCCEECT---TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSS--EEEEEE---CTTSSE
T ss_pred ---ceEeccccccccccceEECC---CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCC--ccceEE---CCCCCE
Confidence 22333444 46789999999 999999998 44566666654 433 344443332 445555 578887
Q ss_pred EE-EEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEE
Q 003423 196 IA-SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV 274 (821)
Q Consensus 196 l~-sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~ 274 (821)
|+ ++..++.+.+|++.. .......+..|...+.+++|+|++++|+.+
T Consensus 143 l~~~~~~~~~~~l~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 190 (297)
T 2ojh_A 143 FTYCGIRDQVFDIYSMDI--------------------------------DSGVETRLTHGEGRNDGPDYSPDGRWIYFN 190 (297)
T ss_dssp EEEEEEETTEEEEEEEET--------------------------------TTCCEEECCCSSSCEEEEEECTTSSEEEEE
T ss_pred EEEEECCCCceEEEEEEC--------------------------------CCCcceEcccCCCccccceECCCCCEEEEE
Confidence 76 788999999999861 112334556788899999999999988766
Q ss_pred e-CCCeEEEEeccc-CcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCC-----------CeEEEEcCC-Cc
Q 003423 275 S-DDRSARIWEVRA-EYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED-----------CTCRVWGSD-GK 338 (821)
Q Consensus 275 s-~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~d-----------g~i~iwd~~-~~ 338 (821)
+ .|+.+++|++.. ... . ..+..|...+.+++|+ +++|++++.+ +.|.+||++ ++
T Consensus 191 ~~~~~~~~i~~~~~~~~~-----~-----~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 260 (297)
T 2ojh_A 191 SSRTGQMQIWRVRVDGSS-----V-----ERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN 260 (297)
T ss_dssp ECTTSSCEEEEEETTSSC-----E-----EECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred ecCCCCccEEEECCCCCC-----c-----EEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence 6 589999999873 222 2 4666778889999998 4778777765 569999994 33
Q ss_pred e--eeEeecccCCCeEEEEEecCCCEEEEEeCCC
Q 003423 339 Q--LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370 (821)
Q Consensus 339 ~--~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg 370 (821)
. +..+.+|.. .+..++|+|+++.|++++.+.
T Consensus 261 ~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 261 VETLFDLFGGQG-TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp CEEEEEEEESTT-TSCSCCBCTTSSEEEEEEECC
T ss_pred ceeeeccCCCCc-ccccceECCCCCEEEEEEecc
Confidence 3 333446666 589999999999998887654
No 139
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.79 E-value=9.4e-17 Score=168.78 Aligned_cols=274 Identities=12% Similarity=0.097 Sum_probs=175.7
Q ss_pred eEEe-ecCCeEEEEECC-CCe--eeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcC-CeEEEEEEeecCCCC
Q 003423 37 FLLA-GSGSQVLLYDLE-AGT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE-KRVKLFELNFELSPN 111 (821)
Q Consensus 37 ~l~~-g~~~~i~iwd~~-t~~--~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~-~~v~i~~~~~~~~~~ 111 (821)
++++ +.++.|.+||+. +++ .+..+. ....+.+++|+|++ ..++++..+ +.|++|+++....
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~spdg----------~~l~~~~~~~~~v~~~~~~~~~~-- 72 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVSPDK----------RYLYVGVRPEFRVLAYRIAPDDG-- 72 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSCCCCEEECTTS----------SEEEEEETTTTEEEEEEECTTTC--
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEe--cCCCCceEEECCCC----------CEEEEeecCCCeEEEEEecCCCC--
Confidence 3444 348999999995 443 333332 34468889999663 234555544 8999999973210
Q ss_pred CCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEEC-CCcEEEEEccC---CceeEEEccCcceeEEEEeec
Q 003423 112 SQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISN---SSIILEVHSPERCLLYSMKLW 187 (821)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~-d~~i~iwd~~~---~~~~~~~~~~~~~~~~s~~~~ 187 (821)
..+.+..+..+. .+.+++|+| ++++|++++. ++.|.+||+.+ .+.+..+..... +.++.+
T Consensus 73 ---------~~~~~~~~~~~~-~~~~~~~s~---dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~--~~~~~~- 136 (343)
T 1ri6_A 73 ---------ALTFAAESALPG-SLTHISTDH---QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDG--CHSANI- 136 (343)
T ss_dssp ---------CEEEEEEEECSS-CCSEEEECT---TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTT--BCCCEE-
T ss_pred ---------ceeeccccccCC-CCcEEEEcC---CCCEEEEEecCCCeEEEEECCCCccccccccccCCCC--ceEEEE-
Confidence 133444555444 789999999 9998877665 88899999953 334444443322 233333
Q ss_pred cCCccCeEEEEEe-eCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEE--EEec-CCCcEEEEE
Q 003423 188 GDNLEALRIASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF--RLVG-HEGSIFRIE 263 (821)
Q Consensus 188 ~~s~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-h~~~I~~l~ 263 (821)
++++..+++++ .++.|.+||+... ....... .+.. ....+.+++
T Consensus 137 --s~dg~~l~~~~~~~~~v~~~d~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 184 (343)
T 1ri6_A 137 --SPDNRTLWVPALKQDRICLFTVSDD------------------------------GHLVAQDPAEVTTVEGAGPRHMV 184 (343)
T ss_dssp --CTTSSEEEEEEGGGTEEEEEEECTT------------------------------SCEEEEEEEEEECSTTCCEEEEE
T ss_pred --CCCCCEEEEecCCCCEEEEEEecCC------------------------------CceeeecccccccCCCCCcceEE
Confidence 57888777776 8999999999710 0111111 2233 345788999
Q ss_pred EcCCCCEEEEE-eCCCeEEEEecccCcccCCCCceeeeceE-Ee-c--cceeEEEEEEc--CCEEE-EEeCCCeEEEEcC
Q 003423 264 WSSCGSKLVSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSV-LY-G--HNARVWDCCLT--DSFII-TAGEDCTCRVWGS 335 (821)
Q Consensus 264 ~s~~~~~l~s~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~-~--h~~~i~~v~~~--~~~l~-s~~~dg~i~iwd~ 335 (821)
|+|++++|+.+ ..++.|++|++..... ......... .. + ....+.+++|+ +++++ +...++.|.+|++
T Consensus 185 ~~pdg~~l~~~~~~~~~i~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~ 260 (343)
T 1ri6_A 185 FHPNEQYAYCVNELNSSVDVWELKDPHG----NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSV 260 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEEEESSCTTS----CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCC----cEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEE
Confidence 99999977544 5889999999964211 011110001 11 1 12356789998 35666 5558999999999
Q ss_pred C--C---ceeeEeecccCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcC
Q 003423 336 D--G---KQLKMIKEHIGRGIWRCLYDSLSSLLVTAG-FDSAIKVHQFQ 378 (821)
Q Consensus 336 ~--~---~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~-~dg~I~iwd~~ 378 (821)
+ + +.+..+..+. .+..++|+|++++|++++ .++.|.+|+++
T Consensus 261 ~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 261 SEDGSVLSKEGFQPTET--QPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp CTTSCCEEEEEEEECSS--SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred cCCCCceEEeeeecCCC--ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 5 2 2333344333 378999999999888887 68999999764
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.78 E-value=1e-16 Score=167.68 Aligned_cols=275 Identities=10% Similarity=0.019 Sum_probs=182.8
Q ss_pred cceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEc-CCeEEEEEEeecCCCCC
Q 003423 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNS 112 (821)
Q Consensus 35 ~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g-~~~v~i~~~~~~~~~~~ 112 (821)
..+++++. ++.|.+||..+++.+..+..... .+ ++.++|++ ..++++.. ++.|.+||+..+.
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~-~~~~s~dg----------~~l~~~~~~~~~i~~~d~~~~~---- 73 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYD-FV-DTAITSDC----------SNVVVTSDFCQTLVQIETQLEP---- 73 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECCCC-EE-EEEECSSS----------CEEEEEESTTCEEEEEECSSSS----
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEccCC-cc-eEEEcCCC----------CEEEEEeCCCCeEEEEECCCCc----
Confidence 44444444 79999999999999888875433 45 89998663 23444444 7899999987542
Q ss_pred CCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCC---cEEEEEccCCceeEEEccCcceeEEEEeeccC
Q 003423 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN---SIRVWDISNSSIILEVHSPERCLLYSMKLWGD 189 (821)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~ 189 (821)
. ....+..+..+..+++|+| ++++|+++..++ .|.+||+.+++.+..+..+.. ...+.+
T Consensus 74 ---------~-~~~~~~~~~~~~~~~~~s~---dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~~~~~--- 135 (331)
T 3u4y_A 74 ---------P-KVVAIQEGQSSMADVDITP---DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYD--AVGIAI--- 135 (331)
T ss_dssp ---------C-EEEEEEECSSCCCCEEECT---TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTT--EEEEEE---
T ss_pred ---------e-eEEecccCCCCccceEECC---CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCC--ccceEE---
Confidence 1 1445555666666699999 999998555443 899999999988877765443 245555
Q ss_pred CccCeEEEEE-eeCCE-EEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCC
Q 003423 190 NLEALRIASG-TIYNE-IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC 267 (821)
Q Consensus 190 s~~~~~l~sg-~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~ 267 (821)
+|++.+++++ ..++. |.+|++...... .... ...+ .+...+.+++|+|+
T Consensus 136 spdg~~l~~~~~~~~~~i~~~~~~~~g~~---------------------------~~~~-~~~~-~~~~~~~~~~~spd 186 (331)
T 3u4y_A 136 SPNGNGLILIDRSSANTVRRFKIDADGVL---------------------------FDTG-QEFI-SGGTRPFNITFTPD 186 (331)
T ss_dssp CTTSSCEEEEEETTTTEEEEEEECTTCCE---------------------------EEEE-EEEE-CSSSSEEEEEECTT
T ss_pred CCCCCEEEEEecCCCceEEEEEECCCCcE---------------------------eecC-Cccc-cCCCCccceEECCC
Confidence 5788755544 45577 999998711000 0111 1222 34556899999999
Q ss_pred CCEE-EEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEE-eCCCeEEEEcC-CCce--e
Q 003423 268 GSKL-VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA-GEDCTCRVWGS-DGKQ--L 340 (821)
Q Consensus 268 ~~~l-~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~-~~dg~i~iwd~-~~~~--~ 340 (821)
|++| +++..++.|++||+.+++. .+.+ ..+. ....+..++|+ +++++.+ ..++.|.+||+ +++. +
T Consensus 187 g~~l~v~~~~~~~v~v~d~~~~~~-----~~~~--~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~ 258 (331)
T 3u4y_A 187 GNFAFVANLIGNSIGILETQNPEN-----ITLL--NAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFV 258 (331)
T ss_dssp SSEEEEEETTTTEEEEEECSSTTS-----CEEE--EEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCCeEEEEECCCCcc-----ccee--eecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeee
Confidence 9965 5555789999999987653 2222 2333 33566788998 4555544 45789999999 4554 3
Q ss_pred eEeecc----cC--CCeEEEEEecCCCEEEEEeC-CCcEEEEEcCCc
Q 003423 341 KMIKEH----IG--RGIWRCLYDSLSSLLVTAGF-DSAIKVHQFQAF 380 (821)
Q Consensus 341 ~~~~~h----~~--~~i~~l~~~~~~~~l~tg~~-dg~I~iwd~~~~ 380 (821)
..+..+ .. .....++|+|++++|++++. ++.|.+||+...
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 259 KSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp EEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred cccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 333222 11 11345899999998866554 669999999653
No 141
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.78 E-value=3.6e-16 Score=165.07 Aligned_cols=267 Identities=11% Similarity=0.017 Sum_probs=189.6
Q ss_pred eeeeEEEEEeccCCCCCCcceEEeec--------CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCcccee
Q 003423 17 LGEISALCFVHLPSHLSSLPFLLAGS--------GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVT 88 (821)
Q Consensus 17 ~~~Vt~l~~~~~p~~~~~~~~l~~g~--------~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~ 88 (821)
...+..++|+ |+ +++++++. ++.|.+||..+++.+..+... ..++++.+++++ .
T Consensus 40 ~~~~~~~~~s--~d----g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg----------~ 101 (353)
T 3vgz_A 40 GKGAYEMAYS--QQ----ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND--LKPFGATINNTT----------Q 101 (353)
T ss_dssp ESSEEEEEEE--TT----TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES--SCCCSEEEETTT----------T
T ss_pred ccCccceEEC--CC----CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC--CCcceEEECCCC----------C
Confidence 3457889999 98 55555544 568999999999998888753 347888998653 2
Q ss_pred eEEEEE-cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCC---------cEEEEEEeecCCCCCEEEEEE--CC
Q 003423 89 FEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH---------WVFDVCFLKVCNGNRSLAIGC--SD 156 (821)
Q Consensus 89 ~~l~~~-g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~I~~~~~~~~~~~~~~l~t~~--~d 156 (821)
.++++. +++.|.+||+... +....+..+.. .+.+++|+| +++.++++. .+
T Consensus 102 ~l~v~~~~~~~v~~~d~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---dg~~l~~~~~~~~ 163 (353)
T 3vgz_A 102 TLWFGNTVNSAVTAIDAKTG---------------EVKGRLVLDDRKRTEEVRPLQPRELVADD---ATNTVYISGIGKE 163 (353)
T ss_dssp EEEEEETTTTEEEEEETTTC---------------CEEEEEESCCCCCCSSCCCCEEEEEEEET---TTTEEEEEEESSS
T ss_pred EEEEEecCCCEEEEEeCCCC---------------eeEEEEecCCCccccccCCCCCceEEECC---CCCEEEEEecCCC
Confidence 344443 4689999998643 23333433322 378999999 998877776 47
Q ss_pred CcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcce
Q 003423 157 NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKC 236 (821)
Q Consensus 157 ~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (821)
+.|.+||..+++.+..+...... ...+.+ ++++..+++++.++.|.+||..
T Consensus 164 ~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~---s~dg~~l~~~~~~~~i~~~d~~------------------------- 214 (353)
T 3vgz_A 164 SVIWVVDGGNIKLKTAIQNTGKM-STGLAL---DSEGKRLYTTNADGELITIDTA------------------------- 214 (353)
T ss_dssp CEEEEEETTTTEEEEEECCCCTT-CCCCEE---ETTTTEEEEECTTSEEEEEETT-------------------------
T ss_pred ceEEEEcCCCCceEEEecCCCCc-cceEEE---CCCCCEEEEEcCCCeEEEEECC-------------------------
Confidence 88999999999988877622210 112222 4788899999999999999988
Q ss_pred eeecccccceeeEEEEe----cCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEecccCcccCCCCceeeeceEEeccceeE
Q 003423 237 FKLQDQQHTAVNLFRLV----GHEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311 (821)
Q Consensus 237 ~~~~~~~~~~~~~~~~~----~h~~~I~~l~~s~~~~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i 311 (821)
..+....+. ++...+.+++|+|++++|+.++ .++.|.+||..+++. .. .+.... .
T Consensus 215 --------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~-----~~-----~~~~~~--~ 274 (353)
T 3vgz_A 215 --------DNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI-----LA-----KVAAPE--S 274 (353)
T ss_dssp --------TTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE-----EE-----EEECSS--C
T ss_pred --------CCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE-----EE-----EEEcCC--C
Confidence 444444444 3666789999999999776555 459999999988765 32 222222 1
Q ss_pred EEEEEc--CCEEE-EEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCC
Q 003423 312 WDCCLT--DSFII-TAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370 (821)
Q Consensus 312 ~~v~~~--~~~l~-s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg 370 (821)
..++|+ +++++ +...++.|.+||. +++.+..+.... .+.+++|+|++++|+++..++
T Consensus 275 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 275 LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT--HPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS--EEEEEEECTTSCEEEEEEECC
T ss_pred ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC--CCCeEEEcCCCCEEEEEEccc
Confidence 457777 45454 4447999999999 677777776543 489999999999887777664
No 142
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.78 E-value=2e-17 Score=193.70 Aligned_cols=277 Identities=12% Similarity=0.089 Sum_probs=193.7
Q ss_pred eeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCe--eeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcC
Q 003423 19 EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (821)
Q Consensus 19 ~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~--~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~ 96 (821)
.|.+++|+ || +++|+.+.++.|.+||+.+++ .+..+..+ ...+..+.|+|++ ..++...+
T Consensus 110 ~v~~~~~S--pD----g~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~-~~~~~~~~~SPDG-----------~~la~~~~ 171 (741)
T 2ecf_A 110 GIVDYQWS--PD----AQRLLFPLGGELYLYDLKQEGKAAVRQLTHG-EGFATDAKLSPKG-----------GFVSFIRG 171 (741)
T ss_dssp ESCCCEEC--TT----SSEEEEEETTEEEEEESSSCSTTSCCBCCCS-SSCEEEEEECTTS-----------SEEEEEET
T ss_pred CcceeEEC--CC----CCEEEEEeCCcEEEEECCCCCcceEEEcccC-CcccccccCCCCC-----------CEEEEEeC
Confidence 48899999 99 778888878999999999882 33344433 3468999999664 36666677
Q ss_pred CeEEEEEEeecCCCCCCCCCccccccceeeeccCCCC--------c--------EEEEEEeecCCCCCEEEEEECCC---
Q 003423 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH--------W--------VFDVCFLKVCNGNRSLAIGCSDN--- 157 (821)
Q Consensus 97 ~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--------~--------I~~~~~~~~~~~~~~l~t~~~d~--- 157 (821)
+.|.+|++..+. .......+.. + +.+++|+| +|++|++++.|+
T Consensus 172 ~~i~~~d~~~g~---------------~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp---Dg~~l~~~~~d~~~~ 233 (741)
T 2ecf_A 172 RNLWVIDLASGR---------------QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP---DDSAIAYARIDESPV 233 (741)
T ss_dssp TEEEEEETTTTE---------------EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT---TSSCEEEEEEECTTS
T ss_pred CcEEEEecCCCC---------------EEEeccCCccceeccccceeeeeccccccceEECC---CCCEEEEEEEcCCCC
Confidence 899999986432 1111222222 1 47899999 999999987765
Q ss_pred ------------------------------cEEEEEccC-CceeEEEcc-CcceeEEEEeeccCCccCeEEEEEee----
Q 003423 158 ------------------------------SIRVWDISN-SSIILEVHS-PERCLLYSMKLWGDNLEALRIASGTI---- 201 (821)
Q Consensus 158 ------------------------------~i~iwd~~~-~~~~~~~~~-~~~~~~~s~~~~~~s~~~~~l~sg~~---- 201 (821)
.|.+||+.+ ++....... .....+.++.| +|+..|+.+..
T Consensus 234 ~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~----pDg~~l~~~~~~~~~ 309 (741)
T 2ecf_A 234 PVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW----RDPQHLSFQRQSRDQ 309 (741)
T ss_dssp CEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE----EETTEEEEEEEETTS
T ss_pred ceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe----CCCCEEEEEEecccC
Confidence 788999988 775443322 23344556555 57777776654
Q ss_pred -CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCC----cEEEEEEcCCCCEEEEEeC
Q 003423 202 -YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG----SIFRIEWSSCGSKLVSVSD 276 (821)
Q Consensus 202 -dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----~I~~l~~s~~~~~l~s~s~ 276 (821)
++.|.+||.. ++.....+..|.. .+..++|+|||+++++++.
T Consensus 310 ~~~~i~~~d~~---------------------------------~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~ 356 (741)
T 2ecf_A 310 KKLDLVEVTLA---------------------------------SNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSER 356 (741)
T ss_dssp SEEEEEEEETT---------------------------------TCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECT
T ss_pred CeEEEEEEECC---------------------------------CCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecC
Confidence 5789999988 3344444444443 4568999999999999999
Q ss_pred CCeEEEEecccCcccCCCCceeeeceEEeccceeEEEE-EEc--CCEE-EEEeCCC--eEEEEcC--CCceeeEeecccC
Q 003423 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC-CLT--DSFI-ITAGEDC--TCRVWGS--DGKQLKMIKEHIG 348 (821)
Q Consensus 277 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v-~~~--~~~l-~s~~~dg--~i~iwd~--~~~~~~~~~~h~~ 348 (821)
|+.++||.+.... . . ..+..|...|..+ .|+ ++.| ++++.++ .+++|++ +++....+.. ..
T Consensus 357 ~g~~~l~~~~~~~-------~-~--~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~ 425 (741)
T 2ecf_A 357 TGFQHLYRIDSKG-------K-A--AALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-AP 425 (741)
T ss_dssp TSSCEEEEECSSS-------C-E--EESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SC
T ss_pred CCccEEEEEcCCC-------C-e--eeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CC
Confidence 9988898876321 1 1 4666777788877 487 3555 4555565 8999998 4666677766 33
Q ss_pred CCeEEEEEecCCCEEEEEeCC----CcEEEEEcCCc
Q 003423 349 RGIWRCLYDSLSSLLVTAGFD----SAIKVHQFQAF 380 (821)
Q Consensus 349 ~~i~~l~~~~~~~~l~tg~~d----g~I~iwd~~~~ 380 (821)
.+..++|+|+++.|+....+ ..+.+++..+.
T Consensus 426 -~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 426 -GMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp -SEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred -CceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 58899999999988776544 46888887553
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.78 E-value=1.7e-16 Score=166.76 Aligned_cols=285 Identities=15% Similarity=0.197 Sum_probs=181.2
Q ss_pred CCCCCcceeec-cce--------eeeeeEEEEEeccCCCCCCcceEEeec-C-CeEEEEECC--CCee--eeEEEeeccc
Q 003423 2 GKKDLSEWRLD-VGQ--------YLGEISALCFVHLPSHLSSLPFLLAGS-G-SQVLLYDLE--AGTL--IRPFQVFHGI 66 (821)
Q Consensus 2 ~~~~i~~w~~~-~~~--------~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~-~~i~iwd~~--t~~~--~~~~~~~~~~ 66 (821)
.|+.|.+|++. ++. +...+.+++|+ |+ +++|+++. + +.|.+|++. +++. +..+.. ..
T Consensus 13 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--pd----g~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~ 84 (343)
T 1ri6_A 13 ESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVS--PD----KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL--PG 84 (343)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEECSSCCCCEEEC--TT----SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC--SS
T ss_pred CCCeEEEEEECCCCcEEEeeeEecCCCCceEEEC--CC----CCEEEEeecCCCeEEEEEecCCCCceeecccccc--CC
Confidence 47889999995 332 33568899999 98 56555554 4 899999998 6653 333433 23
Q ss_pred cEEeEEeccccCCCCCCccceeeEEEEE-cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCC
Q 003423 67 RLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (821)
Q Consensus 67 ~i~~i~~~~~~~~~~~~~~~~~~~l~~~-g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~ 145 (821)
.+.+++|+|++ ..++++. +++.|.+|++..+. ..+....+..+ ..+.+++|+|
T Consensus 85 ~~~~~~~s~dg----------~~l~~~~~~~~~i~~~d~~~~~------------~~~~~~~~~~~-~~~~~~~~s~--- 138 (343)
T 1ri6_A 85 SLTHISTDHQG----------QFVFVGSYNAGNVSVTRLEDGL------------PVGVVDVVEGL-DGCHSANISP--- 138 (343)
T ss_dssp CCSEEEECTTS----------SEEEEEETTTTEEEEEEEETTE------------EEEEEEEECCC-TTBCCCEECT---
T ss_pred CCcEEEEcCCC----------CEEEEEecCCCeEEEEECCCCc------------cccccccccCC-CCceEEEECC---
Confidence 68889998663 2344444 37899999995110 12344444444 3588999999
Q ss_pred CCCEEEEEE-CCCcEEEEEccC-CceeE----EEccCcceeEEEEeeccCCccCeEEEE-EeeCCEEEEEEcccCCcccC
Q 003423 146 GNRSLAIGC-SDNSIRVWDISN-SSIIL----EVHSPERCLLYSMKLWGDNLEALRIAS-GTIYNEIIVWKVDWEHVAPL 218 (821)
Q Consensus 146 ~~~~l~t~~-~d~~i~iwd~~~-~~~~~----~~~~~~~~~~~s~~~~~~s~~~~~l~s-g~~dg~i~vwd~~~~~~~~~ 218 (821)
++++|++++ .++.|.+||+.+ ++... .+..+.......+.+ ++++.++++ +..++.|.+|++....
T Consensus 139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~pdg~~l~~~~~~~~~i~~~~~~~~~---- 211 (343)
T 1ri6_A 139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVF---HPNEQYAYCVNELNSSVDVWELKDPH---- 211 (343)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEE---CTTSSEEEEEETTTTEEEEEESSCTT----
T ss_pred CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEE---CCCCCEEEEEeCCCCEEEEEEecCCC----
Confidence 999888887 899999999987 54432 233333334455665 578876654 4588999999996100
Q ss_pred CCCCCCcccCCCCCCcceeeecccccceeeEEEEe----cC--CCcEEEEEEcCCCCEEE-EEeCCCeEEEEecccCccc
Q 003423 219 LNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV----GH--EGSIFRIEWSSCGSKLV-SVSDDRSARIWEVRAEYWK 291 (821)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~h--~~~I~~l~~s~~~~~l~-s~s~Dg~i~iwd~~~~~~~ 291 (821)
........+. +| ...+.+++|+|++++|+ ++..|+.|++||+.....
T Consensus 212 -------------------------g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~- 265 (343)
T 1ri6_A 212 -------------------------GNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS- 265 (343)
T ss_dssp -------------------------SCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC-
T ss_pred -------------------------CcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC-
Confidence 0111111211 11 34677899999998776 556899999999983211
Q ss_pred CCCCceeeeceEEeccceeEEEEEEc--CCEEEEEe-CCCeEEEEcC---CCc--eeeEeecccCCCeEEEEEecCCC
Q 003423 292 DSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG-EDCTCRVWGS---DGK--QLKMIKEHIGRGIWRCLYDSLSS 361 (821)
Q Consensus 292 ~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~-~dg~i~iwd~---~~~--~~~~~~~h~~~~i~~l~~~~~~~ 361 (821)
..+.+ ..+..+.. +.+++|+ +++|++++ .++.+.+|++ .++ .+..+... ....+++|.++.+
T Consensus 266 ---~~~~~--~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g--~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 266 ---VLSKE--GFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG--QGPMWVVVNAHEG 335 (343)
T ss_dssp ---CEEEE--EEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS--SSCCEEEEEEEC-
T ss_pred ---ceEEe--eeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC--CCCeeEEEEcccC
Confidence 01222 23333333 7889998 46777777 6899999966 233 23333332 2356778877543
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.76 E-value=1.6e-16 Score=166.52 Aligned_cols=261 Identities=7% Similarity=-0.021 Sum_probs=183.6
Q ss_pred eEEee-cCCeEEEEECCCCeeeeEEEeeccc-cEEeEEeccccCCCCCCccceeeEEEEE-cCCeEEEEEEeecCCCCCC
Q 003423 37 FLLAG-SGSQVLLYDLEAGTLIRPFQVFHGI-RLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQ 113 (821)
Q Consensus 37 ~l~~g-~~~~i~iwd~~t~~~~~~~~~~~~~-~i~~i~~~~~~~~~~~~~~~~~~~l~~~-g~~~v~i~~~~~~~~~~~~ 113 (821)
+++++ .++.|.+||+.+++.+..+...... .+++++++|++ ..++++. .++.|.+||+....
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg----------~~l~v~~~~~~~v~~~d~~~~~----- 67 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGG----------RIAYATVNKSESLVKIDLVTGE----- 67 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTS----------SEEEEEETTTTEEEEEETTTCC-----
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCC----------CEEEEEeCCCCeEEEEECCCCC-----
Confidence 55555 4899999999999998888753321 47889998663 2344444 46899999986432
Q ss_pred CCCccccccceeeeccC-----CCCcEEEEEEeecCCCCCEEEEEE------------CCCcEEEEEccCCceeEEEccC
Q 003423 114 YQPETCVNLSLVQSLPR-----LSHWVFDVCFLKVCNGNRSLAIGC------------SDNSIRVWDISNSSIILEVHSP 176 (821)
Q Consensus 114 ~~~~~~~~~~~~~~~~~-----h~~~I~~~~~~~~~~~~~~l~t~~------------~d~~i~iwd~~~~~~~~~~~~~ 176 (821)
....+.. |...+.+++|+| ++++|+++. .++.|.+||+.+++.+..+...
T Consensus 68 ----------~~~~~~~~~~~~~~~~~~~~~~s~---dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 134 (337)
T 1pby_B 68 ----------TLGRIDLSTPEERVKSLFGAALSP---DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP 134 (337)
T ss_dssp ----------EEEEEECCBTTEEEECTTCEEECT---TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC
T ss_pred ----------eEeeEEcCCcccccccccceEECC---CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC
Confidence 2222221 123577899999 999998886 5799999999998887776543
Q ss_pred cceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCC
Q 003423 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (821)
Q Consensus 177 ~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 256 (821)
.. ...+.+ ++++.+|+++ ++.|.+||.. ..+....+..+.
T Consensus 135 ~~--~~~~~~---s~dg~~l~~~--~~~i~~~d~~---------------------------------~~~~~~~~~~~~ 174 (337)
T 1pby_B 135 RQ--ITMLAW---ARDGSKLYGL--GRDLHVMDPE---------------------------------AGTLVEDKPIQS 174 (337)
T ss_dssp SS--CCCEEE---CTTSSCEEEE--SSSEEEEETT---------------------------------TTEEEEEECSTT
T ss_pred CC--cceeEE---CCCCCEEEEe--CCeEEEEECC---------------------------------CCcEeeeeeccc
Confidence 32 223333 5788877777 6899999998 444444444333
Q ss_pred CcEEEEEEcCCCCEEEEEeC-CC-----------------------eEEEEecccCcccCCCCceeeeceEEeccceeEE
Q 003423 257 GSIFRIEWSSCGSKLVSVSD-DR-----------------------SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (821)
Q Consensus 257 ~~I~~l~~s~~~~~l~s~s~-Dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 312 (821)
.. ..+.|+|+++.|+..+. ++ .|.+||+.+++. . . .....+...+.
T Consensus 175 ~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-----~-~---~~~~~~~~~~~ 244 (337)
T 1pby_B 175 WE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM-----A-M---REVRIMDVFYF 244 (337)
T ss_dssp TT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE-----E-E---EEEEECSSCEE
T ss_pred cC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc-----e-E---eecCCCCCcee
Confidence 10 12377888876644432 22 468999988654 2 1 24556667788
Q ss_pred EEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 313 DCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 313 ~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
+++|+ +++++++ ++.|.+||+ +++.+..+..+. .+.+++|+|++++|++++.++.|.+||+.+
T Consensus 245 ~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~ 310 (337)
T 1pby_B 245 STAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH--SYYSVNVSTDGSTVWLGGALGDLAAYDAET 310 (337)
T ss_dssp EEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS--CCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred eEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC--ceeeEEECCCCCEEEEEcCCCcEEEEECcC
Confidence 99998 4677777 799999999 566766666443 478999999999999999999999999954
No 145
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.75 E-value=2.6e-15 Score=158.12 Aligned_cols=269 Identities=9% Similarity=-0.022 Sum_probs=174.7
Q ss_pred CCeEEEEEC--CCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEc---CCeEEEEEEeecCCCCCCCCCc
Q 003423 43 GSQVLLYDL--EAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPE 117 (821)
Q Consensus 43 ~~~i~iwd~--~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g---~~~v~i~~~~~~~~~~~~~~~~ 117 (821)
++.|.+|++ +++++...........+..++++|++ . ++++.. ++.|.+|++..+.
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg----------~-l~~~~~~~~~~~v~~~~~~~g~--------- 74 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKD----------C-LYSVDKEDDEGGIAAWQIDGQT--------- 74 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTC----------E-EEEEEEETTEEEEEEEEEETTE---------
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCC----------e-EEEEEecCCCceEEEEEecCCc---------
Confidence 345666655 56765442222233457788888664 2 444443 5899999996432
Q ss_pred cccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEE-CCCcEEEEEccC-Cc--eeEEEccCc--------ceeEEEEe
Q 003423 118 TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISN-SS--IILEVHSPE--------RCLLYSMK 185 (821)
Q Consensus 118 ~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~-~d~~i~iwd~~~-~~--~~~~~~~~~--------~~~~~s~~ 185 (821)
.+.+..+..+...+..++|+| ++++|++++ .++.|.+|++.. +. .+..+.... ...+.++.
T Consensus 75 ----~~~~~~~~~~~~~p~~~a~sp---dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 147 (347)
T 3hfq_A 75 ----AHKLNTVVAPGTPPAYVAVDE---ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTD 147 (347)
T ss_dssp ----EEEEEEEEEESCCCSEEEEET---TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEE
T ss_pred ----EEEeeeeecCCCCCEEEEECC---CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEE
Confidence 345555556777889999999 999888887 679999999963 32 233332211 11244555
Q ss_pred eccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCC-CcEEEEEE
Q 003423 186 LWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE-GSIFRIEW 264 (821)
Q Consensus 186 ~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~I~~l~~ 264 (821)
+ +|++.++++...++.|.+|++... ........+..+. ..+..++|
T Consensus 148 ~---spdg~l~v~~~~~~~v~~~~~~~~------------------------------g~~~~~~~~~~~~g~~p~~~~~ 194 (347)
T 3hfq_A 148 L---TPDNRLAVIDLGSDKVYVYNVSDA------------------------------GQLSEQSVLTMEAGFGPRHLVF 194 (347)
T ss_dssp E---CTTSCEEEEETTTTEEEEEEECTT------------------------------SCEEEEEEEECCTTCCEEEEEE
T ss_pred E---CCCCcEEEEeCCCCEEEEEEECCC------------------------------CcEEEeeeEEcCCCCCCceEEE
Confidence 5 578887777777899999998710 0112222233333 36788999
Q ss_pred cCCCCEEEE-EeCCCeEEEEecccCcccCCCCceeeeceEEeccc------eeEEEEEEc--CCEE-EEEeCCCeEEEEc
Q 003423 265 SSCGSKLVS-VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN------ARVWDCCLT--DSFI-ITAGEDCTCRVWG 334 (821)
Q Consensus 265 s~~~~~l~s-~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~------~~i~~v~~~--~~~l-~s~~~dg~i~iwd 334 (821)
+|+|++|+. ...++.|++|++..... ..... ....... ..+..++|+ +++| ++...++.|.+|+
T Consensus 195 spdg~~l~v~~~~~~~v~v~~~~~~~g----~~~~~--~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~ 268 (347)
T 3hfq_A 195 SPDGQYAFLAGELSSQIASLKYDTQTG----AFTQL--GIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFA 268 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTTT----EEEEE--EEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEE
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCC----ceEEe--eeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEE
Confidence 999996654 56789999999885211 01111 1222211 458889998 4556 5666789999999
Q ss_pred CC--C--ceeeEeecccCCCeEEEEEecCCCEEEEEeCC-CcEEEEEcC
Q 003423 335 SD--G--KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD-SAIKVHQFQ 378 (821)
Q Consensus 335 ~~--~--~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~d-g~I~iwd~~ 378 (821)
++ + +.+..+..+.. .+..++|+|++++|++++.+ +.|.+|+++
T Consensus 269 ~~~~g~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 269 VTADGHLTLIQQISTEGD-FPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp ECGGGCEEEEEEEECSSS-CCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ECCCCcEEEeEEEecCCC-CcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 84 3 34444555444 47899999999988888765 899999774
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.74 E-value=1.5e-16 Score=166.76 Aligned_cols=258 Identities=7% Similarity=-0.010 Sum_probs=179.3
Q ss_pred CCCCCcceeeccceee------e---eeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeec----ccc
Q 003423 2 GKKDLSEWRLDVGQYL------G---EISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFH----GIR 67 (821)
Q Consensus 2 ~~~~i~~w~~~~~~~~------~---~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~----~~~ 67 (821)
.+++|.+||+.+++.. . .+..++|+ |+ +..+++++. ++.|.+||+.+++.+..+.... ...
T Consensus 9 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s--~d---g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 83 (337)
T 1pby_B 9 RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVA--PG---GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKS 83 (337)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEEC--TT---SSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEEC
T ss_pred CCCeEEEEECCCCcEEEEEEcCCCCCCccceEEc--CC---CCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccccc
Confidence 4788999999988722 2 47889999 98 233444444 6899999999999888877533 124
Q ss_pred EEeEEeccccCCCCCCccceeeEEEEE------------cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcE
Q 003423 68 LHGISCNFINCTEGSVSTRVTFEVALF------------GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV 135 (821)
Q Consensus 68 i~~i~~~~~~~~~~~~~~~~~~~l~~~------------g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 135 (821)
+.++.++|++ + .++++. .++.|.+||+... +....+.. ...+
T Consensus 84 ~~~~~~s~dg-------~---~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------------~~~~~~~~-~~~~ 137 (337)
T 1pby_B 84 LFGAALSPDG-------K---TLAIYESPVRLELTHFEVQPTRVALYDAETL---------------SRRKAFEA-PRQI 137 (337)
T ss_dssp TTCEEECTTS-------S---EEEEEEEEEEECSSCEEECCCEEEEEETTTT---------------EEEEEEEC-CSSC
T ss_pred ccceEECCCC-------C---EEEEEecccccccccccccCceEEEEECCCC---------------cEEEEEeC-CCCc
Confidence 6778888653 2 333333 4699999998633 23333433 3457
Q ss_pred EEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCc--ceeEEEEeeccCCccCeEEEEEeeC-C---------
Q 003423 136 FDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE--RCLLYSMKLWGDNLEALRIASGTIY-N--------- 203 (821)
Q Consensus 136 ~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~s~~~~~~s~~~~~l~sg~~d-g--------- 203 (821)
.+++|+| ++++|+++ ++.|.+||+.+++.+..+..+. ... .+ ++++..++..+.. +
T Consensus 138 ~~~~~s~---dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~----~~---s~dg~~l~~~~~~~~~~~~~~~~~ 205 (337)
T 1pby_B 138 TMLAWAR---DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAET----YA---QPDVLAVWNQHESSGVMATPFYTA 205 (337)
T ss_dssp CCEEECT---TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTT----BC---CCBCCCCCCCCTTTTEEEEEEEEE
T ss_pred ceeEECC---CCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCc----ee---CCCccEEeeeccCCCceeeeeecc
Confidence 8899999 99988887 6899999999998877766443 222 11 4566555443322 2
Q ss_pred --------------EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCC
Q 003423 204 --------------EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS 269 (821)
Q Consensus 204 --------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~ 269 (821)
.|.+||..+. +.. ...+..|...+.+++|+|+++
T Consensus 206 ~~~~~~~~~~~~~~~v~~~d~~~~-------------------------------~~~-~~~~~~~~~~~~~~~~s~dg~ 253 (337)
T 1pby_B 206 RKDIDPADPTAYRTGLLTMDLETG-------------------------------EMA-MREVRIMDVFYFSTAVNPAKT 253 (337)
T ss_dssp BTTSCTTSGGGEEEEEEEEETTTC-------------------------------CEE-EEEEEECSSCEEEEEECTTSS
T ss_pred ccccccccccccccceEEEeCCCC-------------------------------Cce-EeecCCCCCceeeEEECCCCC
Confidence 4567776610 111 334456778899999999999
Q ss_pred EEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecc
Q 003423 270 KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEH 346 (821)
Q Consensus 270 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h 346 (821)
+|+++ ++.|.+||+.+++. . ........+.+++|+ ++++++++.++.|++||+ +++.+..+..+
T Consensus 254 ~l~~~--~~~v~~~d~~~~~~-----~------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 254 RAFGA--YNVLESFDLEKNAS-----I------KRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EEEEE--ESEEEEEETTTTEE-----E------EEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred EEEEe--CCeEEEEECCCCcC-----c------ceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 99888 79999999988654 2 222233467889998 468888899999999999 67777777654
Q ss_pred c
Q 003423 347 I 347 (821)
Q Consensus 347 ~ 347 (821)
.
T Consensus 321 ~ 321 (337)
T 1pby_B 321 G 321 (337)
T ss_dssp G
T ss_pred C
Confidence 3
No 147
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.73 E-value=4.1e-16 Score=176.79 Aligned_cols=267 Identities=12% Similarity=0.026 Sum_probs=185.4
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEe-ec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLA-GS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~-g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~ 93 (821)
...+|.+++|+ || +++|+. +. ++.+.||++++++.. ++..++...+..+.|+|+ .++++
T Consensus 20 ~~~~~~~~~~~--~D----G~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd------------~~l~~ 80 (582)
T 3o4h_A 20 IAVEKYSLQGV--VD----GDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG------------RVILV 80 (582)
T ss_dssp HHSCEEEEEEE--ET----TTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS------------EEEEE
T ss_pred hccchheeecC--CC----CCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC------------eEEEE
Confidence 34689999999 99 566665 44 899999999777654 344334346888888844 23333
Q ss_pred Ec----CCeEEEEEEee--cCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCE-EEEEECCCcEEEEEccC
Q 003423 94 FG----EKRVKLFELNF--ELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRS-LAIGCSDNSIRVWDISN 166 (821)
Q Consensus 94 ~g----~~~v~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~-l~t~~~d~~i~iwd~~~ 166 (821)
.. +...++|.+.. .. ... .+..+. .+...+|+| +++. +++...++.+.+||+.+
T Consensus 81 ~~~~~g~~~~~l~~~~~~~~g--------------~~~-~l~~~~-~~~~~~~s~---dg~~~~~~s~~~~~~~l~d~~~ 141 (582)
T 3o4h_A 81 RDVSKGAEQHALFKVNTSRPG--------------EEQ-RLEAVK-PMRILSGVD---TGEAVVFTGATEDRVALYALDG 141 (582)
T ss_dssp EECSTTSCCEEEEEEETTSTT--------------CCE-ECTTSC-SBEEEEEEE---CSSCEEEEEECSSCEEEEEEET
T ss_pred eccCCCCcceEEEEEeccCCC--------------ccc-cccCCC-CceeeeeCC---CCCeEEEEecCCCCceEEEccC
Confidence 22 46778888875 21 111 222222 234568888 7753 33334445566999998
Q ss_pred CceeEEEccCcceeEEEEeeccCCccCeEEEEEeeC----CEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccc
Q 003423 167 SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY----NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (821)
Q Consensus 167 ~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (821)
++.......+. ++..+ +||+.+|++++.+ +.|++||+.
T Consensus 142 g~~~~l~~~~~----~~~~~---spDG~~la~~~~~~~~~~~i~~~d~~------------------------------- 183 (582)
T 3o4h_A 142 GGLRELARLPG----FGFVS---DIRGDLIAGLGFFGGGRVSLFTSNLS------------------------------- 183 (582)
T ss_dssp TEEEEEEEESS----CEEEE---EEETTEEEEEEEEETTEEEEEEEETT-------------------------------
T ss_pred CcEEEeecCCC----ceEEE---CCCCCEEEEEEEcCCCCeEEEEEcCC-------------------------------
Confidence 87654444443 33333 5899999988877 789999987
Q ss_pred ccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCC--eEEEEecccCcccCCCCceeeeceEEeccceeEEEEE-----
Q 003423 243 QHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR--SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC----- 315 (821)
Q Consensus 243 ~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~----- 315 (821)
.++. ..+.+|.+.+..++|+|||++|+++..|+ .|++||+.+++. ..+.+|...+..++
T Consensus 184 --~g~~-~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 249 (582)
T 3o4h_A 184 --SGGL-RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSV-----------EDLELPSKDFSSYRPTAIT 249 (582)
T ss_dssp --TCCC-EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE-----------EECCCSCSHHHHHCCSEEE
T ss_pred --CCCc-eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcE-----------EEccCCCcChhhhhhcccc
Confidence 3332 35678999999999999999999888888 899999988765 34445666665566
Q ss_pred ---Ec--CCEEEEEeCCCeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCc---EEEEEcC
Q 003423 316 ---LT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA---IKVHQFQ 378 (821)
Q Consensus 316 ---~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~---I~iwd~~ 378 (821)
|+ +..+++++.|+++++|++ |+... ...+ .+.+++|+ +++++++++.+.. +.+|+..
T Consensus 250 ~~~~spdg~~~~~~~~~g~~~l~~~-g~~~~---~~~~-~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 250 WLGYLPDGRLAVVARREGRSAVFID-GERVE---APQG-NHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEECTTSCEEEEEEETTEEEEEET-TEEEC---CCSS-EEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred ceeEcCCCcEEEEEEcCCcEEEEEE-CCeec---cCCC-ceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 88 468889999999999999 76554 2334 58899999 9999988887754 5555543
No 148
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.73 E-value=1.9e-16 Score=184.96 Aligned_cols=283 Identities=9% Similarity=0.045 Sum_probs=185.7
Q ss_pred CCCCCcceeecccee-------ee---eeEEEEEeccCCCCCCcceEEeecC----------CeEEEEECCCCeeeeEEE
Q 003423 2 GKKDLSEWRLDVGQY-------LG---EISALCFVHLPSHLSSLPFLLAGSG----------SQVLLYDLEAGTLIRPFQ 61 (821)
Q Consensus 2 ~~~~i~~w~~~~~~~-------~~---~Vt~l~~~~~p~~~~~~~~l~~g~~----------~~i~iwd~~t~~~~~~~~ 61 (821)
.|++|++||+.+++. .. .|.+++|| || +++|+.+.+ +.|.+||+.+++. ..+.
T Consensus 35 ~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~S--pD----g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~ 107 (723)
T 1xfd_A 35 QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEIS--PD----REYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLD 107 (723)
T ss_dssp SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEEC--TT----SSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECC
T ss_pred CCCCEEEEECCCCcEEEEeccccccccccceEEEC--CC----CCEEEEEecCccceeecceeeEEEEECCCCce-Eecc
Confidence 578999999998861 11 38999999 99 667766543 7899999999876 3333
Q ss_pred eec--cccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCC--------
Q 003423 62 VFH--GIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL-------- 131 (821)
Q Consensus 62 ~~~--~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------- 131 (821)
... ...+..+.|+|++ ..++...++.|.+|++..+. .......+
T Consensus 108 ~~~~~~~~~~~~~~SPdG-----------~~la~~~~~~i~~~~~~~g~---------------~~~~~~~~~~~~~~~g 161 (723)
T 1xfd_A 108 PPEVSNAKLQYAGWGPKG-----------QQLIFIFENNIYYCAHVGKQ---------------AIRVVSTGKEGVIYNG 161 (723)
T ss_dssp CTTCCSCCCSBCCBCSST-----------TCEEEEETTEEEEESSSSSC---------------CEEEECCCBTTTEEEE
T ss_pred CCccccccccccEECCCC-----------CEEEEEECCeEEEEECCCCc---------------eEEEecCCCCCceECc
Confidence 221 1236778888653 36666667899999987542 11112222
Q ss_pred -CC---------cEEEEEEeecCCCCCEEEEEECCC----------------------------------cEEEEEccCC
Q 003423 132 -SH---------WVFDVCFLKVCNGNRSLAIGCSDN----------------------------------SIRVWDISNS 167 (821)
Q Consensus 132 -~~---------~I~~~~~~~~~~~~~~l~t~~~d~----------------------------------~i~iwd~~~~ 167 (821)
.+ .+.+++|+| +|+.|++++.|+ .|++||+.++
T Consensus 162 ~~~~v~~ee~~~~~~~~~~Sp---Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~ 238 (723)
T 1xfd_A 162 LSDWLYEEEILKTHIAHWWSP---DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP 238 (723)
T ss_dssp ECCHHHHHTTSSSSEEEEECT---TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS
T ss_pred ccceeEEEEeccCcceEEECC---CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC
Confidence 22 237899999 999999887553 7999999988
Q ss_pred ceeEEEccCc-----ceeEEEEeeccCCccCeEEEEEee----CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceee
Q 003423 168 SIILEVHSPE-----RCLLYSMKLWGDNLEALRIASGTI----YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (821)
Q Consensus 168 ~~~~~~~~~~-----~~~~~s~~~~~~s~~~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (821)
+....+..+. ...+.++.| +||+.++++... +..|.+||+.
T Consensus 239 ~~~~~l~~~~~~~~~~~~~~~~~~---SpDg~~l~~~~~~~~~~~~i~~~d~~--------------------------- 288 (723)
T 1xfd_A 239 THDLEMMPPDDPRMREYYITMVKW---ATSTKVAVTWLNRAQNVSILTLCDAT--------------------------- 288 (723)
T ss_dssp CCCEECCCCCCGGGSSEEEEEEEE---SSSSEEEEEEEETTSCEEEEEEEETT---------------------------
T ss_pred ceeEEeeCCccCCCccceeEEEEE---eCCCeEEEEEEcCCCCeEEEEEEeCC---------------------------
Confidence 7666665442 345666666 689988877654 3579999987
Q ss_pred ecccccceeeEEEEe-cCCCcEE----EEEEcCCCCEEEE--EeCCC------eEEEEe-cccCc---ccCCCCceeeec
Q 003423 239 LQDQQHTAVNLFRLV-GHEGSIF----RIEWSSCGSKLVS--VSDDR------SARIWE-VRAEY---WKDSDSIEEVGS 301 (821)
Q Consensus 239 ~~~~~~~~~~~~~~~-~h~~~I~----~l~~s~~~~~l~s--~s~Dg------~i~iwd-~~~~~---~~~~~~~~~~~~ 301 (821)
.++....+. .|.+.+. .++|+|||+.|+. ...|+ .|.+|| ...+. .
T Consensus 289 ------~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~----------- 351 (723)
T 1xfd_A 289 ------TGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNI----------- 351 (723)
T ss_dssp ------TCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCC-----------
T ss_pred ------CCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccce-----------
Confidence 333333333 3445443 7899999997764 45677 466666 33333 2
Q ss_pred eEEeccceeEEE-EEEc--CCEEEEEeCC---CeEEEEcC--CCc-eeeEeec---ccCCCeEEEEEecCCCEEEEEeC
Q 003423 302 SVLYGHNARVWD-CCLT--DSFIITAGED---CTCRVWGS--DGK-QLKMIKE---HIGRGIWRCLYDSLSSLLVTAGF 368 (821)
Q Consensus 302 ~~~~~h~~~i~~-v~~~--~~~l~s~~~d---g~i~iwd~--~~~-~~~~~~~---h~~~~i~~l~~~~~~~~l~tg~~ 368 (821)
..+..+...+.. ++|+ ++.|+..+.+ +.+++|++ .+. ....+.. |.. .+..++|+|++++|+....
T Consensus 352 ~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 352 QSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENC-TYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp CBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSC-CCCEEEECTTSSEEEEECC
T ss_pred eEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCC-CeEEEEECCCCCEEEEEcc
Confidence 133333333443 6887 4677655544 88999998 332 3444443 444 5889999999998876543
No 149
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.72 E-value=1.7e-15 Score=163.73 Aligned_cols=208 Identities=12% Similarity=0.108 Sum_probs=150.3
Q ss_pred CcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc----------eeEEEc----cCcceeEEEEeeccCCccCeEEE-
Q 003423 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS----------IILEVH----SPERCLLYSMKLWGDNLEALRIA- 197 (821)
Q Consensus 133 ~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~----------~~~~~~----~~~~~~~~s~~~~~~s~~~~~l~- 197 (821)
..+..+++++ ++.++++++.|+ +++|+..... .+.... .+....+.+++| ++++.+|+
T Consensus 37 ~~~n~lavs~---~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---spdg~~lav 109 (434)
T 2oit_A 37 ERSSLLAVSN---KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLAL---SCDNLTLSA 109 (434)
T ss_dssp SCCBCEEEET---TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEE---CTTSCEEEE
T ss_pred CCccEEEEec---CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEE---cCCCCEEEE
Confidence 4578899999 899999999887 9998764210 111110 112234677777 67889999
Q ss_pred ---EEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCC-CCEEEE
Q 003423 198 ---SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC-GSKLVS 273 (821)
Q Consensus 198 ---sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~-~~~l~s 273 (821)
+|+.|+.|++||+....... . . .......+..+.+|.+.|.+++|+|+ +++|++
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~----~---------~---------~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las 167 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEA----K---------Q---------QKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAV 167 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTT----C---------S---------SCCCSEEEECCCSGGGSEEEEEECSSCTTEEEE
T ss_pred EEeccCCCceEEEEEccccccCC----c---------C---------CcceeeeeeccCCCCCceEEEEECCCCCCEEEE
Confidence 78889999999987210000 0 0 00011234556789999999999998 789999
Q ss_pred EeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcCCCceeeEeecccC---
Q 003423 274 VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIG--- 348 (821)
Q Consensus 274 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~--- 348 (821)
++.||+|++||++++.. . ....+|...|++++|+ +++|++++.||+|++||.+++....+..|..
T Consensus 168 ~s~Dg~v~iwD~~~~~~-----~-----~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~ 237 (434)
T 2oit_A 168 CLADGSIAVLQVTETVK-----V-----CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYES 237 (434)
T ss_dssp EETTSCEEEEEESSSEE-----E-----EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCT
T ss_pred EECCCeEEEEEcCCCcc-----e-----eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCC
Confidence 99999999999998643 2 3566789999999999 5899999999999999998766666654422
Q ss_pred ---CCeEEEEEecCCCEEEE-EeCCCc------EEEEEcCC
Q 003423 349 ---RGIWRCLYDSLSSLLVT-AGFDSA------IKVHQFQA 379 (821)
Q Consensus 349 ---~~i~~l~~~~~~~~l~t-g~~dg~------I~iwd~~~ 379 (821)
..|.+++|++++.++++ ...||. +++|++..
T Consensus 238 ~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 238 DHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp TSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred CCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 15889999998877754 334433 88999964
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.72 E-value=1.7e-14 Score=151.88 Aligned_cols=262 Identities=11% Similarity=0.099 Sum_probs=168.6
Q ss_pred CCCCcceeecc--ce--------eeeeeEEEEEeccCCCCCCcceEEeec---CCeEEEEECCCCee--eeEEEeecccc
Q 003423 3 KKDLSEWRLDV--GQ--------YLGEISALCFVHLPSHLSSLPFLLAGS---GSQVLLYDLEAGTL--IRPFQVFHGIR 67 (821)
Q Consensus 3 ~~~i~~w~~~~--~~--------~~~~Vt~l~~~~~p~~~~~~~~l~~g~---~~~i~iwd~~t~~~--~~~~~~~~~~~ 67 (821)
++.|.+|++.. ++ +...+..++|+ || +++++++. ++.|.+||+.+++. +..+.. ....
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~s--pd----g~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~-~~~~ 87 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALS--AK----DCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA-PGTP 87 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEEC--TT----CEEEEEEEETTEEEEEEEEEETTEEEEEEEEEE-ESCC
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEc--cC----CeEEEEEecCCCceEEEEEecCCcEEEeeeeec-CCCC
Confidence 44566777654 33 23456789999 99 45555554 48999999987763 333332 3446
Q ss_pred EEeEEeccccCCCCCCccceeeEEEEE-cCCeEEEEEEeecCCCCCCCCCccccccceeeeccC---------CCCcEEE
Q 003423 68 LHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR---------LSHWVFD 137 (821)
Q Consensus 68 i~~i~~~~~~~~~~~~~~~~~~~l~~~-g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------h~~~I~~ 137 (821)
+.+++++|++ ..++++. .++.+++|++.... ....+..+.. +...+.+
T Consensus 88 p~~~a~spdg----------~~l~~~~~~~~~v~v~~~~~~g------------~~~~~~~~~~~~~~p~~~~~~~~~~~ 145 (347)
T 3hfq_A 88 PAYVAVDEAR----------QLVYSANYHKGTAEVMKIAADG------------ALTLTDTVQHSGHGPRPEQDGSHIHY 145 (347)
T ss_dssp CSEEEEETTT----------TEEEEEETTTTEEEEEEECTTS------------CEEEEEEEECCCCCSSTTCSSCCEEE
T ss_pred CEEEEECCCC----------CEEEEEeCCCCEEEEEEeCCCC------------CeeecceeecCCCCCCccccCCCceE
Confidence 8889999664 2344454 57999999996321 0122222211 2345899
Q ss_pred EEEeecCCCCCEEEEEECCCcEEEEEcc-CCcee--EEEccCcceeEEEEeeccCCccCeEEEE-EeeCCEEEEEEcccC
Q 003423 138 VCFLKVCNGNRSLAIGCSDNSIRVWDIS-NSSII--LEVHSPERCLLYSMKLWGDNLEALRIAS-GTIYNEIIVWKVDWE 213 (821)
Q Consensus 138 ~~~~~~~~~~~~l~t~~~d~~i~iwd~~-~~~~~--~~~~~~~~~~~~s~~~~~~s~~~~~l~s-g~~dg~i~vwd~~~~ 213 (821)
++|+| +++++++...++.|.+||+. +++.. ..+..+.......+.| +|++.++++ +..++.|.+|++...
T Consensus 146 ~~~sp---dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~---spdg~~l~v~~~~~~~v~v~~~~~~ 219 (347)
T 3hfq_A 146 TDLTP---DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF---SPDGQYAFLAGELSSQIASLKYDTQ 219 (347)
T ss_dssp EEECT---TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE---CTTSSEEEEEETTTTEEEEEEEETT
T ss_pred EEECC---CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE---CCCCCEEEEEeCCCCEEEEEEecCC
Confidence 99999 99966666678899999998 45432 2223333323445555 688885554 567899999998710
Q ss_pred CcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCC------CcEEEEEEcCCCCEE-EEEeCCCeEEEEecc
Q 003423 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE------GSIFRIEWSSCGSKL-VSVSDDRSARIWEVR 286 (821)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------~~I~~l~~s~~~~~l-~s~s~Dg~i~iwd~~ 286 (821)
......+..+.... ..+.+++|+|+|++| ++...++.|.+|++.
T Consensus 220 -----------------------------~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 220 -----------------------------TGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp -----------------------------TTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred -----------------------------CCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 00122233333322 458899999999977 566778999999997
Q ss_pred cCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCC-CeEEEEcC
Q 003423 287 AEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED-CTCRVWGS 335 (821)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~d-g~i~iwd~ 335 (821)
.... .+.+ ..+..+...+.+++|+ +++|++++.+ +.+.+|++
T Consensus 271 ~~g~-----~~~~--~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 271 ADGH-----LTLI--QQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp GGGC-----EEEE--EEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCc-----EEEe--EEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence 4322 2222 3455556678899998 4678777754 89999955
No 151
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.71 E-value=3.7e-15 Score=157.34 Aligned_cols=240 Identities=8% Similarity=-0.012 Sum_probs=169.3
Q ss_pred ccEEeEEeccccCCCCCCccceeeEEEEE-c------CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEE
Q 003423 66 IRLHGISCNFINCTEGSVSTRVTFEVALF-G------EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (821)
Q Consensus 66 ~~i~~i~~~~~~~~~~~~~~~~~~~l~~~-g------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~ 138 (821)
..+.++.+++++ + .++++. + ++.|.+||.... +....+.. ...+..+
T Consensus 41 ~~~~~~~~s~dg-------~---~l~~~~~~~~~~~~~~~v~~~d~~~~---------------~~~~~~~~-~~~~~~~ 94 (353)
T 3vgz_A 41 KGAYEMAYSQQE-------N---ALWLATSQSRKLDKGGVVYRLDPVTL---------------EVTQAIHN-DLKPFGA 94 (353)
T ss_dssp SSEEEEEEETTT-------T---EEEEEECCCTTTEESEEEEEECTTTC---------------CEEEEEEE-SSCCCSE
T ss_pred cCccceEECCCC-------C---EEEEEcCCCcCCCCCccEEEEcCCCC---------------eEEEEEec-CCCcceE
Confidence 357889999653 1 343333 2 568999987643 23333332 2347789
Q ss_pred EEeecCCCCCEEEEE-ECCCcEEEEEccCCceeEEEccCcce--------eEEEEeeccCCccCeEEEEEe--eCCEEEE
Q 003423 139 CFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIILEVHSPERC--------LLYSMKLWGDNLEALRIASGT--IYNEIIV 207 (821)
Q Consensus 139 ~~~~~~~~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~~~~~--------~~~s~~~~~~s~~~~~l~sg~--~dg~i~v 207 (821)
+|+| +++.++++ ..++.|.+||..+++.+..+..+... ....+.+ ++++.++++++ .++.|.+
T Consensus 95 ~~s~---dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~dg~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 95 TINN---TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVA---DDATNTVYISGIGKESVIWV 168 (353)
T ss_dssp EEET---TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEE---ETTTTEEEEEEESSSCEEEE
T ss_pred EECC---CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEE---CCCCCEEEEEecCCCceEEE
Confidence 9999 99865554 55799999999999988777654321 1344555 47777776665 4789999
Q ss_pred EEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeccc
Q 003423 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (821)
Q Consensus 208 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~ 287 (821)
||.. ..+....+..+...+.+++|+|++++|++++.++.|.+||..+
T Consensus 169 ~d~~---------------------------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~ 215 (353)
T 3vgz_A 169 VDGG---------------------------------NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTAD 215 (353)
T ss_dssp EETT---------------------------------TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTT
T ss_pred EcCC---------------------------------CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 9998 5566666665666788999999999999999999999999988
Q ss_pred CcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEe-CCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEE
Q 003423 288 EYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG-EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLL 363 (821)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~-~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l 363 (821)
++. ...+.. ...++...+.+++|+ +++++.++ .++.|.+||. +++.+..+..... ..++|+|+++++
T Consensus 216 ~~~-----~~~~~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~s~dg~~l 286 (353)
T 3vgz_A 216 NKI-----LSRKKL-LDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES---LAVLFNPARNEA 286 (353)
T ss_dssp TEE-----EEEEEC-CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC---CCEEEETTTTEE
T ss_pred CeE-----EEEEEc-CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC---ceEEECCCCCEE
Confidence 765 321100 111345567889998 46566555 4599999999 6777777765432 468999999966
Q ss_pred EEEe-CCCcEEEEEcCC
Q 003423 364 VTAG-FDSAIKVHQFQA 379 (821)
Q Consensus 364 ~tg~-~dg~I~iwd~~~ 379 (821)
++++ .++.|.+||..+
T Consensus 287 ~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 287 YVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp EEEETTTTEEEEEETTT
T ss_pred EEEECCCCeEEEEECCC
Confidence 6555 689999999854
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.71 E-value=2.9e-15 Score=161.80 Aligned_cols=159 Identities=10% Similarity=-0.017 Sum_probs=117.4
Q ss_pred cCCCcEEEEEEcCCCCEEE----EEeCCCeEEEEecccCcccC---CCCceeeeceEEeccceeEEEEEEcC---CEEEE
Q 003423 254 GHEGSIFRIEWSSCGSKLV----SVSDDRSARIWEVRAEYWKD---SDSIEEVGSSVLYGHNARVWDCCLTD---SFIIT 323 (821)
Q Consensus 254 ~h~~~I~~l~~s~~~~~l~----s~s~Dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~h~~~i~~v~~~~---~~l~s 323 (821)
.|.+.|.+++|+|++++|+ +++.|++|++||+.+..... ......+ ..+.+|...|.+++|++ .+|++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~h~~~V~~v~~~p~~~~~las 167 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYH--KLLKDAGGMVIDMKWNPTVPSMVAV 167 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEE--ECCCSGGGSEEEEEECSSCTTEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeee--eccCCCCCceEEEEECCCCCCEEEE
Confidence 4778899999999999999 88999999999997651100 0001112 35667999999999984 68999
Q ss_pred EeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEE
Q 003423 324 AGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFS 402 (821)
Q Consensus 324 ~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (821)
++.||+|++||+ .+..+....+|.. .|.+++|+|+|++|++|+.||.|++||+++.....+..+
T Consensus 168 ~s~Dg~v~iwD~~~~~~~~~~~~~~~-~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~-------------- 232 (434)
T 2oit_A 168 CLADGSIAVLQVTETVKVCATLPSTV-AVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCP-------------- 232 (434)
T ss_dssp EETTSCEEEEEESSSEEEEEEECGGG-CEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCC--------------
T ss_pred EECCCeEEEEEcCCCcceeeccCCCC-ceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCC--------------
Confidence 999999999999 5555556667776 699999999999999999999999999863211111111
Q ss_pred eecCCcccceeccCCCCcceEEEEeecCCeEEEEec
Q 003423 403 IKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN 438 (821)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~ 438 (821)
.. ....+...+.+++|++++.++++..
T Consensus 233 ----~~-----~~~~~~~~v~~v~w~~~~~~l~~~~ 259 (434)
T 2oit_A 233 ----PF-----YESDHPVRVLDVLWIGTYVFAIVYA 259 (434)
T ss_dssp ----TT-----CCTTSCEEEEEEEEEETTEEEEEEE
T ss_pred ----cc-----cCCCCceeEEEEEEecCceEEEEEc
Confidence 00 0011234689999999988876544
No 153
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.70 E-value=1.9e-14 Score=150.32 Aligned_cols=272 Identities=7% Similarity=0.048 Sum_probs=169.2
Q ss_pred CCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEee-CCEEEEEEcccCCcccCCCCCCCc
Q 003423 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI-YNEIIVWKVDWEHVAPLLNSPEGN 225 (821)
Q Consensus 147 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~ 225 (821)
+..+++++.++.|.+||..+++.+..+..+.... .+.+ ++++.++++++. ++.|.+||..
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~~~---s~dg~~l~~~~~~~~~i~~~d~~-------------- 70 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV--DTAI---TSDCSNVVVTSDFCQTLVQIETQ-------------- 70 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE--EEEE---CSSSCEEEEEESTTCEEEEEECS--------------
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEccCCcc--eEEE---cCCCCEEEEEeCCCCeEEEEECC--------------
Confidence 3456777889999999999999887776554433 5666 678876665555 8999999998
Q ss_pred ccCCCCCCcceeeecccccceee-EEEEecCCCcEEEEEEcCCCCEEEEEeCCC---eEEEEecccCcccCCCCceeeec
Q 003423 226 HAHGSSSDFKCFKLQDQQHTAVN-LFRLVGHEGSIFRIEWSSCGSKLVSVSDDR---SARIWEVRAEYWKDSDSIEEVGS 301 (821)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg---~i~iwd~~~~~~~~~~~~~~~~~ 301 (821)
.... ...+..+..+..+++|+|++++|+++..++ .|.+||+.+++. .
T Consensus 71 -------------------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~-----~----- 121 (331)
T 3u4y_A 71 -------------------LEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF-----I----- 121 (331)
T ss_dssp -------------------SSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE-----E-----
T ss_pred -------------------CCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe-----E-----
Confidence 3333 555666777766699999999999555553 899999988755 2
Q ss_pred eEEeccceeEEEEEEcC--CEE-EEEeCCCe-EEEEcCC--Ccee---eEeecccCCCeEEEEEecCCCEEEEE-eCCCc
Q 003423 302 SVLYGHNARVWDCCLTD--SFI-ITAGEDCT-CRVWGSD--GKQL---KMIKEHIGRGIWRCLYDSLSSLLVTA-GFDSA 371 (821)
Q Consensus 302 ~~~~~h~~~i~~v~~~~--~~l-~s~~~dg~-i~iwd~~--~~~~---~~~~~h~~~~i~~l~~~~~~~~l~tg-~~dg~ 371 (821)
....+.....+++|++ +++ ++...++. +.+|+++ +... ........ ....++|+|++++++.+ ..++.
T Consensus 122 -~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~~~~~~~ 199 (331)
T 3u4y_A 122 -STIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGT-RPFNITFTPDGNFAFVANLIGNS 199 (331)
T ss_dssp -EEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSS-SEEEEEECTTSSEEEEEETTTTE
T ss_pred -EEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCC-CccceEECCCCCEEEEEeCCCCe
Confidence 2222334468999984 444 45556688 9999983 3221 11112223 57899999999966555 46899
Q ss_pred EEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCC
Q 003423 372 IKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMD 451 (821)
Q Consensus 372 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~ 451 (821)
|.+||+....... .+..+. ....+..++|+|+++++..+..+. ..+.+++..
T Consensus 200 v~v~d~~~~~~~~--------------~~~~~~-------------~~~~~~~~~~spdg~~l~v~~~~~-~~i~~~d~~ 251 (331)
T 3u4y_A 200 IGILETQNPENIT--------------LLNAVG-------------TNNLPGTIVVSRDGSTVYVLTEST-VDVFNFNQL 251 (331)
T ss_dssp EEEEECSSTTSCE--------------EEEEEE-------------CSSCCCCEEECTTSSEEEEECSSE-EEEEEEETT
T ss_pred EEEEECCCCcccc--------------eeeecc-------------CCCCCceEEECCCCCEEEEEEcCC-CEEEEEECC
Confidence 9999985421100 000010 113467899999998665554322 123345544
Q ss_pred cceeeEeeeccCC-----cce---EEEeccCCCCCCCCCCCcEEE-EecCCccEEEEEecCC
Q 003423 452 SVNWNKILQVSEG-----MPI---ICMDLLSNEPKYPCGIDDWVA-LGDGKGNMTIVRVVGD 504 (821)
Q Consensus 452 ~~~~~~~~~~~~~-----~~i---~~~~~~~~~~~~s~~~~~~l~-~g~~~g~i~i~~~~~~ 504 (821)
+.+...+...... .+. ..+.+ ++++++++ ++..++.|.+|++...
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 252 SGTLSFVKSFGHGLLIDPRPLFGANQMAL--------NKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp TTEEEEEEEEECCCCCCCGGGTTCCCEEE--------CTTSSEEEEEETTTTEEEEEETTSC
T ss_pred CCceeeecccccccccCCCCcccccceEE--------CCCCCEEEEecCCCCcEEEEEecCC
Confidence 4443222111110 110 11222 24556665 4555679999998753
No 154
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.69 E-value=3.8e-15 Score=168.84 Aligned_cols=233 Identities=10% Similarity=-0.037 Sum_probs=162.1
Q ss_pred eccccEEeEEeccccCCCCCCccceeeEEEEEc-CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCC-CcEEEEEE
Q 003423 63 FHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS-HWVFDVCF 140 (821)
Q Consensus 63 ~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g-~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~I~~~~~ 140 (821)
....+|.++.++|++ + .++.+.. +++++||+++.+ ....+..|. ..+..++|
T Consensus 19 ~~~~~~~~~~~~~DG-------~---~la~~s~~~g~~~lw~~~~g----------------~~~~lt~~~~~~~~~~~~ 72 (582)
T 3o4h_A 19 LIAVEKYSLQGVVDG-------D---KLLVVGFSEGSVNAYLYDGG----------------ETVKLNREPINSVLDPHY 72 (582)
T ss_dssp HHHSCEEEEEEEETT-------T---EEEEEEEETTEEEEEEEETT----------------EEEECCSSCCSEECEECT
T ss_pred HhccchheeecCCCC-------C---eEEEEEccCCceeEEEEcCC----------------CcEeeecccccccccccC
Confidence 334579999999664 2 3433444 899999998532 234455555 68999999
Q ss_pred eecCCCCCEEEEEEC---CCcEEEEEccC--CceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCc
Q 003423 141 LKVCNGNRSLAIGCS---DNSIRVWDISN--SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHV 215 (821)
Q Consensus 141 ~~~~~~~~~l~t~~~---d~~i~iwd~~~--~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~ 215 (821)
+| + +++++++. +...++|.+.. ......+.........+... ++++..++++..++ +.+||+.
T Consensus 73 sp---d-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~s~---dg~~~~~~s~~~~~-~~l~d~~---- 140 (582)
T 3o4h_A 73 GV---G-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVD---TGEAVVFTGATEDR-VALYALD---- 140 (582)
T ss_dssp TC---S-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSCSBEEEEEEE---CSSCEEEEEECSSC-EEEEEEE----
T ss_pred CC---C-eEEEEeccCCCCcceEEEEEeccCCCccccccCCCCceeeeeCC---CCCeEEEEecCCCC-ceEEEcc----
Confidence 99 8 77887775 45567776654 22222444333322223221 23344555555544 4599988
Q ss_pred ccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCC----CeEEEEecccCccc
Q 003423 216 APLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD----RSARIWEVRAEYWK 291 (821)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~D----g~i~iwd~~~~~~~ 291 (821)
.++...... +.. .+++|+|||++|++++.| +.|++||+.+++.
T Consensus 141 -----------------------------~g~~~~l~~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~- 187 (582)
T 3o4h_A 141 -----------------------------GGGLRELAR-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL- 187 (582)
T ss_dssp -----------------------------TTEEEEEEE-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC-
T ss_pred -----------------------------CCcEEEeec-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc-
Confidence 333333323 333 789999999999988887 7899999988765
Q ss_pred CCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCC--eEEEEcCCCceeeEeecccCCCeEEEE--------EecC
Q 003423 292 DSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC--TCRVWGSDGKQLKMIKEHIGRGIWRCL--------YDSL 359 (821)
Q Consensus 292 ~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg--~i~iwd~~~~~~~~~~~h~~~~i~~l~--------~~~~ 359 (821)
..+..|...+..++|+ ++.|+++..++ .|.+||+++.....+..|.. .+..++ |+|+
T Consensus 188 ----------~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spd 256 (582)
T 3o4h_A 188 ----------RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSK-DFSSYRPTAITWLGYLPD 256 (582)
T ss_dssp ----------EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCS-HHHHHCCSEEEEEEECTT
T ss_pred ----------eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCc-ChhhhhhccccceeEcCC
Confidence 5777888899999999 47888888888 89999995433336666655 466666 9999
Q ss_pred CCEEEEEeCCCcEEEEEc
Q 003423 360 SSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 360 ~~~l~tg~~dg~I~iwd~ 377 (821)
|.++++++.|+.+++|++
T Consensus 257 g~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 257 GRLAVVARREGRSAVFID 274 (582)
T ss_dssp SCEEEEEEETTEEEEEET
T ss_pred CcEEEEEEcCCcEEEEEE
Confidence 999999999999999998
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.68 E-value=8.7e-16 Score=179.00 Aligned_cols=308 Identities=8% Similarity=0.007 Sum_probs=179.1
Q ss_pred EEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeecc--ccEEeEEeccccCCCCCCccceeeEEEEEc---
Q 003423 21 SALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHG--IRLHGISCNFINCTEGSVSTRVTFEVALFG--- 95 (821)
Q Consensus 21 t~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~--~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g--- 95 (821)
..++|+ || +.+++++.++.|++||+.+++....+..+.. ..+..++|+|++ + .++.+..
T Consensus 19 ~~~~~s--~d----g~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg-------~---~la~~~~~~~ 82 (719)
T 1z68_A 19 FFPNWI--SG----QEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDR-------Q---FVYLESDYSK 82 (719)
T ss_dssp CCCEES--SS----SEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTS-------S---EEEEEEEEEE
T ss_pred CccEEC--CC----CeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCC-------C---eEEEEecCce
Confidence 377899 99 5788888899999999999987665553221 138889999664 2 3333333
Q ss_pred ------CCeEEEEEEeecCCCCCCCCCcccccccee--eeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCC
Q 003423 96 ------EKRVKLFELNFELSPNSQYQPETCVNLSLV--QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (821)
Q Consensus 96 ------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~ 167 (821)
++.|++||+..+. .. ..+ ...+.+++||| +|+.||.+. ++.|++||+.++
T Consensus 83 ~~~~s~~~~i~~~d~~~g~---------------~~~~~~l---~~~~~~~~~SP---DG~~la~~~-~~~i~~~~~~~g 140 (719)
T 1z68_A 83 LWRYSYTATYYIYDLSNGE---------------FVRGNEL---PRPIQYLCWSP---VGSKLAYVY-QNNIYLKQRPGD 140 (719)
T ss_dssp CSSSCEEEEEEEEETTTTE---------------ECCSSCC---CSSBCCEEECS---STTCEEEEE-TTEEEEESSTTS
T ss_pred eEEeecceEEEEEECCCCc---------------cccceec---CcccccceECC---CCCEEEEEE-CCeEEEEeCCCC
Confidence 5899999987542 10 112 25688899999 999999886 789999999888
Q ss_pred ceeEEEccCcceeE-----------------EEEeeccCCccCeEEEEEeeC-CEEEEEEcccCCcccCCC-CCCCcccC
Q 003423 168 SIILEVHSPERCLL-----------------YSMKLWGDNLEALRIASGTIY-NEIIVWKVDWEHVAPLLN-SPEGNHAH 228 (821)
Q Consensus 168 ~~~~~~~~~~~~~~-----------------~s~~~~~~s~~~~~l~sg~~d-g~i~vwd~~~~~~~~~~~-~~~~~~~~ 228 (821)
+............+ .++.| +||+..||.++.| +.+.+|.+.......... ........
T Consensus 141 ~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w---SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~ 217 (719)
T 1z68_A 141 PPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW---SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKA 217 (719)
T ss_dssp CCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE---CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBT
T ss_pred CcEEEecCCCcCCeEcccccceeeeecccCcccEEE---CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCC
Confidence 76432222221111 13444 6999999998765 322333221000000000 00000000
Q ss_pred CCCCCcceeeecccccceee-----E---EEEecCCCcEEEEEEcCCCCEEEEEeCC----CeEEEEe----cccCcccC
Q 003423 229 GSSSDFKCFKLQDQQHTAVN-----L---FRLVGHEGSIFRIEWSSCGSKLVSVSDD----RSARIWE----VRAEYWKD 292 (821)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~-----~---~~~~~h~~~I~~l~~s~~~~~l~s~s~D----g~i~iwd----~~~~~~~~ 292 (821)
+.......+.+++.. .... + ..+.+|...+..++|+||++++++.... ..|.+|| +.+++.
T Consensus 218 g~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~-- 294 (719)
T 1z68_A 218 GAKNPVVRIFIIDTT-YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC-- 294 (719)
T ss_dssp TSCCCEEEEEEEESS-CHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC--
T ss_pred CCCCCeeEEEEEECC-CCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce--
Confidence 000000011111110 1111 0 1234688899999999998777774432 2488888 665543
Q ss_pred CCCceeeeceEEeccceeEE-----EEEEc--CCEEE--EEeCCC--eEEEEcCCCceeeEeecccCCCeEEEEEecCCC
Q 003423 293 SDSIEEVGSSVLYGHNARVW-----DCCLT--DSFII--TAGEDC--TCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSS 361 (821)
Q Consensus 293 ~~~~~~~~~~~~~~h~~~i~-----~v~~~--~~~l~--s~~~dg--~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~ 361 (821)
..... ....+|...+. .+.|+ ++.++ +...+| .|.+|++++.....+..+.. .+..+.+. +++
T Consensus 295 ---~~~~~-~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~-~v~~~~~~-d~~ 368 (719)
T 1z68_A 295 ---PKTQE-HIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKW-EAINIFRV-TQD 368 (719)
T ss_dssp ---CGGGE-EEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSS-CEEEEEEE-CSS
T ss_pred ---EEEEe-cccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCce-EEEEEEEE-eCC
Confidence 11000 00146666666 78888 34333 454565 56667775544566665554 47777777 777
Q ss_pred EEEEEeCC-----CcEEEEEcC
Q 003423 362 LLVTAGFD-----SAIKVHQFQ 378 (821)
Q Consensus 362 ~l~tg~~d-----g~I~iwd~~ 378 (821)
.|+..+.+ +..++|.++
T Consensus 369 ~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 369 SLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp EEEEEESCGGGCTTCBEEEEEE
T ss_pred EEEEEEecCCCCCceEEEEEEe
Confidence 77666654 888999874
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.67 E-value=1.5e-13 Score=145.41 Aligned_cols=275 Identities=11% Similarity=0.081 Sum_probs=169.2
Q ss_pred CCeEEEEEC--CCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcC----CeEEEEEEeecCCCCCCCCC
Q 003423 43 GSQVLLYDL--EAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE----KRVKLFELNFELSPNSQYQP 116 (821)
Q Consensus 43 ~~~i~iwd~--~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~----~~v~i~~~~~~~~~~~~~~~ 116 (821)
++.|.+|++ .+|++...... +...+..++|+|++ ..++++..+ +.+.+|+++....
T Consensus 26 ~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg----------~~l~~~~~~~~~~~~v~~~~~~~~~g------- 87 (361)
T 3scy_A 26 SKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADG----------KFVYSVNEFSKDQAAVSAFAFDKEKG------- 87 (361)
T ss_dssp CCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTS----------SEEEEEECCSSTTCEEEEEEEETTTT-------
T ss_pred CCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCC----------CEEEEEEccCCCCCcEEEEEEeCCCC-------
Confidence 467888866 56765443333 45567888888663 234444443 7999999985320
Q ss_pred ccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEE-CCCcEEEEEccCCceeEEE----c--cC-------cceeEE
Q 003423 117 ETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNSSIILEV----H--SP-------ERCLLY 182 (821)
Q Consensus 117 ~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~-~d~~i~iwd~~~~~~~~~~----~--~~-------~~~~~~ 182 (821)
.++.+.....+......+++ ++++|+++. .++.|.+|++.....+..+ . .. ......
T Consensus 88 ----~~~~~~~~~~~~~~p~~~~~-----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~ 158 (361)
T 3scy_A 88 ----TLHLLNTQKTMGADPCYLTT-----NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLH 158 (361)
T ss_dssp ----EEEEEEEEECSSSCEEEEEE-----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEE
T ss_pred ----cEEEeeEeccCCCCcEEEEE-----CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcce
Confidence 13445555555556666665 456666665 6889999999754332211 1 10 011234
Q ss_pred EEeeccCCccCeEEEEE-eeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccc-cce--eeEEEEecCCCc
Q 003423 183 SMKLWGDNLEALRIASG-TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ-HTA--VNLFRLVGHEGS 258 (821)
Q Consensus 183 s~~~~~~s~~~~~l~sg-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~h~~~ 258 (821)
++.+ +|++.+++++ ..++.|.+|++....... .. . ... ........+...
T Consensus 159 ~~~~---spdg~~l~~~~~~~~~v~v~~~~~~~~~~---~~--------------------~~l~~~~~~~~~~~~~~~~ 212 (361)
T 3scy_A 159 CVRI---TPDGKYLLADDLGTDQIHKFNINPNANAD---NK--------------------EKFLTKGTPEAFKVAPGSG 212 (361)
T ss_dssp EEEE---CTTSSEEEEEETTTTEEEEEEECTTCCTT---TC--------------------CCCEEEEEEEEEECCTTCC
T ss_pred EEEE---CCCCCEEEEEeCCCCEEEEEEEcCCCCcc---cc--------------------cceeecccccceecCCCCC
Confidence 5555 6888866554 458999999987210000 00 0 000 001112234556
Q ss_pred EEEEEEcCCCCEEEEEe-CCCeEEEEecccCcccCCCCceeeec-eEEeccceeEEEEEEc--CCEEEEEeC--CCeEEE
Q 003423 259 IFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGS-SVLYGHNARVWDCCLT--DSFIITAGE--DCTCRV 332 (821)
Q Consensus 259 I~~l~~s~~~~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~h~~~i~~v~~~--~~~l~s~~~--dg~i~i 332 (821)
+.+++|+|+|++|+.++ .++.|.+|++.++.. ..+.. .....+.....+++|+ +++|+++.. ++.+.+
T Consensus 213 ~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~------~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v 286 (361)
T 3scy_A 213 PRHLIFNSDGKFAYLINEIGGTVIAFRYADGML------DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAI 286 (361)
T ss_dssp EEEEEECTTSSEEEEEETTTCEEEEEEEETTEE------EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEE
T ss_pred CeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce------EEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEE
Confidence 78999999999887766 689999999986543 21110 1122333456889998 467766665 489999
Q ss_pred EcCC---Cc--eeeEeecccCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcC
Q 003423 333 WGSD---GK--QLKMIKEHIGRGIWRCLYDSLSSLLVTAG-FDSAIKVHQFQ 378 (821)
Q Consensus 333 wd~~---~~--~~~~~~~h~~~~i~~l~~~~~~~~l~tg~-~dg~I~iwd~~ 378 (821)
|+++ ++ .+..+.. +..+..++|+|+|++|++++ .++.|.+|+++
T Consensus 287 ~~~~~~~g~~~~~~~~~~--g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 287 FKVDETNGTLTKVGYQLT--GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EEECTTTCCEEEEEEEEC--SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred EEEcCCCCcEEEeeEecC--CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 9984 34 3333443 33578999999999888887 67899998774
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.64 E-value=4.4e-15 Score=173.03 Aligned_cols=301 Identities=10% Similarity=0.044 Sum_probs=188.4
Q ss_pred CCCCCcceeeccceee-------e---eeEEEEEeccCCCCCCcceEEeec----------CCeEEEEECCCCeeeeEEE
Q 003423 2 GKKDLSEWRLDVGQYL-------G---EISALCFVHLPSHLSSLPFLLAGS----------GSQVLLYDLEAGTLIRPFQ 61 (821)
Q Consensus 2 ~~~~i~~w~~~~~~~~-------~---~Vt~l~~~~~p~~~~~~~~l~~g~----------~~~i~iwd~~t~~~~~~~~ 61 (821)
.|++|++||+.+++.. . .|.+++|| || +++|+.+. ++.|++||+++++.+...+
T Consensus 34 ~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~S--pD----g~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~ 107 (719)
T 1z68_A 34 ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLS--PD----RQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE 107 (719)
T ss_dssp TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEEC--TT----SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC
T ss_pred CCCCEEEEEcCCCcEEEEEccccccccceeeEEEC--CC----CCeEEEEecCceeEEeecceEEEEEECCCCcccccee
Confidence 4789999999988711 1 28899999 99 66666654 4899999999998732111
Q ss_pred eeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcE------
Q 003423 62 VFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV------ 135 (821)
Q Consensus 62 ~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I------ 135 (821)
. . ..+..+.|+|++ ..++...++.|++|++..+...... . .......+.||.++|
T Consensus 108 l-~-~~~~~~~~SPDG-----------~~la~~~~~~i~~~~~~~g~~~~l~--~----~~~~~~v~~g~~~~v~~ee~~ 168 (719)
T 1z68_A 108 L-P-RPIQYLCWSPVG-----------SKLAYVYQNNIYLKQRPGDPPFQIT--F----NGRENKIFNGIPDWVYEEEML 168 (719)
T ss_dssp C-C-SSBCCEEECSST-----------TCEEEEETTEEEEESSTTSCCEECC--C----CCBTTTEEESSCCHHHHHHTT
T ss_pred c-C-cccccceECCCC-----------CEEEEEECCeEEEEeCCCCCcEEEe--c----CCCcCCeEcccccceeeeecc
Confidence 1 1 257888999664 3566667899999998654210000 0 000011223455554
Q ss_pred ---EEEEEeecCCCCCEEEEEECCC----------------------------------cEEEEEccCCcee--EEEcc-
Q 003423 136 ---FDVCFLKVCNGNRSLAIGCSDN----------------------------------SIRVWDISNSSII--LEVHS- 175 (821)
Q Consensus 136 ---~~~~~~~~~~~~~~l~t~~~d~----------------------------------~i~iwd~~~~~~~--~~~~~- 175 (821)
.+++|+| ||+.||+++.|. .|++||+.+++.. ..+..
T Consensus 169 ~~~~~~~wSP---DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 245 (719)
T 1z68_A 169 ATKYALWWSP---NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVP 245 (719)
T ss_dssp CSSCCEEECT---TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCC
T ss_pred cCcccEEECC---CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCC
Confidence 5899999 999999987652 7889999887652 22321
Q ss_pred ----CcceeEEEEeeccCCccCeEEEEEeeC----CEEEEEE----cccCCcccCCCCCCCcccCCCCCCcceeeecccc
Q 003423 176 ----PERCLLYSMKLWGDNLEALRIASGTIY----NEIIVWK----VDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (821)
Q Consensus 176 ----~~~~~~~s~~~~~~s~~~~~l~sg~~d----g~i~vwd----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (821)
.....+.++.+ +||+.++++.... ..|.+|| ..
T Consensus 246 ~~~~~~~~~~~~~~~---SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~-------------------------------- 290 (719)
T 1z68_A 246 AMIASSDYYFSWLTW---VTDERVCLQWLKRVQNVSVLSICDFREDWQ-------------------------------- 290 (719)
T ss_dssp HHHHTSCEEEEEEEE---SSSSEEEEEEEESSTTEEEEEEEEECSSSS--------------------------------
T ss_pred ccCCCCcceEEEeEE---eCCCeEEEEEeccccCeEEEEEEcccCCCC--------------------------------
Confidence 23345666766 6788777775432 2488888 55
Q ss_pred cceeeEEEE----ecCCCcEE-----EEEEcCCCCEEE--EEeCCC--eEEEEecccCcccCCCCceeeeceEEecccee
Q 003423 244 HTAVNLFRL----VGHEGSIF-----RIEWSSCGSKLV--SVSDDR--SARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310 (821)
Q Consensus 244 ~~~~~~~~~----~~h~~~I~-----~l~~s~~~~~l~--s~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 310 (821)
.++....+ .+|.+.+. .++|+|||+.|+ +...++ .|.+||+.+++. ..+..+...
T Consensus 291 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-----------~~lt~~~~~ 358 (719)
T 1z68_A 291 -TWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-----------IQITSGKWE 358 (719)
T ss_dssp -SEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-----------EECSCSSSC
T ss_pred -CCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-----------EecccCceE
Confidence 22222122 36777776 889999998654 344555 466667665443 344445555
Q ss_pred EEEEEEc-CCEEEEEeCC-----CeEEEEcCC---Cc-eeeEeec----ccCCCeEEEEEecCCCEEEE-EeCC--CcEE
Q 003423 311 VWDCCLT-DSFIITAGED-----CTCRVWGSD---GK-QLKMIKE----HIGRGIWRCLYDSLSSLLVT-AGFD--SAIK 373 (821)
Q Consensus 311 i~~v~~~-~~~l~s~~~d-----g~i~iwd~~---~~-~~~~~~~----h~~~~i~~l~~~~~~~~l~t-g~~d--g~I~ 373 (821)
+..+.+. ++.++..+.+ +..++|.++ +. ....+.. +.. .+..+.|+|++++++. ++.+ ..+.
T Consensus 359 v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~-~~~~~~~s~dg~~l~~~~s~~~~p~~~ 437 (719)
T 1z68_A 359 AINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERC-QYYTASFSDYAKYYALVCYGPGIPIST 437 (719)
T ss_dssp EEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTB-CBEEEEECGGGSSEEEEECCBSSCEEE
T ss_pred EEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCC-ceEEEEECCCCCEEEEEcCCCCCCeEE
Confidence 6554443 5566655554 889999872 32 2233332 333 4788999999887664 3333 4677
Q ss_pred EEEcC
Q 003423 374 VHQFQ 378 (821)
Q Consensus 374 iwd~~ 378 (821)
+||+.
T Consensus 438 l~d~~ 442 (719)
T 1z68_A 438 LHDGR 442 (719)
T ss_dssp EECSS
T ss_pred EEECC
Confidence 88774
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.64 E-value=4.7e-13 Score=141.60 Aligned_cols=281 Identities=12% Similarity=0.060 Sum_probs=170.3
Q ss_pred CCCCcceeecc--ce-------eeeeeEEEEEeccCCCCCCcceEEeecC-----CeEEEEECCC--CeeeeEEEee-cc
Q 003423 3 KKDLSEWRLDV--GQ-------YLGEISALCFVHLPSHLSSLPFLLAGSG-----SQVLLYDLEA--GTLIRPFQVF-HG 65 (821)
Q Consensus 3 ~~~i~~w~~~~--~~-------~~~~Vt~l~~~~~p~~~~~~~~l~~g~~-----~~i~iwd~~t--~~~~~~~~~~-~~ 65 (821)
++.|.+|++.. ++ +...+..++|+ || +++|+++.. +.|.+|+++. |++....... ..
T Consensus 26 ~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~s--pd----g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~ 99 (361)
T 3scy_A 26 SKGIYTFRFNEETGESLPLSDAEVANPSYLIPS--AD----GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG 99 (361)
T ss_dssp CCEEEEEEEETTTCCEEEEEEEECSCCCSEEEC--TT----SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS
T ss_pred CCCEEEEEEeCCCCCEEEeecccCCCCceEEEC--CC----CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC
Confidence 55688887743 33 23456788999 99 566666553 7999998875 5542222221 23
Q ss_pred ccEEeEEeccccCCCCCCccceeeEEEEE-cCCeEEEEEEeecCCCCCCCCCccccccceeee--------ccCCCCcEE
Q 003423 66 IRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQS--------LPRLSHWVF 136 (821)
Q Consensus 66 ~~i~~i~~~~~~~~~~~~~~~~~~~l~~~-g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~h~~~I~ 136 (821)
.....+++ ++ ..++++. +++.+.+|++....... ....... ...+...+.
T Consensus 100 ~~p~~~~~--dg----------~~l~~~~~~~~~v~~~~~~~~g~~~---------~~~~~~~~~g~~~~~~~~~~~~~~ 158 (361)
T 3scy_A 100 ADPCYLTT--NG----------KNIVTANYSGGSITVFPIGQDGALL---------PASDVIEFKGSGPDKERQTMPHLH 158 (361)
T ss_dssp SCEEEEEE--CS----------SEEEEEETTTTEEEEEEBCTTSCBC---------SCSEEEECCCCCSCTTTCSSCCEE
T ss_pred CCcEEEEE--CC----------CEEEEEECCCCEEEEEEeCCCCcCc---------ccceeEEccCCCCCccccCCCcce
Confidence 34566666 21 1344443 57999999997432100 0001111 112234578
Q ss_pred EEEEeecCCCCCEEEEEE-CCCcEEEEEccCCce------e------EEEccCcceeEEEEeeccCCccCeEEEEEe-eC
Q 003423 137 DVCFLKVCNGNRSLAIGC-SDNSIRVWDISNSSI------I------LEVHSPERCLLYSMKLWGDNLEALRIASGT-IY 202 (821)
Q Consensus 137 ~~~~~~~~~~~~~l~t~~-~d~~i~iwd~~~~~~------~------~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~-~d 202 (821)
+++|+| ++++|+++. .++.|.+|++..... + .....+.......+.| ++++.++++++ .+
T Consensus 159 ~~~~sp---dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---spdg~~l~v~~~~~ 232 (361)
T 3scy_A 159 CVRITP---DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIF---NSDGKFAYLINEIG 232 (361)
T ss_dssp EEEECT---TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEE---CTTSSEEEEEETTT
T ss_pred EEEECC---CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEE---cCCCCEEEEEcCCC
Confidence 899999 999776655 478999999875431 1 1222222333455666 68888777766 68
Q ss_pred CEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE---ecCCCcEEEEEEcCCCCEEEEEeC--C
Q 003423 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL---VGHEGSIFRIEWSSCGSKLVSVSD--D 277 (821)
Q Consensus 203 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~I~~l~~s~~~~~l~s~s~--D 277 (821)
+.|.+|++.++ ....+..+ ..+.....+++|+|||++|+++.. +
T Consensus 233 ~~v~v~~~~~g-------------------------------~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~ 281 (361)
T 3scy_A 233 GTVIAFRYADG-------------------------------MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA 281 (361)
T ss_dssp CEEEEEEEETT-------------------------------EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS
T ss_pred CeEEEEEecCC-------------------------------ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC
Confidence 99999998711 11222222 234456789999999998866555 4
Q ss_pred CeEEEEeccc--CcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEe-CCCeEEEEcC---CCceeeEee-cccC
Q 003423 278 RSARIWEVRA--EYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG-EDCTCRVWGS---DGKQLKMIK-EHIG 348 (821)
Q Consensus 278 g~i~iwd~~~--~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~-~dg~i~iwd~---~~~~~~~~~-~h~~ 348 (821)
+.|.+|++.. +. ...+ ..+.. ...+.+++|+ +++|++++ .++.+.+|++ +++...... .+..
T Consensus 282 ~~i~v~~~~~~~g~------~~~~--~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~ 352 (361)
T 3scy_A 282 DGVAIFKVDETNGT------LTKV--GYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVD 352 (361)
T ss_dssp CEEEEEEECTTTCC------EEEE--EEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECS
T ss_pred CEEEEEEEcCCCCc------EEEe--eEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCC
Confidence 8999999963 22 1222 12222 4567789998 46777777 6799999755 344433322 2333
Q ss_pred CCeEEEEEe
Q 003423 349 RGIWRCLYD 357 (821)
Q Consensus 349 ~~i~~l~~~ 357 (821)
.+.|++|.
T Consensus 353 -~p~~v~~~ 360 (361)
T 3scy_A 353 -KPVCLKFV 360 (361)
T ss_dssp -SEEEEEEE
T ss_pred -CCeEEEEc
Confidence 57888875
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.62 E-value=2.9e-14 Score=150.13 Aligned_cols=263 Identities=9% Similarity=0.031 Sum_probs=162.2
Q ss_pred cceEEee-cCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE-cCCeEEEEEEeecCCCCC
Q 003423 35 LPFLLAG-SGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNS 112 (821)
Q Consensus 35 ~~~l~~g-~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~-g~~~v~i~~~~~~~~~~~ 112 (821)
+.+++++ .++.|.+||+.+++.+..+.......++++.++|++ ..++++. +++.|.+||+...
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg----------~~~~v~~~~~~~i~~~d~~t~----- 75 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDN----------RTAYVLNNHYGDIYGIDLDTC----- 75 (349)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTS----------SEEEEEETTTTEEEEEETTTT-----
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCC----------CEEEEEeCCCCcEEEEeCCCC-----
Confidence 4555555 489999999999999988876542247888888653 2344443 5789999998643
Q ss_pred CCCCccccccceeeeccC-C-----CCcEEEEEEeecCCCCCEEEEEECC------------CcEEEEEccCCce---eE
Q 003423 113 QYQPETCVNLSLVQSLPR-L-----SHWVFDVCFLKVCNGNRSLAIGCSD------------NSIRVWDISNSSI---IL 171 (821)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~-h-----~~~I~~~~~~~~~~~~~~l~t~~~d------------~~i~iwd~~~~~~---~~ 171 (821)
+....+.. + ...+.+++|+| ++++|++++.+ +.|.+||+.+++. +.
T Consensus 76 ----------~~~~~~~~~~~~~~~~~~~~~~~~sp---dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 142 (349)
T 1jmx_B 76 ----------KNTFHANLSSVPGEVGRSMYSFAISP---DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR 142 (349)
T ss_dssp ----------EEEEEEESCCSTTEEEECSSCEEECT---TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE
T ss_pred ----------cEEEEEEcccccccccccccceEECC---CCCEEEEEcccccccccccccCCCeEEEEECCCccccceee
Confidence 23333322 2 23378899999 99999988865 8999999988543 33
Q ss_pred EEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCC-CC--CCcccC---------CCCCCc----c
Q 003423 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN-SP--EGNHAH---------GSSSDF----K 235 (821)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~~--~~~~~~---------~~~~~~----~ 235 (821)
.+..+.. +.++++ ++++. +++++ +.|.+||..+.+...... .. ...... ...... .
T Consensus 143 ~~~~~~~--~~~~~~---s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (349)
T 1jmx_B 143 TFPMPRQ--VYLMRA---ADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLY 214 (349)
T ss_dssp EEECCSS--CCCEEE---CTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEE
T ss_pred eccCCCc--ccceeE---CCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeee
Confidence 3333332 333444 57787 55443 459999987544211100 00 000000 000000 0
Q ss_pred eeee-------------------cccccceeeEEEEecCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecccCcccCCCC
Q 003423 236 CFKL-------------------QDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDS 295 (821)
Q Consensus 236 ~~~~-------------------~~~~~~~~~~~~~~~h~~~I~~l~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~ 295 (821)
.+.+ .+..........+..+...+.+++|+| ++++++++ ++.|.+||+.+++.
T Consensus 215 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~----- 287 (349)
T 1jmx_B 215 TIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKL----- 287 (349)
T ss_dssp EEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEE-----
T ss_pred eeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeE-----
Confidence 0000 000001111223344666789999999 99999888 88999999988654
Q ss_pred ceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecc
Q 003423 296 IEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEH 346 (821)
Q Consensus 296 ~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h 346 (821)
.. .+ .....+.+++|+ +++|++++.++.|++||. +++.+..+...
T Consensus 288 ~~-----~~-~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 288 IK-----AA-NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EE-----EE-ECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EE-----EE-cCCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 21 22 233456789998 467888889999999999 67777776554
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.61 E-value=8.8e-14 Score=161.97 Aligned_cols=326 Identities=10% Similarity=0.041 Sum_probs=191.0
Q ss_pred CCCcceeeccceeeeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccc--cE--EeEEeccccCC
Q 003423 4 KDLSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGI--RL--HGISCNFINCT 79 (821)
Q Consensus 4 ~~i~~w~~~~~~~~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~--~i--~~i~~~~~~~~ 79 (821)
+.+.+.++..+.+......++|+ || +.+++++ ++.|++||+.+++....+..+... .+ ..+.|+|++
T Consensus 3 ~~~tl~~~~~~~~~~~~~~~~w~--~d----g~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg-- 73 (740)
T 4a5s_A 3 KTYTLTDYLKNTYRLKLYSLRWI--SD----HEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDG-- 73 (740)
T ss_dssp EECCHHHHHHTCSCCCCCCEEEC--SS----SEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTS--
T ss_pred CceeHHHHhcCcccccccccEEC--CC----CcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCC--
Confidence 34666777777777778899999 99 6788887 999999999999876666544321 11 236677553
Q ss_pred CCCCccceeeEEEEEcC---------CeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEE
Q 003423 80 EGSVSTRVTFEVALFGE---------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL 150 (821)
Q Consensus 80 ~~~~~~~~~~~l~~~g~---------~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l 150 (821)
+ .++....+ +.+.+||+..+. ...+..|.+.+...+||| ||+.|
T Consensus 74 -----~---~l~~~~~~~~~~r~~~~~~~~~~d~~~~~----------------~~~l~~~~~~~~~~~~SP---dG~~l 126 (740)
T 4a5s_A 74 -----Q---FILLEYNYVKQWRHSYTASYDIYDLNKRQ----------------LITEERIPNNTQWVTWSP---VGHKL 126 (740)
T ss_dssp -----S---EEEEEEEEEECSSSCEEEEEEEEETTTTE----------------ECCSSCCCTTEEEEEECS---STTCE
T ss_pred -----C---EEEEEECCeeeEEEccceEEEEEECCCCc----------------EEEcccCCCcceeeEECC---CCCEE
Confidence 2 34444443 566788887542 344667788999999999 99999
Q ss_pred EEEECCCcEEEEEccCCceeEEEccCcceeEE-----------------EEeeccCCccCeEEEEEeeCC-EEEEEEccc
Q 003423 151 AIGCSDNSIRVWDISNSSIILEVHSPERCLLY-----------------SMKLWGDNLEALRIASGTIYN-EIIVWKVDW 212 (821)
Q Consensus 151 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-----------------s~~~~~~s~~~~~l~sg~~dg-~i~vwd~~~ 212 (821)
|.+. ++.|.+||+.++...+-........++ ++.+ |||+..||.+..|. .+.+|++..
T Consensus 127 a~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w---SpDg~~la~~~~d~~~v~~~~~~~ 202 (740)
T 4a5s_A 127 AYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWW---SPNGTFLAYAQFNDTEVPLIEYSF 202 (740)
T ss_dssp EEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEE---CTTSSEEEEEEEECTTCCEEEEEE
T ss_pred EEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEE---CCCCCEEEEEEEcccCCceEEEEe
Confidence 9875 789999999887754321111111111 1223 69999999887654 488887752
Q ss_pred CCccc-CCC--CCCCcccCCCCCCcceeeeccccc--cee--eEEEEe------cCCCcEEEEEEcCCCCEEEEEeC---
Q 003423 213 EHVAP-LLN--SPEGNHAHGSSSDFKCFKLQDQQH--TAV--NLFRLV------GHEGSIFRIEWSSCGSKLVSVSD--- 276 (821)
Q Consensus 213 ~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~------~h~~~I~~l~~s~~~~~l~s~s~--- 276 (821)
..... ... ........+.......+.+++... .+. ....+. +|...+..++|+|||+.++....
T Consensus 203 ~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~ 282 (740)
T 4a5s_A 203 YSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQ 282 (740)
T ss_dssp CCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESST
T ss_pred ecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCC
Confidence 11100 000 000001111111111222222211 010 222333 38888999999999997665532
Q ss_pred -CCeEEEEecccCc----ccCCCCceeeeceEEeccceeEE-----EEEEc--CCEEE-EEe-CCC--eEEEEcCCCcee
Q 003423 277 -DRSARIWEVRAEY----WKDSDSIEEVGSSVLYGHNARVW-----DCCLT--DSFII-TAG-EDC--TCRVWGSDGKQL 340 (821)
Q Consensus 277 -Dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~h~~~i~-----~v~~~--~~~l~-s~~-~dg--~i~iwd~~~~~~ 340 (821)
+..|++||+.+++ + .... .....+|...|. ...|+ ++.++ ..+ .+| .|.+|+.++...
T Consensus 283 ~~~~i~~~d~~tg~~~~~~-----~~~~-~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~ 356 (740)
T 4a5s_A 283 NYSVMDICDYDESSGRWNC-----LVAR-QHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC 356 (740)
T ss_dssp TEEEEEEEEEETTTTEEEE-----CGGG-CEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred CEEEEEEEECCCCccccce-----eEEE-EeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce
Confidence 3479999998876 2 0000 012245555544 67788 35555 555 344 577788876666
Q ss_pred eEeecccCCCeEEEEEecCCCEEE-EEeC----CCcEEEEEc
Q 003423 341 KMIKEHIGRGIWRCLYDSLSSLLV-TAGF----DSAIKVHQF 377 (821)
Q Consensus 341 ~~~~~h~~~~i~~l~~~~~~~~l~-tg~~----dg~I~iwd~ 377 (821)
..+..... .+..+.. ++++.|+ ++.. .+...+|.+
T Consensus 357 ~~lT~g~~-~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v 396 (740)
T 4a5s_A 357 TFITKGTW-EVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKI 396 (740)
T ss_dssp EESCCSSS-CEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred EecccCCE-EEEEEEE-EeCCEEEEEEecCCCCCceeEEEEE
Confidence 66655443 4655442 3455554 4443 234455544
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.59 E-value=2.1e-13 Score=143.44 Aligned_cols=266 Identities=12% Similarity=0.081 Sum_probs=164.8
Q ss_pred EEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEE-EEEeeCCEEEEEEcccCCcc
Q 003423 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRI-ASGTIYNEIIVWKVDWEHVA 216 (821)
Q Consensus 138 ~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l-~sg~~dg~i~vwd~~~~~~~ 216 (821)
+++++ ++.++++++.++.|.+||..+++.+..+..+.......+.+ ++++.++ +++..++.|.+||+.
T Consensus 5 ~~~~~---~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~---s~dg~~~~v~~~~~~~i~~~d~~----- 73 (349)
T 1jmx_B 5 PALKA---GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMM---APDNRTAYVLNNHYGDIYGIDLD----- 73 (349)
T ss_dssp CCCCT---TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEE---CTTSSEEEEEETTTTEEEEEETT-----
T ss_pred ccccC---CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEE---CCCCCEEEEEeCCCCcEEEEeCC-----
Confidence 45666 88899999999999999999998888776554111223444 5777655 555678999999988
Q ss_pred cCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecC------CCcEEEEEEcCCCCEEEEEeCC------------C
Q 003423 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH------EGSIFRIEWSSCGSKLVSVSDD------------R 278 (821)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h------~~~I~~l~~s~~~~~l~s~s~D------------g 278 (821)
..+....+..+ ...+.+++|+|+|++|++++.+ +
T Consensus 74 ----------------------------t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 125 (349)
T 1jmx_B 74 ----------------------------TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP 125 (349)
T ss_dssp ----------------------------TTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred ----------------------------CCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCC
Confidence 44444444422 2237789999999999988865 8
Q ss_pred eEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecccC-C-----
Q 003423 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIG-R----- 349 (821)
Q Consensus 279 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~-~----- 349 (821)
.|.+||+.+++. .+.+ ....+...+.+++|+ ++ ++.++. .|.+||. +++.+..+..+.. .
T Consensus 126 ~i~~~d~~~~~~-----~~~~---~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 194 (349)
T 1jmx_B 126 RLEVFSTADGLE-----AKPV---RTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSA 194 (349)
T ss_dssp EEEEEEGGGGGG-----BCCS---EEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCC
T ss_pred eEEEEECCCccc-----ccee---eeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccC
Confidence 999999988543 2211 222334468888898 35 666544 4999999 6776666654320 0
Q ss_pred -----------------CeEEEEEecCCCE-----------EEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceE
Q 003423 350 -----------------GIWRCLYDSLSSL-----------LVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIF 401 (821)
Q Consensus 350 -----------------~i~~l~~~~~~~~-----------l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (821)
....+++++++.. +.....++.+++|++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 251 (349)
T 1jmx_B 195 PDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA----------------------- 251 (349)
T ss_dssp CBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE-----------------------
T ss_pred ccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc-----------------------
Confidence 1234555544311 1122223333333331
Q ss_pred EeecCCcccceeccCCCCcceEEEEeec-CCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCC
Q 003423 402 SIKIPNFSEQIRLTDSKSEYVRCLHLTS-EDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYP 480 (821)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~i~~l~f~~-~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s 480 (821)
.....+..++++| ++.+++.+ ++.+..++ ..+.+....... ...+.++.+.+
T Consensus 252 ---------------~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d---~~~~~~~~~~~~--~~~~~~~~~s~------ 304 (349)
T 1jmx_B 252 ---------------DLTELYFTGLRSPKDPNQIYGV-LNRLAKYD---LKQRKLIKAANL--DHTYYCVAFDK------ 304 (349)
T ss_dssp ---------------ECSSCEEEEEECSSCTTEEEEE-ESEEEEEE---TTTTEEEEEEEC--SSCCCEEEECS------
T ss_pred ---------------cCCCcceeeEecCCCCCEEEEE-cCeEEEEE---CccCeEEEEEcC--CCCccceEECC------
Confidence 0233478899999 99777776 66666444 433332222222 22344555543
Q ss_pred CCCCcEEEEecCCccEEEEEecCCC
Q 003423 481 CGIDDWVALGDGKGNMTIVRVVGDV 505 (821)
Q Consensus 481 ~~~~~~l~~g~~~g~i~i~~~~~~~ 505 (821)
+++.+++++.++.|++|++.+.+
T Consensus 305 --dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 305 --KGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp --SSSCEEEESBSSEEEEEETTTTE
T ss_pred --CCCEEEEecCCCeEEEEeccccc
Confidence 45777778888999999986543
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.57 E-value=1.3e-12 Score=138.34 Aligned_cols=269 Identities=9% Similarity=-0.010 Sum_probs=164.8
Q ss_pred CeEEEEEC--CCCeeeeEEEe--eccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccc
Q 003423 44 SQVLLYDL--EAGTLIRPFQV--FHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETC 119 (821)
Q Consensus 44 ~~i~iwd~--~t~~~~~~~~~--~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~ 119 (821)
+.|.+|++ .+|++...-.. .....+..++++|++ ..++++..+ .+.+|++....
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg----------~~l~~~~~~-~v~~~~~~~~g----------- 71 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHER----------KNIYGAAMK-KWSSFAVKSPT----------- 71 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTS----------SEEEEEEBT-EEEEEEEEETT-----------
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCC----------CEEEEEccc-eEEEEEECCCC-----------
Confidence 46777664 56765322111 122357788888663 234444445 99999987211
Q ss_pred cccceeeeccCCCCcEEEEEEeecCCCCCE--EEEEE-------------CCCcEEEEEcc-CCceeEEEcc---Cccee
Q 003423 120 VNLSLVQSLPRLSHWVFDVCFLKVCNGNRS--LAIGC-------------SDNSIRVWDIS-NSSIILEVHS---PERCL 180 (821)
Q Consensus 120 ~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~--l~t~~-------------~d~~i~iwd~~-~~~~~~~~~~---~~~~~ 180 (821)
.+........+ +.+.+++|+| +|++ ++++. .++.+.+|++. +++....+.. .....
T Consensus 72 -~~~~~~~~~~~-g~~~~~~~sp---dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~ 146 (365)
T 1jof_A 72 -EIVHEASHPIG-GHPRANDADT---NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTG 146 (365)
T ss_dssp -EEEEEEEEECC-SSGGGGCTTS---CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCC
T ss_pred -CEEEeeEeecC-CCCccEEECC---CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCc
Confidence 01111121111 2245688999 9984 55553 68999999997 4655433331 12234
Q ss_pred EEEEeeccCCccCeEEEEEee-CCEEEEEEcc-cCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEe--cCC
Q 003423 181 LYSMKLWGDNLEALRIASGTI-YNEIIVWKVD-WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV--GHE 256 (821)
Q Consensus 181 ~~s~~~~~~s~~~~~l~sg~~-dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~ 256 (821)
..++.+ +|++.+++++.. ++.|.+|++. ++ +...+..+. .|.
T Consensus 147 ~~~~~~---spdG~~l~~~~~~~~~v~~~~~~~~g-------------------------------~~~~~~~~~~~~~g 192 (365)
T 1jof_A 147 IHGMVF---DPTETYLYSADLTANKLWTHRKLASG-------------------------------EVELVGSVDAPDPG 192 (365)
T ss_dssp EEEEEE---CTTSSEEEEEETTTTEEEEEEECTTS-------------------------------CEEEEEEEECSSTT
T ss_pred ceEEEE---CCCCCEEEEEcCCCCEEEEEEECCCC-------------------------------CEEEeeeEecCCCC
Confidence 556666 688888877654 6899999986 11 122233333 246
Q ss_pred CcEEEEEEcCCCCEEEEEeC-CCeEEEEeccc--CcccCCCCceeee-ceEE----eccce------eEEEEE-Ec--CC
Q 003423 257 GSIFRIEWSSCGSKLVSVSD-DRSARIWEVRA--EYWKDSDSIEEVG-SSVL----YGHNA------RVWDCC-LT--DS 319 (821)
Q Consensus 257 ~~I~~l~~s~~~~~l~s~s~-Dg~i~iwd~~~--~~~~~~~~~~~~~-~~~~----~~h~~------~i~~v~-~~--~~ 319 (821)
..+..++|+|+|++|++++. +++|.+|++.. ++. ..... ...+ .+|.. .+..++ |+ ++
T Consensus 193 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~ 267 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP-----VYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK 267 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-----EEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS
T ss_pred CCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcE-----EEccceEEcCCCCcCCcccccccccccccEEEECCCCC
Confidence 67999999999999887764 78999998763 322 10000 0011 12332 588999 98 46
Q ss_pred EEEEEeCC-C-----eEEEEcC--CCceeeE---eecccCCCeEEEEEec---CCCEEEEEeCC-CcEEEEEcCC
Q 003423 320 FIITAGED-C-----TCRVWGS--DGKQLKM---IKEHIGRGIWRCLYDS---LSSLLVTAGFD-SAIKVHQFQA 379 (821)
Q Consensus 320 ~l~s~~~d-g-----~i~iwd~--~~~~~~~---~~~h~~~~i~~l~~~~---~~~~l~tg~~d-g~I~iwd~~~ 379 (821)
+|+++..+ . +|.+|++ +++.... ...+.. .+..++|+| +|++|++++.+ +.|++|+++.
T Consensus 268 ~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~-~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 268 YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS-GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC-CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred EEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCC-CcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 77766543 2 8999998 3544331 222333 366889999 89999999865 8999999854
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.56 E-value=5.6e-13 Score=141.10 Aligned_cols=254 Identities=8% Similarity=-0.038 Sum_probs=154.2
Q ss_pred eeEEEEEeccCCCCCCcceEEeecCCeEEEEECC-CCeeeeEEEeeccccEEeEEeccccCCCCCCccceee-EEEEE--
Q 003423 19 EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLE-AGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF-EVALF-- 94 (821)
Q Consensus 19 ~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~-t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~-~l~~~-- 94 (821)
.+..++|+ || +++|+++..+.|.+||+. +|++...........+..+.++|++ + . ++++.
T Consensus 41 ~~~~~a~s--pd----g~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg-------~---~l~~~~~~~ 104 (365)
T 1jof_A 41 PISWMTFD--HE----RKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNT-------R---AIFLLAAKQ 104 (365)
T ss_dssp CCSEEEEC--TT----SSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCC-------E---EEEEEECSS
T ss_pred CCcEEEEC--CC----CCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCC-------C---EEEEEEecC
Confidence 57789999 99 666666554499999997 8877544332211124445666442 2 2 23332
Q ss_pred ------------cCCeEEEEEEeecCCCCCCCCCccccccceeeecc-CCCCcEEEEEEeecCCCCCEEEEEEC-CCcEE
Q 003423 95 ------------GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIR 160 (821)
Q Consensus 95 ------------g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~I~~~~~~~~~~~~~~l~t~~~-d~~i~ 160 (821)
.++.+.+|++.... .+ ...+..+. .+...+.+++|+| +|++|+++.. ++.|+
T Consensus 105 ~~~~~~~~~~~~~~g~v~v~~~~~~g----------~~-~~~~~~~~~~~~~~~~~~~~sp---dG~~l~~~~~~~~~v~ 170 (365)
T 1jof_A 105 PPYAVYANPFYKFAGYGNVFSVSETG----------KL-EKNVQNYEYQENTGIHGMVFDP---TETYLYSADLTANKLW 170 (365)
T ss_dssp TTCCEEEEEESSSCCEEEEEEECTTC----------CE-EEEEEEEECCTTCCEEEEEECT---TSSEEEEEETTTTEEE
T ss_pred CcceeccceeecCCceEEEEccCCCC----------cC-cceEeeEEeCCCCcceEEEECC---CCCEEEEEcCCCCEEE
Confidence 57899999997321 00 01111111 2456799999999 9998887764 67999
Q ss_pred EEEcc-CCcee--EEEccCc-ceeEEEEeeccCCccCeEEEEEee-CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcc
Q 003423 161 VWDIS-NSSII--LEVHSPE-RCLLYSMKLWGDNLEALRIASGTI-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (821)
Q Consensus 161 iwd~~-~~~~~--~~~~~~~-~~~~~s~~~~~~s~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (821)
+||+. +++.. ..+..+. ......+.| +|++.++++++. ++.|.+|++....
T Consensus 171 ~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~---spdg~~l~v~~~~~~~v~v~~~~~~~--------------------- 226 (365)
T 1jof_A 171 THRKLASGEVELVGSVDAPDPGDHPRWVAM---HPTGNYLYALMEAGNRICEYVIDPAT--------------------- 226 (365)
T ss_dssp EEEECTTSCEEEEEEEECSSTTCCEEEEEE---CTTSSEEEEEETTTTEEEEEEECTTT---------------------
T ss_pred EEEECCCCCEEEeeeEecCCCCCCCCEeEE---CCCCCEEEEEECCCCeEEEEEEeCCC---------------------
Confidence 99998 67643 3333221 233555666 688988877664 7899999876100
Q ss_pred eeeecccccc--eeeEEEE----ecCCC------cEEEEE-EcCCCCEEEEEeCCC------eEEEEecc-cCcccCCCC
Q 003423 236 CFKLQDQQHT--AVNLFRL----VGHEG------SIFRIE-WSSCGSKLVSVSDDR------SARIWEVR-AEYWKDSDS 295 (821)
Q Consensus 236 ~~~~~~~~~~--~~~~~~~----~~h~~------~I~~l~-~s~~~~~l~s~s~Dg------~i~iwd~~-~~~~~~~~~ 295 (821)
+... ...+..+ .+|.. .+.+++ |+|||++|+++..+. +|.+|++. +++.
T Consensus 227 ------g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~----- 295 (365)
T 1jof_A 227 ------HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI----- 295 (365)
T ss_dssp ------CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE-----
T ss_pred ------CcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE-----
Confidence 0000 0011111 12333 588999 999999887765432 89999996 3332
Q ss_pred ceeeeceEEeccceeEEEEEEc-----CCEEEEEeCC-CeEEEEcCCCce
Q 003423 296 IEEVGSSVLYGHNARVWDCCLT-----DSFIITAGED-CTCRVWGSDGKQ 339 (821)
Q Consensus 296 ~~~~~~~~~~~h~~~i~~v~~~-----~~~l~s~~~d-g~i~iwd~~~~~ 339 (821)
..+. .....+...+..++|+ +++|++++.+ ++|++|+++.+.
T Consensus 296 -~~~~-~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 296 -EKQL-FLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp -EEEE-EEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred -EEee-eeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 1110 0122233344556665 4688888765 899999985543
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.52 E-value=1.1e-12 Score=140.29 Aligned_cols=260 Identities=8% Similarity=-0.080 Sum_probs=157.1
Q ss_pred eEEEEECCCCeeeeEEEeeccccEEe-----EEeccccCCCCCCccceeeEEEEEc-CCe--EEEEEEeecCCCCCCCCC
Q 003423 45 QVLLYDLEAGTLIRPFQVFHGIRLHG-----ISCNFINCTEGSVSTRVTFEVALFG-EKR--VKLFELNFELSPNSQYQP 116 (821)
Q Consensus 45 ~i~iwd~~t~~~~~~~~~~~~~~i~~-----i~~~~~~~~~~~~~~~~~~~l~~~g-~~~--v~i~~~~~~~~~~~~~~~ 116 (821)
....+|..+|..+..+..+.. ..+. .+|+|+ ++ .++.+.. ++. |.+|++..+
T Consensus 11 ~~~~~~~~~g~~~~~lt~~~~-~~~~~~~~~~~~SpD-------g~---~l~~~~~~~g~~~l~~~d~~~g--------- 70 (388)
T 3pe7_A 11 FDTYQDASTGAQVTRLTPPDV-TCHRNYFYQKCFTRD-------GS---KLLFGGAFDGPWNYYLLDLNTQ--------- 70 (388)
T ss_dssp CEEEECTTTCCEEEECSCTTS-CEECCCTTSCCBCTT-------SC---EEEEEECTTSSCEEEEEETTTC---------
T ss_pred ceEEecCCCCcceEEecCCcc-cccchhhcCccCCCC-------CC---EEEEEEcCCCCceEEEEeCCCC---------
Confidence 344567778887777765443 3444 556644 33 3444444 564 555554422
Q ss_pred ccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEE
Q 003423 117 ETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRI 196 (821)
Q Consensus 117 ~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l 196 (821)
+......++...+..++|+| +++.|+.++.++.|.+||+.+++.......+..... ...+. .++++.++
T Consensus 71 ------~~~~lt~~~~~~~~~~~~sp---dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~-~~~~~-~~~dg~~l 139 (388)
T 3pe7_A 71 ------VATQLTEGRGDNTFGGFLSP---DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVG-YGTWV-ANSDCTKL 139 (388)
T ss_dssp ------EEEECCCSSCBCSSSCEECT---TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEE-EEEEE-ECTTSSEE
T ss_pred ------ceEEeeeCCCCCccceEEcC---CCCEEEEEeCCCeEEEEECCCCcceeeeechhhccc-cccee-ECCCCCee
Confidence 33444456666666788999 999999999999999999999887655544433221 11111 15677777
Q ss_pred EEE----------------------eeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEec
Q 003423 197 ASG----------------------TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (821)
Q Consensus 197 ~sg----------------------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (821)
+.. ..++.|.+||+. .++ ...+..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~---------------------------------~g~-~~~l~~ 185 (388)
T 3pe7_A 140 VGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK---------------------------------TGE-STVILQ 185 (388)
T ss_dssp EEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT---------------------------------TCC-EEEEEE
T ss_pred ccccccCcccccccccchhhhhhccCCcceEEEEECC---------------------------------CCc-eEEeec
Confidence 642 233678888876 222 233445
Q ss_pred CCCcEEEEEEcC-CCCEEEEEeCC------CeEEEEecccCcccCCCCceeeeceEEeccc--eeEEEEEEc--CCEEEE
Q 003423 255 HEGSIFRIEWSS-CGSKLVSVSDD------RSARIWEVRAEYWKDSDSIEEVGSSVLYGHN--ARVWDCCLT--DSFIIT 323 (821)
Q Consensus 255 h~~~I~~l~~s~-~~~~l~s~s~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~--~~i~~v~~~--~~~l~s 323 (821)
+...+..++|+| +|+.|+.++.+ ..|.++|...... ..+..+. ..+...+|+ ++.|+.
T Consensus 186 ~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-----------~~l~~~~~~~~~~~~~~spdg~~l~~ 254 (388)
T 3pe7_A 186 ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-----------RKVKTHAEGESCTHEFWVPDGSALVY 254 (388)
T ss_dssp ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-----------EESCCCCTTEEEEEEEECTTSSCEEE
T ss_pred CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-----------EEeeeCCCCcccccceECCCCCEEEE
Confidence 777899999999 99998877763 3677777765443 2333333 457788898 354544
Q ss_pred -EeCCC----eEEEEcCCCceeeEeecccCC-----CeEEEEEecCCCEEEEE---------eCCCcEEEEEcCCc
Q 003423 324 -AGEDC----TCRVWGSDGKQLKMIKEHIGR-----GIWRCLYDSLSSLLVTA---------GFDSAIKVHQFQAF 380 (821)
Q Consensus 324 -~~~dg----~i~iwd~~~~~~~~~~~h~~~-----~i~~l~~~~~~~~l~tg---------~~dg~I~iwd~~~~ 380 (821)
...++ .|.+||+.+.....+....+. ....++|+|+|+.|+.. ..+..|.+||+.+.
T Consensus 255 ~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 255 VSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp EEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred EecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 33322 399999943322222211110 01123689999877754 45668999998653
No 165
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.52 E-value=7.7e-12 Score=127.33 Aligned_cols=233 Identities=9% Similarity=0.131 Sum_probs=162.9
Q ss_pred cEEeEEeccccCCCCCCccceeeEEEE-EcCCeEEEEEEeecCCCCCCCCCccccccceeeec------cCCCCcEEEEE
Q 003423 67 RLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL------PRLSHWVFDVC 139 (821)
Q Consensus 67 ~i~~i~~~~~~~~~~~~~~~~~~~l~~-~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~I~~~~ 139 (821)
.+.++++++++ .++++ ..++.|.+|+.+.. ....+ .++...+.+++
T Consensus 31 ~p~~v~~~~~g-----------~l~v~~~~~~~i~~~d~~g~----------------~~~~~~~~~~~~~~~~~p~~i~ 83 (286)
T 1q7f_A 31 EPSGVAVNAQN-----------DIIVADTNNHRIQIFDKEGR----------------FKFQFGECGKRDSQLLYPNRVA 83 (286)
T ss_dssp CEEEEEECTTC-----------CEEEEEGGGTEEEEECTTSC----------------EEEEECCBSSSTTCBSSEEEEE
T ss_pred CCceEEECCCC-----------CEEEEECCCCEEEEECCCCc----------------EEEEecccCCCcccccCceEEE
Confidence 47788887553 24444 46789999986521 12222 23456789999
Q ss_pred Ee-ecCCCCCEEEEEEC-CCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCccc
Q 003423 140 FL-KVCNGNRSLAIGCS-DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217 (821)
Q Consensus 140 ~~-~~~~~~~~l~t~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~ 217 (821)
+. + ++.++++... ++.|.+|| .+++.+..+..........+++ ++++.++++...++.|.+|+..
T Consensus 84 ~~~~---~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~---~~~g~l~v~~~~~~~i~~~~~~------ 150 (286)
T 1q7f_A 84 VVRN---SGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTV---DNKGRIIVVECKVMRVIIFDQN------ 150 (286)
T ss_dssp EETT---TTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEE---CTTSCEEEEETTTTEEEEECTT------
T ss_pred EEcC---CCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEE---eCCCCEEEEECCCCEEEEEcCC------
Confidence 95 5 6666665543 78999999 6677776665443334556666 4678888887788999999965
Q ss_pred CCCCCCCcccCCCCCCcceeeecccccceeeEEEEe--cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCC
Q 003423 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV--GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDS 295 (821)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~ 295 (821)
...+..+. ++...+.+|+++|+|+++++...++.|++||......
T Consensus 151 ----------------------------g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~----- 197 (286)
T 1q7f_A 151 ----------------------------GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYL----- 197 (286)
T ss_dssp ----------------------------SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEE-----
T ss_pred ----------------------------CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEE-----
Confidence 12222332 4556789999999999888888899999999754322
Q ss_pred ceeeeceEEe--ccceeEEEEEEc--CCEEEEEeCCC-eEEEEcCCCceeeEeecccC-CCeEEEEEecCCCEEEEEeCC
Q 003423 296 IEEVGSSVLY--GHNARVWDCCLT--DSFIITAGEDC-TCRVWGSDGKQLKMIKEHIG-RGIWRCLYDSLSSLLVTAGFD 369 (821)
Q Consensus 296 ~~~~~~~~~~--~h~~~i~~v~~~--~~~l~s~~~dg-~i~iwd~~~~~~~~~~~h~~-~~i~~l~~~~~~~~l~tg~~d 369 (821)
..+. ++...+..++++ +.++++...++ .|.+|+.+++.+..+..+.. ..+.+++++|+|+++++ +.|
T Consensus 198 ------~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~ 270 (286)
T 1q7f_A 198 ------RQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKD 270 (286)
T ss_dssp ------EEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETT
T ss_pred ------EEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCC
Confidence 2232 223567899997 46667776675 99999998888888776543 13779999999987776 679
Q ss_pred CcEEEEEcCC
Q 003423 370 SAIKVHQFQA 379 (821)
Q Consensus 370 g~I~iwd~~~ 379 (821)
+.|++|++..
T Consensus 271 ~~v~v~~~~~ 280 (286)
T 1q7f_A 271 YRLYIYRYVQ 280 (286)
T ss_dssp TEEEEEECSC
T ss_pred CeEEEEEccc
Confidence 9999999843
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.51 E-value=4.5e-12 Score=133.33 Aligned_cols=258 Identities=9% Similarity=-0.013 Sum_probs=167.0
Q ss_pred CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE----------cCCeEEEEEEeecCCCCC
Q 003423 43 GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF----------GEKRVKLFELNFELSPNS 112 (821)
Q Consensus 43 ~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~----------g~~~v~i~~~~~~~~~~~ 112 (821)
++.|.+||..+++++.++..... - .+.++|++ + .+.++. .++.|.+||+...
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~~--p-~i~~spdg-------~---~lyv~~~~~~~~~~g~~~~~v~v~d~~t~----- 91 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAFN--G-HVQVSNDG-------K---KIYTMTTYHERITRGKRSDVVEVWDADKL----- 91 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCEE--E-EEEECTTS-------S---EEEEEEEEETTSSSSCEEEEEEEEETTTC-----
T ss_pred cCeEEEEECCCCeEEEEecCCCC--C-ceEECCCC-------C---EEEEEEecccccccCCCCCEEEEEECcCC-----
Confidence 57999999999999988876432 3 78888664 2 344443 2567999987532
Q ss_pred CCCCccccccceeeeccC------CCCcEEEEEEeecCCCCCEEEEEEC--CCcEEEEEccCCceeEE-EccCcceeEEE
Q 003423 113 QYQPETCVNLSLVQSLPR------LSHWVFDVCFLKVCNGNRSLAIGCS--DNSIRVWDISNSSIILE-VHSPERCLLYS 183 (821)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~------h~~~I~~~~~~~~~~~~~~l~t~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~~~s 183 (821)
+.+..+.. +......++|+| +|++|+++.. +++|.+||+.+++.+.+ +..+.. +.
T Consensus 92 ----------~~~~~i~~~~~~~~~g~~p~~i~~sp---dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~---~~ 155 (361)
T 2oiz_A 92 ----------TFEKEISLPPKRVQGLNYDGLFRQTT---DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC---WS 155 (361)
T ss_dssp ----------CEEEEEEECTTBCCBCCCGGGEEECT---TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE---EE
T ss_pred ----------cEEEEEEcCccccccCCCcceEEECC---CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc---ce
Confidence 33333321 224567799999 9999998864 68999999999988877 554332 12
Q ss_pred EeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeE------EEEecCCC
Q 003423 184 MKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL------FRLVGHEG 257 (821)
Q Consensus 184 ~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~h~~ 257 (821)
+.+.+ .....+++.+.||.+.+|+... ..+.. ..+..+..
T Consensus 156 v~~~p--~~~~~~~~~~~dg~~~~v~~~~--------------------------------~g~~~~~~~~~~~~~~~~~ 201 (361)
T 2oiz_A 156 VIPQP--NRPRSFMTICGDGGLLTINLGE--------------------------------DGKVASQSRSKQMFSVKDD 201 (361)
T ss_dssp EEECT--TSSSEEEEEETTSSEEEEEECT--------------------------------TSSEEEEEECCCCSCTTTS
T ss_pred eEEcC--CCCeeEEEECCCCcEEEEEECC--------------------------------CCcEeeeccccceEcCCCC
Confidence 22222 1235777888999999999861 01111 01112222
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEec----c----ceeEEEEEEc--CCEEEEEeC-
Q 003423 258 SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG----H----NARVWDCCLT--DSFIITAGE- 326 (821)
Q Consensus 258 ~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----h----~~~i~~v~~~--~~~l~s~~~- 326 (821)
++ .+.++|++..++..+.++.|.++|+..... ..+....... + ......++|+ ++.++.+..
T Consensus 202 ~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~ 274 (361)
T 2oiz_A 202 PI-FIAPALDKDKAHFVSYYGNVYSADFSGDEV------KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHP 274 (361)
T ss_dssp CB-CSCCEECSSEEEEEBTTSEEEEEECSSSSC------EEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEES
T ss_pred ce-EEEecccCCEEEEEeCCCeEEEEEecCCCc------eecccccccCccccccccccCCeeEEEEecCCCeEEEEEcc
Confidence 22 233456777777778899999999875432 1110000000 0 0111125666 366666543
Q ss_pred ----------CCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 327 ----------DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 327 ----------dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
.++|.+||+ +++.+.++..+. +++++|+|+|++|++++. +.|.+||..+
T Consensus 275 ~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~---p~~ia~spdg~~l~v~n~-~~v~v~D~~t 334 (361)
T 2oiz_A 275 DGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD---ALSMTIDQQRNLMLTLDG-GNVNVYDISQ 334 (361)
T ss_dssp SCCTTCTTCCCSEEEEEETTTTEEEEEEECTT---CCEEEEETTTTEEEEECS-SCEEEEECSS
T ss_pred CCCcccccCCCceEEEEECCCCcEEEEEecCC---eeEEEECCCCCEEEEeCC-CeEEEEECCC
Confidence 358999999 788888887765 789999999999999887 9999999854
No 167
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.49 E-value=1.9e-11 Score=124.37 Aligned_cols=239 Identities=11% Similarity=0.066 Sum_probs=164.7
Q ss_pred CCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccC-----cceeEEEEeeccCCccCeEEEEEee-CC
Q 003423 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP-----ERCLLYSMKLWGDNLEALRIASGTI-YN 203 (821)
Q Consensus 130 ~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~s~~~~~~s~~~~~l~sg~~-dg 203 (821)
++-..+.+++++| +++++++...++.|.+||.. ++.+..+... .......+++. ++++.++++... ++
T Consensus 27 g~~~~p~~v~~~~---~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~--~~~g~l~v~~~~~~~ 100 (286)
T 1q7f_A 27 GQFTEPSGVAVNA---QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVV--RNSGDIIVTERSPTH 100 (286)
T ss_dssp TCBSCEEEEEECT---TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEE--TTTTEEEEEECGGGC
T ss_pred CccCCCceEEECC---CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEE--cCCCeEEEEcCCCCC
Confidence 5556789999999 89888887888999999976 5555555421 11234455541 245666666643 89
Q ss_pred EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEe-cCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 003423 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSSCGSKLVSVSDDRSARI 282 (821)
Q Consensus 204 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~I~~l~~s~~~~~l~s~s~Dg~i~i 282 (821)
.|.+|+.. ...+..+. .+...+.+++++|+|+++++...++.|.+
T Consensus 101 ~i~~~d~~----------------------------------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 146 (286)
T 1q7f_A 101 QIQIYNQY----------------------------------GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVII 146 (286)
T ss_dssp EEEEECTT----------------------------------SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred EEEEECCC----------------------------------CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 99999954 22333332 34467899999999998888888899999
Q ss_pred EecccCcccCCCCceeeeceEEe--ccceeEEEEEEc--CCEEEEEeCCCeEEEEcCCCceeeEeeccc-CCCeEEEEEe
Q 003423 283 WEVRAEYWKDSDSIEEVGSSVLY--GHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHI-GRGIWRCLYD 357 (821)
Q Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~--~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~h~-~~~i~~l~~~ 357 (821)
||.... . . ..+. ++...+.+++++ ++.+++...++.|++|+.+++.+..+..+. ...+..++++
T Consensus 147 ~~~~g~-~-----~-----~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d 215 (286)
T 1q7f_A 147 FDQNGN-V-----L-----HKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGIN 215 (286)
T ss_dssp ECTTSC-E-----E-----EEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEEC
T ss_pred EcCCCC-E-----E-----EEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEEC
Confidence 996532 2 1 1221 344568899998 345566667899999999888777775442 1258899999
Q ss_pred cCCCEEEEEeCCC-cEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEE
Q 003423 358 SLSSLLVTAGFDS-AIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA 436 (821)
Q Consensus 358 ~~~~~l~tg~~dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~ 436 (821)
++|+++++...++ .|.+|+.++..+..+.. ......+..+++++++.++++
T Consensus 216 ~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~----------------------------~~~~~~~~~i~~~~~g~l~vs 267 (286)
T 1q7f_A 216 SNGEILIADNHNNFNLTIFTQDGQLISALES----------------------------KVKHAQCFDVALMDDGSVVLA 267 (286)
T ss_dssp TTCCEEEEECSSSCEEEEECTTSCEEEEEEE----------------------------SSCCSCEEEEEEETTTEEEEE
T ss_pred CCCCEEEEeCCCCEEEEEECCCCCEEEEEcc----------------------------cCCCCcceeEEECCCCcEEEE
Confidence 9999888888776 99999975432221110 011123778999999999888
Q ss_pred ecCCcEEEEEe
Q 003423 437 TNHGYLYHTKL 447 (821)
Q Consensus 437 ~~~g~~~~~~i 447 (821)
..++.+..+++
T Consensus 268 ~~~~~v~v~~~ 278 (286)
T 1q7f_A 268 SKDYRLYIYRY 278 (286)
T ss_dssp ETTTEEEEEEC
T ss_pred CCCCeEEEEEc
Confidence 76666665443
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.49 E-value=5.6e-12 Score=145.27 Aligned_cols=285 Identities=11% Similarity=0.008 Sum_probs=174.2
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEee--c-CCeEEEEECCCCeeeeEEEeeccccEE---------eEEeccccCCCCCC
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAG--S-GSQVLLYDLEAGTLIRPFQVFHGIRLH---------GISCNFINCTEGSV 83 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g--~-~~~i~iwd~~t~~~~~~~~~~~~~~i~---------~i~~~~~~~~~~~~ 83 (821)
|...|..++++ ++ ..+++.+ . ++...||....+.....+..+. ..+. .+.++. +||
T Consensus 22 ~~~~~~~~~~s--~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~-----SPD 89 (662)
T 3azo_A 22 RSGRPACVGAV--GD----EVWWVAPRPAEAGRATLVRRRADGAEESALPAP-WNVRNRVFEYSGFPWAGVP-----RPA 89 (662)
T ss_dssp TCSCCEEEEEE--TT----EEEEEEEETTTTTEEEEEEECTTSCEEESSCTT-CCBCCCGGGTCCCCEEEEC-----CSS
T ss_pred cCCccceeEEc--CC----eEEEEecCcccCCcEEEEEECCCCCcceeCCCC-ccccccccccCCccceeee-----ecC
Confidence 55678999999 77 4444544 2 6789999965444444443322 2333 333330 133
Q ss_pred ccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCcccccc-ceeeeccC-----CCCcEEEEEEeecCCCCCEEEEEECC-
Q 003423 84 STRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNL-SLVQSLPR-----LSHWVFDVCFLKVCNGNRSLAIGCSD- 156 (821)
Q Consensus 84 ~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----h~~~I~~~~~~~~~~~~~~l~t~~~d- 156 (821)
++ .+++...+...+||.++.... . .....+.. |...+.+++|+| +|+.|+.++.+
T Consensus 90 g~---~~la~~~~~~~~l~~~~~~~~------------g~~~~~~l~~~~~~~~~~~~~~~~~sp---Dg~~l~~~~~~~ 151 (662)
T 3azo_A 90 GG---PLLVFTHFGDQRLYAFEPDAP------------GGAVPRPLTPVSAVGGGLRWADPVLLP---ERGEVWCMAEEF 151 (662)
T ss_dssp SS---CEEEEEBTTTCCEEEECTTST------------TCCCCEECSCCCCSTTCEEEEEEEEET---TTTEEEEEEEEE
T ss_pred CC---eEEEEEECCCCeEEEEcCCCC------------CCCCCEeccCCccCCCCccccCcEECC---CCCEEEEEEecc
Confidence 32 326666554556666653200 0 01223333 677899999999 99999988876
Q ss_pred ---------CcEEEEEccC------CceeEEEc-cCcceeEEEEeeccCCccCeEEEEEeeCC--------EEEEEEccc
Q 003423 157 ---------NSIRVWDISN------SSIILEVH-SPERCLLYSMKLWGDNLEALRIASGTIYN--------EIIVWKVDW 212 (821)
Q Consensus 157 ---------~~i~iwd~~~------~~~~~~~~-~~~~~~~~s~~~~~~s~~~~~l~sg~~dg--------~i~vwd~~~ 212 (821)
..|.+||+.+ ++. ..+. .+. ....++.+ +||+..|+.++.++ .|.+||+..
T Consensus 152 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~-~~~~~~~~---SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~ 226 (662)
T 3azo_A 152 TGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAH-RFVTGPRL---SPDGRQAVWLAWDHPRMPWEGTELKTARVTE 226 (662)
T ss_dssp CSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCS-SEECCCEE---CTTSSEEEEEEECTTCCTTTCEEEEEEEECT
T ss_pred cCCCCCCceeEEEEEECCCCccccCCce-eEEEecCC-CcccCceE---CCCCCEEEEEECCCCCCCCCCcEEEEEEECC
Confidence 5899999987 443 3444 322 23333444 68999999877653 799999871
Q ss_pred CCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCC--eEEEEecccCcc
Q 003423 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR--SARIWEVRAEYW 290 (821)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg--~i~iwd~~~~~~ 290 (821)
. + ..........+|...+..++|+|||+++++++.|+ .|.+||+.+++.
T Consensus 227 ~----------------------------g-~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~ 277 (662)
T 3azo_A 227 D----------------------------G-RFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA 277 (662)
T ss_dssp T----------------------------S-CEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCE
T ss_pred C----------------------------C-cccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCce
Confidence 0 0 00133333445688999999999999888888888 555555544433
Q ss_pred cCCCCceeeeceEEecccee---------EEEEEEc--CCEEEEEeCCCeEEEE--cCCCceeeEeecccCCCeEEE-EE
Q 003423 291 KDSDSIEEVGSSVLYGHNAR---------VWDCCLT--DSFIITAGEDCTCRVW--GSDGKQLKMIKEHIGRGIWRC-LY 356 (821)
Q Consensus 291 ~~~~~~~~~~~~~~~~h~~~---------i~~v~~~--~~~l~s~~~dg~i~iw--d~~~~~~~~~~~h~~~~i~~l-~~ 356 (821)
. .+..+... +..++|+ +.+++++.. +.+++| |.++..+..+..+.. .+..+ ++
T Consensus 278 ------~-----~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~-~~~~~~s~ 344 (662)
T 3azo_A 278 ------T-----QLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAGPWT-EWAATLTV 344 (662)
T ss_dssp ------E-----ESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCSSCC-EEEEEEEE
T ss_pred ------e-----ecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecCCCC-eEEEEEec
Confidence 1 11111111 3467776 467888888 999999 555556778877766 57766 55
Q ss_pred ecCCCEEEEEeCCCcEEEEEc
Q 003423 357 DSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 357 ~~~~~~l~tg~~dg~I~iwd~ 377 (821)
+++.-.+++++.+....+|.+
T Consensus 345 ~~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 345 SGTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp ETTEEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEEEcCCCCCCEEEEE
Confidence 544444555666655555544
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.48 E-value=1.6e-11 Score=129.17 Aligned_cols=271 Identities=8% Similarity=0.088 Sum_probs=175.7
Q ss_pred CCCCcceeeccceee-------eeeEEEEEeccCCCCCCcceEEeec-----------CCeEEEEECCCCeeeeEEEeec
Q 003423 3 KKDLSEWRLDVGQYL-------GEISALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLEAGTLIRPFQVFH 64 (821)
Q Consensus 3 ~~~i~~w~~~~~~~~-------~~Vt~l~~~~~p~~~~~~~~l~~g~-----------~~~i~iwd~~t~~~~~~~~~~~ 64 (821)
|++|.+||..+++.. .| .++|+ || +++|+++. ++.|.+||..+++.+.++....
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~~p--~i~~s--pd----g~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~ 101 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAFNG--HVQVS--ND----GKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP 101 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCEEE--EEEEC--TT----SSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT
T ss_pred cCeEEEEECCCCeEEEEecCCCCC--ceEEC--CC----CCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc
Confidence 568899998888632 33 89999 99 56666543 4679999999999999887642
Q ss_pred -----cccEEeEEeccccCCCCCCccceeeEEEEE-c-CCeEEEEEEeecCCCCCCCCCccccccceeee-ccCCCCcEE
Q 003423 65 -----GIRLHGISCNFINCTEGSVSTRVTFEVALF-G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQS-LPRLSHWVF 136 (821)
Q Consensus 65 -----~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~-g-~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~I~ 136 (821)
+....++.++|++ + +++++. + ++.|.+||+... +.+.. +... . ..
T Consensus 102 ~~~~~g~~p~~i~~spdg-------~---~l~v~n~~~~~~v~v~d~~~~---------------~~~~~~i~~~-~-~~ 154 (361)
T 2oiz_A 102 KRVQGLNYDGLFRQTTDG-------K---FIVLQNASPATSIGIVDVAKG---------------DYVEDVTAAA-G-CW 154 (361)
T ss_dssp TBCCBCCCGGGEEECTTS-------S---EEEEEEESSSEEEEEEETTTT---------------EEEEEEGGGT-T-EE
T ss_pred cccccCCCcceEEECCCC-------C---EEEEECCCCCCeEEEEECCCC---------------cEEEEEecCC-C-cc
Confidence 2346678888553 2 344443 4 689999998743 34444 4322 2 12
Q ss_pred EEEEeecCCCC-CEEEEEECCCcEEEEEccC-CceeEEEc------cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEE
Q 003423 137 DVCFLKVCNGN-RSLAIGCSDNSIRVWDISN-SSIILEVH------SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVW 208 (821)
Q Consensus 137 ~~~~~~~~~~~-~~l~t~~~d~~i~iwd~~~-~~~~~~~~------~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vw 208 (821)
.+.+.| ++ ..+++.+.||.+.+|+... ++...... ..... + +...++++..++..+.++.|.++
T Consensus 155 ~v~~~p---~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~----~~~~~~~g~~~~~~~~~~~v~v~ 226 (361)
T 2oiz_A 155 SVIPQP---NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-I----FIAPALDKDKAHFVSYYGNVYSA 226 (361)
T ss_dssp EEEECT---TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-B----CSCCEECSSEEEEEBTTSEEEEE
T ss_pred eeEEcC---CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-e----EEEecccCCEEEEEeCCCeEEEE
Confidence 255667 54 6778888999999999875 54442211 11110 0 11112455566666778999999
Q ss_pred EcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEe------cCC----CcEEEEEEcCCCCEEEEEeC--
Q 003423 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV------GHE----GSIFRIEWSSCGSKLVSVSD-- 276 (821)
Q Consensus 209 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~----~~I~~l~~s~~~~~l~s~s~-- 276 (821)
|+... .......+. .+. .....++|+|++++++.+..
T Consensus 227 d~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~ 275 (361)
T 2oiz_A 227 DFSGD-------------------------------EVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPD 275 (361)
T ss_dssp ECSSS-------------------------------SCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESS
T ss_pred EecCC-------------------------------CceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccC
Confidence 98611 001111110 011 11123789999887765543
Q ss_pred ---------CCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CC--ceeeE
Q 003423 277 ---------DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DG--KQLKM 342 (821)
Q Consensus 277 ---------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~--~~~~~ 342 (821)
+.+|.+||+.+.+. + ..+..+. +++++|+ +++|++++. ++|.+||. ++ +.+.+
T Consensus 276 ~~~~~~~~~~~~v~viD~~t~~~-----v-----~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~ 342 (361)
T 2oiz_A 276 GKEGTHKFPAAEIWVMDTKTKQR-----V-----ARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRT 342 (361)
T ss_dssp CCTTCTTCCCSEEEEEETTTTEE-----E-----EEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEE
T ss_pred CCcccccCCCceEEEEECCCCcE-----E-----EEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEE
Confidence 35899999988765 3 3555555 8999998 578888886 99999999 67 77777
Q ss_pred eecccCCCeEEEEEecCCC
Q 003423 343 IKEHIGRGIWRCLYDSLSS 361 (821)
Q Consensus 343 ~~~h~~~~i~~l~~~~~~~ 361 (821)
+..... ..+.++++|+|+
T Consensus 343 i~~~G~-~P~~~~~~p~G~ 360 (361)
T 2oiz_A 343 IEGAAE-ASLQVQFHPVGG 360 (361)
T ss_dssp ETTSCS-SEEEEEECCCSC
T ss_pred eccCCC-CcEEEEecCCCC
Confidence 755544 578999999985
No 170
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.47 E-value=1.8e-11 Score=142.53 Aligned_cols=309 Identities=10% Similarity=0.061 Sum_probs=180.8
Q ss_pred CCCCcceeeccceeee------------eeEEEEEeccCCCCCCcceEEeecC----------CeEEEEECCCCeeeeEE
Q 003423 3 KKDLSEWRLDVGQYLG------------EISALCFVHLPSHLSSLPFLLAGSG----------SQVLLYDLEAGTLIRPF 60 (821)
Q Consensus 3 ~~~i~~w~~~~~~~~~------------~Vt~l~~~~~p~~~~~~~~l~~g~~----------~~i~iwd~~t~~~~~~~ 60 (821)
|++|++|++.+++... ....++|| || +++|+.+.+ +.+.+||+++++... +
T Consensus 35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S--pd----g~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l 107 (740)
T 4a5s_A 35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSIS--PD----GQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-E 107 (740)
T ss_dssp TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEEC--TT----SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-S
T ss_pred CCcEEEEECCCCceEEEEechhhhhhcccccceEEC--CC----CCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-c
Confidence 6789999999887210 12347889 99 667766664 678899999998653 3
Q ss_pred EeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEE----
Q 003423 61 QVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVF---- 136 (821)
Q Consensus 61 ~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~---- 136 (821)
..+. ..+....|+|++ ..|+...++.|.+|++..+....... .......+.++.+||+
T Consensus 108 ~~~~-~~~~~~~~SPdG-----------~~la~~~~~~i~~~~~~~~~~~~lt~------~g~~~~~~~g~~~~v~~ee~ 169 (740)
T 4a5s_A 108 ERIP-NNTQWVTWSPVG-----------HKLAYVWNNDIYVKIEPNLPSYRITW------TGKEDIIYNGITDWVYEEEV 169 (740)
T ss_dssp SCCC-TTEEEEEECSST-----------TCEEEEETTEEEEESSTTSCCEECCS------CCBTTTEEESBCCHHHHHHT
T ss_pred ccCC-CcceeeEECCCC-----------CEEEEEECCeEEEEECCCCceEEEcC------CCCccceecCcccccccchh
Confidence 3323 368889999664 35666678999999986442100000 0011112334444443
Q ss_pred -----EEEEeecCCCCCEEEEEECCC------------------------------------cEEEEEccC---Cc--ee
Q 003423 137 -----DVCFLKVCNGNRSLAIGCSDN------------------------------------SIRVWDISN---SS--II 170 (821)
Q Consensus 137 -----~~~~~~~~~~~~~l~t~~~d~------------------------------------~i~iwd~~~---~~--~~ 170 (821)
.+.||| ||+.||.++.|. .|.+||+.+ ++ ..
T Consensus 170 ~~~~~~~~wSp---Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~ 246 (740)
T 4a5s_A 170 FSAYSALWWSP---NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATS 246 (740)
T ss_dssp SSSSBCEEECT---TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCE
T ss_pred cCCCcceEECC---CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceE
Confidence 389999 999999875332 477888887 63 23
Q ss_pred EEEccC-----cceeEEEEeeccCCccCeEEEEEee----CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecc
Q 003423 171 LEVHSP-----ERCLLYSMKLWGDNLEALRIASGTI----YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (821)
Q Consensus 171 ~~~~~~-----~~~~~~s~~~~~~s~~~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (821)
.++..+ ....+.++.+ +||+.+++.... +..|.+||..++.....
T Consensus 247 ~~l~~~~~~~~~~~~~~~~~w---spdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~----------------------- 300 (740)
T 4a5s_A 247 IQITAPASMLIGDHYLCDVTW---ATQERISLQWLRRIQNYSVMDICDYDESSGRWN----------------------- 300 (740)
T ss_dssp EEECCCHHHHTSCEEEEEEEE---EETTEEEEEEEESSTTEEEEEEEEEETTTTEEE-----------------------
T ss_pred EEecCCccCCCCCeEEEEEEE---eCCCeEEEEEeCCCCCEEEEEEEECCCCccccc-----------------------
Confidence 344431 3345666666 578886665543 33799999872210000
Q ss_pred cccceeeEEEEecCCCcEE-----EEEEcCCCCEEE-EEeC-C--CeEEEEecccCcccCCCCceeeeceEEeccceeEE
Q 003423 242 QQHTAVNLFRLVGHEGSIF-----RIEWSSCGSKLV-SVSD-D--RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (821)
Q Consensus 242 ~~~~~~~~~~~~~h~~~I~-----~l~~s~~~~~l~-s~s~-D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 312 (821)
......+ .-.+|.+.|. ..+|+|||+.|+ ..+. + ..|.+||+..+.. ..+......|.
T Consensus 301 -~~~~~~l-~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~-----------~~lT~g~~~v~ 367 (740)
T 4a5s_A 301 -CLVARQH-IEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-----------TFITKGTWEVI 367 (740)
T ss_dssp -ECGGGCE-EEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC-----------EESCCSSSCEE
T ss_pred -eeEEEEe-eeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce-----------EecccCCEEEE
Confidence 0000111 1145666554 788999999877 6654 3 4688888876654 23333344444
Q ss_pred EEE-EcCCEEE-EEeC----CCeEEEEcC--CCceee-Eeecc---cCCCeEEEEEecCCCEEEEEeCC---CcEEEEEc
Q 003423 313 DCC-LTDSFII-TAGE----DCTCRVWGS--DGKQLK-MIKEH---IGRGIWRCLYDSLSSLLVTAGFD---SAIKVHQF 377 (821)
Q Consensus 313 ~v~-~~~~~l~-s~~~----dg~i~iwd~--~~~~~~-~~~~h---~~~~i~~l~~~~~~~~l~tg~~d---g~I~iwd~ 377 (821)
.+. +.++.|+ ++.. .+...+|.+ ++.... .+... .........|+|++++++..... ..+.+++.
T Consensus 368 ~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~ 447 (740)
T 4a5s_A 368 GIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSS 447 (740)
T ss_dssp EEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEET
T ss_pred EEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEEC
Confidence 433 5555544 4443 244555554 544332 33321 11257899999999977655433 34666665
Q ss_pred C
Q 003423 378 Q 378 (821)
Q Consensus 378 ~ 378 (821)
.
T Consensus 448 ~ 448 (740)
T 4a5s_A 448 V 448 (740)
T ss_dssp T
T ss_pred C
Confidence 3
No 171
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.46 E-value=6.8e-12 Score=134.11 Aligned_cols=273 Identities=12% Similarity=-0.012 Sum_probs=164.9
Q ss_pred EEEeccCCCCCCcceEEe-ec-CC--eEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCe
Q 003423 23 LCFVHLPSHLSSLPFLLA-GS-GS--QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (821)
Q Consensus 23 l~~~~~p~~~~~~~~l~~-g~-~~--~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~ 98 (821)
.+|+ || +++|+. +. ++ .|.+||+.+++....... ....+.+..|+|++ ..++.+..++.
T Consensus 41 ~~~S--pD----g~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~-~~~~~~~~~~spdg----------~~l~~~~~~~~ 103 (388)
T 3pe7_A 41 KCFT--RD----GSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG-RGDNTFGGFLSPDD----------DALFYVKDGRN 103 (388)
T ss_dssp CCBC--TT----SCEEEEEECTTSSCEEEEEETTTCEEEECCCS-SCBCSSSCEECTTS----------SEEEEEETTTE
T ss_pred ccCC--CC----CCEEEEEEcCCCCceEEEEeCCCCceEEeeeC-CCCCccceEEcCCC----------CEEEEEeCCCe
Confidence 6799 99 555554 44 45 599999999987655443 33234456788653 24555556789
Q ss_pred EEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEE--eecCCCCCEEEEEE----------------------
Q 003423 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCF--LKVCNGNRSLAIGC---------------------- 154 (821)
Q Consensus 99 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~--~~~~~~~~~l~t~~---------------------- 154 (821)
+.+|++..+. .......+...+....| +| ++.+++...
T Consensus 104 l~~~d~~~g~---------------~~~~~~~~~~~~~~~~~~~~~---dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 104 LMRVDLATLE---------------ENVVYQVPAEWVGYGTWVANS---DCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp EEEEETTTCC---------------EEEEEECCTTEEEEEEEEECT---TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred EEEEECCCCc---------------ceeeeechhhcccccceeECC---CCCeeccccccCcccccccccchhhhhhccC
Confidence 9999987542 22233344555654444 67 888877432
Q ss_pred CCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCc-cCeEEEEEeeC------CEEEEEEcccCCcccCCCCCCCccc
Q 003423 155 SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-EALRIASGTIY------NEIIVWKVDWEHVAPLLNSPEGNHA 227 (821)
Q Consensus 155 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~-~~~~l~sg~~d------g~i~vwd~~~~~~~~~~~~~~~~~~ 227 (821)
.++.|.+||+.+++......... .+..+.+ +| ++..|+..... ..|.++|..
T Consensus 166 ~~~~l~~~d~~~g~~~~l~~~~~--~~~~~~~---sp~dg~~l~~~~~~~~~~~~~~l~~~d~~---------------- 224 (388)
T 3pe7_A 166 PCCRLMRVDLKTGESTVILQENQ--WLGHPIY---RPYDDSTVAFCHEGPHDLVDARMWLINED---------------- 224 (388)
T ss_dssp CCEEEEEEETTTCCEEEEEEESS--CEEEEEE---ETTEEEEEEEEECSCTTTSSCSEEEEETT----------------
T ss_pred CcceEEEEECCCCceEEeecCCc--cccccEE---CCCCCCEEEEEEecCCCCCcceEEEEeCC----------------
Confidence 34679999999886543332222 2334444 57 88888776653 366677765
Q ss_pred CCCCCCcceeeecccccceeeEEEEecCC--CcEEEEEEcCCCCEEEEEeCC-----CeEEEEecccCcccCCCCceeee
Q 003423 228 HGSSSDFKCFKLQDQQHTAVNLFRLVGHE--GSIFRIEWSSCGSKLVSVSDD-----RSARIWEVRAEYWKDSDSIEEVG 300 (821)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~I~~l~~s~~~~~l~s~s~D-----g~i~iwd~~~~~~~~~~~~~~~~ 300 (821)
.. ....+..+. ..+..++|+|||+.|+..+.+ +.|.+||+.+++. +.+
T Consensus 225 -----------------~~-~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~------~~l- 279 (388)
T 3pe7_A 225 -----------------GT-NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN------RQL- 279 (388)
T ss_dssp -----------------SC-CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE------EEE-
T ss_pred -----------------CC-ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce------EEE-
Confidence 11 122233333 357889999999977654432 2399999988754 111
Q ss_pred ceEEeccceeEE---EEEEc--CCEEEEE---------eCCCeEEEEcCCCceeeEeecccCC----------CeEEEEE
Q 003423 301 SSVLYGHNARVW---DCCLT--DSFIITA---------GEDCTCRVWGSDGKQLKMIKEHIGR----------GIWRCLY 356 (821)
Q Consensus 301 ~~~~~~h~~~i~---~v~~~--~~~l~s~---------~~dg~i~iwd~~~~~~~~~~~h~~~----------~i~~l~~ 356 (821)
....++..... ...|+ ++.|+.. ..+..|.+||+++.....+..+... .+..++|
T Consensus 280 -~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 358 (388)
T 3pe7_A 280 -TSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSF 358 (388)
T ss_dssp -EEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEE
T ss_pred -EcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccC
Confidence 12222111111 12455 3444432 5567999999976666666665540 2677899
Q ss_pred ecCCCEEEEEe-CCCcEEEEEc
Q 003423 357 DSLSSLLVTAG-FDSAIKVHQF 377 (821)
Q Consensus 357 ~~~~~~l~tg~-~dg~I~iwd~ 377 (821)
+|+|+.|+..+ .+|...+|.+
T Consensus 359 spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 359 TPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp CTTSSEEEEEECTTSSCEEEEE
T ss_pred CCCCCEEEEEecCCCceeEEEE
Confidence 99998877655 5777777766
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.44 E-value=1.2e-11 Score=128.54 Aligned_cols=246 Identities=11% Similarity=0.073 Sum_probs=166.5
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeecCC-------------------------eEEEEECCCCeeeeEEEeeccccEEe
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGSGS-------------------------QVLLYDLEAGTLIRPFQVFHGIRLHG 70 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~~~-------------------------~i~iwd~~t~~~~~~~~~~~~~~i~~ 70 (821)
..+.|++++++ |+ ++++++..+. .|.+||..+|+++..+....-...++
T Consensus 22 ~l~~v~~va~d--~~----G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~g 95 (329)
T 3fvz_A 22 LPGQVSGVALD--SK----NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHG 95 (329)
T ss_dssp CCSCEEEEEEC--TT----CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEE
T ss_pred ecCCceEEEEC--CC----CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceE
Confidence 46889999999 98 6777776643 79999999999876654333346889
Q ss_pred EEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeec---------cCCCCcEEEEEEe
Q 003423 71 ISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL---------PRLSHWVFDVCFL 141 (821)
Q Consensus 71 i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~h~~~I~~~~~~ 141 (821)
+++++++ ..+++-.+++.|++|+.+... ..+..+ .++-....+++++
T Consensus 96 ia~d~~g----------~l~v~d~~~~~v~~~~~~g~~--------------~~~~~~~~~~~~g~~~~~~~~P~~ia~~ 151 (329)
T 3fvz_A 96 LSIDTDG----------NYWVTDVALHQVFKLDPHSKE--------------GPLLILGRSMQPGSDQNHFCQPTDVAVE 151 (329)
T ss_dssp EEECTTS----------CEEEEETTTTEEEEECTTCSS--------------CCSEEESBTTBCCCSTTCCSSEEEEEEC
T ss_pred EEECCCC----------CEEEEECCCCEEEEEeCCCCe--------------EEEEEecccCCCCCCccccCCCcEEEEe
Confidence 9998664 234444457899999865321 012222 3445578999999
Q ss_pred ecCCCCCEEEEEE-CCCcEEEEEccCCceeEEEccCc---------ceeEEEEeeccCCcc-CeEEEEEeeCCEEEEEEc
Q 003423 142 KVCNGNRSLAIGC-SDNSIRVWDISNSSIILEVHSPE---------RCLLYSMKLWGDNLE-ALRIASGTIYNEIIVWKV 210 (821)
Q Consensus 142 ~~~~~~~~l~t~~-~d~~i~iwd~~~~~~~~~~~~~~---------~~~~~s~~~~~~s~~-~~~l~sg~~dg~i~vwd~ 210 (821)
| .++.++++.+ .++.|++|| .++..+..+.... -.....+++ +++ +.++++...++.|++|+.
T Consensus 152 ~--~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~---d~~~g~l~v~d~~~~~I~~~~~ 225 (329)
T 3fvz_A 152 P--STGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLAL---VPHLDQLCVADRENGRIQCFKT 225 (329)
T ss_dssp T--TTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEE---ETTTTEEEEEETTTTEEEEEET
T ss_pred C--CCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEE---ECCCCEEEEEECCCCEEEEEEC
Confidence 7 1456666665 589999999 5677666654221 112455555 466 778888888999999998
Q ss_pred ccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE--ecCCCcEEEEEEcC------CCCEEEEEeCCCeEEE
Q 003423 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL--VGHEGSIFRIEWSS------CGSKLVSVSDDRSARI 282 (821)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~I~~l~~s~------~~~~l~s~s~Dg~i~i 282 (821)
. +++.+..+ .++...+.+++|+| +++..++...+.+|++
T Consensus 226 ~---------------------------------~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~ 272 (329)
T 3fvz_A 226 D---------------------------------TKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFV 272 (329)
T ss_dssp T---------------------------------TCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEE
T ss_pred C---------------------------------CCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEE
Confidence 7 34445555 34667889999999 3333333344568999
Q ss_pred EecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcCCC
Q 003423 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDG 337 (821)
Q Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~~ 337 (821)
||..+++. ...+. ...++...+.+++++ +..+++...++.|++|++++
T Consensus 273 ~~~~~g~~-----~~~~~--~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 273 MNFSSGEI-----IDVFK--PVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EETTTCCE-----EEEEC--CSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEcCCCeE-----EEEEc--CCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 99988765 32110 013566678999998 35777778899999999854
No 173
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.41 E-value=1.4e-10 Score=120.36 Aligned_cols=201 Identities=8% Similarity=0.077 Sum_probs=142.5
Q ss_pred CCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc-eeEEEcc--------CcceeEEEEeeccCCc-cCeEEEEE
Q 003423 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-IILEVHS--------PERCLLYSMKLWGDNL-EALRIASG 199 (821)
Q Consensus 130 ~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~--------~~~~~~~s~~~~~~s~-~~~~l~sg 199 (821)
++-.....++++| +|+++++...++.|++||..... .+..+.. ..-.....+++ ++ ++.++++.
T Consensus 88 ~~~~~p~gia~d~---~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~---~~~~g~lyv~d 161 (329)
T 3fvz_A 88 NLFYLPHGLSIDT---DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAV---EPSTGAVFVSD 161 (329)
T ss_dssp TTCSSEEEEEECT---TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEE---CTTTCCEEEEE
T ss_pred CccCCceEEEECC---CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEE---eCCCCeEEEEe
Confidence 4446789999999 99988888888999999976542 4555531 11123455666 45 67777777
Q ss_pred e-eCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEe----------cCCCcEEEEEEcCC-
Q 003423 200 T-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV----------GHEGSIFRIEWSSC- 267 (821)
Q Consensus 200 ~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~h~~~I~~l~~s~~- 267 (821)
+ .++.|++|+.. +..+..+. ++-....+|+++|+
T Consensus 162 ~~~~~~I~~~~~~----------------------------------g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~ 207 (329)
T 3fvz_A 162 GYCNSRIVQFSPS----------------------------------GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL 207 (329)
T ss_dssp CSSCCEEEEECTT----------------------------------SCEEEEECEECCSSSCCTTEESCEEEEEEETTT
T ss_pred CCCCCeEEEEcCC----------------------------------CCEEEEeccCCCCCCCCCcccCCCcEEEEECCC
Confidence 6 68999999954 12222222 22345889999998
Q ss_pred CCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEe--------CCCeEEEEcC-CCc
Q 003423 268 GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAG--------EDCTCRVWGS-DGK 338 (821)
Q Consensus 268 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~--------~dg~i~iwd~-~~~ 338 (821)
++++++...++.|++||..+++. ...+ ....+...+++++|++..++... .+..+++|+. +++
T Consensus 208 g~l~v~d~~~~~I~~~~~~~G~~-----~~~~---~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~ 279 (329)
T 3fvz_A 208 DQLCVADRENGRIQCFKTDTKEF-----VREI---KHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGE 279 (329)
T ss_dssp TEEEEEETTTTEEEEEETTTCCE-----EEEE---CCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCC
T ss_pred CEEEEEECCCCEEEEEECCCCcE-----EEEE---eccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCe
Confidence 77788888899999999986654 2211 12345667888888865444432 3458999997 788
Q ss_pred eeeEee---cccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 339 QLKMIK---EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 339 ~~~~~~---~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
.+..+. .+.. ....++++|+|.++++...++.|++|++++
T Consensus 280 ~~~~~~~~~~~~~-~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 280 IIDVFKPVRKHFD-MPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEECCSSSCCS-SEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEEEcCCCCccC-CeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 887773 4444 589999999998888888999999999854
No 174
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.40 E-value=3.1e-10 Score=117.71 Aligned_cols=267 Identities=7% Similarity=-0.073 Sum_probs=178.1
Q ss_pred CCCCCcceeeccceeee-------------eeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeecccc
Q 003423 2 GKKDLSEWRLDVGQYLG-------------EISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIR 67 (821)
Q Consensus 2 ~~~~i~~w~~~~~~~~~-------------~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~ 67 (821)
++++|.++|..+++... ....+++. .+ ++.++.. ++.|.+||.++++.+.++.. ...
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~-----~lyv~~~~~~~v~viD~~t~~~~~~i~~--~~~ 85 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DG-----IGWIVVNNSHVIFAIDINTFKEVGRITG--FTS 85 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TT-----EEEEEEGGGTEEEEEETTTCCEEEEEEC--CSS
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CC-----EEEEEEcCCCEEEEEECcccEEEEEcCC--CCC
Confidence 47789999999887332 24567776 43 4444444 79999999999999998864 345
Q ss_pred EEeEEeccccCCCCCCccceeeEEEEE-cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCC-----CcEEEEEEe
Q 003423 68 LHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS-----HWVFDVCFL 141 (821)
Q Consensus 68 i~~i~~~~~~~~~~~~~~~~~~~l~~~-g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~I~~~~~~ 141 (821)
.+++.+++++ .++++. .++.|.+||.... +....+.... .....+++
T Consensus 86 p~~i~~~~~g-----------~lyv~~~~~~~v~~iD~~t~---------------~~~~~i~~g~~~~~~~~p~~i~~- 138 (328)
T 3dsm_A 86 PRYIHFLSDE-----------KAYVTQIWDYRIFIINPKTY---------------EITGYIECPDMDMESGSTEQMVQ- 138 (328)
T ss_dssp EEEEEEEETT-----------EEEEEEBSCSEEEEEETTTT---------------EEEEEEECTTCCTTTCBCCCEEE-
T ss_pred CcEEEEeCCC-----------eEEEEECCCCeEEEEECCCC---------------eEEEEEEcCCccccCCCcceEEE-
Confidence 8888887542 344444 6899999997643 2232332211 24556776
Q ss_pred ecCCCCCEEEEEE-CCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeC----------CEEEEEEc
Q 003423 142 KVCNGNRSLAIGC-SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY----------NEIIVWKV 210 (821)
Q Consensus 142 ~~~~~~~~l~t~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d----------g~i~vwd~ 210 (821)
. ++.++++.. .++.|.++|..+++.+.++...... ..+.+ ++++.++++...+ +.|.++|.
T Consensus 139 ~---~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p--~~i~~---~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~ 210 (328)
T 3dsm_A 139 Y---GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQP--TSLVM---DKYNKMWTITDGGYEGSPYGYEAPSLYRIDA 210 (328)
T ss_dssp E---TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCB--CCCEE---CTTSEEEEEBCCBCTTCSSCBCCCEEEEEET
T ss_pred E---CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCc--cceEE---cCCCCEEEEECCCccCCccccCCceEEEEEC
Confidence 4 666555544 4889999999999888777643321 12233 4778877776554 78999998
Q ss_pred ccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCc
Q 003423 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH-EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (821)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~ 289 (821)
. +.+....+.-. ......++|+|++++|..+.. .|.+||..+++
T Consensus 211 ~---------------------------------t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~ 255 (328)
T 3dsm_A 211 E---------------------------------TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADR 255 (328)
T ss_dssp T---------------------------------TTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSS
T ss_pred C---------------------------------CCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCc
Confidence 7 44444444422 236889999999998887754 89999998765
Q ss_pred ccCCCCceeeeceEEeccceeEEEEEEcC---CEEEEE----eCCCeEEEEcCCCceeeEeecccCCCeEEEEEe
Q 003423 290 WKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITA----GEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYD 357 (821)
Q Consensus 290 ~~~~~~~~~~~~~~~~~h~~~i~~v~~~~---~~l~s~----~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~ 357 (821)
. .. . ..........+.+++++ ..+++. ..++.|.+||.+|+.+.++..... -..++|-
T Consensus 256 ~-----~~-~--~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~~G~~--P~~~~~~ 320 (328)
T 3dsm_A 256 V-----PV-R--PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVGII--PGAFCWK 320 (328)
T ss_dssp C-----CS-S--CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEEEEES--EEEEEEE
T ss_pred e-----ee-e--eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEEeccC--cceEEEe
Confidence 4 11 0 01111245678899973 455555 578999999999998888875443 5666663
No 175
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.40 E-value=1.1e-09 Score=111.90 Aligned_cols=276 Identities=7% Similarity=-0.065 Sum_probs=177.2
Q ss_pred eeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEe-eccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQV-FHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 17 ~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~-~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
...+.++++. |+ +.+.++.. ++.|.+||.. ++.. .+.. .....++++.+.+++ ..+++..
T Consensus 14 ~~~~~~i~~d--~~----g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g----------~l~v~~~ 75 (299)
T 2z2n_A 14 DTGPYGITVS--DK----GKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDG----------EVWFTEN 75 (299)
T ss_dssp SCCEEEEEEC--TT----SCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTS----------CEEEEET
T ss_pred CCCccceEEC--CC----CCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCC----------CEEEeCC
Confidence 3568999999 88 56666665 6899999988 6543 3332 133568889888553 2333333
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEc
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 174 (821)
+++.|..|+.. +. .. ...+......+.++++.| ++.++++...++.|.+||. +++......
T Consensus 76 ~~~~i~~~~~~-g~-------------~~-~~~~~~~~~~~~~i~~~~---~g~l~v~~~~~~~i~~~d~-~g~~~~~~~ 136 (299)
T 2z2n_A 76 AANKIGRITKK-GI-------------IK-EYTLPNPDSAPYGITEGP---NGDIWFTEMNGNRIGRITD-DGKIREYEL 136 (299)
T ss_dssp TTTEEEEECTT-SC-------------EE-EEECSSTTCCEEEEEECT---TSCEEEEETTTTEEEEECT-TCCEEEEEC
T ss_pred CCCeEEEECCC-Cc-------------EE-EEeCCCcCCCceeeEECC---CCCEEEEecCCceEEEECC-CCCEEEecC
Confidence 46788888754 11 11 112233456789999998 8888777767889999998 554432221
Q ss_pred cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEec
Q 003423 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (821)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (821)
.........+.+ ++++.+.++...++.|..||.. . ... ...+..
T Consensus 137 ~~~~~~~~~i~~---~~~g~l~v~~~~~~~i~~~~~~-g-------------------------------~~~-~~~~~~ 180 (299)
T 2z2n_A 137 PNKGSYPSFITL---GSDNALWFTENQNNAIGRITES-G-------------------------------DIT-EFKIPT 180 (299)
T ss_dssp SSTTCCEEEEEE---CTTSCEEEEETTTTEEEEECTT-C-------------------------------CEE-EEECSS
T ss_pred CCCCCCCceEEE---cCCCCEEEEeCCCCEEEEEcCC-C-------------------------------cEE-EeeCCC
Confidence 212233455555 4677777776667889999874 1 111 112233
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEE
Q 003423 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRV 332 (821)
Q Consensus 255 h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~i 332 (821)
+...+.++++.+++++.++...++.|.+||. ++.. .. .....+...+.++++. +..+++...++.|..
T Consensus 181 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~------~~---~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 250 (299)
T 2z2n_A 181 PASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI------TE---FKIPTPNARPHAITAGAGIDLWFTEWGANKIGR 250 (299)
T ss_dssp TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE------EE---EECSSTTCCEEEEEECSTTCEEEEETTTTEEEE
T ss_pred CCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE------EE---EECCCCCCCceeEEECCCCCEEEeccCCceEEE
Confidence 4566889999999998887777889999998 5433 11 1223345678899997 354455447789999
Q ss_pred EcCCCceeeEee--cccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 333 WGSDGKQLKMIK--EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 333 wd~~~~~~~~~~--~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
|+.+++ +..+. .+.. .+.++++ +++++.++.. .+.|..++.++
T Consensus 251 ~d~~g~-~~~~~~~~~~~-~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 251 LTSNNI-IEEYPIQIKSA-EPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp EETTTE-EEEEECSSSSC-CEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred ECCCCc-eEEEeCCCCCC-ccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 998664 33332 2333 5889999 8887666654 56677777643
No 176
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.39 E-value=1.8e-10 Score=120.07 Aligned_cols=272 Identities=11% Similarity=0.024 Sum_probs=169.3
Q ss_pred eeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEE-EcC
Q 003423 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGE 96 (821)
Q Consensus 18 ~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~-~g~ 96 (821)
..|.+++|+ |+ +..+...+.++.++.| .++....+..... .+.++.|++++ .++++ ..+
T Consensus 6 ~~~~~~~~~--~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~g-----------~l~~~~~~~ 65 (333)
T 2dg1_A 6 QDLPTLFYS--GK---SNSAVPIISESELQTI---TAEPWLEISKKGL-QLEGLNFDRQG-----------QLFLLDVFE 65 (333)
T ss_dssp CCCCBCCSC--GG---GGCSSCCCCGGGSCEE---ECEEEEEEESSCC-CEEEEEECTTS-----------CEEEEETTT
T ss_pred cccceeeec--CC---ccceeEEeecccCccc---ccceeEEEeccCc-cccCcEECCCC-----------CEEEEECCC
Confidence 457788888 76 2333333557888888 4555555554333 46888888553 34443 456
Q ss_pred CeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECC----CcEEEEEccCCceeEE
Q 003423 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD----NSIRVWDISNSSIILE 172 (821)
Q Consensus 97 ~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d----~~i~iwd~~~~~~~~~ 172 (821)
+.|.+|+...+. .......+...+.+++++| ++++++++..+ +.|.+||..++.....
T Consensus 66 ~~i~~~d~~~~~---------------~~~~~~~~~~~~~~i~~~~---dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~ 127 (333)
T 2dg1_A 66 GNIFKINPETKE---------------IKRPFVSHKANPAAIKIHK---DGRLFVCYLGDFKSTGGIFAATENGDNLQDI 127 (333)
T ss_dssp CEEEEECTTTCC---------------EEEEEECSSSSEEEEEECT---TSCEEEEECTTSSSCCEEEEECTTSCSCEEE
T ss_pred CEEEEEeCCCCc---------------EEEEeeCCCCCcceEEECC---CCcEEEEeCCCCCCCceEEEEeCCCCEEEEE
Confidence 889999865332 1222224567899999999 99887776665 6899999887765433
Q ss_pred Ecc-CcceeEEEEeeccCCccCeEEEEEee------CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccc
Q 003423 173 VHS-PERCLLYSMKLWGDNLEALRIASGTI------YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (821)
Q Consensus 173 ~~~-~~~~~~~s~~~~~~s~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (821)
+.. .....+..+.+ ++++.++++... .+.|..++.. .
T Consensus 128 ~~~~~~~~~~~~i~~---d~~g~l~v~~~~~~~~~~~~~l~~~~~~---------------------------------~ 171 (333)
T 2dg1_A 128 IEDLSTAYCIDDMVF---DSKGGFYFTDFRGYSTNPLGGVYYVSPD---------------------------------F 171 (333)
T ss_dssp ECSSSSCCCEEEEEE---CTTSCEEEEECCCBTTBCCEEEEEECTT---------------------------------S
T ss_pred EccCccCCcccceEE---CCCCCEEEEeccccccCCCceEEEEeCC---------------------------------C
Confidence 331 12233555655 467777666543 2445555443 1
Q ss_pred eeeEEEEecCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEeccc-CcccCCCCceeeec---eEEeccceeEEEEEEc--C
Q 003423 246 AVNLFRLVGHEGSIFRIEWSSCGSKL-VSVSDDRSARIWEVRA-EYWKDSDSIEEVGS---SVLYGHNARVWDCCLT--D 318 (821)
Q Consensus 246 ~~~~~~~~~h~~~I~~l~~s~~~~~l-~s~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~---~~~~~h~~~i~~v~~~--~ 318 (821)
.. +..+..+...+.+++|+|+++.| ++.+.++.|.+||+.+ +.. ...... ....++ ..+..+++. +
T Consensus 172 ~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~-----~~~~~~~~~~~~~~~-~~~~~i~~d~~G 244 (333)
T 2dg1_A 172 RT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT-----IQPFGATIPYYFTGH-EGPDSCCIDSDD 244 (333)
T ss_dssp CC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS-----EEEEEEEEEEECCSS-SEEEEEEEBTTC
T ss_pred CE-EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcC-----cccccceEEEecCCC-CCCCceEECCCC
Confidence 11 11222334457899999999865 5556678999999964 222 111100 011122 356788887 4
Q ss_pred CEEEEEeCCCeEEEEcCCCceeeEeecccCC-----CeEEEEEecCCCEEEEEeCCC
Q 003423 319 SFIITAGEDCTCRVWGSDGKQLKMIKEHIGR-----GIWRCLYDSLSSLLVTAGFDS 370 (821)
Q Consensus 319 ~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~-----~i~~l~~~~~~~~l~tg~~dg 370 (821)
+++++...++.|.+|+.+++.+..+..+... .+.+++|+|+++.|+.++.++
T Consensus 245 ~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 245 NLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp CEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 6666666789999999988877777654320 378999999987777666553
No 177
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.38 E-value=1.4e-10 Score=133.57 Aligned_cols=243 Identities=9% Similarity=-0.051 Sum_probs=151.3
Q ss_pred cEEeEEeccccCCCCCCccceeeEEEEE---cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEE-------
Q 003423 67 RLHGISCNFINCTEGSVSTRVTFEVALF---GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVF------- 136 (821)
Q Consensus 67 ~i~~i~~~~~~~~~~~~~~~~~~~l~~~---g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~------- 136 (821)
.+..++++++. ..++.. .++...||....+ .....+..|...+.
T Consensus 25 ~~~~~~~s~~~-----------~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~l~~~~~~~~~~~~~~~ 78 (662)
T 3azo_A 25 RPACVGAVGDE-----------VWWVAPRPAEAGRATLVRRRAD---------------GAEESALPAPWNVRNRVFEYS 78 (662)
T ss_dssp CCEEEEEETTE-----------EEEEEEETTTTTEEEEEEECTT---------------SCEEESSCTTCCBCCCGGGTC
T ss_pred ccceeEEcCCe-----------EEEEecCcccCCcEEEEEECCC---------------CCcceeCCCCccccccccccC
Confidence 57777777542 233333 2678999997322 12344555555555
Q ss_pred --EEEEe--ecCCCCCE-EEEEEC-CCcEEEEEcc--CCceeEEEccC----cceeEEEEeeccCCccCeEEEEEeeC--
Q 003423 137 --DVCFL--KVCNGNRS-LAIGCS-DNSIRVWDIS--NSSIILEVHSP----ERCLLYSMKLWGDNLEALRIASGTIY-- 202 (821)
Q Consensus 137 --~~~~~--~~~~~~~~-l~t~~~-d~~i~iwd~~--~~~~~~~~~~~----~~~~~~s~~~~~~s~~~~~l~sg~~d-- 202 (821)
...|+ | ||+. |+.++. +..|.+|++. .......+... ......++.| +||+..|+.++.+
T Consensus 79 ~~~~~~~~SP---Dg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~---spDg~~l~~~~~~~~ 152 (662)
T 3azo_A 79 GFPWAGVPRP---AGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVL---LPERGEVWCMAEEFT 152 (662)
T ss_dssp CCCEEEECCS---SSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEE---ETTTTEEEEEEEEEC
T ss_pred Cccceeeeec---CCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEE---CCCCCEEEEEEeccc
Confidence 55565 8 9988 775543 4456666654 20344455442 2333445555 6899999988877
Q ss_pred --------CEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEe-cCCCcEEEEEEcCCCCEEEE
Q 003423 203 --------NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSSCGSKLVS 273 (821)
Q Consensus 203 --------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~I~~l~~s~~~~~l~s 273 (821)
..|++||+.+... ..... ...+. .+...+..++|+|||++|+.
T Consensus 153 ~~~~~~~~~~i~~~~~~~~~~---------------------------~~~~~-~~~l~~~~~~~~~~~~~SpDG~~la~ 204 (662)
T 3azo_A 153 GEGPSDVRRFLAAVPLDGSAA---------------------------ADRSA-VRELSDDAHRFVTGPRLSPDGRQAVW 204 (662)
T ss_dssp SSSTTCEEEEEEEEETTSTTT---------------------------TCGGG-SEESSCSCSSEECCCEECTTSSEEEE
T ss_pred CCCCCCceeEEEEEECCCCcc---------------------------ccCCc-eeEEEecCCCcccCceECCCCCEEEE
Confidence 5899999871000 00012 22344 55677888999999999998
Q ss_pred EeCCC--------eEEEEecc-cCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCC--eEEEEcCCCcee
Q 003423 274 VSDDR--------SARIWEVR-AEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC--TCRVWGSDGKQL 340 (821)
Q Consensus 274 ~s~Dg--------~i~iwd~~-~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg--~i~iwd~~~~~~ 340 (821)
++.++ .|++||+. ++.. .+.. ....+|...+..+.|+ +++++++..++ .|.+|++++...
T Consensus 205 ~~~~~~~~~~~~~~i~~~d~~~~g~~-----~~~~--~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~ 277 (662)
T 3azo_A 205 LAWDHPRMPWEGTELKTARVTEDGRF-----ADTR--TLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA 277 (662)
T ss_dssp EEECTTCCTTTCEEEEEEEECTTSCE-----EEEE--EEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCE
T ss_pred EECCCCCCCCCCcEEEEEEECCCCcc-----cccE--EeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCce
Confidence 87553 79999998 4511 0111 2334557889999998 46777888888 566666633333
Q ss_pred eEeecccCCC--------eEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 341 KMIKEHIGRG--------IWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 341 ~~~~~h~~~~--------i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
..+..+.... +..++++|++++++++.. +.+++|.+
T Consensus 278 ~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 278 TQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp EESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred eecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 3333222211 457889999999999998 99999955
No 178
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.36 E-value=1.1e-11 Score=132.86 Aligned_cols=271 Identities=11% Similarity=-0.022 Sum_probs=159.2
Q ss_pred eEEEEEeccCCCCCCcceEEeec----CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEc
Q 003423 20 ISALCFVHLPSHLSSLPFLLAGS----GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (821)
Q Consensus 20 Vt~l~~~~~p~~~~~~~~l~~g~----~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g 95 (821)
+..++|+ || +++|+... +..|.+||+.+++...... ........+.|+|++ + .++.+..
T Consensus 38 ~~~~~~S--pd----G~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~spdg-------~---~l~~~~~ 100 (396)
T 3c5m_A 38 FYQKCFT--QD----GKKLLFAGDFDGNRNYYLLNLETQQAVQLTE-GKGDNTFGGFISTDE-------R---AFFYVKN 100 (396)
T ss_dssp TTSCCBC--TT----SCEEEEEECTTSSCEEEEEETTTTEEEECCC-SSCBCTTTCEECTTS-------S---EEEEEET
T ss_pred eecCcCC--CC----CCEEEEEEecCCCceEEEEECCCCcEEEeec-CCCCccccceECCCC-------C---EEEEEEc
Confidence 6778899 99 56655543 2479999999987643322 222112235677553 2 4555666
Q ss_pred CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEE-------------------EEEeecCCCCCEEEEE---
Q 003423 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFD-------------------VCFLKVCNGNRSLAIG--- 153 (821)
Q Consensus 96 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~-------------------~~~~~~~~~~~~l~t~--- 153 (821)
++.|.+|++..+. .......+..+..+ ++|+| +++.++.+
T Consensus 101 ~~~l~~~d~~~~~---------------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp---dg~~~~~~~~~ 162 (396)
T 3c5m_A 101 ELNLMKVDLETLE---------------EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP---LTSWEKFAEFY 162 (396)
T ss_dssp TTEEEEEETTTCC---------------EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC---CCSHHHHHHHH
T ss_pred CCcEEEEECCCCC---------------cEEEEecccccCCCCCEEEeccCCccccccccccccCC---CCcceeeeeec
Confidence 7789999876432 11222223334333 35566 77766544
Q ss_pred --ECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCc-cCeEEEEEeeC------CEEEEEEcccCCcccCCCCCCC
Q 003423 154 --CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-EALRIASGTIY------NEIIVWKVDWEHVAPLLNSPEG 224 (821)
Q Consensus 154 --~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~-~~~~l~sg~~d------g~i~vwd~~~~~~~~~~~~~~~ 224 (821)
..+..|.+||+.+++........ ..+..+.+ ++ ++..|+..+.+ ..|.+|+..
T Consensus 163 ~~~~~~~l~~~d~~~g~~~~~~~~~--~~~~~~~~---sp~dg~~l~~~~~~~~~~~~~~l~~~d~~------------- 224 (396)
T 3c5m_A 163 HTNPTCRLIKVDIETGELEVIHQDT--AWLGHPIY---RPFDDSTVGFCHEGPHDLVDARMWLVNED------------- 224 (396)
T ss_dssp HTCCCEEEEEEETTTCCEEEEEEES--SCEEEEEE---ETTEEEEEEEEECSCSSSCSCCCEEEETT-------------
T ss_pred cCCCcceEEEEECCCCcEEeeccCC--cccccceE---CCCCCCEEEEEecCCCCCCCceEEEEECC-------------
Confidence 35678999999887764433222 12334444 46 67666655433 357777765
Q ss_pred cccCCCCCCcceeeecccccceeeEEEEecC--CCcEEEEEEcCCCCEEEEEeCC-----CeEEEEecccCcccCCCCce
Q 003423 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH--EGSIFRIEWSSCGSKLVSVSDD-----RSARIWEVRAEYWKDSDSIE 297 (821)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~I~~l~~s~~~~~l~s~s~D-----g~i~iwd~~~~~~~~~~~~~ 297 (821)
... ...+..+ ...+..++|+|+|++|+.++.+ +.|.+||+.+++. .
T Consensus 225 --------------------~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~------~ 277 (396)
T 3c5m_A 225 --------------------GSN-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN------E 277 (396)
T ss_dssp --------------------SCC-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE------E
T ss_pred --------------------CCc-eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe------E
Confidence 111 1112222 2357889999999988777554 4599999987654 1
Q ss_pred eeeceEEeccceeEEEEEEc---CCEEEEEe----------------CCCeEEEEcCCCceeeEeecccCC---------
Q 003423 298 EVGSSVLYGHNARVWDCCLT---DSFIITAG----------------EDCTCRVWGSDGKQLKMIKEHIGR--------- 349 (821)
Q Consensus 298 ~~~~~~~~~h~~~i~~v~~~---~~~l~s~~----------------~dg~i~iwd~~~~~~~~~~~h~~~--------- 349 (821)
.+..... .. +.|+ +.++++++ .+..|.+||+.+.....+..+...
T Consensus 278 -----~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 350 (396)
T 3c5m_A 278 -----EVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQ 350 (396)
T ss_dssp -----EEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSS
T ss_pred -----EeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccccccccc
Confidence 1111111 12 5664 35666654 347899999954444555555431
Q ss_pred -CeEEEEEecCCCEEEEEeC-CCcEEEEEc
Q 003423 350 -GIWRCLYDSLSSLLVTAGF-DSAIKVHQF 377 (821)
Q Consensus 350 -~i~~l~~~~~~~~l~tg~~-dg~I~iwd~ 377 (821)
.+..++|+|+|+.|+..+. ++...+|.+
T Consensus 351 ~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 351 ITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp TTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 1456789999998877664 566666655
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.36 E-value=1.1e-10 Score=122.57 Aligned_cols=248 Identities=6% Similarity=0.027 Sum_probs=155.5
Q ss_pred CCCCcceeeccce--eeeeeEEEEEeccCCCCCCcceEEeec-C---C--eEEEEECCCCeeeeEEEeeccccEEeEEec
Q 003423 3 KKDLSEWRLDVGQ--YLGEISALCFVHLPSHLSSLPFLLAGS-G---S--QVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (821)
Q Consensus 3 ~~~i~~w~~~~~~--~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~---~--~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~ 74 (821)
++.|.+|++.+++ ....+..++|+ || +++|+... + + .|.+||+.+++....... .. +..+.|+
T Consensus 42 ~~~l~~~d~~~~~~~~l~~~~~~~~S--pD----g~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~--~~~~~ws 112 (347)
T 2gop_A 42 ENTIVIENLKNNARRFIENATMPRIS--PD----GKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN--IRSLEWN 112 (347)
T ss_dssp EEEEEEEETTTCCEEEEESCEEEEEC--TT----SSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE--EEEEEEC
T ss_pred cceEEEEeCCCCceEEcccCCCeEEC--CC----CCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC--ccceeEC
Confidence 3457788888775 23668889999 99 55555543 2 2 488899998886654443 22 8889999
Q ss_pred cccCCCCCCccceeeEEEEEc---------------------------CCeEEEEEEeecCCCCCCCCCccccccceeee
Q 003423 75 FINCTEGSVSTRVTFEVALFG---------------------------EKRVKLFELNFELSPNSQYQPETCVNLSLVQS 127 (821)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~~~g---------------------------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (821)
|++ + .++.+.. ...|.+|++..+ +.+..
T Consensus 113 pdg-------~---~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~---------------~~~~~ 167 (347)
T 2gop_A 113 EDS-------R---KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE---------------EVIEE 167 (347)
T ss_dssp TTS-------S---EEEEEEECCCC---------CCCC---------CEEEEEEEETTTT---------------EEEEE
T ss_pred CCC-------C---EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC---------------eEEee
Confidence 663 2 3333331 245666666432 12122
Q ss_pred ccCCCCcEEEEEEeecCCCCCEEEEEECCC-------cEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEe
Q 003423 128 LPRLSHWVFDVCFLKVCNGNRSLAIGCSDN-------SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (821)
Q Consensus 128 ~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (821)
+.. . .+..++|+| +| +++++..+. ...||.+.+++ ...+..+ ....++ +|++..|+.++
T Consensus 168 l~~-~-~~~~~~~sp---dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~--~~~~~~-----spdg~~l~~~~ 233 (347)
T 2gop_A 168 FEK-P-RFSSGIWHR---DK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK--VSFYAV-----DSDGERILLYG 233 (347)
T ss_dssp EEE-E-TTCEEEEET---TE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE--ESEEEE-----EECSSCEEEEE
T ss_pred ecC-C-CcccccCCC---Ce-EEEEEecccccccccccccEEEeCCCc-eEEeccC--cceeeE-----CCCCCEEEEEE
Confidence 322 2 678899999 99 777776542 45666555443 3334332 222222 57888887766
Q ss_pred eC--------CEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEE-EEEcCCCCEE
Q 003423 201 IY--------NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFR-IEWSSCGSKL 271 (821)
Q Consensus 201 ~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~-l~~s~~~~~l 271 (821)
.+ ..|.+|| . . .......+|...+.. +.|+ ++ ++
T Consensus 234 ~~~~~~~~~~~~l~~~d-~---------------------------------~-~~~~l~~~~~~~~~~~~~~s-dg-~~ 276 (347)
T 2gop_A 234 KPEKKYMSEHNKLYIYD-G---------------------------------K-EVMGILDEVDRGVGQAKIKD-GK-VY 276 (347)
T ss_dssp CCSSSCCCSSCEEEEEC-S---------------------------------S-CEEESSTTCCSEEEEEEEET-TE-EE
T ss_pred ccccCCccccceEEEEC-C---------------------------------C-ceEeccccCCcccCCccEEc-Cc-EE
Confidence 43 4677777 4 1 112222456777886 9999 88 99
Q ss_pred EEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeE-EEEcCCCceeeEeecccC
Q 003423 272 VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTC-RVWGSDGKQLKMIKEHIG 348 (821)
Q Consensus 272 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i-~iwd~~~~~~~~~~~h~~ 348 (821)
++++.|+.++|| +.+++. ..+..+...|.++.|++..+++++.++.. .+|.++ .....+..+..
T Consensus 277 ~~~~~~~~~~l~-~~~g~~-----------~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~-g~~~~lt~~n~ 341 (347)
T 2gop_A 277 FTLFEEGSVNLY-IWDGEI-----------KPIAKGRHWIMGFDVDEIVVYLKETATRLRELFTWD-GEEKQLTDYND 341 (347)
T ss_dssp EEEEETTEEEEE-EESSSE-----------EEEECSSSEEEEEEESSSEEEEEECSSSCCEEEEES-SSEEECCCTTS
T ss_pred EEEecCCcEEEE-EcCCce-----------EEEecCCCeEEeeeeeCcEEEEEcCCCChHHheEeC-CcEEEeccccH
Confidence 999999999999 874332 24445577899999988566677777654 677665 33445555443
No 180
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.35 E-value=5.8e-11 Score=127.17 Aligned_cols=259 Identities=8% Similarity=-0.107 Sum_probs=150.2
Q ss_pred eEEEEECCCCeeeeEEEeeccc----cEEeEEeccccCCCCCCccceeeEEEEEc-C--CeEEEEEEeecCCCCCCCCCc
Q 003423 45 QVLLYDLEAGTLIRPFQVFHGI----RLHGISCNFINCTEGSVSTRVTFEVALFG-E--KRVKLFELNFELSPNSQYQPE 117 (821)
Q Consensus 45 ~i~iwd~~t~~~~~~~~~~~~~----~i~~i~~~~~~~~~~~~~~~~~~~l~~~g-~--~~v~i~~~~~~~~~~~~~~~~ 117 (821)
.....|..+|+.+.++...... .+..++|+|+ ++ .++.+.. + ..+.+|++..+
T Consensus 11 ~~~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~Spd-------G~---~l~~~~~~~g~~~l~~~d~~~~---------- 70 (396)
T 3c5m_A 11 FETFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQD-------GK---KLLFAGDFDGNRNYYLLNLETQ---------- 70 (396)
T ss_dssp EEEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTT-------SC---EEEEEECTTSSCEEEEEETTTT----------
T ss_pred hheeecCCCCcceEEEecCCCCccceeeecCcCCCC-------CC---EEEEEEecCCCceEEEEECCCC----------
Confidence 4556688888877666542221 1445566644 33 3333332 2 35666665432
Q ss_pred cccccceeeeccCCCCc-EEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeE--EEEee--------
Q 003423 118 TCVNLSLVQSLPRLSHW-VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLL--YSMKL-------- 186 (821)
Q Consensus 118 ~~~~~~~~~~~~~h~~~-I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~s~~~-------- 186 (821)
+ ...+..+... ...+.|+| +|+.|+.++.++.|.+||+.+++.......+..-.. ..+.+
T Consensus 71 -----~-~~~l~~~~~~~~~~~~~sp---dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 141 (396)
T 3c5m_A 71 -----Q-AVQLTEGKGDNTFGGFIST---DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVG 141 (396)
T ss_dssp -----E-EEECCCSSCBCTTTCEECT---TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEE
T ss_pred -----c-EEEeecCCCCccccceECC---CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcccc
Confidence 1 2223333333 33478999 999999999999999999988876544432322000 00111
Q ss_pred -----ccCCccCeEEEEE-----eeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCC
Q 003423 187 -----WGDNLEALRIASG-----TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (821)
Q Consensus 187 -----~~~s~~~~~l~sg-----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 256 (821)
...+|++..++.. ..+..|.+||+. .++.. .+..+.
T Consensus 142 ~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~---------------------------------~g~~~-~~~~~~ 187 (396)
T 3c5m_A 142 IEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIE---------------------------------TGELE-VIHQDT 187 (396)
T ss_dssp EEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETT---------------------------------TCCEE-EEEEES
T ss_pred ccccccccCCCCcceeeeeeccCCCcceEEEEECC---------------------------------CCcEE-eeccCC
Confidence 1123444443332 234566677765 22222 223567
Q ss_pred CcEEEEEEcC-CCCEEEEEeCC------CeEEEEecccCcccCCCCceeeeceEEecc--ceeEEEEEEc--CCEEEEEe
Q 003423 257 GSIFRIEWSS-CGSKLVSVSDD------RSARIWEVRAEYWKDSDSIEEVGSSVLYGH--NARVWDCCLT--DSFIITAG 325 (821)
Q Consensus 257 ~~I~~l~~s~-~~~~l~s~s~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h--~~~i~~v~~~--~~~l~s~~ 325 (821)
..+..+.|+| +++.|+.++.+ ..|.+||+..+.. ..+..+ ...+..+.|+ +++|+..+
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-----------~~l~~~~~~~~~~~~~~spdg~~l~~~~ 256 (396)
T 3c5m_A 188 AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-----------RKIKEHAEGESCTHEFWIPDGSAMAYVS 256 (396)
T ss_dssp SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-----------EESSCCCTTEEEEEEEECTTSSCEEEEE
T ss_pred cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-----------eEeeccCCCccccceEECCCCCEEEEEe
Confidence 7899999999 78877766654 3588888765543 122222 3457888998 45566655
Q ss_pred CC-----CeEEEEcCCCceeeEeecccCCCeEEEEEec-CCCEEEEEe----------------CCCcEEEEEcCCc
Q 003423 326 ED-----CTCRVWGSDGKQLKMIKEHIGRGIWRCLYDS-LSSLLVTAG----------------FDSAIKVHQFQAF 380 (821)
Q Consensus 326 ~d-----g~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~-~~~~l~tg~----------------~dg~I~iwd~~~~ 380 (821)
.+ +.|.+||+.......+....+ .. +.|+| ++++++.++ .++.|.+||+.+.
T Consensus 257 ~~~~~~~~~l~~~d~~~g~~~~l~~~~~--~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 257 YFKGQTDRVIYKANPETLENEEVMVMPP--CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp EETTTCCEEEEEECTTTCCEEEEEECCS--EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred cCCCCccceEEEEECCCCCeEEeeeCCC--CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence 43 459999994333333332222 33 88999 999888765 3467999998653
No 181
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.35 E-value=1.8e-10 Score=119.53 Aligned_cols=260 Identities=8% Similarity=-0.084 Sum_probs=168.8
Q ss_pred CCeEEEEECCCCeeeeEEEee-----ccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCc
Q 003423 43 GSQVLLYDLEAGTLIRPFQVF-----HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPE 117 (821)
Q Consensus 43 ~~~i~iwd~~t~~~~~~~~~~-----~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~ 117 (821)
++.|.+||.++++....+... -+...+++.+... ..+++..+++.|.+||..+.
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~-----------~lyv~~~~~~~v~viD~~t~---------- 74 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDG-----------IGWIVVNNSHVIFAIDINTF---------- 74 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETT-----------EEEEEEGGGTEEEEEETTTC----------
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECC-----------EEEEEEcCCCEEEEEECccc----------
Confidence 589999999999987654210 1123566766532 24555556799999998743
Q ss_pred cccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcce----eEEEEeeccCCccC
Q 003423 118 TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERC----LLYSMKLWGDNLEA 193 (821)
Q Consensus 118 ~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~s~~~~~~s~~~ 193 (821)
+.+..+.. ......++++| ++++.++...++.|.+||..+++....+...... ....+.+ .++
T Consensus 75 -----~~~~~i~~-~~~p~~i~~~~---~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~----~~~ 141 (328)
T 3dsm_A 75 -----KEVGRITG-FTSPRYIHFLS---DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ----YGK 141 (328)
T ss_dssp -----CEEEEEEC-CSSEEEEEEEE---TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE----ETT
T ss_pred -----EEEEEcCC-CCCCcEEEEeC---CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE----ECC
Confidence 34455543 35688999998 8854444447899999999999887776543300 1112332 244
Q ss_pred eEEEEEe-eCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEE
Q 003423 194 LRIASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLV 272 (821)
Q Consensus 194 ~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~ 272 (821)
.+.++.. .++.|.++|.. +.+.+.++.. .....+++++|+|++++
T Consensus 142 ~lyv~~~~~~~~v~viD~~---------------------------------t~~~~~~i~~-g~~p~~i~~~~dG~l~v 187 (328)
T 3dsm_A 142 YVYVNCWSYQNRILKIDTE---------------------------------TDKVVDELTI-GIQPTSLVMDKYNKMWT 187 (328)
T ss_dssp EEEEEECTTCCEEEEEETT---------------------------------TTEEEEEEEC-SSCBCCCEECTTSEEEE
T ss_pred EEEEEcCCCCCEEEEEECC---------------------------------CCeEEEEEEc-CCCccceEEcCCCCEEE
Confidence 4444443 48899999988 4444555543 23456899999999887
Q ss_pred EEeCC----------CeEEEEecccCcccCCCCceeeeceEEe-ccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCc
Q 003423 273 SVSDD----------RSARIWEVRAEYWKDSDSIEEVGSSVLY-GHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGK 338 (821)
Q Consensus 273 s~s~D----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~ 338 (821)
++..+ +.|.++|..+++. .+ .+. ........++++ ++.++.+.. .+.+||. +++
T Consensus 188 ~~~~~~~~~~~~~~~~~v~~id~~t~~v-----~~-----~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~ 255 (328)
T 3dsm_A 188 ITDGGYEGSPYGYEAPSLYRIDAETFTV-----EK-----QFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADR 255 (328)
T ss_dssp EBCCBCTTCSSCBCCCEEEEEETTTTEE-----EE-----EEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSS
T ss_pred EECCCccCCccccCCceEEEEECCCCeE-----EE-----EEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCc
Confidence 77655 7899999987654 21 222 112367889998 467777655 8999998 444
Q ss_pred eeeE-eecccCCCeEEEEEec-CCCEEEEE----eCCCcEEEEEcCCcCC
Q 003423 339 QLKM-IKEHIGRGIWRCLYDS-LSSLLVTA----GFDSAIKVHQFQAFLP 382 (821)
Q Consensus 339 ~~~~-~~~h~~~~i~~l~~~~-~~~~l~tg----~~dg~I~iwd~~~~~~ 382 (821)
.... +..........++++| ++++.++. ..++.|.+||.+++.+
T Consensus 256 ~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~ 305 (328)
T 3dsm_A 256 VPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLI 305 (328)
T ss_dssp CCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEE
T ss_pred eeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEE
Confidence 3221 1111123588999999 45555665 5788999999875433
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.35 E-value=4.8e-10 Score=117.55 Aligned_cols=241 Identities=12% Similarity=0.086 Sum_probs=149.2
Q ss_pred CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEc-C--CeEEEEEEeecCCCCCCCCCccc
Q 003423 43 GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-E--KRVKLFELNFELSPNSQYQPETC 119 (821)
Q Consensus 43 ~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g-~--~~v~i~~~~~~~~~~~~~~~~~~ 119 (821)
++.|.+||+.+++.. .+ ..+..+.|+|++ + .++.+.. + +...||-++...
T Consensus 42 ~~~l~~~d~~~~~~~-~l-----~~~~~~~~SpDg-------~---~la~~~~~~~~~~~~l~~~~~~~----------- 94 (347)
T 2gop_A 42 ENTIVIENLKNNARR-FI-----ENATMPRISPDG-------K---KIAFMRANEEKKVSEIWVADLET----------- 94 (347)
T ss_dssp EEEEEEEETTTCCEE-EE-----ESCEEEEECTTS-------S---EEEEEEEETTTTEEEEEEEETTT-----------
T ss_pred cceEEEEeCCCCceE-Ec-----ccCCCeEECCCC-------C---EEEEEEeccCCCcceEEEEECCC-----------
Confidence 568999999988753 33 357888999664 2 3333332 2 454555444321
Q ss_pred cccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECC---------------------------CcEEEEEccCCceeEE
Q 003423 120 VNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD---------------------------NSIRVWDISNSSIILE 172 (821)
Q Consensus 120 ~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d---------------------------~~i~iwd~~~~~~~~~ 172 (821)
.+. ..+..+.. +..++|+| +++.|+.++.+ ..|.+||+.+++.+..
T Consensus 95 --g~~-~~l~~~~~-~~~~~wsp---dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 167 (347)
T 2gop_A 95 --LSS-KKILEAKN-IRSLEWNE---DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEE 167 (347)
T ss_dssp --TEE-EEEEEESE-EEEEEECT---TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEE
T ss_pred --Cce-EEEEcCCC-ccceeECC---CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEee
Confidence 111 22222334 99999999 99988887642 5689999988876444
Q ss_pred EccCcceeEEEEeeccCCccCeEEEEEeeCC-------EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccc
Q 003423 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYN-------EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (821)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg-------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (821)
+..+ .+..+.+ ++++ +++++..++ ...+|.+. .
T Consensus 168 l~~~---~~~~~~~---spdg-~~~~~~~~~~~~~~~~~~~l~~~d---------------------------------~ 207 (347)
T 2gop_A 168 FEKP---RFSSGIW---HRDK-IVVNVPHREIIPQYFKFWDIYIWE---------------------------------D 207 (347)
T ss_dssp EEEE---TTCEEEE---ETTE-EEEEEECCCSSCCSSCCEEEEEEE---------------------------------T
T ss_pred ecCC---CcccccC---CCCe-EEEEEecccccccccccccEEEeC---------------------------------C
Confidence 4431 2223333 3777 777765542 33444433 1
Q ss_pred eeeEEEEecCCCcEEEEEEcCCCCEEEEEeCC--------CeEEEEecccCcccCCCCceeeeceEEeccceeEEE-EEE
Q 003423 246 AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD--------RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD-CCL 316 (821)
Q Consensus 246 ~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~D--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-v~~ 316 (821)
.. ...+..+ ..+..+ +|+|++|+.++.+ ..|.+|| +++. . ....+|...+.. +.|
T Consensus 208 ~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~------~----~l~~~~~~~~~~~~~~ 271 (347)
T 2gop_A 208 GK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV------M----GILDEVDRGVGQAKIK 271 (347)
T ss_dssp TE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE------E----ESSTTCCSEEEEEEEE
T ss_pred Cc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce------E----eccccCCcccCCccEE
Confidence 11 1222334 555555 9999998877754 3677777 3322 1 223355667776 888
Q ss_pred cCCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcE-EEEEcC
Q 003423 317 TDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAI-KVHQFQ 378 (821)
Q Consensus 317 ~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I-~iwd~~ 378 (821)
++..+++++.++.+++| + +++. ..+..+.+ .|.+++++| .++++++.++.. .+|.++
T Consensus 272 sdg~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~-~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 272 DGKVYFTLFEEGSVNLY-IWDGEI-KPIAKGRH-WIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp TTEEEEEEEETTEEEEE-EESSSE-EEEECSSS-EEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred cCcEEEEEecCCcEEEE-EcCCce-EEEecCCC-eEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 84478888999999999 8 4554 34444455 589999999 677777777765 777765
No 183
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.33 E-value=9.3e-09 Score=104.96 Aligned_cols=273 Identities=11% Similarity=-0.038 Sum_probs=175.5
Q ss_pred ccEEeEEeccccCCCCCCccceeeEEEEE-cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecC
Q 003423 66 IRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (821)
Q Consensus 66 ~~i~~i~~~~~~~~~~~~~~~~~~~l~~~-g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~ 144 (821)
..++++.+.+++ .+.++. +++.|.+|+.. +. .. ...+..+...+.++++.+
T Consensus 15 ~~~~~i~~d~~g-----------~l~v~~~~~~~v~~~d~~-~~-------------~~-~~~~~~~~~~~~~i~~~~-- 66 (299)
T 2z2n_A 15 TGPYGITVSDKG-----------KVWITQHKANMISCINLD-GK-------------IT-EYPLPTPDAKVMCLTISS-- 66 (299)
T ss_dssp CCEEEEEECTTS-----------CEEEEETTTTEEEEECTT-CC-------------EE-EEECSSTTCCEEEEEECT--
T ss_pred CCccceEECCCC-----------CEEEEecCCCcEEEEcCC-CC-------------eE-EecCCcccCceeeEEECC--
Confidence 468888888653 244444 46889999866 32 11 112233456799999998
Q ss_pred CCCCEEEEEECCCcEEEEEccCCceeEEEccC-cceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCC
Q 003423 145 NGNRSLAIGCSDNSIRVWDISNSSIILEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPE 223 (821)
Q Consensus 145 ~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~ 223 (821)
++.+.++...++.|..||.. ++. ..+..+ .......+.+ ++++.+.++...++.|.+||..
T Consensus 67 -~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~---~~~g~l~v~~~~~~~i~~~d~~------------ 128 (299)
T 2z2n_A 67 -DGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITE---GPNGDIWFTEMNGNRIGRITDD------------ 128 (299)
T ss_dssp -TSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEE---CTTSCEEEEETTTTEEEEECTT------------
T ss_pred -CCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEE---CCCCCEEEEecCCceEEEECCC------------
Confidence 88877776667889999976 332 233222 2234556655 4677777777678899999875
Q ss_pred CcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceE
Q 003423 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV 303 (821)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 303 (821)
..........+...+.++++.++++..++...++.|..||. +++. .. ..
T Consensus 129 ---------------------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~------~~---~~ 177 (299)
T 2z2n_A 129 ---------------------GKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDI------TE---FK 177 (299)
T ss_dssp ---------------------CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE------EE---EE
T ss_pred ---------------------CCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE------EE---ee
Confidence 11111122234567899999999988888877889999998 5433 11 11
Q ss_pred EeccceeEEEEEEc--CCEEEEEeCCCeEEEEcCCCceeeE-eecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCc
Q 003423 304 LYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (821)
Q Consensus 304 ~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~~~~~~~-~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~ 380 (821)
...+...+.++++. +...++...++.|..|+.+++.... ...+.. .+.+++++++|++.++...++.|..||.++.
T Consensus 178 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~ 256 (299)
T 2z2n_A 178 IPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTPNA-RPHAITAGAGIDLWFTEWGANKIGRLTSNNI 256 (299)
T ss_dssp CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTC-CEEEEEECSTTCEEEEETTTTEEEEEETTTE
T ss_pred CCCCCCcceeEEECCCCCEEEEccCCceEEEECCCCcEEEEECCCCCC-CceeEEECCCCCEEEeccCCceEEEECCCCc
Confidence 22344567889887 3555555567899999996553322 222223 5889999999986666657788999987421
Q ss_pred CCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEE
Q 003423 381 LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTK 446 (821)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~ 446 (821)
+.....+ .....+.++++ +++.+++++..+.+..++
T Consensus 257 -------------------~~~~~~~----------~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~ 292 (299)
T 2z2n_A 257 -------------------IEEYPIQ----------IKSAEPHGICF-DGETIWFAMECDKIGKLT 292 (299)
T ss_dssp -------------------EEEEECS----------SSSCCEEEEEE-CSSCEEEEETTTEEEEEE
T ss_pred -------------------eEEEeCC----------CCCCccceEEe-cCCCEEEEecCCcEEEEE
Confidence 0011111 11234788899 899998887666666544
No 184
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.32 E-value=1.1e-08 Score=113.04 Aligned_cols=272 Identities=10% Similarity=-0.003 Sum_probs=177.2
Q ss_pred ceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCC
Q 003423 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQY 114 (821)
Q Consensus 36 ~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~ 114 (821)
.++++.. ++.|.++|..+++.+.++... ..+|++.++|++ .+++++..++.|.+||+..+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g--~~p~~v~~SpDG----------r~lyv~~~dg~V~viD~~~~t------ 229 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSASG----------RYLFVIGRDGKVNMIDLWMKE------ 229 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECTTS----------CEEEEEETTSEEEEEETTSSS------
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeCC--CCccceEECCCC----------CEEEEEcCCCeEEEEECCCCC------
Confidence 3444443 699999999999999998853 358899999664 356666678999999984221
Q ss_pred CCccccccceeeeccCCCCcEEEEEEe----ecCCCCCEEEEEEC-CCcEEEEEccCCceeEEEccCc----------ce
Q 003423 115 QPETCVNLSLVQSLPRLSHWVFDVCFL----KVCNGNRSLAIGCS-DNSIRVWDISNSSIILEVHSPE----------RC 179 (821)
Q Consensus 115 ~~~~~~~~~~~~~~~~h~~~I~~~~~~----~~~~~~~~l~t~~~-d~~i~iwd~~~~~~~~~~~~~~----------~~ 179 (821)
.+.+..+.... ....++|+ | +|++++++.. ++.|.++|..+.+.+..+.... ..
T Consensus 230 -------~~~v~~i~~G~-~P~~ia~s~~~~p---DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~ 298 (567)
T 1qks_A 230 -------PTTVAEIKIGS-EARSIETSKMEGW---EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP 298 (567)
T ss_dssp -------CCEEEEEECCS-EEEEEEECCSTTC---TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC
T ss_pred -------CcEeEEEecCC-CCceeEEccccCC---CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCC
Confidence 24455555433 36789999 8 9998877654 6999999999998887765321 11
Q ss_pred eEEEEeeccCCcc-CeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCc
Q 003423 180 LLYSMKLWGDNLE-ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGS 258 (821)
Q Consensus 180 ~~~s~~~~~~s~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 258 (821)
.+..+.. +++ ...+++-...|+|.++|.... ....+..+ .....
T Consensus 299 rva~i~~---s~~~~~~vv~~~~~g~v~~vd~~~~-------------------------------~~~~v~~i-~~~~~ 343 (567)
T 1qks_A 299 RVAAILA---SHYRPEFIVNVKETGKILLVDYTDL-------------------------------NNLKTTEI-SAERF 343 (567)
T ss_dssp CEEEEEE---CSSSSEEEEEETTTTEEEEEETTCS-------------------------------SEEEEEEE-ECCSS
T ss_pred ceEEEEE---cCCCCEEEEEecCCCeEEEEecCCC-------------------------------ccceeeee-ecccc
Confidence 2223322 233 455666667799999998710 11122222 23445
Q ss_pred EEEEEEcCCCCEEEEE-eCCCeEEEEecccCcccCCCCceeeece-EEeccceeEEEEEEcC--C-EEEEEe-CCCeEEE
Q 003423 259 IFRIEWSSCGSKLVSV-SDDRSARIWEVRAEYWKDSDSIEEVGSS-VLYGHNARVWDCCLTD--S-FIITAG-EDCTCRV 332 (821)
Q Consensus 259 I~~l~~s~~~~~l~s~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~h~~~i~~v~~~~--~-~l~s~~-~dg~i~i 332 (821)
..++.|+|++++++++ ..++.|.++|+.+++. ...+. . ....|.++--.+ +++ . ..++.. .+++|.+
T Consensus 344 ~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl-----~~~i~-vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsv 416 (567)
T 1qks_A 344 LHDGGLDGSHRYFITAANARNKLVVIDTKEGKL-----VAIED-TGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVAL 416 (567)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE-----EEEEE-CSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEE
T ss_pred ccCceECCCCCEEEEEeCCCCeEEEEECCCCcE-----EEEEe-ccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEE
Confidence 7789999999987554 4678999999998765 32210 0 012243221112 332 3 334443 4689999
Q ss_pred EcCC--------CceeeEeecccCCCeEEEEEecCCCEEEEEeC-------CCcEEEEEcCC
Q 003423 333 WGSD--------GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF-------DSAIKVHQFQA 379 (821)
Q Consensus 333 wd~~--------~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~-------dg~I~iwd~~~ 379 (821)
+|.+ .+.++++..... +-..+..+|+++++.+... ..+|.++|+.+
T Consensus 417 id~~~~~~~~~~~kvv~~i~~~g~-g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~ 477 (567)
T 1qks_A 417 IGTDPEGHPDNAWKILDSFPALGG-GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKA 477 (567)
T ss_dssp EECCTTTCTTTBTSEEEEEECSCS-CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGG
T ss_pred ecCCCCCCccccCEEEEEEecCCC-CCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCc
Confidence 9983 456777775533 2345678999999988763 35899999854
No 185
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.32 E-value=5.2e-10 Score=116.55 Aligned_cols=202 Identities=10% Similarity=-0.019 Sum_probs=134.9
Q ss_pred eeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeC--
Q 003423 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY-- 202 (821)
Q Consensus 125 ~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d-- 202 (821)
...+..+...+.+++|+| ++++++++..++.|.+||..+++.......+ ...+.++.+ ++++.++++...+
T Consensus 37 ~~~~~~~~~~~~~~~~~~---~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~i~~---~~dg~l~v~~~~~~~ 109 (333)
T 2dg1_A 37 WLEISKKGLQLEGLNFDR---QGQLFLLDVFEGNIFKINPETKEIKRPFVSH-KANPAAIKI---HKDGRLFVCYLGDFK 109 (333)
T ss_dssp EEEEESSCCCEEEEEECT---TSCEEEEETTTCEEEEECTTTCCEEEEEECS-SSSEEEEEE---CTTSCEEEEECTTSS
T ss_pred eEEEeccCccccCcEECC---CCCEEEEECCCCEEEEEeCCCCcEEEEeeCC-CCCcceEEE---CCCCcEEEEeCCCCC
Confidence 445566777889999998 9998888888899999999887754433222 233556665 5678777776655
Q ss_pred --CEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEe--cCCCcEEEEEEcCCCCEEEEEeC--
Q 003423 203 --NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV--GHEGSIFRIEWSSCGSKLVSVSD-- 276 (821)
Q Consensus 203 --g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~I~~l~~s~~~~~l~s~s~-- 276 (821)
+.|.+||..+ ......+. .+...+.+++++|+|+++++...
T Consensus 110 ~~~~i~~~d~~~---------------------------------~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 156 (333)
T 2dg1_A 110 STGGIFAATENG---------------------------------DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY 156 (333)
T ss_dssp SCCEEEEECTTS---------------------------------CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCB
T ss_pred CCceEEEEeCCC---------------------------------CEEEEEEccCccCCcccceEECCCCCEEEEecccc
Confidence 6899999871 11111111 24467999999999998887654
Q ss_pred ----CCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC--CEE-EEEeCCCeEEEEcC--CCceeeEe----
Q 003423 277 ----DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFI-ITAGEDCTCRVWGS--DGKQLKMI---- 343 (821)
Q Consensus 277 ----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~~l-~s~~~dg~i~iwd~--~~~~~~~~---- 343 (821)
.+.|..+|..+++. ..+..+...+..++|++ +.+ ++...++.|.+|+. +++....+
T Consensus 157 ~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~ 225 (333)
T 2dg1_A 157 STNPLGGVYYVSPDFRTV-----------TPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI 225 (333)
T ss_dssp TTBCCEEEEEECTTSCCE-----------EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEE
T ss_pred ccCCCceEEEEeCCCCEE-----------EEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceE
Confidence 24455555443332 12223334577889983 445 45556889999998 44433221
Q ss_pred ----ecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 344 ----KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 344 ----~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
.++ . .+..++++++|++.++...++.|.+||.++
T Consensus 226 ~~~~~~~-~-~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g 263 (333)
T 2dg1_A 226 PYYFTGH-E-GPDSCCIDSDDNLYVAMYGQGRVLVFNKRG 263 (333)
T ss_dssp EEECCSS-S-EEEEEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred EEecCCC-C-CCCceEECCCCCEEEEEcCCCEEEEECCCC
Confidence 112 2 478899999999888887889999998854
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.28 E-value=8e-10 Score=112.89 Aligned_cols=234 Identities=11% Similarity=-0.039 Sum_probs=152.4
Q ss_pred cEEeEEeccccCCCCCCccceeeEEEE-EcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCC
Q 003423 67 RLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (821)
Q Consensus 67 ~i~~i~~~~~~~~~~~~~~~~~~~l~~-~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~ 145 (821)
...++.|++++ ..++++ ..++.|..|+... . ...+..+...+.+++++|
T Consensus 29 ~~eg~~~d~~g----------~~l~~~~~~~~~i~~~~~~~----------------~-~~~~~~~~~~~~~l~~~~--- 78 (296)
T 3e5z_A 29 WTEGPVYVPAR----------SAVIFSDVRQNRTWAWSDDG----------------Q-LSPEMHPSHHQNGHCLNK--- 78 (296)
T ss_dssp SEEEEEEEGGG----------TEEEEEEGGGTEEEEEETTS----------------C-EEEEESSCSSEEEEEECT---
T ss_pred cccCCeEeCCC----------CEEEEEeCCCCEEEEEECCC----------------C-eEEEECCCCCcceeeECC---
Confidence 46778888663 223433 3568888888652 1 334445667899999999
Q ss_pred CCCEEEEEECCCcEEEEEccCCceeEEEccCcc---eeEEEEeeccCCccCeEEEE----Eee-------------CCEE
Q 003423 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPER---CLLYSMKLWGDNLEALRIAS----GTI-------------YNEI 205 (821)
Q Consensus 146 ~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~s~~~~~~s~~~~~l~s----g~~-------------dg~i 205 (821)
+|+++++...++.|.+||..+++.......... .....+.+ ++++.++++ |+. .+.|
T Consensus 79 dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~---d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l 155 (296)
T 3e5z_A 79 QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCL---APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWV 155 (296)
T ss_dssp TCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEE---CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEE
T ss_pred CCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEE---CCCCCEEEECCccccccccccccccccCCCcEE
Confidence 999877776678999999988775433221111 11223333 467887776 331 2334
Q ss_pred EEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 003423 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEV 285 (821)
Q Consensus 206 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~ 285 (821)
..++.. ..+..+..+.....+++|+|+++.|++.+.++.|.+|++
T Consensus 156 ~~~~~~-----------------------------------g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~ 200 (296)
T 3e5z_A 156 FRLAPD-----------------------------------GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCL 200 (296)
T ss_dssp EEECTT-----------------------------------SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEE
T ss_pred EEECCC-----------------------------------CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEE
Confidence 444332 122334466777899999999998888888899999999
Q ss_pred ccCcccCCCCc-eeeeceEEeccceeEEEEEEc-CCEEEEEeCCCeEEEEcCCCceeeEeecccCCCeEEEEE-ecCCCE
Q 003423 286 RAEYWKDSDSI-EEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLY-DSLSSL 362 (821)
Q Consensus 286 ~~~~~~~~~~~-~~~~~~~~~~h~~~i~~v~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~-~~~~~~ 362 (821)
..... . ... ..+..+...+.++++. +..++.+. ++.|.+|+.+++.+..+..+.. +.+++| .|+++.
T Consensus 201 ~~~g~-----~~~~~--~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~g~~~~~~~~~~~--~~~~~f~~~d~~~ 270 (296)
T 3e5z_A 201 NARGE-----TEYQG--VHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPDGDELGRVLTPQT--TSNLCFGGPEGRT 270 (296)
T ss_dssp CSSSC-----EEEEE--EEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTTSCEEEEEECSSC--CCEEEEESTTSCE
T ss_pred CCCCc-----CcCCC--eEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCCCCEEEEEECCCC--ceeEEEECCCCCE
Confidence 73221 1 111 1223344556778887 33444444 8899999999988888887765 788999 588888
Q ss_pred EEEEeCCCcEEEEEcCC
Q 003423 363 LVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 363 l~tg~~dg~I~iwd~~~ 379 (821)
|++++.++ +..+++..
T Consensus 271 L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 271 LYMTVSTE-FWSIETNV 286 (296)
T ss_dssp EEEEETTE-EEEEECSC
T ss_pred EEEEcCCe-EEEEEccc
Confidence 98888764 44445544
No 187
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.27 E-value=1e-08 Score=113.36 Aligned_cols=334 Identities=9% Similarity=-0.058 Sum_probs=191.7
Q ss_pred CCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCc
Q 003423 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (821)
Q Consensus 146 ~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~ 225 (821)
.+.++++...++.|.++|..+++.+.++..... ...+.+ ++|+.++++++.++.|.+||+..
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~--p~~v~~---SpDGr~lyv~~~dg~V~viD~~~------------- 227 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA--VHISRL---SASGRYLFVIGRDGKVNMIDLWM------------- 227 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECSSC--EEEEEE---CTTSCEEEEEETTSEEEEEETTS-------------
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCCCC--ccceEE---CCCCCEEEEEcCCCeEEEEECCC-------------
Confidence 445666777889999999999999888875543 234444 68999999999999999999830
Q ss_pred ccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEc----CCCCEEEEEeC-CCeEEEEecccCcccCCCCceeee
Q 003423 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS----SCGSKLVSVSD-DRSARIWEVRAEYWKDSDSIEEVG 300 (821)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s----~~~~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~~ 300 (821)
.+.+.+.++.... ....++|+ |||+++++++. +++|.++|..+.+. ++.+.
T Consensus 228 ------------------~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~-----~~~i~ 283 (567)
T 1qks_A 228 ------------------KEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-----KKIQS 283 (567)
T ss_dssp ------------------SSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-----EEEEE
T ss_pred ------------------CCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE-----EEEEe
Confidence 0234455555433 35789999 69998766554 59999999888665 43221
Q ss_pred ceEE-----eccce-eEEEEEEc---CCEEEEEeCCCeEEEEcCC-CceeeEeecccCCCeEEEEEecCCCEEEEEe-CC
Q 003423 301 SSVL-----YGHNA-RVWDCCLT---DSFIITAGEDCTCRVWGSD-GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG-FD 369 (821)
Q Consensus 301 ~~~~-----~~h~~-~i~~v~~~---~~~l~s~~~dg~i~iwd~~-~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~-~d 369 (821)
.... ..|.. ++..+..+ +.++++..++|.|.++|.. .+.+.......++....+.|+|++++++++. .+
T Consensus 284 ~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~s 363 (567)
T 1qks_A 284 TRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANAR 363 (567)
T ss_dssp CCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGG
T ss_pred ccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCC
Confidence 1000 01222 56777776 3567777888999999983 3222221112233577889999999887665 67
Q ss_pred CcEEEEEcCCcCCCcccCCccccccCCCcceEEeec-CCcccceeccCCCCcceEEEEeecC-CeEEEEec--CCcEEEE
Q 003423 370 SAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKI-PNFSEQIRLTDSKSEYVRCLHLTSE-DTLYIATN--HGYLYHT 445 (821)
Q Consensus 370 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~f~~~-~~~l~~~~--~g~~~~~ 445 (821)
+.|.++|..+..+.. .+.. .. ..|...-..+ +.|+ +.++++.. ++.+..+
T Consensus 364 n~V~ViD~~t~kl~~-----------------~i~vgg~--------~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvi 417 (567)
T 1qks_A 364 NKLVVIDTKEGKLVA-----------------IEDTGGQ--------TPHPGRGANF-VHPTFGPVWATSHMGDDSVALI 417 (567)
T ss_dssp TEEEEEETTTTEEEE-----------------EEECSSS--------SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEE
T ss_pred CeEEEEECCCCcEEE-----------------EEeccCc--------CCCCccceee-ECCCCCcEEEeCCCCCCeEEEe
Confidence 899999996421100 0110 00 0111111112 5676 45555543 3455444
Q ss_pred EecCCC--cceeeEeeeccCCc-ceEEEeccCCCCCCCCCCCcEEEEecC-------CccEEEEEecCCCC--CCcceeE
Q 003423 446 KLCDMD--SVNWNKILQVSEGM-PIICMDLLSNEPKYPCGIDDWVALGDG-------KGNMTIVRVVGDVH--TPQLSFT 513 (821)
Q Consensus 446 ~i~~~~--~~~~~~~~~~~~~~-~i~~~~~~~~~~~~s~~~~~~l~~g~~-------~g~i~i~~~~~~~~--~~~~~~~ 513 (821)
...... ...|+.+....... ....+. ..|+++++.+... .+.|.++|+.+... .......
T Consensus 418 d~~~~~~~~~~~kvv~~i~~~g~g~~~i~--------~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~ 489 (567)
T 1qks_A 418 GTDPEGHPDNAWKILDSFPALGGGSLFIK--------THPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKT 489 (567)
T ss_dssp ECCTTTCTTTBTSEEEEEECSCSCCCCEE--------CCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEE
T ss_pred cCCCCCCccccCEEEEEEecCCCCCEEEE--------eCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEE
Confidence 332211 11243333222111 101111 1356677777553 45999999876511 0111001
Q ss_pred E---eeccCccceeeeeEEeecCCCeEEEEEC-----CCCcEEEeeecCC
Q 003423 514 F---TWSAGIERQLLGTYWCKSLGHRFIFTAD-----PKGRLKLWQLCDP 555 (821)
Q Consensus 514 ~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~ 555 (821)
+ .|..-.+.........++++|+.+..+. .++.|.++|..+.
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 490 LPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp ECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred eccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence 1 1111111112334456788888766552 3688999998876
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.25 E-value=1.4e-09 Score=111.04 Aligned_cols=199 Identities=11% Similarity=0.000 Sum_probs=133.2
Q ss_pred eeeccCCCCcEEEEEEeecCCCCC-EEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCC
Q 003423 125 VQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (821)
Q Consensus 125 ~~~~~~h~~~I~~~~~~~~~~~~~-~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg 203 (821)
+..+..+.....+++|+| +++ +++++..++.|..||..++ ...+..+.. ....+.+ ++++.++++...++
T Consensus 20 ~~~l~~~~~~~eg~~~d~---~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~-~~~~l~~---~~dg~l~v~~~~~~ 90 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVP---ARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSH-HQNGHCL---NKQGHLIACSHGLR 90 (296)
T ss_dssp CEEEECCCSSEEEEEEEG---GGTEEEEEEGGGTEEEEEETTSC--EEEEESSCS-SEEEEEE---CTTCCEEEEETTTT
T ss_pred EEEEecCCccccCCeEeC---CCCEEEEEeCCCCEEEEEECCCC--eEEEECCCC-CcceeeE---CCCCcEEEEecCCC
Confidence 344445667788999999 888 7788888999999999877 444443332 3455655 57888887777778
Q ss_pred EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEec----CCCcEEEEEEcCCCCEEEEEeC---
Q 003423 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG----HEGSIFRIEWSSCGSKLVSVSD--- 276 (821)
Q Consensus 204 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~I~~l~~s~~~~~l~s~s~--- 276 (821)
.|.+||.. +++....... ....+..++++|+|+++++.+.
T Consensus 91 ~i~~~d~~---------------------------------~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~ 137 (296)
T 3e5z_A 91 RLERQREP---------------------------------GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGI 137 (296)
T ss_dssp EEEEECST---------------------------------TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHH
T ss_pred eEEEEcCC---------------------------------CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccc
Confidence 99999985 1111111111 1235678999999998887431
Q ss_pred --------------CCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcCC--Cc
Q 003423 277 --------------DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSD--GK 338 (821)
Q Consensus 277 --------------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~--~~ 338 (821)
.+.|..++.. ++. ..+..+......++|+ ++.+++...++.|.+|+++ ++
T Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~~-g~~-----------~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~ 205 (296)
T 3e5z_A 138 DKPEEGYGGEMELPGRWVFRLAPD-GTL-----------SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGE 205 (296)
T ss_dssp HCGGGSSCCCCCSSSCEEEEECTT-SCE-----------EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSC
T ss_pred ccccccccccccCCCcEEEEECCC-CCE-----------EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCc
Confidence 2344444443 322 2444556667889998 4567777788999999983 44
Q ss_pred e---eeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCc
Q 003423 339 Q---LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (821)
Q Consensus 339 ~---~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~ 380 (821)
. ...+..+.+ .+..++++++|++.++. ++.|.+|+.++.
T Consensus 206 ~~~~~~~~~~~~~-~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~ 247 (296)
T 3e5z_A 206 TEYQGVHFTVEPG-KTDGLRVDAGGLIWASA--GDGVHVLTPDGD 247 (296)
T ss_dssp EEEEEEEECCSSS-CCCSEEEBTTSCEEEEE--TTEEEEECTTSC
T ss_pred CcCCCeEeeCCCC-CCCeEEECCCCCEEEEc--CCeEEEECCCCC
Confidence 4 233322333 46789999999866665 788999998643
No 189
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.24 E-value=1.7e-09 Score=108.50 Aligned_cols=209 Identities=9% Similarity=0.057 Sum_probs=148.6
Q ss_pred eEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCC-CcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCC
Q 003423 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS-HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (821)
Q Consensus 89 ~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~ 167 (821)
.+++..+++.|.+||.+++ +.+.++..+. ..+.++.++| +|++|+ +.++.|..||. ++
T Consensus 7 ~lv~~~~~~~v~~~d~~tG---------------~~~w~~~~~~~~~~~~~~~~p---dG~ilv--s~~~~V~~~d~-~G 65 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTK---------------EIVWEYPLEKGWECNSVAATK---AGEILF--SYSKGAKMITR-DG 65 (276)
T ss_dssp EEEECTTCSEEEEEETTTT---------------EEEEEEECCTTCCCCEEEECT---TSCEEE--ECBSEEEEECT-TS
T ss_pred EEEeeCCCCEEEEEECCCC---------------eEEEEeCCCccCCCcCeEECC---CCCEEE--eCCCCEEEECC-CC
Confidence 3444456899999997543 4566666665 4688999999 999888 34788999998 89
Q ss_pred ceeEEEccCcceeEEEEeeccCCccCeEEEEEee-CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccce
Q 003423 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTI-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (821)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (821)
+.+.++..+....+.++.+ .+++.++++.+. ++.|..++.. +
T Consensus 66 ~~~W~~~~~~~~~~~~~~~---~~dG~~lv~~~~~~~~v~~vd~~----------------------------------G 108 (276)
T 3no2_A 66 RELWNIAAPAGCEMQTARI---LPDGNALVAWCGHPSTILEVNMK----------------------------------G 108 (276)
T ss_dssp CEEEEEECCTTCEEEEEEE---CTTSCEEEEEESTTEEEEEECTT----------------------------------S
T ss_pred CEEEEEcCCCCccccccEE---CCCCCEEEEecCCCCEEEEEeCC----------------------------------C
Confidence 9988888765445666655 578899988876 6777777654 1
Q ss_pred eeEEEEe------cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--C
Q 003423 247 VNLFRLV------GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--D 318 (821)
Q Consensus 247 ~~~~~~~------~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~ 318 (821)
+.+..+. ++......+++.++|+++++...++.|..||.. ++. . ..+.. ...+.++... +
T Consensus 109 k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~-----~-----w~~~~-~~~~~~~~~~~~g 176 (276)
T 3no2_A 109 EVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL-----L-----NSVKL-SGTPFSSAFLDNG 176 (276)
T ss_dssp CEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE-----E-----EEEEC-SSCCCEEEECTTS
T ss_pred CEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE-----E-----EEEEC-CCCccceeEcCCC
Confidence 1122221 222345566789999999999999999999988 654 2 22222 2334455555 5
Q ss_pred CEEEEEeCCCeEEEEcCC-CceeeEeecccC-----CCeEEEEEecCCCEEEEEe
Q 003423 319 SFIITAGEDCTCRVWGSD-GKQLKMIKEHIG-----RGIWRCLYDSLSSLLVTAG 367 (821)
Q Consensus 319 ~~l~s~~~dg~i~iwd~~-~~~~~~~~~h~~-----~~i~~l~~~~~~~~l~tg~ 367 (821)
+.++++..++.|..+|.+ |+.+.++..+.. ..+..++..++|+++++..
T Consensus 177 ~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 177 DCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 788888888899999995 999888875421 1267888899999888874
No 190
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.24 E-value=1.9e-08 Score=102.70 Aligned_cols=273 Identities=9% Similarity=-0.014 Sum_probs=172.3
Q ss_pred eeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEee-ccccEEeEEeccccCCCCCCccceeeEEEEEc
Q 003423 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (821)
Q Consensus 18 ~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~-~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g 95 (821)
..+.++++. ++ +.+.++.. ++.|.+||.. ++... +... ....++++.+.+++ ..+++..+
T Consensus 20 ~~p~~i~~d--~~----g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g----------~l~v~~~~ 81 (300)
T 2qc5_A 20 SGPYGITSS--ED----GKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLG----------DIWFTENG 81 (300)
T ss_dssp CCEEEEEEC--TT----SCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTS----------CEEEEETT
T ss_pred CCcceeeEC--CC----CCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCC----------CEEEEecC
Confidence 467889998 87 56666654 6899999988 65443 3322 22468888887553 13333334
Q ss_pred CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEcc
Q 003423 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS 175 (821)
Q Consensus 96 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~ 175 (821)
++.|..|+.. +. . ....+......+.++++.+ ++++.++...++.|..+|.. ++.. .+..
T Consensus 82 ~~~v~~~d~~-g~-------------~-~~~~~~~~~~~~~~i~~~~---~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~ 141 (300)
T 2qc5_A 82 ANKIGKLSKK-GG-------------F-TEYPLPQPDSGPYGITEGL---NGDIWFTQLNGDRIGKLTAD-GTIY-EYDL 141 (300)
T ss_dssp TTEEEEECTT-SC-------------E-EEEECSSTTCCEEEEEECS---TTCEEEEETTTTEEEEECTT-SCEE-EEEC
T ss_pred CCeEEEECCC-CC-------------e-EEecCCCCCCCCccceECC---CCCEEEEccCCCeEEEECCC-CCEE-EccC
Confidence 6788888765 22 1 1122333346789999998 88877776667889999987 5443 2221
Q ss_pred C-cceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEec
Q 003423 176 P-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (821)
Q Consensus 176 ~-~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (821)
+ .......+.+ ++++.+.++...++.|..++.. ..........
T Consensus 142 ~~~~~~~~~i~~---d~~g~l~v~~~~~~~i~~~~~~---------------------------------g~~~~~~~~~ 185 (300)
T 2qc5_A 142 PNKGSYPAFITL---GSDNALWFTENQNNSIGRITNT---------------------------------GKLEEYPLPT 185 (300)
T ss_dssp SSTTCCEEEEEE---CTTSSEEEEETTTTEEEEECTT---------------------------------CCEEEEECSS
T ss_pred CCCCCCceeEEE---CCCCCEEEEecCCCeEEEECCC---------------------------------CcEEEeeCCC
Confidence 1 2233455555 4567766666567889888875 1111122234
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEE
Q 003423 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRV 332 (821)
Q Consensus 255 h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~i 332 (821)
+...+.++++.+++++.++....+.|.+||. ++.. .. .....+...+.++++. +...++...++.|..
T Consensus 186 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~------~~---~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 255 (300)
T 2qc5_A 186 NAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEI------SE---YDIPTPNARPHAITAGKNSEIWFTEWGANQIGR 255 (300)
T ss_dssp TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE------EE---EECSSTTCCEEEEEECSTTCEEEEETTTTEEEE
T ss_pred CCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcE------EE---EECCCCCCCceEEEECCCCCEEEeccCCCeEEE
Confidence 4567899999999988887777788999998 3332 11 1222345667889987 355555556789999
Q ss_pred EcCCCceeeE-eecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 333 WGSDGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 333 wd~~~~~~~~-~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
++.+++.... +..... .+.+++++++|++.++.. . .|..++.
T Consensus 256 ~~~~g~~~~~~~~~~~~-~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 256 ITNDNTIQEYQLQTENA-EPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp ECTTSCEEEEECCSTTC-CCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred ECCCCcEEEEECCccCC-ccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 9996654322 222223 478899999988655554 4 6766665
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.22 E-value=3.4e-09 Score=106.29 Aligned_cols=224 Identities=12% Similarity=0.075 Sum_probs=152.3
Q ss_pred CCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCc
Q 003423 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (821)
Q Consensus 146 ~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~ 225 (821)
.+++|++++.|+.|.+||.++++.+.++..+......++.+ .+++++++ +.++.|..||..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~---~pdG~ilv--s~~~~V~~~d~~-------------- 64 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAA---TKAGEILF--SYSKGAKMITRD-------------- 64 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEE---CTTSCEEE--ECBSEEEEECTT--------------
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEE---CCCCCEEE--eCCCCEEEECCC--------------
Confidence 56789999999999999999999998887654212233333 47888888 347888888875
Q ss_pred ccCCCCCCcceeeecccccceeeEEEEecC-CCcEEEEEEcCCCCEEEEEeC-CCeEEEEecccCcccCCCCceeeece-
Q 003423 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGH-EGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRAEYWKDSDSIEEVGSS- 302 (821)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~I~~l~~s~~~~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~- 302 (821)
++.+.++..+ ...+.++.+.++|+++++.+. ++.|..+|. +++. +......
T Consensus 65 --------------------G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~-----l~~~~~~~ 118 (276)
T 3no2_A 65 --------------------GRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEV-----LSKTEFET 118 (276)
T ss_dssp --------------------SCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCE-----EEEEEECC
T ss_pred --------------------CCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCE-----EEEEeccC
Confidence 2344555544 357889999999999999887 777777775 3433 2211100
Q ss_pred EEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-C
Q 003423 303 VLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ-A 379 (821)
Q Consensus 303 ~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~-~ 379 (821)
...++......+++. ++++++...++.|..||.+|+.+.++..... ..++...++++.+++++.++.|..+|.+ +
T Consensus 119 ~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~~~--~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG 196 (276)
T 3no2_A 119 GIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLSGT--PFSSAFLDNGDCLVACGDAHCFVQLNLESN 196 (276)
T ss_dssp SCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEEEECSSC--CCEEEECTTSCEEEECBTTSEEEEECTTTC
T ss_pred CCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEEEECCCC--ccceeEcCCCCEEEEeCCCCeEEEEeCcCC
Confidence 001122233344454 6899999999999999999999998887533 5677888999999999888899999986 4
Q ss_pred cCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCC
Q 003423 380 FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG 440 (821)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g 440 (821)
+.+.++.. ..... ..-..+..++..++|.++++..+|
T Consensus 197 ~~~w~~~~------------------~~~~~------~~l~~~~~~~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 197 RIVRRVNA------------------NDIEG------VQLFFVAQLFPLQNGGLYICNWQG 233 (276)
T ss_dssp CEEEEEEG------------------GGSBS------CCCSEEEEEEECTTSCEEEEEECT
T ss_pred cEEEEecC------------------CCCCC------ccccccccceEcCCCCEEEEeccC
Confidence 33222211 00000 011337788888899888887543
No 192
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.18 E-value=6.5e-08 Score=98.65 Aligned_cols=271 Identities=10% Similarity=-0.046 Sum_probs=171.5
Q ss_pred ccEEeEEeccccCCCCCCccceeeEEEEE-cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecC
Q 003423 66 IRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (821)
Q Consensus 66 ~~i~~i~~~~~~~~~~~~~~~~~~~l~~~-g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~ 144 (821)
..++++.+.+++ .+.++. +++.|.+|+.. +. ... ..+......+.++++.+
T Consensus 20 ~~p~~i~~d~~g-----------~l~v~~~~~~~v~~~~~~-~~-------------~~~-~~~~~~~~~~~~i~~~~-- 71 (300)
T 2qc5_A 20 SGPYGITSSEDG-----------KVWFTQHKANKISSLDQS-GR-------------IKE-FEVPTPDAKVMCLIVSS-- 71 (300)
T ss_dssp CCEEEEEECTTS-----------CEEEEETTTTEEEEECTT-SC-------------EEE-EECSSTTCCEEEEEECT--
T ss_pred CCcceeeECCCC-----------CEEEEcCCCCeEEEECCC-Cc-------------eEE-EECCCCCCcceeEEECC--
Confidence 367888887553 244443 57889998865 32 111 22334446789999998
Q ss_pred CCCCEEEEEECCCcEEEEEccCCceeEEEccC-cceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCC
Q 003423 145 NGNRSLAIGCSDNSIRVWDISNSSIILEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPE 223 (821)
Q Consensus 145 ~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~ 223 (821)
++++.++...++.|..+|.. ++.. .+..+ .......+.+ ++++.+.++...++.|..++..
T Consensus 72 -~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~---~~~g~l~v~~~~~~~i~~~~~~------------ 133 (300)
T 2qc5_A 72 -LGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITE---GLNGDIWFTQLNGDRIGKLTAD------------ 133 (300)
T ss_dssp -TSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEE---CSTTCEEEEETTTTEEEEECTT------------
T ss_pred -CCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceE---CCCCCEEEEccCCCeEEEECCC------------
Confidence 88877766667889999987 5542 33222 2234556665 4577777776667889888865
Q ss_pred CcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceE
Q 003423 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV 303 (821)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 303 (821)
.......+......+.++++.+++++.++...++.|..+|. +++. .. ..
T Consensus 134 ---------------------g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~------~~---~~ 182 (300)
T 2qc5_A 134 ---------------------GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKL------EE---YP 182 (300)
T ss_dssp ---------------------SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE------EE---EE
T ss_pred ---------------------CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcE------EE---ee
Confidence 11111122334567899999999997777777889999998 4432 11 12
Q ss_pred EeccceeEEEEEEc--CCEEEEEeCCCeEEEEcCCCceeeE-eecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCc
Q 003423 304 LYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (821)
Q Consensus 304 ~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~~~~~~~-~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~ 380 (821)
...+...+.++++. +...++....+.|.+|+.+++.... +..+.. .+.++++++++++.++...++.|..++.++.
T Consensus 183 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~ 261 (300)
T 2qc5_A 183 LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNA-RPHAITAGKNSEIWFTEWGANQIGRITNDNT 261 (300)
T ss_dssp CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTC-CEEEEEECSTTCEEEEETTTTEEEEECTTSC
T ss_pred CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCC-CceEEEECCCCCEEEeccCCCeEEEECCCCc
Confidence 22344567888887 3455555556789999996654433 222233 5889999999987666666788999987431
Q ss_pred CCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEE
Q 003423 381 LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYH 444 (821)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~ 444 (821)
+.....+ .....+.++++.++|.+++++.+ .+..
T Consensus 262 -------------------~~~~~~~----------~~~~~~~~i~~~~~g~l~v~~~~-~i~~ 295 (300)
T 2qc5_A 262 -------------------IQEYQLQ----------TENAEPHGITFGKDGSVWFALKC-KIGK 295 (300)
T ss_dssp -------------------EEEEECC----------STTCCCCCEEECTTSCEEEECSS-EEEE
T ss_pred -------------------EEEEECC----------ccCCccceeEeCCCCCEEEEccC-ceEE
Confidence 0011111 11233678889999998888763 5543
No 193
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.18 E-value=3.2e-09 Score=106.69 Aligned_cols=236 Identities=6% Similarity=-0.074 Sum_probs=151.8
Q ss_pred cEEeEEeccccCCCCCCccceeeEEE-E-EcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecC
Q 003423 67 RLHGISCNFINCTEGSVSTRVTFEVA-L-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (821)
Q Consensus 67 ~i~~i~~~~~~~~~~~~~~~~~~~l~-~-~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~ 144 (821)
...++.+++++ .+++ + .+++.|.+|+..... .......+...+.++++.+
T Consensus 25 ~p~~i~~~~~g-----------~l~v~~~~~~~~i~~~~~~~~~---------------~~~~~~~~~~~p~~i~~~~-- 76 (270)
T 1rwi_B 25 SPSGVAVDSAG-----------NVYVTSEGMYGRVVKLATGSTG---------------TTVLPFNGLYQPQGLAVDG-- 76 (270)
T ss_dssp CEEEEEECTTC-----------CEEEEECSSSCEEEEECC--------------------EECCCCSCCSCCCEEECT--
T ss_pred CccceEECCCC-----------CEEEEccCCCCcEEEecCCCcc---------------cceEeeCCcCCcceeEECC--
Confidence 56778887553 2444 3 456888888764321 1111122334678899998
Q ss_pred CCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCC
Q 003423 145 NGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (821)
Q Consensus 145 ~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~ 224 (821)
+++++++.. ++.|.+||...... ..+..........+.+ ++++.+.++...++.|.+|+..
T Consensus 77 -~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~---~~~g~l~v~~~~~~~i~~~~~~------------- 137 (270)
T 1rwi_B 77 -AGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAV---DTQGAVYVADRGNNRVVKLAAG------------- 137 (270)
T ss_dssp -TCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEE---CTTCCEEEEEGGGTEEEEECTT-------------
T ss_pred -CCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEE---CCCCCEEEEECCCCEEEEEECC-------------
Confidence 888665554 88999999876543 2232222223455655 4577777777778999999754
Q ss_pred cccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEE
Q 003423 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (821)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 304 (821)
..........+...+.+++++++|+++++...++.|.+||...... . ...
T Consensus 138 --------------------~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~-----~-----~~~ 187 (270)
T 1rwi_B 138 --------------------SKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ-----V-----VLP 187 (270)
T ss_dssp --------------------CCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE-----E-----ECC
T ss_pred --------------------CceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce-----E-----eec
Confidence 1111111122334578899999999888887789999999876543 1 111
Q ss_pred eccceeEEEEEEc--CCEEEEEeCCCeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 305 YGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 305 ~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
..+...+.++++. +..+++...++.|.+|+.++.............+.+++++++|+++++...++.|+++++..
T Consensus 188 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 188 FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence 2233567889997 34555556688999999966554443322212589999999999888888999999999854
No 194
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.17 E-value=7.6e-09 Score=119.74 Aligned_cols=241 Identities=8% Similarity=0.002 Sum_probs=152.7
Q ss_pred eeeEEEEEeccCCCCCCcceEEeec--CC----eEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEE
Q 003423 18 GEISALCFVHLPSHLSSLPFLLAGS--GS----QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (821)
Q Consensus 18 ~~Vt~l~~~~~p~~~~~~~~l~~g~--~~----~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l 91 (821)
..+..++|| || +++|+.+. +| .|++||+.+|+.+.... ....+.++.|+|++ + .++
T Consensus 125 ~~~~~~~~S--PD----g~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~--~~~~~~~~~wspDg-------~---~l~ 186 (710)
T 2xdw_A 125 VALRGYAFS--ED----GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL--ERVKFSCMAWTHDG-------K---GMF 186 (710)
T ss_dssp EEEEEEEEC--TT----SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE--EEECSCCEEECTTS-------S---EEE
T ss_pred EEEEEEEEC--CC----CCEEEEEEcCCCCceEEEEEEECCCCCCCcccc--cCcccceEEEEeCC-------C---EEE
Confidence 368899999 99 56666543 22 89999999999875322 12236678898663 2 444
Q ss_pred EEEcCCe----------------EEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEEC
Q 003423 92 ALFGEKR----------------VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS 155 (821)
Q Consensus 92 ~~~g~~~----------------v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~ 155 (821)
.+..++. |.+|++..+.. .-..+.....|...+..+.|+| +|++|+.++.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~-----------~~~~v~~~~~~~~~~~~~~~Sp---Dg~~l~~~~~ 252 (710)
T 2xdw_A 187 YNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS-----------EDILCAEFPDEPKWMGGAELSD---DGRYVLLSIR 252 (710)
T ss_dssp EEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG-----------GCEEEECCTTCTTCEEEEEECT---TSCEEEEEEE
T ss_pred EEEECCccccccccccccCCCCEEEEEECCCCcc-----------cceEEeccCCCCeEEEEEEEcC---CCCEEEEEEE
Confidence 4544433 88888764320 0123334445677889999999 9999988765
Q ss_pred -----CCcEEEEEccC------Cc-eeEEEccCcceeEEEEeeccCCccCeEEEEEee----CCEEEEEEcccCCcccCC
Q 003423 156 -----DNSIRVWDISN------SS-IILEVHSPERCLLYSMKLWGDNLEALRIASGTI----YNEIIVWKVDWEHVAPLL 219 (821)
Q Consensus 156 -----d~~i~iwd~~~------~~-~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~----dg~i~vwd~~~~~~~~~~ 219 (821)
++.|.+||+.+ +. ....+..+.....+. + ++++..|+..+. .+.|.+||+.+.
T Consensus 253 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~--~---s~dg~~l~~~s~~~~~~~~l~~~d~~~~------ 321 (710)
T 2xdw_A 253 EGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDY--V---TNEGTVFTFKTNRHSPNYRLINIDFTDP------ 321 (710)
T ss_dssp CSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE--E---EEETTEEEEEECTTCTTCEEEEEETTSC------
T ss_pred ccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEE--E---eccCCEEEEEECCCCCCCEEEEEeCCCC------
Confidence 67899999986 43 355555544433322 2 356666655443 346999998711
Q ss_pred CCCCCcccCCCCCCcceeeecccccceeeEEEEecCCC--cEEEEEEcCCCCEEEEEeCCCeEE--EEecccCcccCCCC
Q 003423 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG--SIFRIEWSSCGSKLVSVSDDRSAR--IWEVRAEYWKDSDS 295 (821)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~I~~l~~s~~~~~l~s~s~Dg~i~--iwd~~~~~~~~~~~ 295 (821)
.......+..|.. .+..++|++++.++++...|+..+ +|++.+++.
T Consensus 322 -------------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~----- 371 (710)
T 2xdw_A 322 -------------------------EESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGAL----- 371 (710)
T ss_dssp -------------------------CGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCE-----
T ss_pred -------------------------CcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCE-----
Confidence 0011233445544 688899998888889999998655 556545432
Q ss_pred ceeeeceEEeccceeEEEEEEc--CCEEE-EEe---CCCeEEEEcCC
Q 003423 296 IEEVGSSVLYGHNARVWDCCLT--DSFII-TAG---EDCTCRVWGSD 336 (821)
Q Consensus 296 ~~~~~~~~~~~h~~~i~~v~~~--~~~l~-s~~---~dg~i~iwd~~ 336 (821)
. ..+..+...+..+.++ ++.++ +.+ ..+++..||+.
T Consensus 372 ~-----~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 413 (710)
T 2xdw_A 372 L-----KIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413 (710)
T ss_dssp E-----EEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred E-----EecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence 2 3455567778888887 33444 333 34789999984
No 195
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.15 E-value=1.1e-05 Score=94.45 Aligned_cols=464 Identities=10% Similarity=0.027 Sum_probs=241.8
Q ss_pred cceeeccceeeeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEe-------eccccEEeEEeccccCC
Q 003423 7 SEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQV-------FHGIRLHGISCNFINCT 79 (821)
Q Consensus 7 ~~w~~~~~~~~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~-------~~~~~i~~i~~~~~~~~ 79 (821)
+-|..+.+--...|+++.-. ++ .+|..|...=|..||-.+ ...++. .....|.+|...+++
T Consensus 32 ~~~~~~~gLs~n~v~~I~qD--~~-----G~lWigT~~GL~ryDG~~---f~~~~~~~~~~~~l~~n~I~~i~~d~~g-- 99 (795)
T 4a2l_A 32 SYISINEGLSQSTVFSIDQD--KR-----GNMWFATYDGVNKYDGYA---FTVYQHNEDDPNSIANDISRIVKTDSQG-- 99 (795)
T ss_dssp EEESGGGTCSSSCEEEEEEC--TT-----SCEEEEETTEEEEECSSC---EEEECCCTTCTTSCSCSCEEEEEECTTS--
T ss_pred EEccccCCCccceeEEEEEc--CC-----CCEEEeecCcCcccCCCc---eEEEeCCCCCCCcccccceeEEEECCCC--
Confidence 34555555555678998877 65 355555544477888543 233332 123468888766442
Q ss_pred CCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCC-CcEEEEEEeecCCCCCEEEEEECCCc
Q 003423 80 EGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS-HWVFDVCFLKVCNGNRSLAIGCSDNS 158 (821)
Q Consensus 80 ~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~I~~~~~~~~~~~~~~l~t~~~d~~ 158 (821)
.+-+... +-+..||...+. +.......... ..|.++...+ ++.+.+ ++. +.
T Consensus 100 ---------~lWigT~-~Gl~~yd~~~~~-------------f~~~~~~~~~~~~~i~~i~~d~---~g~lwi-~t~-~g 151 (795)
T 4a2l_A 100 ---------RVWIGTR-DGLSRYDEEKDI-------------FQNFFYEKNGKHLQVNGIEEIS---PEQLLI-STP-EG 151 (795)
T ss_dssp ---------CEEEEES-SCEEEEETTTTE-------------EEEECCEETTEECCCCEEEEEE---TTEEEE-EET-TE
T ss_pred ---------CEEEEeC-CchheeCCCCCe-------------EEeccccccCCCceEEEEEECC---CCCEEE-EEC-Cc
Confidence 2444443 457778754321 11111100000 1188888877 776554 444 55
Q ss_pred EEEEEccCCceeEEEccCc-cee-EEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcce
Q 003423 159 IRVWDISNSSIILEVHSPE-RCL-LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKC 236 (821)
Q Consensus 159 i~iwd~~~~~~~~~~~~~~-~~~-~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (821)
|..||..+++.. .+.... ... +.++.. ..++. |..|+.++-|..|+..+.
T Consensus 152 l~~~~~~~~~~~-~~~~~~~~~~~i~~i~~---d~~g~-lwigt~~~Gl~~~~~~~~----------------------- 203 (795)
T 4a2l_A 152 LIMFDIKESKFI-DDSFSTAMHKTIASTLY---RQGDQ-IYIGTSTDGLYTYSITQK----------------------- 203 (795)
T ss_dssp EEEEETTTTEEE-CSSSCHHHHTCCEEEEE---EETTE-EEEEESSSCEEEEETTTC-----------------------
T ss_pred eEEEECCCCEEE-eccCCCCCCcceEEEEE---CCCCC-EEEEECCCCEEEEeCCCC-----------------------
Confidence 888997765432 111110 111 333333 23444 444666556888887611
Q ss_pred eeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceE---EeccceeEEE
Q 003423 237 FKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV---LYGHNARVWD 313 (821)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~h~~~i~~ 313 (821)
...... ...+...|.++...+++.+.+.. .++-+..||..+++. ....... ..-....|.+
T Consensus 204 --------~~~~~~-~~~~~~~i~~i~~d~~g~lwigt-~~~Gl~~~~~~~~~~------~~~~~~~~~~~~l~~~~i~~ 267 (795)
T 4a2l_A 204 --------TFEKVI-PILGTKQIQAILQQSPTRIWVAT-EGAGLFLINPKTKEI------KNYLHSPSNPKSISSNYIRS 267 (795)
T ss_dssp --------CEEECC-----CCCEEEEEEEETTEEEEEE-BSSCEEEEETTTTEE------EEECCCTTCTTSCSCSBEEE
T ss_pred --------eEEEec-CCCCCCeeEEEEEcCCCCEEEEE-CCCCeEEEeCCCCeE------EEeecCCCCccccCCCeEEE
Confidence 111110 01234678888888887766644 444488898876543 1000000 0011356888
Q ss_pred EEEc-CCEEEEEeCCCeEEEEcCCCceeeEeecc-------cCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcc
Q 003423 314 CCLT-DSFIITAGEDCTCRVWGSDGKQLKMIKEH-------IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSL 385 (821)
Q Consensus 314 v~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~h-------~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~ 385 (821)
+... ...|..|..+ -+.+|+........+... ....|.++..+++|. |..|+.++-|..++........+
T Consensus 268 i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~ 345 (795)
T 4a2l_A 268 LAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNI 345 (795)
T ss_dssp EEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEE
T ss_pred EEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEE
Confidence 8887 4566666666 588888854444444311 113599999998876 55677777898888744322111
Q ss_pred cCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeeecc---
Q 003423 386 ESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVS--- 462 (821)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~--- 462 (821)
... +. . .......|.+++..+++.+.+++.++-+..+ +..+..+.......
T Consensus 346 ~~~-----------------~~-~-----~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~---~~~~~~~~~~~~~~~~~ 399 (795)
T 4a2l_A 346 RNI-----------------PY-K-----NSLSDNVVSCIVEDKDKNLWIGTNDGGLNLY---NPITQRFTSYTLQEDES 399 (795)
T ss_dssp CCC-----------------TT-S-----SSCSCSSEEEEEECTTSCEEEEESSSCEEEE---CTTTCCEEEECCC----
T ss_pred cCC-----------------CC-C-----CCCCCCeeEEEEECCCCCEEEEECCCCeEEE---cCCCCcEEEEecCCCCc
Confidence 100 00 0 0011345899999999999999987666643 33333333332111
Q ss_pred ----CCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEee-ccC-ccceeeeeEEeecCCCe
Q 003423 463 ----EGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTW-SAG-IERQLLGTYWCKSLGHR 536 (821)
Q Consensus 463 ----~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~ 536 (821)
....+.++.... ++.++.+|+.++.+..|+..++... .+.. .+. ....+..+ ...+++.
T Consensus 400 ~~~l~~~~v~~i~~d~--------~g~~lWigt~~~Gl~~~d~~~~~~~-----~~~~~~~~l~~~~v~~i--~~d~~g~ 464 (795)
T 4a2l_A 400 ARGIGSNNIKAVYVDE--------KKSLVYIGTHAGGLSILHRNSGQVE-----NFNQRNSQLVNENVYAI--LPDGEGN 464 (795)
T ss_dssp --CCSCSCEEEEEEET--------TTTEEEEEETTTEEEEEETTTCCEE-----EECTTTSCCSCSCEEEE--EECSSSC
T ss_pred ccCCCCccEEEEEEcC--------CCCEEEEEeCcCceeEEeCCCCcEE-----EeecCCCCcCCCeeEEE--EECCCCC
Confidence 123455554432 2343777877777888886654321 1100 000 01112222 2344566
Q ss_pred EEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecC
Q 003423 537 FIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLL 610 (821)
Q Consensus 537 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~ 610 (821)
+.+... +| +.+|+........- .....-..-....|.++...+++++.+... +-|..|+..
T Consensus 465 lwigt~-~G-l~~~~~~~~~~~~~---------~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~ 525 (795)
T 4a2l_A 465 LWLGTL-SA-LVRFNPEQRSFTTI---------EKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQE 525 (795)
T ss_dssp EEEEES-SC-EEEEETTTTEEEEC---------CBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEE
T ss_pred EEEEec-Cc-eeEEeCCCCeEEEc---------cccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCC
Confidence 666554 44 77788655310000 000000011235689998888888776554 458888865
No 196
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.15 E-value=8.8e-09 Score=119.18 Aligned_cols=200 Identities=9% Similarity=0.000 Sum_probs=130.3
Q ss_pred CCCCcEEEEEEeecCCCCCEEEEEECCC-----cEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCE
Q 003423 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDN-----SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE 204 (821)
Q Consensus 130 ~h~~~I~~~~~~~~~~~~~~l~t~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~ 204 (821)
+|...+..++||| ||++||.++.++ .|++||+.+++.+........ ..++.+ ++|+..|+.++.++.
T Consensus 122 ~~~~~~~~~~~SP---Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~--~~~~~w---spDg~~l~~~~~~~~ 193 (710)
T 2xdw_A 122 DGTVALRGYAFSE---DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVK--FSCMAW---THDGKGMFYNAYPQQ 193 (710)
T ss_dssp TSCEEEEEEEECT---TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEEC--SCCEEE---CTTSSEEEEEECCCC
T ss_pred CCCEEEEEEEECC---CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcc--cceEEE---EeCCCEEEEEEECCc
Confidence 3545788999999 999998776543 899999999987653222211 112333 589998988877655
Q ss_pred ----------------EEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCC
Q 003423 205 ----------------IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG 268 (821)
Q Consensus 205 ----------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~ 268 (821)
|++|++.+. ......+.....|...+.++.|+|||
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~l~t~-----------------------------~~~~~~v~~~~~~~~~~~~~~~SpDg 244 (710)
T 2xdw_A 194 DGKSDGTETSTNLHQKLYYHVLGTD-----------------------------QSEDILCAEFPDEPKWMGGAELSDDG 244 (710)
T ss_dssp SSCCSSSCCCCCCCCEEEEEETTSC-----------------------------GGGCEEEECCTTCTTCEEEEEECTTS
T ss_pred cccccccccccCCCCEEEEEECCCC-----------------------------cccceEEeccCCCCeEEEEEEEcCCC
Confidence 888888711 00112333333456678899999999
Q ss_pred CEEEEEeC-----CCeEEEEeccc------CcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCC----CeEE
Q 003423 269 SKLVSVSD-----DRSARIWEVRA------EYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED----CTCR 331 (821)
Q Consensus 269 ~~l~s~s~-----Dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~d----g~i~ 331 (821)
++|+..+. +..|.+||+.+ +.. .. ..+..+...+... |+ ++.|+..+.+ +.|.
T Consensus 245 ~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~----~~-----~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~ 314 (710)
T 2xdw_A 245 RYVLLSIREGCDPVNRLWYCDLQQESNGITGIL----KW-----VKLIDNFEGEYDY-VTNEGTVFTFKTNRHSPNYRLI 314 (710)
T ss_dssp CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC----CC-----EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEE
T ss_pred CEEEEEEEccCCCccEEEEEECcccccccCCcc----ce-----EEeeCCCCcEEEE-EeccCCEEEEEECCCCCCCEEE
Confidence 99887764 67899999986 321 01 3455555544443 33 5666555443 3699
Q ss_pred EEcCCC-c--eeeEeecccC-CCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 003423 332 VWGSDG-K--QLKMIKEHIG-RGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (821)
Q Consensus 332 iwd~~~-~--~~~~~~~h~~-~~i~~l~~~~~~~~l~tg~~dg~I~iwd 376 (821)
+|++++ . ....+..+.. ..+..+++++++.++++...|+..++|-
T Consensus 315 ~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~ 363 (710)
T 2xdw_A 315 NIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQL 363 (710)
T ss_dssp EEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred EEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEE
Confidence 999843 2 2355555543 2477889988788889998898655543
No 197
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.14 E-value=2.8e-09 Score=122.92 Aligned_cols=198 Identities=9% Similarity=-0.003 Sum_probs=131.5
Q ss_pred CCCCcEEEEEEeecCCCCCEEEEE-----ECCCcEEEEEccCCcee-EE-EccCc-ceeEEEEeeccCCccCeEEEEEee
Q 003423 130 RLSHWVFDVCFLKVCNGNRSLAIG-----CSDNSIRVWDISNSSII-LE-VHSPE-RCLLYSMKLWGDNLEALRIASGTI 201 (821)
Q Consensus 130 ~h~~~I~~~~~~~~~~~~~~l~t~-----~~d~~i~iwd~~~~~~~-~~-~~~~~-~~~~~s~~~~~~s~~~~~l~sg~~ 201 (821)
+|...+..++||| ||++||.+ +.+..|++||+.+++.+ .. +.... ..+.| ++|+..|+.++.
T Consensus 118 ~~~~~~~~~~~SP---DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~w-------spDg~~l~~~~~ 187 (695)
T 2bkl_A 118 DGTVSLGTWAVSW---DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKW-------TPDSKGFYYEWL 187 (695)
T ss_dssp SSCEEEEEEEECT---TSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEE-------CTTSSEEEEEEC
T ss_pred CCCEEEEEEEECC---CCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEE-------ecCCCEEEEEEe
Confidence 5666799999999 99999843 34568999999998864 21 11111 22333 589999998887
Q ss_pred CCE-------------EEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCC
Q 003423 202 YNE-------------IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG 268 (821)
Q Consensus 202 dg~-------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~ 268 (821)
+.. |++|++.+.. .....+.....|...+.++.|+|||
T Consensus 188 d~~~~~~~~~~~~~~~v~~~~l~t~~-----------------------------~~~~lv~~~~~~~~~~~~~~~SpDG 238 (695)
T 2bkl_A 188 PTDPSIKVDERPGYTTIRYHTLGTEP-----------------------------SKDTVVHERTGDPTTFLQSDLSRDG 238 (695)
T ss_dssp CCCTTSCGGGGGGGCEEEEEETTSCG-----------------------------GGCEEEECCCCCTTCEEEEEECTTS
T ss_pred cCCCCCccccCCCCCEEEEEECCCCc-----------------------------hhceEEEecCCCCEEEEEEEECCCC
Confidence 665 9999987210 0123444444566789999999999
Q ss_pred CEEEEEeCCC----eEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc-CCEEEEEe---CCCeEEEEcCC-Cce
Q 003423 269 SKLVSVSDDR----SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAG---EDCTCRVWGSD-GKQ 339 (821)
Q Consensus 269 ~~l~s~s~Dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~l~s~~---~dg~i~iwd~~-~~~ 339 (821)
++|+..+.++ .|.+|+..++.. ..+..+...+....+. +.++++.. .++.|.+|+++ ++.
T Consensus 239 ~~l~~~~~~~~~~~~l~~~~~~~~~~-----------~~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~ 307 (695)
T 2bkl_A 239 KYLFVYILRGWSENDVYWKRPGEKDF-----------RLLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPAR 307 (695)
T ss_dssp CCEEEEEEETTTEEEEEEECTTCSSC-----------EEEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSG
T ss_pred CEEEEEEeCCCCceEEEEEcCCCCce-----------EEeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCc
Confidence 9988777666 666666544433 3445555555555555 44333333 35899999994 332
Q ss_pred --eeEeeccc-CCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 340 --LKMIKEHI-GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 340 --~~~~~~h~-~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
...+..+. ...+..++++ ++.++++...|+..++|.++
T Consensus 308 ~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 308 ASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp GGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred cCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 24444443 3357888888 67888999999999988763
No 198
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.13 E-value=3.1e-05 Score=90.65 Aligned_cols=443 Identities=9% Similarity=0.017 Sum_probs=239.5
Q ss_pred eEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeecccc-EEeEEeccccCCCCCCccceeeEEEEEcCCe
Q 003423 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIR-LHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (821)
Q Consensus 20 Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~-i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~ 98 (821)
|.++... ++ +.+.+++. .-|..||.++++............ |..+...+++ .+.+...++.
T Consensus 133 i~~i~~d--~~----g~lwi~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g-----------~lwigt~~~G 194 (795)
T 4a2l_A 133 VNGIEEI--SP----EQLLISTP-EGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGD-----------QIYIGTSTDG 194 (795)
T ss_dssp CCEEEEE--ET----TEEEEEET-TEEEEEETTTTEEECSSSCHHHHTCCEEEEEEETT-----------EEEEEESSSC
T ss_pred EEEEEEC--CC----CCEEEEEC-CceEEEECCCCEEEeccCCCCCCcceEEEEECCCC-----------CEEEEECCCC
Confidence 7788877 66 44555444 569999988776432111111123 6666665432 3444444445
Q ss_pred EEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccC--
Q 003423 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP-- 176 (821)
Q Consensus 99 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~-- 176 (821)
+..|+...+. +.... .......|.++...+ ++.+.+ |+.++-+..||..+++...-...+
T Consensus 195 l~~~~~~~~~-------------~~~~~-~~~~~~~i~~i~~d~---~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~ 256 (795)
T 4a2l_A 195 LYTYSITQKT-------------FEKVI-PILGTKQIQAILQQS---PTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSN 256 (795)
T ss_dssp EEEEETTTCC-------------EEECC-----CCCEEEEEEEE---TTEEEE-EEBSSCEEEEETTTTEEEEECCCTTC
T ss_pred EEEEeCCCCe-------------EEEec-CCCCCCeeEEEEEcC---CCCEEE-EECCCCeEEEeCCCCeEEEeecCCCC
Confidence 7777754321 11110 011346788888877 776444 555555889998776543221111
Q ss_pred ----cceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE
Q 003423 177 ----ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (821)
Q Consensus 177 ----~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (821)
....++++.. ..++. |..|+.+ -|.+|+... .. +..+
T Consensus 257 ~~~l~~~~i~~i~~---d~~g~-lWigt~~-Gl~~~~~~~---------------------------------~~-~~~~ 297 (795)
T 4a2l_A 257 PKSISSNYIRSLAM---DSQNR-LWIGTFN-DLNIYHEGT---------------------------------DS-FASY 297 (795)
T ss_dssp TTSCSCSBEEEEEE---CTTSC-EEEEESS-CEEEEETTT---------------------------------TE-EEEE
T ss_pred ccccCCCeEEEEEE---cCCCC-EEEEeCC-hhheEcCCC---------------------------------Ce-EEEE
Confidence 1234666654 33444 4445555 578888761 11 1111
Q ss_pred e--------cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceE--EeccceeEEEEEEc-CCEE
Q 003423 253 V--------GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV--LYGHNARVWDCCLT-DSFI 321 (821)
Q Consensus 253 ~--------~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~h~~~i~~v~~~-~~~l 321 (821)
. -....|.++...++|.+.+ |+.++-|..|+...... ....... -.-....|.++... ...|
T Consensus 298 ~~~~~~~~~l~~~~i~~i~~D~~g~lWi-gt~~~Gl~~~~~~~~~~------~~~~~~~~~~~l~~~~V~~i~~d~~g~l 370 (795)
T 4a2l_A 298 SSNPVENGSLSQRSVRSIFMDSQGGMWL-GTYFGGLNYYHPIRNRF------KNIRNIPYKNSLSDNVVSCIVEDKDKNL 370 (795)
T ss_dssp CCCTTSTTSCSSSCEEEEEECTTSCEEE-EESSSCEEEECGGGGSS------EEECCCTTSSSCSCSSEEEEEECTTSCE
T ss_pred ecCCCCCCCCCCCcEEEEEEeCCcCEEE-EECCCCeEEeCCCcccc------eEEcCCCCCCCCCCCeeEEEEECCCCCE
Confidence 1 1235799999999887555 56667788898766433 1110000 00023468888887 4677
Q ss_pred EEEeCCCeEEEEcCCCceeeEeec--------ccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccc
Q 003423 322 ITAGEDCTCRVWGSDGKQLKMIKE--------HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKE 393 (821)
Q Consensus 322 ~s~~~dg~i~iwd~~~~~~~~~~~--------h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~ 393 (821)
..|..++-+..|+........+.. -....|.++..+++++.|..|+.++.|..+|..+.....+..
T Consensus 371 WiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~------ 444 (795)
T 4a2l_A 371 WIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQ------ 444 (795)
T ss_dssp EEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECT------
T ss_pred EEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeec------
Confidence 788888889999985443433321 112358999998888867778887789999985432211100
Q ss_pred cCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeeec-----cCCcceE
Q 003423 394 FNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQV-----SEGMPII 468 (821)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~-----~~~~~i~ 468 (821)
... ......|.++...+++.+.+++.+| ++. ++..+..+...... .....+.
T Consensus 445 ------------~~~-------~l~~~~v~~i~~d~~g~lwigt~~G-l~~---~~~~~~~~~~~~~~~~~~~~~~~~i~ 501 (795)
T 4a2l_A 445 ------------RNS-------QLVNENVYAILPDGEGNLWLGTLSA-LVR---FNPEQRSFTTIEKEKDGTPVVSKQIT 501 (795)
T ss_dssp ------------TTS-------CCSCSCEEEEEECSSSCEEEEESSC-EEE---EETTTTEEEECCBCTTCCBCCCCCEE
T ss_pred ------------CCC-------CcCCCeeEEEEECCCCCEEEEecCc-eeE---EeCCCCeEEEccccccccccCCceEE
Confidence 000 0113458999999999999998744 543 33334444433221 0123455
Q ss_pred EEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEee--c-cC-ccceeeeeEEeecCCCeEEEEECCC
Q 003423 469 CMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTW--S-AG-IERQLLGTYWCKSLGHRFIFTADPK 544 (821)
Q Consensus 469 ~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~--~-~~-~~~~~~~~~~~~~~~~~~l~~~~~d 544 (821)
++.... + ..+.+|+. +.+..|+..+... .+.. . .. ....+.. .+..+++.+.++.. .
T Consensus 502 ~i~~d~--------~-g~lWigt~-~Gl~~~~~~~~~~------~~~~~~~~~~l~~~~i~~--i~~d~~g~lWigT~-~ 562 (795)
T 4a2l_A 502 TLFRDS--------H-KRLWIGGE-EGLSVFKQEGLDI------QKASILPVSNVTKLFTNC--IYEASNGIIWVGTR-E 562 (795)
T ss_dssp EEEECT--------T-CCEEEEES-SCEEEEEEETTEE------EECCCSCSCGGGGSCEEE--EEECTTSCEEEEES-S
T ss_pred EEEECC--------C-CCEEEEeC-CceEEEeCCCCeE------EEecCCCCCCCCCCeeEE--EEECCCCCEEEEeC-C
Confidence 544432 2 33444555 5688888655322 1100 0 00 0111221 23446677666554 3
Q ss_pred CcEEEeeecCCCCcccccCCccceeeeeEEEec--c-cCceEEEEEeecCCCEEEEEcCCCcEEEEecC
Q 003423 545 GRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSS--C-FGARIMCLDASFEDEVLFCGDLRGNLVLFPLL 610 (821)
Q Consensus 545 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~-h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~ 610 (821)
| +..||.... .. ..+.. + ....|.++...++|++.+++ . +-|..|+..
T Consensus 563 G-l~~~d~~~~--------------~~-~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~ 613 (795)
T 4a2l_A 563 G-FYCFNEKDK--------------QI-KRYNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPE 613 (795)
T ss_dssp C-EEEEETTTT--------------EE-EEECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETT
T ss_pred C-ceeECCCCC--------------cE-EEeCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCC
Confidence 4 677876543 11 11111 1 13458888888888877766 3 346777755
No 199
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.10 E-value=2e-09 Score=111.81 Aligned_cols=171 Identities=9% Similarity=0.017 Sum_probs=128.1
Q ss_pred cEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc-----------eeEEEccCcceeEEEEeeccCCccCeEEEEEeeC
Q 003423 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-----------IILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (821)
Q Consensus 134 ~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~-----------~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d 202 (821)
.+..+++++ ...++++|+.+ .+++|++.+.. ...... ... ++.+.| ++.+|+++ .+
T Consensus 39 ~~nlLais~---~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~--lp~-V~~l~f-----d~~~L~v~-~~ 105 (388)
T 1xip_A 39 SLQNLDISN---SKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKE--IPD-VIFVCF-----HGDQVLVS-TR 105 (388)
T ss_dssp CCBCEEEET---TTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEE--CTT-EEEEEE-----ETTEEEEE-ES
T ss_pred cccEEEEcC---CCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEee--CCC-eeEEEE-----CCCEEEEE-cC
Confidence 588899999 99999999987 56669876433 111222 223 777777 67888888 88
Q ss_pred CEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 003423 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARI 282 (821)
Q Consensus 203 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~i 282 (821)
+.|++||+. +.........|+..|.++.+.+. .+++++.||.|.+
T Consensus 106 ~~l~v~dv~---------------------------------sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v 150 (388)
T 1xip_A 106 NALYSLDLE---------------------------------ELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSA 150 (388)
T ss_dssp SEEEEEESS---------------------------------STTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEE
T ss_pred CcEEEEEch---------------------------------hhhccCccceeecceeeEEecCC--CEEEEECCCCEEE
Confidence 999999998 22223344567788999888765 3889999999999
Q ss_pred EecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEcCCCce---eeEe------e---cccCCC
Q 003423 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQ---LKMI------K---EHIGRG 350 (821)
Q Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~------~---~h~~~~ 350 (821)
||+.++.. . .+...|.+++|+++-++.+..||++++|+.++.. ..++ . +|.. .
T Consensus 151 ~dl~~~~~-----------~---~~~~~Vs~v~WSpkG~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~-~ 215 (388)
T 1xip_A 151 LDLRTKST-----------K---QLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEY-S 215 (388)
T ss_dssp EETTTCCE-----------E---EEEESEEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTS-E
T ss_pred EEccCCcc-----------c---cccCCceEEEEcCCceEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCe-e
Confidence 99997643 1 1456899999997778999999999999986655 4455 2 2454 6
Q ss_pred eEEEEEecCCCEEEEEe
Q 003423 351 IWRCLYDSLSSLLVTAG 367 (821)
Q Consensus 351 i~~l~~~~~~~~l~tg~ 367 (821)
|.++.|.+++.++++-+
T Consensus 216 V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 216 PLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEESSSSEEEEEEE
T ss_pred EEEEEEecCCeEEEEEc
Confidence 99999999988887644
No 200
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.08 E-value=1.9e-08 Score=100.88 Aligned_cols=230 Identities=7% Similarity=-0.012 Sum_probs=143.6
Q ss_pred cEEEEEEeecCCCCCEEE-EEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEccc
Q 003423 134 WVFDVCFLKVCNGNRSLA-IGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (821)
Q Consensus 134 ~I~~~~~~~~~~~~~~l~-t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~ 212 (821)
...+++++| ++++++ +...++.|.+||..+..... +..........+++ ++++.++++.. ++.|.+||...
T Consensus 25 ~p~~i~~~~---~g~l~v~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~p~~i~~---~~~g~l~v~~~-~~~i~~~d~~~ 96 (270)
T 1rwi_B 25 SPSGVAVDS---AGNVYVTSEGMYGRVVKLATGSTGTTV-LPFNGLYQPQGLAV---DGAGTVYVTDF-NNRVVTLAAGS 96 (270)
T ss_dssp CEEEEEECT---TCCEEEEECSSSCEEEEECC-----EE-CCCCSCCSCCCEEE---CTTCCEEEEET-TTEEEEECTTC
T ss_pred CccceEECC---CCCEEEEccCCCCcEEEecCCCcccce-EeeCCcCCcceeEE---CCCCCEEEEcC-CCEEEEEeCCC
Confidence 678899998 888666 44678899999976544321 11111112233444 45677666555 88999999771
Q ss_pred CCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEe-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCccc
Q 003423 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK 291 (821)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~ 291 (821)
... ..+. .....+.+++++++|+++++...++.|.+|+..+...
T Consensus 97 ---------------------------------~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~- 141 (270)
T 1rwi_B 97 ---------------------------------NNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ- 141 (270)
T ss_dssp ---------------------------------SCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC-
T ss_pred ---------------------------------ceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee-
Confidence 111 1111 2335689999999999888888889999997654322
Q ss_pred CCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcCCCceeeEee-cccCCCeEEEEEecCCCEEEEEeC
Q 003423 292 DSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIK-EHIGRGIWRCLYDSLSSLLVTAGF 368 (821)
Q Consensus 292 ~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~-~h~~~~i~~l~~~~~~~~l~tg~~ 368 (821)
. .........+.++++. +..+++...++.|.+|+.++....... .+.. .+..++++++|.+.++...
T Consensus 142 ----~-----~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~p~~i~~d~~g~l~v~~~~ 211 (270)
T 1rwi_B 142 ----T-----VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDIT-APWGIAVDEAGTVYVTEHN 211 (270)
T ss_dssp ----E-----ECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCC-SEEEEEECTTCCEEEEETT
T ss_pred ----E-----eeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCC-CceEEEECCCCCEEEEECC
Confidence 1 1112223356778887 455566666789999999654443322 2223 5889999999987777777
Q ss_pred CCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEec-CCcEEEE
Q 003423 369 DSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN-HGYLYHT 445 (821)
Q Consensus 369 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~-~g~~~~~ 445 (821)
++.|.+|+..+...... ....-..+..+++++++.++++.. ++.+..+
T Consensus 212 ~~~v~~~~~~~~~~~~~-----------------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~ 260 (270)
T 1rwi_B 212 TNQVVKLLAGSTTSTVL-----------------------------PFTGLNTPLAVAVDSDRTVYVADRGNDRVVKL 260 (270)
T ss_dssp TSCEEEECTTCSCCEEC-----------------------------CCCSCSCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred CCcEEEEcCCCCcceee-----------------------------ccCCCCCceeEEECCCCCEEEEECCCCEEEEE
Confidence 88999999854311110 000113478999999998777654 4555543
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.06 E-value=4.1e-07 Score=95.43 Aligned_cols=260 Identities=7% Similarity=-0.119 Sum_probs=156.9
Q ss_pred eEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE----------cCCeEEEEEEeecCCCCCCC
Q 003423 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF----------GEKRVKLFELNFELSPNSQY 114 (821)
Q Consensus 45 ~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~----------g~~~v~i~~~~~~~~~~~~~ 114 (821)
.|.+||..+++.+.++..... - ++.++|++ + .++++. .++.|.+||....
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~--p-~i~~spDg-------~---~lyv~n~~~~~~~rg~~~~~v~viD~~t~------- 107 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFL--P-NPVAAHSG-------S---EFALASTSFSRIAKGKRTDYVEVFDPVTF------- 107 (373)
T ss_pred EEEEEECCCCeEEEEecCCCC--C-CeEECCCC-------C---EEEEEeccccccccCCCCCeEEEEECCCC-------
Confidence 899999999999888775322 2 88888663 2 333332 2578999998632
Q ss_pred CCccccccceeeeccC-------CCCcEEEEEEeecCCCCCEEEEEEC--CCcEEEEEccCCceeEE-EccCcceeEEEE
Q 003423 115 QPETCVNLSLVQSLPR-------LSHWVFDVCFLKVCNGNRSLAIGCS--DNSIRVWDISNSSIILE-VHSPERCLLYSM 184 (821)
Q Consensus 115 ~~~~~~~~~~~~~~~~-------h~~~I~~~~~~~~~~~~~~l~t~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~~~s~ 184 (821)
+.+..+.- +......++|+| +|++|+++.. ++.|.++| .+++.+.+ +..+.. ..
T Consensus 108 --------~~~~~i~~~~~~~~~~g~~p~~~~~sp---DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~-~~--- 171 (373)
T 2mad_H 108 --------LPIADIELPDAPRFDVGPYSWMNANTP---NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC-YH--- 171 (373)
T ss_pred --------cEEEEEECCCccccccCCCccceEECC---CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce-EE---
Confidence 22222211 012345799999 9999998874 57899999 99988877 654432 21
Q ss_pred eeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEE
Q 003423 185 KLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEW 264 (821)
Q Consensus 185 ~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~ 264 (821)
+. ......+++.+.||.+.+++. ........ ..... +.+.........+
T Consensus 172 -~~--~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~-------------------------~~~~~--~~~~~p~~~~~~~ 220 (373)
T 2mad_H 172 -IH--PGAPSTFYLLCAQGGLAKTDH-AGGAAGAG-------------------------LVGAM--LTAAQNLLTQPAQ 220 (373)
T ss_pred -EE--eCCCceEEEEcCCCCEEEEEC-CCcEEEEE-------------------------ecccc--ccCCcceeeccee
Confidence 11 122345566677899999987 32110000 00000 0111111233456
Q ss_pred cCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEe--------ccceeEEEEEEc--CCEEEEEeC--------
Q 003423 265 SSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY--------GHNARVWDCCLT--DSFIITAGE-------- 326 (821)
Q Consensus 265 s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--------~h~~~i~~v~~~--~~~l~s~~~-------- 326 (821)
.+++..++..+.++.+.+.|+..... ..+....+. ........+.++ ++.++.+..
T Consensus 221 ~~~~~~~~~~~~~~~v~vid~~~~~~------~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~ 294 (373)
T 2mad_H 221 ANKSGRIVWPVYSGKILQADISAAGA------TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLH 294 (373)
T ss_pred EecCCEEEEEcCCceEEEEeccCCcc------eEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCccccc
Confidence 66665544445678899999865432 111000000 011223335666 356665543
Q ss_pred --CCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCC-EEEEEe-CCCcEEEEEcCC
Q 003423 327 --DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAG-FDSAIKVHQFQA 379 (821)
Q Consensus 327 --dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~-~l~tg~-~dg~I~iwd~~~ 379 (821)
++.|.+.|. +++.+.++.... ..++++|+|+|+ .++++. .++.|.++|..+
T Consensus 295 ~~~~~V~VID~~t~~vv~~i~~g~--~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t 350 (373)
T 2mad_H 295 AAAKEVTSVTGLVGQTSSQISLGH--DVDAISVAQDGGPDLYALSAGTEVLHIYDAGA 350 (373)
T ss_pred CCCCeEEEEECCCCEEEEEEECCC--CcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 357999999 677778885433 478999999999 788877 589999999965
No 202
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.04 E-value=1e-08 Score=118.25 Aligned_cols=250 Identities=5% Similarity=-0.120 Sum_probs=149.9
Q ss_pred eeeEEEEEeccCCCCCCcceEEe-----ec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEE
Q 003423 18 GEISALCFVHLPSHLSSLPFLLA-----GS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (821)
Q Consensus 18 ~~Vt~l~~~~~p~~~~~~~~l~~-----g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l 91 (821)
..+.+++|| || +++||. |. +..|++||+.+|+.+.... .......++.|+|++ + .++
T Consensus 121 ~~~~~~~~S--PD----G~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~~~~~~~~wspDg-------~---~l~ 183 (695)
T 2bkl_A 121 VSLGTWAVS--WD----GKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV-IEGGKYATPKWTPDS-------K---GFY 183 (695)
T ss_dssp EEEEEEEEC--TT----SSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC-BSCCTTCCCEECTTS-------S---EEE
T ss_pred EEEEEEEEC--CC----CCEEEEEECCCCCceEEEEEEECCCCCCcCCcc-cCcccccceEEecCC-------C---EEE
Confidence 368899999 99 667763 32 3689999999998751111 112122567888553 2 444
Q ss_pred EEEcCCe-------------EEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCC-
Q 003423 92 ALFGEKR-------------VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN- 157 (821)
Q Consensus 92 ~~~g~~~-------------v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~- 157 (821)
.+..+.. |++|++..+.. .-.++.....|...+..+.|+| +|++|+.++.++
T Consensus 184 ~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~-----------~~~lv~~~~~~~~~~~~~~~Sp---DG~~l~~~~~~~~ 249 (695)
T 2bkl_A 184 YEWLPTDPSIKVDERPGYTTIRYHTLGTEPS-----------KDTVVHERTGDPTTFLQSDLSR---DGKYLFVYILRGW 249 (695)
T ss_dssp EEECCCCTTSCGGGGGGGCEEEEEETTSCGG-----------GCEEEECCCCCTTCEEEEEECT---TSCCEEEEEEETT
T ss_pred EEEecCCCCCccccCCCCCEEEEEECCCCch-----------hceEEEecCCCCEEEEEEEECC---CCCEEEEEEeCCC
Confidence 4544443 88888865420 0124455566777899999999 999988877665
Q ss_pred ---cEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEe---eCCEEEEEEcccCCcccCCCCCCCcccCCCC
Q 003423 158 ---SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT---IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSS 231 (821)
Q Consensus 158 ---~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 231 (821)
.|.+||..++. ...+..+.....+.+ + +++.+++... .++.|.+||+.+.
T Consensus 250 ~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~-~----~~g~l~~~s~~~~~~~~l~~~d~~~~------------------ 305 (695)
T 2bkl_A 250 SENDVYWKRPGEKD-FRLLVKGVGAKYEVH-A----WKDRFYVLTDEGAPRQRVFEVDPAKP------------------ 305 (695)
T ss_dssp TEEEEEEECTTCSS-CEEEEECSSCCEEEE-E----ETTEEEEEECTTCTTCEEEEEBTTBC------------------
T ss_pred CceEEEEEcCCCCc-eEEeecCCCceEEEE-e----cCCcEEEEECCCCCCCEEEEEeCCCC------------------
Confidence 66777655443 344444433332222 2 3445444443 2588999998711
Q ss_pred CCcceeeecccccceeeEEEEecC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEeccc-CcccCCCCceeeeceEEecc-
Q 003423 232 SDFKCFKLQDQQHTAVNLFRLVGH--EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA-EYWKDSDSIEEVGSSVLYGH- 307 (821)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~h--~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~h- 307 (821)
.......+..| ...|..++|+ ++.++++...|+..+||.+.. ++. . ..+..+
T Consensus 306 -------------~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~-----~-----~~l~~~~ 361 (695)
T 2bkl_A 306 -------------ARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKP-----V-----RTVQLPG 361 (695)
T ss_dssp -------------SGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCE-----E-----EECCCSS
T ss_pred -------------CccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCe-----e-----EEecCCC
Confidence 00001222333 4568889998 677889999999999997763 222 1 233333
Q ss_pred ceeEEEEEEc--CCEEE-EE---eCCCeEEEEcCCCceeeEeecc
Q 003423 308 NARVWDCCLT--DSFII-TA---GEDCTCRVWGSDGKQLKMIKEH 346 (821)
Q Consensus 308 ~~~i~~v~~~--~~~l~-s~---~~dg~i~iwd~~~~~~~~~~~h 346 (821)
...+..+.++ ++.++ +. ...+++.+||+.......+..+
T Consensus 362 ~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~~~ 406 (695)
T 2bkl_A 362 VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWAKV 406 (695)
T ss_dssp SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEecC
Confidence 5566667776 34444 33 2347899999954334455443
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.04 E-value=8.7e-08 Score=98.96 Aligned_cols=258 Identities=10% Similarity=-0.010 Sum_probs=161.6
Q ss_pred CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE----------cCCeEEEEEEeecCCCCC
Q 003423 43 GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF----------GEKRVKLFELNFELSPNS 112 (821)
Q Consensus 43 ~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~----------g~~~v~i~~~~~~~~~~~ 112 (821)
++.|.++|..+++.+.++..-.. + + +.++|++ + .++++. .++.|.+||..+.
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spDG-------~---~lyVan~~~~r~~~G~~~~~VsviD~~t~----- 119 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADDG-------S---FIAHASTVFSRIARGERTDYVEVFDPVTL----- 119 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSS-C-E-EEECTTS-------S---CEEEEEEEEEETTEEEEEEEEEEECTTTC-----
T ss_pred CCEEEEEECCCCeEEEEEECCCC-C-c-EEECCCC-------C---EEEEEcccccccccCCCCCEEEEEECCCC-----
Confidence 57999999999999999987544 3 5 8999664 2 333332 2578999997643
Q ss_pred CCCCccccccceeeeccCC-------CCcEEEEEEeecCCCCCEEEEEEC--CCcEEEEEccCCceeEEEccCcceeEEE
Q 003423 113 QYQPETCVNLSLVQSLPRL-------SHWVFDVCFLKVCNGNRSLAIGCS--DNSIRVWDISNSSIILEVHSPERCLLYS 183 (821)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~h-------~~~I~~~~~~~~~~~~~~l~t~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~s 183 (821)
+....+.-- ...-..++|+| +|++|+++.. ++.|.++|+.+++.+.++..+....++.
T Consensus 120 ----------~v~~~I~v~~g~r~~~g~~P~~~a~sp---DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P 186 (386)
T 3sjl_D 120 ----------LPTADIELPDAPRFLVGTYPWMTSLTP---DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFP 186 (386)
T ss_dssp ----------CEEEEEEETTCCCCCBSCCGGGEEECT---TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEE
T ss_pred ----------eEEEEEECCCccccccCCCCceEEEcC---CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeec
Confidence 233333210 12345689999 9999888864 6899999999999999886554222221
Q ss_pred EeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecC----CCcE
Q 003423 184 MKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH----EGSI 259 (821)
Q Consensus 184 ~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~I 259 (821)
.....+++.+.||++.+.+.... .+.......+ ...+
T Consensus 187 -------~g~~~~~~~~~DG~~~~v~~~~~--------------------------------g~v~~~~~~~~~~~~~~~ 227 (386)
T 3sjl_D 187 -------TAPDTFFMHCRDGSLAKVAFGTE--------------------------------GTPEITHTEVFHPEDEFL 227 (386)
T ss_dssp -------EETTEEEEEETTSCEEEEECCSS--------------------------------SCCEEEECCCCSCTTSCB
T ss_pred -------CCCceeEEECCCCCEEEEECCCC--------------------------------CeEEEeecceeccccccc
Confidence 23456667788999999988720 0100100001 1122
Q ss_pred E-EEEEc-CCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEec--------cceeEEEEEEc--CCEEEEEeC-
Q 003423 260 F-RIEWS-SCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG--------HNARVWDCCLT--DSFIITAGE- 326 (821)
Q Consensus 260 ~-~l~~s-~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--------h~~~i~~v~~~--~~~l~s~~~- 326 (821)
+ ...|. ++|++++ .+.+|+|.+.|+..... +...+..+.. .......++++ .+.++....
T Consensus 228 ~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~------~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~ 300 (386)
T 3sjl_D 228 INHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDA------KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ 300 (386)
T ss_dssp CSCCEEETTTTEEEE-EBTTSEEEEEECTTSSC------EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred cccceeEcCCCcEEE-EeCCCEEEEEECCCCcc------eeecceeccccccccccccCCCcceeeECCCCCeEEEEecc
Confidence 2 13554 6775555 56689999999876542 1111001000 11112234445 456655432
Q ss_pred ---------CCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCC-EEEEE-eCCCcEEEEEcCC
Q 003423 327 ---------DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTA-GFDSAIKVHQFQA 379 (821)
Q Consensus 327 ---------dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~-~l~tg-~~dg~I~iwd~~~ 379 (821)
.+.|.+.|+ +++.+.++.... .+++++++++++ +|++. ..++.|.++|..+
T Consensus 301 ~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t 363 (386)
T 3sjl_D 301 RDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDAES 363 (386)
T ss_dssp CCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEEETTT
T ss_pred ccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 256888888 788888876543 488999999996 66665 4589999999854
No 204
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.98 E-value=2.3e-07 Score=95.37 Aligned_cols=223 Identities=9% Similarity=0.020 Sum_probs=136.5
Q ss_pred EcCCeEEEEEEeecCCCCCCCCCccccccceee--eccCCCCcEEEEEEeecCCC-CCEEEEEECCCcEEEEEccCCcee
Q 003423 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQ--SLPRLSHWVFDVCFLKVCNG-NRSLAIGCSDNSIRVWDISNSSII 170 (821)
Q Consensus 94 ~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~I~~~~~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~ 170 (821)
..++.|.+|+...+. ..... ...++...+.++++++ + +++++ ++..+.|.+||.. ++..
T Consensus 43 ~~~~~i~~~d~~~g~-------------~~~~~~~~~~~~~~~~~~i~~~~---~~g~l~v-~~~~~~l~~~d~~-g~~~ 104 (314)
T 1pjx_A 43 KPAGEILRIDLKTGK-------------KTVICKPEVNGYGGIPAGCQCDR---DANQLFV-ADMRLGLLVVQTD-GTFE 104 (314)
T ss_dssp EECCEEEEECTTTCC-------------EEEEECCEETTEECCEEEEEECS---SSSEEEE-EETTTEEEEEETT-SCEE
T ss_pred CCCCEEEEEeCCCCc-------------EEEEEecccCCCCCCCceEEEec---CCCcEEE-EECCCCEEEEeCC-CCEE
Confidence 557888888765332 11111 0123456789999998 8 66444 4445579999987 6543
Q ss_pred EE-EccC---cceeEEEEeeccCCccCeEEEEEeeC---------------CEEEEEEcccCCcccCCCCCCCcccCCCC
Q 003423 171 LE-VHSP---ERCLLYSMKLWGDNLEALRIASGTIY---------------NEIIVWKVDWEHVAPLLNSPEGNHAHGSS 231 (821)
Q Consensus 171 ~~-~~~~---~~~~~~s~~~~~~s~~~~~l~sg~~d---------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 231 (821)
.. .... ....+..+.+ ++++.+.++...+ +.|..|+..
T Consensus 105 ~~~~~~~~~~~~~~~~~i~~---d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------- 161 (314)
T 1pjx_A 105 EIAKKDSEGRRMQGCNDCAF---DYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-------------------- 161 (314)
T ss_dssp ECCSBCTTSCBCBCCCEEEE---CTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--------------------
T ss_pred EEEeccCCCccccCCcCEEE---CCCCCEEEEecCcccccccccccccCCCCeEEEECCC--------------------
Confidence 22 1111 1112344544 4667766665544 345555433
Q ss_pred CCcceeeecccccceeeEEEEecCCCcEEEEEEc----CCCCEE-EEEeCCCeEEEEecc-cCcccCCCCceeee-ceEE
Q 003423 232 SDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS----SCGSKL-VSVSDDRSARIWEVR-AEYWKDSDSIEEVG-SSVL 304 (821)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s----~~~~~l-~s~s~Dg~i~iwd~~-~~~~~~~~~~~~~~-~~~~ 304 (821)
.+ ...+..+.....+++++ |+++.| ++...++.|.+||.. ++.. .... ...+
T Consensus 162 --------------g~-~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~------~~~~~~~~~ 220 (314)
T 1pjx_A 162 --------------GQ-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI------ENKKVWGHI 220 (314)
T ss_dssp --------------SC-EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE------EEEEEEEEC
T ss_pred --------------CC-EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc------ccceEEEEC
Confidence 11 11122334456889999 999755 555678999999986 3321 1100 0123
Q ss_pred eccc-eeEEEEEEc--CCEEEEEeCCCeEEEEcCC-CceeeEeecccCCCeEEEEEecCCCEEE-EEeCCCcEEEEEcCC
Q 003423 305 YGHN-ARVWDCCLT--DSFIITAGEDCTCRVWGSD-GKQLKMIKEHIGRGIWRCLYDSLSSLLV-TAGFDSAIKVHQFQA 379 (821)
Q Consensus 305 ~~h~-~~i~~v~~~--~~~l~s~~~dg~i~iwd~~-~~~~~~~~~h~~~~i~~l~~~~~~~~l~-tg~~dg~I~iwd~~~ 379 (821)
.++. ..+..+++. +..+++...++.|.+|+.+ ++.+..+..+.. .+.+++++++++.|+ +...++.|..|++..
T Consensus 221 ~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 221 PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCC-CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 3333 567788887 4666666678999999996 777777776655 589999999999555 445568899998853
No 205
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.96 E-value=5.4e-07 Score=92.49 Aligned_cols=243 Identities=9% Similarity=0.024 Sum_probs=147.5
Q ss_pred eeEEEEEeccCCCCCCcceEEe--------ecCCeEEEEECCCCeeeeEEEee----ccccEEeEEeccc-cCCCCCCcc
Q 003423 19 EISALCFVHLPSHLSSLPFLLA--------GSGSQVLLYDLEAGTLIRPFQVF----HGIRLHGISCNFI-NCTEGSVST 85 (821)
Q Consensus 19 ~Vt~l~~~~~p~~~~~~~~l~~--------g~~~~i~iwd~~t~~~~~~~~~~----~~~~i~~i~~~~~-~~~~~~~~~ 85 (821)
...+++|+ ++ +.++++ ..++.|.+||..+++... +... ....+.++.++++ +
T Consensus 19 ~~~~~~~~--~~----g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~g-------- 83 (314)
T 1pjx_A 19 GAEGPVFD--KN----GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPEVNGYGGIPAGCQCDRDAN-------- 83 (314)
T ss_dssp TCEEEEEC--TT----SCEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCEETTEECCEEEEEECSSSS--------
T ss_pred CccCceEC--CC----CCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecccCCCCCCCceEEEecCCC--------
Confidence 35789999 87 566666 447899999998887643 2210 1235888888855 3
Q ss_pred ceeeEEEEEcCCeEEEEEEeecCCCCCCCCCcccccccee-ee-ccC-CCCcEEEEEEeecCCCCCEEEEEECC------
Q 003423 86 RVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLV-QS-LPR-LSHWVFDVCFLKVCNGNRSLAIGCSD------ 156 (821)
Q Consensus 86 ~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~-h~~~I~~~~~~~~~~~~~~l~t~~~d------ 156 (821)
.++++..++.|.+|+.+ +. .... .. ..+ ....+.++++.| ++++.++...+
T Consensus 84 ---~l~v~~~~~~l~~~d~~-g~-------------~~~~~~~~~~~~~~~~~~~i~~d~---~g~l~v~~~~~~~~~~~ 143 (314)
T 1pjx_A 84 ---QLFVADMRLGLLVVQTD-GT-------------FEEIAKKDSEGRRMQGCNDCAFDY---EGNLWITAPAGEVAPAD 143 (314)
T ss_dssp ---EEEEEETTTEEEEEETT-SC-------------EEECCSBCTTSCBCBCCCEEEECT---TSCEEEEECBCBCTTSC
T ss_pred ---cEEEEECCCCEEEEeCC-CC-------------EEEEEeccCCCccccCCcCEEECC---CCCEEEEecCccccccc
Confidence 35555555578888865 32 1111 11 111 124588999999 89877766544
Q ss_pred ---------CcEEEEEccCCceeEEEccCcceeEEEEeec-cCCccCeEE-EEEeeCCEEEEEEcccCCcccCCCCCCCc
Q 003423 157 ---------NSIRVWDISNSSIILEVHSPERCLLYSMKLW-GDNLEALRI-ASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (821)
Q Consensus 157 ---------~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~-~~s~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~ 225 (821)
+.|..||.. ++......... ....+.+. ..++++..+ ++...++.|.+|+......
T Consensus 144 ~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~--~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~---------- 210 (314)
T 1pjx_A 144 YTRSMQEKFGSIYCFTTD-GQMIQVDTAFQ--FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAK---------- 210 (314)
T ss_dssp CCBTTSSSCEEEEEECTT-SCEEEEEEEES--SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTE----------
T ss_pred ccccccCCCCeEEEECCC-CCEEEeccCCC--CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCc----------
Confidence 456666654 44322221111 12233331 011566554 4445679999999751000
Q ss_pred ccCCCCCCcceeeecccccceeeEEEEecCC-CcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEE
Q 003423 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE-GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (821)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 304 (821)
.........+.++. ..+.+++++++|+++++...++.|.+||..+++. . ..+
T Consensus 211 -----------------~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~-----~-----~~~ 263 (314)
T 1pjx_A 211 -----------------IENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP-----K-----MRI 263 (314)
T ss_dssp -----------------EEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC-----S-----EEE
T ss_pred -----------------cccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcE-----e-----EEE
Confidence 00112233344454 6788999999999989888889999999885543 2 244
Q ss_pred eccceeEEEEEEc--CCEE-EEEeCCCeEEEEcCC
Q 003423 305 YGHNARVWDCCLT--DSFI-ITAGEDCTCRVWGSD 336 (821)
Q Consensus 305 ~~h~~~i~~v~~~--~~~l-~s~~~dg~i~iwd~~ 336 (821)
..+...+.+++++ ++.| ++...++.|..|+++
T Consensus 264 ~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 264 RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 4555778999997 3534 455566889999873
No 206
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.96 E-value=1.5e-08 Score=105.12 Aligned_cols=173 Identities=14% Similarity=0.055 Sum_probs=121.0
Q ss_pred eeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCe-----------eeeEEEeeccccEEeEEeccccCCCCCCccc
Q 003423 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT-----------LIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (821)
Q Consensus 18 ~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~-----------~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~ 86 (821)
.+++.|+++ +. ..++++|....+.+|++++.+ ...... -.. |+.+.| ++
T Consensus 38 ~~~nlLais--~~----~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~--lp~-V~~l~f--d~--------- 97 (388)
T 1xip_A 38 ASLQNLDIS--NS----KSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE--IPD-VIFVCF--HG--------- 97 (388)
T ss_dssp SCCBCEEEE--TT----TTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE--CTT-EEEEEE--ET---------
T ss_pred ccccEEEEc--CC----CCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee--CCC-eeEEEE--CC---------
Confidence 369999999 77 678888887788889976543 112222 233 888988 32
Q ss_pred eeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccC
Q 003423 87 VTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (821)
Q Consensus 87 ~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~ 166 (821)
..+++..++.|++|++.... .......|...+.++.+.+ . .+|+++.||.|.+||+.+
T Consensus 98 --~~L~v~~~~~l~v~dv~sl~---------------~~~~~~~~~~~v~~i~~~~---p--~~av~~~dG~L~v~dl~~ 155 (388)
T 1xip_A 98 --DQVLVSTRNALYSLDLEELS---------------EFRTVTSFEKPVFQLKNVN---N--TLVILNSVNDLSALDLRT 155 (388)
T ss_dssp --TEEEEEESSEEEEEESSSTT---------------CEEEEEECSSCEEEEEECS---S--EEEEEETTSEEEEEETTT
T ss_pred --CEEEEEcCCcEEEEEchhhh---------------ccCccceeecceeeEEecC---C--CEEEEECCCCEEEEEccC
Confidence 35555588999999987432 2233445666788887765 3 288899999999999998
Q ss_pred CceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccce
Q 003423 167 SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (821)
Q Consensus 167 ~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (821)
+.... +... +.++++ ++++ ++.|..||.+++|+.. ..
T Consensus 156 ~~~~~-~~~~----Vs~v~W---SpkG--~~vg~~dg~i~~~~~~---------------------------------~~ 192 (388)
T 1xip_A 156 KSTKQ-LAQN----VTSFDV---TNSQ--LAVLLKDRSFQSFAWR---------------------------------NG 192 (388)
T ss_dssp CCEEE-EEES----EEEEEE---CSSE--EEEEETTSCEEEEEEE---------------------------------TT
T ss_pred Ccccc-ccCC----ceEEEE---cCCc--eEEEEcCCcEEEEcCC---------------------------------Cc
Confidence 77643 3333 334444 4777 6788999999999887 22
Q ss_pred ee--EEEE------e---cCCCcEEEEEEcCCCCEEEEEe
Q 003423 247 VN--LFRL------V---GHEGSIFRIEWSSCGSKLVSVS 275 (821)
Q Consensus 247 ~~--~~~~------~---~h~~~I~~l~~s~~~~~l~s~s 275 (821)
.. ..++ . +|...|.+|.|.+++.+|++-.
T Consensus 193 ~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 193 EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 21 3334 2 4789999999999998887644
No 207
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.96 E-value=1.9e-07 Score=108.41 Aligned_cols=198 Identities=10% Similarity=0.008 Sum_probs=124.4
Q ss_pred CCCcEEEEEEeecCCCCCEEEEEECC-----CcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCC--
Q 003423 131 LSHWVFDVCFLKVCNGNRSLAIGCSD-----NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN-- 203 (821)
Q Consensus 131 h~~~I~~~~~~~~~~~~~~l~t~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg-- 203 (821)
|...+..++||| ||++||.++.+ ..|++||+.+++.+........ ..++.+ ++| ..|+.+..++
T Consensus 161 ~~~~~~~~~~SP---DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~--~~~~~w---spD-~~l~~~~~~~~~ 231 (741)
T 1yr2_A 161 GATALDAWAASD---DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVK--FSGLAW---LGN-DALLYSRFAEPK 231 (741)
T ss_dssp --EEEEEEEECT---TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEE--SCCCEE---STT-SEEEEEECCCC-
T ss_pred CCEEEEeEEECC---CCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCce--eccEEE---ECC-CEEEEEEecCcc
Confidence 444788999999 99999877653 3599999999987543111110 012222 477 7777766554
Q ss_pred ------------EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEE
Q 003423 204 ------------EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (821)
Q Consensus 204 ------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l 271 (821)
.|++|++.+. ......+.....|...+.++.|+|||++|
T Consensus 232 ~~~~~~~~~~~~~v~~~~lgt~-----------------------------~~~~~lv~~~~~~~~~~~~~~~SpDG~~l 282 (741)
T 1yr2_A 232 EGQAFQALNYNQTVWLHRLGTP-----------------------------QSADQPVFATPELPKRGHGASVSSDGRWV 282 (741)
T ss_dssp -------CCCCCEEEEEETTSC-----------------------------GGGCEEEECCTTCTTCEEEEEECTTSCEE
T ss_pred cccccccCCCCCEEEEEECCCC-----------------------------chhCEEEeccCCCCeEEEEEEECCCCCEE
Confidence 3778877511 00112333333344568999999999998
Q ss_pred EEEeCCC-----eEEEEecccC--c-ccCCCCceeeeceEEeccceeEEEEEEc-CCEEEEEeC----CCeEEEEcCCC-
Q 003423 272 VSVSDDR-----SARIWEVRAE--Y-WKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGE----DCTCRVWGSDG- 337 (821)
Q Consensus 272 ~s~s~Dg-----~i~iwd~~~~--~-~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~l~s~~~----dg~i~iwd~~~- 337 (821)
+..+.++ .|.+||+.++ . . ..+..+...+....+. ++.|+..+. ++.|.+|++++
T Consensus 283 ~~~~~~~~~~~~~l~~~d~~~~~~~~~-----------~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 283 VITSSEGTDPVNTVHVARVTNGKIGPV-----------TALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EEEEECTTCSCCEEEEEEEETTEECCC-----------EEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred EEEEEccCCCcceEEEEECCCCCCccc-----------EEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 8777544 8999999876 3 2 2444444333333333 677776665 34599999854
Q ss_pred -ceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 338 -KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 338 -~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
.....+..+....+..+++. ++.++++...|+..++|.++
T Consensus 352 ~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 352 TPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp SCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred ccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 23344433433346677777 56788888999988888663
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.95 E-value=2.2e-07 Score=98.92 Aligned_cols=252 Identities=10% Similarity=0.043 Sum_probs=150.7
Q ss_pred CcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCC--EEEEEEc
Q 003423 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN--EIIVWKV 210 (821)
Q Consensus 133 ~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg--~i~vwd~ 210 (821)
.....++|+| +++++++...++.|++||..++............. +++ ++++..|+++..++ .|.+++.
T Consensus 131 ~~P~~la~d~---~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~---ia~---~~~g~~l~~~d~~~~~~I~~~d~ 201 (409)
T 3hrp_A 131 KYMWGIAAVG---NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK---PAV---TKDKQRVYSIGWEGTHTVYVYMK 201 (409)
T ss_dssp CCEEEEEECS---TTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB---CEE---CTTSSEEEEEBSSTTCEEEEEEG
T ss_pred CCceEEEEeC---CCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc---eeE---ecCCCcEEEEecCCCceEEEEEc
Confidence 4678999998 89877777777899999998877654443322211 333 47788888887765 7888887
Q ss_pred ccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEec-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCc
Q 003423 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG-HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (821)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~ 289 (821)
... .....+..+.. +...+.+++++|++..|+.+..++.|+.||..++.
T Consensus 202 ~~~------------------------------~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~ 251 (409)
T 3hrp_A 202 ASG------------------------------WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE 251 (409)
T ss_dssp GGT------------------------------TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC
T ss_pred CCC------------------------------ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC
Confidence 611 01111111122 45667889999955555557778999999988654
Q ss_pred ccCCCCceeeeceEEeccceeE-E-EEEEcC--C-EEEEEeCCCeEEEEcCCCceeeEeeccc--------------CCC
Q 003423 290 WKDSDSIEEVGSSVLYGHNARV-W-DCCLTD--S-FIITAGEDCTCRVWGSDGKQLKMIKEHI--------------GRG 350 (821)
Q Consensus 290 ~~~~~~~~~~~~~~~~~h~~~i-~-~v~~~~--~-~l~s~~~dg~i~iwd~~~~~~~~~~~h~--------------~~~ 350 (821)
. ..+......++...- . .++|++ . ++++-..++.|+.|+.+++ +..+.++. -..
T Consensus 252 ~------~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~ 324 (409)
T 3hrp_A 252 V------TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQ 324 (409)
T ss_dssp E------EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSS
T ss_pred E------EEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCC
Confidence 3 111000011222211 2 788874 4 4455567789999999776 33443332 113
Q ss_pred eEEEEEecCCCEEEEEe-CCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeec
Q 003423 351 IWRCLYDSLSSLLVTAG-FDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTS 429 (821)
Q Consensus 351 i~~l~~~~~~~~l~tg~-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~ 429 (821)
...++++++|+++++-. .++.|+.|++....+.++.++.....+. .+ ......-..+..+++++
T Consensus 325 P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~-------------~g--~~~~~~~~~P~giavd~ 389 (409)
T 3hrp_A 325 PNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQI-------------DG--TPLEATFNYPYDICYDG 389 (409)
T ss_dssp EEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCC-------------CB--STTTCCBSSEEEEEECS
T ss_pred CeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcC-------------CC--ChhceEeCCceEEEEcC
Confidence 78999999999777777 7899999996432222222210000000 00 00011123588999999
Q ss_pred CCeEEEEec-CCcEEEE
Q 003423 430 EDTLYIATN-HGYLYHT 445 (821)
Q Consensus 430 ~~~~l~~~~-~g~~~~~ 445 (821)
++.++++-. ++++..+
T Consensus 390 ~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 390 EGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp SSEEEEEESTTCEEEEE
T ss_pred CCCEEEEECCCCeEEEE
Confidence 988877754 3345433
No 209
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.94 E-value=1.2e-07 Score=99.86 Aligned_cols=261 Identities=9% Similarity=-0.026 Sum_probs=162.8
Q ss_pred CeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE----------cCCeEEEEEEeecCCCCCC
Q 003423 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF----------GEKRVKLFELNFELSPNSQ 113 (821)
Q Consensus 44 ~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~----------g~~~v~i~~~~~~~~~~~~ 113 (821)
+.|.++|..+++.+.++..... + ++.++|++ + .++++. +++.|.++|....
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~-P--gia~SpDg-------k---~lyVan~~~~~~~~G~~~~~VsviD~~t~------ 159 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFL-P--HPVAAEDG-------S---FFAQASTVFERIARGKRTDYVEVFDPVTF------ 159 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSS-C--EEEECTTS-------S---CEEEEEEEEEETTEEEEEEEEEEECTTTC------
T ss_pred CeEEEEECCCCEEEEEEECCCC-C--ceEECCCC-------C---EEEEEeccccccccCCCCCEEEEEECCCC------
Confidence 6999999999999999997543 3 89999664 2 344432 3578999987643
Q ss_pred CCCccccccceeeeccC-------CCCcEEEEEEeecCCCCCEEEEEEC--CCcEEEEEccCCceeEEEccCcceeEEEE
Q 003423 114 YQPETCVNLSLVQSLPR-------LSHWVFDVCFLKVCNGNRSLAIGCS--DNSIRVWDISNSSIILEVHSPERCLLYSM 184 (821)
Q Consensus 114 ~~~~~~~~~~~~~~~~~-------h~~~I~~~~~~~~~~~~~~l~t~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~s~ 184 (821)
+.+..+.- .......++|+| +|++|+++.. ++.|.+.|+.+++.+.++..+....++.
T Consensus 160 ---------~vv~~I~v~g~~r~~~g~~P~~~~~sp---DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p- 226 (426)
T 3c75_H 160 ---------LPIADIELPDAPRFLVGTYQWMNALTP---DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFP- 226 (426)
T ss_dssp ---------CEEEEEEETTCCCCCBSCCGGGSEECT---TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEE-
T ss_pred ---------cEEEEEECCCccccccCCCcceEEEcC---CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeecc-
Confidence 23333221 012345689999 9999998864 5889999999999988887544211111
Q ss_pred eeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcE-EEEE
Q 003423 185 KLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSI-FRIE 263 (821)
Q Consensus 185 ~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I-~~l~ 263 (821)
.....+++.+.||.+.+.+...+... ......+.....++ ..+.
T Consensus 227 ------~g~~~~v~~~~dG~~~~V~~~~~~v~-----------------------------~~~~~~~~v~~~p~~~~~~ 271 (426)
T 3c75_H 227 ------ASPTVFYMNCRDGSLARVDFADGETK-----------------------------VTNTEVFHTEDELLINHPA 271 (426)
T ss_dssp ------EETTEEEEEETTSSEEEEECCTTCCE-----------------------------EEECCCCSCTTSCBCSCCE
T ss_pred ------CCCcEEEEEcCCCCEEEEECCCCcEE-----------------------------EEeeeeeccCCCceeeEee
Confidence 12244555666788777776411000 00000011111111 1356
Q ss_pred EcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEe-----c---cceeEEEEEEc--CCEEEEEeC-------
Q 003423 264 WSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY-----G---HNARVWDCCLT--DSFIITAGE------- 326 (821)
Q Consensus 264 ~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~---h~~~i~~v~~~--~~~l~s~~~------- 326 (821)
+.+++..++..+..+.|.+.|...... ..+...... . .......++++ +++++....
T Consensus 272 ~~~dg~~~~~~s~~g~V~ViD~~~~~~------~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gth 345 (426)
T 3c75_H 272 FSLRSGRLVWPTYTGKIFQADLTAEGA------TFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKH 345 (426)
T ss_dssp ECTTTCEEEEEBTTSEEEEEEECSSCE------EECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCT
T ss_pred ecCCCCEEEEEeCCCcEEEEeccCCce------EEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccc
Confidence 788888877777889999999865432 100000000 0 00111124565 355555432
Q ss_pred ---CCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCC-EEEEEe-CCCcEEEEEcCC
Q 003423 327 ---DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAG-FDSAIKVHQFQA 379 (821)
Q Consensus 327 ---dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~-~l~tg~-~dg~I~iwd~~~ 379 (821)
++.|.+.|. +.+.+.++.... ..+.++|+|+++ ++++.. .++.|.++|..+
T Consensus 346 k~~s~~VsVID~~T~kvv~~I~vg~--~P~gia~spDg~~~lyv~n~~s~~VsVID~~t 402 (426)
T 3c75_H 346 KAASRFVVVLNAETGERINKIELGH--EIDSINVSQDAEPLLYALSAGTQTLHIYDAAT 402 (426)
T ss_dssp TSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred cCCCCEEEEEECCCCeEEEEEECCC--CcCeEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence 357999999 788888886544 378999999999 888888 599999999955
No 210
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.92 E-value=8.8e-07 Score=93.66 Aligned_cols=261 Identities=8% Similarity=0.013 Sum_probs=153.7
Q ss_pred cceEEeecCCeEEEEECCCCeeeeEEEeecc--------ccEEe-EEeccccCCCCCCccceeeEEEEEcCCeEEEEEEe
Q 003423 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHG--------IRLHG-ISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELN 105 (821)
Q Consensus 35 ~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~--------~~i~~-i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~ 105 (821)
+.+++++.++.|..+|.++|+.+-+...... ..+.+ .... + ..+++...++.|..+|..
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--------~----~~v~v~~~~g~l~a~d~~ 121 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVS--------G----GHVYIGSEKAQVYALNTS 121 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEE--------T----TEEEEEETTSEEEEEETT
T ss_pred CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEe--------C----CEEEEEcCCCEEEEEECC
Confidence 3455555588999999999999877765321 11211 1111 1 246666778889888876
Q ss_pred ecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeE----
Q 003423 106 FELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLL---- 181 (821)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---- 181 (821)
+++ ................. .+..+++++.++.|..+|..+++.+.+.........
T Consensus 122 tG~---------------~~W~~~~~~~~~~~p~~-----~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~ 181 (376)
T 3q7m_A 122 DGT---------------VAWQTKVAGEALSRPVV-----SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGE 181 (376)
T ss_dssp TCC---------------EEEEEECSSCCCSCCEE-----ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCC
T ss_pred CCC---------------EEEEEeCCCceEcCCEE-----ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCC
Confidence 442 22222221111111111 234677788899999999999998776654322110
Q ss_pred EEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCC--C--
Q 003423 182 YSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE--G-- 257 (821)
Q Consensus 182 ~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~-- 257 (821)
.+.. ..+..++.++.++.|..+|.. +++.+....... +
T Consensus 182 ~~~~-----~~~~~v~~g~~~g~l~~~d~~---------------------------------tG~~~w~~~~~~~~~~~ 223 (376)
T 3q7m_A 182 SAPT-----TAFGAAVVGGDNGRVSAVLME---------------------------------QGQMIWQQRISQATGST 223 (376)
T ss_dssp CCCE-----EETTEEEECCTTTEEEEEETT---------------------------------TCCEEEEEECCC-----
T ss_pred CCcE-----EECCEEEEEcCCCEEEEEECC---------------------------------CCcEEEEEecccCCCCc
Confidence 0111 123467778889999999987 222222222110 0
Q ss_pred ---cEEEEEEcC--CCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEE
Q 003423 258 ---SIFRIEWSS--CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRV 332 (821)
Q Consensus 258 ---~I~~l~~s~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~i 332 (821)
.+..+.-.| .+..++.++.++.+..+|..+++. . ... .......+...+..++.++.++.+..
T Consensus 224 ~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~-----~------w~~-~~~~~~~~~~~~~~l~~~~~~g~l~~ 291 (376)
T 3q7m_A 224 EIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI-----M------WKR-ELGSVNDFIVDGNRIYLVDQNDRVMA 291 (376)
T ss_dssp ------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE-----E------EEE-CCCCEEEEEEETTEEEEEETTCCEEE
T ss_pred ccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE-----E------eec-cCCCCCCceEECCEEEEEcCCCeEEE
Confidence 000000111 245777788899999999988765 2 111 12223455566889999999999999
Q ss_pred EcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 333 wd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
+|. +|+.+..........+...... +..|+.++.+|.|..+|..+
T Consensus 292 ~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d~~t 337 (376)
T 3q7m_A 292 LTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWINVED 337 (376)
T ss_dssp EETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEETTT
T ss_pred EECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEECCC
Confidence 998 7777666542222123333332 56788999999999999854
No 211
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.92 E-value=1.1e-07 Score=110.34 Aligned_cols=247 Identities=9% Similarity=-0.020 Sum_probs=149.7
Q ss_pred eeeEEEEEeccCCCCCCcceEEeecC------CeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEE
Q 003423 18 GEISALCFVHLPSHLSSLPFLLAGSG------SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (821)
Q Consensus 18 ~~Vt~l~~~~~p~~~~~~~~l~~g~~------~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l 91 (821)
..+..++|| || +++|+.+.+ ..|++||+.+|+.+.. .. ....+.++.|+| | + .++
T Consensus 163 ~~~~~~~~S--PD----G~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~-~~~~~~~~~wsp-------D-~---~l~ 223 (741)
T 1yr2_A 163 TALDAWAAS--DD----GRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-EL-KWVKFSGLAWLG-------N-D---ALL 223 (741)
T ss_dssp EEEEEEEEC--TT----SSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EE-EEEESCCCEEST-------T-S---EEE
T ss_pred EEEEeEEEC--CC----CCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cC-CCceeccEEEEC-------C-C---EEE
Confidence 368899999 99 566666442 3699999999987643 11 221234667774 3 2 344
Q ss_pred EEEcCC--------------eEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCC
Q 003423 92 ALFGEK--------------RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN 157 (821)
Q Consensus 92 ~~~g~~--------------~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~ 157 (821)
.+..++ .|.+|++..+.. .-..+.....+...+..+.|+| +|++|+..+.++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~-----------~~~lv~~~~~~~~~~~~~~~Sp---DG~~l~~~~~~~ 289 (741)
T 1yr2_A 224 YSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS-----------ADQPVFATPELPKRGHGASVSS---DGRWVVITSSEG 289 (741)
T ss_dssp EEECCCC--------CCCCCEEEEEETTSCGG-----------GCEEEECCTTCTTCEEEEEECT---TSCEEEEEEECT
T ss_pred EEEecCcccccccccCCCCCEEEEEECCCCch-----------hCEEEeccCCCCeEEEEEEECC---CCCEEEEEEEcc
Confidence 444332 367777653310 0123344445556789999999 999988877543
Q ss_pred -----cEEEEEccCC--ceeEEEccCcceeEEEEeeccCCccCeEEEEEee----CCEEEEEEcccCCcccCCCCCCCcc
Q 003423 158 -----SIRVWDISNS--SIILEVHSPERCLLYSMKLWGDNLEALRIASGTI----YNEIIVWKVDWEHVAPLLNSPEGNH 226 (821)
Q Consensus 158 -----~i~iwd~~~~--~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~~~~~~ 226 (821)
.|.+||+.++ +....+..+.....+.+ ++++..|+..+. ++.|.+||+.+.
T Consensus 290 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-----~~dg~~l~~~s~~~~~~~~l~~~d~~~~------------- 351 (741)
T 1yr2_A 290 TDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-----DGVGDQLWFVSGDGAPLKKIVRVDLSGS------------- 351 (741)
T ss_dssp TCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-----EEETTEEEEEECTTCTTCEEEEEECSSS-------------
T ss_pred CCCcceEEEEECCCCCCcccEEecCCCCceEEEE-----eccCCEEEEEECCCCCCCEEEEEeCCCC-------------
Confidence 8999999887 31455554443333222 256777766654 456999998710
Q ss_pred cCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeccc-CcccCCCCceeeeceEEe
Q 003423 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA-EYWKDSDSIEEVGSSVLY 305 (821)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~ 305 (821)
.......+..+...+..++++ ++.++++...|+..+||.+.. +.. . ..+.
T Consensus 352 ------------------~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~-----~-----~~l~ 402 (741)
T 1yr2_A 352 ------------------TPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKP-----A-----GAVS 402 (741)
T ss_dssp ------------------SCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCE-----E-----EECB
T ss_pred ------------------ccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCc-----e-----eecc
Confidence 012223334555667788887 567888999999988887652 222 1 2232
Q ss_pred c-cceeEEEEEEc--CC-EEEEEe---CCCeEEEEcCCCceeeEee
Q 003423 306 G-HNARVWDCCLT--DS-FIITAG---EDCTCRVWGSDGKQLKMIK 344 (821)
Q Consensus 306 ~-h~~~i~~v~~~--~~-~l~s~~---~dg~i~iwd~~~~~~~~~~ 344 (821)
. +...+..+.++ ++ .+++.+ ..+++.+||+.......++
T Consensus 403 ~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l~ 448 (741)
T 1yr2_A 403 LPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPWE 448 (741)
T ss_dssp CSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEECS
T ss_pred CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence 2 35667888886 23 343333 3478999998543344443
No 212
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.89 E-value=5.4e-06 Score=86.82 Aligned_cols=184 Identities=10% Similarity=-0.094 Sum_probs=114.1
Q ss_pred CCCEEEEEEC--CC---cEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEe----------eCCEEEEEEc
Q 003423 146 GNRSLAIGCS--DN---SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT----------IYNEIIVWKV 210 (821)
Q Consensus 146 ~~~~l~t~~~--d~---~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~----------~dg~i~vwd~ 210 (821)
+++++.++.. .+ .|.++|..+++.+.++...... .+.+ +||+..++++. .++.|.+||.
T Consensus 31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p---~i~~---spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP---NPVA---AHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred CCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC---CeEE---CCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 7777766643 22 8899999999988877654332 3333 58998888875 3678999998
Q ss_pred ccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecC-------CCcEEEEEEcCCCCEEEEEeC--CCeEE
Q 003423 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH-------EGSIFRIEWSSCGSKLVSVSD--DRSAR 281 (821)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~I~~l~~s~~~~~l~s~s~--Dg~i~ 281 (821)
. +.+.+.++.-. ...-..++|+|||++|+.+.. +..|.
T Consensus 105 ~---------------------------------t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~ 151 (373)
T 2mad_H 105 V---------------------------------TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVG 151 (373)
T ss_pred C---------------------------------CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEE
Confidence 7 33333332211 123458999999999988764 57899
Q ss_pred EEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEcCCCceeeEee-----cccCCCeEEEEE
Q 003423 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIK-----EHIGRGIWRCLY 356 (821)
Q Consensus 282 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~h~~~~i~~l~~ 356 (821)
++| .+++. .. .+......+.-....+..+++.+.||.+.+++.+++...... .....-.....+
T Consensus 152 viD-~t~~~-----~~-----~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~ 220 (373)
T 2mad_H 152 LVV-QGGSS-----DD-----QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQ 220 (373)
T ss_pred EEE-CCCCE-----Ee-----EEcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeeccee
Confidence 999 87755 32 201112222111222466778889999999998555443221 111111123456
Q ss_pred ecCCCEEEEEeCCCcEEEEEcCC
Q 003423 357 DSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 357 ~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
.+++..++..+.++.+.+.|+.+
T Consensus 221 ~~~~~~~~~~~~~~~v~vid~~~ 243 (373)
T 2mad_H 221 ANKSGRIVWPVYSGKILQADISA 243 (373)
T ss_pred EecCCEEEEEcCCceEEEEeccC
Confidence 66665555445788899999854
No 213
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.88 E-value=7.3e-07 Score=92.08 Aligned_cols=273 Identities=11% Similarity=0.062 Sum_probs=164.1
Q ss_pred CCCCcceeeccceeeeeeE-----EEEEeccCCCCCCcceEEeec-----------CCeEEEEECCCCeeeeEEEeec--
Q 003423 3 KKDLSEWRLDVGQYLGEIS-----ALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLEAGTLIRPFQVFH-- 64 (821)
Q Consensus 3 ~~~i~~w~~~~~~~~~~Vt-----~l~~~~~p~~~~~~~~l~~g~-----------~~~i~iwd~~t~~~~~~~~~~~-- 64 (821)
++.|.+.|..+.+..+.|. .++++ || +++|.++. ++.|.+||..+++.+.++....
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P~va~s--pD----G~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~ 131 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLPNPVVA--DD----GSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP 131 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSCEEEEC--TT----SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred CCEEEEEECCCCeEEEEEECCCCCcEEEC--CC----CCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc
Confidence 4577888888877443322 59999 99 45544432 5789999999999999998643
Q ss_pred ----cccEEeEEeccccCCCCCCccceeeEEEEE-c-CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEE
Q 003423 65 ----GIRLHGISCNFINCTEGSVSTRVTFEVALF-G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (821)
Q Consensus 65 ----~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~-g-~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~ 138 (821)
+...+++.++|++ + .++++. . ++.|.++|+... +.+.+++-- +. ..
T Consensus 132 r~~~g~~P~~~a~spDG-------k---~lyVan~~~~~~VsVID~~t~---------------~vv~tI~v~-g~--~~ 183 (386)
T 3sjl_D 132 RFLVGTYPWMTSLTPDG-------K---TLLFYQFSPAPAVGVVDLEGK---------------AFKRMLDVP-DC--YH 183 (386)
T ss_dssp CCCBSCCGGGEEECTTS-------S---EEEEEECSSSCEEEEEETTTT---------------EEEEEEECC-SE--EE
T ss_pred ccccCCCCceEEEcCCC-------C---EEEEEEcCCCCeEEEEECCCC---------------cEEEEEECC-Cc--ce
Confidence 2245667888553 3 444443 3 689999998753 344444321 11 12
Q ss_pred EEeecCCCCCEEEEEECCCcEEEEEccC-CceeEEEc---cCcceeEEE-EeeccCCccCeEEEEEeeCCEEEEEEcccC
Q 003423 139 CFLKVCNGNRSLAIGCSDNSIRVWDISN-SSIILEVH---SPERCLLYS-MKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (821)
Q Consensus 139 ~~~~~~~~~~~l~t~~~d~~i~iwd~~~-~~~~~~~~---~~~~~~~~s-~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~ 213 (821)
.+ |. ..+.+++.+.||.+.+.++.+ ++...... ......++. ..|. .+++.+++ .+.+|+|.+.|..+.
T Consensus 184 ~~-P~--g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~--~~dG~~~~-vs~~g~V~v~d~~~~ 257 (386)
T 3sjl_D 184 IF-PT--APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYS--QKAGRLVW-PTYTGKIHQIDLSSG 257 (386)
T ss_dssp EE-EE--ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEE--TTTTEEEE-EBTTSEEEEEECTTS
T ss_pred ee-cC--CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeE--cCCCcEEE-EeCCCEEEEEECCCC
Confidence 23 41 445667778899999999876 55432221 111111111 1111 24665555 445799999998621
Q ss_pred CcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEe---------c-CCCcEEEEEEcCCCCEEEEEeC-------
Q 003423 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV---------G-HEGSIFRIEWSSCGSKLVSVSD------- 276 (821)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-h~~~I~~l~~s~~~~~l~s~s~------- 276 (821)
.. .....+. + ..+....++++|+++.|+....
T Consensus 258 ~~-------------------------------~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~h 306 (386)
T 3sjl_D 258 DA-------------------------------KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRH 306 (386)
T ss_dssp SC-------------------------------EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCT
T ss_pred cc-------------------------------eeecceeccccccccccccCCCcceeeECCCCCeEEEEecccccccc
Confidence 10 0010000 0 1122335777899888766542
Q ss_pred ---CCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CC-EEEEE-eCCCeEEEEcC-CCceeeEeecccC
Q 003423 277 ---DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FIITA-GEDCTCRVWGS-DGKQLKMIKEHIG 348 (821)
Q Consensus 277 ---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~-~l~s~-~~dg~i~iwd~-~~~~~~~~~~h~~ 348 (821)
..+|.+.|+.+.+. ++.+ .. ..+++++.++ ++ +|++. ..+++|.++|. +++.+.++.....
T Consensus 307 k~~~~~V~viD~~t~kv-----~~~i----~v--g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~ 375 (386)
T 3sjl_D 307 KTASRFVVVLDAKTGER-----LAKF----EM--GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH 375 (386)
T ss_dssp TSCEEEEEEEETTTCCE-----EEEE----EE--EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS
T ss_pred CCCCCEEEEEECCCCeE-----EEEE----EC--CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCC
Confidence 25788999988766 3322 22 3478899998 33 56664 56999999999 8888888865433
Q ss_pred CCeEEEEEecC
Q 003423 349 RGIWRCLYDSL 359 (821)
Q Consensus 349 ~~i~~l~~~~~ 359 (821)
-..|.+++|
T Consensus 376 --p~~l~~s~d 384 (386)
T 3sjl_D 376 --GPQVITTAD 384 (386)
T ss_dssp --SCCEEEECC
T ss_pred --CceeEECCc
Confidence 345566654
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.88 E-value=5e-07 Score=96.21 Aligned_cols=236 Identities=11% Similarity=0.009 Sum_probs=144.4
Q ss_pred eeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEc
Q 003423 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (821)
Q Consensus 17 ~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g 95 (821)
......|+++ |+ +.++++.. ++.|++||.+++++...... ....+ +.+++++ ..++++..
T Consensus 130 ~~~P~~la~d--~~----g~lyv~d~~~~~I~~id~~~g~~~~~~~~--~~~~~-ia~~~~g----------~~l~~~d~ 190 (409)
T 3hrp_A 130 FKYMWGIAAV--GN----NTVLAYQRDDPRVRLISVDDNKVTTVHPG--FKGGK-PAVTKDK----------QRVYSIGW 190 (409)
T ss_dssp CCCEEEEEEC--ST----TEEEEEETTTTEEEEEETTTTEEEEEEET--CCBCB-CEECTTS----------SEEEEEBS
T ss_pred cCCceEEEEe--CC----CCEEEEecCCCcEEEEECCCCEEEEeecc--CCCCc-eeEecCC----------CcEEEEec
Confidence 3457889999 88 56666665 58999999998887655543 22344 7777553 23444433
Q ss_pred CC--eEEEEEEeecCCCCCCCCCccccccceeeeccC-CCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEE
Q 003423 96 EK--RVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (821)
Q Consensus 96 ~~--~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~ 172 (821)
++ .|.+++..... ....+..+.. ....+.+++++| ++..|..+..++.|..||..++.....
T Consensus 191 ~~~~~I~~~d~~~~~------------~~~~~g~~~~~~~~~p~~iav~p---~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 191 EGTHTVYVYMKASGW------------APTRIGQLGSTFSGKIGAVALDE---TEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp STTCEEEEEEGGGTT------------CEEEEEECCTTSCSCCCBCEECT---TSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred CCCceEEEEEcCCCc------------eeEEeeeccchhcCCcEEEEEeC---CCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 33 66666654221 0111111222 446678899998 666677677788999999987754222
Q ss_pred ----EccCcceeEE-EEeeccCCc-cCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccce
Q 003423 173 ----VHSPERCLLY-SMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (821)
Q Consensus 173 ----~~~~~~~~~~-s~~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (821)
.........+ .+++ ++ ++.+.++-...+.|+.|+....
T Consensus 256 ~~~~~~g~~~~~P~~~ia~---~p~~g~lyv~d~~~~~I~~~~~~g~--------------------------------- 299 (409)
T 3hrp_A 256 KQLELSGSLGTNPGPYLIY---YFVDSNFYMSDQNLSSVYKITPDGE--------------------------------- 299 (409)
T ss_dssp EECCCCSCCCCSSCCEEEE---ETTTTEEEEEETTTTEEEEECTTCC---------------------------------
T ss_pred ecccccCCCCCCccccEEE---eCCCCEEEEEeCCCCEEEEEecCCC---------------------------------
Confidence 1111111101 3444 35 4667777777889999987611
Q ss_pred eeEEEEecC---------------CCcEEEEEEcCCCCEEEEEe-CCCeEEEEecccCcccCCCCceeeeceEEecc---
Q 003423 247 VNLFRLVGH---------------EGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH--- 307 (821)
Q Consensus 247 ~~~~~~~~h---------------~~~I~~l~~s~~~~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h--- 307 (821)
+..+.++ -....+++++|+|+++++-+ .++.|+.|++.++.. ..+.++
T Consensus 300 --~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-----------~~~~g~~~~ 366 (409)
T 3hrp_A 300 --CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-----------STVAGQVDV 366 (409)
T ss_dssp --EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-----------EEEEECTTC
T ss_pred --EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-----------EEEeCCCCC
Confidence 1111122 24578999999999888888 889999999776644 234333
Q ss_pred ------------ceeEEEEEEcC--CEEEEEeCCCeEEEEcC
Q 003423 308 ------------NARVWDCCLTD--SFIITAGEDCTCRVWGS 335 (821)
Q Consensus 308 ------------~~~i~~v~~~~--~~l~s~~~dg~i~iwd~ 335 (821)
-...+.+++.+ .++++-..++.|+.+++
T Consensus 367 ~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 367 ASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp BSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 23467888873 44455555666766543
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.88 E-value=1.3e-06 Score=88.69 Aligned_cols=210 Identities=10% Similarity=0.033 Sum_probs=130.2
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEc
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 174 (821)
.++.|..|+...+. ...+ .....+.+++++| ++++++ +. ++.|.+||..+++...-..
T Consensus 33 ~~~~i~~~d~~~~~----------------~~~~-~~~~~~~~i~~~~---dG~l~v-~~-~~~l~~~d~~~g~~~~~~~ 90 (297)
T 3g4e_A 33 PAKKVCRWDSFTKQ----------------VQRV-TMDAPVSSVALRQ---SGGYVA-TI-GTKFCALNWKEQSAVVLAT 90 (297)
T ss_dssp TTTEEEEEETTTCC----------------EEEE-ECSSCEEEEEEBT---TSSEEE-EE-TTEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEECCCCc----------------EEEE-eCCCceEEEEECC---CCCEEE-EE-CCeEEEEECCCCcEEEEEe
Confidence 46888888876432 1111 2346799999999 998555 44 5689999998876532222
Q ss_pred cC---cceeEEEEeeccCCccCeEEEEEeeC---------CEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccc
Q 003423 175 SP---ERCLLYSMKLWGDNLEALRIASGTIY---------NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (821)
Q Consensus 175 ~~---~~~~~~s~~~~~~s~~~~~l~sg~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (821)
.. .......+.+ ++++.+.++.... ..-.+|.+..
T Consensus 91 ~~~~~~~~~~~di~~---d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~------------------------------ 137 (297)
T 3g4e_A 91 VDNDKKNNRFNDGKV---DPAGRYFAGTMAEETAPAVLERHQGALYSLFP------------------------------ 137 (297)
T ss_dssp CCTTCSSEEEEEEEE---CTTSCEEEEEEECCSBTTBCCTTCEEEEEECT------------------------------
T ss_pred cCCCCCCCCCCCEEE---CCCCCEEEecCCcccccccccCCCcEEEEEEC------------------------------
Confidence 11 1223445555 4677765544221 2334555440
Q ss_pred ccceeeEEEEecCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEecc--cCcccCCCCceeeeceEEeccceeEEEEEEc--
Q 003423 243 QHTAVNLFRLVGHEGSIFRIEWSSCGSKL-VSVSDDRSARIWEVR--AEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-- 317 (821)
Q Consensus 243 ~~~~~~~~~~~~h~~~I~~l~~s~~~~~l-~s~s~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-- 317 (821)
... ...+..+....++++|+|+++.| ++.+.++.|.+|++. ++.. ........+..+......+++.
T Consensus 138 --~g~-~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~-----~~~~~~~~~~~~~~~p~g~~~d~~ 209 (297)
T 3g4e_A 138 --DHH-VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQI-----SNRRSVYKLEKEEQIPDGMCIDAE 209 (297)
T ss_dssp --TSC-EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCE-----EEEEEEEECCGGGCEEEEEEEBTT
T ss_pred --CCC-EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcc-----cCcEEEEECCCCCCCCCeeEECCC
Confidence 111 11122334557899999999866 556667899999974 3322 1000001223344567888887
Q ss_pred CCEEEEEeCCCeEEEEcCC-CceeeEeecccCCCeEEEEEe-cCCCEEEEEeC
Q 003423 318 DSFIITAGEDCTCRVWGSD-GKQLKMIKEHIGRGIWRCLYD-SLSSLLVTAGF 368 (821)
Q Consensus 318 ~~~l~s~~~dg~i~iwd~~-~~~~~~~~~h~~~~i~~l~~~-~~~~~l~tg~~ 368 (821)
+++.++....+.|..||.+ |+.+..+..+.. .+++++|. |+++.|+..+.
T Consensus 210 G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 210 GKLWVACYNGGRVIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp SCEEEEEETTTEEEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEEEB
T ss_pred CCEEEEEcCCCEEEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEEcC
Confidence 4666666677889999995 898888887765 59999998 88877766554
No 216
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.81 E-value=0.00085 Score=80.26 Aligned_cols=507 Identities=12% Similarity=0.084 Sum_probs=242.0
Q ss_pred CeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccc
Q 003423 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLS 123 (821)
Q Consensus 44 ~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~ 123 (821)
..|++++.+.+..+...+...+..|...+... ..++++.++.+.+++++.+. +.
T Consensus 492 ~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~-------------~~vvva~g~~l~~fel~~~~-------------L~ 545 (1158)
T 3ei3_A 492 ASVRLVSQEPKALVSEWKEPQAKNISVASCNS-------------SQVVVAVGRALYYLQIHPQE-------------LR 545 (1158)
T ss_dssp SCEEEEESSSCCEEEEECCTTCCCCCEEEECS-------------SEEEEEETTEEEEEEEETTE-------------EE
T ss_pred CEEEEEECCCCeEEEEEECCCCCEEEEEEeCC-------------CEEEEEECCEEEEEEeeCCc-------------ee
Confidence 34556665544444444433333344333331 13333346788888876321 22
Q ss_pred eeeeccCCCCcEEEEEEeecCC---CCCEEEEEEC-CCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEE
Q 003423 124 LVQSLPRLSHWVFDVCFLKVCN---GNRSLAIGCS-DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASG 199 (821)
Q Consensus 124 ~~~~~~~h~~~I~~~~~~~~~~---~~~~l~t~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg 199 (821)
..... .-.+.|.|+++.|..+ ..+++|+|.. |++|+|+++.+.+.+....-+......++.+... ....+|..|
T Consensus 546 ~~~~~-~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~-~~~~~L~ig 623 (1158)
T 3ei3_A 546 QISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTF-ESSHYLLCA 623 (1158)
T ss_dssp EEEEE-ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEE-TTEEEEEEE
T ss_pred eeccc-CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEe-CCCcEEEEE
Confidence 22222 2356799999987321 2478999996 9999999998766554322222223333333222 245688899
Q ss_pred eeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCC-EEEEEeCCC
Q 003423 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDR 278 (821)
Q Consensus 200 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~-~l~s~s~Dg 278 (821)
-.||.+.-+.+.... ..+ ... ...+-| ..++.=..+...+. -++.+| ++
T Consensus 624 l~dG~l~~~~~d~~t-----------------g~l----------~d~-r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~r 673 (1158)
T 3ei3_A 624 LGDGALFYFGLNIET-----------------GLL----------SDR-KKVTLG-TQPTVLRTFRSLSTTNVFACS-DR 673 (1158)
T ss_dssp ETTSEEEEEEECTTT-----------------CCE----------EEE-EEEECC-SSCCEEEEEESSSCEEEEEES-SS
T ss_pred eCCCeEEEEEEcCCC-----------------Ccc----------ccc-eeEEcC-CCceEEEEEeeCCceeEEEEC-CC
Confidence 999999877765100 000 000 011122 12333222322332 223333 34
Q ss_pred eEEEEecccCcccCCCCceeeeceEEec-cceeE-EEEEEc----CCEEEEEeCCCeEEEEcCC---CceeeEeecccCC
Q 003423 279 SARIWEVRAEYWKDSDSIEEVGSSVLYG-HNARV-WDCCLT----DSFIITAGEDCTCRVWGSD---GKQLKMIKEHIGR 349 (821)
Q Consensus 279 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~i-~~v~~~----~~~l~s~~~dg~i~iwd~~---~~~~~~~~~h~~~ 349 (821)
...++.-+. +. .+.. .-..+ ....|+ ++-++... ++.+++..++ .-.++++.-. .
T Consensus 674 p~liy~~~~-~l------------~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~--~ 737 (1158)
T 3ei3_A 674 PTVIYSSNH-KL------------VFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLY--E 737 (1158)
T ss_dssp CEEEEESSS-SE------------EEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECS--S
T ss_pred CEEEEEcCC-ce------------EEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCC--C
Confidence 444443221 11 1110 01112 223343 35555444 4568888773 2233333332 2
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEEcCCcC-C-Cc----c-------cC-------CccccccCCCcceEEee--cCC
Q 003423 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFL-P-GS----L-------ES-------HPEAKEFNGRTEIFSIK--IPN 407 (821)
Q Consensus 350 ~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~-~-~~----~-------~~-------~~~~~~~~~~~~~~~~~--~~~ 407 (821)
.+..++++|..+.++.+..+. ..++..+.. . .. . .. ......+........+. .|.
T Consensus 738 Tprri~y~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~ 815 (1158)
T 3ei3_A 738 SPRKICYQEVSQCFGVLSSRI--EVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQH 815 (1158)
T ss_dssp EEEEEEEEGGGTEEEEEEEEE--EEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETT
T ss_pred CceEEEEcCCCCEEEEEEEec--cccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCC
Confidence 588999999888776665432 122221100 0 00 0 00 00000000000111111 121
Q ss_pred cccceeccC-CCCcceEEEE---eecC--CeEEEEe----------cCCcEEEEEecCCCcceeeEeeeccCCcceEEEe
Q 003423 408 FSEQIRLTD-SKSEYVRCLH---LTSE--DTLYIAT----------NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMD 471 (821)
Q Consensus 408 ~~~~~~~~~-~~~~~i~~l~---f~~~--~~~l~~~----------~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~ 471 (821)
....+.... ...+.+.+++ |..+ ..++++| ..|+++.+++. ..+.+.+...+..++++++.
T Consensus 816 t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~---~~kL~lv~~~~v~g~v~al~ 892 (1158)
T 3ei3_A 816 TFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS---DGKLQTVAEKEVKGAVYSMV 892 (1158)
T ss_dssp TCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEE---TTEEEEEEEEEESSCEEEEE
T ss_pred CCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEE---CCEEEEEEEEEcCCcCEEEe
Confidence 111111111 1123344444 3322 3455555 34667766665 23556666666677888876
Q ss_pred ccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEee
Q 003423 472 LLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQ 551 (821)
Q Consensus 472 ~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 551 (821)
... +++++|- ..++++|++...+.. .......+. +.. ......+.+++.|+.-..|.++.
T Consensus 893 ~~~----------g~Lla~i-g~~l~vy~l~~~~~L---~~~~~~~~~----i~~--~~l~~~~~~I~vgD~~~Sv~~~~ 952 (1158)
T 3ei3_A 893 EFN----------GKLLASI-NSTVRLYEWTTEKEL---RTECNHYNN----IMA--LYLKTKGDFILVGDLMRSVLLLA 952 (1158)
T ss_dssp EET----------TEEEEEE-TTEEEEEEECTTSCE---EEEEEECCC----SCE--EEEEEETTEEEEEESSBCEEEEE
T ss_pred eeC----------CEEEEEc-CCEEEEEECCCCceE---EEEeecccc----EEE--EEEeccCCEEEEEEhhheEEEEE
Confidence 533 3444433 368999999764321 111111111 000 01111246788888888787766
Q ss_pred ecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCcccccccccccccccCccccc
Q 003423 552 LCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYF 631 (821)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 631 (821)
.+... ..+...+ ...+...+++++|-.+ ..++.++.+|+|.+...+..... ..+...+.....|
T Consensus 953 y~~~~----------~~L~~~a--~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~~~~~---~~~~~~L~~~~~f 1016 (1158)
T 3ei3_A 953 YKPME----------GNFEEIA--RDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDSAATT---DEERQHLQEVGLF 1016 (1158)
T ss_dssp EETTT----------TEEEEEE--ECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECTTCCS---TTGGGBEEEEEEE
T ss_pred EEcCC----------CeEEEEE--eecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCCCCCC---ccccceeeeEEEE
Confidence 54321 1222222 3455677999999865 47788999999999987642110 1111222222233
Q ss_pred ccccCCcceEEEEEE---ecC------CCceEEEEecCCCeEEEEE
Q 003423 632 KGAHGISTVSTLSVA---KLR------SNQTEIRSTGGDGCICYLE 668 (821)
Q Consensus 632 ~~~h~~~~Vt~i~~~---~~~------~~~~~l~t~g~Dg~i~iw~ 668 (821)
|-.+.||++.-. +.. .....++-++.||.|-+.-
T Consensus 1017 ---hlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A 1017 ---HLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp ---ECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEE
T ss_pred ---eCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEE
Confidence 334578887531 110 0134577777888886654
No 217
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.79 E-value=1.4e-06 Score=90.55 Aligned_cols=270 Identities=10% Similarity=0.002 Sum_probs=144.5
Q ss_pred ccEEeEEeccccCCCCCCccceeeEEEEE---cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEee
Q 003423 66 IRLHGISCNFINCTEGSVSTRVTFEVALF---GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLK 142 (821)
Q Consensus 66 ~~i~~i~~~~~~~~~~~~~~~~~~~l~~~---g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~ 142 (821)
..+.++++++++ .++++. .++.++||.+..+. ...| | .......+|-..+.++++.|
T Consensus 17 ~~p~~va~~~~g-----------~~~v~~~~~~~~~~~l~~~~~g~--~~~~-p------~~~~~~~~~~~~p~gv~~d~ 76 (343)
T 2qe8_A 17 LAPGNITLTPDG-----------RLFLSLHQFYQPEMQVAELTQDG--LIPF-P------PQSGNAIITFDTVLGIKSDG 76 (343)
T ss_dssp SCEEEEEECTTS-----------CEEEEECGGGCCSCSEEEEETTE--EEES-C------CCCSSCCCCCSCEEEEEECS
T ss_pred CCcceEEECCCC-----------CEEEEeCCCCCCceEEEEECCCC--eecC-C------CcccCcccceeEeeEEEEcC
Confidence 368889998653 355553 23337777776111 0000 0 00011234557899999999
Q ss_pred cCCCCCEEEEEEC-----CCcEEEEEccCCceeEEEccCc-----ceeEEEEeeccCCc-cCeEEEEEe---eCCEEEEE
Q 003423 143 VCNGNRSLAIGCS-----DNSIRVWDISNSSIILEVHSPE-----RCLLYSMKLWGDNL-EALRIASGT---IYNEIIVW 208 (821)
Q Consensus 143 ~~~~~~~l~t~~~-----d~~i~iwd~~~~~~~~~~~~~~-----~~~~~s~~~~~~s~-~~~~l~sg~---~dg~i~vw 208 (821)
+++++++-.. ++.|.+||+.+++.+..+..+. ......+.+ ++ ++...++.. .++.|.+|
T Consensus 77 ---~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~v---d~~~g~~yvtd~~~~~~~~i~v~ 150 (343)
T 2qe8_A 77 ---NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAV---DLIHNFVYISDPAPDDKAALIRV 150 (343)
T ss_dssp ---SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEE---ETTTTEEEEEECCSGGGCEEEEE
T ss_pred ---CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEE---ecCCCEEEEEcCccCCCCeEEEE
Confidence 8876665433 5789999999998776665321 112233444 23 344555555 68899999
Q ss_pred EcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE------ecCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 003423 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL------VGHEGSIFRIEWSSCGSKLVSVSDDRSARI 282 (821)
Q Consensus 209 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~i 282 (821)
|+.+.+.....+...... +....+ .. .+..+... ......+++|+|+|+++.|+.+..++. ++
T Consensus 151 d~~~g~~~r~~~~~~~~~--~~~~~~---~~-----~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l 219 (343)
T 2qe8_A 151 DLQTGLAARVLQGYPGIA--PEDIDL---VI-----DGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SM 219 (343)
T ss_dssp ETTTCCEEEECTTCTTTS--CCSCCC---EE-----TTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EE
T ss_pred ECCCCCEEEEecCCCccc--ccccce---eE-----CCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eE
Confidence 987433211111000000 000000 00 00000000 001234789999999998888877663 55
Q ss_pred EecccCcccC-CCC-ceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEe
Q 003423 283 WEVRAEYWKD-SDS-IEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYD 357 (821)
Q Consensus 283 wd~~~~~~~~-~~~-~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~ 357 (821)
|.+....... ... .+........++......+++. +..+++...++.|.+||. +|+..............++++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~ 299 (343)
T 2qe8_A 220 YRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFG 299 (343)
T ss_dssp EEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEEC
T ss_pred EEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEEC
Confidence 5554311000 000 0000001223444455667887 577778788899999999 7764433332212258899999
Q ss_pred cCCCEEEEEeCCCcE
Q 003423 358 SLSSLLVTAGFDSAI 372 (821)
Q Consensus 358 ~~~~~l~tg~~dg~I 372 (821)
+++.++++....+.+
T Consensus 300 ~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 300 SDGYLYFDCNQLHHS 314 (343)
T ss_dssp TTSCEEEEECCGGGS
T ss_pred CCCcEEEEeCccccc
Confidence 998888777655443
No 218
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.78 E-value=4.9e-06 Score=84.50 Aligned_cols=220 Identities=8% Similarity=0.046 Sum_probs=136.6
Q ss_pred EEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeE
Q 003423 21 SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRV 99 (821)
Q Consensus 21 t~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v 99 (821)
.+..|+ |+ .+.++++.. ++.|..||..+++. ..+.. ...+.++.+++++ .++++. ++.|
T Consensus 16 Egp~w~--~~---~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~--~~~~~~i~~~~dG-----------~l~v~~-~~~l 75 (297)
T 3g4e_A 16 ESPVWE--EV---SNSLLFVDIPAKKVCRWDSFTKQV-QRVTM--DAPVSSVALRQSG-----------GYVATI-GTKF 75 (297)
T ss_dssp EEEEEE--TT---TTEEEEEETTTTEEEEEETTTCCE-EEEEC--SSCEEEEEEBTTS-----------SEEEEE-TTEE
T ss_pred cCCeEE--CC---CCEEEEEECCCCEEEEEECCCCcE-EEEeC--CCceEEEEECCCC-----------CEEEEE-CCeE
Confidence 467788 76 355666655 78999999998765 33332 3468899998663 344444 6778
Q ss_pred EEEEEeecCCCCCCCCCccccccceeeeccC--CCCcEEEEEEeecCCCCCEEEEEECC---------CcEEEEEccCCc
Q 003423 100 KLFELNFELSPNSQYQPETCVNLSLVQSLPR--LSHWVFDVCFLKVCNGNRSLAIGCSD---------NSIRVWDISNSS 168 (821)
Q Consensus 100 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~I~~~~~~~~~~~~~~l~t~~~d---------~~i~iwd~~~~~ 168 (821)
.+|+.+.+. ++.+..... ....+.++++.| +|+++++...+ ..-.||.+....
T Consensus 76 ~~~d~~~g~-------------~~~~~~~~~~~~~~~~~di~~d~---dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g 139 (297)
T 3g4e_A 76 CALNWKEQS-------------AVVLATVDNDKKNNRFNDGKVDP---AGRYFAGTMAEETAPAVLERHQGALYSLFPDH 139 (297)
T ss_dssp EEEETTTTE-------------EEEEEECCTTCSSEEEEEEEECT---TSCEEEEEEECCSBTTBCCTTCEEEEEECTTS
T ss_pred EEEECCCCc-------------EEEEEecCCCCCCCCCCCEEECC---CCCEEEecCCcccccccccCCCcEEEEEECCC
Confidence 888865332 222222211 234689999999 99876654322 334666665332
Q ss_pred eeEEEccCcceeEEEEeeccCCccCeEE-EEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccc-cce
Q 003423 169 IILEVHSPERCLLYSMKLWGDNLEALRI-ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ-HTA 246 (821)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~s~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 246 (821)
.+..+.... .....+++ ++++..+ ++.+.++.|.+|++.... +. ...
T Consensus 140 ~~~~~~~~~-~~pngi~~---spdg~~lyv~~~~~~~i~~~~~d~~~---------------------------G~~~~~ 188 (297)
T 3g4e_A 140 HVKKYFDQV-DISNGLDW---SLDHKIFYYIDSLSYSVDAFDYDLQT---------------------------GQISNR 188 (297)
T ss_dssp CEEEEEEEE-SBEEEEEE---CTTSCEEEEEEGGGTEEEEEEECTTT---------------------------CCEEEE
T ss_pred CEEEEeecc-ccccceEE---cCCCCEEEEecCCCCcEEEEeccCCC---------------------------CcccCc
Confidence 222221111 11234444 5777655 556678999999974000 00 012
Q ss_pred eeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc
Q 003423 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT 317 (821)
Q Consensus 247 ~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~ 317 (821)
+.+..+..+.+...++++.++|++.++...++.|..||..+++. . ..+..+...+++++|.
T Consensus 189 ~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~-----~-----~~i~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 189 RSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKR-----L-----QTVKLPVDKTTSCCFG 249 (297)
T ss_dssp EEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCE-----E-----EEEECSSSBEEEEEEE
T ss_pred EEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceE-----E-----EEEECCCCCceEEEEe
Confidence 33344445567789999999999888888889999999987654 3 3445556779999997
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.78 E-value=1e-05 Score=83.40 Aligned_cols=208 Identities=8% Similarity=-0.054 Sum_probs=126.5
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEc
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 174 (821)
.++.|..|+...+. ...+. ....+.+++++| +++++++. . +.|.+||..+++...-..
T Consensus 69 ~~~~i~~~d~~~~~----------------~~~~~-~~~~v~~i~~~~---dg~l~v~~-~-~gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 69 LERELHELHLASGR----------------KTVHA-LPFMGSALAKIS---DSKQLIAS-D-DGLFLRDTATGVLTLHAE 126 (326)
T ss_dssp GGTEEEEEETTTTE----------------EEEEE-CSSCEEEEEEEE---TTEEEEEE-T-TEEEEEETTTCCEEEEEC
T ss_pred CCCEEEEEECCCCc----------------EEEEE-CCCcceEEEEeC---CCeEEEEE-C-CCEEEEECCCCcEEEEee
Confidence 46788888765321 11121 245799999999 88877654 4 459999988877533222
Q ss_pred cC---cceeEEEEeeccCCccCeEEEEEeeC------CEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccc
Q 003423 175 SP---ERCLLYSMKLWGDNLEALRIASGTIY------NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (821)
Q Consensus 175 ~~---~~~~~~s~~~~~~s~~~~~l~sg~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (821)
.. ....+..+.+ ++++.+.++...+ +.|..++ . . +
T Consensus 127 ~~~~~~~~~~~~i~~---d~~G~l~v~~~~~~~~~~~~~l~~~~-~-g-------------------------------~ 170 (326)
T 2ghs_A 127 LESDLPGNRSNDGRM---HPSGALWIGTMGRKAETGAGSIYHVA-K-G-------------------------------K 170 (326)
T ss_dssp SSTTCTTEEEEEEEE---CTTSCEEEEEEETTCCTTCEEEEEEE-T-T-------------------------------E
T ss_pred CCCCCCCCCCCCEEE---CCCCCEEEEeCCCcCCCCceEEEEEe-C-C-------------------------------c
Confidence 11 1223555555 4677765544321 3444444 3 0 1
Q ss_pred eeeEEEEecCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEecc--cC-cccCCCCceeeeceEEeccceeEEEEEEc--CC
Q 003423 246 AVNLFRLVGHEGSIFRIEWSSCGSKLV-SVSDDRSARIWEVR--AE-YWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS 319 (821)
Q Consensus 246 ~~~~~~~~~h~~~I~~l~~s~~~~~l~-s~s~Dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~ 319 (821)
.. .+..+.....+++|+|+++.|+ +.+.++.|.+||+. ++ ... ..+.+ ..+......+..+++. +.
T Consensus 171 ~~---~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~---~~~~~--~~~~~~~~~p~gi~~d~~G~ 242 (326)
T 2ghs_A 171 VT---KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG---KAEVF--IDSTGIKGGMDGSVCDAEGH 242 (326)
T ss_dssp EE---EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS---CCEEE--EECTTSSSEEEEEEECTTSC
T ss_pred EE---EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc---CceEE--EECCCCCCCCCeeEECCCCC
Confidence 11 1222334578999999998764 44567899999986 43 220 00111 1122234456778887 45
Q ss_pred EEEEEeCCCeEEEEcCCCceeeEeecccCCCeEEEEEe-cCCCEEEEEeCC
Q 003423 320 FIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYD-SLSSLLVTAGFD 369 (821)
Q Consensus 320 ~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~-~~~~~l~tg~~d 369 (821)
+.++...++.|..|+.+++.+..+..+.. .+++++|+ ++++.|+.++..
T Consensus 243 lwva~~~~~~v~~~d~~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 243 IWNARWGEGAVDRYDTDGNHIARYEVPGK-QTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EEEEEETTTEEEEECTTCCEEEEEECSCS-BEEEEEEESTTSCEEEEEEBC
T ss_pred EEEEEeCCCEEEEECCCCCEEEEEECCCC-CcEEEEEecCCCCEEEEEecC
Confidence 55665567899999998888888876665 59999998 888777655543
No 220
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.77 E-value=3.8e-06 Score=88.73 Aligned_cols=261 Identities=7% Similarity=-0.016 Sum_probs=152.0
Q ss_pred cceEEeecCCeEEEEECCCCeeeeEEEeeccccEEe-EEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCC
Q 003423 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHG-ISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (821)
Q Consensus 35 ~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~-i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~ 113 (821)
+.+++.+.++.|..+|.++|+.+.+.+.... +.+ .... + ..+++...++.+..+|...+.
T Consensus 104 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~--~~~~p~~~--------~----~~v~v~~~~g~l~~~d~~tG~----- 164 (376)
T 3q7m_A 104 GHVYIGSEKAQVYALNTSDGTVAWQTKVAGE--ALSRPVVS--------D----GLVLIHTSNGQLQALNEADGA----- 164 (376)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECSSC--CCSCCEEE--------T----TEEEEECTTSEEEEEETTTCC-----
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEEeCCCc--eEcCCEEE--------C----CEEEEEcCCCeEEEEECCCCc-----
Confidence 4455555689999999999999877764322 111 1111 1 245556668888888876442
Q ss_pred CCCccccccceeeeccCCCCcEEEEE--EeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeE---EEEe-e-
Q 003423 114 YQPETCVNLSLVQSLPRLSHWVFDVC--FLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLL---YSMK-L- 186 (821)
Q Consensus 114 ~~~~~~~~~~~~~~~~~h~~~I~~~~--~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~s~~-~- 186 (821)
......... .+.... -.|.. .+..+++++.++.+..+|..+++.+.+......... ..+. .
T Consensus 165 ----------~~W~~~~~~-~~~~~~~~~~~~~-~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 232 (376)
T 3q7m_A 165 ----------VKWTVNLDM-PSLSLRGESAPTT-AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVD 232 (376)
T ss_dssp ----------EEEEEECCC------CCCCCCEE-ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCC
T ss_pred ----------EEEEEeCCC-CceeecCCCCcEE-ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccC
Confidence 222222111 111000 00100 234677788899999999999988766543211000 0000 0
Q ss_pred ccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcC
Q 003423 187 WGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS 266 (821)
Q Consensus 187 ~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~ 266 (821)
......+..++.++.++.+..+|.. +++.+.... ......+..
T Consensus 233 ~~p~~~~~~v~~~~~~g~l~~~d~~---------------------------------tG~~~w~~~--~~~~~~~~~-- 275 (376)
T 3q7m_A 233 TTPVVVNGVVFALAYNGNLTALDLR---------------------------------SGQIMWKRE--LGSVNDFIV-- 275 (376)
T ss_dssp CCCEEETTEEEEECTTSCEEEEETT---------------------------------TCCEEEEEC--CCCEEEEEE--
T ss_pred CCcEEECCEEEEEecCcEEEEEECC---------------------------------CCcEEeecc--CCCCCCceE--
Confidence 0000134567777788999999987 333333322 223344444
Q ss_pred CCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEe-ccceeEEEEEEcCCEEEEEeCCCeEEEEcC-CCceeeEee
Q 003423 267 CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY-GHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIK 344 (821)
Q Consensus 267 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~ 344 (821)
++..++.++.++.+..+|..+++. . .... .....+......+..|+.++.+|.+.++|. +|+.+....
T Consensus 276 ~~~~l~~~~~~g~l~~~d~~tG~~-----~-----w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~ 345 (376)
T 3q7m_A 276 DGNRIYLVDQNDRVMALTIDGGVT-----L-----WTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQK 345 (376)
T ss_dssp ETTEEEEEETTCCEEEEETTTCCE-----E-----EEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEECCCCcE-----E-----EeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 356788888899999999988764 2 1111 111222333445788999999999999998 788777766
Q ss_pred cccCCCeEE-EEEecCCCEEEEEeCCCcEEEEE
Q 003423 345 EHIGRGIWR-CLYDSLSSLLVTAGFDSAIKVHQ 376 (821)
Q Consensus 345 ~h~~~~i~~-l~~~~~~~~l~tg~~dg~I~iwd 376 (821)
.... .+.+ ... .+..|+.++.+|.|..|+
T Consensus 346 ~~~~-~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 346 VDSS-GFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CCTT-CBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred cCCC-cceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 5333 2322 222 256788899999999886
No 221
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=0.0011 Score=77.19 Aligned_cols=517 Identities=9% Similarity=0.046 Sum_probs=256.5
Q ss_pred cceeeccceeeeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEe-------eccccEEeEEeccccCC
Q 003423 7 SEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQV-------FHGIRLHGISCNFINCT 79 (821)
Q Consensus 7 ~~w~~~~~~~~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~-------~~~~~i~~i~~~~~~~~ 79 (821)
+-|..+.+--...|++|.-. ++ .+|-.|...=|..||-.+-+.... .. .....|.+|...+++
T Consensus 8 ~~~~~~~gLs~n~V~~I~qD--~~-----G~lWigT~~GL~ryDG~~f~~~~~-~~~~~~~~~l~~n~I~~i~~d~~g-- 77 (781)
T 3v9f_A 8 QRLGIEQGLSNNYVLSITQD--KQ-----GFLWFATEEGLNKFDGTRFITYYK-EEQSSSVQSITGNELNEVYTDPVQ-- 77 (781)
T ss_dssp EEESGGGTCSCSBEEEEEEC--TT-----SCEEEEESSCEEEECSSSEEEECC-CSSCSSSCCCSCSCEEEEEECSSS--
T ss_pred EECCCCCCCccCEeEEEEEC--CC-----CCEEEccCCcCccccCCceEEEEc-CCCCCccccccccccceEEEcCCC--
Confidence 33555556556779999877 55 355555543488888654222211 10 112347777665432
Q ss_pred CCCCccceee-EEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeec--c---CCCCcEEEEEEeecCCCCCEEEEE
Q 003423 80 EGSVSTRVTF-EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL--P---RLSHWVFDVCFLKVCNGNRSLAIG 153 (821)
Q Consensus 80 ~~~~~~~~~~-~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~h~~~I~~~~~~~~~~~~~~l~t~ 153 (821)
. +-+...++-+..||...+. +...... . -....|.++.... .+...|..+
T Consensus 78 ---------~~lWigt~~~Gl~~~d~~~~~-------------f~~~~~~~~~~~~l~~~~i~~i~~d~--~~~g~lwi~ 133 (781)
T 3v9f_A 78 ---------PVIWIATQRAGLNAYNYETQS-------------FSVYQYNPEDPQSLITNDVTHITSSV--QAGKGLWVC 133 (781)
T ss_dssp ---------SEEEEEESSSCEEEEETTTTE-------------EEEECCCTTCSSSCSCSCEEEEEECS--STTSEEEEE
T ss_pred ---------CEEEEEeCCCCcceECCCCCe-------------EEeeccccCCCCCcccCcceEEEecC--ccCCCEEEE
Confidence 3 4444444468888865321 1111000 0 0123577776532 003556667
Q ss_pred ECCCcEEEEEccCCceeEEEcc-----CcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccC
Q 003423 154 CSDNSIRVWDISNSSIILEVHS-----PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAH 228 (821)
Q Consensus 154 ~~d~~i~iwd~~~~~~~~~~~~-----~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 228 (821)
+.++-|..+|..+++.. .+.. .....+.++.. ..++ .|..|+.++-|..+|.....
T Consensus 134 t~~~gl~~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~---d~~g-~lwigt~~~Gl~~~~~~~~~-------------- 194 (781)
T 3v9f_A 134 TYYRGIEYLDIATGKFT-HYNKSTVPALPSEQTWTATE---AEDG-KLYIGHVEGGLSILSLNDKS-------------- 194 (781)
T ss_dssp ESSSCEEEEETTTTEEE-EESTTTCTTCSCCCEEEEEE---EETT-EEEEEETTTEEEEEETTTTE--------------
T ss_pred ECCCCeeEEECCCCeEE-eeccCcccCCCccceEEEEE---CCCC-CEEEEecCCCeEEEcCCCCc--------------
Confidence 75566888998766543 2321 11123444433 1234 45556666668888876110
Q ss_pred CCCCCcceeeecccccceeeEEE-----EecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceE
Q 003423 229 GSSSDFKCFKLQDQQHTAVNLFR-----LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV 303 (821)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 303 (821)
...... ..-....|.++...+++.+.+.. .+ -+.+||..++.. .......
T Consensus 195 -----------------~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt-~~-Gl~~~d~~~~~~------~~~~~~~ 249 (781)
T 3v9f_A 195 -----------------VKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGT-SK-GLALFNANTETF------TNFHNNP 249 (781)
T ss_dssp -----------------EEEECC--------CCSSEEEEEECTTCCEEEEE-TT-EEEEEETTTTEE------EC-----
T ss_pred -----------------eEeeecCCCCcccCCCCceeEEEEcCCCCEEEEe-CC-cHheECCCCCcE------EEEEcCC
Confidence 000000 00123568999998888776644 44 688899776543 1110000
Q ss_pred ---EeccceeEEEEEEc-CCEEEEEeCCCeEEEEcCCCceeeEeec--------------ccCCCeEEEEEecCCCEEEE
Q 003423 304 ---LYGHNARVWDCCLT-DSFIITAGEDCTCRVWGSDGKQLKMIKE--------------HIGRGIWRCLYDSLSSLLVT 365 (821)
Q Consensus 304 ---~~~h~~~i~~v~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------h~~~~i~~l~~~~~~~~l~t 365 (821)
.......|+++... +..|..|...+-+.+++........+.. -....|.++..+++|. |..
T Consensus 250 ~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWi 328 (781)
T 3v9f_A 250 GNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWI 328 (781)
T ss_dssp ------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEE
T ss_pred CccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEE
Confidence 01123568888886 5677778875668888874433322211 1122589999888776 666
Q ss_pred EeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEE
Q 003423 366 AGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHT 445 (821)
Q Consensus 366 g~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~ 445 (821)
|+.++-|..++........+... +.. . .........|.+++..+++.+.+++..+-+..+
T Consensus 329 gt~~~Gl~~~~~~~~~~~~~~~~-----------------~~~-~--~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~ 388 (781)
T 3v9f_A 329 GTWGGGINFISNAPPTFHTWSYS-----------------PTQ-M--NESSLSNKVVSSVCDDGQGKLWIGTDGGGINVF 388 (781)
T ss_dssp EEBSSCEEEECSSCCSCEEEC---------------------C-C--CSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEE
T ss_pred EecCCeEEEeCCCCCcceeeccC-----------------ccc-c--ccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEE
Confidence 77777788888754322111100 000 0 000011345899999999999999966666643
Q ss_pred EecCCCcceeeEeee--ccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCccce
Q 003423 446 KLCDMDSVNWNKILQ--VSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQ 523 (821)
Q Consensus 446 ~i~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (821)
+ .....+..... ......+.++.... ...+.+|+.++.+..++..++... ...........
T Consensus 389 ~---~~~~~~~~~~~~~~~~~~~v~~i~~d~---------~g~lWigt~~~Gl~~~~~~~~~~~-----~~~~~~~~~~~ 451 (781)
T 3v9f_A 389 E---NGKRVAIYNKENRELLSNSVLCSLKDS---------EGNLWFGTYLGNISYYNTRLKKFQ-----IIELEKNELLD 451 (781)
T ss_dssp E---TTEEEEECC-----CCCSBEEEEEECT---------TSCEEEEETTEEEEEECSSSCEEE-----ECCSTTTCCCC
T ss_pred E---CCCCeEEEccCCCCCCCcceEEEEECC---------CCCEEEEeccCCEEEEcCCCCcEE-----EeccCCCCCCe
Confidence 3 22222222110 11123455554422 244556776667777775433211 00000001111
Q ss_pred eeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCc
Q 003423 524 LLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGN 603 (821)
Q Consensus 524 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~ 603 (821)
+.. .+..+++.+.+... . -|..|+......... ..... .......|.++...+++.+.+.....|
T Consensus 452 v~~--i~~d~~g~lwigt~-~-Gl~~~~~~~~~~~~~---------~~~~~-~~~~~~~i~~i~~d~~g~lWigt~~~G- 516 (781)
T 3v9f_A 452 VRV--FYEDKNKKIWIGTH-A-GVFVIDLASKKVIHH---------YDTSN-SQLLENFVRSIAQDSEGRFWIGTFGGG- 516 (781)
T ss_dssp EEE--EEECTTSEEEEEET-T-EEEEEESSSSSCCEE---------ECTTT-SSCSCSCEEEEEECTTCCEEEEESSSC-
T ss_pred EEE--EEECCCCCEEEEEC-C-ceEEEeCCCCeEEec---------ccCcc-cccccceeEEEEEcCCCCEEEEEcCCC-
Confidence 222 12345666665544 4 477788665421000 00000 001135689998888887666544344
Q ss_pred EEEEecCcccccccccccccccCcccccccccCCcceEEEEEEecCCCceEEEEecCCCeEEEEEee
Q 003423 604 LVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYD 670 (821)
Q Consensus 604 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~t~g~Dg~i~iw~~~ 670 (821)
|..|+..... ........ .-....|.+|... .++...+++. +|.+..|+..
T Consensus 517 l~~~~~~~~~-----------~~~~~~~~-~l~~~~i~~i~~d---~~g~lWi~T~-~Glv~~~d~~ 567 (781)
T 3v9f_A 517 VGIYTPDMQL-----------VRKFNQYE-GFCSNTINQIYRS---SKGQMWLATG-EGLVCFPSAR 567 (781)
T ss_dssp EEEECTTCCE-----------EEEECTTT-TCSCSCEEEEEEC---TTSCEEEEET-TEEEEESCTT
T ss_pred EEEEeCCCCe-----------EEEccCCC-CCCCCeeEEEEEC---CCCCEEEEEC-CCceEEECCC
Confidence 7778754321 10000000 1113457887554 4445455544 7764555543
No 222
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.73 E-value=1.3e-06 Score=100.33 Aligned_cols=249 Identities=14% Similarity=0.081 Sum_probs=142.6
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEe-----ecC-CeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceee
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLA-----GSG-SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~-----g~~-~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~ 89 (821)
+...+..++|| || +++||- |.+ ..|++||+++|+.+... ....+..++.|+ ++ ..
T Consensus 127 ~~~~l~~~~~S--pD----g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~--~~~~k~~~~~Ws-Dg----------~~ 187 (693)
T 3iuj_A 127 GTTALDQLSFS--RD----GRILAYSLSLAGSDWREIHLMDVESKQPLETP--LKDVKFSGISWL-GN----------EG 187 (693)
T ss_dssp SCCEEEEEEEC--TT----SSEEEEEEECSSCCEEEEEEEETTTCSEEEEE--EEEEESCCCEEE-TT----------TE
T ss_pred CcEEEEEEEEC--CC----CCEEEEEEecCCCceEEEEEEECCCCCCCccc--cCCceeccEEEe-CC----------CE
Confidence 34468889999 99 666663 222 58999999999865431 122122456666 53 23
Q ss_pred EEEEEcC-------------CeEEEEEEeecCCCCCCCCCccccccceeeeccC-CCCcEEEEEEeecCCCCCEEEEEEC
Q 003423 90 EVALFGE-------------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-LSHWVFDVCFLKVCNGNRSLAIGCS 155 (821)
Q Consensus 90 ~l~~~g~-------------~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~I~~~~~~~~~~~~~~l~t~~~ 155 (821)
++.+..+ ..|.+|++..... .-..+..... |..++..+.|+| +|++|+....
T Consensus 188 l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~-----------~~~~v~~~~~~~~~~~~~~~~Sp---Dg~~l~~~~~ 253 (693)
T 3iuj_A 188 FFYSSYDKPDGSELSARTDQHKVYFHRLGTAQE-----------DDRLVFGAIPAQHHRYVGATVTE---DDRFLLISAA 253 (693)
T ss_dssp EEEEESSCCC-------CCCCEEEEEETTSCGG-----------GCEEEESCSGGGCCSEEEEEECT---TSCEEEEEEE
T ss_pred EEEEEecCcccccccccCCCcEEEEEECCCCcc-----------cceEEEecCCCCCeEEEEEEEcC---CCCEEEEEEc
Confidence 4444433 3477787764320 0123444455 666788999999 9998865432
Q ss_pred ----CCcEEEEEccCCc-eeEEEccCcceeEEEEeeccCCccCeEEEEEeeC---CEEEEEEcccCCcccCCCCCCCccc
Q 003423 156 ----DNSIRVWDISNSS-IILEVHSPERCLLYSMKLWGDNLEALRIASGTIY---NEIIVWKVDWEHVAPLLNSPEGNHA 227 (821)
Q Consensus 156 ----d~~i~iwd~~~~~-~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~ 227 (821)
++.|.++|+.++. ....+..+.....+.+. ..++.+++....+ +.|..+++.+.
T Consensus 254 ~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~----~~g~~l~~~t~~~~~~~~l~~~d~~~~-------------- 315 (693)
T 3iuj_A 254 NSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVD----NKGSTLYLLTNRDAPNRRLVTVDAANP-------------- 315 (693)
T ss_dssp SSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEE----EETTEEEEEECTTCTTCEEEEEETTSC--------------
T ss_pred cCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEe----ccCCEEEEEECCCCCCCEEEEEeCCCC--------------
Confidence 3589999998764 34455544433222211 1234444444433 67888888711
Q ss_pred CCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeC-CC--eEEEEecccCcccCCCCceeeeceEE
Q 003423 228 HGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DR--SARIWEVRAEYWKDSDSIEEVGSSVL 304 (821)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~-Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~ 304 (821)
.......+..|...+. .|+++++.|+.... |+ .|++|++..+.. + ...
T Consensus 316 -----------------~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~------~----~l~ 366 (693)
T 3iuj_A 316 -----------------GPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRV------R----EVA 366 (693)
T ss_dssp -----------------CGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEE------E----EEC
T ss_pred -----------------CccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCee------E----Eee
Confidence 1111234556666655 88899988766654 44 688888875432 1 111
Q ss_pred eccceeEEEEEEc--CCEEEEEeCC----CeEEEEcCCCceeeEee
Q 003423 305 YGHNARVWDCCLT--DSFIITAGED----CTCRVWGSDGKQLKMIK 344 (821)
Q Consensus 305 ~~h~~~i~~v~~~--~~~l~s~~~d----g~i~iwd~~~~~~~~~~ 344 (821)
......+..+.++ ++.++....+ +++..||+.+.....+.
T Consensus 367 ~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~ 412 (693)
T 3iuj_A 367 LPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR 412 (693)
T ss_dssp CSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred cCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence 2234455566555 3334333333 78889998444344444
No 223
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.72 E-value=1.8e-06 Score=98.22 Aligned_cols=198 Identities=11% Similarity=0.024 Sum_probs=116.6
Q ss_pred EEEEEeecCCCCCEEEEEECCC-------------------cEEEEEccCCceeEEEccCc----------ceeEEEEee
Q 003423 136 FDVCFLKVCNGNRSLAIGCSDN-------------------SIRVWDISNSSIILEVHSPE----------RCLLYSMKL 186 (821)
Q Consensus 136 ~~~~~~~~~~~~~~l~t~~~d~-------------------~i~iwd~~~~~~~~~~~~~~----------~~~~~s~~~ 186 (821)
..+++.| ++..|+.+..++ .|..+|..+|+.+-.++... ..++....
T Consensus 246 ~~~~~d~---~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~- 321 (677)
T 1kb0_A 246 DSMTFDA---ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIK- 321 (677)
T ss_dssp SCEEEET---TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEE-
T ss_pred cceeEcC---CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecc-
Confidence 3577888 888888876653 59999999999887765321 12222221
Q ss_pred ccCCccC---eEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEE------------E
Q 003423 187 WGDNLEA---LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF------------R 251 (821)
Q Consensus 187 ~~~s~~~---~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 251 (821)
.++ ..++.++.+|.++++|..+++........... ....++ ....++. .
T Consensus 322 ----~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~-------~~~~~d-----~~g~~~~~~~~~~~~~~~~~ 385 (677)
T 1kb0_A 322 ----IAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVN-------WASGYD-----KHGKPIGIAAARDGSKPQDA 385 (677)
T ss_dssp ----ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS-------SEEEEC-----TTSCEEECGGGGCTTSCEEC
T ss_pred ----cCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccC-------cccccC-----CCCceeeccccCcCCCccEE
Confidence 245 68899999999999999854432110000000 000000 0000000 0
Q ss_pred Ee---cCCCcEEEEEEcCCCCEEEEEeC-------------------------------------------CCeEEEEec
Q 003423 252 LV---GHEGSIFRIEWSSCGSKLVSVSD-------------------------------------------DRSARIWEV 285 (821)
Q Consensus 252 ~~---~h~~~I~~l~~s~~~~~l~s~s~-------------------------------------------Dg~i~iwd~ 285 (821)
.. |.... ..++++|++.+++.... .+.|..||+
T Consensus 386 ~P~~~G~~~w-~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~ 464 (677)
T 1kb0_A 386 VPGPYGAHNW-HPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDP 464 (677)
T ss_dssp SSCTTCSSCS-SCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEET
T ss_pred CcCcccccCC-CCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeC
Confidence 00 11111 25778888877766543 277999999
Q ss_pred ccCcccCCCCceeeeceEEeccceeEEEEEE--cCCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCE
Q 003423 286 RAEYWKDSDSIEEVGSSVLYGHNARVWDCCL--TDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSL 362 (821)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~--~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~ 362 (821)
.+++. . ....+..+++...+ .+..++.++.||.+++||. +|+.+.++....+....-+.+..+|+.
T Consensus 465 ~tG~~-----~------W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~ 533 (677)
T 1kb0_A 465 VAQKA-----A------WSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ 533 (677)
T ss_dssp TTTEE-----E------EEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CCCcE-----E------eecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEE
Confidence 88765 2 22223333444333 3678999999999999999 899999887655422344566678864
Q ss_pred EEE
Q 003423 363 LVT 365 (821)
Q Consensus 363 l~t 365 (821)
++.
T Consensus 534 ~v~ 536 (677)
T 1kb0_A 534 YVS 536 (677)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 224
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.72 E-value=0.0013 Score=76.69 Aligned_cols=452 Identities=11% Similarity=0.050 Sum_probs=235.8
Q ss_pred eeEEEEEeccCCCCCCcc-eEEeecCCeEEEEECCCCeeeeEE-E-----eeccccEEeEEecc--ccCCCCCCccceee
Q 003423 19 EISALCFVHLPSHLSSLP-FLLAGSGSQVLLYDLEAGTLIRPF-Q-----VFHGIRLHGISCNF--INCTEGSVSTRVTF 89 (821)
Q Consensus 19 ~Vt~l~~~~~p~~~~~~~-~l~~g~~~~i~iwd~~t~~~~~~~-~-----~~~~~~i~~i~~~~--~~~~~~~~~~~~~~ 89 (821)
.|++|... ++ +. +-+++.++-|..||..+++..... . ......|.+|.... ++ .
T Consensus 67 ~I~~i~~d--~~----g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g-----------~ 129 (781)
T 3v9f_A 67 ELNEVYTD--PV----QPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGK-----------G 129 (781)
T ss_dssp CEEEEEEC--SS----SSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTS-----------E
T ss_pred ccceEEEc--CC----CCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCC-----------C
Confidence 48888877 65 55 444444547999999887653221 0 00122477776553 31 3
Q ss_pred EEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeee--cc-CCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccC
Q 003423 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQS--LP-RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (821)
Q Consensus 90 ~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~ 166 (821)
+.++..++.+..|+...+. +..... .. .....|.++...+ ++.+ ..|+.++-+..||..+
T Consensus 130 lwi~t~~~gl~~~~~~~~~-------------~~~~~~~~~~~l~~~~i~~i~~d~---~g~l-wigt~~~Gl~~~~~~~ 192 (781)
T 3v9f_A 130 LWVCTYYRGIEYLDIATGK-------------FTHYNKSTVPALPSEQTWTATEAE---DGKL-YIGHVEGGLSILSLND 192 (781)
T ss_dssp EEEEESSSCEEEEETTTTE-------------EEEESTTTCTTCSCCCEEEEEEEE---TTEE-EEEETTTEEEEEETTT
T ss_pred EEEEECCCCeeEEECCCCe-------------EEeeccCcccCCCccceEEEEECC---CCCE-EEEecCCCeEEEcCCC
Confidence 4444424556667654221 111110 00 1134588888776 6654 4466665688899877
Q ss_pred CceeEEEccC------cceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeec
Q 003423 167 SSIILEVHSP------ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240 (821)
Q Consensus 167 ~~~~~~~~~~------~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (821)
++...-...+ ....+.++.. ..++. |..|+.. -+.+||..+..
T Consensus 193 ~~~~~~~~~~~~~~~l~~~~i~~i~~---d~~g~-lwigt~~-Gl~~~d~~~~~-------------------------- 241 (781)
T 3v9f_A 193 KSVKHFVHDPQNPNSLPGNDVRCIYK---DTNGN-IWIGTSK-GLALFNANTET-------------------------- 241 (781)
T ss_dssp TEEEEECC--------CCSSEEEEEE---CTTCC-EEEEETT-EEEEEETTTTE--------------------------
T ss_pred CceEeeecCCCCcccCCCCceeEEEE---cCCCC-EEEEeCC-cHheECCCCCc--------------------------
Confidence 6543211100 1123455443 23444 3444444 68888876211
Q ss_pred ccccceeeEEEE-----ecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeee--ce-------EEec
Q 003423 241 DQQHTAVNLFRL-----VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG--SS-------VLYG 306 (821)
Q Consensus 241 ~~~~~~~~~~~~-----~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~--~~-------~~~~ 306 (821)
....... .-....|.++...++|.+.+ |+..+-|.++|..+... ..... .. ...-
T Consensus 242 -----~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~-----~~~~~~~f~~~~~~~~~~~l 310 (781)
T 3v9f_A 242 -----FTNFHNNPGNIHGALSSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQF-----LLPEQIRFEFIREGDNNYSL 310 (781)
T ss_dssp -----EEC-----------CCCCEEEEEECTTSEEEE-EESSSCEEEEETTCC--------------CEEECBCSSTTSB
T ss_pred -----EEEEEcCCCccccccCceEEEEEECCCCCEEE-EeCCCCeEEECCCCCee-----eeeeccccccccCCCCCCCC
Confidence 1111000 01245699999988876555 55545688888876543 10000 00 0011
Q ss_pred cceeEEEEEEc-CCEEEEEeCCCeEEEEcCCCceeeEeec---------ccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 003423 307 HNARVWDCCLT-DSFIITAGEDCTCRVWGSDGKQLKMIKE---------HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (821)
Q Consensus 307 h~~~i~~v~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd 376 (821)
....|.++... ...|..|..++-|..++........+.. -....|.++..+++++ |..|+.++-|..++
T Consensus 311 ~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~ 389 (781)
T 3v9f_A 311 SNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFE 389 (781)
T ss_dssp SSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEE
T ss_pred CCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEE
Confidence 24568888887 4677788878888899885444444321 1123588998888776 55667666788888
Q ss_pred cCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceee
Q 003423 377 FQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWN 456 (821)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~ 456 (821)
........+. .+. ......|.+++..+++.+.+++..+-++. ++..+.++.
T Consensus 390 ~~~~~~~~~~------------------~~~--------~~~~~~v~~i~~d~~g~lWigt~~~Gl~~---~~~~~~~~~ 440 (781)
T 3v9f_A 390 NGKRVAIYNK------------------ENR--------ELLSNSVLCSLKDSEGNLWFGTYLGNISY---YNTRLKKFQ 440 (781)
T ss_dssp TTEEEEECC-------------------------------CCCSBEEEEEECTTSCEEEEETTEEEEE---ECSSSCEEE
T ss_pred CCCCeEEEcc------------------CCC--------CCCCcceEEEEECCCCCEEEEeccCCEEE---EcCCCCcEE
Confidence 7542111110 000 01234589999988999999987555653 333333433
Q ss_pred Eeeec-cCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeecc---CccceeeeeEEeec
Q 003423 457 KILQV-SEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSA---GIERQLLGTYWCKS 532 (821)
Q Consensus 457 ~~~~~-~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 532 (821)
..... .....+.++.... ...+.+|+. +.+..|+..++... ...... .....+.. .+..
T Consensus 441 ~~~~~~~~~~~v~~i~~d~---------~g~lwigt~-~Gl~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~--i~~d 503 (781)
T 3v9f_A 441 IIELEKNELLDVRVFYEDK---------NKKIWIGTH-AGVFVIDLASKKVI-----HHYDTSNSQLLENFVRS--IAQD 503 (781)
T ss_dssp ECCSTTTCCCCEEEEEECT---------TSEEEEEET-TEEEEEESSSSSCC-----EEECTTTSSCSCSCEEE--EEEC
T ss_pred EeccCCCCCCeEEEEEECC---------CCCEEEEEC-CceEEEeCCCCeEE-----ecccCcccccccceeEE--EEEc
Confidence 33211 1234455554422 245556665 45778886554321 111001 00111222 2345
Q ss_pred CCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEec---ccCceEEEEEeecCCCEEEEEcCCCcEEEEec
Q 003423 533 LGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSS---CFGARIMCLDASFEDEVLFCGDLRGNLVLFPL 609 (821)
Q Consensus 533 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~ 609 (821)
+++.+.+.....| +..|+.... .. ..+.. -....|.++...+++.+.+... +|-|..||.
T Consensus 504 ~~g~lWigt~~~G-l~~~~~~~~--------------~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~ 566 (781)
T 3v9f_A 504 SEGRFWIGTFGGG-VGIYTPDMQ--------------LV-RKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSA 566 (781)
T ss_dssp TTCCEEEEESSSC-EEEECTTCC--------------EE-EEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCT
T ss_pred CCCCEEEEEcCCC-EEEEeCCCC--------------eE-EEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECC
Confidence 5667666554455 666775443 11 11111 1245688998888888666555 676588876
Q ss_pred C
Q 003423 610 L 610 (821)
Q Consensus 610 ~ 610 (821)
.
T Consensus 567 ~ 567 (781)
T 3v9f_A 567 R 567 (781)
T ss_dssp T
T ss_pred C
Confidence 5
No 225
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.69 E-value=2e-06 Score=87.77 Aligned_cols=200 Identities=9% Similarity=-0.014 Sum_probs=120.4
Q ss_pred eeeccCCCCcEEEEEEeecCCCCC-EEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCC
Q 003423 125 VQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (821)
Q Consensus 125 ~~~~~~h~~~I~~~~~~~~~~~~~-~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg 203 (821)
+..+.....+.....|+| +++ ++++...++.|..|+. +++. ..+..+.. ....+.+ ++++.++++...++
T Consensus 37 ~~~l~~~~~~~egp~~~~---~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~-~~~gl~~---d~dG~l~v~~~~~~ 107 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWE---AQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATA-FTNGNAV---DAQQRLVHCEHGRR 107 (305)
T ss_dssp CEEEECCCSSEEEEEEEG---GGTEEEEEETTTTEEEEEET-TSCE-EEEEESCS-CEEEEEE---CTTSCEEEEETTTT
T ss_pred eEEEecCCcCccCCeEeC---CCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCC-ccceeeE---CCCCCEEEEECCCC
Confidence 334445567788999999 888 6667777889999997 4442 23332222 2344544 56788776665668
Q ss_pred EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEE-EEec-CCCcEEEEEEcCCCCEEEE----EeC-
Q 003423 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF-RLVG-HEGSIFRIEWSSCGSKLVS----VSD- 276 (821)
Q Consensus 204 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-h~~~I~~l~~s~~~~~l~s----~s~- 276 (821)
.|.+|+... ....+. ...+ ....+..+++.|+|++.+| +..
T Consensus 108 ~v~~~~~~g--------------------------------~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~ 155 (305)
T 3dr2_A 108 AITRSDADG--------------------------------QAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRK 155 (305)
T ss_dssp EEEEECTTS--------------------------------CEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSC
T ss_pred EEEEECCCC--------------------------------CEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccc
Confidence 899988650 111111 1111 1235678999999998886 332
Q ss_pred ------------CCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCC------CeEEEEcCC
Q 003423 277 ------------DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED------CTCRVWGSD 336 (821)
Q Consensus 277 ------------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~d------g~i~iwd~~ 336 (821)
.+.|..+|..+++. ..+. .......++|+ ++.|+.+... +.|.+|+++
T Consensus 156 ~~~~~~~~~~~~~~~v~~~d~~~g~~-----------~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~ 223 (305)
T 3dr2_A 156 PSQGCPADPELAHHSVYRLPPDGSPL-----------QRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWR 223 (305)
T ss_dssp GGGSCCCCCSSSCEEEEEECSSSCCC-----------EEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEE
T ss_pred cccccccccccCCCeEEEEcCCCCcE-----------EEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEec
Confidence 24566666655543 1222 33456788998 3567766655 789999984
Q ss_pred Cceee---Eeec-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCc
Q 003423 337 GKQLK---MIKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (821)
Q Consensus 337 ~~~~~---~~~~-h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~ 380 (821)
+..+. .+.. ..+ ....++++++|++ .++..+| |.+|+.++.
T Consensus 224 ~~~l~~~~~~~~~~~~-~pdgi~~d~~G~l-wv~~~~g-v~~~~~~g~ 268 (305)
T 3dr2_A 224 DGALHDRRHFASVPDG-LPDGFCVDRGGWL-WSSSGTG-VCVFDSDGQ 268 (305)
T ss_dssp TTEEEEEEEEECCSSS-CCCSEEECTTSCE-EECCSSE-EEEECTTSC
T ss_pred CCCccCCeEEEECCCC-CCCeEEECCCCCE-EEecCCc-EEEECCCCC
Confidence 32121 1111 122 3457889999984 4444454 888887543
No 226
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.67 E-value=1.6e-06 Score=88.50 Aligned_cols=225 Identities=12% Similarity=0.011 Sum_probs=131.8
Q ss_pred cEEeEEeccccCCCCCCccceeeEEEEE-cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCC
Q 003423 67 RLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (821)
Q Consensus 67 ~i~~i~~~~~~~~~~~~~~~~~~~l~~~-g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~ 145 (821)
...+..|++++ ..++.+. .++.|..|+.. + + ...+..+...+..+++++
T Consensus 46 ~~egp~~~~~g----------~~l~~~d~~~~~i~~~~~~-g---------------~-~~~~~~~~~~~~gl~~d~--- 95 (305)
T 3dr2_A 46 WSEGPAWWEAQ----------RTLVWSDLVGRRVLGWRED-G---------------T-VDVLLDATAFTNGNAVDA--- 95 (305)
T ss_dssp SEEEEEEEGGG----------TEEEEEETTTTEEEEEETT-S---------------C-EEEEEESCSCEEEEEECT---
T ss_pred CccCCeEeCCC----------CEEEEEECCCCEEEEEeCC-C---------------C-EEEEeCCCCccceeeECC---
Confidence 35677887653 1233333 46788888652 1 1 123334556789999999
Q ss_pred CCCEEEEEECCCcEEEEEccCCceeEEEccCcc---eeEEEEeeccCCccCeEEEE----Eee-------------CCEE
Q 003423 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPER---CLLYSMKLWGDNLEALRIAS----GTI-------------YNEI 205 (821)
Q Consensus 146 ~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~s~~~~~~s~~~~~l~s----g~~-------------dg~i 205 (821)
+|+++++...++.|.+||.. ++...-...... .....+.+ ++++.+.++ |+. .+.|
T Consensus 96 dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~---d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v 171 (305)
T 3dr2_A 96 QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIV---ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSV 171 (305)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEE---CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEE
T ss_pred CCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEE---CCCCCEEEeCcCCCccccccccccccccCCCeE
Confidence 99866655556789999975 543221111110 01112333 467776665 332 1345
Q ss_pred EEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCC------Ce
Q 003423 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD------RS 279 (821)
Q Consensus 206 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~D------g~ 279 (821)
..+|.. .++... +. +....++++|+|+++.|+.+... +.
T Consensus 172 ~~~d~~---------------------------------~g~~~~-~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~ 216 (305)
T 3dr2_A 172 YRLPPD---------------------------------GSPLQR-MA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVE 216 (305)
T ss_dssp EEECSS---------------------------------SCCCEE-EE-EESSEEEEEECTTSSEEEEEECCC---CCCE
T ss_pred EEEcCC---------------------------------CCcEEE-Ee-cCCCCcceEEcCCCCEEEEEecCCcCCCCCE
Confidence 555543 111111 11 33456889999999987776654 78
Q ss_pred EEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc-CCEEEEEeCCCeEEEEcCCCceeeEeecccCCCeEEEEEec
Q 003423 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDS 358 (821)
Q Consensus 280 i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~ 358 (821)
|.+|++..... .... ............+++. ...|..+..+ .|.+|+.+++.+..+..+. .+.+++|.+
T Consensus 217 i~~~~~~~~~l-----~~~~--~~~~~~~~~pdgi~~d~~G~lwv~~~~-gv~~~~~~g~~~~~~~~~~--~~~~~~f~~ 286 (305)
T 3dr2_A 217 ITAFAWRDGAL-----HDRR--HFASVPDGLPDGFCVDRGGWLWSSSGT-GVCVFDSDGQLLGHIPTPG--TASNCTFDQ 286 (305)
T ss_dssp EEEEEEETTEE-----EEEE--EEECCSSSCCCSEEECTTSCEEECCSS-EEEEECTTSCEEEEEECSS--CCCEEEECT
T ss_pred EEEEEecCCCc-----cCCe--EEEECCCCCCCeEEECCCCCEEEecCC-cEEEECCCCCEEEEEECCC--ceeEEEEeC
Confidence 99999875421 0000 0111112234456676 3345555555 4999999999888887665 378999999
Q ss_pred CCCEEEEEeCCC
Q 003423 359 LSSLLVTAGFDS 370 (821)
Q Consensus 359 ~~~~l~tg~~dg 370 (821)
+++.|+.++.++
T Consensus 287 d~~~L~it~~~~ 298 (305)
T 3dr2_A 287 AQQRLFITGGPC 298 (305)
T ss_dssp TSCEEEEEETTE
T ss_pred CCCEEEEEcCCe
Confidence 998888888764
No 227
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.65 E-value=4.9e-07 Score=93.62 Aligned_cols=309 Identities=11% Similarity=0.066 Sum_probs=175.3
Q ss_pred cceeeccceeeeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccc
Q 003423 7 SEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (821)
Q Consensus 7 ~~w~~~~~~~~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~ 86 (821)
.+|....+. ....+..+. .+ +.+.+++.++.|..|| .+++.+..... ....+.++...+++
T Consensus 11 ~~W~~~~~~--~~~~~~~~d--~~----g~l~v~t~~~~l~~~d-~~g~~~~~~~~-~~~~~~~~~~~~~g--------- 71 (330)
T 3hxj_A 11 IKWEFLIGN--SIDSSPILA--KN----GTIYLGSSNKNLYAIN-TDGSVKWFFKS-GEIIECRPSIGKDG--------- 71 (330)
T ss_dssp -CCTTTSCE--EECCCCEEC--TT----SCEECSSTTTTTEEEC-TTSCEEESSCG-GGEEEECCEETTTT---------
T ss_pred EEEEEeCCC--CcccCceEc--cC----CeEEEEcCCCEEEEEC-CCCcEEEEEec-CCCcccceEEecCC---------
Confidence 456655444 223344444 33 4455555588899999 88887665443 22234555554332
Q ss_pred eeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccC
Q 003423 87 VTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (821)
Q Consensus 87 ~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~ 166 (821)
.+.+...+ +..+|.. + +................+. +..|.+++.++.|..+|..
T Consensus 72 ---~l~v~t~~-l~~~d~~-g---------------~~~~~~~~~~~~~~~~~~~-----~~~l~v~t~~~~l~~~d~~- 125 (330)
T 3hxj_A 72 ---TIYFGSDK-VYAINPD-G---------------TEKWRFDTKKAIVSDFTIF-----EDILYVTSMDGHLYAINTD- 125 (330)
T ss_dssp ---EECCSSCE-EEEECCC-G---------------GGGGGSCC-----CCEEEE-----TTEEEEECTTSEEEEECTT-
T ss_pred ---cEEEecCc-EEEECCC-C---------------cEEEEEECCCCcccCceEE-----CCEEEEEecCCEEEEEcCC-
Confidence 33333334 5555532 1 1111111111112222221 3456778888999999988
Q ss_pred CceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccce
Q 003423 167 SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (821)
Q Consensus 167 ~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (821)
++.......+.. .+.++.. .+++. |..|+.++.|..+|.. +
T Consensus 126 g~~~~~~~~~~~-~~~~~~~---~~~g~-l~vgt~~~~l~~~d~~----------------------------------g 166 (330)
T 3hxj_A 126 GTEKWRFKTKKA-IYATPIV---SEDGT-IYVGSNDNYLYAINPD----------------------------------G 166 (330)
T ss_dssp SCEEEEEECSSC-CCSCCEE---CTTSC-EEEECTTSEEEEECTT----------------------------------S
T ss_pred CCEEEEEcCCCc-eeeeeEE---cCCCE-EEEEcCCCEEEEECCC----------------------------------C
Confidence 766655543322 1222222 23444 6667788999999875 1
Q ss_pred eeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC-CEEEEEe
Q 003423 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-SFIITAG 325 (821)
Q Consensus 247 ~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~l~s~~ 325 (821)
..+..+......+.++...+++...+.. +.|..+| .+++. . .........+.++...+ ..+..++
T Consensus 167 ~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~-----~-----~~~~~~~~~~~~~~~~~~g~l~v~t 232 (330)
T 3hxj_A 167 TEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTE-----K-----WNFYAGYWTVTRPAISEDGTIYVTS 232 (330)
T ss_dssp CEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCE-----E-----EEECCSSCCCSCCEECTTSCEEEEE
T ss_pred CEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcE-----E-----EEEccCCcceeceEECCCCeEEEEc
Confidence 1222333344566777777777755544 7899999 55433 1 22333334567777773 4788888
Q ss_pred CCCeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeec
Q 003423 326 EDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKI 405 (821)
Q Consensus 326 ~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (821)
.++.+..++.+++.+..+..... .+..+.+.+++ .|..++.+|.|..+|.++... .....
T Consensus 233 ~~~gl~~~~~~g~~~~~~~~~~~-~~~~~~~~~~g-~l~v~t~~ggl~~~d~~g~~~------------------~~~~~ 292 (330)
T 3hxj_A 233 LDGHLYAINPDGTEKWRFKTGKR-IESSPVIGNTD-TIYFGSYDGHLYAINPDGTEK------------------WNFET 292 (330)
T ss_dssp TTTEEEEECTTSCEEEEEECSSC-CCSCCEECTTS-CEEEECTTCEEEEECTTSCEE------------------EEEEC
T ss_pred CCCeEEEECCCCCEeEEeeCCCC-ccccceEcCCC-eEEEecCCCCEEEECCCCcEE------------------EEEEc
Confidence 88899999887877776665443 24455665555 577788888898888643211 11111
Q ss_pred CCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEE
Q 003423 406 PNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHT 445 (821)
Q Consensus 406 ~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~ 445 (821)
....+.++...+++.+++++.+|.+...
T Consensus 293 ------------~~~~~~~~~~d~~g~l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 293 ------------GSWIIATPVIDENGTIYFGTRNGKFYAL 320 (330)
T ss_dssp ------------SSCCCSCCEECTTCCEEEECTTSCEEEE
T ss_pred ------------CCccccceEEcCCCEEEEEcCCCeEEEE
Confidence 1223556667788999999999988643
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.62 E-value=3.7e-06 Score=95.84 Aligned_cols=210 Identities=7% Similarity=0.006 Sum_probs=115.6
Q ss_pred EEEEeecCCCCCEEEEEECCC-------------------cEEEEEccCCceeEEEccCcc----------eeEEEEeec
Q 003423 137 DVCFLKVCNGNRSLAIGCSDN-------------------SIRVWDISNSSIILEVHSPER----------CLLYSMKLW 187 (821)
Q Consensus 137 ~~~~~~~~~~~~~l~t~~~d~-------------------~i~iwd~~~~~~~~~~~~~~~----------~~~~s~~~~ 187 (821)
.+++.| +..+++.++.++ .|..||..+|+.+-.++.... .++..+.+
T Consensus 239 ~~~~d~---~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~- 314 (689)
T 1yiq_A 239 SFAYDP---ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI- 314 (689)
T ss_dssp CEEEET---TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-
T ss_pred ceeEcC---CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-
Confidence 577888 888888887775 399999999999877653211 12222221
Q ss_pred cCCccC---eEEEEEeeCCEEEEEEcccCCcccCCCCCCC---cccCCCCCCcceeeecccc---cceeeEEEEecCCC-
Q 003423 188 GDNLEA---LRIASGTIYNEIIVWKVDWEHVAPLLNSPEG---NHAHGSSSDFKCFKLQDQQ---HTAVNLFRLVGHEG- 257 (821)
Q Consensus 188 ~~s~~~---~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~h~~- 257 (821)
++ ..++.++.+|.++++|..+++.......... ...+.... .-+...... ..........+-.+
T Consensus 315 ----~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~--~pi~~~~~~~~~~~~~~~~~~p~~~Gg 388 (689)
T 1yiq_A 315 ----DGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTG--RPILDEENAAYWKNGKRNLVTPAFWGA 388 (689)
T ss_dssp ----TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTT--EEEECHHHHCTTTSSSCEEESSCTTCS
T ss_pred ----CCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCC--CcccchhhccccCCCCeeEeCCCcccc
Confidence 33 3788999999999999985543211000000 00000000 000000000 00000000000000
Q ss_pred -cEEEEEEcCCCCEEEEEeC---------------------------------------------CCeEEEEecccCccc
Q 003423 258 -SIFRIEWSSCGSKLVSVSD---------------------------------------------DRSARIWEVRAEYWK 291 (821)
Q Consensus 258 -~I~~l~~s~~~~~l~s~s~---------------------------------------------Dg~i~iwd~~~~~~~ 291 (821)
.-..++++|+..+++.... +|.|+.||+.+++.
T Consensus 389 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~- 467 (689)
T 1yiq_A 389 HDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQA- 467 (689)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEE-
T ss_pred cCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCe-
Confidence 0123677887776665432 37788999988765
Q ss_pred CCCCceeeeceEEeccceeEEE--EEEcCCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCC-EEEEEe
Q 003423 292 DSDSIEEVGSSVLYGHNARVWD--CCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAG 367 (821)
Q Consensus 292 ~~~~~~~~~~~~~~~h~~~i~~--v~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~-~l~tg~ 367 (821)
. ... .+..+++. +.-.+..++.++.||.++.||. +|+.+.+++...+-...-+.|..+|+ ++++.+
T Consensus 468 ----~-----W~~-~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 468 ----A-----WEV-PYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp ----E-----EEE-EESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred ----E-----eEc-cCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEe
Confidence 2 122 22222332 2223789999999999999999 79999888766542223467777776 444443
No 229
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.61 E-value=3.4e-06 Score=96.91 Aligned_cols=198 Identities=9% Similarity=0.033 Sum_probs=121.1
Q ss_pred CCCCcEEEEEEeecCCCCCEEEEEE-----CCCcEEEEEccCCceeEE-EccC-cceeEEEEeeccCCccCeEEEEEeeC
Q 003423 130 RLSHWVFDVCFLKVCNGNRSLAIGC-----SDNSIRVWDISNSSIILE-VHSP-ERCLLYSMKLWGDNLEALRIASGTIY 202 (821)
Q Consensus 130 ~h~~~I~~~~~~~~~~~~~~l~t~~-----~d~~i~iwd~~~~~~~~~-~~~~-~~~~~~s~~~~~~s~~~~~l~sg~~d 202 (821)
+|...+..++||| ||++||-+. ....|++||+.+++.+.. +... ...+. + + |+..|+.++.+
T Consensus 126 ~~~~~l~~~~~Sp---Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~----W---s-Dg~~l~y~~~~ 194 (693)
T 3iuj_A 126 DGTTALDQLSFSR---DGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGIS----W---L-GNEGFFYSSYD 194 (693)
T ss_dssp TSCCEEEEEEECT---TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCE----E---E-TTTEEEEEESS
T ss_pred CCcEEEEEEEECC---CCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEE----E---e-CCCEEEEEEec
Confidence 4556789999999 999888543 235799999999986543 1111 11222 2 4 66677766665
Q ss_pred C-------------EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEec-CCCcEEEEEEcCCC
Q 003423 203 N-------------EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG-HEGSIFRIEWSSCG 268 (821)
Q Consensus 203 g-------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~I~~l~~s~~~ 268 (821)
. .|++|++.+. ......+..... |...+.++.|+|||
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~lgt~-----------------------------~~~~~~v~~~~~~~~~~~~~~~~SpDg 245 (693)
T 3iuj_A 195 KPDGSELSARTDQHKVYFHRLGTA-----------------------------QEDDRLVFGAIPAQHHRYVGATVTEDD 245 (693)
T ss_dssp CCC-------CCCCEEEEEETTSC-----------------------------GGGCEEEESCSGGGCCSEEEEEECTTS
T ss_pred CcccccccccCCCcEEEEEECCCC-----------------------------cccceEEEecCCCCCeEEEEEEEcCCC
Confidence 3 4888887611 012234444344 56668899999999
Q ss_pred CEEEEE-eC---CCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEE-cCCEE-EEEeCC---CeEEEEcCCC-c
Q 003423 269 SKLVSV-SD---DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCL-TDSFI-ITAGED---CTCRVWGSDG-K 338 (821)
Q Consensus 269 ~~l~s~-s~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~-~~~~l-~s~~~d---g~i~iwd~~~-~ 338 (821)
++|+.. +. +..|.++|+.++.. .. ..+..+......... .++.| +....+ +.|..+++++ .
T Consensus 246 ~~l~~~~~~~~~~~~i~~~d~~~~~~----~~-----~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~ 316 (693)
T 3iuj_A 246 RFLLISAANSTSGNRLYVKDLSQENA----PL-----LTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPG 316 (693)
T ss_dssp CEEEEEEESSSSCCEEEEEETTSTTC----CC-----EEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred CEEEEEEccCCCCcEEEEEECCCCCC----ce-----EEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 987443 32 35899999877531 01 244445444444322 24444 444443 6788899843 2
Q ss_pred e--eeEeecccCCCeEEEEEecCCCEEEEEeC-CC--cEEEEEcCC
Q 003423 339 Q--LKMIKEHIGRGIWRCLYDSLSSLLVTAGF-DS--AIKVHQFQA 379 (821)
Q Consensus 339 ~--~~~~~~h~~~~i~~l~~~~~~~~l~tg~~-dg--~I~iwd~~~ 379 (821)
. ...+..+... +. .++++++.|+.... ++ .|++|++++
T Consensus 317 ~~~~~~l~~~~~~-~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 317 PAHWRDLIPERQQ-VL--TVHSGSGYLFAEYMVDATARVEQFDYEG 359 (693)
T ss_dssp GGGCEEEECCCSS-CE--EEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred ccccEEEecCCCC-EE--EEEEECCEEEEEEEECCeeEEEEEECCC
Confidence 2 3566666663 44 88888887776654 44 577887754
No 230
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.60 E-value=6.9e-06 Score=93.59 Aligned_cols=51 Identities=6% Similarity=-0.008 Sum_probs=40.0
Q ss_pred CCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 327 DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 327 dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
+|.++.||+ +|+.+-++..+.. ...-.+...+.+++.|+.||.++.||.++
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~--~~~g~~~tagglvf~gt~dg~l~a~D~~t 505 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTI--FNGGTLSTAGNLVFEGSADGRVIAYAADT 505 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSS--CCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred ceeEEEEECCCCCeEeEccCCCC--ccCccceECCCEEEEECCCCcEEEEECCC
Confidence 478999999 7888877765543 34445666788999999999999999854
No 231
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.60 E-value=1.1e-05 Score=84.92 Aligned_cols=182 Identities=10% Similarity=-0.044 Sum_probs=119.6
Q ss_pred CCCEEEEEEC-C----CcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEe----------eCCEEEEEEc
Q 003423 146 GNRSLAIGCS-D----NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT----------IYNEIIVWKV 210 (821)
Q Consensus 146 ~~~~l~t~~~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~----------~dg~i~vwd~ 210 (821)
+++.++++.. + +.|.+.|..+++.+.++...... .+.+ ++|+..++++. .++.|.++|.
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P---gia~---SpDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP---HPVA---AEDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC---EEEE---CTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC---ceEE---CCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 6666666544 2 69999999999999888755443 3444 68888887775 4678999999
Q ss_pred ccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecC-------CCcEEEEEEcCCCCEEEEEeC--CCeEE
Q 003423 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH-------EGSIFRIEWSSCGSKLVSVSD--DRSAR 281 (821)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~I~~l~~s~~~~~l~s~s~--Dg~i~ 281 (821)
. +.+.+.++.-. ......++|+|||++|+.+.. +++|.
T Consensus 157 ~---------------------------------t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~Vs 203 (426)
T 3c75_H 157 V---------------------------------TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVG 203 (426)
T ss_dssp T---------------------------------TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEE
T ss_pred C---------------------------------CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEE
Confidence 8 44445444311 123457899999999988764 58899
Q ss_pred EEecccCcccCCCCceeeeceEEeccceeEEEEEEc-CCEEEEEeCCCeEEEEcC-CCceeeE----eecccCCCe-EEE
Q 003423 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKM----IKEHIGRGI-WRC 354 (821)
Q Consensus 282 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~l~s~~~dg~i~iwd~-~~~~~~~----~~~h~~~~i-~~l 354 (821)
+.|+.+.+. ...+ .-- .. ..+... ...+++.+.||.+.+.+. .++.... +..... ++ ..+
T Consensus 204 VID~~t~kv-----v~~I-----~v~-g~-~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~-p~~~~~ 270 (426)
T 3c75_H 204 VVDLEGKTF-----DRML-----DVP-DC-YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDE-LLINHP 270 (426)
T ss_dssp EEETTTTEE-----EEEE-----ECC-SE-EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTS-CBCSCC
T ss_pred EEECCCCeE-----EEEE-----EcC-Cc-eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCC-ceeeEe
Confidence 999999765 3322 111 11 112222 466777888998888887 4443322 111111 11 235
Q ss_pred EEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 355 LYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 355 ~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
.+.+++..++.....+.+.+.|+.+
T Consensus 271 ~~~~dg~~~~~~s~~g~V~ViD~~~ 295 (426)
T 3c75_H 271 AFSLRSGRLVWPTYTGKIFQADLTA 295 (426)
T ss_dssp EECTTTCEEEEEBTTSEEEEEEECS
T ss_pred eecCCCCEEEEEeCCCcEEEEeccC
Confidence 6788888877778889999999854
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.57 E-value=3.7e-08 Score=103.57 Aligned_cols=185 Identities=11% Similarity=-0.074 Sum_probs=100.2
Q ss_pred eEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc
Q 003423 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (821)
Q Consensus 89 ~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~ 168 (821)
.+++...++.|..||...+ +.+..+.. +.+.+..+.+ ++..+++++.|+.|..||..+++
T Consensus 11 ~v~~gs~dg~v~a~d~~tG---------------~~~W~~~~--~~~~s~p~~~---~g~~~v~~s~dg~l~a~d~~tG~ 70 (369)
T 2hz6_A 11 LLFVSTLDGSLHAVSKRTG---------------SIKWTLKE--DPVLQVPTHV---EEPAFLPDPNDGSLYTLGSKNNE 70 (369)
T ss_dssp EEEEEETTSEEEEEETTTC---------------CEEEEEEC--CCSCCCC--------CCEEECTTTCCEEEC-----C
T ss_pred EEEEEcCCCEEEEEECCCC---------------CEEEEecC--CCceecceEc---CCCEEEEeCCCCEEEEEECCCCc
Confidence 4666677899999998754 33344443 3455555555 77778888899999999999988
Q ss_pred eeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceee
Q 003423 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (821)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (821)
.+.....+....+.+. +.-.++..|++|+.++.|+.||.. +++.
T Consensus 71 ~~w~~~~~~~~~~~~s---p~~~~~~~v~~g~~dg~v~a~D~~---------------------------------tG~~ 114 (369)
T 2hz6_A 71 GLTKLPFTIPELVQAS---PCRSSDGILYMGKKQDIWYVIDLL---------------------------------TGEK 114 (369)
T ss_dssp CSEECSCCHHHHHTTC---SCC-----CCCCEEEEEEEEECCC-------------------------------------
T ss_pred eeeeeeccCccccccC---ceEecCCEEEEEeCCCEEEEEECC---------------------------------CCcE
Confidence 7766543322111000 000144578888899999999998 4444
Q ss_pred EEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC-----CEEEE
Q 003423 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-----SFIIT 323 (821)
Q Consensus 249 ~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~-----~~l~s 323 (821)
+..+..+. ...++|++..+++++.|+.|+.||..+++. .- .+..+ ......+.+ ..++.
T Consensus 115 ~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~-----~W-----~~~~~--~~~~~~~~~~~~~~~~v~~ 178 (369)
T 2hz6_A 115 QQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTREL-----RW-----NATYF--DYAASLPEDDVDYKMSHFV 178 (369)
T ss_dssp ----------------------EEEEEEEEEEECCCSSSSSC-----CC-----EEEEE--EECCBCCCCCTTCCCCEEE
T ss_pred EEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCE-----EE-----eEecc--cccCccccCCccccceEEE
Confidence 44444433 234567888999999999999999998765 21 11111 111222333 67888
Q ss_pred EeCCCeEEEEcC-CCceeeEeec
Q 003423 324 AGEDCTCRVWGS-DGKQLKMIKE 345 (821)
Q Consensus 324 ~~~dg~i~iwd~-~~~~~~~~~~ 345 (821)
++.||.+..||. +|+.+-++..
T Consensus 179 ~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 179 SNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp EETSCEEEEECTTTCCEEEEEEC
T ss_pred ECCCCEEEEEECCCCcEEEEecC
Confidence 999999999999 7887766653
No 233
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.57 E-value=4e-05 Score=78.83 Aligned_cols=192 Identities=7% Similarity=-0.018 Sum_probs=114.4
Q ss_pred cEEEEEEeecCCCC-CEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEccc
Q 003423 134 WVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (821)
Q Consensus 134 ~I~~~~~~~~~~~~-~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~ 212 (821)
...+.+|+| ++ .++++...++.|..||..+++.. .+..+. .+.++.+ ++++.++++. .+.|.+||..+
T Consensus 50 ~~egp~~~~---~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~--~v~~i~~---~~dg~l~v~~--~~gl~~~d~~~ 118 (326)
T 2ghs_A 50 LGEGPTFDP---ASGTAWWFNILERELHELHLASGRKT-VHALPF--MGSALAK---ISDSKQLIAS--DDGLFLRDTAT 118 (326)
T ss_dssp BEEEEEEET---TTTEEEEEEGGGTEEEEEETTTTEEE-EEECSS--CEEEEEE---EETTEEEEEE--TTEEEEEETTT
T ss_pred CCcCCeEeC---CCCEEEEEECCCCEEEEEECCCCcEE-EEECCC--cceEEEE---eCCCeEEEEE--CCCEEEEECCC
Confidence 456788988 64 45666667889999999877543 232222 2444444 3677766654 34588998761
Q ss_pred CCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEe-c-CCCcEEEEEEcCCCCEEEEEeCC----CeEEEEecc
Q 003423 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-G-HEGSIFRIEWSSCGSKLVSVSDD----RSARIWEVR 286 (821)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-h~~~I~~l~~s~~~~~l~s~s~D----g~i~iwd~~ 286 (821)
+ ....+.... + ....+.+++++|+|+++++...+ +...||.+.
T Consensus 119 g-------------------------------~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~ 167 (326)
T 2ghs_A 119 G-------------------------------VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA 167 (326)
T ss_dssp C-------------------------------CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred C-------------------------------cEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe
Confidence 1 111111111 1 12458899999999977765432 234555544
Q ss_pred cCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEE-EEeCCCeEEEEcCC---C-ce-----eeEeecccCCCeEEE
Q 003423 287 AEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFII-TAGEDCTCRVWGSD---G-KQ-----LKMIKEHIGRGIWRC 354 (821)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~-s~~~dg~i~iwd~~---~-~~-----~~~~~~h~~~~i~~l 354 (821)
+++. ..+..+......++|+ ++.++ +...++.|.+|+++ | +. ...+..... ....+
T Consensus 168 ~g~~-----------~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~-~p~gi 235 (326)
T 2ghs_A 168 KGKV-----------TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKG-GMDGS 235 (326)
T ss_dssp TTEE-----------EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSS-EEEEE
T ss_pred CCcE-----------EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCC-CCCee
Confidence 3322 1222233346788898 34554 44567899999974 4 21 112222223 46789
Q ss_pred EEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 355 LYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 355 ~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
+++++|++.++...++.|..|+.++
T Consensus 236 ~~d~~G~lwva~~~~~~v~~~d~~g 260 (326)
T 2ghs_A 236 VCDAEGHIWNARWGEGAVDRYDTDG 260 (326)
T ss_dssp EECTTSCEEEEEETTTEEEEECTTC
T ss_pred EECCCCCEEEEEeCCCEEEEECCCC
Confidence 9999998777776678899998744
No 234
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.53 E-value=0.0051 Score=73.60 Aligned_cols=148 Identities=10% Similarity=0.193 Sum_probs=83.7
Q ss_pred CCcEEEEec----------CCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeee
Q 003423 483 IDDWVALGD----------GKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQL 552 (821)
Q Consensus 483 ~~~~l~~g~----------~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 552 (821)
...++++|+ ..|.|++|++.+.+ . .+....+....+..+. .-+|++|++. ..+|++|++
T Consensus 843 ~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k----L--~lv~~~~v~g~v~al~---~~~g~Lla~i--g~~l~vy~l 911 (1158)
T 3ei3_A 843 PNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK----L--QTVAEKEVKGAVYSMV---EFNGKLLASI--NSTVRLYEW 911 (1158)
T ss_dssp CCCEEEEEEEECCTTCSSCCCEEEEEEEEETTE----E--EEEEEEEESSCEEEEE---EETTEEEEEE--TTEEEEEEE
T ss_pred CCEEEEEEeeecCCCCCCCCceEEEEEEEECCE----E--EEEEEEEcCCcCEEEe---eeCCEEEEEc--CCEEEEEEC
Confidence 357888877 45899999987321 1 2211111112122211 1245655554 468999999
Q ss_pred cCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCcccccccccccccccCcccccc
Q 003423 553 CDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFK 632 (821)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (821)
.... .+.... ..+. .|..+.....+++++.|+.-..|.++.+... +..+..+. +
T Consensus 912 ~~~~-------------~L~~~~-~~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~---------~~~L~~~a--~ 965 (1158)
T 3ei3_A 912 TTEK-------------ELRTEC-NHYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPM---------EGNFEEIA--R 965 (1158)
T ss_dssp CTTS-------------CEEEEE-EECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETT---------TTEEEEEE--E
T ss_pred CCCc-------------eEEEEe-eccc-cEEEEEEeccCCEEEEEEhhheEEEEEEEcC---------CCeEEEEE--e
Confidence 7642 111111 1111 1333333335789999999989988765431 01222222 1
Q ss_pred cccCCcceEEEEEEecCCCceEEEEecCCCeEEEEEeecC
Q 003423 633 GAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKD 672 (821)
Q Consensus 633 ~~h~~~~Vt~i~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~ 672 (821)
..+ ...+|++.+. ++ ..++.+.++|.+.+.+.+..
T Consensus 966 D~~-~~~vta~~~l---d~-~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 966 DFN-PNWMSAVEIL---DD-DNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp CCS-CBCEEEEEEE---ET-TEEEEEETTSEEEEEEECTT
T ss_pred ecc-cccEEEEEEE---cc-CcEEEEcCCCcEEEEecCCC
Confidence 233 3468999888 33 57888999999999999663
No 235
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.53 E-value=4.9e-06 Score=86.16 Aligned_cols=253 Identities=8% Similarity=-0.132 Sum_probs=148.4
Q ss_pred eEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE----------cCCeEEEEEEeecCCCCCCC
Q 003423 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF----------GEKRVKLFELNFELSPNSQY 114 (821)
Q Consensus 45 ~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~----------g~~~v~i~~~~~~~~~~~~~ 114 (821)
.|.++|..+++.+.++..... + ++.++|++ + .++++. .++.|.+||+.+.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg-------~---~lyVan~~~~r~~~G~~~~~VsviD~~T~------- 106 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSG-------S---DFALASTSFARSAKGKRTDYVEVFDPVTF------- 106 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-C--EEEECTTS-------S---CEEEEEEEETTTTSSSEEEEEEEECTTTC-------
T ss_pred eEEEEECCCCeEEEEEeCCCC-C--ceEECCCC-------C---EEEEEcccccccccCCCCCEEEEEECCCC-------
Confidence 899999999999999997554 4 69999664 2 344433 2688999998753
Q ss_pred CCccccccceeeeccCC-------CCcEEEEEEeecCCCCCEEEEEEC--CCcEEE--EEccCCceeEEEccCcceeEEE
Q 003423 115 QPETCVNLSLVQSLPRL-------SHWVFDVCFLKVCNGNRSLAIGCS--DNSIRV--WDISNSSIILEVHSPERCLLYS 183 (821)
Q Consensus 115 ~~~~~~~~~~~~~~~~h-------~~~I~~~~~~~~~~~~~~l~t~~~--d~~i~i--wd~~~~~~~~~~~~~~~~~~~s 183 (821)
+.+.++... ......++|+| +|++|+++.. ++.|.+ +|..+ +.++..+. +..
T Consensus 107 --------~vv~~I~v~~~~~~~~g~~P~~ia~Sp---DGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~~~-- 169 (368)
T 1mda_H 107 --------LPIADIELPDAPRFSVGPRVHIIGNCA---SSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-CFH-- 169 (368)
T ss_dssp --------CEEEEEEETTSCSCCBSCCTTSEEECT---TSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-CCC--
T ss_pred --------CEEEEEECCCccccccCCCcceEEEcC---CCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-ceE--
Confidence 344444321 12345699999 9999998864 467888 99877 44453322 111
Q ss_pred EeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEE----EEecCCCcE
Q 003423 184 MKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF----RLVGHEGSI 259 (821)
Q Consensus 184 ~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~h~~~I 259 (821)
+. .......++.+.||.+.+.+....... ..+... .+.--..+.
T Consensus 170 --~~--p~g~~~~~~~~~dg~~~~vd~~~~~~~----------------------------~~~v~~~~t~~i~vg~~P~ 217 (368)
T 1mda_H 170 --IH--PGAAATHYLGSCPASLAASDLAAAPAA----------------------------AGIVGAQCTGAQNCSSQAA 217 (368)
T ss_dssp --CE--EEETTEEECCCCTTSCEEEECCSSCCC----------------------------CEECCCCSCTTSCBCSCCE
T ss_pred --Ec--cCCCeEEEEEcCCCCEEEEECcccccc----------------------------CCeEEEEeeeeeeCCCCcc
Confidence 10 012234445567888888777610000 000000 000112232
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEe-----cccee---EEEEEEc--CCEEEEEeC---
Q 003423 260 FRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY-----GHNAR---VWDCCLT--DSFIITAGE--- 326 (821)
Q Consensus 260 ~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~h~~~---i~~v~~~--~~~l~s~~~--- 326 (821)
. .+++..++-.+. +.|.+.|...... ..+....+. .+... ...++++ ++.++.+..
T Consensus 218 ---~-~~~~~~~~~vs~-~~V~viD~~~~~~------~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~ 286 (368)
T 1mda_H 218 ---Q-ANYPGMLVWAVA-SSILQGDIPAAGA------TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS 286 (368)
T ss_dssp ---E-ETTTTEEEECBS-SCCEEEECCSSCC------EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECS
T ss_pred ---c-cccCCEEEEEcC-CEEEEEECCCCcc------eEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEecccc
Confidence 3 556666555556 8899999865321 100000000 01111 1114565 456665432
Q ss_pred ------CCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCC-EEEEEe-CCCcEEEEEcCC
Q 003423 327 ------DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAG-FDSAIKVHQFQA 379 (821)
Q Consensus 327 ------dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~-~l~tg~-~dg~I~iwd~~~ 379 (821)
++.+.++|+ +++.+.++.... ..+.++++|+++ .+++.. .++.|.++|+.+
T Consensus 287 ~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 287 RSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp SCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred CcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence 235669999 677888876654 378999999997 566666 599999999965
No 236
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.52 E-value=1.8e-06 Score=89.29 Aligned_cols=277 Identities=9% Similarity=-0.047 Sum_probs=160.3
Q ss_pred CCCCcceeeccceee-------eeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEecc
Q 003423 3 KKDLSEWRLDVGQYL-------GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNF 75 (821)
Q Consensus 3 ~~~i~~w~~~~~~~~-------~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~ 75 (821)
++.|..+| .+++.. ..+.++.+. ++ + .|.++..+ |..||. +|+.+..+..... ......+.
T Consensus 39 ~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~--~~----g-~l~v~t~~-l~~~d~-~g~~~~~~~~~~~-~~~~~~~~- 106 (330)
T 3hxj_A 39 NKNLYAIN-TDGSVKWFFKSGEIIECRPSIG--KD----G-TIYFGSDK-VYAINP-DGTEKWRFDTKKA-IVSDFTIF- 106 (330)
T ss_dssp TTTTEEEC-TTSCEEESSCGGGEEEECCEET--TT----T-EECCSSCE-EEEECC-CGGGGGGSCC------CCEEEE-
T ss_pred CCEEEEEC-CCCcEEEEEecCCCcccceEEe--cC----C-cEEEecCc-EEEECC-CCcEEEEEECCCC-cccCceEE-
Confidence 45677777 665521 234566665 55 3 45555555 888986 6665544332111 11111221
Q ss_pred ccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEEC
Q 003423 76 INCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS 155 (821)
Q Consensus 76 ~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~ 155 (821)
. ..+.+...++.+..++.. +. ...........+.++...+ ++. |..++.
T Consensus 107 ~-----------~~l~v~t~~~~l~~~d~~-g~---------------~~~~~~~~~~~~~~~~~~~---~g~-l~vgt~ 155 (330)
T 3hxj_A 107 E-----------DILYVTSMDGHLYAINTD-GT---------------EKWRFKTKKAIYATPIVSE---DGT-IYVGSN 155 (330)
T ss_dssp T-----------TEEEEECTTSEEEEECTT-SC---------------EEEEEECSSCCCSCCEECT---TSC-EEEECT
T ss_pred C-----------CEEEEEecCCEEEEEcCC-CC---------------EEEEEcCCCceeeeeEEcC---CCE-EEEEcC
Confidence 1 134555557888887765 31 2222223334455555554 555 666777
Q ss_pred CCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcc
Q 003423 156 DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (821)
Q Consensus 156 d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (821)
++.|..+|.. ++.+.....+.. .+.++.. ..++. +..++ +.|..+| .
T Consensus 156 ~~~l~~~d~~-g~~~~~~~~~~~-~~~~~~~---d~~g~-l~v~t--~~l~~~d-~------------------------ 202 (330)
T 3hxj_A 156 DNYLYAINPD-GTEKWRFKTNDA-ITSAASI---GKDGT-IYFGS--DKVYAIN-P------------------------ 202 (330)
T ss_dssp TSEEEEECTT-SCEEEEEECSSC-CCSCCEE---CTTCC-EEEES--SSEEEEC-T------------------------
T ss_pred CCEEEEECCC-CCEeEEEecCCC-ceeeeEE---cCCCE-EEEEe--CEEEEEC-C------------------------
Confidence 8999999988 776655543322 1222222 23454 44444 7888888 4
Q ss_pred eeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEE
Q 003423 236 CFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC 315 (821)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~ 315 (821)
.+............+.++...++|... .++.++.+..+|.. +.. . .........+.++.
T Consensus 203 ---------~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t~~~gl~~~~~~-g~~-----~-----~~~~~~~~~~~~~~ 261 (330)
T 3hxj_A 203 ---------DGTEKWNFYAGYWTVTRPAISEDGTIY-VTSLDGHLYAINPD-GTE-----K-----WRFKTGKRIESSPV 261 (330)
T ss_dssp ---------TSCEEEEECCSSCCCSCCEECTTSCEE-EEETTTEEEEECTT-SCE-----E-----EEEECSSCCCSCCE
T ss_pred ---------CCcEEEEEccCCcceeceEECCCCeEE-EEcCCCeEEEECCC-CCE-----e-----EEeeCCCCccccce
Confidence 233344444455668888888887544 45667788888743 322 1 12222222233445
Q ss_pred Ec-CCEEEEEeCCCeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 316 LT-DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 316 ~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
.. +..|+.++.+|.+..+|.+++.+..+..... .+.++..+++++ |..++.+|.+++...+
T Consensus 262 ~~~~g~l~v~t~~ggl~~~d~~g~~~~~~~~~~~-~~~~~~~d~~g~-l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 262 IGNTDTIYFGSYDGHLYAINPDGTEKWNFETGSW-IIATPVIDENGT-IYFGTRNGKFYALFNL 323 (330)
T ss_dssp ECTTSCEEEECTTCEEEEECTTSCEEEEEECSSC-CCSCCEECTTCC-EEEECTTSCEEEEEC-
T ss_pred EcCCCeEEEecCCCCEEEECCCCcEEEEEEcCCc-cccceEEcCCCE-EEEEcCCCeEEEEecc
Confidence 55 6788889999999999988777776665444 467777777766 6668899999988764
No 237
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.52 E-value=2e-05 Score=89.55 Aligned_cols=50 Identities=6% Similarity=-0.002 Sum_probs=39.2
Q ss_pred CeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 328 g~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
|.|..||+ +|+.+-++.... +++...+...+.+++.++.||.+++||..+
T Consensus 457 g~l~A~D~~tG~~~W~~~~~~--~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t 507 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHVS--PWNGGTLTTAGNVVFQGTADGRLVAYHAAT 507 (677)
T ss_dssp EEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred cEEEEEeCCCCcEEeecCCCC--CCcCcceEeCCCEEEEECCCCcEEEEECCC
Confidence 78999999 788777765432 355566777788999999999999999954
No 238
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.50 E-value=5.8e-05 Score=78.42 Aligned_cols=266 Identities=12% Similarity=0.068 Sum_probs=160.3
Q ss_pred CeEEEEECCC-----CeeeeEEEeec-cccEEeEEeccc---cCCC-C--CCccceeeEEEEEc--CCeEEEEEEeecCC
Q 003423 44 SQVLLYDLEA-----GTLIRPFQVFH-GIRLHGISCNFI---NCTE-G--SVSTRVTFEVALFG--EKRVKLFELNFELS 109 (821)
Q Consensus 44 ~~i~iwd~~t-----~~~~~~~~~~~-~~~i~~i~~~~~---~~~~-~--~~~~~~~~~l~~~g--~~~v~i~~~~~~~~ 109 (821)
..|.+.|++. ++.++++.... +...|-+.|+.. .+.. + .+ ...+.+.+ ++.|.++|+....
T Consensus 43 d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~----r~~l~v~~l~s~~I~viD~~t~p- 117 (462)
T 2ece_A 43 DFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIE----RRFLIVPGLRSSRIYIIDTKPNP- 117 (462)
T ss_dssp CEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCC----SCEEEEEBTTTCCEEEEECCSCT-
T ss_pred CeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCcc----CCEEEEccCCCCeEEEEECCCCC-
Confidence 4899999987 89999998755 335777777321 1111 1 22 23444444 6889999986432
Q ss_pred CCCCCCCccccccceeeecc------CCC-CcEEEEEEeecCCCCCEEEEEECC------CcEEEEEccCCceeEEEccC
Q 003423 110 PNSQYQPETCVNLSLVQSLP------RLS-HWVFDVCFLKVCNGNRSLAIGCSD------NSIRVWDISNSSIILEVHSP 176 (821)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~------~h~-~~I~~~~~~~~~~~~~~l~t~~~d------~~i~iwd~~~~~~~~~~~~~ 176 (821)
. +.+..+.+. ... ..-..+..+| +| +++++..+ +.|.+.|..+.+.+.++...
T Consensus 118 -~---------~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p---dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~ 183 (462)
T 2ece_A 118 -R---------EPKIIKVIEPEEVKKVSGYSRLHTVHCGP---DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEID 183 (462)
T ss_dssp -T---------SCEEEEEECHHHHHHHHCEEEEEEEEECS---SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSB
T ss_pred -C---------CceeeeeechhhcccccCCCcccceeECC---Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccC
Confidence 0 123444442 111 2345677778 88 66666555 78999999999999888743
Q ss_pred cce--eEEEEeeccCCccCeEEEEEe-------------------eCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcc
Q 003423 177 ERC--LLYSMKLWGDNLEALRIASGT-------------------IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (821)
Q Consensus 177 ~~~--~~~s~~~~~~s~~~~~l~sg~-------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (821)
... ..|.+.+ +++++.+++.. ....|.+||+.
T Consensus 184 ~~~~~~~Yd~~~---~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~------------------------ 236 (462)
T 2ece_A 184 RGDQYLAYDFWW---NLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR------------------------ 236 (462)
T ss_dssp CTTCCCCCCEEE---ETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT------------------------
T ss_pred CCCccccceEEE---CCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC------------------------
Confidence 222 2332322 47888888774 36899999998
Q ss_pred eeeecccccceeeEEEEecC-C-CcEEEEEE--cCCCCEEEEEe------CCCeEEEEecccCcccCCCCceee--eceE
Q 003423 236 CFKLQDQQHTAVNLFRLVGH-E-GSIFRIEW--SSCGSKLVSVS------DDRSARIWEVRAEYWKDSDSIEEV--GSSV 303 (821)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~h-~-~~I~~l~~--s~~~~~l~s~s------~Dg~i~iwd~~~~~~~~~~~~~~~--~~~~ 303 (821)
..+.+.++.-- . .....|.| +|+++++..++ .+++|.+|....+... ..+.+ ....
T Consensus 237 ---------~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~---~~~vIdi~~~~ 304 (462)
T 2ece_A 237 ---------KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN---AEKVIEIPAEP 304 (462)
T ss_dssp ---------TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE---EEEEEEECCEE
T ss_pred ---------CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCcee---EEEEEeCCCcc
Confidence 34455555432 1 23455666 99999876655 5678988776653220 00000 0000
Q ss_pred Eec-----------cceeEEEEEEc--CCEEEEEe-CCCeEEEEcCC----CceeeEeeccc---------CC----CeE
Q 003423 304 LYG-----------HNARVWDCCLT--DSFIITAG-EDCTCRVWGSD----GKQLKMIKEHI---------GR----GIW 352 (821)
Q Consensus 304 ~~~-----------h~~~i~~v~~~--~~~l~s~~-~dg~i~iwd~~----~~~~~~~~~h~---------~~----~i~ 352 (821)
..+ -......+.++ +++|+.+. ..+.|.++|+. .+.+..+.... +. .-.
T Consensus 305 v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr 384 (462)
T 2ece_A 305 LEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQ 384 (462)
T ss_dssp CCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCC
T ss_pred ccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCC
Confidence 000 01345677787 46665554 57899999982 24444443320 00 246
Q ss_pred EEEEecCCCEEEEEe
Q 003423 353 RCLYDSLSSLLVTAG 367 (821)
Q Consensus 353 ~l~~~~~~~~l~tg~ 367 (821)
.++++|+|++|+++.
T Consensus 385 ~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 385 MLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSSEEEEEC
T ss_pred EEEEcCCCCEEEEEc
Confidence 789999999999887
No 239
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.48 E-value=2.5e-05 Score=76.11 Aligned_cols=194 Identities=10% Similarity=-0.011 Sum_probs=132.1
Q ss_pred eEEEEEeccCCCCCCcceEEe-ec--CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcC
Q 003423 20 ISALCFVHLPSHLSSLPFLLA-GS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (821)
Q Consensus 20 Vt~l~~~~~p~~~~~~~~l~~-g~--~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~ 96 (821)
...|+|+ || +.+.++ |. ++.|.++|+.+++.+.++.........++.+... ..+++.+.+
T Consensus 23 ~~Gl~~~--~d----g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~-----------~lyv~t~~~ 85 (266)
T 2iwa_A 23 TQGLVYA--EN----DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNE-----------KLYQVVWLK 85 (266)
T ss_dssp EEEEEEC--ST----TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETT-----------EEEEEETTC
T ss_pred cccEEEe--CC----CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCC-----------EEEEEEecC
Confidence 4688999 87 344444 33 4899999999999999988655444556776632 356777789
Q ss_pred CeEEEEEEeecCCCCCCCCCccccccceeeeccCC-CCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEcc
Q 003423 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL-SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS 175 (821)
Q Consensus 97 ~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~ 175 (821)
+.+.++|..+ ++.+.+++-- .. ...+++ +++.|+++..++.|.++|..+.+.+..+..
T Consensus 86 ~~v~viD~~t---------------~~v~~~i~~g~~~---g~glt~---Dg~~l~vs~gs~~l~viD~~t~~v~~~I~V 144 (266)
T 2iwa_A 86 NIGFIYDRRT---------------LSNIKNFTHQMKD---GWGLAT---DGKILYGSDGTSILYEIDPHTFKLIKKHNV 144 (266)
T ss_dssp SEEEEEETTT---------------TEEEEEEECCSSS---CCEEEE---CSSSEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred CEEEEEECCC---------------CcEEEEEECCCCC---eEEEEE---CCCEEEEECCCCeEEEEECCCCcEEEEEEE
Confidence 9999999763 3444444321 11 234667 787777777789999999999988887764
Q ss_pred Ccc--e--eEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEE
Q 003423 176 PER--C--LLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (821)
Q Consensus 176 ~~~--~--~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (821)
... . .+..+.+. ++.+.+....++.|.+-|.. +++.+..
T Consensus 145 g~~~~p~~~~nele~~----dg~lyvn~~~~~~V~vID~~---------------------------------tg~V~~~ 187 (266)
T 2iwa_A 145 KYNGHRVIRLNELEYI----NGEVWANIWQTDCIARISAK---------------------------------DGTLLGW 187 (266)
T ss_dssp EETTEECCCEEEEEEE----TTEEEEEETTSSEEEEEETT---------------------------------TCCEEEE
T ss_pred CCCCcccccceeEEEE----CCEEEEecCCCCeEEEEECC---------------------------------CCcEEEE
Confidence 321 1 23445542 45555555567899999988 4444555
Q ss_pred EecC-------------CCcEEEEEEcCCCCE-EEEEeCCCeEEEEecccC
Q 003423 252 LVGH-------------EGSIFRIEWSSCGSK-LVSVSDDRSARIWEVRAE 288 (821)
Q Consensus 252 ~~~h-------------~~~I~~l~~s~~~~~-l~s~s~Dg~i~iwd~~~~ 288 (821)
+.-. ....++|+|+|+++. ++++.....+..-++...
T Consensus 188 I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 188 ILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 4321 136789999999864 567777888888888764
No 240
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.47 E-value=1.3e-05 Score=83.22 Aligned_cols=243 Identities=11% Similarity=0.026 Sum_probs=140.7
Q ss_pred cceeeeccCCCCcEEEEEEeecCCCCCEEEEEEC--CCcEEEEEccCCceeEEEcc------CcceeEEEEeeccCCccC
Q 003423 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS--DNSIRVWDISNSSIILEVHS------PERCLLYSMKLWGDNLEA 193 (821)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~--d~~i~iwd~~~~~~~~~~~~------~~~~~~~s~~~~~~s~~~ 193 (821)
++.+..+. ..+..++++| +|+.+++... ++.++||.+.+++ +..+.. ..-...+.+++ ++++
T Consensus 9 ~~~v~~~~---~~p~~va~~~---~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~---d~~g 78 (343)
T 2qe8_A 9 LEVVAELS---LAPGNITLTP---DGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKS---DGNG 78 (343)
T ss_dssp CEEEEEES---SCEEEEEECT---TSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEE---CSSS
T ss_pred eEEEEEcC---CCcceEEECC---CCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEE---cCCC
Confidence 34444444 6799999999 9998887642 3436777766554 332221 11123566666 5667
Q ss_pred eEEEEEee-----CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEec------CCCcEEEE
Q 003423 194 LRIASGTI-----YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG------HEGSIFRI 262 (821)
Q Consensus 194 ~~l~sg~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~I~~l 262 (821)
.+.++... ++.|.+||+. +.+.+..+.. +...+..+
T Consensus 79 ~L~v~D~g~~~~~~~~i~~~d~~---------------------------------tg~~~~~~~~~~~~~~~~~~~~~v 125 (343)
T 2qe8_A 79 IVWMLDNGNQSKSVPKLVAWDTL---------------------------------NNQLSRVIYLPPPITLSNSFVNDL 125 (343)
T ss_dssp EEEEEECHHHHTSCCEEEEEETT---------------------------------TTEEEEEEECCTTTSCTTCCCCEE
T ss_pred cEEEEcCCCCcCCCCeEEEEECC---------------------------------CCeEEEEEECChhhcccccccceE
Confidence 66665543 5789999987 3333333332 23456899
Q ss_pred EEcCCCC-EEEEEe---CCCeEEEEecccCcccCCC----Cce--eeeceEEec--------------cceeEEEEEEc-
Q 003423 263 EWSSCGS-KLVSVS---DDRSARIWEVRAEYWKDSD----SIE--EVGSSVLYG--------------HNARVWDCCLT- 317 (821)
Q Consensus 263 ~~s~~~~-~l~s~s---~Dg~i~iwd~~~~~~~~~~----~~~--~~~~~~~~~--------------h~~~i~~v~~~- 317 (821)
++++++. .+++-. .++.|.+||+.+++..... ... ... ....+ ....+..++++
T Consensus 126 ~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~-~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~ 204 (343)
T 2qe8_A 126 AVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID-LVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA 204 (343)
T ss_dssp EEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC-CEETTEECBEECTTSCEECCCCCEEEEEECT
T ss_pred EEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc-eeECCEEEEeccCCCceeceecccceeEecc
Confidence 9998654 446655 6789999998865431000 000 000 00000 01235788998
Q ss_pred -CCEEEEEeCCC-eEEEEcC----CCc-----eee--EeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc-CCcCCC
Q 003423 318 -DSFIITAGEDC-TCRVWGS----DGK-----QLK--MIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF-QAFLPG 383 (821)
Q Consensus 318 -~~~l~s~~~dg-~i~iwd~----~~~-----~~~--~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~-~~~~~~ 383 (821)
++.|+.+..++ .+..++. ++. ... ...++.+ ....++++++|+++++...++.|.+||. ++. +.
T Consensus 205 dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~-~~ 282 (343)
T 2qe8_A 205 ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRA-YK 282 (343)
T ss_dssp TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTE-EE
T ss_pred CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCC-EE
Confidence 45777777665 4433332 111 000 1123333 3567899999999999888999999998 432 00
Q ss_pred cccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEec
Q 003423 384 SLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN 438 (821)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~ 438 (821)
. +.. ...-..+..++|.+++.++++++
T Consensus 283 ~------------------~~~----------~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 283 L------------------LVT----------DEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp E------------------EEE----------CGGGSCEEEEEECTTSCEEEEEC
T ss_pred E------------------EEE----------CCceecCCeeEECCCCcEEEEeC
Confidence 0 000 00123488999999988888775
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.39 E-value=0.00015 Score=70.73 Aligned_cols=207 Identities=9% Similarity=0.006 Sum_probs=132.6
Q ss_pred cceeeeccCCC--CcEEEEEEeecCCCCCEEEEEEC--CCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEE
Q 003423 122 LSLVQSLPRLS--HWVFDVCFLKVCNGNRSLAIGCS--DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (821)
Q Consensus 122 ~~~~~~~~~h~--~~I~~~~~~~~~~~~~~l~t~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~ 197 (821)
.+.+.+++ |. .....++|+| ++.+.++.+. ++.|++.|..+++.+.++..+.....-.+.+. ++.+.+
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~---dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~----g~~lyv 80 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAE---NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL----NEKLYQ 80 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECS---TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE----TTEEEE
T ss_pred ceEEEEEE-CCCCCCcccEEEeC---CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe----CCEEEE
Confidence 34455553 43 3468899998 7754444443 58999999999999988764433222233331 234444
Q ss_pred EEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCC
Q 003423 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277 (821)
Q Consensus 198 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~D 277 (821)
+...++.+.++|.. +.+.+.++..-... ...+++||+.|+.+..+
T Consensus 81 ~t~~~~~v~viD~~---------------------------------t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs 125 (266)
T 2iwa_A 81 VVWLKNIGFIYDRR---------------------------------TLSNIKNFTHQMKD--GWGLATDGKILYGSDGT 125 (266)
T ss_dssp EETTCSEEEEEETT---------------------------------TTEEEEEEECCSSS--CCEEEECSSSEEEECSS
T ss_pred EEecCCEEEEEECC---------------------------------CCcEEEEEECCCCC--eEEEEECCCEEEEECCC
Confidence 45568999999988 55566666422111 23355578777766778
Q ss_pred CeEEEEecccCcccCCCCceeeeceEEeccce---eEEEEEEcCCEEEEEe-CCCeEEEEcC-CCceeeEeeccc-----
Q 003423 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA---RVWDCCLTDSFIITAG-EDCTCRVWGS-DGKQLKMIKEHI----- 347 (821)
Q Consensus 278 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~---~i~~v~~~~~~l~s~~-~dg~i~iwd~-~~~~~~~~~~h~----- 347 (821)
+.|.++|..+.+. ...+ ....+.. .++.+.|.+..++... .++.|.+.|. +++.+..+....
T Consensus 126 ~~l~viD~~t~~v-----~~~I---~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~ 197 (266)
T 2iwa_A 126 SILYEIDPHTFKL-----IKKH---NVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKL 197 (266)
T ss_dssp SEEEEECTTTCCE-----EEEE---ECEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHH
T ss_pred CeEEEEECCCCcE-----EEEE---EECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccc
Confidence 9999999988654 3322 1111112 3567777765665555 5789999999 788888876421
Q ss_pred -------CCCeEEEEEecCCC-EEEEEeCCCcEEEEEcCC
Q 003423 348 -------GRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 348 -------~~~i~~l~~~~~~~-~l~tg~~dg~I~iwd~~~ 379 (821)
......++++|+++ +++++...+.+...++..
T Consensus 198 ~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 198 IDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp HHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred ccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 11357999999976 456666788888888743
No 242
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.36 E-value=5.2e-05 Score=72.84 Aligned_cols=180 Identities=12% Similarity=0.050 Sum_probs=114.7
Q ss_pred EEEEEeccCCCCCCcceEEe-ecCC--eEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCC
Q 003423 21 SALCFVHLPSHLSSLPFLLA-GSGS--QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (821)
Q Consensus 21 t~l~~~~~p~~~~~~~~l~~-g~~~--~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~ 97 (821)
-.|.|+ . +.+..+ |.+| .|+++|+++|+.+.++......--.++.+..+ ..+++.|.++
T Consensus 46 qGL~~~--~-----~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~-----------~ly~ltw~~~ 107 (262)
T 3nol_A 46 EGFFYR--N-----GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKD-----------KIVGLTWKNG 107 (262)
T ss_dssp EEEEEE--T-----TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETT-----------EEEEEESSSS
T ss_pred ceEEEE--C-----CEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCC-----------EEEEEEeeCC
Confidence 456666 2 233333 4444 99999999999999998654433345665532 3677778899
Q ss_pred eEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCc
Q 003423 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE 177 (821)
Q Consensus 98 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~ 177 (821)
.+.+||..+ ++.+.+++--. ....+.+ +++.|+.+..++.|.++|..+.+.+.++....
T Consensus 108 ~v~v~D~~t---------------~~~~~ti~~~~---eG~glt~---dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~ 166 (262)
T 3nol_A 108 LGFVWNIRN---------------LRQVRSFNYDG---EGWGLTH---NDQYLIMSDGTPVLRFLDPESLTPVRTITVTA 166 (262)
T ss_dssp EEEEEETTT---------------CCEEEEEECSS---CCCCEEE---CSSCEEECCSSSEEEEECTTTCSEEEEEECEE
T ss_pred EEEEEECcc---------------CcEEEEEECCC---CceEEec---CCCEEEEECCCCeEEEEcCCCCeEEEEEEecc
Confidence 999999864 34444444222 2233446 77777777667889999999999888776432
Q ss_pred --ce--eEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEe
Q 003423 178 --RC--LLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (821)
Q Consensus 178 --~~--~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (821)
+. .+..+.+ .++.+.+....++.|.+.|.. +++.+..+.
T Consensus 167 ~g~~~~~lNELe~----~~G~lyan~w~~~~I~vIDp~---------------------------------tG~V~~~Id 209 (262)
T 3nol_A 167 HGEELPELNELEW----VDGEIFANVWQTNKIVRIDPE---------------------------------TGKVTGIID 209 (262)
T ss_dssp TTEECCCEEEEEE----ETTEEEEEETTSSEEEEECTT---------------------------------TCBEEEEEE
T ss_pred CCccccccceeEE----ECCEEEEEEccCCeEEEEECC---------------------------------CCcEEEEEE
Confidence 11 1222333 256555555567889998887 333333332
Q ss_pred c------------CCCcEEEEEEcCCCCEEEEEeC
Q 003423 254 G------------HEGSIFRIEWSSCGSKLVSVSD 276 (821)
Q Consensus 254 ~------------h~~~I~~l~~s~~~~~l~s~s~ 276 (821)
- -....++|||+|+++.|...+.
T Consensus 210 ~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 210 LNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp CTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 1 1246799999999887766665
No 243
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.34 E-value=2e-05 Score=81.62 Aligned_cols=270 Identities=8% Similarity=-0.048 Sum_probs=151.1
Q ss_pred CCcceeeccceeeeeeE-----EEEEeccCCCCCCcceEEeec-----------CCeEEEEECCCCeeeeEEEeec----
Q 003423 5 DLSEWRLDVGQYLGEIS-----ALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLEAGTLIRPFQVFH---- 64 (821)
Q Consensus 5 ~i~~w~~~~~~~~~~Vt-----~l~~~~~p~~~~~~~~l~~g~-----------~~~i~iwd~~t~~~~~~~~~~~---- 64 (821)
++.+.|..+++-.+.|. .++++ || ++++.++. ++.|.+||+.+++.+.++....
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P~i~~s--pD----g~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~ 120 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLSLAVAG--HS----GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF 120 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTCEEEEC--TT----SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC
T ss_pred eEEEEECCCCeEEEEEeCCCCCceEEC--CC----CCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccc
Confidence 55688888887443321 79999 99 44555543 5899999999999999998641
Q ss_pred --cccEEeEEeccccCCCCCCccceeeEEEEE-c-CCeEEE--EEEeecCCCCCCCCCccccccceeeeccCCCCcEEEE
Q 003423 65 --GIRLHGISCNFINCTEGSVSTRVTFEVALF-G-EKRVKL--FELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (821)
Q Consensus 65 --~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~-g-~~~v~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~ 138 (821)
....+++.++|++ + .++++. + ++.+.+ +|... +..+.- .+. .
T Consensus 121 ~~g~~P~~ia~SpDG-------k---~lyVan~~~~~~v~V~~iD~~t------------------v~~i~v-~~~---~ 168 (368)
T 1mda_H 121 SVGPRVHIIGNCASS-------A---CLLFFLFGSSAAAGLSVPGASD------------------DQLTKS-ASC---F 168 (368)
T ss_dssp CBSCCTTSEEECTTS-------S---CEEEEECSSSCEEEEEETTTEE------------------EEEEEC-SSC---C
T ss_pred ccCCCcceEEEcCCC-------C---EEEEEccCCCCeEEEEEEchhh------------------ceEEEC-CCc---e
Confidence 1346778888553 2 344443 3 467888 77653 111110 011 1
Q ss_pred EEeecCCCC-CEEEEEECCCcEEEEEccC-----CceeEE----EccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEE
Q 003423 139 CFLKVCNGN-RSLAIGCSDNSIRVWDISN-----SSIILE----VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVW 208 (821)
Q Consensus 139 ~~~~~~~~~-~~l~t~~~d~~i~iwd~~~-----~~~~~~----~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vw 208 (821)
.+.| ++ ..+++.+.||.+.+.|+.+ ++.... +....... . . +++..++..+. +.+.+.
T Consensus 169 ~~~p---~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~----~~~~~~~~vs~-~~V~vi 236 (368)
T 1mda_H 169 HIHP---GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-A----NYPGMLVWAVA-SSILQG 236 (368)
T ss_dssp CCEE---EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-E----TTTTEEEECBS-SCCEEE
T ss_pred EEcc---CCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-c----ccCCEEEEEcC-CEEEEE
Confidence 2334 33 3445556788888888876 332211 11111111 1 1 33344444444 888888
Q ss_pred EcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeC---------CCe
Q 003423 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD---------DRS 279 (821)
Q Consensus 209 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~---------Dg~ 279 (821)
|........ +..+.+.... ...... . ......++++|++++++.+.. +..
T Consensus 237 D~~~~~~~v----------------~~~~~~~~~~-~~~~~~--~--p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~ 295 (368)
T 1mda_H 237 DIPAAGATM----------------KAAIDGNESG-RKADNF--R--SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN 295 (368)
T ss_dssp ECCSSCCEE----------------ECCCCSSCTH-HHHTTE--E--ECSSSCEEEETTTTEEEEEEEECSSCTTSCEEE
T ss_pred ECCCCcceE----------------EEEEEecccc-cccccc--c--cCcceeeEEcCCCCEEEEEeccccCcccccCCC
Confidence 875110000 0000000000 000000 0 011112679999988765432 235
Q ss_pred EEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CC-EEEEEe-CCCeEEEEcC-CCceeeEeecccCCCeEEE
Q 003423 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FIITAG-EDCTCRVWGS-DGKQLKMIKEHIGRGIWRC 354 (821)
Q Consensus 280 i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~-~l~s~~-~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l 354 (821)
+.++|+.+.+. +. .+.. ....+.++|+ ++ .+++.. .+++|.++|+ +++.+.++..... .+.+
T Consensus 296 ~~ViD~~t~~v-----v~-----~i~v-g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~--P~~i 362 (368)
T 1mda_H 296 TSSVTASVGQT-----SG-----PISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG--PESL 362 (368)
T ss_dssp EEEEESSSCCE-----EE-----CCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC--CCEE
T ss_pred EEEEECCCCeE-----EE-----EEEC-CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC--CCEE
Confidence 66999998765 32 2221 2257889998 33 677777 5999999999 7888888876554 5677
Q ss_pred EEec
Q 003423 355 LYDS 358 (821)
Q Consensus 355 ~~~~ 358 (821)
++.+
T Consensus 363 ~~~~ 366 (368)
T 1mda_H 363 SVQN 366 (368)
T ss_dssp ECCC
T ss_pred Eeec
Confidence 7654
No 244
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.32 E-value=0.00019 Score=68.92 Aligned_cols=185 Identities=11% Similarity=0.064 Sum_probs=117.4
Q ss_pred cEEEEEEeecCCCCCEEEEEECCC--cEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcc
Q 003423 134 WVFDVCFLKVCNGNRSLAIGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (821)
Q Consensus 134 ~I~~~~~~~~~~~~~~l~t~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~ 211 (821)
....+.|+ ++.+..+++.+| .|+++|+.+++.+.++..+....--.+.+. ++.+.+....++.+.++|..
T Consensus 44 ftqGL~~~----~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~----g~~ly~ltw~~~~v~v~D~~ 115 (262)
T 3nol_A 44 FTEGFFYR----NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW----KDKIVGLTWKNGLGFVWNIR 115 (262)
T ss_dssp EEEEEEEE----TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE----TTEEEEEESSSSEEEEEETT
T ss_pred ccceEEEE----CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe----CCEEEEEEeeCCEEEEEECc
Confidence 35778886 556666666665 899999999999988875543322223321 23333334458999999998
Q ss_pred cCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCccc
Q 003423 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK 291 (821)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~ 291 (821)
+.+.+.++.-.... .+++ ++++.|+.+..++.|.++|..+.+.
T Consensus 116 ---------------------------------t~~~~~ti~~~~eG-~glt--~dg~~L~~SdGs~~i~~iDp~T~~v- 158 (262)
T 3nol_A 116 ---------------------------------NLRQVRSFNYDGEG-WGLT--HNDQYLIMSDGTPVLRFLDPESLTP- 158 (262)
T ss_dssp ---------------------------------TCCEEEEEECSSCC-CCEE--ECSSCEEECCSSSEEEEECTTTCSE-
T ss_pred ---------------------------------cCcEEEEEECCCCc-eEEe--cCCCEEEEECCCCeEEEEcCCCCeE-
Confidence 56666666532211 2343 5677776666678899999988665
Q ss_pred CCCCceeeeceEEeccc-eeEEEEEEcCCEEEEEe-CCCeEEEEcC-CCceeeEeecc-----------cCCCeEEEEEe
Q 003423 292 DSDSIEEVGSSVLYGHN-ARVWDCCLTDSFIITAG-EDCTCRVWGS-DGKQLKMIKEH-----------IGRGIWRCLYD 357 (821)
Q Consensus 292 ~~~~~~~~~~~~~~~h~-~~i~~v~~~~~~l~s~~-~dg~i~iwd~-~~~~~~~~~~h-----------~~~~i~~l~~~ 357 (821)
...+.. ...+.. ..+..+.+.+..++... .+..|.+.|. +|+.+..+... .......||++
T Consensus 159 ----~~~I~V-~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~d 233 (262)
T 3nol_A 159 ----VRTITV-TAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWD 233 (262)
T ss_dssp ----EEEEEC-EETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEE
T ss_pred ----EEEEEe-ccCCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEc
Confidence 332211 111111 23455666655555554 6789999999 78887776542 11235789999
Q ss_pred cCCCEEEEEeC
Q 003423 358 SLSSLLVTAGF 368 (821)
Q Consensus 358 ~~~~~l~tg~~ 368 (821)
|+++.|+..|.
T Consensus 234 p~~~~lfVTGK 244 (262)
T 3nol_A 234 KEHHRLFVTGK 244 (262)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCEEEEECC
Confidence 98887777764
No 245
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.31 E-value=8.8e-08 Score=100.68 Aligned_cols=179 Identities=8% Similarity=-0.075 Sum_probs=97.3
Q ss_pred CCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCc
Q 003423 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (821)
Q Consensus 146 ~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~ 225 (821)
++..+++++.|+.|..||..+|+.+.++.. ..+ .+..+ ..++.++++++.||.|+.||..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~-~s~p~---~~~g~~~v~~s~dg~l~a~d~~t------------- 68 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPV-LQVPT---HVEEPAFLPDPNDGSLYTLGSKN------------- 68 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCS-CCCC--------CCEEECTTTCCEEEC-----------------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCc-eecce---EcCCCEEEEeCCCCEEEEEECCC-------------
Confidence 567899999999999999999999877665 111 11111 24566778888999999999872
Q ss_pred ccCCCCCCcceeeecccccceeeEEEEecCCC-cEEE-EEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceE
Q 003423 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG-SIFR-IEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV 303 (821)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~I~~-l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 303 (821)
++.+..+..+.. .+.+ ..+. ++..+++++.|+.|+.||..+++. . ..
T Consensus 69 --------------------G~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~-----~-----w~ 117 (369)
T 2hz6_A 69 --------------------NEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEK-----Q-----QT 117 (369)
T ss_dssp ---------------------CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-----------------
T ss_pred --------------------CceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcE-----E-----EE
Confidence 222222211110 0000 0011 345677888899999999998865 2 12
Q ss_pred EeccceeEEEEEEcCCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCC---CEEEEEeCCCcEEEEEcCC
Q 003423 304 LYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS---SLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 304 ~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~---~~l~tg~~dg~I~iwd~~~ 379 (821)
+..+. .+. .+..+..+++++.|+.++.||. +|+.+..+..+. ....++.++. ..+++++.||.|..||.++
T Consensus 118 ~~~~~-~~~-~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t 192 (369)
T 2hz6_A 118 LSSAF-ADS-LSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSES 192 (369)
T ss_dssp -----------------EEEEEEEEEEECCCSSSSSCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred ecCCC-ccc-ccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCC
Confidence 22221 111 1114678899999999999998 777665554321 1222333332 5677889999999999853
No 246
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.29 E-value=0.00091 Score=66.30 Aligned_cols=249 Identities=9% Similarity=-0.019 Sum_probs=139.0
Q ss_pred eEEeecCCeEEEEECCCCeee-----eEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCC
Q 003423 37 FLLAGSGSQVLLYDLEAGTLI-----RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPN 111 (821)
Q Consensus 37 ~l~~g~~~~i~iwd~~t~~~~-----~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~ 111 (821)
+|+.+..+.|+.++++..... ..+.. ....++++.+++.. + ..+++-.+.+.|..+++....
T Consensus 3 ~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~-~~~~~~gi~~d~~~-------~--~ly~~d~~~~~I~~~~~~g~~--- 69 (267)
T 1npe_A 3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHI-PAKVIIGLAFDCVD-------K--VVYWTDISEPSIGRASLHGGE--- 69 (267)
T ss_dssp EEEEEEEEEEEEEEESSSCBCGGGCEEEEEE-EEEEEEEEEEETTT-------T--EEEEEETTTTEEEEEESSSCC---
T ss_pred EEEEEcCCeEEEEEecCcccccccceeeecC-CCCcEEEEEEecCC-------C--EEEEEECCCCEEEEEecCCCC---
Confidence 455555568999998765421 11222 12357899998541 1 123333456888888875321
Q ss_pred CCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEE-ECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCC
Q 003423 112 SQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDN 190 (821)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s 190 (821)
....+.........+++.| ++..|..+ ...+.|.+++............. ......+++ +
T Consensus 70 ------------~~~~~~~~~~~p~~ia~d~---~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~~~P~~i~v---d 130 (267)
T 1npe_A 70 ------------PTTIIRQDLGSPEGIALDH---LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG-LVNPRGIVT---D 130 (267)
T ss_dssp ------------CEEEECTTCCCEEEEEEET---TTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSSEEEEEE---E
T ss_pred ------------cEEEEECCCCCccEEEEEe---cCCeEEEEECCCCEEEEEEcCCCCEEEEEECC-CCCccEEEE---e
Confidence 1111222224578999998 76655555 45678999998643322112211 112234444 3
Q ss_pred ccCeEE-EEEee--CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCC
Q 003423 191 LEALRI-ASGTI--YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC 267 (821)
Q Consensus 191 ~~~~~l-~sg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~ 267 (821)
+++..| ++... .+.|..+++... ....+ ....-....+++++|+
T Consensus 131 ~~~g~lyv~~~~~~~~~I~~~~~dg~-------------------------------~~~~~--~~~~~~~P~gia~d~~ 177 (267)
T 1npe_A 131 PVRGNLYWTDWNRDNPKIETSHMDGT-------------------------------NRRIL--AQDNLGLPNGLTFDAF 177 (267)
T ss_dssp TTTTEEEEEECCSSSCEEEEEETTSC-------------------------------CCEEE--ECTTCSCEEEEEEETT
T ss_pred eCCCEEEEEECCCCCcEEEEEecCCC-------------------------------CcEEE--EECCCCCCcEEEEcCC
Confidence 433333 33322 467877776610 11111 1122346789999998
Q ss_pred CCEE-EEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEe-CCCeEEEEcC-CCceeeEee
Q 003423 268 GSKL-VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAG-EDCTCRVWGS-DGKQLKMIK 344 (821)
Q Consensus 268 ~~~l-~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~-~dg~i~iwd~-~~~~~~~~~ 344 (821)
++.| ++-...+.|.++|...... . ....+ ......++..++.++.+. ..+.|..+|. +++.+..+.
T Consensus 178 ~~~lyv~d~~~~~I~~~~~~g~~~------~----~~~~~-~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 178 SSQLCWVDAGTHRAECLNPAQPGR------R----KVLEG-LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp TTEEEEEETTTTEEEEEETTEEEE------E----EEEEC-CCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CCEEEEEECCCCEEEEEecCCCce------E----EEecC-CCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 7655 5555668999999875432 1 11112 122345666655555554 5689999999 578887776
Q ss_pred cccCCCeEEEEEecCCC
Q 003423 345 EHIGRGIWRCLYDSLSS 361 (821)
Q Consensus 345 ~h~~~~i~~l~~~~~~~ 361 (821)
.......+.+++.|++.
T Consensus 247 ~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 247 PHKQTRLYGITIALSQC 263 (267)
T ss_dssp CSSCCCCCCEEEECSCC
T ss_pred cccccccceeeecCccC
Confidence 44321356788888764
No 247
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.29 E-value=0.00023 Score=67.74 Aligned_cols=149 Identities=13% Similarity=0.071 Sum_probs=96.8
Q ss_pred eEEEEEeccCCCCCCcceEEe-ecC--CeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcC
Q 003423 20 ISALCFVHLPSHLSSLPFLLA-GSG--SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (821)
Q Consensus 20 Vt~l~~~~~p~~~~~~~~l~~-g~~--~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~ 96 (821)
.-.|.|+ ++ .+..+ |.. +.|+++|+++|+.+.++.......-.++.+..+ ..+.+.|.+
T Consensus 23 tqGL~~~--~~-----~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~-----------~ly~ltw~~ 84 (243)
T 3mbr_X 23 TEGLFYL--RG-----HLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRD-----------RLIQLTWRN 84 (243)
T ss_dssp EEEEEEE--TT-----EEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETT-----------EEEEEESSS
T ss_pred cccEEEE--CC-----EEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCC-----------EEEEEEeeC
Confidence 5577888 43 33333 443 599999999999999998755433455665532 366777889
Q ss_pred CeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccC
Q 003423 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (821)
Q Consensus 97 ~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~ 176 (821)
+.+.+||..+ ++.+.+++--... ..+.+ +++.|+++..++.|.++|..+.+.+.++...
T Consensus 85 ~~v~v~D~~t---------------l~~~~ti~~~~~G---wglt~---dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~ 143 (243)
T 3mbr_X 85 HEGFVYDLAT---------------LTPRARFRYPGEG---WALTS---DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVT 143 (243)
T ss_dssp SEEEEEETTT---------------TEEEEEEECSSCC---CEEEE---CSSCEEEECSSSEEEEECTTTCCEEEEEECE
T ss_pred CEEEEEECCc---------------CcEEEEEeCCCCc---eEEee---CCCEEEEECCCCeEEEEeCCCCeEEEEEEEc
Confidence 9999999764 3445544422221 23335 7777777777889999999999988877643
Q ss_pred cc--e--eEEEEeeccCCccCeEEEEEeeCCEEEEEEcc
Q 003423 177 ER--C--LLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (821)
Q Consensus 177 ~~--~--~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~ 211 (821)
.. . .+.-+.+ .++.+.|....+..|.+.|..
T Consensus 144 ~~g~~~~~lNeLe~----~~G~lyanvw~s~~I~vIDp~ 178 (243)
T 3mbr_X 144 AGGRPLDNLNELEW----VNGELLANVWLTSRIARIDPA 178 (243)
T ss_dssp ETTEECCCEEEEEE----ETTEEEEEETTTTEEEEECTT
T ss_pred cCCcccccceeeEE----eCCEEEEEECCCCeEEEEECC
Confidence 21 1 1222332 255555555567788888887
No 248
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.26 E-value=6.1e-05 Score=72.31 Aligned_cols=148 Identities=10% Similarity=-0.008 Sum_probs=95.7
Q ss_pred EEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEE
Q 003423 21 SALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVK 100 (821)
Q Consensus 21 t~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~ 100 (821)
-.|.|+ .+ .-|..+|.++.|+++|+++|+.+.++ .....--.++.+..+ ..+++.|.++.+.
T Consensus 58 qGL~~~--~~----~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~-----------~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 58 QGLVFH--QG----HFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGE-----------RLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEEE--TT----EEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSS-----------CEEEEESSSCEEE
T ss_pred ceEEEE--CC----EEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCC-----------EEEEEEccCCEEE
Confidence 466666 33 33334455788999999999999988 544323345666533 3677778899999
Q ss_pred EEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcc--
Q 003423 101 LFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPER-- 178 (821)
Q Consensus 101 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~-- 178 (821)
+||..+ ++.+.+++--.. ...+.+ +++.|+.+..++.|.++|..+.+.+.++.....
T Consensus 120 V~D~~T---------------l~~~~ti~~~~e---GwGLt~---Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~ 178 (268)
T 3nok_A 120 TWSGMP---------------PQRERTTRYSGE---GWGLCY---WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQ 178 (268)
T ss_dssp EEETTT---------------TEEEEEEECSSC---CCCEEE---ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTE
T ss_pred EEECCc---------------CcEEEEEeCCCc---eeEEec---CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCc
Confidence 999864 344454443222 123335 777787777789999999999998887764321
Q ss_pred e--eEEEEeeccCCccCeEEEEEeeCCEEEEEEcc
Q 003423 179 C--LLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (821)
Q Consensus 179 ~--~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~ 211 (821)
. .+.-+.+ .++.+.|....++.|.+-|..
T Consensus 179 ~v~~lNeLe~----~dG~lyanvw~s~~I~vIDp~ 209 (268)
T 3nok_A 179 PVELINELEC----ANGVIYANIWHSSDVLEIDPA 209 (268)
T ss_dssp ECCCEEEEEE----ETTEEEEEETTCSEEEEECTT
T ss_pred ccccccccEE----eCCEEEEEECCCCeEEEEeCC
Confidence 1 1222333 256555555567888888887
No 249
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.25 E-value=0.00025 Score=73.73 Aligned_cols=204 Identities=15% Similarity=0.141 Sum_probs=122.5
Q ss_pred cceEEe-ec-CCeEEEEECCCC----eeeeEEE---ee---ccccEEeEEeccccCCCCCCccceeeEEEEEcC------
Q 003423 35 LPFLLA-GS-GSQVLLYDLEAG----TLIRPFQ---VF---HGIRLHGISCNFINCTEGSVSTRVTFEVALFGE------ 96 (821)
Q Consensus 35 ~~~l~~-g~-~~~i~iwd~~t~----~~~~~~~---~~---~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~------ 96 (821)
+++|++ |. ++.|.|+|+.+. +++++++ .+ ...+-|.+...|++ .++.+.|+
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-----------i~Vs~~g~~~g~~~ 163 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-----------IYISALGNEEGEGP 163 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-----------EEEEEEEETTSCSC
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-----------EEEEcCCCcCCCCC
Confidence 455555 44 689999999866 6777663 11 11256777777663 45555555
Q ss_pred CeEEEEEEeecCCCCCCCCCccccccceeeeccC--CC-CcEEEEEEeecCCCCCEEEEEE-------------------
Q 003423 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR--LS-HWVFDVCFLKVCNGNRSLAIGC------------------- 154 (821)
Q Consensus 97 ~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~-~~I~~~~~~~~~~~~~~l~t~~------------------- 154 (821)
+.+.++|..+. +.+.+++. .. .--+++-|+| +++.+++..
T Consensus 164 g~v~vlD~~T~---------------~v~~~~~~~~~~~~~~Yd~~~~p---~~~~mvsS~wg~p~~~~~g~~~~~~~~~ 225 (462)
T 2ece_A 164 GGILMLDHYSF---------------EPLGKWEIDRGDQYLAYDFWWNL---PNEVLVSSEWAVPNTIEDGLKLEHLKDR 225 (462)
T ss_dssp CEEEEECTTTC---------------CEEEECCSBCTTCCCCCCEEEET---TTTEEEECBCCCHHHHTTCCCTTTHHHH
T ss_pred CeEEEEECCCC---------------eEEEEEccCCCCccccceEEECC---CCCEEEEccCcCccccccccchhhhhhc
Confidence 67888886643 34444431 21 2245688899 999888774
Q ss_pred CCCcEEEEEccCCceeEEEccC-cceeEEEEeeccCCccCeEEEEEe------eCCEEEEEEcccCCcccCCCCCCCccc
Q 003423 155 SDNSIRVWDISNSSIILEVHSP-ERCLLYSMKLWGDNLEALRIASGT------IYNEIIVWKVDWEHVAPLLNSPEGNHA 227 (821)
Q Consensus 155 ~d~~i~iwd~~~~~~~~~~~~~-~~~~~~s~~~~~~s~~~~~l~sg~------~dg~i~vwd~~~~~~~~~~~~~~~~~~ 227 (821)
..++|.+||+.+++.+.++... .......+.|. .++++.++.++. .+++|.+|....+....
T Consensus 226 ~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~-~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~---------- 294 (462)
T 2ece_A 226 YGNRIHFWDLRKRKRIHSLTLGEENRMALELRPL-HDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNA---------- 294 (462)
T ss_dssp SCCEEEEEETTTTEEEEEEESCTTEEEEEEEEEC-SSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEE----------
T ss_pred cCCEEEEEECCCCcEeeEEecCCCCCccceeEee-ECCCCCEEEEEEeeeccCCCceEEEEEecCCceeE----------
Confidence 3689999999999888888764 22333334332 257888777766 46789888876110000
Q ss_pred CCCCCCcceeeecccccceeeEEEEe-------cCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEecccC
Q 003423 228 HGSSSDFKCFKLQDQQHTAVNLFRLV-------GHEGSIFRIEWSSCGSKLVSV-SDDRSARIWEVRAE 288 (821)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~I~~l~~s~~~~~l~s~-s~Dg~i~iwd~~~~ 288 (821)
...+.+.. .+....+. +-......|.++|||++|..+ -..+.|.++|+.+.
T Consensus 295 ------~~vIdi~~----~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 295 ------EKVIEIPA----EPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp ------EEEEEECC----EECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred ------EEEEeCCC----ccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 00000000 00000000 002346789999999987554 45789999999754
No 250
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.20 E-value=0.0007 Score=64.47 Aligned_cols=194 Identities=12% Similarity=0.078 Sum_probs=123.2
Q ss_pred cceeeeccCCC--CcEEEEEEeecCCCCCEEEEEECC--CcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEE
Q 003423 122 LSLVQSLPRLS--HWVFDVCFLKVCNGNRSLAIGCSD--NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (821)
Q Consensus 122 ~~~~~~~~~h~--~~I~~~~~~~~~~~~~~l~t~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~ 197 (821)
.+.+..+ .|+ .....+.|+ ++.+..+.+.+ +.|+.+|+.+++.+.++..+....--.+.+. ++.+..
T Consensus 9 ~~v~~~~-phd~~~ftqGL~~~----~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~----~~~ly~ 79 (243)
T 3mbr_X 9 YRVVKRY-PHDTTAFTEGLFYL----RGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW----RDRLIQ 79 (243)
T ss_dssp EEEEEEE-ECCTTCCEEEEEEE----TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE----TTEEEE
T ss_pred eEEEEEc-CCCCccccccEEEE----CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe----CCEEEE
Confidence 3445555 344 346788887 44555555554 4899999999999988875554322233331 234444
Q ss_pred EEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCC
Q 003423 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277 (821)
Q Consensus 198 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~D 277 (821)
....++.+.++|.. +.+.+.++..... =.+++ ++++.|+.+..+
T Consensus 80 ltw~~~~v~v~D~~---------------------------------tl~~~~ti~~~~~-Gwglt--~dg~~L~vSdgs 123 (243)
T 3mbr_X 80 LTWRNHEGFVYDLA---------------------------------TLTPRARFRYPGE-GWALT--SDDSHLYMSDGT 123 (243)
T ss_dssp EESSSSEEEEEETT---------------------------------TTEEEEEEECSSC-CCEEE--ECSSCEEEECSS
T ss_pred EEeeCCEEEEEECC---------------------------------cCcEEEEEeCCCC-ceEEe--eCCCEEEEECCC
Confidence 45568999999998 6666766653222 23444 467666666668
Q ss_pred CeEEEEecccCcccCCCCceeeeceEEeccc---eeEEEEEEcCCEEEEEe-CCCeEEEEcC-CCceeeEeecc------
Q 003423 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHN---ARVWDCCLTDSFIITAG-EDCTCRVWGS-DGKQLKMIKEH------ 346 (821)
Q Consensus 278 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~---~~i~~v~~~~~~l~s~~-~dg~i~iwd~-~~~~~~~~~~h------ 346 (821)
+.|.++|..+.+. ...+ ....+. ..++.+.+.+..++... .+..|.+.|. +|+.+..+...
T Consensus 124 ~~l~~iDp~t~~~-----~~~I---~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~ 195 (243)
T 3mbr_X 124 AVIRKLDPDTLQQ-----VGSI---KVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDA 195 (243)
T ss_dssp SEEEEECTTTCCE-----EEEE---ECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTT
T ss_pred CeEEEEeCCCCeE-----EEEE---EEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccc
Confidence 8999999988655 3322 111222 23456667655555554 6789999999 78877776522
Q ss_pred ------cCCCeEEEEEecCCCEEEEEeC
Q 003423 347 ------IGRGIWRCLYDSLSSLLVTAGF 368 (821)
Q Consensus 347 ------~~~~i~~l~~~~~~~~l~tg~~ 368 (821)
.......|+++|+++.|+..|.
T Consensus 196 ~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 196 DALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred ccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 2224678999998777766664
No 251
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.18 E-value=0.00028 Score=67.70 Aligned_cols=182 Identities=8% Similarity=-0.030 Sum_probs=118.4
Q ss_pred cEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccC
Q 003423 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (821)
Q Consensus 134 ~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~ 213 (821)
....+.|+ ++.+..+.+.+|.|+++|+.+++.+.++ -+....--.+.+. .+.+.+....++.+.++|..
T Consensus 56 ftqGL~~~----~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~----g~~Ly~ltw~~~~v~V~D~~-- 124 (268)
T 3nok_A 56 FTQGLVFH----QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD----GERLYQLTWTEGLLFTWSGM-- 124 (268)
T ss_dssp CEEEEEEE----TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC----SSCEEEEESSSCEEEEEETT--
T ss_pred ccceEEEE----CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe----CCEEEEEEccCCEEEEEECC--
Confidence 35678876 5566777778889999999999998887 4443222223331 23333344568999999998
Q ss_pred CcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCC
Q 003423 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS 293 (821)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 293 (821)
+.+.+.++..- +.=.+++ ++++.|+.+..++.|.++|..+.+.
T Consensus 125 -------------------------------Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v--- 167 (268)
T 3nok_A 125 -------------------------------PPQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFAL--- 167 (268)
T ss_dssp -------------------------------TTEEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCE---
T ss_pred -------------------------------cCcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeE---
Confidence 66666666532 2223444 5678887777789999999988665
Q ss_pred CCceeeeceEEeccce---eEEEEEEcCCEEEEEe-CCCeEEEEcC-CCceeeEeecc------------cCCCeEEEEE
Q 003423 294 DSIEEVGSSVLYGHNA---RVWDCCLTDSFIITAG-EDCTCRVWGS-DGKQLKMIKEH------------IGRGIWRCLY 356 (821)
Q Consensus 294 ~~~~~~~~~~~~~h~~---~i~~v~~~~~~l~s~~-~dg~i~iwd~-~~~~~~~~~~h------------~~~~i~~l~~ 356 (821)
...+ ....+.. .+..+.|.+..|+... .+..|.+.|. +|+.+..+... .......||+
T Consensus 168 --~~~I---~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~ 242 (268)
T 3nok_A 168 --VGAV---QVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAV 242 (268)
T ss_dssp --EEEE---ECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEE
T ss_pred --EEEE---EeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEE
Confidence 3322 2222222 3456777755565554 6789999999 78877776532 1124678999
Q ss_pred ecCCCEEEEEeC
Q 003423 357 DSLSSLLVTAGF 368 (821)
Q Consensus 357 ~~~~~~l~tg~~ 368 (821)
+|+++.|+..|.
T Consensus 243 dp~~~rlfVTGK 254 (268)
T 3nok_A 243 EPGSGRIFMTGK 254 (268)
T ss_dssp CTTTCCEEEEET
T ss_pred cCCCCEEEEeCC
Confidence 998765555553
No 252
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.14 E-value=0.00014 Score=82.62 Aligned_cols=80 Identities=5% Similarity=0.008 Sum_probs=50.0
Q ss_pred CCCeEEEEecccCcccCCCCceeeeceEEeccceeEE--EEEEcCCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeE
Q 003423 276 DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW--DCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIW 352 (821)
Q Consensus 276 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~--~v~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~ 352 (821)
.+|.|..||+.+++. . ....+..+.+ .+...+.+++.++.|+.++.||. +|+.+..+....+-.-.
T Consensus 436 ~~g~l~A~D~~tG~~-----~------W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~ 504 (668)
T 1kv9_A 436 VSGALLAWDPVKQKA-----A------WKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAA 504 (668)
T ss_dssp CEEEEEEEETTTTEE-----E------EEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred ccceEEEEeCCCCcE-----E------EEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccC
Confidence 348899999988765 2 1111222222 23344789999999999999999 78888888765431112
Q ss_pred EEEEecCCC-EEEEE
Q 003423 353 RCLYDSLSS-LLVTA 366 (821)
Q Consensus 353 ~l~~~~~~~-~l~tg 366 (821)
-+.+..+|+ +++.+
T Consensus 505 p~~~~~~G~~yva~~ 519 (668)
T 1kv9_A 505 PMTFELAGRQYVAIM 519 (668)
T ss_dssp CEEEEETTEEEEEEE
T ss_pred ceEEEECCEEEEEEE
Confidence 334445565 44443
No 253
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.07 E-value=0.00033 Score=77.67 Aligned_cols=76 Identities=14% Similarity=0.037 Sum_probs=46.7
Q ss_pred CCeEEEEecccCcccCCCCceeeeceEEeccceeEEE--EEEcCCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEE
Q 003423 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD--CCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWR 353 (821)
Q Consensus 277 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~--v~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~ 353 (821)
++.|..||..+++. . ....+...+.+ +...+..++.++.|+.++.+|. +|+.+.++.......-..
T Consensus 443 ~g~l~a~D~~tG~~-----~------W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p 511 (571)
T 2ad6_A 443 MGQIRAFDLTTGKA-----K------WTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSP 511 (571)
T ss_dssp CEEEEEECTTTCCE-----E------EEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred CCeEEEEECCCCCE-----E------EEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeee
Confidence 57888888888764 2 11112222222 2223678888999999999998 899888887554311122
Q ss_pred EEEecCCCEE
Q 003423 354 CLYDSLSSLL 363 (821)
Q Consensus 354 l~~~~~~~~l 363 (821)
+.+..+++.+
T Consensus 512 ~~~~~~G~~y 521 (571)
T 2ad6_A 512 MTYSFKGKQY 521 (571)
T ss_dssp EEEEETTEEE
T ss_pred EEEEECCEEE
Confidence 3444666533
No 254
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.92 E-value=0.0075 Score=58.28 Aligned_cols=210 Identities=8% Similarity=0.031 Sum_probs=127.6
Q ss_pred eeccCCCCcEEEEEEeecCCCCCEE-EEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCE
Q 003423 126 QSLPRLSHWVFDVCFLKVCNGNRSL-AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE 204 (821)
Q Consensus 126 ~~~~~h~~~I~~~~~~~~~~~~~~l-~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~ 204 (821)
+.+++-.+.+..+++.| +++.| ++...++.|...|.. ++.++++.-....-.-.+++ .+++.++++.-.++.
T Consensus 20 ~~l~g~~~~lSGla~~~---~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~---~~~g~~~vs~E~~~~ 92 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSA---QSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEY---IGDNQFVISDERDYA 92 (255)
T ss_dssp EECTTCCSCEEEEEEET---TTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEE---CSTTEEEEEETTTTE
T ss_pred eECCCcccCcceeEEeC---CCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEE---eCCCEEEEEECCCCc
Confidence 56777777899999999 66555 456677888888887 88777764321111222333 256667666666788
Q ss_pred EEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE------ecCCCcEEEEEEcCCCCEEEEEeCCC
Q 003423 205 IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL------VGHEGSIFRIEWSSCGSKLVSVSDDR 278 (821)
Q Consensus 205 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~I~~l~~s~~~~~l~s~s~Dg 278 (821)
+.++++.... ....+... ..+.....+|+|+|.++.|.++....
T Consensus 93 l~~~~v~~~~------------------------------~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~ 142 (255)
T 3qqz_A 93 IYVISLTPNS------------------------------EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN 142 (255)
T ss_dssp EEEEEECTTC------------------------------CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS
T ss_pred EEEEEcCCCC------------------------------eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC
Confidence 9998876110 00011111 12345578999999998777776655
Q ss_pred eEEEEecccCcccCCCCceeeeceEE--eccceeEEEEEEc---CCEEEEEeCCCeEEEEcCCCceeeEeecccC-----
Q 003423 279 SARIWEVRAEYWKDSDSIEEVGSSVL--YGHNARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLKMIKEHIG----- 348 (821)
Q Consensus 279 ~i~iwd~~~~~~~~~~~~~~~~~~~~--~~h~~~i~~v~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~----- 348 (821)
...+|.++. .. ............+ ..+...+.+++++ +.+++...+...+..+|.+|+.+..+.-..+
T Consensus 143 p~~i~~~~g-~~-~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~ 220 (255)
T 3qqz_A 143 PIEVYKVNG-LL-SSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLS 220 (255)
T ss_dssp SEEEEEEES-TT-CSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCS
T ss_pred CceEEEEcc-cc-cCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcc
Confidence 666666652 11 0000111000000 0122346788887 3577777888999999999887766654322
Q ss_pred ---CCeEEEEEecCCCEEEEEeCCCcEEEE
Q 003423 349 ---RGIWRCLYDSLSSLLVTAGFDSAIKVH 375 (821)
Q Consensus 349 ---~~i~~l~~~~~~~~l~tg~~dg~I~iw 375 (821)
..-..|+++++|++.++ ++-..+..+
T Consensus 221 ~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 221 HNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp SCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred cccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 24689999999985555 555544444
No 255
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.91 E-value=0.0022 Score=72.69 Aligned_cols=51 Identities=6% Similarity=-0.010 Sum_probs=38.4
Q ss_pred CCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 327 DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 327 dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
+|.|..||+ +|+.+-+...+.. .....+...+.+++.++.||.++.||.++
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~~--~~~~~~~t~gg~vf~g~~dg~l~a~d~~t 488 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPTH--WNGGTLSTAGNLVFQGTAAGQMHAYSADK 488 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESSS--CCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred cceEEEEeCCCCcEEEEccCCCC--CcCceeEeCCCEEEEECCcccchhhhhhc
Confidence 488999998 7887766654432 34444555788999999999999999854
No 256
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.88 E-value=0.00072 Score=72.96 Aligned_cols=197 Identities=8% Similarity=-0.002 Sum_probs=115.2
Q ss_pred cceEEeec--CCeEEEEECCCCeeeeEEEeeccccEEeEEec--cccCCCCCCccceeeEEEEE----------------
Q 003423 35 LPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCN--FINCTEGSVSTRVTFEVALF---------------- 94 (821)
Q Consensus 35 ~~~l~~g~--~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~--~~~~~~~~~~~~~~~~l~~~---------------- 94 (821)
+++|.... ++.|.+.|+.+.+..+.+....+..+|++.+. |+. .++++..
T Consensus 101 G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~----------~~v~~~~~~~~p~~~dg~~l~~~ 170 (595)
T 1fwx_A 101 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRS----------NYVFCNGEDETPLVNDGTNMEDV 170 (595)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBC----------SEEEEEECSCEESSCSSSSTTCG
T ss_pred CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCC----------cEEEEecccccccCCCCcccccc
Confidence 56666655 57899999999999988877666679999984 332 1333332
Q ss_pred --cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCC---------------
Q 003423 95 --GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN--------------- 157 (821)
Q Consensus 95 --g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~--------------- 157 (821)
.++.+.++|... .+...++.--. .-..++++| +|+++++++.+.
T Consensus 171 ~~~~~~vtvID~~t---------------~~v~~qI~Vgg-~pd~~~~sp---dGk~~~vt~~~se~~~~i~~~~~~~~d 231 (595)
T 1fwx_A 171 ANYVNVFTAVDADK---------------WEVAWQVLVSG-NLDNCDADY---EGKWAFSTSYNSEKGMTLPEMTAAEMD 231 (595)
T ss_dssp GGEEEEEEEEETTT---------------TEEEEEEEESS-CCCCEEECS---SSSEEEEEESCTTCCSSHHHHTCCSEE
T ss_pred cccCceEEEEECCC---------------CeEEEEEEeCC-CccceEECC---CCCEEEEEecCcccCcchhhccccccc
Confidence 124566666542 22333322101 123466777 788777776432
Q ss_pred -----------------------cEEEEEccC--Cce-eEEEccCcceeEEEEeeccCCccCeEEEEE-eeCCEEEEEEc
Q 003423 158 -----------------------SIRVWDISN--SSI-ILEVHSPERCLLYSMKLWGDNLEALRIASG-TIYNEIIVWKV 210 (821)
Q Consensus 158 -----------------------~i~iwd~~~--~~~-~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg-~~dg~i~vwd~ 210 (821)
.|.+.|..+ ++. +..+..+... ..+.+ +||+.+++++ ..++.|.++|.
T Consensus 232 ~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~P--hGv~~---sPDGk~v~V~~~~s~~VsVid~ 306 (595)
T 1fwx_A 232 HIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNP--HGCNM---APDKKHLCVAGKLSPTVTVLDV 306 (595)
T ss_dssp EEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSC--CCEEE---CTTSSEEEEECTTSSBEEEEEG
T ss_pred eEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCc--eEEEE---cCCCCEEEEeCCCCCeEEEEEC
Confidence 467777766 444 4444322211 11222 6898876655 46899999999
Q ss_pred ccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeccc
Q 003423 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (821)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~ 287 (821)
.+..... .++ . .........+. -......++|+|+|...++.-.|.+|.+||+.+
T Consensus 307 ~~~~~~~-~~~-l-------------------~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 307 TRFDAVF-YEN-A-------------------DPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp GGHHHHH-HSC-C-------------------CGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred ccccccc-ccc-c-------------------CcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 8211000 000 0 00112222322 223468899999995456777899999999987
No 257
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.88 E-value=0.0055 Score=67.87 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=36.4
Q ss_pred CCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 326 EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 326 ~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
.+|.+..||. +|+.+-++.... .+.+..+...+..++.++.||.|+.+|.++
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~v~~g~~dg~l~a~D~~t 494 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEKF--AAWGGTLYTKGGLVWYATLDGYLKALDNKD 494 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred CCCeEEEEECCCCCEEEEecCCC--CccceeEEECCCEEEEEcCCCeEEEEECCC
Confidence 3578999998 787776665432 233333344567788899999999999854
No 258
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.85 E-value=0.004 Score=68.97 Aligned_cols=74 Identities=12% Similarity=0.066 Sum_probs=46.7
Q ss_pred CCeEEEEecccCcccCCCCceeeeceEEeccceeEEE--EEEcCCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEE
Q 003423 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD--CCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWR 353 (821)
Q Consensus 277 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~--v~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~ 353 (821)
+|.|.-||+.+++. . ....+..+.+. +...+..++.++.|+.++.+|. +|+.+-+++...+....-
T Consensus 452 ~G~l~A~D~~tG~~-----~------W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P 520 (599)
T 1w6s_A 452 LGQIKAYNAITGDY-----K------WEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYP 520 (599)
T ss_dssp CEEEEEECTTTCCE-----E------EEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred cCeEEEEECCCCCE-----E------eEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEecc
Confidence 47788888887764 2 11111222221 3334788888999999999999 899988887654421223
Q ss_pred EEEecCCC
Q 003423 354 CLYDSLSS 361 (821)
Q Consensus 354 l~~~~~~~ 361 (821)
+.+..+|+
T Consensus 521 ~~y~~~G~ 528 (599)
T 1w6s_A 521 MTYTHKGT 528 (599)
T ss_dssp EEEEETTE
T ss_pred EEEEeCCE
Confidence 45555665
No 259
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.82 E-value=0.0036 Score=69.47 Aligned_cols=75 Identities=12% Similarity=0.095 Sum_probs=48.8
Q ss_pred CCeEEEEecccCcccCCCCceeeeceEEeccceeEEE--EEEcCCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEE
Q 003423 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD--CCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWR 353 (821)
Q Consensus 277 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~--v~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~ 353 (821)
+|.|.-||+.+++. .- .. .+..+++. +...+..++.++.|+.++.||. +|+.+-+++...+-.-.-
T Consensus 465 ~G~l~A~D~~tG~~-----~W-----~~-~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P 533 (582)
T 1flg_A 465 VGSLRAMDPVSGKV-----VW-----EH-KEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP 533 (582)
T ss_dssp SEEEEEECTTTCCE-----EE-----EE-EESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred cceEEEEECCCCCE-----EE-----Ee-cCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCc
Confidence 57889999988765 21 11 11122221 2334788999999999999999 899998887655411123
Q ss_pred EEEecCCCE
Q 003423 354 CLYDSLSSL 362 (821)
Q Consensus 354 l~~~~~~~~ 362 (821)
+.+..+|+.
T Consensus 534 ~~y~~~G~q 542 (582)
T 1flg_A 534 ITWEQDGEQ 542 (582)
T ss_dssp EEEEETTEE
T ss_pred eEEEECCEE
Confidence 566667753
No 260
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.80 E-value=0.042 Score=55.92 Aligned_cols=284 Identities=9% Similarity=0.013 Sum_probs=145.9
Q ss_pred ceeeccceeeeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEe---eccccEEeEEeccccCCCCCCc
Q 003423 8 EWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQV---FHGIRLHGISCNFINCTEGSVS 84 (821)
Q Consensus 8 ~w~~~~~~~~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~---~~~~~i~~i~~~~~~~~~~~~~ 84 (821)
-|......-...+.++.|. ++ +..+++|..+.| +...+.|+--..+.. .....+.+|.+.+.
T Consensus 26 ~W~~~~~~~~~~~~~v~~~--~~----~~~~~~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~-------- 90 (327)
T 2xbg_A 26 PWEAIQLPTTATILDMSFI--DR----HHGWLVGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQGN-------- 90 (327)
T ss_dssp CEEEEECSCSSCEEEEEES--SS----SCEEEEETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEETT--------
T ss_pred CceEeecCCCCcEEEEEEC--CC----CcEEEEcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecCC--------
Confidence 3554433334568899987 54 566778887765 333344432222211 12335777877632
Q ss_pred cceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEc
Q 003423 85 TRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDI 164 (821)
Q Consensus 85 ~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~ 164 (821)
..+++...+ .||.-..+. ..++.......+.+.+..+.+.+ ++..++++ .++.| |-.
T Consensus 91 ----~~~~~g~~g--~i~~S~DgG-----------~tW~~~~~~~~~~~~~~~i~~~~---~~~~~~~~-~~g~v--~~S 147 (327)
T 2xbg_A 91 ----EGWIVGEPP--IMLHTTDGG-----------QSWSQIPLDPKLPGSPRLIKALG---NGSAEMIT-NVGAI--YRT 147 (327)
T ss_dssp ----EEEEEEETT--EEEEESSTT-----------SSCEECCCCTTCSSCEEEEEEEE---TTEEEEEE-TTCCE--EEE
T ss_pred ----eEEEEECCC--eEEEECCCC-----------CCceECccccCCCCCeEEEEEEC---CCCEEEEe-CCccE--EEE
Confidence 244444445 333332211 01333222223445578888877 77666655 45543 333
Q ss_pred c-CCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccc
Q 003423 165 S-NSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (821)
Q Consensus 165 ~-~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (821)
. .++.-..+..+....++++.+ .+++.+++.+...+..+-+|-..
T Consensus 148 ~DgG~tW~~~~~~~~~~~~~~~~---~~~~~~~~~g~~G~~~~S~d~gG------------------------------- 193 (327)
T 2xbg_A 148 KDSGKNWQALVQEAIGVMRNLNR---SPSGEYVAVSSRGSFYSTWEPGQ------------------------------- 193 (327)
T ss_dssp SSTTSSEEEEECSCCCCEEEEEE---CTTSCEEEEETTSSEEEEECTTC-------------------------------
T ss_pred cCCCCCCEEeecCCCcceEEEEE---cCCCcEEEEECCCcEEEEeCCCC-------------------------------
Confidence 3 243333333333334566665 34666776664433333333210
Q ss_pred cceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEe--ccceeEEEEEEc-CCE
Q 003423 244 HTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY--GHNARVWDCCLT-DSF 320 (821)
Q Consensus 244 ~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~h~~~i~~v~~~-~~~ 320 (821)
...+.+. ......+..+.+.++++.++ ++.+|.+++.+...++. -..+ ... .+...+.++.+. +..
T Consensus 194 ~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~t-----W~~~---~~~~~~~~~~~~~v~~~~~~~ 262 (327)
T 2xbg_A 194 TAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSEN-----WGEL---LSPLRRNSVGFLDLAYRTPNE 262 (327)
T ss_dssp SSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEE-----ECCC---BCTTSSCCSCEEEEEESSSSC
T ss_pred CceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCe-----eEec---cCCcccCCcceEEEEecCCCE
Confidence 0222221 24556788999999887654 55678887764222211 1100 100 122357888887 455
Q ss_pred EEEEeCCCeEEEEcC-CCceeeEeec---ccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 321 IITAGEDCTCRVWGS-DGKQLKMIKE---HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 321 l~s~~~dg~i~iwd~-~~~~~~~~~~---h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
++.++.++.+. +.. .|+.-..+.. ... .+..+.+.+++ .++.++.+|.|.-++-
T Consensus 263 ~~~~g~~g~i~-~S~DgG~tW~~~~~~~~~~~-~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 263 VWLAGGAGALL-CSQDGGQTWQQDVDVKKVPS-NFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp EEEEESTTCEE-EESSTTSSCEECGGGTTSSS-CCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred EEEEeCCCeEE-EeCCCCcccEEcCccCCCCC-CeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 66666788773 444 3443333332 123 47788887544 4677778897766543
No 261
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.70 E-value=0.0087 Score=61.02 Aligned_cols=112 Identities=12% Similarity=-0.031 Sum_probs=70.2
Q ss_pred cEEEEEEcCCCCEEE-EEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeC--------
Q 003423 258 SIFRIEWSSCGSKLV-SVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE-------- 326 (821)
Q Consensus 258 ~I~~l~~s~~~~~l~-s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~-------- 326 (821)
...+|+++|+++.|. +-..++.|..+++..... .. . ..+..... ...+++. +++.++...
T Consensus 186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-----~~-~--~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~ 256 (322)
T 2fp8_A 186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-----GT-A--EVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHG 256 (322)
T ss_dssp CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-----TC-E--EEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTS
T ss_pred cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-----Cc-c--ceEEeCCC-CCCeEECCCCCEEEEecCcccccccC
Confidence 346799999998654 446668999999875321 11 0 11111122 5677777 455555444
Q ss_pred --CCeEEEEcCCCceeeEeecccC---CCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 327 --DCTCRVWGSDGKQLKMIKEHIG---RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 327 --dg~i~iwd~~~~~~~~~~~h~~---~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
.+.|..++.+++.+..+....+ ..++.+++ .++++.++...++.|..+++..
T Consensus 257 ~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 257 RVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp CEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 4678888888888887765432 23666666 4566666666778899998853
No 262
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.67 E-value=0.019 Score=57.89 Aligned_cols=235 Identities=8% Similarity=-0.012 Sum_probs=122.3
Q ss_pred cEEeEEeccccCCCCCCccceeeEEEEE-cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCC
Q 003423 67 RLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (821)
Q Consensus 67 ~i~~i~~~~~~~~~~~~~~~~~~~l~~~-g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~ 145 (821)
...++.+++++ .++++- ..+.|..|+.... ....... ......+++.+
T Consensus 33 ~pegia~~~~g-----------~lyv~d~~~~~I~~~d~~g~--------------~~~~~~~---~~~p~gia~~~--- 81 (306)
T 2p4o_A 33 FLENLASAPDG-----------TIFVTNHEVGEIVSITPDGN--------------QQIHATV---EGKVSGLAFTS--- 81 (306)
T ss_dssp CEEEEEECTTS-----------CEEEEETTTTEEEEECTTCC--------------EEEEEEC---SSEEEEEEECT---
T ss_pred CcceEEECCCC-----------CEEEEeCCCCeEEEECCCCc--------------eEEEEeC---CCCceeEEEcC---
Confidence 46788888553 244443 5677777764321 1111122 34688999998
Q ss_pred CCCEEEEEECCC--cEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCC
Q 003423 146 GNRSLAIGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPE 223 (821)
Q Consensus 146 ~~~~l~t~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~ 223 (821)
+++++++....+ .|..+|..+++.......+.......+..+ +++..+++-...+.|.++|.......
T Consensus 82 dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~---~~~~~~v~d~~~g~i~~~d~~~~~~~------- 151 (306)
T 2p4o_A 82 NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPL---SDTQYLTADSYRGAIWLIDVVQPSGS------- 151 (306)
T ss_dssp TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEES---SSSEEEEEETTTTEEEEEETTTTEEE-------
T ss_pred CCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCccccc---CCCcEEEEECCCCeEEEEeCCCCcEe-------
Confidence 888665544332 366667677765332222222122223321 34444555445788888886511000
Q ss_pred CcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEeccc-CcccCCCCceeeec
Q 003423 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL-VSVSDDRSARIWEVRA-EYWKDSDSIEEVGS 301 (821)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l-~s~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~ 301 (821)
.+.. .. .... ....+.-...++| +|+++.| ++-...+.|..+++.. +.. ...
T Consensus 152 ------------v~~~-~~--~~~~-~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~------~~~-- 205 (306)
T 2p4o_A 152 ------------IWLE-HP--MLAR-SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP------GEP-- 205 (306)
T ss_dssp ------------EEEE-CG--GGSC-SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB------CCC--
T ss_pred ------------EEEE-CC--cccc-ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC------Ccc--
Confidence 0000 00 0000 0000111234556 7788755 5556678999999875 221 100
Q ss_pred eEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcCCCceee--EeecccCCCeEEEEEe---cCCCEEEEEeCCC
Q 003423 302 SVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLK--MIKEHIGRGIWRCLYD---SLSSLLVTAGFDS 370 (821)
Q Consensus 302 ~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~~~~~~--~~~~h~~~~i~~l~~~---~~~~~l~tg~~dg 370 (821)
..+. .......+++. ++++++....+.|.+++.+|+... .+..... ..++++|. |+++.|+.....+
T Consensus 206 ~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~-~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 206 EIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVI-GSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCT-TEEEEEECCSTTTTTEEEEEECTT
T ss_pred EEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCCCCEEEEeecccccC-CceEEEEecccCCCCEEEEECCCC
Confidence 1111 11234456666 456556566789999998876533 2332223 58899998 7877777766543
No 263
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.63 E-value=0.06 Score=52.90 Aligned_cols=194 Identities=8% Similarity=-0.073 Sum_probs=111.2
Q ss_pred CcEEEEEEeecCCCCCEEEEE-ECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCcc-CeEEEEEeeCCEEEEEEc
Q 003423 133 HWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE-ALRIASGTIYNEIIVWKV 210 (821)
Q Consensus 133 ~~I~~~~~~~~~~~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~-~~~l~sg~~dg~i~vwd~ 210 (821)
..+.+++++| +++.|..+ ..++.|..++...+.....+... ......+++ +++ +.+.++-...+.|.+++.
T Consensus 36 ~~~~gi~~d~---~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~-~~~p~~ia~---d~~~~~lyv~d~~~~~I~~~~~ 108 (267)
T 1npe_A 36 KVIIGLAFDC---VDKVVYWTDISEPSIGRASLHGGEPTTIIRQD-LGSPEGIAL---DHLGRTIFWTDSQLDRIEVAKM 108 (267)
T ss_dssp EEEEEEEEET---TTTEEEEEETTTTEEEEEESSSCCCEEEECTT-CCCEEEEEE---ETTTTEEEEEETTTTEEEEEET
T ss_pred CcEEEEEEec---CCCEEEEEECCCCEEEEEecCCCCcEEEEECC-CCCccEEEE---EecCCeEEEEECCCCEEEEEEc
Confidence 3578899998 76656555 45678999998765443222211 112334444 243 445555556788988887
Q ss_pred ccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEeccc
Q 003423 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD---DRSARIWEVRA 287 (821)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~---Dg~i~iwd~~~ 287 (821)
... .... ..........+++++|++..|..+.. .+.|..+++..
T Consensus 109 ~g~-------------------------------~~~~--~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg 155 (267)
T 1npe_A 109 DGT-------------------------------QRRV--LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG 155 (267)
T ss_dssp TSC-------------------------------SCEE--EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred CCC-------------------------------CEEE--EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence 610 0111 11112245689999997665544443 36788888764
Q ss_pred CcccCCCCceeeeceEEe-ccceeEEEEEEc--CCEEE-EEeCCCeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEE
Q 003423 288 EYWKDSDSIEEVGSSVLY-GHNARVWDCCLT--DSFII-TAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLL 363 (821)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~-~h~~~i~~v~~~--~~~l~-s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l 363 (821)
... + .+. ........++++ ++.|+ +-...+.|.+++.++.....+..... ....++.. .+.++
T Consensus 156 ~~~------~-----~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~-~P~gi~~d-~~~ly 222 (267)
T 1npe_A 156 TNR------R-----ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY-GKNLY 222 (267)
T ss_dssp CCC------E-----EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE-TTEEE
T ss_pred CCc------E-----EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCC-CceEEEEe-CCEEE
Confidence 322 1 221 222346788887 34554 44566899999997654444332222 35677765 34444
Q ss_pred EEEeCCCcEEEEEcCC
Q 003423 364 VTAGFDSAIKVHQFQA 379 (821)
Q Consensus 364 ~tg~~dg~I~iwd~~~ 379 (821)
++....+.|..+|..+
T Consensus 223 va~~~~~~v~~~d~~~ 238 (267)
T 1npe_A 223 YTDWKTNSVIAMDLAI 238 (267)
T ss_dssp EEETTTTEEEEEETTT
T ss_pred EEECCCCeEEEEeCCC
Confidence 4444568898888853
No 264
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.58 E-value=0.068 Score=59.13 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=35.9
Q ss_pred CCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 327 DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 327 dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
+|.+..||+ +|+.+-+...... +..-.+...+.+++.|+.||.++.+|.++
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~--~~~g~~~tagglvf~g~~dg~l~A~D~~t 516 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLP--LWAGVLATAGNLVFTGTGDGYFKAFDAKS 516 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSC--CCSCCEEETTTEEEEECTTSEEEEEETTT
T ss_pred cceEEEEECCCCCEEEEecCCCC--CcccceEeCCCEEEEECCCCcEEEEECCC
Confidence 688999998 7887766654322 32222333567888899999999999854
No 265
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.50 E-value=0.077 Score=58.69 Aligned_cols=52 Identities=12% Similarity=0.187 Sum_probs=35.2
Q ss_pred CCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 326 EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 326 ~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
.+|.+..||+ +|+.+-+..... +.+.-.+...+.+++.++.||.++.+|.++
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagg~vf~gt~dg~l~A~D~~t 503 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKMERF--AVWGGTMATAGDLVFYGTLDGYLKARDSDT 503 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred CcCeEEEEECCCCCEEeEecCCC--CccCcceEecCCEEEEECCCCeEEEEECCC
Confidence 3578999998 777766654321 122222333567888899999999999854
No 266
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.48 E-value=0.0031 Score=68.06 Aligned_cols=195 Identities=9% Similarity=0.027 Sum_probs=111.9
Q ss_pred CCCEEEEEEC-CCcEEEEEccCCceeEEEccCcceeEEEEeeccCC-ccCeEEEEEee------------------CCEE
Q 003423 146 GNRSLAIGCS-DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDN-LEALRIASGTI------------------YNEI 205 (821)
Q Consensus 146 ~~~~l~t~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s-~~~~~l~sg~~------------------dg~i 205 (821)
||++|.++.. ++.|.+.|+.+.++.+.+.-+...-...+++. + |++.++++++. ++.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~--~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQ--KWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEEC--CSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeee--ecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 7788877665 55699999999998775543332223333332 3 67888887742 3456
Q ss_pred EEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCC-------
Q 003423 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR------- 278 (821)
Q Consensus 206 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg------- 278 (821)
.+.|.. +.+...++.--. .-..++++|+|+++++.+.+.
T Consensus 178 tvID~~---------------------------------t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~ 223 (595)
T 1fwx_A 178 TAVDAD---------------------------------KWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLP 223 (595)
T ss_dssp EEEETT---------------------------------TTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHH
T ss_pred EEEECC---------------------------------CCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchh
Confidence 666665 444444443211 345678899999888777553
Q ss_pred --------eEEEEecccCccc--CC-----CCceeeec---------eEEeccceeEEEEEEc--CCEEE-EEeCCCeEE
Q 003423 279 --------SARIWEVRAEYWK--DS-----DSIEEVGS---------SVLYGHNARVWDCCLT--DSFII-TAGEDCTCR 331 (821)
Q Consensus 279 --------~i~iwd~~~~~~~--~~-----~~~~~~~~---------~~~~~h~~~i~~v~~~--~~~l~-s~~~dg~i~ 331 (821)
.|.+.|....... .. ..+..+.. ..+. -.....++.++ +++++ ++..+.++.
T Consensus 224 ~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~Vs 302 (595)
T 1fwx_A 224 EMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVT 302 (595)
T ss_dssp HHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEE
T ss_pred hccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEE
Confidence 2444443321100 00 00000000 0110 11123456676 35554 455788999
Q ss_pred EEcCCCc-------------eeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 332 VWGSDGK-------------QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 332 iwd~~~~-------------~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
++|++.. ...... .+...+.++|+++|...++...|+.|..||++.
T Consensus 303 Vid~~~~~~~~~~~l~~~~~v~~~v~--vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 303 VLDVTRFDAVFYENADPRSAVVAEPE--LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEEGGGHHHHHHSCCCGGGGEEECCB--CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred EEECcccccccccccCcccceEEEcC--CCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 9998522 223332 233578999999995455666899999999854
No 267
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.36 E-value=0.041 Score=55.92 Aligned_cols=194 Identities=11% Similarity=0.030 Sum_probs=109.0
Q ss_pred cEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccC-------------------cceeEEEEeeccCCc-cC
Q 003423 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP-------------------ERCLLYSMKLWGDNL-EA 193 (821)
Q Consensus 134 ~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~-------------------~~~~~~s~~~~~~s~-~~ 193 (821)
...++++.+ +++++.++..++.|..||..++... .+... .......+++ .+ ++
T Consensus 20 ~p~~i~~d~---~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~---~~~~g 92 (322)
T 2fp8_A 20 APNSFTFDS---TNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISY---NLQNN 92 (322)
T ss_dssp CCCCEECCT---TCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE---ETTTT
T ss_pred CceEEEEcC---CCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEE---cCCCC
Confidence 345688888 8887888888899999988765432 22110 0012344554 23 34
Q ss_pred eEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEE-Eec-CCCcEEEEEEcC-CCCE
Q 003423 194 LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR-LVG-HEGSIFRIEWSS-CGSK 270 (821)
Q Consensus 194 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-h~~~I~~l~~s~-~~~~ 270 (821)
. |+.+...+.|..+|..+. ....+.. ..+ .......+++.+ +|++
T Consensus 93 ~-l~v~d~~~~i~~~d~~~g-------------------------------~~~~~~~~~~~~~~~~p~~i~~d~~~G~l 140 (322)
T 2fp8_A 93 Q-LYIVDCYYHLSVVGSEGG-------------------------------HATQLATSVDGVPFKWLYAVTVDQRTGIV 140 (322)
T ss_dssp E-EEEEETTTEEEEECTTCE-------------------------------ECEEEESEETTEECSCEEEEEECTTTCCE
T ss_pred c-EEEEECCCCEEEEeCCCC-------------------------------EEEEecccCCCCcccccceEEEecCCCEE
Confidence 4 444444455777776510 0011110 111 123478899999 9987
Q ss_pred EEEEeC-----------------CCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC--CEEEEE-eCCCeE
Q 003423 271 LVSVSD-----------------DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITA-GEDCTC 330 (821)
Q Consensus 271 l~s~s~-----------------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~~l~s~-~~dg~i 330 (821)
.++-.. ++.|..+|..+++. ..+...-.....+++++ +.|+.+ ...+.|
T Consensus 141 ~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~-----------~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I 209 (322)
T 2fp8_A 141 YFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET-----------TLLLKELHVPGGAEVSADSSFVLVAEFLSHQI 209 (322)
T ss_dssp EEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE-----------EEEEEEESCCCEEEECTTSSEEEEEEGGGTEE
T ss_pred EEECCcccccccccceehcccCCCceEEEEeCCCCEE-----------EEeccCCccCcceEECCCCCEEEEEeCCCCeE
Confidence 776533 36677787765433 11111112345688883 455544 566899
Q ss_pred EEEcCCCc---eeeEeecccCCCeEEEEEecCCCEEEEEeC----------CCcEEEEEcCC
Q 003423 331 RVWGSDGK---QLKMIKEHIGRGIWRCLYDSLSSLLVTAGF----------DSAIKVHQFQA 379 (821)
Q Consensus 331 ~iwd~~~~---~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~----------dg~I~iwd~~~ 379 (821)
..+++++. ....+....+ ...++++++|++.++... .+.|..+|.++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~g--P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G 269 (322)
T 2fp8_A 210 VKYWLEGPKKGTAEVLVKIPN--PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFG 269 (322)
T ss_dssp EEEESSSTTTTCEEEEEECSS--EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTS
T ss_pred EEEECCCCcCCccceEEeCCC--CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCC
Confidence 99998542 1222222222 678899999986666544 35566666543
No 268
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.33 E-value=0.13 Score=49.65 Aligned_cols=162 Identities=12% Similarity=0.040 Sum_probs=97.9
Q ss_pred eeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE-c
Q 003423 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-G 95 (821)
Q Consensus 18 ~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~-g 95 (821)
..+..|++. |+ ++.+.++.. ++.|...|.+ |+.++++.........+|++.+.+ .++++. +
T Consensus 27 ~~lSGla~~--~~---~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g-----------~~~vs~E~ 89 (255)
T 3qqz_A 27 NNISSLTWS--AQ---SNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDN-----------QFVISDER 89 (255)
T ss_dssp SCEEEEEEE--TT---TTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTT-----------EEEEEETT
T ss_pred cCcceeEEe--CC---CCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCC-----------EEEEEECC
Confidence 468999999 87 344555444 6899999998 999888864332457888887542 343443 4
Q ss_pred CCeEEEEEEeecCCCCCCCCCccccc-cceee-ec--cCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccC---Cc
Q 003423 96 EKRVKLFELNFELSPNSQYQPETCVN-LSLVQ-SL--PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN---SS 168 (821)
Q Consensus 96 ~~~v~i~~~~~~~~~~~~~~~~~~~~-~~~~~-~~--~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~---~~ 168 (821)
++.+.++++..... +. ..... .+ ...+.....+++.| .++.|.++.......+|.+.. ..
T Consensus 90 ~~~l~~~~v~~~~~----------i~~~~~~~~~~~~~~~N~g~EGLA~d~---~~~~L~va~E~~p~~i~~~~g~~~~~ 156 (255)
T 3qqz_A 90 DYAIYVISLTPNSE----------VKILKKIKIPLQESPTNCGFEGLAYSR---QDHTFWFFKEKNPIEVYKVNGLLSSN 156 (255)
T ss_dssp TTEEEEEEECTTCC----------EEEEEEEECCCSSCCCSSCCEEEEEET---TTTEEEEEEESSSEEEEEEESTTCSS
T ss_pred CCcEEEEEcCCCCe----------eeeeeeeccccccccccCCcceEEEeC---CCCEEEEEECcCCceEEEEcccccCC
Confidence 67888888764320 00 01111 11 12345578999999 887777777666666776651 11
Q ss_pred eeEEEcc------CcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcc
Q 003423 169 IILEVHS------PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (821)
Q Consensus 169 ~~~~~~~------~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~ 211 (821)
.+..+.. ....-+-++++.+ ..+.+++.....+.|.++|..
T Consensus 157 ~l~i~~~~~~~~~~~~~d~S~l~~dp--~tg~lliLS~~s~~L~~~d~~ 203 (255)
T 3qqz_A 157 ELHISKDKALQRQFTLDDVSGAEFNQ--QKNTLLVLSHESRALQEVTLV 203 (255)
T ss_dssp CCEEEECHHHHHTCCSSCCCEEEEET--TTTEEEEEETTTTEEEEECTT
T ss_pred ceeeecchhhccccccCCceeEEEcC--CCCeEEEEECCCCeEEEEcCC
Confidence 1111111 0011123455543 356777778888899999877
No 269
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.33 E-value=0.0046 Score=70.21 Aligned_cols=97 Identities=15% Similarity=0.080 Sum_probs=54.5
Q ss_pred eEEEEECCCCeee--eEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEc--CCeEEEEEEeecCCCCCCCCCcccc
Q 003423 45 QVLLYDLEAGTLI--RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG--EKRVKLFELNFELSPNSQYQPETCV 120 (821)
Q Consensus 45 ~i~iwd~~t~~~~--~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g--~~~v~i~~~~~~~~~~~~~~~~~~~ 120 (821)
.+.+||..+++-. ..+........++.++..+ ..+++++| +..+.+||.....
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~-----------g~lyv~GG~~~~~v~~yd~~t~~------------ 276 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN-----------GQIVVTGGNDAKKTSLYDSSSDS------------ 276 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT-----------SCEEEECSSSTTCEEEEEGGGTE------------
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCC-----------CCEEEeCCCCCCceEEecCcCCc------------
Confidence 6899999887642 2222212212223444422 13555555 3578888876442
Q ss_pred ccceeeeccCCCCcEEEEEEeecCCCCCEEEEEE-CC-----CcEEEEEccCCce
Q 003423 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SD-----NSIRVWDISNSSI 169 (821)
Q Consensus 121 ~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~-~d-----~~i~iwd~~~~~~ 169 (821)
+..+..+... .+-.+++..+ ++++++.|+ .+ +.+.+||..+.+-
T Consensus 277 -W~~~~~~~~~-R~~~s~~~~~---dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 277 -WIPGPDMQVA-RGYQSSATMS---DGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp -EEECCCCSSC-CSSCEEEECT---TSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred -eeECCCCCcc-ccccceEEec---CCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 2333333221 2223455667 889888888 34 5799999987654
No 270
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.24 E-value=0.21 Score=50.19 Aligned_cols=209 Identities=11% Similarity=-0.023 Sum_probs=111.5
Q ss_pred ceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeC
Q 003423 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (821)
Q Consensus 123 ~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d 202 (821)
+.+..++.. .....++|.| +++++++-..++.|..||.... ....+.... ....+++ ++++.++++....
T Consensus 23 ~~~~~~p~~-~~pegia~~~---~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~--~p~gia~---~~dG~l~vad~~~ 92 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAP---DGTIFVTNHEVGEIVSITPDGN-QQIHATVEG--KVSGLAF---TSNGDLVATGWNA 92 (306)
T ss_dssp EEEEEECTT-CCEEEEEECT---TSCEEEEETTTTEEEEECTTCC-EEEEEECSS--EEEEEEE---CTTSCEEEEEECT
T ss_pred eEeEeCCCC-CCcceEEECC---CCCEEEEeCCCCeEEEECCCCc-eEEEEeCCC--CceeEEE---cCCCcEEEEeccC
Confidence 444455432 5678899999 8887776667889999987653 333333222 2444555 4667655544332
Q ss_pred C--EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeE
Q 003423 203 N--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280 (821)
Q Consensus 203 g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i 280 (821)
+ .|..++..+. ....+..+ ........++..+++..+++-..++.|
T Consensus 93 ~~~~v~~~d~~~g-------------------------------~~~~~~~~-~~~~~~~g~~~~~~~~~~v~d~~~g~i 140 (306)
T 2p4o_A 93 DSIPVVSLVKSDG-------------------------------TVETLLTL-PDAIFLNGITPLSDTQYLTADSYRGAI 140 (306)
T ss_dssp TSCEEEEEECTTS-------------------------------CEEEEEEC-TTCSCEEEEEESSSSEEEEEETTTTEE
T ss_pred CcceEEEEcCCCC-------------------------------eEEEEEeC-CCccccCcccccCCCcEEEEECCCCeE
Confidence 2 4555554411 11112211 112234556656655555655567888
Q ss_pred EEEecccCcccCCCCceeeec--e--EEeccceeEEEEEEcCCEE-EEEeCCCeEEEEcCC--Cce--eeEeecccCCCe
Q 003423 281 RIWEVRAEYWKDSDSIEEVGS--S--VLYGHNARVWDCCLTDSFI-ITAGEDCTCRVWGSD--GKQ--LKMIKEHIGRGI 351 (821)
Q Consensus 281 ~iwd~~~~~~~~~~~~~~~~~--~--~~~~h~~~i~~v~~~~~~l-~s~~~dg~i~iwd~~--~~~--~~~~~~h~~~~i 351 (821)
..+|...+... +..... . ...+.-.....+...++.| ++-...+.|..++++ ++. ...+... . ..
T Consensus 141 ~~~d~~~~~~~----v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~-~P 214 (306)
T 2p4o_A 141 WLIDVVQPSGS----IWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-T-NI 214 (306)
T ss_dssp EEEETTTTEEE----EEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-C-CC
T ss_pred EEEeCCCCcEe----EEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-C-CC
Confidence 88887643210 000000 0 0000111233444445544 455567899999985 321 1222111 2 24
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 352 WRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 352 ~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
..++++++|++.++....+.|.+++.++
T Consensus 215 ~gi~vd~dG~l~va~~~~~~V~~~~~~G 242 (306)
T 2p4o_A 215 DDFAFDVEGNLYGATHIYNSVVRIAPDR 242 (306)
T ss_dssp SSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred CCeEECCCCCEEEEeCCCCeEEEECCCC
Confidence 5788999998777776778899988653
No 271
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.17 E-value=0.051 Score=61.50 Aligned_cols=111 Identities=13% Similarity=0.132 Sum_probs=65.1
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------eEEEEecccCcccCCCCceeeeceEE-eccceeEEEEEEc--CCEEEEEe
Q 003423 261 RIEWSS-CGSKLVSVSDDR-----------SARIWEVRAEYWKDSDSIEEVGSSVL-YGHNARVWDCCLT--DSFIITAG 325 (821)
Q Consensus 261 ~l~~s~-~~~~l~s~s~Dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~-~~h~~~i~~v~~~--~~~l~s~~ 325 (821)
+.++.+ +++.++.|+.+. .+.+||..+++. . .+ ..+ ..+.....++++. +..++.||
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w-----~-~~--~~~~~~~~~~~~~~~~~~~g~lyv~GG 261 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV-----S-DR--TVTVTKHDMFCPGISMDGNGQIVVTGG 261 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB-----C-CC--EEEECSCCCSSCEEEECTTSCEEEECS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcE-----E-eC--cccCCCCCCccccccCCCCCCEEEeCC
Confidence 556677 888888887643 588999988764 1 11 111 1122222234443 57777777
Q ss_pred -CCCeEEEEcCC-CceeeEeecccCCCeEEEEEecCCCEEEEEe-CC-----CcEEEEEcCC
Q 003423 326 -EDCTCRVWGSD-GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG-FD-----SAIKVHQFQA 379 (821)
Q Consensus 326 -~dg~i~iwd~~-~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~-~d-----g~I~iwd~~~ 379 (821)
.+..+.+||.. ++-...-..+..+.-.+++..+++++++.|| .+ ..+.+||...
T Consensus 262 ~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 262 NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp SSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred CCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 44689999983 3221111112222223556667899999998 44 4688888854
No 272
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.09 E-value=0.32 Score=50.65 Aligned_cols=195 Identities=9% Similarity=-0.098 Sum_probs=109.1
Q ss_pred CcEEEEEEeecCCCCCEEEEE-ECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcc
Q 003423 133 HWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (821)
Q Consensus 133 ~~I~~~~~~~~~~~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~ 211 (821)
..+..++|.+ .+..|..+ ...+.|..++.........+..... ....+++. ...+.+.++-...+.|.+.++.
T Consensus 116 ~~~~gl~~d~---~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~-~p~glavd--~~~g~lY~~d~~~~~I~~~~~d 189 (386)
T 3v65_B 116 ENAIALDFHH---RRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE-SPGGLAVD--WVHDKLYWTDSGTSRIEVANLD 189 (386)
T ss_dssp SCEEEEEEET---TTTEEEEEETTTTEEEEEETTSCCEEEEECSSCS-CCCCEEEE--TTTTEEEEEETTTTEEEECBTT
T ss_pred CccEEEEEec---CCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCC-CccEEEEE--eCCCeEEEEcCCCCeEEEEeCC
Confidence 4588999997 55555544 4567888898876543322221110 01112221 1234455555556677776665
Q ss_pred cCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEE-eCC-CeEEEEecccCc
Q 003423 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV-SDD-RSARIWEVRAEY 289 (821)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~-s~D-g~i~iwd~~~~~ 289 (821)
.......+...-....+|++.|.+..|.-+ ..+ +.|...++....
T Consensus 190 ---------------------------------g~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~ 236 (386)
T 3v65_B 190 ---------------------------------GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 236 (386)
T ss_dssp ---------------------------------SCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred ---------------------------------CCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence 111111222333567899999876655444 334 667777766433
Q ss_pred ccCCCCceeeeceEEeccceeEEEEEEc--CCEE-EEEeCCCeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEE
Q 003423 290 WKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFI-ITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366 (821)
Q Consensus 290 ~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l-~s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg 366 (821)
. . ......-.....++++ +..| ++-...+.|..++++|.....+..........+++. .+.++++-
T Consensus 237 ~------~----~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td 305 (386)
T 3v65_B 237 R------R----IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTD 305 (386)
T ss_dssp C------E----EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEE
T ss_pred c------E----EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEee
Confidence 2 1 1111223345788886 3444 444566789999997765554433222246788883 45666666
Q ss_pred eCCCcEEEEEc
Q 003423 367 GFDSAIKVHQF 377 (821)
Q Consensus 367 ~~dg~I~iwd~ 377 (821)
...+.|..++.
T Consensus 306 ~~~~~V~~~~~ 316 (386)
T 3v65_B 306 WHTKSINSANK 316 (386)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCeEEEEEC
Confidence 67788888873
No 273
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.09 E-value=0.26 Score=48.52 Aligned_cols=187 Identities=9% Similarity=0.087 Sum_probs=120.2
Q ss_pred EEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccC
Q 003423 139 CFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPL 218 (821)
Q Consensus 139 ~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 218 (821)
..+| ..+.+|.-. ..++.++|+++.+.++.+.-++.-.-|. |.+++..-|++. ..|+-|++.+
T Consensus 73 IMnP---~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWk----Wis~~~L~lVT~---taVyHWs~~~------ 135 (365)
T 2xzh_A 73 IMNP---ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWK----WISLNTVALVTD---NAVYHWSMEG------ 135 (365)
T ss_dssp EECS---SSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEE----ECSSSEEEEEES---SEEEEEESST------
T ss_pred eeCC---CccEEEEec-CCeEEEechHHhhhhcceecCCccEEEE----ecCCCeEEEEcC---CcEEEEcccC------
Confidence 3477 888887765 6789999999999998888776543333 224444445555 6799999972
Q ss_pred CCCCCCcccCCCCCCcceeeecccccceeeEEEEecC----CCcEEEEEEcCCCCEEEEEeC-------CCeEEEEeccc
Q 003423 219 LNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH----EGSIFRIEWSSCGSKLVSVSD-------DRSARIWEVRA 287 (821)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~I~~l~~s~~~~~l~s~s~-------Dg~i~iwd~~~ 287 (821)
...+.+.+.-| ...|..-..+++.++++-.+- .|.+.+|....
T Consensus 136 --------------------------~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er 189 (365)
T 2xzh_A 136 --------------------------ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 189 (365)
T ss_dssp --------------------------TCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT
T ss_pred --------------------------CCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc
Confidence 12233333333 345777777888887654332 36788998887
Q ss_pred CcccCCCCceeeeceEEeccceeEEEEEEcC----CEEEEEeCC----CeEEEEcCC----Cc------eeeEeecc--c
Q 003423 288 EYWKDSDSIEEVGSSVLYGHNARVWDCCLTD----SFIITAGED----CTCRVWGSD----GK------QLKMIKEH--I 347 (821)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~----~~l~s~~~d----g~i~iwd~~----~~------~~~~~~~h--~ 347 (821)
+.. ..+.||.+.-..+...+ ..|++-... +.+++-++. +. .+..+... .
T Consensus 190 ~~s-----------Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~ 258 (365)
T 2xzh_A 190 KVS-----------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ 258 (365)
T ss_dssp TEE-----------EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCT
T ss_pred ccc-----------ceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCcccc
Confidence 654 68888877665555542 233333222 588888872 21 11111111 1
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 348 GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 348 ~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
..---++.+++.-..++.-..-|.|.+||+++
T Consensus 259 ~DFPVamqvs~kygviyviTK~G~ihlyDleT 290 (365)
T 2xzh_A 259 NDFPVAMQISEKHDVVFLITKYGYIHLYDLET 290 (365)
T ss_dssp TCCEEEEEEETTTTEEEEEETTSEEEEEETTT
T ss_pred CCceEEEEecccCCEEEEEeCCcEEEEEEccc
Confidence 11244788888888999999999999999965
No 274
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.05 E-value=0.03 Score=64.41 Aligned_cols=199 Identities=12% Similarity=0.039 Sum_probs=106.9
Q ss_pred CCCC-cEEEEEEe-ecCCCCCEEEEEEC-CC----cEEEEEccCC-ceeE-EEccCcceeEEEEeeccCCccCeEEEEEe
Q 003423 130 RLSH-WVFDVCFL-KVCNGNRSLAIGCS-DN----SIRVWDISNS-SIIL-EVHSPERCLLYSMKLWGDNLEALRIASGT 200 (821)
Q Consensus 130 ~h~~-~I~~~~~~-~~~~~~~~l~t~~~-d~----~i~iwd~~~~-~~~~-~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (821)
+|.- .+...+|| | ||++||-+.. +| .|+++|+.++ +.+. .+........| ++|+..|+...
T Consensus 170 ~~~~~~~~~~~~S~P---DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~W-------spDg~~l~y~~ 239 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPP---EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVW-------GPDHTSLFYVT 239 (751)
T ss_dssp TCSCCEEEEEEECTT---TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEE-------CSSTTEEEEEE
T ss_pred CCCeEEEeeeEecCC---CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEE-------ecCCCEEEEEE
Confidence 3443 68889999 9 9998885543 23 4999999988 6321 11111112222 47887776665
Q ss_pred eC-----CEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEe
Q 003423 201 IY-----NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (821)
Q Consensus 201 ~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s 275 (821)
.+ ..|.++++.+. ......+..- .+......+.|+|||++|+..+
T Consensus 240 ~d~~~~~~~v~~~~lgt~-----------------------------~~~~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~ 289 (751)
T 2xe4_A 240 KDETLRENKVWRHVMGKL-----------------------------QSEDVCLYEE-HNPLFSAFMYKAADTNTLCIGS 289 (751)
T ss_dssp ECTTCCEEEEEEEETTSC-----------------------------GGGCEEEEEC-CCTTCEEEEEECTTSSEEEEEE
T ss_pred ECCCCCCCEEEEEECCCC-----------------------------chhcEEEEec-CCCceEEEEEECCCCCEEEEEe
Confidence 54 35667776511 0011122221 2334567889999999887555
Q ss_pred C---CCeEEEEecccCcccCCCCc--eeeeceEEeccceeEEEEEEc-CCEEE-EEeCC--C--eEEEEcCCC-ceeeE-
Q 003423 276 D---DRSARIWEVRAEYWKDSDSI--EEVGSSVLYGHNARVWDCCLT-DSFII-TAGED--C--TCRVWGSDG-KQLKM- 342 (821)
Q Consensus 276 ~---Dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~h~~~i~~v~~~-~~~l~-s~~~d--g--~i~iwd~~~-~~~~~- 342 (821)
. ...|.++|+.++... . . ..........+++.|+ ++.|+ ....+ + .|..++++. .....
T Consensus 290 ~~~~~~~l~~~d~~~~~~~----~~~~----~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~ 361 (751)
T 2xe4_A 290 QSPETAEVHLLDLRKGNAH----NTLE----IVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHV 361 (751)
T ss_dssp ECSSCEEEEEEESSSCTTC----CCEE----ESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCE
T ss_pred cCCCCceEEEEECCCCCCC----ceeE----EeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceee
Confidence 2 346778888764210 1 1 1222334556777754 55444 43333 2 555566642 23233
Q ss_pred eecccCC-CeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 343 IKEHIGR-GIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 343 ~~~h~~~-~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
+..+... .+..+.+. .+.++++...++..++|-+
T Consensus 362 li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 362 LVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp EECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEE
T ss_pred EECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 3333331 24445544 2345667777786655543
No 275
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.02 E-value=0.35 Score=48.96 Aligned_cols=194 Identities=11% Similarity=0.046 Sum_probs=99.1
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEeccc-CcccCCCCceeeeceEEeccceeEEEEEEc-CCEEEEEeCCCeE-EE
Q 003423 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA-EYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTC-RV 332 (821)
Q Consensus 256 ~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~l~s~~~dg~i-~i 332 (821)
.+.+..|.+.++++.++.+ .++.| |...+ ++. -+ ....++...+..+.+. +..++..+.+|.+ +-
T Consensus 121 ~~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG~t-----W~----~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S 188 (327)
T 2xbg_A 121 PGSPRLIKALGNGSAEMIT-NVGAI--YRTKDSGKN-----WQ----ALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYST 188 (327)
T ss_dssp SSCEEEEEEEETTEEEEEE-TTCCE--EEESSTTSS-----EE----EEECSCCCCEEEEEECTTSCEEEEETTSSEEEE
T ss_pred CCCeEEEEEECCCCEEEEe-CCccE--EEEcCCCCC-----CE----EeecCCCcceEEEEEcCCCcEEEEECCCcEEEE
Confidence 3456778777666666655 45543 33333 211 11 1223445568888887 3444445555544 44
Q ss_pred EcCCCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-CcCCCcccCCccccccCCCcceEEeecCCcccc
Q 003423 333 WGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ-AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQ 411 (821)
Q Consensus 333 wd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (821)
+|-.++.-..+.......+..+++.++++.+ .++.+|.+.+.+.+ +..-.. +..+..
T Consensus 189 ~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~------------------~~~~~~--- 246 (327)
T 2xbg_A 189 WEPGQTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGE------------------LLSPLR--- 246 (327)
T ss_dssp ECTTCSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECC------------------CBCTTS---
T ss_pred eCCCCCceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEe------------------ccCCcc---
Confidence 4432433333322222358899999888755 45567877766422 110000 000000
Q ss_pred eeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeeecc-CCcceEEEeccCCCCCCCCCCCcEEEEe
Q 003423 412 IRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVS-EGMPIICMDLLSNEPKYPCGIDDWVALG 490 (821)
Q Consensus 412 ~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~s~~~~~~l~~g 490 (821)
.....+..+++.+++.+++++.+|.++ ........|..+.... ....+..+.+.. ...+++.
T Consensus 247 -----~~~~~~~~v~~~~~~~~~~~g~~g~i~---~S~DgG~tW~~~~~~~~~~~~~~~v~~~~---------~~~~~~~ 309 (327)
T 2xbg_A 247 -----RNSVGFLDLAYRTPNEVWLAGGAGALL---CSQDGGQTWQQDVDVKKVPSNFYKILFFS---------PDQGFIL 309 (327)
T ss_dssp -----SCCSCEEEEEESSSSCEEEEESTTCEE---EESSTTSSCEECGGGTTSSSCCCEEEEEE---------TTEEEEE
T ss_pred -----cCCcceEEEEecCCCEEEEEeCCCeEE---EeCCCCcccEEcCccCCCCCCeEEEEEEC---------CCceEEE
Confidence 011237788888888888888888764 2223334577654321 123344444422 2345555
Q ss_pred cCCccEEEEE
Q 003423 491 DGKGNMTIVR 500 (821)
Q Consensus 491 ~~~g~i~i~~ 500 (821)
+.+|.|.-++
T Consensus 310 G~~G~i~~~~ 319 (327)
T 2xbg_A 310 GQKGILLRYV 319 (327)
T ss_dssp CSTTEEEEEC
T ss_pred cCCceEEEEc
Confidence 5677655443
No 276
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.01 E-value=0.35 Score=48.72 Aligned_cols=236 Identities=8% Similarity=-0.059 Sum_probs=124.5
Q ss_pred eEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEE-EcCCeEEEEEEeecCCCCCCCC
Q 003423 37 FLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQ 115 (821)
Q Consensus 37 ~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~-~g~~~v~i~~~~~~~~~~~~~~ 115 (821)
+|+.+....|+..|+.+.+....+.. ...+.++.+.+.. ..++.+ ...+.|..+++..... .
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~~--~~~p~g~~~d~~~----------~~ly~~D~~~~~I~~~~~~g~~~--~--- 65 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIPN--LRNVVALDTEVAS----------NRIYWSDLSQRMICSTQLDRAHG--V--- 65 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEECS--CSSEEEEEEETTT----------TEEEEEETTTTEEEEEEC-----------
T ss_pred EEEEECCCeEEEEECCCcceEehhcC--CCceEEEEEEeCC----------CEEEEEECCCCcEEEEECCCCCC--C---
Confidence 56667777899999998876555443 3358899998541 123333 3468888888764100 0
Q ss_pred CccccccceeeeccCCCCcEEEEEEeecCCCCCEE-EEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCc-cC
Q 003423 116 PETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL-AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-EA 193 (821)
Q Consensus 116 ~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l-~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~-~~ 193 (821)
......+...-.....+++.+ .+..| ++-...+.|.+.+.........+... ......+++ +| ++
T Consensus 66 ------~~~~~~~~~~~~~p~glavd~---~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~-~~~P~~iav---dp~~g 132 (316)
T 1ijq_A 66 ------SSYDTVISRDIQAPDGLAVDW---IHSNIYWTDSVLGTVSVADTKGVKRKTLFREN-GSKPRAIVV---DPVHG 132 (316)
T ss_dssp --------CEEEECSSCSCCCEEEEET---TTTEEEEEETTTTEEEEEETTSSSEEEEEECT-TCCEEEEEE---ETTTT
T ss_pred ------cccEEEEeCCCCCcCEEEEee---cCCeEEEEECCCCEEEEEeCCCCceEEEEECC-CCCcceEEe---CCCCC
Confidence 001111222223457788886 55444 44456788999997654332222211 111233444 23 34
Q ss_pred eEEEEEeeC-CEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE-ecCCCcEEEEEEcCCCCEE
Q 003423 194 LRIASGTIY-NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGSKL 271 (821)
Q Consensus 194 ~~l~sg~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~I~~l~~s~~~~~l 271 (821)
.+.++.... +.|...++.. + ....+ ...-...++|+++|++..|
T Consensus 133 ~ly~~d~~~~~~I~~~~~dG--------------------------------~--~~~~~~~~~~~~P~gla~d~~~~~l 178 (316)
T 1ijq_A 133 FMYWTDWGTPAKIKKGGLNG--------------------------------V--DIYSLVTENIQWPNGITLDLLSGRL 178 (316)
T ss_dssp EEEEEECSSSCEEEEEETTS--------------------------------C--CEEEEECSSCSCEEEEEEETTTTEE
T ss_pred EEEEEccCCCCeEEEEcCCC--------------------------------C--CeEEEEECCCCCceEEEEeccCCEE
Confidence 334443332 6777777651 1 11111 2233567899999877666
Q ss_pred E-EEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC-CEEEEEeCCCeEEEEcC-CCceeeEee
Q 003423 272 V-SVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-SFIITAGEDCTCRVWGS-DGKQLKMIK 344 (821)
Q Consensus 272 ~-s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~l~s~~~dg~i~iwd~-~~~~~~~~~ 344 (821)
. +-+..+.|..+|+..... +.+ ............+++.+ ..+++-...+.|..++. +|+.+..+.
T Consensus 179 Y~~D~~~~~I~~~d~dg~~~------~~~--~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 179 YWVDSKLHSISSIDVNGGNR------KTI--LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEETTTTEEEEEETTSCSC------EEE--EECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEECCCCeEEEEecCCCce------EEE--eecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 4 444567899999875322 111 01101122345566654 44445556677777776 565555443
No 277
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.94 E-value=0.45 Score=48.71 Aligned_cols=194 Identities=9% Similarity=-0.091 Sum_probs=110.8
Q ss_pred CcEEEEEEeecCCCCCEEEEE-ECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcc
Q 003423 133 HWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (821)
Q Consensus 133 ~~I~~~~~~~~~~~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~ 211 (821)
..+..++|.+ ..+.|..+ ...+.|..+++........+..... ....+++. ..++.+.++-...+.|.+.+..
T Consensus 73 ~~~~~l~~d~---~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~-~p~glavd--~~~g~ly~~d~~~~~I~~~~~d 146 (349)
T 3v64_C 73 ENAIALDFHH---RRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE-SPGGLAVD--WVHDKLYWTDSGTSRIEVANLD 146 (349)
T ss_dssp SCEEEEEEET---TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-CCCEEEEE--TTTTEEEEEETTTTEEEEEETT
T ss_pred CceEEEEEec---cccEEEEEeccCCceEEEecCCCCceEEEeCCCC-CccEEEEe--cCCCeEEEEcCCCCeEEEEcCC
Confidence 4578999997 55555544 4567898898876543322221111 11123331 1245555665666788888876
Q ss_pred cCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEE-EEEeCC-CeEEEEecccCc
Q 003423 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL-VSVSDD-RSARIWEVRAEY 289 (821)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l-~s~s~D-g~i~iwd~~~~~ 289 (821)
. ......+...-....+|++.|.+..| .+-..+ +.|...++....
T Consensus 147 G---------------------------------~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~ 193 (349)
T 3v64_C 147 G---------------------------------AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 193 (349)
T ss_dssp S---------------------------------CSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred C---------------------------------CceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC
Confidence 1 11111222334567899999966555 444444 677777776533
Q ss_pred ccCCCCceeeeceEEe-ccceeEEEEEEc--CCEEE-EEeCCCeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEE
Q 003423 290 WKDSDSIEEVGSSVLY-GHNARVWDCCLT--DSFII-TAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVT 365 (821)
Q Consensus 290 ~~~~~~~~~~~~~~~~-~h~~~i~~v~~~--~~~l~-s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~t 365 (821)
. ..+. ..-.....++++ +..|+ +-...+.|..++++|.....+..........+++. .+.+.++
T Consensus 194 ~-----------~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~t 261 (349)
T 3v64_C 194 R-----------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWT 261 (349)
T ss_dssp C-----------EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEE
T ss_pred c-----------EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEe
Confidence 2 1221 122345788886 35554 44556789999997765554432222246788883 4556666
Q ss_pred EeCCCcEEEEEc
Q 003423 366 AGFDSAIKVHQF 377 (821)
Q Consensus 366 g~~dg~I~iwd~ 377 (821)
-...+.|..++.
T Consensus 262 d~~~~~V~~~~~ 273 (349)
T 3v64_C 262 DWHTKSINSANK 273 (349)
T ss_dssp ETTTTEEEEEET
T ss_pred cCCCCeEEEEEc
Confidence 666778887773
No 278
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.93 E-value=0.45 Score=48.67 Aligned_cols=177 Identities=11% Similarity=-0.032 Sum_probs=103.1
Q ss_pred CCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcc
Q 003423 156 DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (821)
Q Consensus 156 d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (821)
.+.|+..++........+..... ...+++. ..++.+.++-...+.|..+++.
T Consensus 52 ~~~I~~i~~~g~~~~~~~~~~~~--~~~l~~d--~~~~~ly~~D~~~~~I~r~~~~------------------------ 103 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLNNLEN--AIALDFH--HRRELVFWSDVTLDRILRANLN------------------------ 103 (349)
T ss_dssp BSCEEEECTTSCCEEEEECSCSC--EEEEEEE--TTTTEEEEEETTTTEEEEEETT------------------------
T ss_pred ccceEEEeCCCCeeEEeecCCCc--eEEEEEe--ccccEEEEEeccCCceEEEecC------------------------
Confidence 45688888766544333333222 3344442 1244555555567888888877
Q ss_pred eeeecccccceeeEEEEecCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEE
Q 003423 236 CFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC 314 (821)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v 314 (821)
.......+........++++.+.+. +.++-...+.|.+.++..... . ......-.....+
T Consensus 104 ---------g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~------~----~l~~~~l~~P~~i 164 (349)
T 3v64_C 104 ---------GSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR------K----VLLWQSLEKPRAI 164 (349)
T ss_dssp ---------SCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC------E----EEECTTCSCEEEE
T ss_pred ---------CCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce------E----EEEeCCCCCcceE
Confidence 1111111222234457899987554 446666678899998875432 1 1222223445778
Q ss_pred EEc--CCEEE-EEeCC-CeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCC
Q 003423 315 CLT--DSFII-TAGED-CTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG-FDSAIKVHQFQA 379 (821)
Q Consensus 315 ~~~--~~~l~-s~~~d-g~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~-~dg~I~iwd~~~ 379 (821)
++. +..|+ +-... +.|...+++|.....+..........++++|++..|+.+. ..+.|..+++++
T Consensus 165 avdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 165 ALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp EEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 887 34444 44444 7888888887666555332222467999998776665554 566788888865
No 279
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.93 E-value=0.41 Score=48.17 Aligned_cols=236 Identities=14% Similarity=-0.020 Sum_probs=122.2
Q ss_pred cceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEE-EcCCeEEEEEEeecCCCCCC
Q 003423 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQ 113 (821)
Q Consensus 35 ~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~-~g~~~v~i~~~~~~~~~~~~ 113 (821)
..+|+.+....|+.+|+........+.........++.|.+.. ..++.+ ...+.|..+++....
T Consensus 4 ~p~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~----------~~lyw~D~~~~~I~r~~~~g~~----- 68 (318)
T 3sov_A 4 APLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSH----------GLIYWSDVSEEAIKRTEFNKTE----- 68 (318)
T ss_dssp CCEEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGG----------TEEEEEETTTTEEEEEETTSSS-----
T ss_pred ccEEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCC----------CEEEEEECCCCcEEEEEccCCC-----
Confidence 3577777788999999987642222222222346788887531 122222 345777777665321
Q ss_pred CCCccccccceeeeccCCCCcEEEEEEeecCCCCCEE-EEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCcc
Q 003423 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL-AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (821)
Q Consensus 114 ~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l-~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~ 192 (821)
.....+...-.....+++.+ .+..| ++-...+.|.+.+...... ..+..........+++ .+.
T Consensus 69 ---------~~~~~~~~~l~~p~glavd~---~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~~~~P~giav---dp~ 132 (318)
T 3sov_A 69 ---------SVQNVVVSGLLSPDGLACDW---LGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIAL---DPS 132 (318)
T ss_dssp ---------CCCEEEEECCSCCCEEEEET---TTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEE---EGG
T ss_pred ---------ceEEEEcCCCCCccEEEEEc---CCCeEEEEECCCCEEEEEECCCCcE-EEEEeCCCCCccEEEE---eCC
Confidence 00011111113356788876 44444 4444567899999765432 2222111111233333 233
Q ss_pred CeEEEEEe--eCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCE
Q 003423 193 ALRIASGT--IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK 270 (821)
Q Consensus 193 ~~~l~sg~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~ 270 (821)
+..|+... ..+.|...++.. +. ........-..-++|+++|++..
T Consensus 133 ~g~ly~td~~~~~~I~r~~~dG--------------------------------~~-~~~~~~~~l~~Pnglavd~~~~~ 179 (318)
T 3sov_A 133 SGFMYWTDWGEVPKIERAGMDG--------------------------------SS-RFIIINSEIYWPNGLTLDYEEQK 179 (318)
T ss_dssp GTEEEEEECSSSCEEEEEETTS--------------------------------CS-CEEEECSSCSCEEEEEEETTTTE
T ss_pred CCEEEEEecCCCCEEEEEEcCC--------------------------------CC-eEEEEECCCCCccEEEEeccCCE
Confidence 33333333 246777777651 11 11111122345689999997666
Q ss_pred EE-EEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc-CCEEEEEeCCCeEEEEcC-CCceeeEee
Q 003423 271 LV-SVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIK 344 (821)
Q Consensus 271 l~-s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~l~s~~~dg~i~iwd~-~~~~~~~~~ 344 (821)
|. +=+..+.|..+|+..... + ....+.......+++. +..+++-...+.|..++. +|+....+.
T Consensus 180 lY~aD~~~~~I~~~d~dG~~~------~----~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 180 LYWADAKLNFIHKSNLDGTNR------Q----AVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp EEEEETTTTEEEEEETTSCSC------E----EEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEEECCCCEEEEEcCCCCce------E----EEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 54 445568899999865332 1 1122223344566655 444555556677777777 566555544
No 280
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.84 E-value=0.54 Score=48.88 Aligned_cols=183 Identities=11% Similarity=-0.023 Sum_probs=104.9
Q ss_pred EEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccC
Q 003423 149 SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAH 228 (821)
Q Consensus 149 ~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 228 (821)
+|+.+ ..+.|+..++........+..... ...+++. ..++.+.++-...+.|..++..
T Consensus 89 ~l~~~-~~~~I~~i~~~~~~~~~~~~~~~~--~~gl~~d--~~~~~ly~~D~~~~~I~r~~~~----------------- 146 (386)
T 3v65_B 89 VLLFA-NRIDIRQVLPHRSEYTLLLNNLEN--AIALDFH--HRRELVFWSDVTLDRILRANLN----------------- 146 (386)
T ss_dssp EEEEE-CBSCEEEECTTSCCCEEEECSCSC--EEEEEEE--TTTTEEEEEETTTTEEEEEETT-----------------
T ss_pred eeEee-cCccceeeccCCCcEEEEecCCCc--cEEEEEe--cCCCeEEEEeCCCCcEEEEecC-----------------
Confidence 34433 346788888876654433333222 3344442 1245555555567888888877
Q ss_pred CCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEecccCcccCCCCceeeeceEEecc
Q 003423 229 GSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK-LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH 307 (821)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~-l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h 307 (821)
.......+........++++.+.+.. .++-...+.|.+.++..... . ......
T Consensus 147 ----------------g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~------~----~l~~~~ 200 (386)
T 3v65_B 147 ----------------GSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR------K----VLLWQS 200 (386)
T ss_dssp ----------------SCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC------E----EEECSS
T ss_pred ----------------CCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce------E----EeecCC
Confidence 11111122222334577899875554 45556677888888765432 1 122222
Q ss_pred ceeEEEEEEc--CCEEEEE-eCC-CeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCC
Q 003423 308 NARVWDCCLT--DSFIITA-GED-CTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG-FDSAIKVHQFQA 379 (821)
Q Consensus 308 ~~~i~~v~~~--~~~l~s~-~~d-g~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~-~dg~I~iwd~~~ 379 (821)
-.....+++. +..|+.+ ... +.|...+++|.....+....-.....|+++|++..|+.+. ..+.|..+++++
T Consensus 201 l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 201 LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred CCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 3456778877 3444444 344 6888888887766555432222467899998766665554 556788888764
No 281
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.84 E-value=0.65 Score=49.07 Aligned_cols=200 Identities=12% Similarity=0.134 Sum_probs=103.7
Q ss_pred CCCcEEEEEEeecCCCCCEEEEEECC-C----cEEEEEccCCcee--EEEccCcceeEEEEeeccCCc-cCeEEEEEeeC
Q 003423 131 LSHWVFDVCFLKVCNGNRSLAIGCSD-N----SIRVWDISNSSII--LEVHSPERCLLYSMKLWGDNL-EALRIASGTIY 202 (821)
Q Consensus 131 h~~~I~~~~~~~~~~~~~~l~t~~~d-~----~i~iwd~~~~~~~--~~~~~~~~~~~~s~~~~~~s~-~~~~l~sg~~d 202 (821)
.......++|++ +++.|.++... + .+...+ ..+... ..+..... ...+++ ++ ++.+.++-...
T Consensus 177 ~~~~P~~ia~d~---~G~~lyvad~~~~~~~~~v~~~~-~~g~~~~~~~l~~~~~--p~giav---dp~~g~lyv~d~~~ 247 (430)
T 3tc9_A 177 GLSKVRTICWTH---EADSMIITNDQNNNDRPNNYILT-RESGFKVITELTKGQN--CNGAET---HPINGELYFNSWNA 247 (430)
T ss_dssp CCSCEEEEEECT---TSSEEEEEECCSCTTSEEEEEEE-GGGTSCSEEEEEECSS--CCCEEE---CTTTCCEEEEETTT
T ss_pred CCCCcceEEEeC---CCCEEEEEeCCCCcccceEEEEe-CCCceeeeeeeccCCC--ceEEEE---eCCCCEEEEEECCC
Confidence 345688999999 99866666542 2 233333 333221 12211000 112222 35 56666666677
Q ss_pred CEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCE-EEEEeCCCeEE
Q 003423 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK-LVSVSDDRSAR 281 (821)
Q Consensus 203 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~-l~s~s~Dg~i~ 281 (821)
+.|..++.... ....+... +....-.+|+|+|++++ +++-...+.|.
T Consensus 248 ~~V~~~~~~~~-------------------------------~~~~~~~~-~~~~~P~gia~~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 248 GQVFRYDFTTQ-------------------------------ETTPLFTI-QDSGWEFHIQFHPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp TEEEEEETTTT-------------------------------EEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred CEEEEEECCCC-------------------------------cEEEEEEc-CCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence 88988887610 11112222 12245678999999994 55556678899
Q ss_pred EEecccCcccCCCCceeeeceEEecc---------------ceeEE-EEEEc----------CCEEEEEeCCCeEEEEcC
Q 003423 282 IWEVRAEYWKDSDSIEEVGSSVLYGH---------------NARVW-DCCLT----------DSFIITAGEDCTCRVWGS 335 (821)
Q Consensus 282 iwd~~~~~~~~~~~~~~~~~~~~~~h---------------~~~i~-~v~~~----------~~~l~s~~~dg~i~iwd~ 335 (821)
.++....... .... ..+.+. -.... .++.. +.++++-...+.|+.++.
T Consensus 296 ~~~~d~~~~~----~~~~--~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~ 369 (430)
T 3tc9_A 296 RSDYDWKTKR----LTTP--YIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP 369 (430)
T ss_dssp EEEEETTTTE----ECCC--EEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT
T ss_pred EEeCCccccc----ccce--EEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC
Confidence 9887642100 0000 011110 00122 34432 234444445678888887
Q ss_pred CCceeeEeec----c----cC--------CCeEEEEEecC-CCEEEEEeCCCcEEEEEc
Q 003423 336 DGKQLKMIKE----H----IG--------RGIWRCLYDSL-SSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 336 ~~~~~~~~~~----h----~~--------~~i~~l~~~~~-~~~l~tg~~dg~I~iwd~ 377 (821)
+|+....... . .+ ...+.++++++ +.++++-..+..|+.+++
T Consensus 370 ~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 370 QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 7743332211 0 00 13678999995 555555556677887765
No 282
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.76 E-value=0.41 Score=48.04 Aligned_cols=191 Identities=14% Similarity=0.170 Sum_probs=109.5
Q ss_pred CCCEEEEEECCCcEEEEEccCCceeEEEccCc-cee--EEEEeeccCCccCe---EEEEEee---CCEEEEEEcccCCcc
Q 003423 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPE-RCL--LYSMKLWGDNLEAL---RIASGTI---YNEIIVWKVDWEHVA 216 (821)
Q Consensus 146 ~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-~~~--~~s~~~~~~s~~~~---~l~sg~~---dg~i~vwd~~~~~~~ 216 (821)
...+++....++-+.+||+ +|+.++.+.... +.+ .+.+.+ .+. ++++... +++|.+|++...
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l-----~g~~~dla~as~R~~~~n~l~vf~iDp~--- 109 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPL-----NGKKVDIAAASNRSEGKNTIEIYAIDGK--- 109 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEE-----TTEEEEEEEEEECSTTCCEEEEEEECTT---
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEeccccc-----CCceEeEEEEeCCCCCCCeEEEEEECCC---
Confidence 4556666677788999999 889888886422 222 222221 122 3333333 589999987500
Q ss_pred cCCCCCCCcccCCCCCCcceeeecccccceeeEEEEe------cCC-CcEEEEEE--cCC-CC-EEEEEeCCCeEEEEec
Q 003423 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV------GHE-GSIFRIEW--SSC-GS-KLVSVSDDRSARIWEV 285 (821)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~-~~I~~l~~--s~~-~~-~l~s~s~Dg~i~iwd~ 285 (821)
. ..+..+. +.. ..+.++++ +|. ++ +++....+|.+..|++
T Consensus 110 ----------------------------~-~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l 160 (355)
T 3amr_A 110 ----------------------------N-GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYEL 160 (355)
T ss_dssp ----------------------------T-CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEE
T ss_pred ----------------------------C-CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEE
Confidence 0 0111111 111 45677887 774 44 6788888999999998
Q ss_pred ccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcCC------CceeeEee-cccCCCeEEEEE
Q 003423 286 RAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSD------GKQLKMIK-EHIGRGIWRCLY 356 (821)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~------~~~~~~~~-~h~~~~i~~l~~ 356 (821)
...... ....+.+ .. ....+.+-.+... ...|+.+-++.-|..++.+ ++.+..+. ++-...+..|++
T Consensus 161 ~~~~~g-~~~~~lV--R~-f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai 236 (355)
T 3amr_A 161 KADKNG-YISGKKV--RA-FKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTI 236 (355)
T ss_dssp EECTTS-CEEEEEE--EE-EECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEE
T ss_pred EeCCCC-cccceEE--EE-ecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEE
Confidence 542110 0001222 12 2223456677776 4799999999665555543 23444432 222224788888
Q ss_pred e--cCCC-EEEEEe-CCCcEEEEEcC
Q 003423 357 D--SLSS-LLVTAG-FDSAIKVHQFQ 378 (821)
Q Consensus 357 ~--~~~~-~l~tg~-~dg~I~iwd~~ 378 (821)
- ++++ +|++++ .+.+..+||.+
T Consensus 237 ~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 237 YYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EecCCCCEEEEEEcCCCCEEEEEECC
Confidence 4 4555 565555 67799999985
No 283
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.62 E-value=0.87 Score=47.56 Aligned_cols=224 Identities=8% Similarity=-0.103 Sum_probs=124.8
Q ss_pred eEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEE-ECCCcEEEEEccCC
Q 003423 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNS 167 (821)
Q Consensus 89 ~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~-~~d~~i~iwd~~~~ 167 (821)
..++......|+..++.... ... +......+..++|++ .+..|..+ ...+.|..+++...
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~-------------~~~---~~~~~~~~~~l~~d~---~~~~lywsD~~~~~I~~~~~~g~ 144 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSE-------------YTS---LIPNLRNVVALDTEV---ASNRIYWSDLSQRMICSTQLDRA 144 (400)
T ss_dssp CEEEEEETTEEEEECTTSCS-------------CEE---EECSCSCEEEEEEET---TTTEEEEEETTTTEEEEEEC---
T ss_pred ceeEEeccceeEEEccCCcc-------------eeE---eccccCcceEEeeee---ccCceEEEecCCCeEEEEEcccC
Confidence 45666667888888776432 111 122345688999998 66655555 45678888887652
Q ss_pred c---eeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccccc
Q 003423 168 S---IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244 (821)
Q Consensus 168 ~---~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (821)
. ....+..........+++.+ ..+.+.++-...+.|.+.++.
T Consensus 145 ~~~~~~~~~~~~~~~~p~glavD~--~~~~lY~~d~~~~~I~~~~~~--------------------------------- 189 (400)
T 3p5b_L 145 HGVSSYDTVISRDIQAPDGLAVDW--IHSNIYWTDSVLGTVSVADTK--------------------------------- 189 (400)
T ss_dssp ---CCCEEEECSSCSCEEEEEEET--TTTEEEEEETTTTEEEEECTT---------------------------------
T ss_pred CCCCcceEEEeCCCCCcccEEEEe--cCCceEEEECCCCeEEEEeCC---------------------------------
Confidence 1 11222221111223344321 245555555566778777766
Q ss_pred ceeeEEEEecCCCcEEEEEEcCCCCEEEEEe-C-CCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCE
Q 003423 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS-D-DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSF 320 (821)
Q Consensus 245 ~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s-~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~ 320 (821)
.......+...-....+|++.|.+.+|+-.. . .+.|...++..... . ......-.....++++ ...
T Consensus 190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~------~----~~~~~~l~~P~glavd~~~~~ 259 (400)
T 3p5b_L 190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------Y----SLVTENIQWPNGITLDLLSGR 259 (400)
T ss_dssp TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC------E----EEECSSCSCEEEEEEETTTTE
T ss_pred CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc------E----EEEECCCCceEEEEEEeCCCE
Confidence 1111222223344578999999766655443 2 36777777765432 1 1112222456788887 455
Q ss_pred EEEE-eCCCeEEEEcCCCceeeEeeccc--CCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 321 IITA-GEDCTCRVWGSDGKQLKMIKEHI--GRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 321 l~s~-~~dg~i~iwd~~~~~~~~~~~h~--~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
|+.+ ...+.|...+++|.....+.... -.....+++. .+.++++-...+.|..++.
T Consensus 260 lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~ 318 (400)
T 3p5b_L 260 LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANR 318 (400)
T ss_dssp EEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEES
T ss_pred EEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEc
Confidence 5555 45678999999776655553321 1135677774 3456666667788888884
No 284
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.60 E-value=0.93 Score=47.88 Aligned_cols=110 Identities=11% Similarity=0.080 Sum_probs=64.8
Q ss_pred EEEEEEcCCCCEE-EEEeCCCeEEEEeccc--CcccCCCCceeeeceEEecc---------------ceeEEEEEE----
Q 003423 259 IFRIEWSSCGSKL-VSVSDDRSARIWEVRA--EYWKDSDSIEEVGSSVLYGH---------------NARVWDCCL---- 316 (821)
Q Consensus 259 I~~l~~s~~~~~l-~s~s~Dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~h---------------~~~i~~v~~---- 316 (821)
-..|+|+|++++| ++-...+.|+.++... +.. ... ..+.+. -.....+++
T Consensus 275 ~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~-----~~~---~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~ 346 (433)
T 4hw6_A 275 NFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKL-----AVP---YIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNE 346 (433)
T ss_dssp CEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCB-----CCC---EEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECG
T ss_pred cccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCccc-----CcE---EEEEecCCCCccCCCcccceEEcCCccEEEEccc
Confidence 4579999999854 5555678899988653 211 000 011111 122567888
Q ss_pred -----c-C-CEEEEEeCCCeEEEEcCCCceeeEeeccc-----------------CCCeEEEEEe-cCCCEEEEEeCCCc
Q 003423 317 -----T-D-SFIITAGEDCTCRVWGSDGKQLKMIKEHI-----------------GRGIWRCLYD-SLSSLLVTAGFDSA 371 (821)
Q Consensus 317 -----~-~-~~l~s~~~dg~i~iwd~~~~~~~~~~~h~-----------------~~~i~~l~~~-~~~~~l~tg~~dg~ 371 (821)
. . .++++-...+.|+.++.+|.. .++.+.. -.....|+++ +++.++++=..++.
T Consensus 347 ~y~~dd~~g~lyvaD~~n~~I~~~~~~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~r 425 (433)
T 4hw6_A 347 AYAGEEDEYDFYFCDRDSHTVRVLTPEGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHR 425 (433)
T ss_dssp GGTTSSCCEEEEEEETTTTEEEEECTTSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTE
T ss_pred cccccCCCCcEEEEECCCCEEEEECCCCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCE
Confidence 4 2 445555566789999887743 3332210 0136789999 56666665556777
Q ss_pred EEEEEc
Q 003423 372 IKVHQF 377 (821)
Q Consensus 372 I~iwd~ 377 (821)
|+.+++
T Consensus 426 Ir~i~~ 431 (433)
T 4hw6_A 426 VRKIAP 431 (433)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 887765
No 285
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.59 E-value=0.72 Score=46.36 Aligned_cols=187 Identities=9% Similarity=-0.059 Sum_probs=107.0
Q ss_pred EEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccC
Q 003423 149 SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAH 228 (821)
Q Consensus 149 ~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 228 (821)
+|+.+. .+.|+..|+.+.+....+..-.. ...+.+. ..++.+.++-...+.|..+++.+...
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~~~~~--p~g~~~d--~~~~~ly~~D~~~~~I~~~~~~g~~~------------- 64 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRN--VVALDTE--VASNRIYWSDLSQRMICSTQLDRAHG------------- 64 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEECSCSS--EEEEEEE--TTTTEEEEEETTTTEEEEEEC------------------
T ss_pred EEEEEC-CCeEEEEECCCcceEehhcCCCc--eEEEEEE--eCCCEEEEEECCCCcEEEEECCCCCC-------------
Confidence 344333 45789999887765444432222 3344442 12345555555678898888771000
Q ss_pred CCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEecccCcccCCCCceeeeceEEecc
Q 003423 229 GSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH 307 (821)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h 307 (821)
.......+...-....++++.+.+. +.++-...+.|.+.+...... . ......
T Consensus 65 ----------------~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~------~----~~~~~~ 118 (316)
T 1ijq_A 65 ----------------VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------K----TLFREN 118 (316)
T ss_dssp -------------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE------E----EEEECT
T ss_pred ----------------CcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce------E----EEEECC
Confidence 0111111222224567899987554 445656778999999875432 1 122222
Q ss_pred ceeEEEEEEc--CCEEEEEeC-C-CeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCC
Q 003423 308 NARVWDCCLT--DSFIITAGE-D-CTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG-FDSAIKVHQFQA 379 (821)
Q Consensus 308 ~~~i~~v~~~--~~~l~s~~~-d-g~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~-~dg~I~iwd~~~ 379 (821)
......+++. +..++.+.. . +.|...+++|.....+....-.....+++++++..|+.+. ..+.|..+++++
T Consensus 119 ~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 119 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 3456788886 355554443 2 6888888888766655332222467999998777666554 556899999865
No 286
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.58 E-value=0.61 Score=46.80 Aligned_cols=198 Identities=12% Similarity=0.175 Sum_probs=111.2
Q ss_pred ceEEee-cCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEc---CCeEEEEEEeecCCCC
Q 003423 36 PFLLAG-SGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPN 111 (821)
Q Consensus 36 ~~l~~g-~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g---~~~v~i~~~~~~~~~~ 111 (821)
.++++. ..+-|.+||+ +|+.++.+.. .+++.+...+.. .. .+++.+..+++-. .++|++|+++....
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~---g~~nnVD~r~~~-~l--~g~~~dla~as~R~~~~n~l~vf~iDp~~~-- 111 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT---GKLNNVDIRYDF-PL--NGKKVDIAAASNRSEGKNTIEIYAIDGKNG-- 111 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC---SCEEEEEEEEEE-EE--TTEEEEEEEEEECSTTCCEEEEEEECTTTC--
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC---CCcccEEEeccc-cc--CCceEeEEEEeCCCCCCCeEEEEEECCCCC--
Confidence 344443 3678999999 8999888753 367888877642 11 1111123344433 58999999964320
Q ss_pred CCCCCccccccceeeec--c-CCC-CcEEEEEE--eecCCCCC-EEEEEECCCcEEEEEcc-------CCceeEEEccCc
Q 003423 112 SQYQPETCVNLSLVQSL--P-RLS-HWVFDVCF--LKVCNGNR-SLAIGCSDNSIRVWDIS-------NSSIILEVHSPE 177 (821)
Q Consensus 112 ~~~~~~~~~~~~~~~~~--~-~h~-~~I~~~~~--~~~~~~~~-~l~t~~~d~~i~iwd~~-------~~~~~~~~~~~~ 177 (821)
.++.+... + +.. ..++.+++ +| ..+. ++++...+|.+..|++. +.+.++++..+.
T Consensus 112 ---------~l~~i~~~~~pv~t~~~~pyGlcly~~~--~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs 180 (355)
T 3amr_A 112 ---------TLQSMTDPDHPIATAINEVYGFTLYHSQ--KTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS 180 (355)
T ss_dssp ---------CEEECSCTTSCEECCCSSCCCEEEEECT--TTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS
T ss_pred ---------ceeeccccccCcCCCCCCeeEEEEEecC--CCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC
Confidence 01111110 1 111 55777888 55 1343 67788889999999984 234456665443
Q ss_pred ceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEe-cC-
Q 003423 178 RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GH- 255 (821)
Q Consensus 178 ~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h- 255 (821)
. .-.+.. ++....|+.+-.+.-|..++.. |.. ..+...+..+. +|
T Consensus 181 q--~Egcvv---Dd~~g~Lyv~eEd~GIw~~da~-----p~~-----------------------~~~~~~v~~~~~g~l 227 (355)
T 3amr_A 181 Q--TEGMAA---DDEYGRLYIAEEDEAIWKFSAE-----PDG-----------------------GSNGTVIDRADGRHL 227 (355)
T ss_dssp C--EEEEEE---ETTTTEEEEEETTTEEEEEECS-----TTS-----------------------CSCCEEEEEBSSSSB
T ss_pred C--cceEEE---cCCCCeEEEecccceEEEEeCC-----cCC-----------------------CCCceEEEEecCCcc
Confidence 2 222222 3456788888887554444433 000 00223343331 22
Q ss_pred CCcEEEEEEc--CCCC-EE-EEEeCCCeEEEEecc
Q 003423 256 EGSIFRIEWS--SCGS-KL-VSVSDDRSARIWEVR 286 (821)
Q Consensus 256 ~~~I~~l~~s--~~~~-~l-~s~s~Dg~i~iwd~~ 286 (821)
...+.+|++- ++++ +| +|+-.+.+..+||..
T Consensus 228 ~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 228 TRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp CSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred ccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 2468888884 4555 55 444467899999986
No 287
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.46 E-value=0.18 Score=58.03 Aligned_cols=114 Identities=6% Similarity=-0.032 Sum_probs=66.7
Q ss_pred cCCC-cEEEEEEc-CCCCEEEEEeC-C----CeEEEEecccC-cccCCCCceeeeceEEeccceeEEEEEEc--CCEEEE
Q 003423 254 GHEG-SIFRIEWS-SCGSKLVSVSD-D----RSARIWEVRAE-YWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIIT 323 (821)
Q Consensus 254 ~h~~-~I~~l~~s-~~~~~l~s~s~-D----g~i~iwd~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s 323 (821)
+|.- .+...+|| |||++||-+.+ + .+|+++|+.++ +. .. ..+. ....+++|+ ++.|+.
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-----l~----~~~~---~~~~~~~WspDg~~l~y 237 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-----IA----DKVS---GTNGEIVWGPDHTSLFY 237 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-----CC----CCEE---EECSCCEECSSTTEEEE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-----CC----cccc---CceeeEEEecCCCEEEE
Confidence 3443 67889999 99998874433 2 35999999887 53 11 0111 112357787 345655
Q ss_pred EeCC-----CeEEEEcCCC-ce--eeEeecccCCCeEEEEEecCCCEEEEEeC---CCcEEEEEcCC
Q 003423 324 AGED-----CTCRVWGSDG-KQ--LKMIKEHIGRGIWRCLYDSLSSLLVTAGF---DSAIKVHQFQA 379 (821)
Q Consensus 324 ~~~d-----g~i~iwd~~~-~~--~~~~~~h~~~~i~~l~~~~~~~~l~tg~~---dg~I~iwd~~~ 379 (821)
...| ..|..+++.+ .. ...+..........+.++|||++|+.... ...|.++|+.+
T Consensus 238 ~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 238 VTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp EEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred EEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 5554 2577777733 21 22232222223567899999998876553 33466666643
No 288
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.35 E-value=1 Score=45.30 Aligned_cols=180 Identities=12% Similarity=-0.059 Sum_probs=102.3
Q ss_pred CCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcc
Q 003423 156 DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (821)
Q Consensus 156 d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (821)
.+.|+..|+........+..........+.+. ..++.+..+-...+.|..+++.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d--~~~~~lyw~D~~~~~I~r~~~~g~---------------------- 67 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFV--FSHGLIYWSDVSEEAIKRTEFNKT---------------------- 67 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEE--GGGTEEEEEETTTTEEEEEETTSS----------------------
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEE--eCCCEEEEEECCCCcEEEEEccCC----------------------
Confidence 46788899876531111111111123344442 124555555556788888887611
Q ss_pred eeeecccccceeeEEEEecCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEE
Q 003423 236 CFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC 314 (821)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v 314 (821)
......+...-....++++.+.+ ++.++-...+.|.+.++..... . ............+
T Consensus 68 ----------~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~------~----~l~~~~~~~P~gi 127 (318)
T 3sov_A 68 ----------ESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR------K----VLFWQELDQPRAI 127 (318)
T ss_dssp ----------SCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC------E----EEECSSCSSEEEE
T ss_pred ----------CceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE------E----EEEeCCCCCccEE
Confidence 00011112223456789998754 4556666678899999875432 1 1121333445777
Q ss_pred EEc--CCEEEEEe--CCCeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCC
Q 003423 315 CLT--DSFIITAG--EDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG-FDSAIKVHQFQA 379 (821)
Q Consensus 315 ~~~--~~~l~s~~--~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~-~dg~I~iwd~~~ 379 (821)
++. ...|+.+. ..+.|...+++|.....+....-.....+++++++..|+.+. ..+.|..+++++
T Consensus 128 avdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 128 ALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp EEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 776 35555554 357888888887665555322222467999999776665554 567888888865
No 289
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.17 E-value=1.6 Score=45.94 Aligned_cols=159 Identities=11% Similarity=0.053 Sum_probs=85.0
Q ss_pred eeeEEEEEeccC-CCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEc-
Q 003423 18 GEISALCFVHLP-SHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG- 95 (821)
Q Consensus 18 ~~Vt~l~~~~~p-~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g- 95 (821)
.....|+++ | + .+.+.++-.++.|+.+|++++++..... ......++++++++ ..++++-.
T Consensus 137 ~~P~~lavd--p~~---~g~Lyv~d~~~~I~~id~~~~~v~~~~~--~~~~P~~ia~d~~G----------~~lyvad~~ 199 (430)
T 3tc9_A 137 GGAVWLSFD--PKN---HNHLYLVGEQHPTRLIDFEKEYVSTVYS--GLSKVRTICWTHEA----------DSMIITNDQ 199 (430)
T ss_dssp SCCCEEEEE--TTE---EEEEEEEEBTEEEEEEETTTTEEEEEEC--CCSCEEEEEECTTS----------SEEEEEECC
T ss_pred CCCCEEEEC--CCC---CCeEEEEeCCCcEEEEECCCCEEEEEec--CCCCcceEEEeCCC----------CEEEEEeCC
Confidence 345788898 7 4 2444444445899999998877544433 33457888888653 22333332
Q ss_pred CC--eEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEE
Q 003423 96 EK--RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (821)
Q Consensus 96 ~~--~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~ 173 (821)
++ ...++-+.... . +.....+.. .....+++++| .++.++++-..++.|..++..++......
T Consensus 200 ~~~~~~~v~~~~~~g----------~--~~~~~~l~~-~~~p~giavdp--~~g~lyv~d~~~~~V~~~~~~~~~~~~~~ 264 (430)
T 3tc9_A 200 NNNDRPNNYILTRES----------G--FKVITELTK-GQNCNGAETHP--INGELYFNSWNAGQVFRYDFTTQETTPLF 264 (430)
T ss_dssp SCTTSEEEEEEEGGG----------T--SCSEEEEEE-CSSCCCEEECT--TTCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCcccceEEEEeCCC----------c--eeeeeeecc-CCCceEEEEeC--CCCEEEEEECCCCEEEEEECCCCcEEEEE
Confidence 22 11222222111 0 111111111 12345678887 13444444446788999998876542222
Q ss_pred ccCcceeEEEEeeccCCccCe-EEEEEeeCCEEEEEEcc
Q 003423 174 HSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVD 211 (821)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~i~vwd~~ 211 (821)
..........+++ ++++. +.++-...+.|..++..
T Consensus 265 ~~~~~~~P~gia~---~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 265 TIQDSGWEFHIQF---HPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp ECSSSSCCEEEEE---CTTSSEEEEEETTTTEEEEEEEE
T ss_pred EcCCCCcceeEEE---cCCCCEEEEEECCCCEEEEEeCC
Confidence 2221122234444 57787 44555567899998876
No 290
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.09 E-value=2.8 Score=47.89 Aligned_cols=183 Identities=9% Similarity=-0.054 Sum_probs=105.9
Q ss_pred CCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCc
Q 003423 155 SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (821)
Q Consensus 155 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (821)
....|+..++........+..... ...+++.. .++.+.++-...+.|+.+++....
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~~~--~~gl~~d~--~~~~lY~sD~~~~~I~~~~l~g~~-------------------- 457 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNLRN--VVALDTEV--ASNRIYWSDLSQRMICSTQLDRAH-------------------- 457 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSCSS--EEEEEEET--TTTEEEEEETTTTEEEEEEC------------------------
T ss_pred cccceeEeeccCCcceeeecCCCc--eEEEeecc--cCCeeEEeeccceeEEEEeccCCC--------------------
Confidence 345688888776544333332222 33444421 234455555556778888776100
Q ss_pred ceeeecccccceeeEEEEecCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEE
Q 003423 235 KCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK-LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD 313 (821)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~-l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 313 (821)
........+........+|++.+.++. .++-...+.|.+.++..... . ..+.........
T Consensus 458 ---------~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~------~----~l~~~~l~~P~g 518 (791)
T 3m0c_C 458 ---------GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------K----TLFRENGSKPRA 518 (791)
T ss_dssp -------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE------E----EEEECTTCCEEE
T ss_pred ---------CCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE------E----EEEeCCCCCcce
Confidence 001112223334456778999987754 45556678999999875432 1 122223345678
Q ss_pred EEEcC--CEEEEEe-C-CCeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCCc
Q 003423 314 CCLTD--SFIITAG-E-DCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG-FDSAIKVHQFQAF 380 (821)
Q Consensus 314 v~~~~--~~l~s~~-~-dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~-~dg~I~iwd~~~~ 380 (821)
|++.+ .+|+.+. . .+.|...+++|.....+....-.....|++++.+..|+.+. ....|...++++.
T Consensus 519 IaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~ 590 (791)
T 3m0c_C 519 IVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 590 (791)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence 88863 4555554 2 36888888888776666543323578999998777666654 4567888888653
No 291
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.00 E-value=0.33 Score=48.24 Aligned_cols=113 Identities=11% Similarity=0.028 Sum_probs=78.1
Q ss_pred cEEEEEE---cCCCCEEEEEe-------------CCCeEEEEecc---cCcccCCCCceeeeceEEecc-----------
Q 003423 258 SIFRIEW---SSCGSKLVSVS-------------DDRSARIWEVR---AEYWKDSDSIEEVGSSVLYGH----------- 307 (821)
Q Consensus 258 ~I~~l~~---s~~~~~l~s~s-------------~Dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~h----------- 307 (821)
.+.+|.| .|+++++++.. .++.|..+|+. +++. ...+ .+...
T Consensus 64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~-----~~~~---dL~~~~~~~~~~~g~~ 135 (334)
T 2p9w_A 64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKP-----VWSV---NFEKVQDEFEKKAGKR 135 (334)
T ss_dssp EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCC-----SEEE---ESHHHHHHHHHHHSSC
T ss_pred eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCE-----EEEe---cCcccccccccccccc
Confidence 3578999 68877777543 26889999998 5554 2211 11111
Q ss_pred ceeEEEEEEc--CCEEEEEeCC-CeEEEEcCCCceeeEeec-----ccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 308 NARVWDCCLT--DSFIITAGED-CTCRVWGSDGKQLKMIKE-----HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 308 ~~~i~~v~~~--~~~l~s~~~d-g~i~iwd~~~~~~~~~~~-----h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
.....+++.. ++..++++.- +.|...+.+|+.+..+.. ........|+++|+++.|++....|.|..+|+.
T Consensus 136 ~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 136 PFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp CEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred ccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 1246778887 6788888888 888888888875554321 112236799999999988888779999999986
No 292
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.99 E-value=1.7 Score=44.64 Aligned_cols=188 Identities=9% Similarity=0.099 Sum_probs=121.9
Q ss_pred EEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCccc
Q 003423 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217 (821)
Q Consensus 138 ~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~ 217 (821)
...+| ..+.+|.=. ..++.|+|+++...++.+.-++.-.-|.. .+++..-|++. ..|+-|++.+
T Consensus 71 AIMnP---~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkW----is~~~l~lVT~---taVyHWsi~~----- 134 (494)
T 1bpo_A 71 AIMNP---ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKW----ISLNTVALVTD---NAVYHWSMEG----- 134 (494)
T ss_dssp EEECS---SSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEE----EETTEEEEECS---SEEEEEESSS-----
T ss_pred eeeCC---CCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEe----cCCCeEEEEcC---CeeEEecccC-----
Confidence 44577 778777665 67899999999999988877765444432 13333344444 6799999871
Q ss_pred CCCCCCCcccCCCCCCcceeeecccccceeeEEEEecC----CCcEEEEEEcCCCCEEEEEe-------CCCeEEEEecc
Q 003423 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH----EGSIFRIEWSSCGSKLVSVS-------DDRSARIWEVR 286 (821)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~I~~l~~s~~~~~l~s~s-------~Dg~i~iwd~~ 286 (821)
...+...+.-| ...|..-..+++.++++-.+ -.|.+.+|...
T Consensus 135 ---------------------------~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e 187 (494)
T 1bpo_A 135 ---------------------------ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (494)
T ss_dssp ---------------------------SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST
T ss_pred ---------------------------CCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc
Confidence 12233333333 34677777788888765433 23778899988
Q ss_pred cCcccCCCCceeeeceEEeccceeEEEEEEcC----CEEEEEeCC----CeEEEEcCC----Cce------eeEeecc--
Q 003423 287 AEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD----SFIITAGED----CTCRVWGSD----GKQ------LKMIKEH-- 346 (821)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~----~~l~s~~~d----g~i~iwd~~----~~~------~~~~~~h-- 346 (821)
.+.. ..+.||.+.-..+...+ ..+++-... +.+++-++. +.. +..+...
T Consensus 188 r~~s-----------Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~ 256 (494)
T 1bpo_A 188 RKVS-----------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 256 (494)
T ss_dssp TCCE-----------EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTS
T ss_pred cccc-----------chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCccc
Confidence 7655 68889987776666652 234443333 789999882 111 1111111
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 347 IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 347 ~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
...---++.+++.-..++.-..-|.|.+||+++
T Consensus 257 ~~DFPvamqvs~kygviyviTK~G~i~lyDleT 289 (494)
T 1bpo_A 257 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLET 289 (494)
T ss_dssp TTCCEEEEEEETTTTEEEEEETTSEEEEEETTT
T ss_pred ccCceeEEEecccCCEEEEEecCceEEEEeccc
Confidence 111244788888888999999999999999965
No 293
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=95.99 E-value=2 Score=45.31 Aligned_cols=197 Identities=8% Similarity=0.024 Sum_probs=104.7
Q ss_pred cEEEEEEeecCCC--CCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeC---CE-EEE
Q 003423 134 WVFDVCFLKVCNG--NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY---NE-IIV 207 (821)
Q Consensus 134 ~I~~~~~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d---g~-i~v 207 (821)
....+++.| + ...|..+...+.|+.+|..++......... .....+++ ++++.++++.... .. +..
T Consensus 140 ~P~gvavd~---~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~--~~P~giav---d~dG~lyVad~~~~~~~~gv~~ 211 (433)
T 4hw6_A 140 NIWRMMFDP---NSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNI--GQCADVNF---TLNGDMVVVDDQSSDTNTGIYL 211 (433)
T ss_dssp CCCEEEECT---TTTTCEEEEECBTSCEEEEETTTTEEEEECCCC--SCEEEEEE---CTTCCEEEEECCSCTTSEEEEE
T ss_pred CCceEEEcc---ccCCCEEEEEeCCCCEEEEECCCCEEEEeecCC--CCccEEEE---CCCCCEEEEcCCCCcccceEEE
Confidence 456788887 5 344555544488999998777655433211 12344544 4666644443211 11 222
Q ss_pred EEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecc
Q 003423 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVR 286 (821)
Q Consensus 208 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~-~~~~l~s~s~Dg~i~iwd~~ 286 (821)
.+... .......+. .-....+++++| ++.+.++-..++.|+.+|..
T Consensus 212 ~~~~~--------------------------------~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~ 258 (433)
T 4hw6_A 212 FTRAS--------------------------------GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA 258 (433)
T ss_dssp ECGGG--------------------------------TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred EECCC--------------------------------Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC
Confidence 22220 000001111 223456788999 67766676677889999887
Q ss_pred cCcccCCCCceeeeceEEeccceeEEEEEEc--CCEE-EEEeCCCeEEEEcCCC--ce---eeEeeccc-----------
Q 003423 287 AEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFI-ITAGEDCTCRVWGSDG--KQ---LKMIKEHI----------- 347 (821)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l-~s~~~dg~i~iwd~~~--~~---~~~~~~h~----------- 347 (821)
++.. ...+ ...+....-..++++ +++| ++-...+.|+.+++++ .. ...+.+..
T Consensus 259 ~g~~-----~~~~---~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~ 330 (433)
T 4hw6_A 259 TGTL-----TEEE---VMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGT 330 (433)
T ss_dssp TCCE-----EEEE---EECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGG
T ss_pred CCeE-----EEEE---eccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCccc
Confidence 5432 1111 111111222468887 4544 4555668899987642 11 12222210
Q ss_pred ---CCCeEEEEE---------ecCCCEEEEEeCCCcEEEEEcCC
Q 003423 348 ---GRGIWRCLY---------DSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 348 ---~~~i~~l~~---------~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
-.....+++ .+++++.++-...+.|+.++.++
T Consensus 331 ~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G 374 (433)
T 4hw6_A 331 GARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEG 374 (433)
T ss_dssp GSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTS
T ss_pred ceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCCC
Confidence 012567888 66677666666677888887643
No 294
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=95.82 E-value=2.2 Score=44.46 Aligned_cols=187 Identities=9% Similarity=-0.063 Sum_probs=108.5
Q ss_pred EEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccC
Q 003423 149 SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAH 228 (821)
Q Consensus 149 ~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 228 (821)
+|+.+. .+.|+..++........+.... ....+++.. .++.+.++-...+.|..+++.....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~--~~~~l~~d~--~~~~lywsD~~~~~I~~~~~~g~~~------------- 146 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLR--NVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHG------------- 146 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECSCS--CEEEEEEET--TTTEEEEEETTTTEEEEEEC------------------
T ss_pred eeEEec-cceeEEEccCCcceeEeccccC--cceEEeeee--ccCceEEEecCCCeEEEEEcccCCC-------------
Confidence 444443 5788888887665444333222 234455521 2344555555567888888761000
Q ss_pred CCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEecc
Q 003423 229 GSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH 307 (821)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h 307 (821)
.......+........+|++.+.+ ++.++-...+.|.+.++..... . ......
T Consensus 147 ----------------~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~------~----~l~~~~ 200 (400)
T 3p5b_L 147 ----------------VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------K----TLFREN 200 (400)
T ss_dssp -----------------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE------E----EEEECS
T ss_pred ----------------CCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce------E----EEEeCC
Confidence 011122223344567899999844 4555666678899888875432 1 122223
Q ss_pred ceeEEEEEEc--CCEEEEEe--CCCeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCC
Q 003423 308 NARVWDCCLT--DSFIITAG--EDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG-FDSAIKVHQFQA 379 (821)
Q Consensus 308 ~~~i~~v~~~--~~~l~s~~--~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~-~dg~I~iwd~~~ 379 (821)
-.....+++. ...|+... ..+.|...+++|.....+....-.....|++++++..|+.+. ..+.|..+|+++
T Consensus 201 ~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 201 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp SCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence 3346788886 35555444 247888888888766655432222478999998877776664 456788888865
No 295
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.60 E-value=0.33 Score=49.80 Aligned_cols=160 Identities=12% Similarity=0.125 Sum_probs=96.3
Q ss_pred cceEEeecCCeEEEEECCCCeeeeEEEeec---cccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCC
Q 003423 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFH---GIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPN 111 (821)
Q Consensus 35 ~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~---~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~ 111 (821)
+.-++...++.||.-++..+...+.++... -..|+.+..+|++ .++++.|+..|.|..+..+....
T Consensus 32 ~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG-----------~lLAl~g~~~V~Vv~LP~~~~~~ 100 (452)
T 3pbp_A 32 GTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSG-----------DLLCLFNDNEIFVMEVPWGYSNV 100 (452)
T ss_dssp TTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTS-----------SEEEEECSSEEEEEECCTTCSCC
T ss_pred CCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCC-----------CEEEEecCCeEEEEEecCccccC
Confidence 455666777889988887555555555532 2257778888664 59999999999999998432111
Q ss_pred CCCCCccccccceeeeccC----CCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce-eEEEccCcc--------
Q 003423 112 SQYQPETCVNLSLVQSLPR----LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-ILEVHSPER-------- 178 (821)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~----h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~-------- 178 (821)
........++.+ ...+.. ....|..+.|||.+..+..|++=..|+.||+||+..... ...+....+
T Consensus 101 ~~~~~~~~~q~~-ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~ 179 (452)
T 3pbp_A 101 EDVSIQDAFQIF-HYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARV 179 (452)
T ss_dssp CCHHHHHTTEEE-EEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSC
T ss_pred ccccccccccee-EEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCccc
Confidence 100000001110 111111 357899999999766778899999999999999986321 112321111
Q ss_pred eeEEEEeeccCCccCeEEEE--EeeCCEEEEEE
Q 003423 179 CLLYSMKLWGDNLEALRIAS--GTIYNEIIVWK 209 (821)
Q Consensus 179 ~~~~s~~~~~~s~~~~~l~s--g~~dg~i~vwd 209 (821)
..+-+++|- .++..|.. .+..|.|+-.-
T Consensus 180 ~ev~S~~Fg---~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 180 NDITDLEFS---KDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp CCEEEEEEC---TTSSCEEEEECTTSCEEEEES
T ss_pred ceEEEEEEc---CCCcEEEEEecCCCCCEEEEC
Confidence 234567773 35554544 44777776543
No 296
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.32 E-value=1.3 Score=44.05 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=50.9
Q ss_pred CCCEEEEEeCC-----CeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCC-----CeEEEEcCC
Q 003423 267 CGSKLVSVSDD-----RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGED-----CTCRVWGSD 336 (821)
Q Consensus 267 ~~~~l~s~s~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~d-----g~i~iwd~~ 336 (821)
+++.++.|+.+ ..+.++|+.+... ..+. .+.........+.+.+..++.|+.+ ..+.+||+.
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W------~~~~--~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 230 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHW------TNVT--PMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIR 230 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEE------EEEC--CCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcE------EeCC--CCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCC
Confidence 56666777654 4578888877654 1110 0100111112333445666666654 468888884
Q ss_pred CceeeEeecc-cCCCeEEEEEecCCCEEEEEeCCC-----cEEEEEcC
Q 003423 337 GKQLKMIKEH-IGRGIWRCLYDSLSSLLVTAGFDS-----AIKVHQFQ 378 (821)
Q Consensus 337 ~~~~~~~~~h-~~~~i~~l~~~~~~~~l~tg~~dg-----~I~iwd~~ 378 (821)
...-..+... ..+.-.+++. -++++++.||.++ .+.+||++
T Consensus 231 ~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~ 277 (301)
T 2vpj_A 231 TDSWTTVTSMTTPRCYVGATV-LRGRLYAIAGYDGNSLLSSIECYDPI 277 (301)
T ss_dssp TTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBEEEEEEEETT
T ss_pred CCcEEECCCCCCcccceeEEE-ECCEEEEEcCcCCCcccccEEEEcCC
Confidence 3333333211 1111112222 2567778887653 45666664
No 297
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.27 E-value=3 Score=42.33 Aligned_cols=202 Identities=8% Similarity=0.070 Sum_probs=105.2
Q ss_pred CCccEEEEEecCCCCCCcceeEEeec-cC-ccceeeeeEEeecCCC--eEEEEECC--CCcEEEeeecCCCCcccccCCc
Q 003423 492 GKGNMTIVRVVGDVHTPQLSFTFTWS-AG-IERQLLGTYWCKSLGH--RFIFTADP--KGRLKLWQLCDPFSSVCYESSK 565 (821)
Q Consensus 492 ~~g~i~i~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~--~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~ 565 (821)
.+|.|.++|.++...... .+.+.-. .+ ..-.+.++-.....++ .++++-.. +..|.+|++....
T Consensus 81 ~~G~I~~~d~~~~~~~~~-~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~--------- 150 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVS-ELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEE--------- 150 (355)
T ss_dssp -CCEEEEEETTSSSCCEE-ECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTT---------
T ss_pred CCCeEEEEecCCCCCceE-EEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCC---------
Confidence 688999999764322211 1222110 11 1223444443332233 23444333 4578888887642
Q ss_pred cceeeeeEEEecccCceEEEEEeecCCCEEEEEcC-----------------CCcEEEEecCcccccccccccccccCcc
Q 003423 566 TNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDL-----------------RGNLVLFPLLRDLLNDKSVALHVEVSPL 628 (821)
Q Consensus 566 ~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~-----------------dG~i~iw~~~~~~~~~~~~~~~~~~~~~ 628 (821)
....+...+....-...+.+++.++|++.++.+. .|.|+-++-. . .
T Consensus 151 -~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~-------------~---~ 213 (355)
T 3sre_A 151 -KSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN-------------D---V 213 (355)
T ss_dssp -TEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT-------------C---C
T ss_pred -CEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC-------------e---E
Confidence 1224445543333456789999999998888652 2333333311 0 1
Q ss_pred cccccccCCcceEEEEEEecCCCceEEEEecCCCeEEEEEeecCCceeeeeeeeeeeeeeeeeeeccCCCccCC-CCCeE
Q 003423 629 NYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDL-ASCNY 707 (821)
Q Consensus 629 ~~~~~~h~~~~Vt~i~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l 707 (821)
... ..+...-+.|+|+| ++....++-+..+.|..|+++.+.... ..+.... ...+++..++. ++++.
T Consensus 214 ~~~--~~~l~~pNGia~sp--Dg~~lYvadt~~~~I~~~~~~~~g~l~------~~~~~~~--~g~PDGi~vD~e~G~lw 281 (355)
T 3sre_A 214 RVV--AEGFDFANGINISP--DGKYVYIAELLAHKIHVYEKHANWTLT------PLRVLSF--DTLVDNISVDPVTGDLW 281 (355)
T ss_dssp EEE--EEEESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSCEE------EEEEEEC--SSEEEEEEECTTTCCEE
T ss_pred EEe--ecCCcccCcceECC--CCCEEEEEeCCCCeEEEEEECCCCcEe------cCEEEeC--CCCCceEEEeCCCCcEE
Confidence 111 11223468898985 333445555567889999987543210 1111111 12345667777 47776
Q ss_pred EEee-ecccEEEEECc--cccEEEEEee
Q 003423 708 AAGF-ASTDFIIWNLI--TEAKVVQIPC 732 (821)
Q Consensus 708 ~~g~-~~~~~~vW~~~--~~~~l~~i~c 732 (821)
+++. ....+..||.. ..+++++|.-
T Consensus 282 va~~~~g~~v~~~~P~~~~~s~v~rI~~ 309 (355)
T 3sre_A 282 VGCHPNGMRIFFYDAENPPGSEVLRIQD 309 (355)
T ss_dssp EEEESCHHHHHSCCTTSCCCEEEEEEEC
T ss_pred EEecCCceEEEEECCCCCCCCEEEEEEc
Confidence 6443 55667777765 4777888864
No 298
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.19 E-value=2.7 Score=41.46 Aligned_cols=223 Identities=9% Similarity=0.078 Sum_probs=132.9
Q ss_pred CCcceeeccce--eeeeeEE--EEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCC
Q 003423 5 DLSEWRLDVGQ--YLGEISA--LCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTE 80 (821)
Q Consensus 5 ~i~~w~~~~~~--~~~~Vt~--l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~ 80 (821)
.+.|-|+.++. -..||.| .-.+ |. ...+|-=.+..|.|+|+++.+.++.....+ .|.--.|-..
T Consensus 50 ~VvIiDl~n~~~~~Rrpi~AdsAIMn--P~----~~ViALrag~~LQiFnletK~klks~~~~e--~VvfWkWis~---- 117 (365)
T 2xzh_A 50 QVVIIDMNDPSNPIRRPISADSAIMN--PA----SKVIALKAGKTLQIFNIEMKSKMKAHTMTD--DVTFWKWISL---- 117 (365)
T ss_dssp EEEEEETTSTTSCEEEECCCSEEEEC--SS----SSEEEEEETTEEEEEETTTTEEEEEEECSS--CEEEEEECSS----
T ss_pred EEEEEECCCCCCccccccccceeeeC--CC----ccEEEEecCCeEEEechHHhhhhcceecCC--ccEEEEecCC----
Confidence 45566666644 2223332 2235 65 566666668999999999999998888644 4666666532
Q ss_pred CCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCC----CCcEEEEEEeecCCCCCEEEEEEC-
Q 003423 81 GSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL----SHWVFDVCFLKVCNGNRSLAIGCS- 155 (821)
Q Consensus 81 ~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~I~~~~~~~~~~~~~~l~t~~~- 155 (821)
..++...+..|.-|++.... .+.+.+..| ...|..-..++ +.++++..+-
T Consensus 118 --------~~L~lVT~taVyHWs~~~~s--------------~P~kvFdR~~~L~~~QIInY~~d~---~~kW~~l~GI~ 172 (365)
T 2xzh_A 118 --------NTVALVTDNAVYHWSMEGES--------------QPVKMFDRHSSLAGCQIINYRTDA---KQKWLLLTGIS 172 (365)
T ss_dssp --------SEEEEEESSEEEEEESSTTC--------------CCEEEEECCGGGTTCEEEEEEECT---TSCEEEEEEEE
T ss_pred --------CeEEEEcCCcEEEEcccCCC--------------CCceeeecchhcccceEEEEEECC---CCCEEEEEeEe
Confidence 47888889999999987533 222333333 24566667677 8887765432
Q ss_pred ------CCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeC---CEEEEEEcccCCcccCCCCCCCcc
Q 003423 156 ------DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY---NEIIVWKVDWEHVAPLLNSPEGNH 226 (821)
Q Consensus 156 ------d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~ 226 (821)
.|.+.+|..+.+ ..+.+.+|..+. .++.+-+......+++-+... ++++|-++.... .+.+.
T Consensus 173 ~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F-~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~----~~~~~--- 243 (365)
T 2xzh_A 173 AQQNRVVGAMQLYSVDRK-VSQPIEGHAASF-AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPP----TGNQP--- 243 (365)
T ss_dssp EETTEEEEEEEEEETTTT-EEEEECCSEEEE-EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCC----TTCCC---
T ss_pred ccCCccceeEEEEeeccc-ccceeeeeeeee-EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCC----CCCCC---
Confidence 366788887654 344455555432 233443333334455544442 588888875210 00000
Q ss_pred cCCCCCCcceeeecccccceeeEEEEe---cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcc
Q 003423 227 AHGSSSDFKCFKLQDQQHTAVNLFRLV---GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (821)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~ 290 (821)
...+.+..+. +-.+--.++..++.-..+..-..-|.|.++|+.++.+
T Consensus 244 -----------------f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~ 293 (365)
T 2xzh_A 244 -----------------FPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 293 (365)
T ss_dssp -----------------CCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred -----------------cccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcE
Confidence 0111111111 2244556788888777888888999999999999765
No 299
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.15 E-value=1.2 Score=44.21 Aligned_cols=102 Identities=13% Similarity=0.120 Sum_probs=50.8
Q ss_pred CCCEEEEEeCC-------CeEEEEecccCcccCCCCceeeec--eEEeccceeEEEEEEcCCEEEEEeCC-----CeEEE
Q 003423 267 CGSKLVSVSDD-------RSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNARVWDCCLTDSFIITAGED-----CTCRV 332 (821)
Q Consensus 267 ~~~~l~s~s~D-------g~i~iwd~~~~~~~~~~~~~~~~~--~~~~~h~~~i~~v~~~~~~l~s~~~d-----g~i~i 332 (821)
+++.++.|+.+ ..+.+||+.+... ..+.. ....+| ..+.+.+..++.||.+ ..+.+
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W------~~~~~~p~~r~~~----~~~~~~~~iyv~GG~~~~~~~~~~~~ 224 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEW------TYIAEMSTRRSGA----GVGVLNNLLYAVGGHDGPLVRKSVEV 224 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEE------EEECCCSSCCBSC----EEEEETTEEEEECCBSSSSBCCCEEE
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcE------EECCCCccccccc----cEEEECCEEEEECCCCCCcccceEEE
Confidence 45555655542 3578888877654 11100 011112 2233445666666654 36888
Q ss_pred EcCCCceeeEeeccc-CCCeEEEEEecCCCEEEEEeCCC-----cEEEEEcCC
Q 003423 333 WGSDGKQLKMIKEHI-GRGIWRCLYDSLSSLLVTAGFDS-----AIKVHQFQA 379 (821)
Q Consensus 333 wd~~~~~~~~~~~h~-~~~i~~l~~~~~~~~l~tg~~dg-----~I~iwd~~~ 379 (821)
||+....-..+.... .+.-.+++. -++++++.||.++ .+.+||+..
T Consensus 225 yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~ 276 (302)
T 2xn4_A 225 YDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTT 276 (302)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred EeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCC
Confidence 888443333332211 111112222 2567778887654 377777754
No 300
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.06 E-value=1.2 Score=44.56 Aligned_cols=94 Identities=12% Similarity=0.168 Sum_probs=45.3
Q ss_pred CCCEEEEEeC-C-----CeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCC-----eEEEEcC
Q 003423 267 CGSKLVSVSD-D-----RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDC-----TCRVWGS 335 (821)
Q Consensus 267 ~~~~l~s~s~-D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg-----~i~iwd~ 335 (821)
+++.++.|+. + ..+.+||..+... ..+. .+......-..+.+.+..++.||.++ .+.+||+
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W------~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 219 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEW------KELA--PMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSI 219 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEEETTTTEE------EECC--CCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEET
T ss_pred CCEEEEEeCCCCCCcccceEEEEeCCCCeE------EECC--CCCCchhceEEEEECCEEEEEeccCCCCccceEEEEEC
Confidence 4556666665 2 4688888887643 1110 01001111123344566777777654 4777887
Q ss_pred CCceeeEeecc-cCCCeEEEEEecCCCEEEEEeCC
Q 003423 336 DGKQLKMIKEH-IGRGIWRCLYDSLSSLLVTAGFD 369 (821)
Q Consensus 336 ~~~~~~~~~~h-~~~~i~~l~~~~~~~~l~tg~~d 369 (821)
....-..+... ..+.-.+++. -++++++.||.+
T Consensus 220 ~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~ 253 (315)
T 4asc_A 220 TDNKWAPFEAFPQERSSLSLVS-LVGTLYAIGGFA 253 (315)
T ss_dssp TTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEE
T ss_pred CCCeEEECCCCCCcccceeEEE-ECCEEEEECCcc
Confidence 43333332211 1111112222 256777888764
No 301
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.83 E-value=1.6 Score=43.54 Aligned_cols=62 Identities=13% Similarity=0.095 Sum_probs=33.6
Q ss_pred CCCEEEEEECC----CcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeC------CEEEEEEcc
Q 003423 146 GNRSLAIGCSD----NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY------NEIIVWKVD 211 (821)
Q Consensus 146 ~~~~l~t~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d------g~i~vwd~~ 211 (821)
++.+++.|+.+ +.+.+||..+.+-...-..+....-.++.. .++.+++.|+.+ ..+.+||..
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~~~d~~ 126 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA----AEGKIYTSGGSEVGNSALYLFECYDTR 126 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE----ETTEEEEECCBBTTBSCCCCEEEEETT
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE----ECCEEEEECCCCCCCcEeeeEEEEeCC
Confidence 66677777654 678889988775432222121111111221 255666666654 456777766
No 302
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=94.81 E-value=7.3 Score=44.47 Aligned_cols=236 Identities=8% Similarity=-0.060 Sum_probs=119.6
Q ss_pred ceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCC
Q 003423 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQ 115 (821)
Q Consensus 36 ~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~ 115 (821)
.+|+.+....|+..++...+....+.. ...+.++.+.+.. . ..+++-...+.|+.+++......
T Consensus 396 p~Ll~an~~~Ir~i~l~~~~~~~l~~~--~~~~~gl~~d~~~-----~----~lY~sD~~~~~I~~~~l~g~~~~----- 459 (791)
T 3m0c_C 396 AYLFFTNRHEVRKMTLDRSEYTSLIPN--LRNVVALDTEVAS-----N----RIYWSDLSQRMICSTQLDRAHGV----- 459 (791)
T ss_dssp CEEEEECBSSEEEECTTSCCCEEEECS--CSSEEEEEEETTT-----T----EEEEEETTTTEEEEEEC-----------
T ss_pred cccccccccceeEeeccCCcceeeecC--CCceEEEeecccC-----C----eeEEeeccceeEEEEeccCCCCC-----
Confidence 466666667788888876654443333 2357788887431 0 12233334577777777632100
Q ss_pred CccccccceeeeccCCCCcEEEEEEeecCCCCCEE-EEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCcc-C
Q 003423 116 PETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL-AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE-A 193 (821)
Q Consensus 116 ~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l-~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~-~ 193 (821)
......+.........|++.+ .++.| ++-...+.|.+.++..... ..+..........+++ ++. +
T Consensus 460 ------~~~~~vi~~~l~~P~GLAvD~---~~~~LY~tD~~~~~I~v~~ldG~~~-~~l~~~~l~~P~gIaV---Dp~~g 526 (791)
T 3m0c_C 460 ------SSYDTVISRDIQAPDGLAVDW---IHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVV---DPVHG 526 (791)
T ss_dssp --------CEEEECSSCSCCCEEEEET---TTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEE---ETTTT
T ss_pred ------cceeEEEecCCCCcceeeeee---cCCcEEEEecCCCeEEEEeCCCCeE-EEEEeCCCCCcceEEE---ecCCC
Confidence 011122222334567788887 66444 4445578899999865433 2222111111334444 233 3
Q ss_pred eEEEEEee-CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEE
Q 003423 194 LRIASGTI-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLV 272 (821)
Q Consensus 194 ~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~ 272 (821)
.+.++-.. .+.|.+.++. .......+...-...++|++.+.+..|+
T Consensus 527 ~LYwtD~g~~~~I~~~~~d---------------------------------G~~~~~lv~~~l~~P~GLavD~~~~~LY 573 (791)
T 3m0c_C 527 FMYWTDWGTPAKIKKGGLN---------------------------------GVDIYSLVTENIQWPNGITLDLLSGRLY 573 (791)
T ss_dssp EEEEEECSSSCEEEEEETT---------------------------------SCCEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred CEEEecCCCCCeEEEEecC---------------------------------CCceEEEEeCCCCCceEEEEecCCCeEE
Confidence 33333322 2667777766 1111112223335789999998776665
Q ss_pred EE-eCCCeEEEEecccCcccCCCCceeeeceEEec--cceeEEEEEEcCCEEEE-EeCCCeEEEEcC-CCceeeEe
Q 003423 273 SV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG--HNARVWDCCLTDSFIIT-AGEDCTCRVWGS-DGKQLKMI 343 (821)
Q Consensus 273 s~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~v~~~~~~l~s-~~~dg~i~iwd~-~~~~~~~~ 343 (821)
.+ .....|...++..... . ..... .-....+|++.+++|+. -...+.|...+. +|+.+..+
T Consensus 574 waD~~~~~I~~~d~dG~~~------~----~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 574 WVDSKLHSISSIDVNGGNR------K----TILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEETTTTEEEEEETTSCSC------E----EEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEeCCCCcEEEEecCCCce------E----EEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 54 4456788888765433 1 11111 11233455555444444 345566666654 55444444
No 303
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=94.68 E-value=0.047 Score=61.93 Aligned_cols=240 Identities=8% Similarity=-0.087 Sum_probs=114.6
Q ss_pred ceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEE-EcCCeEEEEEEeecCCCCCCC
Q 003423 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQY 114 (821)
Q Consensus 36 ~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~-~g~~~v~i~~~~~~~~~~~~~ 114 (821)
.+|+.+....|++.++.+.+....+... ..++++.|.+.. ..++.+ ...+.|+.+++..... ..
T Consensus 378 ~~ll~~~~~~I~~id~~~~~~~~~~~~~--~~p~gla~d~~~----------~~Ly~sD~~~~~I~~~~~~g~~~-~~-- 442 (699)
T 1n7d_A 378 AYLFFTNRHEVRKMTLDRSEYTSLIPNL--RNVVALDTEVAS----------NRIYWSDLSQRMICSTQLDRAHG-VS-- 442 (699)
T ss_dssp CCBCCCCTTC-CEECTTSCCEECCSCCC--TTCCCCEEETTT----------TEEEECCTTTTSBEEEESCCCCC--C--
T ss_pred eeEEecCccceEEEeCCCCcceeeeccC--cceEEEcccccc----------CeEEEEecCCCeEEEEecCCCCC-Cc--
Confidence 4555566678999998877655444432 357788887431 122222 2357787777663100 00
Q ss_pred CCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCe
Q 003423 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEAL 194 (821)
Q Consensus 115 ~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~ 194 (821)
.....+...-.....+++.+ ..++++++-...+.|.+.++........+.... .....+++ ++.+.
T Consensus 443 --------~~~~~i~~~~~~P~glavD~--~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~-~~P~giav---Dp~~g 508 (699)
T 1n7d_A 443 --------SYDTVISRDIQAPDGLAVDW--IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQG-SKPRAIVV---DPVHG 508 (699)
T ss_dssp --------CCCCBCCSCC--CCCEECCC--SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSS-CCCCCEEC---CSSSS
T ss_pred --------ceEEEEeCCCCCcceEEEEe--eCCcEEEEeccCCeEEEEecCCCceEEEEeCCC-CCcceEEE---ccCCC
Confidence 00111111112345577775 134444544556789999876543322222110 01112222 23333
Q ss_pred EEEEEe-e-CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCE-E
Q 003423 195 RIASGT-I-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK-L 271 (821)
Q Consensus 195 ~l~sg~-~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~-l 271 (821)
.|+... . .+.|.+.++.. .... ..+...-...++|+|+|++.. .
T Consensus 509 ~ly~td~~~~~~I~~~~~dG--------------------------------~~~~-~l~~~~l~~PnGlavd~~~~~LY 555 (699)
T 1n7d_A 509 FMYWTDWGTPAKIKKGGLNG--------------------------------VDIY-SLVTENIQWPNGITLDLLSGRLY 555 (699)
T ss_dssp CCEECCCSSSCCEEBCCSSS--------------------------------CCCC-EESCSSCSSCCCEEECTTTCCEE
T ss_pred cEEEcccCCCCeEEEEeCCC--------------------------------CCee-EEEeCCCCCccEEEEeccCCEEE
Confidence 333222 1 24555555441 0000 011112234568999987654 4
Q ss_pred EEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc-CCEEEEEeCCCeEEEEcC-CCceeeEeec
Q 003423 272 VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKE 345 (821)
Q Consensus 272 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~l~s~~~dg~i~iwd~-~~~~~~~~~~ 345 (821)
++-+..+.|..+++..... +.+ ....+.......+++. +.++++....+.|..++. +|+.+..+..
T Consensus 556 ~aD~~~~~I~~~d~dG~~~------~~~--~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 556 WVDSKLHSISSIDVNGGNR------KTI--LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp EEETTTTEEEEECSSSSCC------EEE--CCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred EEecCCCeEEEEccCCCce------EEE--EecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 5555667899999865332 111 0000111223344554 344455556678888876 5666655543
No 304
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.59 E-value=1.4 Score=52.58 Aligned_cols=188 Identities=9% Similarity=0.084 Sum_probs=113.7
Q ss_pred EEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCccc
Q 003423 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217 (821)
Q Consensus 138 ~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~ 217 (821)
...+| ..+.+|.=. ..++.|+|+++...++.+.-++.-+-|. |.+++..-|+|+ ..|.-|++.++
T Consensus 71 AIMnP---~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWk----Wis~~~l~lVT~---~aVyHW~~~~~---- 135 (1630)
T 1xi4_A 71 AIMNP---ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWK----WISLNTVALVTD---NAVYHWSMEGE---- 135 (1630)
T ss_pred hccCC---CcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEE----ecCCCeeEEEcC---CeEEEeccCCC----
Confidence 34466 777777654 6789999999988887777666433332 224555555555 67999999720
Q ss_pred CCCCCCCcccCCCCCCcceeeecccccceeeEEEEecC----CCcEEEEEEcCCCCEEEEEe-------CCCeEEEEecc
Q 003423 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH----EGSIFRIEWSSCGSKLVSVS-------DDRSARIWEVR 286 (821)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~I~~l~~s~~~~~l~s~s-------~Dg~i~iwd~~ 286 (821)
..+...+.-| ...|..-..+++.++++-.| -.|.+.+|...
T Consensus 136 ----------------------------s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e 187 (1630)
T 1xi4_A 136 ----------------------------SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (1630)
T ss_pred ----------------------------CccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc
Confidence 1111111112 34566777777877765332 34788899888
Q ss_pred cCcccCCCCceeeeceEEeccceeEEEEEEc----CCEEEEEeCC----CeEEEEcCCC----cee------eEeecc--
Q 003423 287 AEYWKDSDSIEEVGSSVLYGHNARVWDCCLT----DSFIITAGED----CTCRVWGSDG----KQL------KMIKEH-- 346 (821)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~----~~~l~s~~~d----g~i~iwd~~~----~~~------~~~~~h-- 346 (821)
.+.. ..+.||.+.-..+... +..+++.... +.+++-++.. ... ..+...
T Consensus 188 r~~s-----------Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~ 256 (1630)
T 1xi4_A 188 RKVS-----------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 256 (1630)
T ss_pred cccc-----------hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCccc
Confidence 7654 4677776655444443 2334443333 6888888721 111 111111
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 347 IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 347 ~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
...-..++..++.-..++.-+.-|.|.++|+.+
T Consensus 257 ~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t 289 (1630)
T 1xi4_A 257 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLET 289 (1630)
T ss_pred ccCcceEEEeccccCEEEEEecCceEEEEeccc
Confidence 111233677777778888889999999999955
No 305
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=94.30 E-value=5.2 Score=40.54 Aligned_cols=178 Identities=15% Similarity=0.148 Sum_probs=97.8
Q ss_pred cCCeEEEEECCC--CeeeeEEEe----e--ccccEEeEEeccccCCCCCCccceeeEEEEE---cCCeEEEEEEeecCCC
Q 003423 42 SGSQVLLYDLEA--GTLIRPFQV----F--HGIRLHGISCNFINCTEGSVSTRVTFEVALF---GEKRVKLFELNFELSP 110 (821)
Q Consensus 42 ~~~~i~iwd~~t--~~~~~~~~~----~--~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~---g~~~v~i~~~~~~~~~ 110 (821)
.+|.|.++|.++ ++. .++.. + ..-+.|+|.+.++ .+++ .+++++- ++.++.+|+++.+..
T Consensus 81 ~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d-----~dg~--~~L~Vvnh~~~~s~ielf~~d~~~~- 151 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFID-----DDNT--VYLLVVNHPGSSSTVEVFKFQEEEK- 151 (355)
T ss_dssp -CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEEC-----TTCC--EEEEEEECSTTCCEEEEEEEETTTT-
T ss_pred CCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEEC-----CCCc--EEEEEEECCCCCCeEEEEEEECCCC-
Confidence 478999999974 332 23332 1 1247899998753 1211 2344442 257899999985420
Q ss_pred CCCCCCccccccceeeeccCCC-CcEEEEEEeecCCCCCEEEEEEC---C------------CcEEEEEccCCceeEEEc
Q 003423 111 NSQYQPETCVNLSLVQSLPRLS-HWVFDVCFLKVCNGNRSLAIGCS---D------------NSIRVWDISNSSIILEVH 174 (821)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~h~-~~I~~~~~~~~~~~~~~l~t~~~---d------------~~i~iwd~~~~~~~~~~~ 174 (821)
....+..+.+.. ...+++++.+ +|.+.++... | ..=++|-+..++......
T Consensus 152 ----------~~~~~~~~~g~~~~~pND~~v~~---~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~ 218 (355)
T 3sre_A 152 ----------SLLHLKTIRHKLLPSVNDIVAVG---PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE 218 (355)
T ss_dssp ----------EEEEEEEECCTTCSSEEEEEEEE---TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEE
T ss_pred ----------EEEEEeccccCCCCCCceEEEeC---CCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeec
Confidence 123444554432 4688999999 9987776531 1 223344433332211111
Q ss_pred cCcceeEEEEeeccCCccCeEEEEE-eeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEe
Q 003423 175 SPERCLLYSMKLWGDNLEALRIASG-TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (821)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (821)
.- .....+++ +||+..+..+ +..+.|..|++... ........+
T Consensus 219 ~l--~~pNGia~---spDg~~lYvadt~~~~I~~~~~~~~------------------------------g~l~~~~~~- 262 (355)
T 3sre_A 219 GF--DFANGINI---SPDGKYVYIAELLAHKIHVYEKHAN------------------------------WTLTPLRVL- 262 (355)
T ss_dssp EE--SSEEEEEE---CTTSSEEEEEEGGGTEEEEEEECTT------------------------------SCEEEEEEE-
T ss_pred CC--cccCcceE---CCCCCEEEEEeCCCCeEEEEEECCC------------------------------CcEecCEEE-
Confidence 10 11223444 5888666554 56789999998610 011111222
Q ss_pred cCCCcEEEEEEcC-CCCEEEEEeCC
Q 003423 254 GHEGSIFRIEWSS-CGSKLVSVSDD 277 (821)
Q Consensus 254 ~h~~~I~~l~~s~-~~~~l~s~s~D 277 (821)
...+..-.+++.+ +|++.+++..+
T Consensus 263 ~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 263 SFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred eCCCCCceEEEeCCCCcEEEEecCC
Confidence 2246678899998 58887777644
No 306
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.12 E-value=3.5 Score=41.15 Aligned_cols=92 Identities=12% Similarity=0.162 Sum_probs=42.9
Q ss_pred CCCEEEEEeC------CCeEEEEecccCcccCCCCceeeec--eEEeccceeEEEEEEcCCEEEEEeCC-----CeEEEE
Q 003423 267 CGSKLVSVSD------DRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNARVWDCCLTDSFIITAGED-----CTCRVW 333 (821)
Q Consensus 267 ~~~~l~s~s~------Dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~h~~~i~~v~~~~~~l~s~~~d-----g~i~iw 333 (821)
+++.++.|+. -..+.++|+.+... ..+.. .....| ..+.+.+..++.||.+ ..+.+|
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W------~~~~~~p~~r~~~----~~~~~~~~iyv~GG~~~~~~~~~~~~y 227 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDW------KDLAPMKTPRSMF----GVAIHKGKIVIAGGVTEDGLSASVEAF 227 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEE------EEECCCSSCCBSC----EEEEETTEEEEEEEEETTEEEEEEEEE
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEE------EECCCCCCCcccc----eEEEECCEEEEEcCcCCCCccceEEEE
Confidence 5566666653 23588889887654 11100 011112 2233445666666644 346677
Q ss_pred cCCCceeeEeeccc-CCCeEEEEEecCCCEEEEEeCC
Q 003423 334 GSDGKQLKMIKEHI-GRGIWRCLYDSLSSLLVTAGFD 369 (821)
Q Consensus 334 d~~~~~~~~~~~h~-~~~i~~l~~~~~~~~l~tg~~d 369 (821)
|+....-..+.... .+.-.+++. -++++++.||.+
T Consensus 228 d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~ 263 (318)
T 2woz_A 228 DLKTNKWEVMTEFPQERSSISLVS-LAGSLYAIGGFA 263 (318)
T ss_dssp ETTTCCEEECCCCSSCCBSCEEEE-ETTEEEEECCBC
T ss_pred ECCCCeEEECCCCCCcccceEEEE-ECCEEEEECCee
Confidence 87433222222111 111112222 356777777754
No 307
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=94.02 E-value=1.7 Score=44.67 Aligned_cols=105 Identities=10% Similarity=0.105 Sum_probs=71.9
Q ss_pred EEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccC--CCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCC
Q 003423 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR--LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (821)
Q Consensus 90 ~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~ 167 (821)
.+.++-++.||.-++..+. ..+.++ ++. --+.|..+..+| +|++||..+ +..|.|-.+..+
T Consensus 34 ~i~~a~~n~iR~~~i~~~~------------~Yk~L~-~~~~i~f~~i~qlvlSp---sG~lLAl~g-~~~V~Vv~LP~~ 96 (452)
T 3pbp_A 34 RIVFIQDNIIRWYNVLTDS------------LYHSLN-FSRHLVLDDTFHVISST---SGDLLCLFN-DNEIFVMEVPWG 96 (452)
T ss_dssp EEEEEETTEEEEEETTTCS------------SCEEEE-CTTTCCCCTTCEEEECT---TSSEEEEEC-SSEEEEEECCTT
T ss_pred EEEEEECCEEEEEECCCCC------------cceEEe-cCcccccCceeEEEECC---CCCEEEEec-CCeEEEEEecCc
Confidence 5556667888888876432 122222 221 123577899999 999999886 558888888732
Q ss_pred c------------eeEEEccC-----cceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcc
Q 003423 168 S------------IILEVHSP-----ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (821)
Q Consensus 168 ~------------~~~~~~~~-----~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~ 211 (821)
. ..+.+.-. ....+..+.||+.+..+..|++-+.|+.|++||+.
T Consensus 97 ~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~ 157 (452)
T 3pbp_A 97 YSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDIL 157 (452)
T ss_dssp CSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETT
T ss_pred cccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcc
Confidence 1 11222211 13457888999998889999999999999999998
No 308
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=93.88 E-value=9.8 Score=42.19 Aligned_cols=234 Identities=12% Similarity=-0.009 Sum_probs=126.1
Q ss_pred ceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEE-EcCCeEEEEEEeecCCCCCCC
Q 003423 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQY 114 (821)
Q Consensus 36 ~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~-~g~~~v~i~~~~~~~~~~~~~ 114 (821)
.+|+.+....|+..|+++.+....+....-..+.++.+.+.. ..++.+ ...+.|..++++...
T Consensus 7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~----------~~lywtD~~~~~I~r~~~~g~~------ 70 (628)
T 4a0p_A 7 AFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTD----------NRIYWTDISLKTISRAFMNGSA------ 70 (628)
T ss_dssp CEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTT----------TEEEEEETTTTEEEEEETTSCS------
T ss_pred cEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCC----------CEEEEEECCCCeEEEEECCCCC------
Confidence 467777889999999987654433333232357889988541 123333 346777777665221
Q ss_pred CCccccccceeeeccCCCCcEEEEEEeecCCCCCEE-EEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCc-c
Q 003423 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL-AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-E 192 (821)
Q Consensus 115 ~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l-~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~-~ 192 (821)
.+. .+..-......+++.+ .+..| ++-...+.|.+.++..... ..+....-.....+++ .| .
T Consensus 71 -------~~~--v~~~g~~~P~GlAvD~---~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~iav---dp~~ 134 (628)
T 4a0p_A 71 -------LEH--VVEFGLDYPEGMAVDW---LGKNLYWADTGTNRIEVSKLDGQHR-QVLVWKDLDSPRALAL---DPAE 134 (628)
T ss_dssp -------CEE--EECSSCSCCCEEEEET---TTTEEEEEETTTTEEEEEETTSTTC-EEEECSSCCCEEEEEE---ETTT
T ss_pred -------cEE--EEeCCCCCcceEEEEe---CCCEEEEEECCCCEEEEEecCCCcE-EEEEeCCCCCcccEEE---ccCC
Confidence 111 1111123466788876 54444 4444567888888765432 2221111111234444 23 3
Q ss_pred CeEEEEE-eeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEE
Q 003423 193 ALRIASG-TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (821)
Q Consensus 193 ~~~l~sg-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l 271 (821)
+.+.++- +..+.|...++.. . ....+...-...++|+++++++.|
T Consensus 135 G~lY~tD~g~~~~I~r~~~dG--------------------------------~--~~~~l~~~~~~P~GlalD~~~~~L 180 (628)
T 4a0p_A 135 GFMYWTEWGGKPKIDRAAMDG--------------------------------S--ERTTLVPNVGRANGLTIDYAKRRL 180 (628)
T ss_dssp TEEEEEECSSSCEEEEEETTS--------------------------------C--SCEEEECSCSSEEEEEEETTTTEE
T ss_pred CeEEEeCCCCCCEEEEEeCCC--------------------------------C--ceEEEECCCCCcceEEEccccCEE
Confidence 3333332 2245666666651 1 111112234567899999987666
Q ss_pred EEE-eCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEE-EEeCCCeEEEEcC-CCceeeEeecc
Q 003423 272 VSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFII-TAGEDCTCRVWGS-DGKQLKMIKEH 346 (821)
Q Consensus 272 ~s~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~-s~~~dg~i~iwd~-~~~~~~~~~~h 346 (821)
.-+ ...+.|...|+..... ..+........++++.++.++ +-...+.|...|. +|+....+...
T Consensus 181 Y~aD~~~~~I~~~d~dG~~~-----------~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~ 247 (628)
T 4a0p_A 181 YWTDLDTNLIESSNMLGLNR-----------EVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGH 247 (628)
T ss_dssp EEEETTTTEEEEEETTSCSC-----------EEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECS
T ss_pred EEEECCCCEEEEEcCCCCce-----------EEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCCceEEEecC
Confidence 544 4567888888865432 122222333456776644444 4445678887775 66555555443
No 309
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=93.78 E-value=7.1 Score=40.26 Aligned_cols=223 Identities=9% Similarity=0.069 Sum_probs=134.2
Q ss_pred CCcceeeccce--eeeeeEE--EEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCC
Q 003423 5 DLSEWRLDVGQ--YLGEISA--LCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTE 80 (821)
Q Consensus 5 ~i~~w~~~~~~--~~~~Vt~--l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~ 80 (821)
.+.|-|+.++. -..||.| .-.+ |. ...+|-=.+..|.|+|+++.+.++.....+ .|.--.|-..
T Consensus 49 ~vvIiDl~~~~~~~rrpi~AdsAIMn--P~----~~iiALrag~~lQiFnle~K~klks~~~~e--~VvfWkWis~---- 116 (494)
T 1bpo_A 49 QVVIIDMNDPSNPIRRPISADSAIMN--PA----SKVIALKAGKTLQIFNIEMKSKMKAHTMTD--DVTFWKWISL---- 116 (494)
T ss_dssp EEEEEETTSTTSCEEEECCCSEEEEC--SS----SSCEEEEETTEEEEEETTTTEEEEEEECSS--CCCEEEEEET----
T ss_pred eEEEEECCCCCcceecccccceeeeC--CC----CcEEEEecCCeEEEEchHHhhhhcceecCC--CceEEEecCC----
Confidence 46666776654 2234442 2235 65 567766668999999999999998887644 3555555522
Q ss_pred CCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCC----CCcEEEEEEeecCCCCCEEEEEE--
Q 003423 81 GSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL----SHWVFDVCFLKVCNGNRSLAIGC-- 154 (821)
Q Consensus 81 ~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~I~~~~~~~~~~~~~~l~t~~-- 154 (821)
..++...+..|.-|++..+. .+.+.+..| ...|..-..++ +.++++..+
T Consensus 117 --------~~l~lVT~taVyHWsi~~~s--------------~P~kvFdR~~~L~~~QIInY~~d~---~~kW~~l~GI~ 171 (494)
T 1bpo_A 117 --------NTVALVTDNAVYHWSMEGES--------------QPVKMFDRHSSLAGCQIINYRTDA---KQKWLLLTGIS 171 (494)
T ss_dssp --------TEEEEECSSEEEEEESSSSC--------------CCEEEEECCGGGTTCEEEEEEECT---TSSEEEEEEEE
T ss_pred --------CeEEEEcCCeeEEecccCCC--------------CchhheecchhcccceEEEEEECC---CCCeEEEEeec
Confidence 48888889999999987532 222333333 24577777777 888876443
Q ss_pred -----CCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeC---CEEEEEEcccCCcccCCCCCCCcc
Q 003423 155 -----SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY---NEIIVWKVDWEHVAPLLNSPEGNH 226 (821)
Q Consensus 155 -----~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~ 226 (821)
-.|.+.+|..+.+ ..+.+.+|..+. .++.+-+......+++-+... ++++|-++.... .+.+.+
T Consensus 172 ~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F-~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~----~~~~~f-- 243 (494)
T 1bpo_A 172 AQQNRVVGAMQLYSVDRK-VSQPIEGHAASF-AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPP----TGNQPF-- 243 (494)
T ss_dssp EETTEEEEEEEEEESTTC-CEEEECCSEEEE-EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCC----TTCCCC--
T ss_pred ccCCcccceEEEeecccc-ccchheeeeeee-EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCc----cCCCCc--
Confidence 2466788887654 334455555432 233333333333455545443 788888886210 000000
Q ss_pred cCCCCCCcceeeecccccceeeEEEE---ecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcc
Q 003423 227 AHGSSSDFKCFKLQDQQHTAVNLFRL---VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (821)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~ 290 (821)
..+.+..+ .+-.+--.++..++.-..+..-..-|.|.++|+.++..
T Consensus 244 ------------------~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~ 292 (494)
T 1bpo_A 244 ------------------PKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (494)
T ss_dssp ------------------CCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred ------------------cceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEeccccee
Confidence 11111111 12234456788888878888888999999999999765
No 310
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=93.67 E-value=6 Score=39.11 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=17.2
Q ss_pred CCCEEEEEECC------CcEEEEEccCCce
Q 003423 146 GNRSLAIGCSD------NSIRVWDISNSSI 169 (821)
Q Consensus 146 ~~~~l~t~~~d------~~i~iwd~~~~~~ 169 (821)
++.+++.|+.+ +.+.+||..+.+-
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W 130 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESW 130 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence 66677777654 4688999887654
No 311
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=93.12 E-value=10 Score=40.21 Aligned_cols=117 Identities=12% Similarity=0.099 Sum_probs=67.6
Q ss_pred CCcEEEEEEcCCCCE-EEEEeCCCeEEEEecccCcccCCCCceeeeceEEecc---c------------eeEE-EEEEc-
Q 003423 256 EGSIFRIEWSSCGSK-LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH---N------------ARVW-DCCLT- 317 (821)
Q Consensus 256 ~~~I~~l~~s~~~~~-l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h---~------------~~i~-~v~~~- 317 (821)
...-+.|+|+|+|++ .++-+....|+.++....... +. .+..+.+. . .... .++..
T Consensus 309 ~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~----~~--~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~ 382 (496)
T 3kya_A 309 PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKE----FI--TPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKN 382 (496)
T ss_dssp SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE----EC--CCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEEC
T ss_pred CCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcce----ec--ccEEecCCCCCCcccCCcccccccCCCeEEEEEcc
Confidence 345689999999995 455566788888765432110 00 00011111 0 1123 33332
Q ss_pred --------CCEEEEEeCCCeEEEEcCCCceeeEeeccc---------------C--------CCeEEEEEecC-CCEEEE
Q 003423 318 --------DSFIITAGEDCTCRVWGSDGKQLKMIKEHI---------------G--------RGIWRCLYDSL-SSLLVT 365 (821)
Q Consensus 318 --------~~~l~s~~~dg~i~iwd~~~~~~~~~~~h~---------------~--------~~i~~l~~~~~-~~~l~t 365 (821)
+.++++-.....|+.++.+|. +.++.+.. + .....|+++++ +.+.++
T Consensus 383 ~~~~~~~~g~lyVaD~~N~rIr~i~~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVa 461 (496)
T 3kya_A 383 PDYTGEEEYDFYFVDRLNFCVRKVTPEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVH 461 (496)
T ss_dssp TTCCSSCCEEEEEEEGGGTEEEEECTTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEE
T ss_pred ccccccCCCeEEEEECCCCEEEEEeCCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEE
Confidence 245555567788999987774 44443320 0 13678999996 666666
Q ss_pred EeCCCcEEEEEcCC
Q 003423 366 AGFDSAIKVHQFQA 379 (821)
Q Consensus 366 g~~dg~I~iwd~~~ 379 (821)
=..+..|+.++++.
T Consensus 462 D~~N~rIrki~~~~ 475 (496)
T 3kya_A 462 DQVGHTIRTISMEQ 475 (496)
T ss_dssp ETTTTEEEEEEECC
T ss_pred eCCCCEEEEEECCC
Confidence 66778899998855
No 312
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=92.98 E-value=7.9 Score=38.44 Aligned_cols=155 Identities=9% Similarity=0.059 Sum_probs=87.0
Q ss_pred EEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeec-------cccEEeEEe---ccccCCCCCCccceee
Q 003423 21 SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFH-------GIRLHGISC---NFINCTEGSVSTRVTF 89 (821)
Q Consensus 21 t~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~-------~~~i~~i~~---~~~~~~~~~~~~~~~~ 89 (821)
.+.+|. +. .++++++.. .+.|..||...+..... .... ...+.++.+ .+.+ +
T Consensus 16 E~~~wd--~~---~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~g-----------r 78 (334)
T 2p9w_A 16 EDTIYD--RT---RQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSK-----------R 78 (334)
T ss_dssp SCEEEE--TT---TTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCC-----------E
T ss_pred cCccCc--CC---CCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCC-----------c
Confidence 366777 54 244555553 79999999986654333 2111 123577888 4432 3
Q ss_pred EEEEE--------------cCCeEEEEEEe---ecCCCCCCCCCccccccceeeeccCC-----------CCcEEEEEEe
Q 003423 90 EVALF--------------GEKRVKLFELN---FELSPNSQYQPETCVNLSLVQSLPRL-----------SHWVFDVCFL 141 (821)
Q Consensus 90 ~l~~~--------------g~~~v~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~h-----------~~~I~~~~~~ 141 (821)
++++. ++..|..||+. ++. ......|... .....+++..
T Consensus 79 L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~-------------~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD 145 (334)
T 2p9w_A 79 LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSK-------------PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQD 145 (334)
T ss_dssp EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCC-------------CSEEEESHHHHHHHHHHHSSCCEEEEEEEEC
T ss_pred EEEEEcccccccccccccCCCCEEEEEcCCcCCCCC-------------EEEEecCccccccccccccccccCCceeEEC
Confidence 44432 25778888887 332 1111122111 1348899999
Q ss_pred ecCCCCCEEEEEECC-CcEEEEEccCCcee-EEEcc---CcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcc
Q 003423 142 KVCNGNRSLAIGCSD-NSIRVWDISNSSII-LEVHS---PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (821)
Q Consensus 142 ~~~~~~~~l~t~~~d-~~i~iwd~~~~~~~-~~~~~---~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~ 211 (821)
+ +|+..++++.- +.|...+....... .-+.. ....-...+.+ .|++.+|++....|.|..+|+.
T Consensus 146 ~---~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~---~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 146 R---DGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITF---DPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp T---TSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEE---ETTTTEEEEESSSSSEEEEECS
T ss_pred C---CCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEE---eCCCCEEEEEcCCCeEEEEcCC
Confidence 8 99988888877 77666665433221 11111 11111122333 2677766666559999999987
No 313
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=92.85 E-value=7.9 Score=38.12 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=16.4
Q ss_pred CCCEEEEEeCC-----CeEEEEecccCcc
Q 003423 267 CGSKLVSVSDD-----RSARIWEVRAEYW 290 (821)
Q Consensus 267 ~~~~l~s~s~D-----g~i~iwd~~~~~~ 290 (821)
+++.++.|+.+ ..+.+||+.+...
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 232 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAW 232 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCE
Confidence 56666777654 3688889887654
No 314
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=92.78 E-value=1.8 Score=40.07 Aligned_cols=149 Identities=7% Similarity=-0.013 Sum_probs=80.0
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeE--------EEEEEcC-CEEEEEeCC
Q 003423 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV--------WDCCLTD-SFIITAGED 327 (821)
Q Consensus 257 ~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i--------~~v~~~~-~~l~s~~~d 327 (821)
..+..++|+|+|.+.+. .+|.+.--+..+... ....+-...| .++.|.+ ..|+.. .|
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~-----------~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~d 106 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDN-----------DNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SK 106 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTT-----------CCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ET
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCc-----------ccccccccEecccccccceEEEECCCCCEEEe-CC
Confidence 36779999998885555 667655444433222 1222222333 5666763 445544 77
Q ss_pred CeEEEEcC--CCce-----eeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcce
Q 003423 328 CTCRVWGS--DGKQ-----LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEI 400 (821)
Q Consensus 328 g~i~iwd~--~~~~-----~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 400 (821)
|.|.-++. ++.. -..+....-+.+..|.+.|+|.+.+.. |+.+.-+...... . ...
T Consensus 107 G~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~------~---------~~w 169 (236)
T 1tl2_A 107 DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSN------Q---------DNW 169 (236)
T ss_dssp TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSST------T---------CCH
T ss_pred CEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCC------C---------ccc
Confidence 99988886 2211 111211111358899999999877766 7775433221100 0 000
Q ss_pred EEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEE
Q 003423 401 FSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYH 444 (821)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~ 444 (821)
+. .....-.......+.+.|.+++.++++. +|+++.
T Consensus 170 l~-------~~~~~g~~g~~~yr~l~f~~~G~l~~v~-~g~~Y~ 205 (236)
T 1tl2_A 170 LA-------RATKIGQGGWDTFKFLFFSSVGTLFGVQ-GGKFYE 205 (236)
T ss_dssp HH-------HCEEEESSSGGGEEEEEECTTSCEEEEE-TTEEEE
T ss_pred cc-------ccceeccCCcceEEEEEECCCCcEEEEe-CCeEEe
Confidence 00 0000001122345668899999888888 787764
No 315
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=92.63 E-value=0.23 Score=56.28 Aligned_cols=194 Identities=8% Similarity=-0.108 Sum_probs=100.9
Q ss_pred CcEEEEEEeecCCCCCEEEEE-ECCCcEEEEEccC----CceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEE
Q 003423 133 HWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISN----SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIV 207 (821)
Q Consensus 133 ~~I~~~~~~~~~~~~~~l~t~-~~d~~i~iwd~~~----~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~v 207 (821)
..+..++|.+ .+..|..+ ...+.|+.+++.. ......+..... ....+++.+ ..+.+.++-...+.|.+
T Consensus 406 ~~p~gla~d~---~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~-~P~glavD~--~~g~LY~tD~~~~~I~v 479 (699)
T 1n7d_A 406 RNVVALDTEV---ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ-APDGLAVDW--IHSNIYWTDSVLGTVSV 479 (699)
T ss_dssp TTCCCCEEET---TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC---CCCEECCC--SSSBCEECCTTTSCEEE
T ss_pred cceEEEcccc---ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCC-CcceEEEEe--eCCcEEEEeccCCeEEE
Confidence 3466789988 66666655 3457888888865 111111110000 011222211 23444444445677777
Q ss_pred EEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEe-CC-CeEEEEec
Q 003423 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS-DD-RSARIWEV 285 (821)
Q Consensus 208 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s-~D-g~i~iwd~ 285 (821)
.++. .......+........+|++.|.+.+|+.+. .. +.|...++
T Consensus 480 ~d~d---------------------------------g~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~ 526 (699)
T 1n7d_A 480 ADTK---------------------------------GVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 526 (699)
T ss_dssp EBSS---------------------------------SCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCS
T ss_pred EecC---------------------------------CCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeC
Confidence 7765 1111111112223457788998665544333 22 56776666
Q ss_pred ccCcccCCCCceeeeceEEe-ccceeEEEEEEc---CCEEEEEeCCCeEEEEcCCCceeeEeeccc--CCCeEEEEEecC
Q 003423 286 RAEYWKDSDSIEEVGSSVLY-GHNARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLKMIKEHI--GRGIWRCLYDSL 359 (821)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~-~h~~~i~~v~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~h~--~~~i~~l~~~~~ 359 (821)
..... ..+. ..-.....|+++ +.++++-...+.|..++++|.....+.... ......|++..+
T Consensus 527 dG~~~-----------~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~ 595 (699)
T 1n7d_A 527 NGVDI-----------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED 595 (699)
T ss_dssp SSCCC-----------CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT
T ss_pred CCCCe-----------eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC
Confidence 54322 1111 112234567887 245555567788999999775555543211 112346666654
Q ss_pred CCEEEEEeCCCcEEEEEc
Q 003423 360 SSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 360 ~~~l~tg~~dg~I~iwd~ 377 (821)
.++++....+.|..++.
T Consensus 596 -~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 596 -KVFWTDIINEAIFSANR 612 (699)
T ss_dssp -EEEEECSTTTCEEEEET
T ss_pred -EEEEEeCCCCeEEEEEc
Confidence 55556666788888886
No 316
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=92.62 E-value=8.4 Score=37.87 Aligned_cols=62 Identities=11% Similarity=0.035 Sum_probs=31.6
Q ss_pred CCCEEEEEECC-----CcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeC-----CEEEEEEcc
Q 003423 146 GNRSLAIGCSD-----NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY-----NEIIVWKVD 211 (821)
Q Consensus 146 ~~~~l~t~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d-----g~i~vwd~~ 211 (821)
++.+++.|+.+ +.+.+||..+.+-...-..+....-.++.. .++.+.+.|+.+ ..+.+||+.
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~~d~~ 183 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV----ASGVIYCLGGYDGLNILNSVEKYDPH 183 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE----ETTEEEEECCBCSSCBCCCEEEEETT
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE----ECCEEEEECCCCCCcccceEEEEeCC
Confidence 56666776543 468889987765432211111111111111 245566666654 346677765
No 317
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=92.59 E-value=9.9 Score=38.59 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=22.9
Q ss_pred CcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc
Q 003423 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (821)
Q Consensus 133 ~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~ 168 (821)
.....++|.| +|++++ +..++.|+++| .+++
T Consensus 29 ~~P~~ia~~p---dG~l~V-~e~~g~I~~~d-~~G~ 59 (354)
T 3a9g_A 29 EVPWSIAPLG---GGRYLV-TERPGRLVLIS-PSGK 59 (354)
T ss_dssp SCEEEEEEEE---TTEEEE-EETTTEEEEEC-SSCE
T ss_pred CCCeEEEEcC---CCeEEE-EeCCCEEEEEe-CCCc
Confidence 4578899999 987544 56679999987 4454
No 318
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=92.33 E-value=3.7 Score=40.80 Aligned_cols=101 Identities=13% Similarity=0.188 Sum_probs=49.9
Q ss_pred CCCEEEEEeCC-----CeEEEEecccCcccCCCCceeee--ceEEeccceeEEEEEEcCCEEEEEeCC-----CeEEEEc
Q 003423 267 CGSKLVSVSDD-----RSARIWEVRAEYWKDSDSIEEVG--SSVLYGHNARVWDCCLTDSFIITAGED-----CTCRVWG 334 (821)
Q Consensus 267 ~~~~l~s~s~D-----g~i~iwd~~~~~~~~~~~~~~~~--~~~~~~h~~~i~~v~~~~~~l~s~~~d-----g~i~iwd 334 (821)
+++.++.|+.+ ..+.+||+.+... ..+. +....+| ..+.+.+..++.||.+ ..+.+||
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W------~~~~~~p~~r~~~----~~~~~~~~iyv~GG~~~~~~~~~v~~yd 237 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEW------RMITAMNTIRSGA----GVCVLHNCIYAAGGYDGQDQLNSVERYD 237 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEE------EECCCCSSCCBSC----EEEEETTEEEEECCBCSSSBCCCEEEEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeE------eeCCCCCCccccc----eEEEECCEEEEEeCCCCCCccceEEEEe
Confidence 55666666654 4588888877643 1110 0011122 2233445666666654 5688888
Q ss_pred CCCceeeEeecc-cCCCeEEEEEecCCCEEEEEeCCC-----cEEEEEcC
Q 003423 335 SDGKQLKMIKEH-IGRGIWRCLYDSLSSLLVTAGFDS-----AIKVHQFQ 378 (821)
Q Consensus 335 ~~~~~~~~~~~h-~~~~i~~l~~~~~~~~l~tg~~dg-----~I~iwd~~ 378 (821)
+....-..+... ..+.-.+++. -++++++.||.++ .+.+||+.
T Consensus 238 ~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~ 286 (308)
T 1zgk_A 238 VETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPD 286 (308)
T ss_dssp TTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETT
T ss_pred CCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCC
Confidence 844333222211 1111112222 2567778887543 45566664
No 319
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=92.17 E-value=11 Score=38.19 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=38.8
Q ss_pred cEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce--eEEEc--cCcceeEEEEeeccCCccCeEEEEEee-C-----C
Q 003423 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI--ILEVH--SPERCLLYSMKLWGDNLEALRIASGTI-Y-----N 203 (821)
Q Consensus 134 ~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~--~~~~~--~~~~~~~~s~~~~~~s~~~~~l~sg~~-d-----g 203 (821)
....++|.| +|++++ +..++.|.+++ +++. +..+. .........+++.+.-.++..|..... . +
T Consensus 32 ~P~~ia~~p---dG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 32 VPWALAFLP---DGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CEEEEEECT---TSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CceEEEEcC---CCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 467899999 998554 56679999988 4432 22221 111223556666322111334443332 2 5
Q ss_pred EEEEEEcc
Q 003423 204 EIIVWKVD 211 (821)
Q Consensus 204 ~i~vwd~~ 211 (821)
.|..++..
T Consensus 106 ~v~r~~~~ 113 (352)
T 2ism_A 106 QVVRLRHL 113 (352)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 66666665
No 320
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=91.46 E-value=10 Score=37.42 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=16.5
Q ss_pred CCCEEEEEeCC-----CeEEEEecccCcc
Q 003423 267 CGSKLVSVSDD-----RSARIWEVRAEYW 290 (821)
Q Consensus 267 ~~~~l~s~s~D-----g~i~iwd~~~~~~ 290 (821)
+++.++.|+.+ ..+.+||+.+...
T Consensus 215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 243 (308)
T 1zgk_A 215 HNCIYAAGGYDGQDQLNSVERYDVETETW 243 (308)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence 55666777654 5688899887654
No 321
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=90.22 E-value=25 Score=38.76 Aligned_cols=226 Identities=8% Similarity=-0.119 Sum_probs=116.5
Q ss_pred EEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEE-CCCcEEEEEccCCc
Q 003423 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNSS 168 (821)
Q Consensus 90 ~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~-~d~~i~iwd~~~~~ 168 (821)
+++-...+.|+..++.... .+..... ..-.....++|++ .+..|..+. ..+.|..+++....
T Consensus 11 ~~~~~~~~~I~~i~~~~~~-------------~~~~~~~-~~~~~~~~ld~~~---~~~~ly~sD~~~~~I~r~~~~g~~ 73 (619)
T 3s94_A 11 LLLYANRRDLRLVDATNGK-------------ENATIVV-GGLEDAAAVDFVF---SHGLIYWSDVSEEAIKRTEFNKTE 73 (619)
T ss_dssp CEEEECSSBEEEECCC----------------------C-BCCSCEEEEEEET---TTTEEEEEETTTTEEEEEEC----
T ss_pred eEEEeccccEEEEeCCCCc-------------ceEEEEE-cCCCceEEEEEEe---CCCEEEEEECCCCeEEEEEccCCC
Confidence 5555667888888876431 0111111 2224578899998 666666554 46778888876543
Q ss_pred eeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceee
Q 003423 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (821)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (821)
....+....-.....+++.+ ..+.+.++-...+.|.+.+..+ ...
T Consensus 74 ~~~~v~~~~~~~P~GlAvD~--~~~~ly~~d~~~~~I~v~~~dG---------------------------------~~~ 118 (619)
T 3s94_A 74 SVQNVVVSGLLSPDGLACDW--LGEKLYWTDSETNRIEVSNLDG---------------------------------SLR 118 (619)
T ss_dssp -CEEEECSSCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTS---------------------------------CSC
T ss_pred ceEEEEeCCCCCcCeEEEEe--cCCEEEEEeCCCCEEEEEECCC---------------------------------CCE
Confidence 22222211111233444421 1455566666678898988871 111
Q ss_pred EEEEecCCCcEEEEEEcCCCCEEEEEeC--CCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEE
Q 003423 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSD--DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA 324 (821)
Q Consensus 249 ~~~~~~h~~~I~~l~~s~~~~~l~s~s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~ 324 (821)
...+...-....+|++.|.+.+|.-... .+.|...++..... . ......-.....+++. ...|+.+
T Consensus 119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~------~----~l~~~~~~~P~Glald~~~~~LY~a 188 (619)
T 3s94_A 119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR------F----IIINSEIYWPNGLTLDYEEQKLYWA 188 (619)
T ss_dssp EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC------E----EEECSSCSSEEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce------E----EEEeCCCCCCcEEEEEccCCEEEEE
Confidence 1111233345678999987655544432 34555555544322 1 1111223345778887 3555544
Q ss_pred -eCCCeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 325 -GEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 325 -~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
...+.|...+++|.....+..........+++..+ ...++-...+.|...|..
T Consensus 189 D~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 189 DAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKY 242 (619)
T ss_dssp ETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESS
T ss_pred eCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECC
Confidence 45678999999776555443211112346777655 445555567788888874
No 322
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=90.09 E-value=16 Score=36.19 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=16.1
Q ss_pred CCCEEEEEeCCC-----eEEEEecccCcc
Q 003423 267 CGSKLVSVSDDR-----SARIWEVRAEYW 290 (821)
Q Consensus 267 ~~~~l~s~s~Dg-----~i~iwd~~~~~~ 290 (821)
+++.++.|+.++ .+.+||+.+.+.
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 224 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITDNKW 224 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred CCEEEEEeccCCCCccceEEEEECCCCeE
Confidence 566677776654 577888877654
No 323
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=89.97 E-value=18 Score=36.62 Aligned_cols=58 Identities=7% Similarity=-0.024 Sum_probs=32.8
Q ss_pred eeEEEEEEc-CCEEEEEeCCCeEEEEcCC--Cce-----eeEeecccCCCeEEEEEecCCCEEEEEe
Q 003423 309 ARVWDCCLT-DSFIITAGEDCTCRVWGSD--GKQ-----LKMIKEHIGRGIWRCLYDSLSSLLVTAG 367 (821)
Q Consensus 309 ~~i~~v~~~-~~~l~s~~~dg~i~iwd~~--~~~-----~~~~~~h~~~~i~~l~~~~~~~~l~tg~ 367 (821)
.....++|. +..+++.-..+.|...+++ +.. ...+..... .+..+++.|+|.+.++..
T Consensus 268 ~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~-rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 268 FPPGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFG-RLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CCEEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSC-CEEEEEECTTSCEEEEEC
T ss_pred CCCcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCC-CeeEEEECCCCcEEEEEe
Confidence 345667766 4444554455667776663 211 122222223 488999999987666653
No 324
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=89.67 E-value=28 Score=38.47 Aligned_cols=222 Identities=10% Similarity=-0.086 Sum_probs=125.9
Q ss_pred EEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEE-ECCCcEEEEEccCCc
Q 003423 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSS 168 (821)
Q Consensus 90 ~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~-~~d~~i~iwd~~~~~ 168 (821)
.|+.+..+.|+..+++... ......+.+ -..+..++|++ .+..|..+ ..++.|..+++....
T Consensus 8 ~Ll~s~~~~I~~i~l~~~~-------------~~~~~~~~~-~~~~~~l~~d~---~~~~lywtD~~~~~I~r~~~~g~~ 70 (628)
T 4a0p_A 8 FLLFSRRADIRRISLETNN-------------NNVAIPLTG-VKEASALDFDV---TDNRIYWTDISLKTISRAFMNGSA 70 (628)
T ss_dssp EEEEEETTEEEEEESSCTT-------------CEEECCCCS-CSCEEEEEEET---TTTEEEEEETTTTEEEEEETTSCS
T ss_pred EEEEEeCCcEEEEECCCCC-------------cceEEEcCC-CCceEEEEEEC---CCCEEEEEECCCCeEEEEECCCCC
Confidence 5555577889998887432 111222222 23578999998 65555544 457888888876543
Q ss_pred eeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceee
Q 003423 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (821)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (821)
....+..... ....+++.+ ..+++.++-...+.|.+.++.. .. .
T Consensus 71 ~~~v~~~g~~-~P~GlAvD~--~~~~LY~tD~~~~~I~v~~~dG--------------------------------~~-~ 114 (628)
T 4a0p_A 71 LEHVVEFGLD-YPEGMAVDW--LGKNLYWADTGTNRIEVSKLDG--------------------------------QH-R 114 (628)
T ss_dssp CEEEECSSCS-CCCEEEEET--TTTEEEEEETTTTEEEEEETTS--------------------------------TT-C
T ss_pred cEEEEeCCCC-CcceEEEEe--CCCEEEEEECCCCEEEEEecCC--------------------------------Cc-E
Confidence 3222221111 111233311 2345555555667888888761 11 1
Q ss_pred EEEEecCCCcEEEEEEcCCCCEEEEEe--CCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEE
Q 003423 249 LFRLVGHEGSIFRIEWSSCGSKLVSVS--DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA 324 (821)
Q Consensus 249 ~~~~~~h~~~I~~l~~s~~~~~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~ 324 (821)
...+...-....+|++.|....|.-.. ..+.|...++..... ..+...-.....+++. .+.|+.+
T Consensus 115 ~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-----------~~l~~~~~~P~GlalD~~~~~LY~a 183 (628)
T 4a0p_A 115 QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-----------TTLVPNVGRANGLTIDYAKRRLYWT 183 (628)
T ss_dssp EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-----------EEEECSCSSEEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-----------EEEECCCCCcceEEEccccCEEEEE
Confidence 111113334568999998655554443 245666666655432 2223334456788887 3555554
Q ss_pred -eCCCeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 325 -GEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 325 -~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
...+.|...+++|.....+..... ....+++.. +.+.++-...+.|...|.
T Consensus 184 D~~~~~I~~~d~dG~~~~v~~~~l~-~P~glav~~-~~ly~tD~~~~~I~~~dk 235 (628)
T 4a0p_A 184 DLDTNLIESSNMLGLNREVIADDLP-HPFGLTQYQ-DYIYWTDWSRRSIERANK 235 (628)
T ss_dssp ETTTTEEEEEETTSCSCEEEEECCS-CEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred ECCCCEEEEEcCCCCceEEeeccCC-CceEEEEEC-CEEEEecCCCCEEEEEEC
Confidence 456789999997654444444333 466888875 455555556788888886
No 325
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=89.30 E-value=16 Score=43.96 Aligned_cols=226 Identities=9% Similarity=0.078 Sum_probs=124.5
Q ss_pred CCcceeeccce--eeeeeEEEE--EeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCC
Q 003423 5 DLSEWRLDVGQ--YLGEISALC--FVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTE 80 (821)
Q Consensus 5 ~i~~w~~~~~~--~~~~Vt~l~--~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~ 80 (821)
.+.|-|+.++. -..||.|=+ .+ |. ...+|-=.+.+|.|+|+++.+.+......+ .|.--.|-..
T Consensus 49 ~vvIidl~~~~~~~rrpi~AdsAIMn--P~----~~iiALrag~~lQiFnl~~k~klks~~~~e--~VvfWkWis~---- 116 (1630)
T 1xi4_A 49 QVVIIDMNDPSNPIRRPISADSAIMN--PA----SKVIALKAGKTLQIFNIEMKSKMKAHTMTD--DVTFWKWISL---- 116 (1630)
T ss_pred eEEEEECCCCCCcccccccchhhccC--CC----cceEEEecCCeEEEeehHHhhhhcccccCC--CceEEEecCC----
Confidence 45566666644 123343322 24 55 566666668999999999998888877533 3555555522
Q ss_pred CCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCC----CCcEEEEEEeecCCCCCEEEEEE--
Q 003423 81 GSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL----SHWVFDVCFLKVCNGNRSLAIGC-- 154 (821)
Q Consensus 81 ~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~I~~~~~~~~~~~~~~l~t~~-- 154 (821)
..++...+..|.-|++..... +.+.+..| ...|..-..++ +.++++..+
T Consensus 117 --------~~l~lVT~~aVyHW~~~~~s~--------------P~k~fdR~~~L~~~QIinY~~d~---~~kW~~l~gi~ 171 (1630)
T 1xi4_A 117 --------NTVALVTDNAVYHWSMEGESQ--------------PVKMFDRHSSLAGCQIINYRTDA---KQKWLLLTGIS 171 (1630)
T ss_pred --------CeeEEEcCCeEEEeccCCCCc--------------cHHHHhcchhcccCeeEEeeeCC---CCCeEEEEeec
Confidence 478888899999999974331 22222222 34566666677 888776443
Q ss_pred -----CCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEee---CCEEEEEEcccCCcccCCCCCCCcc
Q 003423 155 -----SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI---YNEIIVWKVDWEHVAPLLNSPEGNH 226 (821)
Q Consensus 155 -----~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~---dg~i~vwd~~~~~~~~~~~~~~~~~ 226 (821)
-.|.+.+|..+.+. .+.+.+|..+. .+...-+......+++-+.. .++++|-++.... .+.+.+..
T Consensus 172 ~~~~~v~G~mQLyS~er~~-sQ~iegha~~F-~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~----~~~~~f~k 245 (1630)
T 1xi4_A 172 AQQNRVVGAMQLYSVDRKV-SQPIEGHAASF-AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPP----TGNQPFPK 245 (1630)
T ss_pred cCCCcccceeeeeeccccc-chhhhHhHhhh-heeccCCCCCCceEEEEEEecCCCceEEEEecCCCc----cCCCCCcc
Confidence 25778888876542 22233333221 11222222222333333322 2688888876210 00000000
Q ss_pred cCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcc
Q 003423 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (821)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~ 290 (821)
+.++ ..+.-.+-.+--.++..++.-..+...+.-|.|.++|+.++..
T Consensus 246 --------k~~~---------~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 246 --------KAVD---------VFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (1630)
T ss_pred --------cccc---------ccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchh
Confidence 0000 0000011233345677777777777778889999999999765
No 326
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=89.01 E-value=20 Score=35.97 Aligned_cols=116 Identities=15% Similarity=0.061 Sum_probs=66.0
Q ss_pred eEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeee--ceEEeccceeEEEEEEcC-----CE
Q 003423 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG--SSVLYGHNARVWDCCLTD-----SF 320 (821)
Q Consensus 248 ~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~h~~~i~~v~~~~-----~~ 320 (821)
.+..+...-....+|+|.|+|+++++--..|.|++++..++.. ..+. +............+++++ ..
T Consensus 23 ~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~------~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~ 96 (347)
T 3das_A 23 VLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK------TELGEVPGVSPSGEGGLLGIALSPDYASDHM 96 (347)
T ss_dssp EEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE------EEEEECTTCCCBTTBSEEEEEECTTHHHHCE
T ss_pred eeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE------eeecccCceeecCCCCceeeEeccccccCCE
Confidence 3334444455678999999999888776689999998654432 1110 001122345678899974 44
Q ss_pred EEEE---eCCCeEEEEcCCC------c---ee---eEeecccCCCeEEEEEecCCCEEEEEeCC
Q 003423 321 IITA---GEDCTCRVWGSDG------K---QL---KMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (821)
Q Consensus 321 l~s~---~~dg~i~iwd~~~------~---~~---~~~~~h~~~~i~~l~~~~~~~~l~tg~~d 369 (821)
|+.. ..++.|.-|.+++ . .. ..+.......-..|+|.|+|.+.++.+..
T Consensus 97 lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~ 160 (347)
T 3das_A 97 VYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGES 160 (347)
T ss_dssp EEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCT
T ss_pred EEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCC
Confidence 5443 2445555565532 1 11 11211111123468999999877776643
No 327
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=88.36 E-value=18 Score=36.62 Aligned_cols=13 Identities=15% Similarity=0.120 Sum_probs=10.0
Q ss_pred CcEEEEEccCCce
Q 003423 157 NSIRVWDISNSSI 169 (821)
Q Consensus 157 ~~i~iwd~~~~~~ 169 (821)
+.+.+||..+.+-
T Consensus 168 ~~v~~yd~~~~~W 180 (357)
T 2uvk_A 168 KFLLSFDPSTQQW 180 (357)
T ss_dssp CEEEEEETTTTEE
T ss_pred ccEEEEeCCCCcE
Confidence 5788999887654
No 328
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=88.19 E-value=22 Score=35.24 Aligned_cols=218 Identities=11% Similarity=0.077 Sum_probs=114.5
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEe
Q 003423 358 SLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT 437 (821)
Q Consensus 358 ~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~ 437 (821)
++..++++.+.+|.|+--.+..-..+...+. ....+ .+...+..+..+..+....+++.|
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~----------g~~~~----------~lke~D~l~~~~~~~~~~~ll~~T 65 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGK----------GLSSF----------DLNDGDEIVIALCVNTHDYLFMIS 65 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCC----------CEECC----------CCCTTCCEEEEEEEETTCEEEEEE
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCC----------Cceec----------ccCCCCEEEEEEEECCCCEEEEEE
Confidence 4667889999999999887643111100000 00000 011112223333444566899999
Q ss_pred cCCcEEEEEecCCCcceeeE-------eeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCC-c
Q 003423 438 NHGYLYHTKLCDMDSVNWNK-------ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP-Q 509 (821)
Q Consensus 438 ~~g~~~~~~i~~~~~~~~~~-------~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~-~ 509 (821)
+.|.++.+...+.....+.. .........+..+...... .....+++.+.+|.++-..+..-.... .
T Consensus 66 ~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~-----~~~~~ll~~T~~G~~kr~~l~~~~~~r~~ 140 (312)
T 1suu_A 66 NEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDL-----TDDAYLLLTTASGKIARFESTDFKAVKSR 140 (312)
T ss_dssp TTSEEEEEEGGGSCC-------CBGGGTSCCCTTCCEEEEEEESCC-----CTTCEEEEEETTSEEEEEEGGGGCC----
T ss_pred CCCeEEEEEHHHCCCCCccCCCcChhhccCCCCCCEEEEEEEeccC-----CCCCEEEEEeCCCeEEEEEHHHhhccCCC
Confidence 99999998887654433221 2223334445544332211 134678888999999888876532211 1
Q ss_pred ceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEee
Q 003423 510 LSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDAS 589 (821)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s 589 (821)
....+.. .....+..+..+ .+ ...++..+.+|.+..+....-..... ......... -.-...|..+...
T Consensus 141 G~~~i~L--~~~d~lv~~~~~-~~-~~~i~l~T~~G~~~r~~~~ev~~~gR----~~~Gv~~i~---L~~~d~vv~~~~v 209 (312)
T 1suu_A 141 GVIVIKL--NDKDFVTSAEIV-FK-DEKVICLSKKGSAFIFNSRDVRLTNR----GTQGVCGMK---LKEGDLFVKVLSV 209 (312)
T ss_dssp CEECBCC--CTTCCEEEEEEE-CT-TCEEEEEETTSEEEEEEGGGSCBCCT----TBCCEECCC---CCTTCCEEEEEEC
T ss_pred cEEEEec--CCCCEEEEEEEe-CC-CCEEEEEeCCCcEEEEEHHHccccCC----CCCCeEeEE---eCCCCEEEEEEEE
Confidence 1112211 223445555443 33 35667778899988888765311111 001111111 1124556666555
Q ss_pred cCCCEEEEEcCCCcEEEEecCc
Q 003423 590 FEDEVLFCGDLRGNLVLFPLLR 611 (821)
Q Consensus 590 ~~~~~L~sgs~dG~i~iw~~~~ 611 (821)
.++..|++.+..|..+..+++.
T Consensus 210 ~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 210 KENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp TTCSEEEEEETTSEEEEEEGGG
T ss_pred CCCCeEEEEECCCceEEEEHHH
Confidence 5667788889999999998864
No 329
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=87.92 E-value=22 Score=37.43 Aligned_cols=106 Identities=8% Similarity=0.035 Sum_probs=59.8
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEe------ccceeEEEEEEcC-----CEEEEE
Q 003423 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY------GHNARVWDCCLTD-----SFIITA 324 (821)
Q Consensus 256 ~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------~h~~~i~~v~~~~-----~~l~s~ 324 (821)
-....+|+|.|+|+++++-...+.|++++..++.. ..+ ..+. ........++|++ ..|+.+
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~------~~~--~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~ 97 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSV------KTV--FQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE------EEE--EECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE------eEE--ecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence 34567999999999888765545788887654432 111 1111 1245577899983 455544
Q ss_pred eC-------------CCeEEEEcCCC---c-----eee-EeecccCCCeEEEEEecCCCEEEEEeCC
Q 003423 325 GE-------------DCTCRVWGSDG---K-----QLK-MIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (821)
Q Consensus 325 ~~-------------dg~i~iwd~~~---~-----~~~-~~~~h~~~~i~~l~~~~~~~~l~tg~~d 369 (821)
.. ...|.-++.+. + .+. .+..........|+|.|+|.+.++.+..
T Consensus 98 ~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~ 164 (454)
T 1cru_A 98 GTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQ 164 (454)
T ss_dssp EEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCT
T ss_pred EeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCC
Confidence 42 12454455421 1 111 1221111136789999999877776653
No 330
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=87.69 E-value=31 Score=36.55 Aligned_cols=163 Identities=9% Similarity=0.077 Sum_probs=85.8
Q ss_pred eEEEEEeccC-CCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeec--cccEEeEEe-------ccccCCCCCCcccee
Q 003423 20 ISALCFVHLP-SHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFH--GIRLHGISC-------NFINCTEGSVSTRVT 88 (821)
Q Consensus 20 Vt~l~~~~~p-~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~--~~~i~~i~~-------~~~~~~~~~~~~~~~ 88 (821)
...|+|. | + .+.++++-. ...|++.|++++.+...+.... -.+..+|+| ++++ .
T Consensus 141 p~~la~d--p~~---~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G----------~ 205 (496)
T 3kya_A 141 NGRLAFD--PLN---KDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEA----------E 205 (496)
T ss_dssp EEEEEEE--TTE---EEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTT----------C
T ss_pred CCEEEEc--cCC---CCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCC----------C
Confidence 5688999 8 4 233444433 3689999999887765444321 235788888 6443 2
Q ss_pred eEEEE-EcCC----eEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCE-EEEEECCCcEEEE
Q 003423 89 FEVAL-FGEK----RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRS-LAIGCSDNSIRVW 162 (821)
Q Consensus 89 ~~l~~-~g~~----~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~-l~t~~~d~~i~iw 162 (821)
.++++ ..++ ...++-+.... ...+.. ......+..+. ....++++| ++.. +++-..++.|..+
T Consensus 206 ~lyvad~~~~~~~~~~~V~~i~r~~--~G~~~~--~~~~~~v~~~~----~p~giavdp---~~g~LYvtd~~~g~V~r~ 274 (496)
T 3kya_A 206 YMIVAIDYDGKGDESPSVYIIKRNA--DGTFDD--RSDIQLIAAYK----QCNGATIHP---INGELYFNSYEKGQVFRL 274 (496)
T ss_dssp EEEEEECCCTTGGGEEEEEEEECCT--TSCCST--TSCEEEEEEES----CCCCEEECT---TTCCEEEEETTTTEEEEE
T ss_pred EEEEEeCCCCCcccCceEEEEecCC--CCceee--cccceeeccCC----CceEEEEcC---CCCeEEEEECCCCEEEEE
Confidence 23333 3331 33344443211 011100 00001222222 234678888 5554 4455567789999
Q ss_pred Ecc-------CCce-----------eEE-EccCcceeEEEEeeccCCccCeE-EEEEeeCCEEEEEEcc
Q 003423 163 DIS-------NSSI-----------ILE-VHSPERCLLYSMKLWGDNLEALR-IASGTIYNEIIVWKVD 211 (821)
Q Consensus 163 d~~-------~~~~-----------~~~-~~~~~~~~~~s~~~~~~s~~~~~-l~sg~~dg~i~vwd~~ 211 (821)
|+. ++.. ... +..+.....+.+++ ++++.. .++-+..+.|+.++..
T Consensus 275 d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~---~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 275 DLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFI---HPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp CHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEE---CTTSSEEEEEETTTTEEEEEEEE
T ss_pred ecccccccccCceeecccccccccccceeEecCCCCCceEEEE---cCCCCEEEEEeCCCCEEEEEecC
Confidence 997 5543 122 22222233455666 577874 4444567888887765
No 331
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=87.69 E-value=26 Score=35.59 Aligned_cols=168 Identities=12% Similarity=0.135 Sum_probs=90.7
Q ss_pred ecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEe-ecCCeEEE
Q 003423 357 DSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHL-TSEDTLYI 435 (821)
Q Consensus 357 ~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f-~~~~~~l~ 435 (821)
-|+..++++.+.+|.|+--.++....+.-.+. ....+. +. ..+.+..+.. +....+++
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~----------g~~~~~----------lk-e~D~l~~~~~~~t~d~ll~ 62 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGR----------GRSAAS----------TK-EEDFIDQLWLVNTHDTLLT 62 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCC----------CSEEEE----------CS-CCCCEEEEEEECTTCEEEE
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCC----------Cceecc----------cC-CCCEEEEEEEecCCCEEEE
Confidence 46778999999999999876632110000000 000000 11 1233444333 34557889
Q ss_pred EecCCcEEEEEecCCCccee----eE---eeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCC
Q 003423 436 ATNHGYLYHTKLCDMDSVNW----NK---ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP 508 (821)
Q Consensus 436 ~~~~g~~~~~~i~~~~~~~~----~~---~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~ 508 (821)
.|+.|+++.++.++.....+ .+ ++.......+..+-..... ....++++.+..|.++-..+..-....
T Consensus 63 fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~-----~~~~~ll~~T~~G~vKrt~l~e~~~~~ 137 (370)
T 3l6v_A 63 FTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREY-----ADNRYVFMATRNGTVKKTPLSEFAFRL 137 (370)
T ss_dssp EETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCC-----CTTCEEEEEETTSEEEEEEGGGGCSCC
T ss_pred EeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCCCCCEEEEEEEeccC-----CCCcEEEEEeCCCeEEEeEHHHhhccc
Confidence 99999999998887544322 11 2223445555554433221 234689999999999998876543221
Q ss_pred -cceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecC
Q 003423 509 -QLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCD 554 (821)
Q Consensus 509 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 554 (821)
.....+.. .....+..+..+ .+...++..+.+|.+..|....
T Consensus 138 ~~G~~ai~L--~~~d~lv~v~~~--~~~~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 138 ARGKIAINL--DEGDALVGVALT--DGDRDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp TTCEESSCC--CTTCCEEEEEEE--CSCCEEEEEETTSEEEEEEGGG
T ss_pred CCceEEEEe--CCCCEEEEEEEe--CCCceEEEEeCCCeEEEEEccc
Confidence 11122222 223334444433 2334566677788877777654
No 332
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=83.32 E-value=41 Score=33.95 Aligned_cols=105 Identities=14% Similarity=0.009 Sum_probs=58.2
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC-----CEEEEEeC----
Q 003423 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-----SFIITAGE---- 326 (821)
Q Consensus 256 ~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~-----~~l~s~~~---- 326 (821)
-....+++|.|+|+++++ ..++.|++++. ++.. .+..+ .....-......+++++ ..|+.+..
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~----~~~~~--~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~ 99 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKK----LVASF--DVANVGEAGLLGLALHPEFPKKSWVYLYASYFAE 99 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEECS-SCEE----EEEEC--CCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECG
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCce----Eeecc--ceeecCCCceeeEEeCCCCCcCCEEEEEEeccCC
Confidence 355789999999986665 55699988873 2211 01100 00111234578899985 36665543
Q ss_pred C----CeEEEEcCCCc------e---eeEeecccCCCeEEEEEecCCCEEEEEeC
Q 003423 327 D----CTCRVWGSDGK------Q---LKMIKEHIGRGIWRCLYDSLSSLLVTAGF 368 (821)
Q Consensus 327 d----g~i~iwd~~~~------~---~~~~~~h~~~~i~~l~~~~~~~~l~tg~~ 368 (821)
+ ..|..|+.++. . +..+..........++|.|+|.+.++-+.
T Consensus 100 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~ 154 (354)
T 3a9g_A 100 GGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGD 154 (354)
T ss_dssp GGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCC
T ss_pred CCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECC
Confidence 2 56777776432 1 11122111112357899999987776543
No 333
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=82.09 E-value=8.6 Score=35.56 Aligned_cols=146 Identities=10% Similarity=-0.046 Sum_probs=76.3
Q ss_pred CCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEecc--ceeEEEEEEcC-CEEEEEeCCCeEEEEcC-CCcee--
Q 003423 267 CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH--NARVWDCCLTD-SFIITAGEDCTCRVWGS-DGKQL-- 340 (821)
Q Consensus 267 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h--~~~i~~v~~~~-~~l~s~~~dg~i~iwd~-~~~~~-- 340 (821)
....|+...+| +++.=....... -.........++ =..+..++|+| ..|+.. .+|.+.-.+. +....
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~-----~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W 75 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKN-----DNWLARATLIGKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNW 75 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTT-----CCHHHHSEEEESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCH
T ss_pred cceEEEEEeCC-cEEecCCCCCcc-----cchhhhccccCccccccceeEEECCCccEEEE-eCCeEEEECCCCCCcccc
Confidence 44567777777 655444443321 000000233333 13567899994 556666 7777666555 21110
Q ss_pred ---eEeecccC-CCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccC
Q 003423 341 ---KMIKEHIG-RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTD 416 (821)
Q Consensus 341 ---~~~~~h~~-~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (821)
.+..+..+ ....++.|+|+|.+.++ .||.|.-++.....-.. +...... .-.
T Consensus 76 ~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~---------Wl~~a~~-------------vg~ 131 (236)
T 1tl2_A 76 MGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDN---------WIARATE-------------VGS 131 (236)
T ss_dssp HHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCC---------HHHHSEE-------------EEC
T ss_pred cccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCc---------eeccccE-------------ecc
Confidence 11111111 11368899999987777 56988776652110000 0000000 000
Q ss_pred CCCcceEEEEeecCCeEEEEecCCcEEE
Q 003423 417 SKSEYVRCLHLTSEDTLYIATNHGYLYH 444 (821)
Q Consensus 417 ~~~~~i~~l~f~~~~~~l~~~~~g~~~~ 444 (821)
..=..+..|.|.|+|.+++.+ +|.++.
T Consensus 132 ~gw~~~~~lff~p~G~Lyav~-dg~lyr 158 (236)
T 1tl2_A 132 GGWSGFKFLFFHPNGYLYAVH-GQQFYK 158 (236)
T ss_dssp SSGGGEEEEEECTTSCEEEEE-TTEEEE
T ss_pred CCCCceEEEEECCCceEEEEe-CCcEEe
Confidence 011347999999999999999 888654
No 334
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=81.53 E-value=45 Score=33.16 Aligned_cols=169 Identities=12% Similarity=0.123 Sum_probs=97.9
Q ss_pred eecCCeEEEEecCCcEEEEEecCCCcceee----E---eeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEE
Q 003423 427 LTSEDTLYIATNHGYLYHTKLCDMDSVNWN----K---ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIV 499 (821)
Q Consensus 427 f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~----~---~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~ 499 (821)
-+....+++.|+.|+++.++.++.....|. + +........+..+-..... ++...+++.+.+|.++-.
T Consensus 50 ~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~-----~~e~~~v~~T~~G~iKr~ 124 (327)
T 3uc1_A 50 CSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGY-----TDAPYLVLATRNGLVKKS 124 (327)
T ss_dssp EETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESST-----TSSSEEEEEETTSEEEEE
T ss_pred eCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccC-----CCCCEEEEEcCCCEEEEe
Confidence 345668899999999999988876654322 1 2333345555554333321 346799999999999998
Q ss_pred EecCCCCCCc-ceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeec--CCCCcccccCCccceeeeeEEEe
Q 003423 500 RVVGDVHTPQ-LSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLC--DPFSSVCYESSKTNNVFLVAEFS 576 (821)
Q Consensus 500 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~ 576 (821)
.+..-..... ....+.. .....+..+..+.. ...++..+..|.+..+... .-..... . ....... .
T Consensus 125 ~l~~~~~~~r~G~~~i~l--ke~D~lv~~~~~~~--~d~ill~T~~G~~~rf~~~~~eip~~gr--~--a~Gv~~i---~ 193 (327)
T 3uc1_A 125 KLTDFDSNRSGGIVAVNL--RDNDELVGAVLCSA--GDDLLLVSANGQSIRFSATDEALRPMGR--A--TSGVQGM---R 193 (327)
T ss_dssp EGGGGCCCCSSCEESCBC--CTTCCEEEEEEECT--TCEEEEEETTSEEEEEECCTTTSCCCCT--T--SBCEESS---C
T ss_pred EHHHhhccccCceEEEEE--CCCCEEEEEEEecC--CCEEEEEECCCeEEEEECcccccCcCCc--C--CCCeeee---c
Confidence 8765332211 1111111 12333444443332 3456667788888877766 2211000 0 0111111 1
Q ss_pred cccCceEEEEEeecCCCEEEEEcCCCcEEEEecCc
Q 003423 577 SCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (821)
Q Consensus 577 ~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~ 611 (821)
-.-...|.++...+++..|+..+..|.++.-.++.
T Consensus 194 L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 194 FNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp CCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 12355677777666677899999999999888764
No 335
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=80.49 E-value=46 Score=32.70 Aligned_cols=218 Identities=11% Similarity=0.094 Sum_probs=113.5
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEe
Q 003423 358 SLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT 437 (821)
Q Consensus 358 ~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~ 437 (821)
|+...+++.+.+|.|+--.++.-..+.-.+. .... ..+...+..+..+.-+....+++.|
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~----------g~~~----------~~~ke~D~l~~~~~~~~~~~ll~fT 60 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGK----------GKSA----------ARIKEEDFIDRLLVANTHDHILCFS 60 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC----------------------------------------CCEEEEEEEETTCEEEEEE
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCC----------Ccee----------eeeCCCCEEEEEEEECCCCEEEEEE
Confidence 3556788999999998776643111100000 0000 0011112223333445567899999
Q ss_pred cCCcEEEEEecCCCccee----eE---eeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCC-c
Q 003423 438 NHGYLYHTKLCDMDSVNW----NK---ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP-Q 509 (821)
Q Consensus 438 ~~g~~~~~~i~~~~~~~~----~~---~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~-~ 509 (821)
+.|+++.+..++.....+ .+ +........+..+...... .++..+++.+.+|.++-..+..-.... .
T Consensus 61 ~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~-----~~~~~ll~~T~~G~~Krt~l~e~~~~~r~ 135 (307)
T 1zi0_A 61 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEF-----EEGVKVFMATANGTVKKTVLTEFNRLRTA 135 (307)
T ss_dssp TTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCC-----CTTCEEEEEETTSEEEEEEGGGGTTCCTT
T ss_pred CCCEEEEEEhhHCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccC-----CCCcEEEEEeCCCeEEEEEHHHhhccccC
Confidence 999999998877554432 11 2233344555554332211 234678899999999998876432221 1
Q ss_pred ceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEee
Q 003423 510 LSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDAS 589 (821)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s 589 (821)
....+.... ...+..+..+ .. ...++..+.+|.+..+....-..... . ...... +.-.-...|.++...
T Consensus 136 G~~~i~l~~--~d~lv~~~~~-~~-~~~i~l~T~~G~~irf~~~~v~~~gr--~--a~Gv~~---i~L~~~d~Vv~~~~~ 204 (307)
T 1zi0_A 136 GKVAIKLVD--GDELIGVDLT-SG-EDEVMLFSAEGKVVRFKESSVRAMGC--N--TTGVRG---IRLGEGDKVVSLIVP 204 (307)
T ss_dssp CEESSCCCT--TCCEEEEEEE-CT-TCEEEEEETTSEEEEEEGGGSCBCCT--T--CCCEEC---CCCCTTCCEEEEECC
T ss_pred CeEEEEECC--CCEEEEEEEe-CC-CCEEEEECCCCcEEEEEHHHcCccCC--C--CCCeEe---EEeCCCCEEEEEEEe
Confidence 111222221 2334444433 22 34566677788877777654311100 0 001111 111224567777665
Q ss_pred cCCCEEEEEcCCCcEEEEecCc
Q 003423 590 FEDEVLFCGDLRGNLVLFPLLR 611 (821)
Q Consensus 590 ~~~~~L~sgs~dG~i~iw~~~~ 611 (821)
.++..|++.+..|.++-.+++.
T Consensus 205 ~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 205 RGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp CSSCEEEEEETTSEEEEECGGG
T ss_pred cCCCEEEEEEcCCceEEEEHHH
Confidence 5667888999999999888754
No 336
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=80.21 E-value=52 Score=33.11 Aligned_cols=28 Identities=21% Similarity=0.496 Sum_probs=21.4
Q ss_pred cEEEEEEeecCCCCCEEEEEECCCcEEEEEc
Q 003423 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDI 164 (821)
Q Consensus 134 ~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~ 164 (821)
....|+|.| +|+.|.++...|.|++++.
T Consensus 19 ~P~~i~~~p---dG~~l~V~e~~G~i~~~~~ 46 (353)
T 2g8s_A 19 HPWALAFLP---DNHGMLITLRGGELRHWQA 46 (353)
T ss_dssp SEEEEEECS---TTCCEEEEETTTEEEEEET
T ss_pred CcEEEEEcC---CCCEEEEEeCCceEEEEeC
Confidence 467899999 9983445567899999884
No 337
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=79.93 E-value=33 Score=34.54 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=16.1
Q ss_pred CCCEEEEEEC-C---------CcEEEEEccCCce
Q 003423 146 GNRSLAIGCS-D---------NSIRVWDISNSSI 169 (821)
Q Consensus 146 ~~~~l~t~~~-d---------~~i~iwd~~~~~~ 169 (821)
++.+++.|+. + +.+.+||..+.+-
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W 98 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW 98 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence 5666666664 2 4688899887653
No 338
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=79.53 E-value=79 Score=34.78 Aligned_cols=237 Identities=13% Similarity=-0.027 Sum_probs=113.3
Q ss_pred cceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCC
Q 003423 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQY 114 (821)
Q Consensus 35 ~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~ 114 (821)
..+|+-.....|+..|+.......++....-....++.+++.. . ..+++=...+.|..++++...
T Consensus 9 ~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~-----~----~ly~sD~~~~~I~r~~~~g~~------ 73 (619)
T 3s94_A 9 APLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSH-----G----LIYWSDVSEEAIKRTEFNKTE------ 73 (619)
T ss_dssp -CCEEEECSSBEEEECCC---------CBCCSCEEEEEEETTT-----T----EEEEEETTTTEEEEEEC----------
T ss_pred CceEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCC-----C----EEEEEECCCCeEEEEEccCCC------
Confidence 3577778888999999986532222333233357888888541 0 122222345777777765321
Q ss_pred CCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEE-ECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCcc-
Q 003423 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE- 192 (821)
Q Consensus 115 ~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~- 192 (821)
.....+..--.....+++.+ .+..|..+ ...+.|.+.+....... .+....-.....+++ .+.
T Consensus 74 --------~~~~v~~~~~~~P~GlAvD~---~~~~ly~~d~~~~~I~v~~~dG~~~~-~l~~~~l~~P~~Iav---dp~~ 138 (619)
T 3s94_A 74 --------SVQNVVVSGLLSPDGLACDW---LGEKLYWTDSETNRIEVSNLDGSLRK-VLFWQELDQPRAIAL---DPSS 138 (619)
T ss_dssp ---------CEEEECSSCSCEEEEEEET---TTTEEEEEETTTTEEEEEETTSCSCE-EEECSSCSCCCCEEE---ETTT
T ss_pred --------ceEEEEeCCCCCcCeEEEEe---cCCEEEEEeCCCCEEEEEECCCCCEE-EEEeCCCCCCceEEE---ecCC
Confidence 01112222224678899987 65555544 45688999998654322 221111000112222 133
Q ss_pred CeEEEEEe-eCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEE
Q 003423 193 ALRIASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (821)
Q Consensus 193 ~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l 271 (821)
+.+.++-. ..+.|...++.. + .........-...++|+++++++.|
T Consensus 139 g~ly~tD~g~~~~I~r~~~dG--------------------------------~-~~~~l~~~~~~~P~Glald~~~~~L 185 (619)
T 3s94_A 139 GFMYWTDWGEVPKIERAGMDG--------------------------------S-SRFIIINSEIYWPNGLTLDYEEQKL 185 (619)
T ss_dssp TEEEEEECSSSCEEEEEETTS--------------------------------C-SCEEEECSSCSSEEEEEEETTTTEE
T ss_pred CeEEEeccCCCCEEEEEECCC--------------------------------C-ceEEEEeCCCCCCcEEEEEccCCEE
Confidence 33333321 234555555541 0 1111112234567899999976665
Q ss_pred EEE-eCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEE-eCCCeEEEEcC-CCceeeEee
Q 003423 272 VSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITA-GEDCTCRVWGS-DGKQLKMIK 344 (821)
Q Consensus 272 ~s~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~-~~dg~i~iwd~-~~~~~~~~~ 344 (821)
.-+ ...+.|...|+..... +. ...+......++++.++.++.+ ...+.|...|. +|+....+.
T Consensus 186 Y~aD~~~~~I~~~~~dG~~~------~~----~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~~~i~ 251 (619)
T 3s94_A 186 YWADAKLNFIHKSNLDGTNR------QA----VVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIH 251 (619)
T ss_dssp EEEETTTCCEEEESSSCCEE------C-------------CCCEEESSSEEEEECTTTCSEEEEESSSCCCCEECC
T ss_pred EEEeCCCCeEEEecCCCCcc------EE----EEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCcccEEEe
Confidence 544 4556788888765332 11 1111111223555554444444 35566777776 555444443
No 339
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=78.29 E-value=56 Score=32.37 Aligned_cols=213 Identities=12% Similarity=0.156 Sum_probs=114.7
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEe
Q 003423 358 SLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT 437 (821)
Q Consensus 358 ~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~ 437 (821)
|+...+++.+.+|.|+--.+.....+.. ..+ .+...+..+..+.-+..+.+++.|
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~----~~~---------------------~lke~D~l~~~~~~~t~d~ll~fT 57 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNG----QDF---------------------AMKDTDRLLAMLEMNTKDVLLLFT 57 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTT----CCC---------------------CCCTTCCEEEEEEEETTSEEEEEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCc----ccc---------------------ccCCCCEEEEEEEECCCCEEEEEE
Confidence 5667889999999998776632100000 000 011112223333445567899999
Q ss_pred cCCcEEEEEecCCCcceee-------EeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCC--
Q 003423 438 NHGYLYHTKLCDMDSVNWN-------KILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP-- 508 (821)
Q Consensus 438 ~~g~~~~~~i~~~~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~-- 508 (821)
+.|+++.+..++.....+. ..........+..+...... ..+.++++.+.+|.++-..+..-....
T Consensus 58 ~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~-----~~~~~ll~~T~~G~iKrt~l~e~~~~~r~ 132 (323)
T 1wp5_A 58 NKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDF-----ELNGYFLFVTRNGMVKKTELKHYKAQRYS 132 (323)
T ss_dssp TTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCT-----TSSCEEEEEETTSEEEEEEGGGGCCSCCS
T ss_pred CCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEeccc-----CCCceEEEEeCCCeEEEeEHHHhhhcccc
Confidence 9999999988775443321 12223344455544322211 124678889999999998876533322
Q ss_pred cceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEe
Q 003423 509 QLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDA 588 (821)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~ 588 (821)
.....+.... ...+..+..+. +...++..+.+|.+..+....-..... ....... +.-.-...|.++..
T Consensus 133 ~G~~ai~l~e--~d~lv~~~~~~--~~~~i~l~T~~G~~irf~~~ev~~~gR----~a~GV~~---i~L~~~d~Vv~~~~ 201 (323)
T 1wp5_A 133 KPLTGINLKN--DDQVVDVHLTD--GMNELFLVTHNGYALWFDESEVSIVGV----RAAGVKG---MNLKEGDYIVSGQL 201 (323)
T ss_dssp SCEECSCCCT--TCCEEEEEEEC--SCSEEEEEETTSEEEEEEGGGSCBCCS----SCCCEEC---CCCCTTCCEEEEEE
T ss_pred CceEEEEeCC--CCEEEEEEEeC--CCCEEEEEeCCCcEEEEEHHHCcccCC----CCcCEEE---EEeCCCCEEEEEEE
Confidence 2222222222 23344444332 234566677888888887764311100 0111111 11122455666655
Q ss_pred ecCCC-EEEEEcCCCcEEEEecCc
Q 003423 589 SFEDE-VLFCGDLRGNLVLFPLLR 611 (821)
Q Consensus 589 s~~~~-~L~sgs~dG~i~iw~~~~ 611 (821)
.+++. .|++.+..|..+..+++.
T Consensus 202 ~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 202 ITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp ECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EcCCCcEEEEEECCCceEEEEHHH
Confidence 44455 788888999988887764
No 340
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=77.56 E-value=1e+02 Score=34.92 Aligned_cols=145 Identities=10% Similarity=0.120 Sum_probs=78.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc-CCEEEEEeCCCeEEEEcCC
Q 003423 258 SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGSD 336 (821)
Q Consensus 258 ~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~l~s~~~dg~i~iwd~~ 336 (821)
.|.++...+++..|-.|.. +-+..+|..+++. ... ..+ ....|.++... ...|..|..+ -+.+++..
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~------~~~--~~l--~~~~i~~i~~d~~g~lWigT~~-Gl~~~~~~ 259 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQI------KQT--EAF--HNNSIKSLALDGNGDLLAGTDN-GLYVYHND 259 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEE------EEE--EEE--EEEEEEEEEECTTCCEEEEETT-EEEEECCT
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeE------Eec--cCC--CCCeEEEEEEcCCCCEEEEeCC-ceeEEecC
Confidence 4888888777664433443 4577788766433 111 111 23457787776 4566666654 57788874
Q ss_pred CceeeEeecc-------cCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcc
Q 003423 337 GKQLKMIKEH-------IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFS 409 (821)
Q Consensus 337 ~~~~~~~~~h-------~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (821)
......+... ....|.++..+.+|. |-.|...| +.++..... . ..+... ..
T Consensus 260 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~~-~----------------~~~~~~--~~- 317 (758)
T 3ott_A 260 TTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNSA-L----------------QFIPIS--QI- 317 (758)
T ss_dssp TSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC--C----------------EEEEHH--HH-
T ss_pred CCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCCc-e----------------eEEecc--cC-
Confidence 4333333211 112488888887776 44455556 544432110 0 000000 00
Q ss_pred cceeccCCCCcceEEEEeecCCeEEEEecCC
Q 003423 410 EQIRLTDSKSEYVRCLHLTSEDTLYIATNHG 440 (821)
Q Consensus 410 ~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g 440 (821)
........|.++.-..+|.+.+++..|
T Consensus 318 ----~~~~~~~~v~~i~~D~~g~lWiGt~~G 344 (758)
T 3ott_A 318 ----TGTGDGNQFYSLFRDSKGFYWFGGANG 344 (758)
T ss_dssp ----SCSCCCCBEEEEEECTTCCEEEEETTE
T ss_pred ----CCCCCCceEEEEEEcCCCCEEEeeCCc
Confidence 000112458888888899999998654
No 341
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=77.03 E-value=55 Score=31.57 Aligned_cols=166 Identities=11% Similarity=0.042 Sum_probs=95.7
Q ss_pred EeecCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCC
Q 003423 426 HLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDV 505 (821)
Q Consensus 426 ~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~ 505 (821)
.......+++.|+.|+++...+++.....+..+ ......+..+-. .. + ++..+++.+.+|.++-..+.+-.
T Consensus 31 ~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~l--l~~~e~i~~v~~-~~---~---~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 31 RVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSL--KSREEKIVGAFI-RE---K---FGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp EEETTSCEEEEETTSEEEEECSHHHHTSEECCC--SSTTCCEEEEEE-GG---G---SCSEEEEEETTSEEEEEEGGGTT
T ss_pred EECCCCEEEEEcCCCeEEEEEhhhCccCccccc--CCCCCEEEEEEC-Cc---C---CCCEEEEEeCCCEEEEEEHHHhh
Confidence 344456889999999999888776544443333 444555555432 21 0 34689999999999998876543
Q ss_pred CCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEE
Q 003423 506 HTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMC 585 (821)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 585 (821)
........+.. .....+..+..+. +...++..+.+|.+..+....-...... ....... .+ .-...|..
T Consensus 102 ~~~~G~~~i~l--kegD~l~~~~~~~--~~~~ill~T~~G~~~r~~~~eip~~gR~----a~Gv~~i-~L--~~~d~vv~ 170 (276)
T 3no0_A 102 YKAQGMPIIKL--TEGDEVVSIASSV--DETHILLFTKKGRVARFSVREVPPSTPG----ARGVQGI-KL--EKNDETSG 170 (276)
T ss_dssp TCSTTEECSCC--CTTCCEEEEEECC--SSCEEEEEETTSEEEEEEGGGSCBCCTT----CCCEECC-CC--CTTCCEEE
T ss_pred hhcCCeEEEec--CCCCEEEEEEEeC--CCCEEEEEECCCEEEEEEhhhCCCcCCC----CCCEEEE-cc--CCCCEEEE
Confidence 11111111111 1223344443332 3346667778898887776543211100 0111111 12 12355777
Q ss_pred EEeecCCCEEEEEcCCCcEEEEecCc
Q 003423 586 LDASFEDEVLFCGDLRGNLVLFPLLR 611 (821)
Q Consensus 586 l~~s~~~~~L~sgs~dG~i~iw~~~~ 611 (821)
+...+++..|+..+..|.++..+++.
T Consensus 171 ~~~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 171 LRIWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp EEEESSCSEEEEEETTSCEEEEEGGG
T ss_pred EEEeCCCCEEEEEeCCCcEEEeEHHH
Confidence 66666677899999999999998764
No 342
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=74.21 E-value=69 Score=31.39 Aligned_cols=62 Identities=10% Similarity=0.129 Sum_probs=31.3
Q ss_pred CCCEEEEEECC-------CcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEee------CCEEEEEEcc
Q 003423 146 GNRSLAIGCSD-------NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI------YNEIIVWKVD 211 (821)
Q Consensus 146 ~~~~l~t~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~------dg~i~vwd~~ 211 (821)
++..++.|+.+ +.+.+||..+.+-...-..+....-.++.. .++.+.+.|+. .+.+.+||..
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~~yd~~ 183 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS----HNGMIYCLGGKTDDKKCTNRVFIYNPK 183 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE----ETTEEEEECCEESSSCBCCCEEEEETT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE----ECCEEEEEcCCCCCCCccceEEEEcCC
Confidence 56677777653 357788887765432211121111111211 24556666654 2347777766
No 343
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=69.19 E-value=85 Score=35.14 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=32.1
Q ss_pred CCCEEEEEECC------CcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCC--EEEEEEcc
Q 003423 146 GNRSLAIGCSD------NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN--EIIVWKVD 211 (821)
Q Consensus 146 ~~~~l~t~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg--~i~vwd~~ 211 (821)
++..++.|+.+ +.+.+||..+.+-...-..+....-.++... .++.+++.|+.++ .+.+||..
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~---~~~~iyv~GG~~~~~~v~~yd~~ 521 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSL---PDGNVLILGGVTEGPAMLLYNVT 521 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEEC---TTSCEEEECCBCSSCSEEEEETT
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEE---cCCEEEEECCCCCCCCEEEEECC
Confidence 45566666543 3578888887543221111111111112211 2566677776544 57788876
No 344
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=67.90 E-value=1.6e+02 Score=33.12 Aligned_cols=452 Identities=11% Similarity=0.055 Sum_probs=209.6
Q ss_pred eeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCC
Q 003423 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (821)
Q Consensus 18 ~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~ 97 (821)
..|.++... .+ + .|..|.+.-|..||..+.+...... .....|..+... + ..+.++..+
T Consensus 63 ~~i~~i~~d--~~----g-~lWigT~~Gl~~yd~~~~~f~~~~~-~~~~~i~~i~~~-~-----------g~lWigt~~- 121 (758)
T 3ott_A 63 TRIYCGVII--DN----T-YLYMGTDNGILVYNYRADRYEQPET-DFPTDVRTMALQ-G-----------DTLWLGALN- 121 (758)
T ss_dssp SCEEEEEEE--TT----T-EEEEEETTEEEEEETTTTEECCCSC-CCCSCEEEEEEE-T-----------TEEEEEETT-
T ss_pred ceEEEEEEc--CC----C-cEEEEeCCCeEEEeCCCCEEECccc-CCCceEEEEEec-C-----------CcEEEEcCC-
Confidence 347777766 54 3 4555554458899998865432100 011235554322 1 123333333
Q ss_pred eEEEEEEeecCCCCCCCCCccccccceeeec-c-CCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEcc
Q 003423 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSL-P-RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS 175 (821)
Q Consensus 98 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~ 175 (821)
-+..|+...+. +...... . .....|.++.... ++.+.+ |+.+ -+..+|..+++.. .+..
T Consensus 122 Gl~~~~~~~~~-------------~~~~~~~~~~l~~~~i~~i~~d~---~g~lWi-gt~~-Gl~~~~~~~~~~~-~~~~ 182 (758)
T 3ott_A 122 GLYTYQLQSRK-------------LTSFDTRRNGLPNNTIYSIIRTK---DNQIYV-GTYN-GLCRYIPSNGKFE-GIPL 182 (758)
T ss_dssp EEEEEETTTCC-------------EEEECHHHHCCSCSCEEEEEECT---TCCEEE-EETT-EEEEEETTTTEEE-EECC
T ss_pred cceeEeCCCCe-------------EEEeccCCCCcCCCeEEEEEEcC---CCCEEE-EeCC-CHhhCccCCCceE-EecC
Confidence 56666643221 1111000 1 1134588887665 665444 5544 4777887665432 2221
Q ss_pred Cc-----ceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEE
Q 003423 176 PE-----RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (821)
Q Consensus 176 ~~-----~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (821)
+. ...+.++.. ..++..|..|+. +-+..++..+. ......
T Consensus 183 ~~~~~~~~~~i~~i~~---d~~~~~lWigt~-~Gl~~~~~~~~-------------------------------~~~~~~ 227 (758)
T 3ott_A 183 PVHSSQSNLFVNSLLE---DTTRQCVWIGTE-GYLFQYFPSTG-------------------------------QIKQTE 227 (758)
T ss_dssp CCCTTCSSCCEEEEEE---ETTTTEEEEEEE-EEEEEEETTTT-------------------------------EEEEEE
T ss_pred CCccccccceeEEEEE---ECCCCEEEEEEC-CCCeEEcCCCC-------------------------------eEEecc
Confidence 11 122444433 233444445554 45777776511 111122
Q ss_pred EEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeece--E-EeccceeEEEEEEc-CCEEEEEeC
Q 003423 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS--V-LYGHNARVWDCCLT-DSFIITAGE 326 (821)
Q Consensus 251 ~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~--~-~~~h~~~i~~v~~~-~~~l~s~~~ 326 (821)
.+ ....|.++...++|.+.+.. .+ -+.+++..+... +.+... . ..-....|+++... ...|-.|..
T Consensus 228 ~l--~~~~i~~i~~d~~g~lWigT-~~-Gl~~~~~~~~~~------~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~ 297 (758)
T 3ott_A 228 AF--HNNSIKSLALDGNGDLLAGT-DN-GLYVYHNDTTPL------QHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTD 297 (758)
T ss_dssp EE--EEEEEEEEEECTTCCEEEEE-TT-EEEEECCTTSCC------EEECCCTTCTTSCSCSCEEEEEECTTCCEEEEES
T ss_pred CC--CCCeEEEEEEcCCCCEEEEe-CC-ceeEEecCCCcE------EEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeC
Confidence 22 23458888888888766543 44 577888765432 111000 0 00112358888776 455666666
Q ss_pred CCeEEEEcCCCceeeEeec------ccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcce
Q 003423 327 DCTCRVWGSDGKQLKMIKE------HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEI 400 (821)
Q Consensus 327 dg~i~iwd~~~~~~~~~~~------h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 400 (821)
.| +.+...... ...+.. .....|.++..+.+|.+- .|+.+| +..++........+ ..
T Consensus 298 ~G-l~~~~~~~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW-iGt~~G-l~~~~~~~~~~~~~-------------~~ 360 (758)
T 3ott_A 298 YG-ISLSRYNSA-LQFIPISQITGTGDGNQFYSLFRDSKGFYW-FGGANG-LIRFTDPAGERHDA-------------IW 360 (758)
T ss_dssp SS-EEEECCCC--CEEEEHHHHSCSCCCCBEEEEEECTTCCEE-EEETTE-EEEESCTTSSCCCC-------------EE
T ss_pred Cc-ccccccCCc-eeEEecccCCCCCCCceEEEEEEcCCCCEE-EeeCCc-ceeeccccccccee-------------EE
Confidence 66 444443221 122110 112258888888777644 445555 55555432100000 00
Q ss_pred EEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeeecc-----CCcceEEEeccCC
Q 003423 401 FSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVS-----EGMPIICMDLLSN 475 (821)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~ 475 (821)
+ ....... ......|.++.-.+++.+.+++. +-+..+ +..+..+....... ....+.++...
T Consensus 361 ~--~~~~~~~-----~l~~~~v~~i~~d~~g~lWigt~-~GL~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d-- 427 (758)
T 3ott_A 361 Y--RMGDKTY-----PLSHNRIRHIYEDKEQQLWIATD-GSINRY---DYATRQFIHYNIVDNTGTYNTNWTYYIFED-- 427 (758)
T ss_dssp E--CTTCSSS-----CCSCSCEEEEEECTTSCEEEEET-TEEEEE---ETTTTEEEEEEEECCC--CBSSSEEEEEEC--
T ss_pred e--ccCCcCC-----CCCCCceEEEEECCCCCEEEEeC-CcHhhc---CcCCCcEEEeecCCCcCCCCCceEEEEEEc--
Confidence 0 0000000 01124588888888999999885 445533 33333333322111 11234443322
Q ss_pred CCCCCCCCCcEEEEecCCccEEEEEecCCCCCCccee----EEeeccCcc-ceeeeeEEeecCCCeEEEE-ECCCCcEEE
Q 003423 476 EPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSF----TFTWSAGIE-RQLLGTYWCKSLGHRFIFT-ADPKGRLKL 549 (821)
Q Consensus 476 ~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~l~~-~~~dg~i~i 549 (821)
....+.+|+..+.+..++............ ......... ..+.. .+...++.+.+. +...| |..
T Consensus 428 -------~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~--i~~d~~g~lWi~~~t~~G-l~~ 497 (758)
T 3ott_A 428 -------TAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQ--IIPDNEGNVWVLLYNNKG-IDK 497 (758)
T ss_dssp -------TTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEE--EEECTTSCEEEEETTCSS-EEE
T ss_pred -------CCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeee--EEEcCCCCEEEEccCCCC-cEE
Confidence 235666777777788887542100000000 000001101 11221 234456677653 44444 777
Q ss_pred eeecCCCCcccccCCccceeeeeEEEec--ccCceEEEEEeecCCCEEEEEcCCCcEEEEecC
Q 003423 550 WQLCDPFSSVCYESSKTNNVFLVAEFSS--CFGARIMCLDASFEDEVLFCGDLRGNLVLFPLL 610 (821)
Q Consensus 550 wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~ 610 (821)
+|..... ....... .....+.++....+|.+.+.. ..| |..|+..
T Consensus 498 ~d~~~~~--------------~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~~~~~~ 544 (758)
T 3ott_A 498 INPRTRE--------------VTKLFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VMRINPK 544 (758)
T ss_dssp EETTTTE--------------EEEECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EEEECC-
T ss_pred EeCCCCc--------------eEEecCCCcCCCcccceEEECCCCCEEEEe-cCc-eEEEecC
Confidence 7765431 1110000 112357788777777766544 445 7778754
No 345
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=65.23 E-value=35 Score=34.11 Aligned_cols=64 Identities=11% Similarity=0.033 Sum_probs=41.9
Q ss_pred CCEEEEEECCCcEEEEEccCCceeEEEccCc-ceeEEEEeeccCCccCeEEEEE-eeCCEEEEEEcc
Q 003423 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPE-RCLLYSMKLWGDNLEALRIASG-TIYNEIIVWKVD 211 (821)
Q Consensus 147 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~s~~~~~~s~~~~~l~sg-~~dg~i~vwd~~ 211 (821)
+..+++++.||.|.-.|..+|+.+-++.... ...+. ..-.....++..++.. +.||.|..++..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~-~~~~~~~~~~~~~vv~p~~dG~l~a~~~~ 75 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIE-IQEPSRLETYETLIIEPFGDGNIYYFNAH 75 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEE-CCCSCTTTSSEEEEECCSTTTEEEEEETT
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEE-ecCCccccCCcEEEEEECCCCEEEEEECC
Confidence 3478889999999999999999988887652 22222 1110001133444443 689999999976
No 346
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=62.74 E-value=1.4e+02 Score=33.23 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=53.3
Q ss_pred CCCCEEEEEeCCC--eEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc---CCEEEEEeC--C-----CeEEEE
Q 003423 266 SCGSKLVSVSDDR--SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGE--D-----CTCRVW 333 (821)
Q Consensus 266 ~~~~~l~s~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~~~l~s~~~--d-----g~i~iw 333 (821)
.+++.++.|+.++ .+.+||..+.....-...... +....+|. ++.+. +..++.||. + ..+.+|
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~-p~~r~~~~----a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~y 573 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEF-FQNSLVSA----GLEFDPVSKQGIILGGGFMDQTTVSDKAIIF 573 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGG-GGSCCBSC----EEEEETTTTEEEEECCBCTTSSCBCCEEEEE
T ss_pred cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCC-CCccccee----EEEEeCCCCEEEEECCcCCCCCeeeCcEEEE
Confidence 3777888887654 688899887654100000000 01122232 23334 345666665 2 457888
Q ss_pred cCCCce------eeEeec--ccCCCeEEEEEecCCCEEEEEeCC--------CcEEEEEcCC
Q 003423 334 GSDGKQ------LKMIKE--HIGRGIWRCLYDSLSSLLVTAGFD--------SAIKVHQFQA 379 (821)
Q Consensus 334 d~~~~~------~~~~~~--h~~~~i~~l~~~~~~~~l~tg~~d--------g~I~iwd~~~ 379 (821)
|+.... -..+.. ...+.-.+++...++++++.||.+ ..+.+||+..
T Consensus 574 d~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 574 KYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp EECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred EccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 883322 222221 111111233334447777888753 3477777743
No 347
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=57.31 E-value=1.9e+02 Score=30.22 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=19.7
Q ss_pred ceEEEEEeecCCC-EEEEEcCCCcEE
Q 003423 581 ARIMCLDASFEDE-VLFCGDLRGNLV 605 (821)
Q Consensus 581 ~~I~~l~~s~~~~-~L~sgs~dG~i~ 605 (821)
.+++.+++.|||. ++++-+..|.++
T Consensus 405 ~R~~dv~~gpDG~~Lyv~~d~~G~i~ 430 (454)
T 1cru_A 405 NRYRDVIASPDGNVLYVLTDTAGNVQ 430 (454)
T ss_dssp SCEEEEEECTTSSCEEEEECSSCCEE
T ss_pred CCceeEEECCCCCEEEEEECCCCCCc
Confidence 5789999999997 777766667654
No 348
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=51.08 E-value=29 Score=34.69 Aligned_cols=31 Identities=13% Similarity=0.087 Sum_probs=27.9
Q ss_pred CCeEEEeeecccEEEEECccccEEEEEeeCC
Q 003423 704 SCNYAAGFASTDFIIWNLITEAKVVQIPCGG 734 (821)
Q Consensus 704 ~~~l~~g~~~~~~~vW~~~~~~~l~~i~cgg 734 (821)
++.+++|+.++.++.-|..+++++++..-|+
T Consensus 111 ~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~ 141 (339)
T 2be1_A 111 DEKVYTGSMRTIMYTINMLNGEIISAFGPGS 141 (339)
T ss_dssp CEEEEECEEEEEEEEEETTTCCEEEEESTTC
T ss_pred CCEEEEEecCCEEEEEECCCCcEEEEEecCC
Confidence 4568899999999999999999999998775
No 349
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=50.41 E-value=2.4e+02 Score=29.45 Aligned_cols=29 Identities=7% Similarity=-0.038 Sum_probs=22.3
Q ss_pred cEEEEEEeecCCCCC-EEEEEECCCcEEEEEcc
Q 003423 134 WVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDIS 165 (821)
Q Consensus 134 ~I~~~~~~~~~~~~~-~l~t~~~d~~i~iwd~~ 165 (821)
.-+.|+|.| ++. .|+++...|.|++++..
T Consensus 15 ~P~~~a~~p---dG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSG---DGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCS---SSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECC---CCCeEEEEEeCCceEEEEeCC
Confidence 357899999 885 45556788999999754
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=48.50 E-value=1.9e+02 Score=27.72 Aligned_cols=102 Identities=11% Similarity=0.038 Sum_probs=54.3
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEcC--
Q 003423 258 SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-- 335 (821)
Q Consensus 258 ~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~-- 335 (821)
.|..|+...+...++ . ||.|..|-...... .. ....-...|..++-.....+.- .||.+..|-.
T Consensus 142 ~i~~i~~G~~~~~~l--~-~G~v~~wG~n~~gq-----lg-----~p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~ 207 (282)
T 3qhy_B 142 GVTALDGGVYTALAV--K-NGGVIAWGDNYFGQ-----TT-----VPAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNR 207 (282)
T ss_dssp SEEEEEECSSEEEEE--E-TTEEEEEECCTTST-----TS-----CCGGGGSSEEEEEECSSEEEEE-ETTEEEEEECCT
T ss_pred CeEEEEcccCEEEEE--E-CCEEEEecCCCCCC-----CC-----CceecCCCeEEEEecCCEEEEE-ECCeEEEEECCC
Confidence 456665543322222 3 68888886554322 10 0011134577777765555555 7999999976
Q ss_pred CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 336 DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 336 ~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
.++.-..... .. .|..++.......+++ ||.|..|-..
T Consensus 208 ~gqlg~p~~~-~~-~v~~i~~G~~h~~al~---~g~v~~wG~n 245 (282)
T 3qhy_B 208 YKQTTVPTEA-LS-GVSAIASGEWYSLALK---NGKVIAWGSS 245 (282)
T ss_dssp TSTTCCCGGG-GS-SCCEEEECSSCEEEEE---TTEEEEESTT
T ss_pred CCCCCCCccc-CC-CceEEEcCCCEEEEEE---CCEEEEecCC
Confidence 2322111111 12 4777776554433333 8999999653
No 351
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=48.30 E-value=1.8e+02 Score=31.26 Aligned_cols=117 Identities=9% Similarity=0.042 Sum_probs=64.2
Q ss_pred ccEEeEEeccccCCCCCCccceeeEEEEEc--CCeEEEEEEeecCC--CCCCCCCccccccceeeeccCCCCcEEEEEEe
Q 003423 66 IRLHGISCNFINCTEGSVSTRVTFEVALFG--EKRVKLFELNFELS--PNSQYQPETCVNLSLVQSLPRLSHWVFDVCFL 141 (821)
Q Consensus 66 ~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g--~~~v~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~ 141 (821)
...|++.++|++ + .+++.| +.++.++++..-.. ......+ +-......+ -.-..+-.+|.
T Consensus 323 ksPHGv~vsPDG-------k----yi~v~GKLsptvtV~d~~k~~~~~~~k~~~~----~~~~~ae~e-~GlGPlHt~Fd 386 (638)
T 3sbq_A 323 KNPHGCNTSSDG-------K----YFIAAGKLSPTCSMIAIDKLPDLFAGKLADP----RDVIVGEPE-LGLGPLHTTFD 386 (638)
T ss_dssp SSCCCEEECTTS-------C----EEEEECTTSSBEEEEEGGGHHHHHTTCCSCG----GGGEEECCB-CCSCEEEEEEC
T ss_pred CCCcceeeCCCC-------C----EEEEcCCCCCeEEEEEeehhhhhhhccccCc----ccceEeecc-CCCcccEEEEC
Confidence 357777777553 3 666665 68999999873110 0000001 011122222 22346778898
Q ss_pred ecCCCCCEEEEEECCCcEEEEEccCC----------ceeEEEccCcceeEEEEee-ccCCccCeEEEEEee
Q 003423 142 KVCNGNRSLAIGCSDNSIRVWDISNS----------SIILEVHSPERCLLYSMKL-WGDNLEALRIASGTI 201 (821)
Q Consensus 142 ~~~~~~~~l~t~~~d~~i~iwd~~~~----------~~~~~~~~~~~~~~~s~~~-~~~s~~~~~l~sg~~ 201 (821)
+ +|....|-..|..|..|++... ..+.++..+-...-..... -...+++++|++...
T Consensus 387 ~---~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 387 G---RGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp S---SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred C---CCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence 8 8855555568999999999753 3455554443322111110 112468888888754
No 352
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=45.88 E-value=2.4e+02 Score=28.08 Aligned_cols=107 Identities=11% Similarity=0.099 Sum_probs=54.9
Q ss_pred CcEEEEEEcCCCC-EEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC-----CEEEEEeC----
Q 003423 257 GSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-----SFIITAGE---- 326 (821)
Q Consensus 257 ~~I~~l~~s~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~-----~~l~s~~~---- 326 (821)
.....|+|.|+|+ ++++ ...|.|++++... .... .+..+. ............+++++ ..|+.+..
T Consensus 18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~g-~~~~--~~~~~~-~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~ 92 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLIT-LRGGELRHWQAGK-GLSA--PLSGVP-DVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGD 92 (353)
T ss_dssp SSEEEEEECSTTCCEEEE-ETTTEEEEEETTT-EECC--CCBSCC-CCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECS
T ss_pred CCcEEEEEcCCCCEEEEE-eCCceEEEEeCCC-ceee--EecCCc-ccccCCCCCceeEEECCCCCCCCEEEEEEeCCCC
Confidence 3568999999998 5554 5679999988532 2100 000000 01112234567888884 44544432
Q ss_pred ----CCeEEEEcCCCc-----eeeE-eecc-----cCCCeEEEEEecCCCEEEEEeC
Q 003423 327 ----DCTCRVWGSDGK-----QLKM-IKEH-----IGRGIWRCLYDSLSSLLVTAGF 368 (821)
Q Consensus 327 ----dg~i~iwd~~~~-----~~~~-~~~h-----~~~~i~~l~~~~~~~~l~tg~~ 368 (821)
...|..++++.. ..+. +... ....-..|+|.|+|.+.++-+.
T Consensus 93 ~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd 149 (353)
T 2g8s_A 93 DGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE 149 (353)
T ss_dssp SSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred CCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence 224555555321 1111 1110 0011357999999976666544
No 353
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=44.38 E-value=2.2e+02 Score=30.57 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=31.7
Q ss_pred cceEEeec--CCeEEEEECCCCeeeeEEEeeccccEEeEEec
Q 003423 35 LPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (821)
Q Consensus 35 ~~~l~~g~--~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~ 74 (821)
++||+... .+.|-..++..-+.-..++.+....+|++.+.
T Consensus 142 GrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~ 183 (638)
T 3sbq_A 142 GKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQ 183 (638)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEEC
T ss_pred eEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCccccccc
Confidence 67888766 58888888888888777777777778888875
No 354
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=43.93 E-value=4.4e+02 Score=30.60 Aligned_cols=30 Identities=10% Similarity=0.032 Sum_probs=23.0
Q ss_pred eEEEEEEecCCCceEEEEecCCCeEEEEEeecC
Q 003423 640 VSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKD 672 (821)
Q Consensus 640 Vt~i~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~ 672 (821)
+.+++.. ++..+++|.++|.++|+|++...
T Consensus 238 ~~~~~~~---~~~~~lftl~~D~~LRiWsl~t~ 267 (950)
T 4gq2_M 238 IISMIFL---STYNVLVMLSLDYKLKVLDLSTN 267 (950)
T ss_dssp EEEEEEE---TTTTEEEEEETTCEEEEEETTTT
T ss_pred EEEEeec---CCCcEEEEEECCCEEEEEECCCC
Confidence 3444444 56678999999999999999764
No 355
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=37.64 E-value=3.2e+02 Score=27.18 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=25.7
Q ss_pred CcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce
Q 003423 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (821)
Q Consensus 133 ~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~ 169 (821)
.....++|.| +|.++++--..|.|++++..++..
T Consensus 32 ~~P~~ia~~p---dG~llVter~~G~I~~v~~~~g~~ 65 (347)
T 3das_A 32 NSPWGLAPLP---GGDLLVSSRDEATITRVDAKTGRK 65 (347)
T ss_dssp SSEEEEEECT---TSCEEEEETTTCEEEEECTTTCCE
T ss_pred CCceEEEEcC---CCcEEEEEecCCEEEEEECCCCcE
Confidence 4578999999 998776654489999988665543
No 356
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.32 E-value=68 Score=37.50 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=32.0
Q ss_pred CcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEE
Q 003423 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (821)
Q Consensus 133 ~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~ 173 (821)
..+.+++..+ +..+++|-+.|+++|+|++.+++++.+.
T Consensus 236 ~~~~~~~~~~---~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLS---TYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEET---TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecC---CCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 3577777777 8889999999999999999999887654
No 357
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=27.71 E-value=4.7e+02 Score=26.14 Aligned_cols=66 Identities=9% Similarity=-0.077 Sum_probs=37.5
Q ss_pred eeEEEEEEc----CCEEEEEeCCCeEEEEcCCCceeeEeec------------------ccCCCeEEEEEecC-CCEEEE
Q 003423 309 ARVWDCCLT----DSFIITAGEDCTCRVWGSDGKQLKMIKE------------------HIGRGIWRCLYDSL-SSLLVT 365 (821)
Q Consensus 309 ~~i~~v~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------h~~~~i~~l~~~~~-~~~l~t 365 (821)
..|+++++. ++.++.++..+.|...+-.|+.-..+.. .....+.+|.++|. ...|+.
T Consensus 115 ~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v 194 (394)
T 3b7f_A 115 DHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI 194 (394)
T ss_dssp CEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred cceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence 368888886 5678877777766655444443333221 01124788999874 344555
Q ss_pred EeCCCcEEE
Q 003423 366 AGFDSAIKV 374 (821)
Q Consensus 366 g~~dg~I~i 374 (821)
+..++.|..
T Consensus 195 g~~~ggl~~ 203 (394)
T 3b7f_A 195 GMSSGGVFE 203 (394)
T ss_dssp EEETBEEEE
T ss_pred EECCCCEEE
Confidence 554444433
No 358
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=25.39 E-value=4.4e+02 Score=25.02 Aligned_cols=169 Identities=11% Similarity=0.051 Sum_probs=90.1
Q ss_pred CeEEEEEec-CCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEE-e
Q 003423 350 GIWRCLYDS-LSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLH-L 427 (821)
Q Consensus 350 ~i~~l~~~~-~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~-f 427 (821)
.|..+.... +...++..+.+|.++-..+..-. +.-.+ ...+. +.. ++.+..+. .
T Consensus 69 ~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~~~G------------~~~i~----------lke-gD~l~~~~~~ 124 (276)
T 3no0_A 69 KIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YKAQG------------MPIIK----------LTE-GDEVVSIASS 124 (276)
T ss_dssp CEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TCSTT------------EECSC----------CCT-TCCEEEEEEC
T ss_pred EEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hhcCC------------eEEEe----------cCC-CCEEEEEEEe
Confidence 466654421 46789999999999998874321 11000 00000 111 12233333 3
Q ss_pred ecCCeEEEEecCCcEEEEEecCCCcc----eeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecC
Q 003423 428 TSEDTLYIATNHGYLYHTKLCDMDSV----NWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVG 503 (821)
Q Consensus 428 ~~~~~~l~~~~~g~~~~~~i~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~ 503 (821)
..+..+++.|+.|+.+.+...+.+.. .-...........+..+.... .+..+++.+..|.++...+..
T Consensus 125 ~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~--------~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 125 VDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWN--------GEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp CSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEES--------SCSEEEEEETTSCEEEEEGGG
T ss_pred CCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeC--------CCCEEEEEeCCCcEEEeEHHH
Confidence 34557899999999998877664331 112233344445555544322 246788888999998888765
Q ss_pred CCCCCcce-eEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEE--eeecC
Q 003423 504 DVHTPQLS-FTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKL--WQLCD 554 (821)
Q Consensus 504 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i--wd~~~ 554 (821)
-....... -.... .....+..+..+ . +...++..+.+|.+.. ++...
T Consensus 197 ~~~~~R~gkGv~~i--~~~~~lv~~~~~-~-~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 197 IPKTNRGVKGTEVS--GTKDTLVDLIPI-K-EEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp SCCCCTTCCCEECC--CSSSCEEEEEEE-S-SEEEEEEEETTSCEEEEEEEGGG
T ss_pred cccCCCCCcceEEE--cCCCcEEEEEEe-C-CCCEEEEEcCCCeEEEeeeCHHH
Confidence 43322111 11111 223334433322 2 3345666677787777 77654
No 359
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=23.98 E-value=5.6e+02 Score=25.68 Aligned_cols=120 Identities=12% Similarity=0.075 Sum_probs=64.9
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEecccCccc-CCCCceeeeceEEec-cceeEEEEEEcCCEEEEEeCCCeEEEEc
Q 003423 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK-DSDSIEEVGSSVLYG-HNARVWDCCLTDSFIITAGEDCTCRVWG 334 (821)
Q Consensus 257 ~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~-h~~~i~~v~~~~~~l~s~~~dg~i~iwd 334 (821)
..|..++........+.-..||.|..|=....... .........+..+.. ....|..++......+.-..||.+..|-
T Consensus 211 ~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG 290 (389)
T 3kci_A 211 HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWG 290 (389)
T ss_dssp SCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEe
Confidence 35677776543345566678899999965432210 000000011112211 1224667776667777778999999997
Q ss_pred CC--Cc----------eeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 335 SD--GK----------QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 335 ~~--~~----------~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
.. ++ ....+....+..|..++.. ....+.-..||.|..|=.+
T Consensus 291 ~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 291 KGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEEECC
T ss_pred CCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEeeCC
Confidence 52 11 1112222222246666543 3445556789999999764
No 360
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=22.72 E-value=5.9e+02 Score=25.50 Aligned_cols=69 Identities=9% Similarity=-0.029 Sum_probs=44.4
Q ss_pred eEEEEEEcCCEEEEEeCCCeEEEEcCC--Cc----------eeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 310 RVWDCCLTDSFIITAGEDCTCRVWGSD--GK----------QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 310 ~i~~v~~~~~~l~s~~~dg~i~iwd~~--~~----------~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
.|..++-.....+.-..||.+..|-.. |+ ....+.......+..++++.-....+.-..||.|..|-.
T Consensus 54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~ 133 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGE 133 (389)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEEC
T ss_pred ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeC
Confidence 455666666777778899999999651 11 111122222223556677666677777788999999976
Q ss_pred C
Q 003423 378 Q 378 (821)
Q Consensus 378 ~ 378 (821)
.
T Consensus 134 n 134 (389)
T 3kci_A 134 A 134 (389)
T ss_dssp C
T ss_pred C
Confidence 3
No 361
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=21.46 E-value=85 Score=37.63 Aligned_cols=82 Identities=11% Similarity=0.035 Sum_probs=0.0
Q ss_pred cCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEe--------cCCCcEEEEE
Q 003423 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV--------GHEGSIFRIE 263 (821)
Q Consensus 192 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~h~~~I~~l~ 263 (821)
+...++.+-.||-+.-.+.. ..+.......+.+..+......-+. +-...+.+++
T Consensus 182 s~~~lvVsL~DGgLLrL~r~-----------------~~d~~~~~~~f~~~s~l~sL~~l~~~~~~~~~~~~~~~~vs~~ 244 (1139)
T 4fhn_B 182 STSEICVSFFNGGLTKIILN-----------------PKDASHYEQHIDDSSYLFSLKKYLSLQAFKADYRSPNTIISMI 244 (1139)
T ss_dssp CSSEEEEEETTSCEEEEEEE-----------------TTEEEEEEEC---------------------CCCCTTCBSCCE
T ss_pred cCCcEEEEECCCCEEEEEec-----------------CCCCCCceeeecCCcHHhhhhhhcccccCCccCCCcceeEEee
Q ss_pred EcCCCCEEEEEeCCCeEEEEecccCcc
Q 003423 264 WSSCGSKLVSVSDDRSARIWEVRAEYW 290 (821)
Q Consensus 264 ~s~~~~~l~s~s~Dg~i~iwd~~~~~~ 290 (821)
..++..++++-+.|+++|+|++.++.+
T Consensus 245 ~~~~~~~lftL~~D~~LRiWsl~t~~~ 271 (1139)
T 4fhn_B 245 FLSTYNVLVMLSLDYKLKVLDLSTNQC 271 (1139)
T ss_dssp EETTTTEEEEEBTTCEEEEEETTTTEE
T ss_pred ccCCccEEEEEeCCCEEEEEECCCCCe
No 362
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=21.21 E-value=1.4e+02 Score=33.01 Aligned_cols=39 Identities=15% Similarity=0.348 Sum_probs=0.0
Q ss_pred CCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEE
Q 003423 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (821)
Q Consensus 130 ~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~ 173 (821)
.....|.++.+ +..+|+|-+.|.++|+|++.+++++...
T Consensus 219 ~~~~~Is~~~~-----~~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 219 DYDSVISCKLF-----HERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp CCCCEEEEEEE-----TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred CcCceEEEecc-----CCcEEEEEEcCCeEEEEEcCCCceEEee
Done!