Query 003425
Match_columns 821
No_of_seqs 1085 out of 5442
Neff 9.9
Searched_HMMs 29240
Date Tue Mar 26 00:46:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003425.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003425hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 7.7E-40 2.6E-44 352.2 9.1 341 66-514 3-348 (355)
2 2xai_A ASB-9, ankyrin repeat a 100.0 7.6E-36 2.6E-40 307.8 24.8 207 538-745 2-209 (261)
3 1oy3_D Transcription factor in 100.0 2.6E-36 9E-41 315.4 20.9 212 533-744 3-267 (282)
4 3d9h_A CDNA FLJ77766, highly s 100.0 1.9E-35 6.6E-40 308.8 24.4 211 532-743 52-263 (285)
5 1yyh_A HN1;, notch 1, ankyrin 100.0 9.2E-36 3.1E-40 305.8 20.0 209 532-740 3-228 (253)
6 3b7b_A Euchromatic histone-lys 100.0 4E-35 1.4E-39 298.0 24.0 215 531-745 3-220 (237)
7 1k1a_A B-cell lymphoma 3-encod 100.0 8.5E-35 2.9E-39 296.3 25.2 211 533-743 3-224 (241)
8 3utm_A Tankyrase-1; tankyrase, 100.0 8.9E-35 3E-39 314.1 25.8 239 502-741 22-319 (351)
9 4b93_B Ankyrin repeat domain-c 100.0 3.8E-35 1.3E-39 302.8 19.9 210 534-743 6-226 (269)
10 3aji_A 26S proteasome non-ATPa 100.0 6.6E-35 2.2E-39 295.1 21.3 219 508-727 10-230 (231)
11 2rfa_A Transient receptor pote 100.0 1.1E-34 3.9E-39 293.6 21.4 195 538-732 2-227 (232)
12 2f8y_A Notch homolog 1, transl 100.0 6E-34 2E-38 286.4 25.0 196 534-729 20-218 (223)
13 2dzn_A Probable 26S proteasome 100.0 5.3E-34 1.8E-38 287.8 23.9 206 539-744 2-217 (228)
14 1yyh_A HN1;, notch 1, ankyrin 100.0 3.8E-34 1.3E-38 293.7 23.0 194 534-727 52-248 (253)
15 3aji_A 26S proteasome non-ATPa 100.0 9.9E-34 3.4E-38 286.5 22.4 205 538-742 5-212 (231)
16 1wdy_A 2-5A-dependent ribonucl 100.0 3.2E-33 1.1E-37 292.3 27.0 237 505-742 6-260 (285)
17 1ikn_D Protein (I-kappa-B-alph 100.0 4.7E-35 1.6E-39 297.2 12.4 205 534-738 3-222 (236)
18 4b93_B Ankyrin repeat domain-c 100.0 2.1E-34 7.1E-39 297.2 16.4 220 508-727 15-244 (269)
19 1k1a_A B-cell lymphoma 3-encod 100.0 3.4E-34 1.2E-38 291.9 17.4 224 503-726 8-240 (241)
20 3hra_A Ankyrin repeat family p 100.0 4.3E-33 1.5E-37 275.2 22.9 189 537-725 3-201 (201)
21 3kea_A K1L; tropism, ANK repea 100.0 4.4E-34 1.5E-38 298.3 16.6 198 532-732 24-225 (285)
22 1wdy_A 2-5A-dependent ribonucl 100.0 9.5E-33 3.3E-37 288.7 26.5 226 505-732 40-283 (285)
23 2xai_A ASB-9, ankyrin repeat a 100.0 2E-33 7E-38 289.6 20.1 215 508-728 7-223 (261)
24 1s70_B 130 kDa myosin-binding 100.0 1.9E-33 6.5E-38 296.5 20.2 209 534-742 35-272 (299)
25 3ljn_A Hypothetical protein; a 100.0 2.4E-33 8.1E-38 304.6 21.1 223 504-730 20-272 (364)
26 2etb_A Transient receptor pote 100.0 4.7E-34 1.6E-38 293.7 13.8 193 539-731 2-250 (256)
27 4gpm_A Engineered protein OR26 100.0 9.2E-33 3.2E-37 262.6 21.4 159 540-729 5-163 (169)
28 2fo1_E LIN-12 protein; beta-ba 100.0 2.7E-33 9.2E-38 304.4 19.4 227 502-728 123-372 (373)
29 1n11_A Ankyrin; clathrin, BAND 100.0 1.4E-32 4.7E-37 306.5 24.3 233 508-742 150-384 (437)
30 3d9h_A CDNA FLJ77766, highly s 100.0 1.1E-32 3.9E-37 287.7 21.9 219 505-729 60-281 (285)
31 2pnn_A Transient receptor pote 100.0 1.6E-33 5.5E-38 292.7 14.5 205 532-736 6-268 (273)
32 3b7b_A Euchromatic histone-lys 100.0 1.8E-32 6.1E-37 278.4 20.7 217 505-723 12-231 (237)
33 1n11_A Ankyrin; clathrin, BAND 100.0 3E-32 1E-36 303.7 23.9 237 504-742 14-252 (437)
34 3ljn_A Hypothetical protein; a 100.0 1.2E-32 3.9E-37 299.1 19.5 213 528-742 9-251 (364)
35 2fo1_E LIN-12 protein; beta-ba 100.0 5E-33 1.7E-37 302.3 16.1 211 532-742 117-353 (373)
36 1oy3_D Transcription factor in 100.0 1.1E-32 3.8E-37 287.8 18.0 211 504-714 9-270 (282)
37 3eu9_A Huntingtin-interacting 100.0 7E-32 2.4E-36 274.4 22.6 193 535-727 38-235 (240)
38 3eu9_A Huntingtin-interacting 100.0 5.6E-32 1.9E-36 275.1 21.9 212 532-743 2-218 (240)
39 2dzn_A Probable 26S proteasome 100.0 5.1E-32 1.8E-36 273.2 19.1 214 507-724 5-227 (228)
40 4g8k_A 2-5A-dependent ribonucl 100.0 2.6E-31 8.8E-36 285.2 25.1 224 505-730 26-301 (337)
41 3kea_A K1L; tropism, ANK repea 100.0 2.4E-32 8.3E-37 285.1 14.5 219 503-732 30-251 (285)
42 3utm_A Tankyrase-1; tankyrase, 100.0 4.2E-31 1.5E-35 285.2 24.6 211 532-742 17-287 (351)
43 4g8k_A 2-5A-dependent ribonucl 100.0 4.8E-31 1.7E-35 283.1 24.6 209 534-742 20-280 (337)
44 2f8y_A Notch homolog 1, transl 100.0 9.7E-32 3.3E-36 270.2 17.8 193 549-741 1-197 (223)
45 3jxi_A Vanilloid receptor-rela 100.0 2E-32 6.7E-37 282.4 12.5 194 538-731 4-254 (260)
46 1s70_B 130 kDa myosin-binding 100.0 1.5E-31 5.1E-36 282.0 16.3 216 505-722 41-285 (299)
47 2ptm_A Hyperpolarization-activ 100.0 6.8E-30 2.3E-34 251.1 21.7 190 321-514 4-194 (198)
48 4hbd_A KN motif and ankyrin re 100.0 9.7E-31 3.3E-35 271.4 14.0 190 536-725 73-273 (276)
49 3ukn_A Novel protein similar t 100.0 8.1E-30 2.8E-34 253.5 18.7 193 316-514 2-199 (212)
50 2rfm_A Putative ankyrin repeat 100.0 1.3E-29 4.3E-34 248.2 17.2 160 566-725 29-190 (192)
51 3v31_A Ankyrin repeat family A 100.0 3.5E-29 1.2E-33 239.0 18.8 161 538-729 2-162 (167)
52 3bpz_A Potassium/sodium hyperp 100.0 4.2E-29 1.4E-33 246.2 19.9 188 321-513 5-193 (202)
53 2y1l_E Darpin-8.4; hydrolase-i 100.0 7.3E-29 2.5E-33 237.2 21.0 161 534-725 9-169 (169)
54 3v30_A DNA-binding protein rfx 100.0 2E-29 7E-34 241.9 16.1 168 539-737 2-170 (172)
55 1ihb_A P18-INK4C(INK6), cyclin 100.0 3.9E-29 1.3E-33 237.4 17.7 158 538-727 4-162 (162)
56 1ikn_D Protein (I-kappa-B-alph 100.0 4E-30 1.4E-34 260.8 10.1 208 506-713 10-230 (236)
57 3v30_A DNA-binding protein rfx 100.0 1.1E-28 3.6E-33 236.9 17.1 140 572-742 2-142 (172)
58 2rfm_A Putative ankyrin repeat 100.0 5.8E-29 2E-33 243.5 15.1 166 527-692 23-190 (192)
59 1sw6_A Regulatory protein SWI6 100.0 2.8E-29 9.5E-34 267.4 13.6 195 541-743 99-324 (327)
60 2rfa_A Transient receptor pote 100.0 3.2E-28 1.1E-32 246.1 20.0 170 571-740 2-202 (232)
61 1sw6_A Regulatory protein SWI6 100.0 2.1E-29 7.1E-34 268.4 11.4 176 530-713 121-327 (327)
62 1awc_B Protein (GA binding pro 100.0 6.3E-28 2.1E-32 226.6 19.8 151 539-721 2-152 (153)
63 3twr_A Tankyrase-2; ankyrin re 100.0 3.2E-28 1.1E-32 231.8 17.4 160 535-726 4-164 (165)
64 3f6q_A Integrin-linked protein 100.0 3.6E-28 1.2E-32 234.9 17.1 168 536-734 2-170 (179)
65 3hra_A Ankyrin repeat family p 100.0 1.1E-27 3.8E-32 236.2 19.6 185 507-692 8-201 (201)
66 2vge_A RELA-associated inhibit 100.0 6.5E-31 2.2E-35 264.2 -4.1 186 533-721 15-207 (229)
67 3f6q_A Integrin-linked protein 100.0 7.8E-28 2.7E-32 232.5 17.3 142 570-742 3-145 (179)
68 2pnn_A Transient receptor pote 99.9 3.3E-28 1.1E-32 252.5 12.8 206 502-707 11-272 (273)
69 2etb_A Transient receptor pote 99.9 5.8E-28 2E-32 248.1 14.3 172 571-742 1-228 (256)
70 1bd8_A P19INK4D CDK4/6 inhibit 99.9 4.6E-27 1.6E-31 221.5 19.0 153 539-724 2-155 (156)
71 4gpm_A Engineered protein OR26 99.9 7.2E-27 2.5E-31 221.9 17.2 161 503-697 4-164 (169)
72 1ycs_B 53BP2, P53BP2; ankyrin 99.9 3.8E-28 1.3E-32 246.4 6.8 178 536-714 2-193 (239)
73 3jxi_A Vanilloid receptor-rela 99.9 2.6E-27 9E-32 243.9 11.5 194 504-697 5-253 (260)
74 4hbd_A KN motif and ankyrin re 99.9 8.6E-27 2.9E-31 241.7 15.3 165 528-692 100-273 (276)
75 1orq_C Potassium channel; volt 99.9 1.6E-26 5.6E-31 230.4 16.2 207 75-320 9-220 (223)
76 3t8k_A Uncharacterized protein 99.9 5.2E-27 1.8E-31 226.8 10.7 167 538-731 5-183 (186)
77 1ycs_B 53BP2, P53BP2; ankyrin 99.9 5.6E-27 1.9E-31 237.8 9.4 165 569-734 2-171 (239)
78 2vge_A RELA-associated inhibit 99.9 6.4E-27 2.2E-31 235.0 5.5 187 555-744 1-197 (229)
79 1d9s_A Cyclin-dependent kinase 99.9 2.6E-25 9E-30 203.9 14.1 134 562-727 2-136 (136)
80 1d9s_A Cyclin-dependent kinase 99.9 2.4E-25 8.1E-30 204.2 13.2 132 531-694 4-136 (136)
81 1bi7_B P16INK4A, MTS1, multipl 99.9 1.3E-25 4.5E-30 211.3 10.4 139 568-707 8-149 (156)
82 2r9r_B Paddle chimera voltage 99.9 6.3E-26 2.1E-30 251.5 9.1 287 54-384 161-488 (514)
83 2aja_A Ankyrin repeat family p 99.9 2.4E-26 8.2E-31 246.7 -1.0 186 535-728 88-345 (376)
84 1bi7_B P16INK4A, MTS1, multipl 99.9 7.2E-25 2.5E-29 206.3 9.2 143 533-676 6-151 (156)
85 1ihb_A P18-INK4C(INK6), cyclin 99.9 1.4E-23 4.7E-28 198.9 15.9 156 506-694 7-162 (162)
86 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2.9E-23 1E-27 187.4 16.8 126 571-727 1-126 (126)
87 2jab_A H10-2-G3; HER2, darpin, 99.9 1.5E-23 5E-28 192.3 14.7 64 661-724 72-135 (136)
88 3v31_A Ankyrin repeat family A 99.9 2.6E-23 8.9E-28 198.1 16.8 140 571-741 2-141 (167)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 3.3E-23 1.1E-27 189.9 16.3 128 534-692 9-136 (136)
90 3c5r_A BARD-1, BRCA1-associate 99.9 3.8E-24 1.3E-28 196.5 9.9 134 562-727 1-134 (137)
91 2y1l_E Darpin-8.4; hydrolase-i 99.9 6.5E-23 2.2E-27 195.7 16.2 142 569-741 11-152 (169)
92 1n0r_A 4ANK, 4 ankyrin repeats 99.9 7.4E-23 2.5E-27 184.7 15.2 126 538-694 1-126 (126)
93 2aja_A Ankyrin repeat family p 99.9 2E-25 6.8E-30 239.5 -2.2 179 538-731 64-254 (376)
94 3deo_A Signal recognition part 99.9 8.6E-23 2.9E-27 197.6 14.4 143 533-724 38-181 (183)
95 3twr_A Tankyrase-2; ankyrin re 99.9 1.4E-22 4.9E-27 192.5 15.6 143 569-742 5-148 (165)
96 3ui2_A Signal recognition part 99.9 7.2E-23 2.5E-27 207.9 14.0 146 534-728 40-186 (244)
97 1awc_B Protein (GA binding pro 99.9 1.1E-22 3.8E-27 190.6 14.0 138 573-742 3-140 (153)
98 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.4E-22 8.4E-27 189.0 16.2 151 507-691 5-155 (156)
99 3t8k_A Uncharacterized protein 99.9 6E-23 2.1E-27 198.3 9.8 137 537-699 36-184 (186)
100 2b0o_E UPLC1; arfgap, structur 99.9 2.4E-22 8.3E-27 210.1 12.7 137 573-715 152-299 (301)
101 3ehr_A Osteoclast-stimulating 99.9 1.8E-22 6.2E-27 202.1 9.7 141 569-739 70-210 (222)
102 3aaa_C Myotrophin, protein V-1 99.9 7.2E-22 2.5E-26 177.4 11.1 110 570-710 5-114 (123)
103 3c5r_A BARD-1, BRCA1-associate 99.9 3.5E-22 1.2E-26 183.3 7.8 129 534-693 5-133 (137)
104 3ehr_A Osteoclast-stimulating 99.9 4.1E-22 1.4E-26 199.6 8.9 138 534-702 68-206 (222)
105 3aaa_C Myotrophin, protein V-1 99.9 2E-21 6.7E-26 174.5 11.5 117 536-683 4-120 (123)
106 3deo_A Signal recognition part 99.8 4.5E-23 1.5E-27 199.6 -1.0 127 569-727 41-168 (183)
107 1dcq_A PYK2-associated protein 99.8 1.2E-20 4.1E-25 195.0 14.5 190 536-729 63-265 (278)
108 3jue_A Arfgap with coiled-coil 99.8 2.7E-20 9.4E-25 198.8 15.7 145 538-713 198-348 (368)
109 3lvq_E ARF-GAP with SH3 domain 99.8 2.1E-20 7.1E-25 210.5 15.2 127 541-698 134-269 (497)
110 1n0q_A 3ANK, 3 ankyrin repeats 99.8 5.3E-20 1.8E-24 155.9 12.3 93 635-727 1-93 (93)
111 1dcq_A PYK2-associated protein 99.8 1.4E-19 4.7E-24 187.0 17.7 131 534-695 125-264 (278)
112 2b0o_E UPLC1; arfgap, structur 99.8 6.7E-20 2.3E-24 191.6 15.4 126 602-727 148-284 (301)
113 4f8a_A Potassium voltage-gated 99.8 7.1E-20 2.4E-24 172.8 13.0 143 365-512 5-149 (160)
114 1n0q_A 3ANK, 3 ankyrin repeats 99.8 7.9E-20 2.7E-24 154.9 11.7 93 538-630 1-93 (93)
115 3jue_A Arfgap with coiled-coil 99.8 2.3E-19 8E-24 191.5 14.6 126 572-728 199-327 (368)
116 3lvq_E ARF-GAP with SH3 domain 99.8 2.5E-19 8.6E-24 201.6 14.3 134 574-735 134-273 (497)
117 2a9h_A Voltage-gated potassium 99.8 4.4E-19 1.5E-23 162.0 12.8 126 151-321 15-140 (155)
118 3ui2_A Signal recognition part 99.8 3.9E-19 1.3E-23 180.4 11.3 142 538-714 14-156 (244)
119 2l6b_A NR1C; ankyrin, consensu 99.8 7.2E-19 2.5E-23 155.6 8.6 106 569-705 6-111 (115)
120 3mdp_A Cyclic nucleotide-bindi 99.8 2.7E-18 9.3E-23 158.3 12.4 128 386-513 5-135 (142)
121 2l6b_A NR1C; ankyrin, consensu 99.8 1.3E-18 4.3E-23 154.0 8.8 106 634-739 7-112 (115)
122 2pqq_A Putative transcriptiona 99.7 1.1E-17 3.6E-22 155.7 13.7 128 386-513 4-131 (149)
123 3gyd_A CNMP-BD protein, cyclic 99.7 5.4E-18 1.8E-22 164.1 12.1 149 365-513 13-165 (187)
124 3idb_B CAMP-dependent protein 99.7 3.8E-18 1.3E-22 161.0 10.2 127 382-509 33-159 (161)
125 3ocp_A PRKG1 protein; serine/t 99.7 3.8E-18 1.3E-22 156.7 9.1 132 371-507 7-138 (139)
126 2z69_A DNR protein; beta barre 99.7 2.4E-17 8.4E-22 154.2 12.6 128 386-513 11-139 (154)
127 3dn7_A Cyclic nucleotide bindi 99.7 5.9E-17 2E-21 158.1 12.3 129 385-513 5-134 (194)
128 2zgd_A 3 repeat synthetic anky 99.7 6.7E-17 2.3E-21 141.4 11.3 95 530-624 15-109 (110)
129 2ih3_C Voltage-gated potassium 99.7 7.5E-17 2.5E-21 141.8 11.3 56 265-320 61-116 (122)
130 4ev0_A Transcription regulator 99.7 1.4E-16 4.9E-21 158.3 12.9 126 389-514 1-126 (216)
131 2zgd_A 3 repeat synthetic anky 99.7 1.3E-16 4.3E-21 139.6 11.0 87 635-721 23-109 (110)
132 1wgp_A Probable cyclic nucleot 99.7 1.2E-16 4E-21 146.2 10.1 119 386-505 5-134 (137)
133 3rvy_A ION transport protein; 99.7 4.5E-18 1.6E-22 176.0 0.3 213 57-320 19-241 (285)
134 3e97_A Transcriptional regulat 99.7 1.8E-16 6.1E-21 159.4 11.8 129 386-514 5-133 (231)
135 3fx3_A Cyclic nucleotide-bindi 99.7 1.7E-16 5.7E-21 160.3 11.4 130 385-514 9-138 (237)
136 4h33_A LMO2059 protein; bilaye 99.7 2E-16 6.7E-21 142.1 10.3 92 265-356 43-135 (137)
137 3dv8_A Transcriptional regulat 99.7 4.5E-16 1.5E-20 155.2 14.1 127 387-513 3-131 (220)
138 1zyb_A Transcription regulator 99.7 3.6E-16 1.2E-20 157.1 13.3 130 385-514 16-148 (232)
139 3d0s_A Transcriptional regulat 99.7 1.2E-16 4E-21 160.3 9.4 128 386-513 5-132 (227)
140 1vp6_A CNBD, cyclic-nucleotide 99.7 2.6E-16 8.8E-21 144.1 10.7 123 385-514 9-131 (138)
141 3pna_A CAMP-dependent protein 99.6 5.4E-16 1.8E-20 144.9 11.6 118 385-507 36-153 (154)
142 3dkw_A DNR protein; CRP-FNR, H 99.6 2.1E-16 7.1E-21 158.5 9.0 129 385-513 7-136 (227)
143 2gau_A Transcriptional regulat 99.6 7.9E-16 2.7E-20 154.8 11.7 125 390-514 13-137 (232)
144 3iwz_A CAP-like, catabolite ac 99.6 1.5E-15 5.2E-20 152.5 13.6 128 386-513 10-143 (230)
145 3vou_A ION transport 2 domain 99.6 1.8E-15 6.3E-20 138.5 12.7 112 209-350 26-148 (148)
146 4ava_A Lysine acetyltransferas 99.6 1.5E-15 5E-20 161.9 13.2 128 385-514 11-138 (333)
147 3shr_A CGMP-dependent protein 99.6 1.2E-15 4.3E-20 159.8 12.2 142 367-513 19-160 (299)
148 2d93_A RAP guanine nucleotide 99.6 1.7E-16 5.7E-21 144.5 3.4 125 374-503 3-129 (134)
149 3shr_A CGMP-dependent protein 99.6 1.5E-15 5.1E-20 159.1 10.7 130 385-514 155-285 (299)
150 3eff_K Voltage-gated potassium 99.6 4.4E-15 1.5E-19 134.6 11.9 89 208-320 7-95 (139)
151 3ryp_A Catabolite gene activat 99.6 4.5E-15 1.5E-19 146.7 12.7 121 393-513 2-123 (210)
152 2oz6_A Virulence factor regula 99.6 8.9E-15 3E-19 144.2 13.3 116 398-513 1-120 (207)
153 2qcs_B CAMP-dependent protein 99.6 1.6E-14 5.6E-19 150.6 13.9 128 385-512 155-283 (291)
154 3tnp_B CAMP-dependent protein 99.6 4.2E-15 1.4E-19 162.2 9.3 124 382-506 140-263 (416)
155 1o5l_A Transcriptional regulat 99.5 8.4E-15 2.9E-19 145.0 9.4 123 392-514 4-127 (213)
156 3kcc_A Catabolite gene activat 99.5 2.1E-14 7.2E-19 146.8 12.5 119 395-513 54-173 (260)
157 2fmy_A COOA, carbon monoxide o 99.5 8.4E-15 2.9E-19 145.9 8.5 121 386-514 3-123 (220)
158 3tnp_B CAMP-dependent protein 99.5 1.6E-14 5.6E-19 157.5 11.1 130 383-512 263-398 (416)
159 2qcs_B CAMP-dependent protein 99.5 3.7E-14 1.3E-18 147.9 13.2 127 383-514 35-161 (291)
160 1o7f_A CAMP-dependent RAP1 gua 99.5 1.2E-14 4.1E-19 162.7 10.0 142 372-514 27-170 (469)
161 4din_B CAMP-dependent protein 99.5 1.6E-14 5.5E-19 156.0 10.6 127 385-511 246-373 (381)
162 3of1_A CAMP-dependent protein 99.5 1.6E-14 5.6E-19 146.5 9.5 124 385-513 5-128 (246)
163 3of1_A CAMP-dependent protein 99.5 2.3E-14 7.8E-19 145.5 10.5 117 385-505 123-239 (246)
164 1ft9_A Carbon monoxide oxidati 99.5 1.5E-14 5E-19 144.3 7.2 119 388-514 1-119 (222)
165 4din_B CAMP-dependent protein 99.5 4.7E-14 1.6E-18 152.4 11.2 126 383-513 126-251 (381)
166 3e6c_C CPRK, cyclic nucleotide 99.5 4.5E-14 1.5E-18 143.6 10.5 125 387-514 9-133 (250)
167 2k1e_A Water soluble analogue 99.5 1.4E-14 4.8E-19 123.2 3.0 89 208-320 7-95 (103)
168 2q67_A Potassium channel prote 99.4 8.8E-13 3E-17 114.0 13.4 56 265-320 49-104 (114)
169 3ldc_A Calcium-gated potassium 99.4 5.7E-13 1.9E-17 107.6 10.7 54 265-318 28-81 (82)
170 2bgc_A PRFA; bacterial infecti 99.4 4.8E-13 1.6E-17 134.8 12.8 117 396-513 2-123 (238)
171 3la7_A Global nitrogen regulat 99.4 4E-13 1.4E-17 135.8 11.6 114 400-513 30-148 (243)
172 1o7f_A CAMP-dependent RAP1 gua 99.4 3.6E-13 1.2E-17 150.7 12.1 124 383-510 333-458 (469)
173 3ouf_A Potassium channel prote 99.4 1.8E-12 6.2E-17 108.4 11.1 55 265-319 32-86 (97)
174 3cf6_E RAP guanine nucleotide 99.3 1.1E-12 3.8E-17 151.0 9.7 131 373-507 18-150 (694)
175 4f7z_A RAP guanine nucleotide 99.3 2.2E-12 7.6E-17 157.3 11.8 129 377-506 32-162 (999)
176 3b02_A Transcriptional regulat 99.3 4.8E-12 1.6E-16 123.1 9.5 94 413-513 2-95 (195)
177 3pjs_K KCSA, voltage-gated pot 99.2 9.2E-15 3.1E-19 136.4 -12.3 57 265-321 67-123 (166)
178 1xl4_A Inward rectifier potass 99.2 3.7E-11 1.3E-15 122.5 10.9 56 265-320 82-137 (301)
179 2zcw_A TTHA1359, transcription 99.2 1.8E-11 6.3E-16 119.7 7.1 100 406-513 1-102 (202)
180 4f7z_A RAP guanine nucleotide 99.2 3.9E-11 1.3E-15 146.3 11.3 113 384-500 334-448 (999)
181 4dxw_A Navrh, ION transport pr 99.2 7.7E-11 2.6E-15 117.3 10.8 205 74-320 12-225 (229)
182 2qks_A KIR3.1-prokaryotic KIR 99.2 9.7E-11 3.3E-15 120.3 10.9 57 265-321 78-134 (321)
183 1p7b_A Integral membrane chann 99.1 5.7E-11 2E-15 122.3 8.4 57 265-321 96-152 (333)
184 3um7_A Potassium channel subfa 99.1 1.5E-09 5.3E-14 109.7 15.4 56 265-320 115-170 (309)
185 3um7_A Potassium channel subfa 99.0 1.5E-09 5E-14 109.9 12.6 56 265-320 224-285 (309)
186 3sya_A G protein-activated inw 99.0 2.4E-09 8.4E-14 109.6 13.3 98 210-320 47-148 (340)
187 4gx0_A TRKA domain protein; me 98.9 4.6E-09 1.6E-13 119.6 11.0 86 208-318 19-105 (565)
188 3ukm_A Potassium channel subfa 98.9 8.1E-09 2.8E-13 102.8 11.0 54 265-318 93-146 (280)
189 3spc_A Inward-rectifier K+ cha 98.8 9.8E-09 3.3E-13 105.3 11.3 98 210-320 49-151 (343)
190 3ukm_A Potassium channel subfa 98.8 3.5E-09 1.2E-13 105.3 6.4 54 265-318 201-261 (280)
191 2kyh_A KVAP, voltage-gated pot 98.8 7.4E-10 2.5E-14 99.9 1.2 118 54-195 7-126 (147)
192 1ors_C Potassium channel; volt 98.6 9.3E-09 3.2E-13 91.5 2.4 109 74-197 6-116 (132)
193 1lnq_A MTHK channels, potassiu 98.4 1.4E-08 4.9E-13 107.4 -1.7 55 266-320 46-100 (336)
194 3kg2_A Glutamate receptor 2; I 78.7 2.2 7.5E-05 50.3 6.4 55 265-320 563-617 (823)
195 2r9r_B Paddle chimera voltage 74.5 2.3 7.9E-05 46.7 4.6 21 178-198 305-325 (514)
196 3rvy_A ION transport protein; 71.1 6.1 0.00021 39.6 6.5 18 180-197 115-132 (285)
197 4dxw_A Navrh, ION transport pr 67.7 7.5 0.00026 37.4 6.1 18 180-197 100-117 (229)
198 4g26_A Pentatricopeptide repea 67.0 12 0.0004 41.0 8.1 100 586-689 91-198 (501)
199 4g26_A Pentatricopeptide repea 63.0 16 0.00054 40.0 8.2 154 505-663 30-209 (501)
200 2dnf_A Doublecortin domain-con 61.4 6.7 0.00023 32.5 3.6 48 772-820 39-88 (108)
201 2ozj_A Cupin 2, conserved barr 51.8 48 0.0016 27.2 7.7 64 414-488 44-107 (114)
202 1orq_C Potassium channel; volt 49.9 48 0.0016 31.3 8.3 18 171-188 98-115 (223)
203 3fjs_A Uncharacterized protein 49.0 56 0.0019 26.9 7.6 66 411-487 39-104 (114)
204 3rns_A Cupin 2 conserved barre 48.6 48 0.0016 31.5 8.1 68 410-488 39-106 (227)
205 3lwc_A Uncharacterized protein 44.7 65 0.0022 26.9 7.3 65 413-488 45-109 (119)
206 1ibx_B Chimera of IGG binding 40.8 24 0.00083 30.3 3.8 49 771-819 80-135 (145)
207 2eel_A Cell death activator CI 40.7 16 0.00055 28.9 2.5 49 771-819 26-79 (91)
208 1dgw_A Canavalin; duplicated s 38.3 20 0.0007 32.7 3.4 52 410-463 43-94 (178)
209 2pfw_A Cupin 2, conserved barr 38.1 98 0.0034 25.2 7.6 67 411-488 37-103 (116)
210 3es1_A Cupin 2, conserved barr 37.9 31 0.0011 31.2 4.4 67 413-488 84-150 (172)
211 1ors_C Potassium channel; volt 37.5 28 0.00095 29.9 3.9 18 175-192 97-114 (132)
212 1f2r_I Inhibitor of caspase-ac 37.5 32 0.0011 27.7 3.8 50 770-819 34-90 (100)
213 2ih3_C Voltage-gated potassium 36.0 28 0.00097 29.4 3.7 18 216-233 36-53 (122)
214 1yhf_A Hypothetical protein SP 33.9 1.3E+02 0.0045 24.3 7.7 67 411-488 43-109 (115)
215 1v70_A Probable antibiotics sy 31.1 69 0.0024 25.3 5.3 45 412-462 32-77 (105)
216 1fxz_A Glycinin G1; proglycini 30.6 49 0.0017 35.6 5.2 54 409-462 339-393 (476)
217 3jzv_A Uncharacterized protein 30.4 79 0.0027 28.3 5.9 45 412-462 57-101 (166)
218 1d4b_A CIDE B, human cell deat 30.3 12 0.00042 31.2 0.4 53 767-819 48-104 (122)
219 2gu9_A Tetracenomycin polyketi 30.0 73 0.0025 25.7 5.3 45 412-462 25-72 (113)
220 3c3v_A Arachin ARAH3 isoform; 29.5 48 0.0016 35.9 4.9 60 403-462 367-427 (510)
221 3ibm_A Cupin 2, conserved barr 29.0 1.1E+02 0.0039 27.2 6.7 68 412-488 60-128 (167)
222 2kyh_A KVAP, voltage-gated pot 28.8 38 0.0013 29.7 3.3 18 178-195 106-123 (147)
223 2d5f_A Glycinin A3B4 subunit; 28.8 59 0.002 35.1 5.4 61 403-463 362-423 (493)
224 3beh_A MLL3241 protein; transm 28.3 16 0.00055 37.8 0.9 15 174-188 99-113 (355)
225 3h8u_A Uncharacterized conserv 28.2 90 0.0031 25.9 5.7 71 410-488 41-112 (125)
226 3fz3_A Prunin; TREE NUT allerg 27.9 61 0.0021 35.0 5.3 60 403-462 389-449 (531)
227 1o5u_A Novel thermotoga mariti 26.9 87 0.003 25.2 5.0 45 412-463 35-79 (101)
228 2xp1_A SPT6; transcription, IW 26.8 1.7E+02 0.0057 26.5 7.3 39 389-433 11-49 (178)
229 1gp8_A Protein (scaffolding pr 25.7 50 0.0017 21.1 2.4 22 539-560 13-34 (40)
230 4e2g_A Cupin 2 conserved barre 25.7 69 0.0024 26.7 4.5 77 411-498 44-124 (126)
231 2bnm_A Epoxidase; oxidoreducta 25.6 83 0.0028 28.8 5.4 70 414-488 123-196 (198)
232 2i45_A Hypothetical protein; n 25.5 79 0.0027 25.4 4.6 68 415-493 35-103 (107)
233 1zvf_A 3-hydroxyanthranilate 3 24.8 77 0.0026 28.5 4.5 61 426-492 52-115 (176)
234 3zrh_A Ubiquitin thioesterase 24.7 1.3E+02 0.0045 31.0 6.6 51 543-593 26-90 (454)
235 3d0j_A Uncharacterized protein 24.4 73 0.0025 27.5 4.1 65 422-491 44-110 (140)
236 2fqp_A Hypothetical protein BP 23.7 57 0.0019 25.8 3.3 48 412-463 22-70 (97)
237 3kgz_A Cupin 2 conserved barre 23.5 82 0.0028 27.8 4.6 45 412-462 48-92 (156)
238 3i7d_A Sugar phosphate isomera 23.4 75 0.0026 28.3 4.4 45 412-462 47-93 (163)
239 1yfu_A 3-hydroxyanthranilate-3 22.6 87 0.003 28.1 4.4 59 427-492 54-113 (174)
240 1vj2_A Novel manganese-contain 22.5 91 0.0031 26.1 4.6 45 412-462 52-96 (126)
241 1fi2_A Oxalate oxidase, germin 22.5 1.1E+02 0.0036 28.4 5.4 53 411-463 75-130 (201)
242 3rns_A Cupin 2 conserved barre 22.0 1.8E+02 0.006 27.5 7.0 67 410-487 155-222 (227)
243 4f4l_A ION transport protein; 22.0 1.2E+02 0.0043 24.9 5.1 21 264-284 37-57 (112)
244 2vqa_A SLL1358 protein, MNCA; 21.9 82 0.0028 32.3 4.9 50 412-462 56-106 (361)
245 1j58_A YVRK protein; cupin, de 21.4 82 0.0028 32.7 4.9 51 411-462 82-132 (385)
246 2qjv_A Uncharacterized IOLB-li 21.0 3.1E+02 0.011 26.7 8.3 77 409-490 30-110 (270)
247 4i4a_A Similar to unknown prot 20.9 2.2E+02 0.0074 23.5 6.8 79 413-500 39-119 (128)
248 2f4p_A Hypothetical protein TM 20.9 1.5E+02 0.0051 25.6 5.8 69 412-488 52-120 (147)
249 2cav_A Protein (canavalin); vi 20.8 60 0.0021 34.5 3.6 52 410-463 88-139 (445)
250 2e9q_A 11S globulin subunit be 20.4 96 0.0033 33.1 5.1 60 403-462 317-377 (459)
251 1j58_A YVRK protein; cupin, de 20.0 1.3E+02 0.0043 31.2 6.0 74 411-488 260-334 (385)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=100.00 E-value=7.7e-40 Score=352.15 Aligned_cols=341 Identities=18% Similarity=0.179 Sum_probs=137.6
Q ss_pred EcCCChhHHHHHHHHHHHHHHHhhhcceeeeeecCC---CcCeehhHHHHHHHHHHhHhheeeEEEEeCCceEEeeccHH
Q 003425 66 FHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGL---SKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTP 142 (821)
Q Consensus 66 ~~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~---~~~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~~~~v~~~~~ 142 (821)
..|+|+... .+++++++.+++++.+.. +.... ...+..++.++.++|++|+++++..+ +++
T Consensus 3 ~~p~s~~f~---~~~~~~i~ls~~~~~~~t-~~~~~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~------------~~~ 66 (355)
T 3beh_A 3 VLPFLRIYA---PLNAVLAAPGLLAVAALT-IPDMSGRSRLALAALLAVIWGAYLLQLAATLLKR------------RAG 66 (355)
T ss_dssp ----CCSSS---SHHHHHHHHHHHHHHHHT-SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------CSC
T ss_pred CCchhHHHH---HHHHHHHHHHHHHHHHHc-ccchhhhHHHHHHHHHhHHHHHHHHHHHHhcccc------------ccc
Confidence 468887543 344444444444433332 11111 11234556666667899999976321 221
Q ss_pred HHHHHhhh-hhHHHHHhh-hhHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhHHHHHHHHHHHHHHHHH
Q 003425 143 IALRYLRS-SFIIDLFSC-MPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCS 220 (821)
Q Consensus 143 I~~~Ylk~-~f~iDlis~-lP~~~~~~~~~~~~~~~~l~llrl~rl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (821)
..|.++ |.++|++++ +|+...+. .....+|++|++|++|+.|..+.++.+..... .....+..++..++++.
T Consensus 67 --~~~~~~~~~i~Dl~~i~~p~~~~~~--~~~~~~r~lr~~R~lrl~r~~~~~~~l~~~l~--~~~~~l~~~~~~~~~~~ 140 (355)
T 3beh_A 67 --VVRDRTPKIAIDVLAVLVPLAAFLL--DGSPDWSLYCAVWLLKPLRDSTFFPVLGRVLA--NEARNLIGVTTLFGVVL 140 (355)
T ss_dssp --SSCCCHHHHHHHHHHHHHHHHHHHS--CCSGGGGGGGGGGGSHHHHTCSSHHHHHHHHH--HTHHHHHHHHHHHHHHH
T ss_pred --ceeccCcchHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 345555 779999999 68876542 22334455555555555555444444333222 22345667777788889
Q ss_pred HHHHHHHHHHHccCCCCCCCCceeccccCCCCCcccccccchHHHHHHHHHHHHHHhhccccCccccCChhHHHHHHHHH
Q 003425 221 HIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYV 300 (821)
Q Consensus 221 h~~ac~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~ 300 (821)
|++||++|.++...+ .+.+.+|.+|+||+++|||||||||++|.|+.|++++++++
T Consensus 141 ~~~a~~~~~~e~~~~------------------------~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~ 196 (355)
T 3beh_A 141 FAVALAAYVIERDIQ------------------------PEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVM 196 (355)
T ss_dssp HHHHHHHHHHHTTTC------------------------HHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCC------------------------CcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHH
Confidence 999999999875311 11245799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhccccHHHHHhhCcHHHHHHH
Q 003425 301 SFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKI 380 (821)
Q Consensus 301 i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~~y~~~~~~~~~~~~~~l~~lp~~L~~~i 380 (821)
++|++++++++|.+++.+.+. .++ +++.
T Consensus 197 ~~g~~~~~~~~~~i~~~~~~~-----~~~----------------------~~~~------------------------- 224 (355)
T 3beh_A 197 MSGIGIFGLWAGILATGFYQE-----VRR----------------------GDFV------------------------- 224 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHH----------------------HHHH-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHH----------------------Hhhc-------------------------
Confidence 999999999999998766321 000 0010
Q ss_pred HHhhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCC
Q 003425 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNS 460 (821)
Q Consensus 381 ~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~ 460 (821)
...+.++++|+|++++++.++.+...++.+.++|||+|+++||.++++|+|.+|.++++..+ ...+++|+
T Consensus 225 ---~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-------~~~l~~G~ 294 (355)
T 3beh_A 225 ---RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN-------PVELGPGA 294 (355)
T ss_dssp ---HHHC-------------------------------------------------------------------------
T ss_pred ---ccchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC-------eeEECCCC
Confidence 02367888999999999999999999999999999999999999999999999999998743 24789999
Q ss_pred ccccccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425 461 SFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (821)
Q Consensus 461 ~fGe~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~ 514 (821)
+|||.+++.+.|++++++|.++|+++.+++++|.++++++|++...+++.+.++
T Consensus 295 ~fGe~~~l~~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~r 348 (355)
T 3beh_A 295 FFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALER 348 (355)
T ss_dssp ------------------------------------------------------
T ss_pred EEeehHHhCCCCcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888766654
No 2
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=7.6e-36 Score=307.84 Aligned_cols=207 Identities=26% Similarity=0.272 Sum_probs=197.8
Q ss_pred hHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 003425 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 617 (821)
Q Consensus 538 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~ 617 (821)
+|.||||.||..|+.++++.|++.|+++|..|.+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 81 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCCcc-cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Q 003425 618 DGAASLLVKEGASLNVE-EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVF 696 (821)
Q Consensus 618 ~~~v~~Ll~~~~~~~~~-~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~ 696 (821)
.+++++|+++|++++.. +|.||||.|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++
T Consensus 82 ~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 161 (261)
T 2xai_A 82 WDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 161 (261)
T ss_dssp HHHHHHHHHTTCCSSCSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 99999999999998864 48899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCccccccCC
Q 003425 697 PKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKRNP 745 (821)
Q Consensus 697 ~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~~~~ 745 (821)
. |..|.||||+|+..|+.+++++|+++|++++..+..|.++.+.....
T Consensus 162 ~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~ 209 (261)
T 2xai_A 162 Q-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPE 209 (261)
T ss_dssp C-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTT
T ss_pred C-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhcccc
Confidence 6 88999999999999999999999999999999999999998766543
No 3
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.6e-36 Score=315.45 Aligned_cols=212 Identities=23% Similarity=0.230 Sum_probs=190.1
Q ss_pred cchhhhHhhhHHHHhhcCCHHHHHHHHHcCCC---CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 003425 533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGAD---PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPL 609 (821)
Q Consensus 533 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~---~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL 609 (821)
+..+..|.||||.||..|+.+++++|++.|++ ++.+|..|.||||+||..|+.+++++|+++|++++.+|..|.|||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL 82 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL 82 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 45788999999999999999999999999998 789999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHhcCCC-----------------------------------------------CCc--ccccchh
Q 003425 610 LEAIKYGNDGAASLLVKEGAS-----------------------------------------------LNV--EEAGSFL 640 (821)
Q Consensus 610 ~~A~~~~~~~~v~~Ll~~~~~-----------------------------------------------~~~--~~~~t~l 640 (821)
|+|+..|+.+++++|+++|++ ++. ..|.|||
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L 162 (282)
T 1oy3_D 83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL 162 (282)
T ss_dssp HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHH
Confidence 999999999999999998865 222 3588999
Q ss_pred hHHHhcCCHHHHHHHHHCCCCCCCCCCC-CCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q 003425 641 CTAVARGDSDLLKRVLSNGIDPNTRDYD-LRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIK 719 (821)
Q Consensus 641 ~~A~~~~~~~~v~~Ll~~g~~~~~~d~~-g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~ 719 (821)
|.|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus 163 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~ 242 (282)
T 1oy3_D 163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR 242 (282)
T ss_dssp HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHH
Confidence 9999999999999999999999999864 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccccCCCCCCccccccC
Q 003425 720 LLEDAKSTQLLEFPHGFQDTADKRN 744 (821)
Q Consensus 720 ~Ll~~~a~~~~~~~~~~~~~~~~~~ 744 (821)
+|+++|+++...+..|.+|......
T Consensus 243 ~Ll~~ga~~~~~~~~g~tpl~~a~~ 267 (282)
T 1oy3_D 243 LLRAHGAPEPEDGGDKLSPCSSSGS 267 (282)
T ss_dssp HHHHTTCCCCCCC------------
T ss_pred HHHHcCCCcCcCCCcccccccccCC
Confidence 9999999999999999998765544
No 4
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.9e-35 Score=308.75 Aligned_cols=211 Identities=25% Similarity=0.268 Sum_probs=202.1
Q ss_pred ccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 003425 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLE 611 (821)
Q Consensus 532 ~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~ 611 (821)
....+..|.||||.||..|+.++++.|++.|+++|.+|.+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus 52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~ 131 (285)
T 3d9h_A 52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFN 131 (285)
T ss_dssp TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHH
T ss_pred ccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHhcCCCCCcc-cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 003425 612 AIKYGNDGAASLLVKEGASLNVE-EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE 690 (821)
Q Consensus 612 A~~~~~~~~v~~Ll~~~~~~~~~-~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~ 690 (821)
|+..|+.+++++|+++|++++.. +|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus 132 A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~ 211 (285)
T 3d9h_A 132 ACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 211 (285)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999998754 48999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCcccccc
Q 003425 691 AGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKR 743 (821)
Q Consensus 691 ~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~~ 743 (821)
+|++++. |..|.||||+|+..|+.+++++|+++|++....+..|.++.....
T Consensus 212 ~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~ 263 (285)
T 3d9h_A 212 SGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP 263 (285)
T ss_dssp TTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC
T ss_pred CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc
Confidence 9999995 889999999999999999999999999999999999988876554
No 5
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=9.2e-36 Score=305.76 Aligned_cols=209 Identities=23% Similarity=0.247 Sum_probs=116.9
Q ss_pred ccchhhhHhhhHHHHhhcC-------------CHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 003425 532 ISKHEAELALKVNSAAYHG-------------DLYQLEGLIRAGADPNR-TDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597 (821)
Q Consensus 532 ~~~~~~~~~~~L~~A~~~g-------------~~~~v~~Ll~~g~~~n~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 597 (821)
++..|.+|.||||.|+..| +.++++.|++.|++++. .|..|.||||+|+..|+.+++++|+++|++
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 82 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD 82 (253)
T ss_dssp -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 4455666666777666655 66666666666666643 366666777777766677777777766666
Q ss_pred CCCCCCCCCcHHHHHHHcCChHHHHHHHhcCC-CCCcc--cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q 003425 598 INLKDNFGNTPLLEAIKYGNDGAASLLVKEGA-SLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLH 674 (821)
Q Consensus 598 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~-~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh 674 (821)
++.+|..|.||||+|+..|+.+++++|+++++ +++.. +|.||||.|+..|+.+++++|+++|++++.+|..|.||||
T Consensus 83 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~ 162 (253)
T 1yyh_A 83 ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162 (253)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHH
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence 66666666677777776666677776666654 44433 3666677777666666777777666666666666667777
Q ss_pred HHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCccc
Q 003425 675 VAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTA 740 (821)
Q Consensus 675 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~ 740 (821)
+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++...+..|.++..
T Consensus 163 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~ 228 (253)
T 1yyh_A 163 WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD 228 (253)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHH
Confidence 777666667777777666666666666677777777667777777777766666666666665554
No 6
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=4e-35 Score=297.96 Aligned_cols=215 Identities=25% Similarity=0.258 Sum_probs=203.8
Q ss_pred cccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 003425 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLL 610 (821)
Q Consensus 531 ~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~ 610 (821)
+.+..+..|.||||.||..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 82 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH 82 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence 45567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHhcC-CCCCcc--cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHH
Q 003425 611 EAIKYGNDGAASLLVKEG-ASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKL 687 (821)
Q Consensus 611 ~A~~~~~~~~v~~Ll~~~-~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~ 687 (821)
+|+..|+.+++++|+++| .+++.. .|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++
T Consensus 83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 162 (237)
T 3b7b_A 83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162 (237)
T ss_dssp HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHH
Confidence 999999999999999998 676654 48899999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCccccccCC
Q 003425 688 LVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKRNP 745 (821)
Q Consensus 688 Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~~~~ 745 (821)
|+++|++++.+|..|.||||+|+..|+.+++++|+++|++....+..|.++.......
T Consensus 163 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~ 220 (237)
T 3b7b_A 163 LLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLN 220 (237)
T ss_dssp HHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTT
T ss_pred HHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998887655443
No 7
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=8.5e-35 Score=296.35 Aligned_cols=211 Identities=21% Similarity=0.242 Sum_probs=196.5
Q ss_pred cchhhhHhhhHHHHhhcCCHHHHHHHHH----cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 003425 533 SKHEAELALKVNSAAYHGDLYQLEGLIR----AGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTP 608 (821)
Q Consensus 533 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~----~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tp 608 (821)
+..|.+|.||||.||..|+.++++.|++ .|.+++..|..|.||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 82 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA 82 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence 4678899999999999999999999997 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHhcCC----CCCcc--cccchhhHHHhcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCc
Q 003425 609 LLEAIKYGNDGAASLLVKEGA----SLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRD-YDLRTPLHVAASEGL 681 (821)
Q Consensus 609 L~~A~~~~~~~~v~~Ll~~~~----~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d-~~g~T~Lh~A~~~g~ 681 (821)
||+|+..|+.+++++|+++++ +++.. .|.||||.|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+
T Consensus 83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence 999999999999999999987 55543 58899999999999999999999999999998 889999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCcccccc
Q 003425 682 YLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKR 743 (821)
Q Consensus 682 ~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~~ 743 (821)
.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++...+..|.++...+.
T Consensus 163 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~ 224 (241)
T 1k1a_A 163 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR 224 (241)
T ss_dssp HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCS
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888888765443
No 8
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=8.9e-35 Score=314.13 Aligned_cols=239 Identities=25% Similarity=0.299 Sum_probs=215.2
Q ss_pred hchHHHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 003425 502 CDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAAS 581 (821)
Q Consensus 502 ~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~ 581 (821)
+.....+..+....+.+.....+.. ....++..+..|.||||.||..|+.+++++|++.|++++.+|..|.||||+|+.
T Consensus 22 ~~~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 100 (351)
T 3utm_A 22 EYKKDELLEAARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACS 100 (351)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHCCT-TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred cccchhHHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHH
Confidence 3445556666666666544444443 344566778899999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCc----------------------------
Q 003425 582 RGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNV---------------------------- 633 (821)
Q Consensus 582 ~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~---------------------------- 633 (821)
.|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.
T Consensus 101 ~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~ 180 (351)
T 3utm_A 101 YGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH 180 (351)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhccc
Confidence 9999999999999999999999999999999999999999999999998764
Q ss_pred ----------------------------ccccchhhHHHhc---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcH
Q 003425 634 ----------------------------EEAGSFLCTAVAR---GDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLY 682 (821)
Q Consensus 634 ----------------------------~~~~t~l~~A~~~---~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~ 682 (821)
..+.||||.|+.. ++.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus 181 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~ 260 (351)
T 3utm_A 181 SLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHN 260 (351)
T ss_dssp HHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred HHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCH
Confidence 2367999999999 558999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCcccc
Q 003425 683 LMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTAD 741 (821)
Q Consensus 683 ~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~ 741 (821)
+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+++...+..|.++...
T Consensus 261 ~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~ 319 (351)
T 3utm_A 261 DVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQM 319 (351)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhh
Confidence 99999999999999999999999999999999999999999999999999888876553
No 9
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.8e-35 Score=302.77 Aligned_cols=210 Identities=23% Similarity=0.245 Sum_probs=169.5
Q ss_pred chhhhHhhhHHHHhhcCCHHHHHHHHHcCCC--------CCCCCCCCCcHHHHHHHcCCH-HHHHHHHHcCCCCCCCCCC
Q 003425 534 KHEAELALKVNSAAYHGDLYQLEGLIRAGAD--------PNRTDYDGRSPLHLAASRGYE-EIMTFLIQKGVDINLKDNF 604 (821)
Q Consensus 534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~--------~n~~d~~g~t~L~~A~~~g~~-~~v~~Ll~~g~~~~~~~~~ 604 (821)
++|..+.++|+.||..|+.++|+.|++.|++ ++..+..|.||||.|+..++. .++++|++.|+++|.+|.+
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~ 85 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD 85 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTT
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence 4566788999999999999999999998875 456678899999999988775 5889999999999999999
Q ss_pred CCcHHHHHHHcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcH
Q 003425 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLY 682 (821)
Q Consensus 605 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~ 682 (821)
|.||||+|+..|+.+++++|++.|++++.. +|.||++.|+..++.+++++|+++|+++|.+|..|.||||+||..|+.
T Consensus 86 G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~ 165 (269)
T 4b93_B 86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHH 165 (269)
T ss_dssp SCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCG
T ss_pred CCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence 999999999999999999999999998875 488999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCcccccc
Q 003425 683 LMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKR 743 (821)
Q Consensus 683 ~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~~ 743 (821)
+++++|+++|+|+|.+|..|+||||+|+..|+.+++++|+++|++++..+..|.+|...+.
T Consensus 166 ~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~ 226 (269)
T 4b93_B 166 ELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAE 226 (269)
T ss_dssp GGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSC
T ss_pred HHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998877554
No 10
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=6.6e-35 Score=295.15 Aligned_cols=219 Identities=27% Similarity=0.358 Sum_probs=186.4
Q ss_pred HHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 003425 508 LTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEI 587 (821)
Q Consensus 508 l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~ 587 (821)
+..+...++.+.....+..... ..+..+..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.++
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 88 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEI 88 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGG-GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHHHHhCCHHHHHHHHHhchh-hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHH
Confidence 3444444444433344433322 245567788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCccc--ccchhhHHHhcCCHHHHHHHHHCCCCCCCC
Q 003425 588 MTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTR 665 (821)
Q Consensus 588 v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~ 665 (821)
+++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+ |.||||.|+..|+.+++++|+++|++++.+
T Consensus 89 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 168 (231)
T 3aji_A 89 VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ 168 (231)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC
T ss_pred HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccc
Confidence 999999999999999999999999999999999999999998887654 789999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Q 003425 666 DYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKST 727 (821)
Q Consensus 666 d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~ 727 (821)
|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+|+|+..++.+++++|+++|++
T Consensus 169 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 169 DTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence 99999999999999999999999999999999999999999999999999999999988875
No 11
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.1e-34 Score=293.57 Aligned_cols=195 Identities=21% Similarity=0.213 Sum_probs=182.9
Q ss_pred hHhhhHHHHhhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-----CCCCCCCCcHHHH
Q 003425 538 ELALKVNSAAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDI-----NLKDNFGNTPLLE 611 (821)
Q Consensus 538 ~~~~~L~~A~~~g~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----~~~~~~g~tpL~~ 611 (821)
.|.||||.||..|+.++++.|++. |+++|.+|..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 478999999999999999999998 9999999999999999999999999999999999887 6778899999999
Q ss_pred HHHcCChHHHHHHHhcCCCCCcc---------------cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 003425 612 AIKYGNDGAASLLVKEGASLNVE---------------EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVA 676 (821)
Q Consensus 612 A~~~~~~~~v~~Ll~~~~~~~~~---------------~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A 676 (821)
|+..|+.+++++|+++|++++.. .|.||||.|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A 161 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL 161 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 99999999999999999998875 488999999999999999999999999999999999999999
Q ss_pred HHcCcHHHH----HHHHHcCCCC------CCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccC
Q 003425 677 ASEGLYLMA----KLLVEAGASV------FPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEF 732 (821)
Q Consensus 677 ~~~g~~~~v----~~Ll~~ga~~------~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~ 732 (821)
+..|+.+++ ++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|+......
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~~~~ 227 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAH 227 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccchhhh
Confidence 999999988 9999999998 5899999999999999999999999999998876543
No 12
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=6e-34 Score=286.39 Aligned_cols=196 Identities=27% Similarity=0.327 Sum_probs=188.9
Q ss_pred chhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHH
Q 003425 534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV-DINLKDNFGNTPLLEA 612 (821)
Q Consensus 534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~tpL~~A 612 (821)
..+..|.||||.||..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++++ +++..+..|.||||+|
T Consensus 20 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A 99 (223)
T 2f8y_A 20 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 99 (223)
T ss_dssp CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHH
T ss_pred ccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHH
Confidence 347789999999999999999999999999999999999999999999999999999999987 8999999999999999
Q ss_pred HHcCChHHHHHHHhcCCCCCccc--ccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 003425 613 IKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE 690 (821)
Q Consensus 613 ~~~~~~~~v~~Ll~~~~~~~~~~--~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~ 690 (821)
+..|+.+++++|+++|++++..+ |.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus 100 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 179 (223)
T 2f8y_A 100 ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 179 (223)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999988764 8899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc
Q 003425 691 AGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQL 729 (821)
Q Consensus 691 ~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~ 729 (821)
+|++++.+|..|.||+++|+..|+.+++++|+++|+...
T Consensus 180 ~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 180 HFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218 (223)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred cCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence 999999999999999999999999999999999998754
No 13
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=5.3e-34 Score=287.85 Aligned_cols=206 Identities=26% Similarity=0.284 Sum_probs=192.4
Q ss_pred HhhhHHHHhhcCCHHHHHHHHHcCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCC-CCCCCCcHHHHHHH
Q 003425 539 LALKVNSAAYHGDLYQLEGLIRAGADPN-RTDYDGRSPLHLAASRGYEEIMTFLIQKG--VDINL-KDNFGNTPLLEAIK 614 (821)
Q Consensus 539 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~n-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~-~~~~g~tpL~~A~~ 614 (821)
|.||||.||..|+.++++.|++.|.+++ ..|..|.||||+|+..|+.+++++|+++| ++++. .+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 6799999999999999999999998865 48999999999999999999999999999 55555 78899999999999
Q ss_pred cCChHHHHHHHhcC--CCCCcc--cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 003425 615 YGNDGAASLLVKEG--ASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE 690 (821)
Q Consensus 615 ~~~~~~v~~Ll~~~--~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~ 690 (821)
.|+.+++++|+++| ++++.. .|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 161 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG 161 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 99999999999998 776654 48899999999999999999999999999999999999999999999999999999
Q ss_pred cC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-hccccccccCCCCCCccccccC
Q 003425 691 AG-ASVFPKDRWGNTPLDEGRMCGNKNLIKLLE-DAKSTQLLEFPHGFQDTADKRN 744 (821)
Q Consensus 691 ~g-a~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll-~~~a~~~~~~~~~~~~~~~~~~ 744 (821)
+| ++++.+|..|+||||+|+..|+.+++++|+ ++|+++...+..|.++......
T Consensus 162 ~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~ 217 (228)
T 2dzn_A 162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN 217 (228)
T ss_dssp TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSS
T ss_pred cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHH
Confidence 99 999999999999999999999999999999 9999999999999988776543
No 14
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=3.8e-34 Score=293.66 Aligned_cols=194 Identities=27% Similarity=0.326 Sum_probs=184.4
Q ss_pred chhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHH
Q 003425 534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV-DINLKDNFGNTPLLEA 612 (821)
Q Consensus 534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~tpL~~A 612 (821)
..+..|.||||.||..|+.++++.|++.|++++..|..|.||||+|+..|+.+++++|+++|+ +++.++..|.||||+|
T Consensus 52 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A 131 (253)
T 1yyh_A 52 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 131 (253)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHH
Confidence 457889999999999999999999999999999999999999999999999999999999987 8999999999999999
Q ss_pred HHcCChHHHHHHHhcCCCCCccc--ccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 003425 613 IKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE 690 (821)
Q Consensus 613 ~~~~~~~~v~~Ll~~~~~~~~~~--~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~ 690 (821)
+..|+.+++++|+++|++++..+ |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus 132 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 211 (253)
T 1yyh_A 132 ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 211 (253)
T ss_dssp HHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999998764 8999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Q 003425 691 AGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKST 727 (821)
Q Consensus 691 ~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~ 727 (821)
+|++++.+|..|+||+|+|+..|+.+++++|......
T Consensus 212 ~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~ 248 (253)
T 1yyh_A 212 HFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHH 248 (253)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC----
T ss_pred cCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999876543
No 15
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=9.9e-34 Score=286.45 Aligned_cols=205 Identities=30% Similarity=0.341 Sum_probs=194.6
Q ss_pred hHhhhHHHHhhcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 003425 538 ELALKVNSAAYHGDLYQLEGLIRAGAD-PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYG 616 (821)
Q Consensus 538 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~ 616 (821)
.+.+|||.||..|+.+.++.|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 84 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG 84 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence 467899999999999999999988654 6788999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhcCCCCCccc--ccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Q 003425 617 NDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS 694 (821)
Q Consensus 617 ~~~~v~~Ll~~~~~~~~~~--~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~ 694 (821)
+.+++++|+++|++++..+ |.||||.|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++
T Consensus 85 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 164 (231)
T 3aji_A 85 XDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS 164 (231)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Confidence 9999999999999988754 88999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCccccc
Q 003425 695 VFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADK 742 (821)
Q Consensus 695 ~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~ 742 (821)
++.+|..|.||||+|+..|+.+++++|+++|+++...+..|.++....
T Consensus 165 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 212 (231)
T 3aji_A 165 TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212 (231)
T ss_dssp SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHS
T ss_pred ccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 999999999999999999999999999999999999888888876543
No 16
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.2e-33 Score=292.31 Aligned_cols=237 Identities=26% Similarity=0.310 Sum_probs=207.7
Q ss_pred HHHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 003425 505 RKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY 584 (821)
Q Consensus 505 ~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~ 584 (821)
...+..+...+..+.....++.+.+.+. ..+..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 84 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNF-QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGS 84 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCccc-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCC
Confidence 3456666666666666666665544332 226678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc------------cccchhhHHHhcCCHHHH
Q 003425 585 EEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE------------EAGSFLCTAVARGDSDLL 652 (821)
Q Consensus 585 ~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~------------~~~t~l~~A~~~~~~~~v 652 (821)
.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.. .|.||||.|+..|+.+++
T Consensus 85 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v 164 (285)
T 1wdy_A 85 VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL 164 (285)
T ss_dssp HHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999988743 477999999999999999
Q ss_pred HHHHHC-CCCCCCCCCCCCcHHHHHHHcCc----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-ccc
Q 003425 653 KRVLSN-GIDPNTRDYDLRTPLHVAASEGL----YLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLED-AKS 726 (821)
Q Consensus 653 ~~Ll~~-g~~~~~~d~~g~T~Lh~A~~~g~----~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~-~~a 726 (821)
++|++. |++++..|..|.||||+|+..++ .+++++|+++|++++.+|..|.||||+|+..|+.+++++|++ .|+
T Consensus 165 ~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~ 244 (285)
T 1wdy_A 165 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 244 (285)
T ss_dssp HHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSC
T ss_pred HHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCC
Confidence 999987 99999999999999999999998 899999999999999999999999999999999999999999 899
Q ss_pred cccccCCCCCCccccc
Q 003425 727 TQLLEFPHGFQDTADK 742 (821)
Q Consensus 727 ~~~~~~~~~~~~~~~~ 742 (821)
+++..+..|.++....
T Consensus 245 ~~~~~~~~g~t~l~~A 260 (285)
T 1wdy_A 245 EINDTDSDGKTALLLA 260 (285)
T ss_dssp CTTCCCTTSCCHHHHH
T ss_pred CccccCCCCCcHHHHH
Confidence 9888888887776543
No 17
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=4.7e-35 Score=297.20 Aligned_cols=205 Identities=23% Similarity=0.195 Sum_probs=185.3
Q ss_pred chhhhHhhhHHHHhhcCCHHHHHHHHHcCC----CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 003425 534 KHEAELALKVNSAAYHGDLYQLEGLIRAGA----DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPL 609 (821)
Q Consensus 534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~----~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL 609 (821)
..|.+|.||||.|+..|+.++++.|++.+. ++|..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 82 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL 82 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 457789999999999999999999998765 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHhcCCCC------C--cccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHcC
Q 003425 610 LEAIKYGNDGAASLLVKEGASL------N--VEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDY-DLRTPLHVAASEG 680 (821)
Q Consensus 610 ~~A~~~~~~~~v~~Ll~~~~~~------~--~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~-~g~T~Lh~A~~~g 680 (821)
|+|+..|+.+++++|+++|+++ + ...|.||||+|+..|+.+++++|+++|++++.++. .|.||||+|+..|
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~ 162 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ 162 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC
Confidence 9999999999999999998753 2 23589999999999999999999999999999997 9999999999999
Q ss_pred cHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc--ccCCCCCCc
Q 003425 681 LYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQL--LEFPHGFQD 738 (821)
Q Consensus 681 ~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~--~~~~~~~~~ 738 (821)
+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++. ..+..+.++
T Consensus 163 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~ 222 (236)
T 1ikn_D 163 NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEES 222 (236)
T ss_dssp CHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTC
T ss_pred CHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHH
Confidence 9999999999999999999999999999999999999999999999887 444444443
No 18
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-34 Score=297.19 Aligned_cols=220 Identities=21% Similarity=0.268 Sum_probs=161.9
Q ss_pred HHHHhcCCcchhhhhhhccccc------ccccchhhhHhhhHHHHhhcCCHH-HHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 003425 508 LTNLLQGKESDLRLKQLQSDIT------FHISKHEAELALKVNSAAYHGDLY-QLEGLIRAGADPNRTDYDGRSPLHLAA 580 (821)
Q Consensus 508 l~~~l~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~L~~A~~~g~~~-~v~~Ll~~g~~~n~~d~~g~t~L~~A~ 580 (821)
|..+...++.+.....++.... ..++..+..+.||||.|+..++.+ +++.|++.|+|+|.+|.+|+||||+||
T Consensus 15 L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~ 94 (269)
T 4b93_B 15 LLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAA 94 (269)
T ss_dssp HHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 3344444554444444443321 234566788999999999988764 789999999999999999999999999
Q ss_pred HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHC
Q 003425 581 SRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSN 658 (821)
Q Consensus 581 ~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~ 658 (821)
..|+.+++++|++.|++++..+..|.||+|.|+..++.+++++|+++|++++.. .|.||||+|+..|+.+++++|+++
T Consensus 95 ~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ 174 (269)
T 4b93_B 95 LHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQH 174 (269)
T ss_dssp HTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHT
T ss_pred HcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999876 488999999999999999999999
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHhcccc
Q 003425 659 GIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGN-KNLIKLLEDAKST 727 (821)
Q Consensus 659 g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-~~i~~~Ll~~~a~ 727 (821)
|+++|.+|..|.||||+||..|+.++|++|+++|+|++.+|.+|+||||+|+.+++ .++++.|...++.
T Consensus 175 gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~ 244 (269)
T 4b93_B 175 GASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVAS 244 (269)
T ss_dssp TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC-------
T ss_pred CCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchh
Confidence 99999999999999999999999999999999999999999999999999998775 3444444444443
No 19
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=3.4e-34 Score=291.88 Aligned_cols=224 Identities=21% Similarity=0.232 Sum_probs=196.4
Q ss_pred chHHHHHHHhcCCcchhhhhhhcc--cccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 003425 503 DGRKVLTNLLQGKESDLRLKQLQS--DITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAA 580 (821)
Q Consensus 503 ~~~~~l~~~l~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~ 580 (821)
.+...+..+...+..+.....++. .....++..+..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+
T Consensus 8 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 8 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 344556666666555444333331 123345667788999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHcCC----CCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCccc---ccchhhHHHhcCCHHHHH
Q 003425 581 SRGYEEIMTFLIQKGV----DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE---AGSFLCTAVARGDSDLLK 653 (821)
Q Consensus 581 ~~g~~~~v~~Ll~~g~----~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~---~~t~l~~A~~~~~~~~v~ 653 (821)
..|+.+++++|+++++ +++..+..|.||||+|+..|+.+++++|+++|++++..+ |.||||.|+..|+.++++
T Consensus 88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 167 (241)
T 1k1a_A 88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167 (241)
T ss_dssp HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHH
Confidence 9999999999999987 899999999999999999999999999999999998754 889999999999999999
Q ss_pred HHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccc
Q 003425 654 RVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKS 726 (821)
Q Consensus 654 ~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a 726 (821)
+|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+|+|+..|+.++++.|.+.++
T Consensus 168 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 168 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240 (241)
T ss_dssp HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred HHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998765
No 20
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=4.3e-33 Score=275.17 Aligned_cols=189 Identities=26% Similarity=0.313 Sum_probs=179.6
Q ss_pred hhHhhhHHHHhhcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 003425 537 AELALKVNSAAYHGDLYQLEGLIRAGA-DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKY 615 (821)
Q Consensus 537 ~~~~~~L~~A~~~g~~~~v~~Ll~~g~-~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~ 615 (821)
..+.||||.||..|+.+.++.|++.+. ++|..|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 346799999999999999999999876 9999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHH-hcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHcCc-----HHHHH
Q 003425 616 GNDGAASLLV-KEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNG-IDPNTRDYDLRTPLHVAASEGL-----YLMAK 686 (821)
Q Consensus 616 ~~~~~v~~Ll-~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~T~Lh~A~~~g~-----~~~v~ 686 (821)
|+.+++++|+ ..+++++.. .|.||||.|+..|+.+++++|+++| ++++.+|..|.||||+|+..++ .++++
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence 9999999999 556677664 4889999999999999999999999 9999999999999999999998 99999
Q ss_pred HHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcc
Q 003425 687 LLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAK 725 (821)
Q Consensus 687 ~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~ 725 (821)
+|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 163 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 163 LLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 999999999999999999999999999999999999886
No 21
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=4.4e-34 Score=298.30 Aligned_cols=198 Identities=21% Similarity=0.149 Sum_probs=186.8
Q ss_pred ccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 003425 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLE 611 (821)
Q Consensus 532 ~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~ 611 (821)
++..|..|.||||+||..|+.+++++|++.|+++|..| |.||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus 24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~ 101 (285)
T 3kea_A 24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYY 101 (285)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHH
Confidence 56778899999999999999999999999999999884 8999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHhcCCCCCccc--c-cchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHH
Q 003425 612 AIKYGNDGAASLLVKEGASLNVEE--A-GSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLL 688 (821)
Q Consensus 612 A~~~~~~~~v~~Ll~~~~~~~~~~--~-~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~L 688 (821)
|+..|+.+++++|+++|++++..+ | .||||.|+..|+.+++++|+++|++.... ..|.||||+|+..|+.+++++|
T Consensus 102 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~L 180 (285)
T 3kea_A 102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILL 180 (285)
T ss_dssp HHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHH
Confidence 999999999999999999998765 5 79999999999999999999999887433 2799999999999999999999
Q ss_pred HHcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhccccccccC
Q 003425 689 VEAGASVFPKDRWGNTP-LDEGRMCGNKNLIKLLEDAKSTQLLEF 732 (821)
Q Consensus 689 l~~ga~~~~~d~~g~t~-l~~A~~~~~~~i~~~Ll~~~a~~~~~~ 732 (821)
+++|++++.+|..|+|| ||+|+..|+.+++++|+++|++++..+
T Consensus 181 l~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 181 LDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTT
T ss_pred HHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 99999999999999998 999999999999999999999987765
No 22
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=9.5e-33 Score=288.70 Aligned_cols=226 Identities=24% Similarity=0.251 Sum_probs=207.5
Q ss_pred HHHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 003425 505 RKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY 584 (821)
Q Consensus 505 ~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~ 584 (821)
...++.+...+..+.....++++.+ ++..+..|.||||.|+..|+.+++++|+++|++++..|..|.||||+|+..|+
T Consensus 40 ~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 117 (285)
T 1wdy_A 40 WTPLHNAVQMSREDIVELLLRHGAD--PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK 117 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTC
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCC--CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCC
Confidence 4567777777766666666665544 44567789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCC----------CCCCCcHHHHHHHcCChHHHHHHHhc-CCCCCcc--cccchhhHHHhcCC---
Q 003425 585 EEIMTFLIQKGVDINLK----------DNFGNTPLLEAIKYGNDGAASLLVKE-GASLNVE--EAGSFLCTAVARGD--- 648 (821)
Q Consensus 585 ~~~v~~Ll~~g~~~~~~----------~~~g~tpL~~A~~~~~~~~v~~Ll~~-~~~~~~~--~~~t~l~~A~~~~~--- 648 (821)
.+++++|+++|++++.. +..|.||||+|+..|+.+++++|++. |++++.. .|.||||.|+..++
T Consensus 118 ~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~ 197 (285)
T 1wdy_A 118 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD 197 (285)
T ss_dssp HHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTT
T ss_pred HHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccch
Confidence 99999999999999987 78899999999999999999999997 9988875 48899999999999
Q ss_pred -HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccc
Q 003425 649 -SDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE-AGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKS 726 (821)
Q Consensus 649 -~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a 726 (821)
.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|+
T Consensus 198 ~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga 277 (285)
T 1wdy_A 198 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 277 (285)
T ss_dssp HHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSS
T ss_pred HHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred cccccC
Q 003425 727 TQLLEF 732 (821)
Q Consensus 727 ~~~~~~ 732 (821)
++...+
T Consensus 278 ~~~~~d 283 (285)
T 1wdy_A 278 STDCGD 283 (285)
T ss_dssp CSCCSS
T ss_pred CCCccc
Confidence 987664
No 23
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2e-33 Score=289.63 Aligned_cols=215 Identities=20% Similarity=0.256 Sum_probs=191.0
Q ss_pred HHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 003425 508 LTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEI 587 (821)
Q Consensus 508 l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~ 587 (821)
+..+......+.....++++. +++..+..|.||||.||..|+.++++.|++.|+++|..|..|.||||+|+..|+.++
T Consensus 7 L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 84 (261)
T 2xai_A 7 MHEAAIHGHQLSLRNLISQGW--AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDC 84 (261)
T ss_dssp HHHHHHHTCHHHHHHHHHTTC--CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCC--CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 444444445444444555443 355677889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHCCCCCCCC
Q 003425 588 MTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTR 665 (821)
Q Consensus 588 v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~ 665 (821)
+++|+++|++++. +..|.||||+|+..|+.+++++|+++|++++.. .|.||||.|+..|+.+++++|+++|+++|.
T Consensus 85 v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~- 162 (261)
T 2xai_A 85 VNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ- 162 (261)
T ss_dssp HHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-
T ss_pred HHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-
Confidence 9999999999986 456999999999999999999999999999875 478999999999999999999999999996
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccc
Q 003425 666 DYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQ 728 (821)
Q Consensus 666 d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~ 728 (821)
|..|.||||+|+..|+.+++++|+++|+|++.+|..|+||+|+|+.++ +++++|+++++.+
T Consensus 163 ~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~ 223 (261)
T 2xai_A 163 GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPP 223 (261)
T ss_dssp CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCC
T ss_pred CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccccc--cHHHHHHhccCCc
Confidence 889999999999999999999999999999999999999999999665 5899999987654
No 24
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.9e-33 Score=296.50 Aligned_cols=209 Identities=28% Similarity=0.305 Sum_probs=192.8
Q ss_pred chhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 003425 534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAI 613 (821)
Q Consensus 534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~ 613 (821)
..+..+.||||.||..|+.++++.|++.|+++|..|..|.||||+||..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 35 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~ 114 (299)
T 1s70_B 35 KVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA 114 (299)
T ss_dssp CCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred ccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHC-CCCC--------------------------CC
Q 003425 614 KYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSN-GIDP--------------------------NT 664 (821)
Q Consensus 614 ~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~-g~~~--------------------------~~ 664 (821)
..|+.+++++|+++|++++.. +|.||||.|+..++.++++.++.. |.++ ..
T Consensus 115 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 194 (299)
T 1s70_B 115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR 194 (299)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred HcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhh
Confidence 999999999999999998875 488999999999999999887753 4333 34
Q ss_pred CCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCccccc
Q 003425 665 RDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADK 742 (821)
Q Consensus 665 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~ 742 (821)
.+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++...+..|.++.+..
T Consensus 195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A 272 (299)
T 1s70_B 195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA 272 (299)
T ss_dssp CTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred hcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence 567899999999999999999999999999999999999999999999999999999999999999998888876544
No 25
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.4e-33 Score=304.57 Aligned_cols=223 Identities=18% Similarity=0.140 Sum_probs=128.2
Q ss_pred hHHHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 003425 504 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG 583 (821)
Q Consensus 504 ~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g 583 (821)
+...+..+......+.....++++.+ ++..+..|.||||+||..|+.+++++|++.|++++. .+|.||||+|+..|
T Consensus 20 g~t~L~~Aa~~g~~~~v~~Ll~~g~~--~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~g 95 (364)
T 3ljn_A 20 NMEKIHVAARKGQTDEVRRLIETGVS--PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMAN 95 (364)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHTT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCC--ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHHcC
Confidence 33444444444444444444443322 233444555555555555555555555555554332 24555555555555
Q ss_pred CHHHHHHHHHc----CCCCCC-----------------CCCCCCcHHHHHHHcC--ChHHHHHHHhcCCCCCccc--ccc
Q 003425 584 YEEIMTFLIQK----GVDINL-----------------KDNFGNTPLLEAIKYG--NDGAASLLVKEGASLNVEE--AGS 638 (821)
Q Consensus 584 ~~~~v~~Ll~~----g~~~~~-----------------~~~~g~tpL~~A~~~~--~~~~v~~Ll~~~~~~~~~~--~~t 638 (821)
+.+++++|+++ |++++. .|..|.||||+|+..| +.+++++|+++|++++..+ |.|
T Consensus 96 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t 175 (364)
T 3ljn_A 96 KTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADET 175 (364)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCC
T ss_pred CHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCC
Confidence 55555555555 444444 5556666666666666 6666666666666655543 556
Q ss_pred hhhHHHhcCCHHHHHHHHHCCCC-----CCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q 003425 639 FLCTAVARGDSDLLKRVLSNGID-----PNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCG 713 (821)
Q Consensus 639 ~l~~A~~~~~~~~v~~Ll~~g~~-----~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~ 713 (821)
|||+|+..|+.+++++|+++|++ +|..|..|+||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+..|
T Consensus 176 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g 255 (364)
T 3ljn_A 176 PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAA 255 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC
Confidence 66666666666666666666665 6666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHhccccccc
Q 003425 714 NKNLIKLLEDAKSTQLL 730 (821)
Q Consensus 714 ~~~i~~~Ll~~~a~~~~ 730 (821)
+.+++++|+++|++...
T Consensus 256 ~~~~v~~Ll~~~~~~~~ 272 (364)
T 3ljn_A 256 MVLLTKELLQKTDVFLI 272 (364)
T ss_dssp CHHHHHHHHHHSCHHHH
T ss_pred hHHHHHHHHHcCCchhh
Confidence 66666666666665543
No 26
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=4.7e-34 Score=293.72 Aligned_cols=193 Identities=20% Similarity=0.119 Sum_probs=180.2
Q ss_pred HhhhHHHHhhcCCHH----HHHHHHHcCCCCCC----CCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCC------
Q 003425 539 LALKVNSAAYHGDLY----QLEGLIRAGADPNR----TDYDGRSPLHLAASR---GYEEIMTFLIQKGVDINLK------ 601 (821)
Q Consensus 539 ~~~~L~~A~~~g~~~----~v~~Ll~~g~~~n~----~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~------ 601 (821)
|.||||.||..|+.+ ++++|++.|+++|. .|..|.||||+|+.. |+.+++++|+++|++++..
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence 689999999999997 66777779999998 899999999999999 9999999999999887643
Q ss_pred -----CCCCCcHHHHHHHcCChHHHHHHHhcCCCCCccc---------------ccchhhHHHhcCCHHHHHHHHH---C
Q 003425 602 -----DNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE---------------AGSFLCTAVARGDSDLLKRVLS---N 658 (821)
Q Consensus 602 -----~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~---------------~~t~l~~A~~~~~~~~v~~Ll~---~ 658 (821)
|..|.||||+|+..|+.+++++|+++|++++..+ |.||||.|+..|+.+++++|++ +
T Consensus 82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ 161 (256)
T 2etb_A 82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ 161 (256)
T ss_dssp CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 3779999999999999999999999999998764 8899999999999999999999 9
Q ss_pred CCCCCCCCCCCCcHHHHHHH--cCcHH-------HHHHHHHcCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 003425 659 GIDPNTRDYDLRTPLHVAAS--EGLYL-------MAKLLVEAGASV-------FPKDRWGNTPLDEGRMCGNKNLIKLLE 722 (821)
Q Consensus 659 g~~~~~~d~~g~T~Lh~A~~--~g~~~-------~v~~Ll~~ga~~-------~~~d~~g~t~l~~A~~~~~~~i~~~Ll 722 (821)
|+++|.+|..|+||||+|+. .++.+ ++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+
T Consensus 162 ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll 241 (256)
T 2etb_A 162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL 241 (256)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999 78888 999999999999 999999999999999999999999999
Q ss_pred hcccccccc
Q 003425 723 DAKSTQLLE 731 (821)
Q Consensus 723 ~~~a~~~~~ 731 (821)
++|++....
T Consensus 242 ~~g~~~~~~ 250 (256)
T 2etb_A 242 QREFSGAAA 250 (256)
T ss_dssp HHHHHHHHH
T ss_pred hCCCCCCCc
Confidence 999886543
No 27
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=9.2e-33 Score=262.56 Aligned_cols=159 Identities=43% Similarity=0.606 Sum_probs=134.7
Q ss_pred hhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChH
Q 003425 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDG 619 (821)
Q Consensus 540 ~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~ 619 (821)
.++|+.||..|+.++|+.|++.|+|+|.+|.+|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus 5 g~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~ 84 (169)
T 4gpm_A 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE 84 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999988877776
Q ss_pred HHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 003425 620 AASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKD 699 (821)
Q Consensus 620 ~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d 699 (821)
++++|++ +|+++|.+|.+|+||||+||..|+.+++++|+++|+|++.+|
T Consensus 85 ~v~~Ll~-------------------------------~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d 133 (169)
T 4gpm_A 85 VVKLLIS-------------------------------KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSD 133 (169)
T ss_dssp HHHHHHH-------------------------------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHH-------------------------------CcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC
Confidence 6666655 455667778888888888888888888888888888888888
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHhcccccc
Q 003425 700 RWGNTPLDEGRMCGNKNLIKLLEDAKSTQL 729 (821)
Q Consensus 700 ~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~ 729 (821)
..|+||||+|+..|+.+++++|+++||+..
T Consensus 134 ~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 134 SDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163 (169)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence 888888888888888888888888888754
No 28
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.7e-33 Score=304.44 Aligned_cols=227 Identities=21% Similarity=0.266 Sum_probs=196.5
Q ss_pred hchHHHHHHHhcCCcchhhhhhhcc------cccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 003425 502 CDGRKVLTNLLQGKESDLRLKQLQS------DITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSP 575 (821)
Q Consensus 502 ~~~~~~l~~~l~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~ 575 (821)
..+...++.+......+.....+.+ ....+++..|..|.||||.||..|+.+++++|++.|++++..|..|.||
T Consensus 123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~ 202 (373)
T 2fo1_E 123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA 202 (373)
T ss_dssp SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCH
Confidence 3455666666665554332222210 1223456678889999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcC---CCCCCCCCCCCcHHHHHHHcC---ChHHHHHHHhcCCCCCc----------ccccch
Q 003425 576 LHLAASRGYEEIMTFLIQKG---VDINLKDNFGNTPLLEAIKYG---NDGAASLLVKEGASLNV----------EEAGSF 639 (821)
Q Consensus 576 L~~A~~~g~~~~v~~Ll~~g---~~~~~~~~~g~tpL~~A~~~~---~~~~v~~Ll~~~~~~~~----------~~~~t~ 639 (821)
||+|+..|+.+++++|+++| ++++..|..|.||||+|+..+ +.+++++|+++|++++. ..|.||
T Consensus 203 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~ 282 (373)
T 2fo1_E 203 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA 282 (373)
T ss_dssp HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCT
T ss_pred HHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCH
Confidence 99999999999999999987 899999999999999999998 89999999999999875 257899
Q ss_pred hhHHHhcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHH
Q 003425 640 LCTAVARGDSDLLKRVLSNG-IDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLI 718 (821)
Q Consensus 640 l~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~ 718 (821)
||.|+..|+.+++++|+++| ++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+++
T Consensus 283 Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv 362 (373)
T 2fo1_E 283 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIV 362 (373)
T ss_dssp HHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHH
T ss_pred HHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHH
Confidence 99999999999999999875 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccc
Q 003425 719 KLLEDAKSTQ 728 (821)
Q Consensus 719 ~~Ll~~~a~~ 728 (821)
++|++++++.
T Consensus 363 ~~Ll~~~a~~ 372 (373)
T 2fo1_E 363 DIFDRCRPER 372 (373)
T ss_dssp HHHHTTC---
T ss_pred HHHHhcCccc
Confidence 9999998763
No 29
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.4e-32 Score=306.53 Aligned_cols=233 Identities=23% Similarity=0.273 Sum_probs=209.8
Q ss_pred HHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 003425 508 LTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEI 587 (821)
Q Consensus 508 l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~ 587 (821)
+..+......+.....++++. +.+..+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.++
T Consensus 150 L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 227 (437)
T 1n11_A 150 LHVAAKYGKVRVAELLLERDA--HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEV 227 (437)
T ss_dssp HHHHHHTTCHHHHHHHHHTTC--CTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence 444444444444444444433 344566788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHCCCCCCCC
Q 003425 588 MTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTR 665 (821)
Q Consensus 588 v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~ 665 (821)
+++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. .|.||||.|+..|+.+++++|+++|++++.+
T Consensus 228 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~ 307 (437)
T 1n11_A 228 ARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT 307 (437)
T ss_dssp HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCC
T ss_pred HHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCC
Confidence 99999999999999999999999999999999999999999988765 4889999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCccccc
Q 003425 666 DYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADK 742 (821)
Q Consensus 666 d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~ 742 (821)
|..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++..+..|.++....
T Consensus 308 ~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A 384 (437)
T 1n11_A 308 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIA 384 (437)
T ss_dssp CSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHH
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877643
No 30
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=287.75 Aligned_cols=219 Identities=20% Similarity=0.241 Sum_probs=191.8
Q ss_pred HHHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 003425 505 RKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY 584 (821)
Q Consensus 505 ~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~ 584 (821)
...+..+......+.....++.+. .++..+..|.||||.||..|+.+++++|++.|++++..|..|.||||+|+..|+
T Consensus 60 ~t~L~~Aa~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~ 137 (285)
T 3d9h_A 60 WSPMHEAAIHGHQLSLRNLISQGW--AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 137 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTC--CSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTC
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCC--CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCH
Confidence 344555555555554555555443 355677889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHCCCCC
Q 003425 585 EEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDP 662 (821)
Q Consensus 585 ~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~ 662 (821)
.+++++|+++|++++..+ .|.||||+|+..|+.+++++|+++|++++.. .|.||||.|+..|+.+++++|+++|+++
T Consensus 138 ~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 216 (285)
T 3d9h_A 138 WDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 216 (285)
T ss_dssp HHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCC
Confidence 999999999999998654 5999999999999999999999999998875 4889999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc-ccccc
Q 003425 663 NTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDA-KSTQL 729 (821)
Q Consensus 663 ~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~-~a~~~ 729 (821)
+. |..|.||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+ ++.+++++|+++ |++..
T Consensus 217 ~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~ 281 (285)
T 3d9h_A 217 NQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASLP 281 (285)
T ss_dssp TC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred CC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCC
Confidence 95 889999999999999999999999999999999999999999999 567999999998 66543
No 31
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=1.6e-33 Score=292.69 Aligned_cols=205 Identities=20% Similarity=0.164 Sum_probs=175.8
Q ss_pred ccchhhhHhhhHHHHhhcCCHHHHHHHHH----cCCCCC----CCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCC--
Q 003425 532 ISKHEAELALKVNSAAYHGDLYQLEGLIR----AGADPN----RTDYDGRSPLHLAASR---GYEEIMTFLIQKGVDI-- 598 (821)
Q Consensus 532 ~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~----~g~~~n----~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~-- 598 (821)
.+..+..|.||||.||..|+.++|+.|++ .+++++ ..|..|+||||+|+.. |+.+++++|+++|+++
T Consensus 6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~ 85 (273)
T 2pnn_A 6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS 85 (273)
T ss_dssp -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence 34567889999999999999999998887 566666 4588999999999987 9999999999998653
Q ss_pred -----C----CCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCccc----------------ccchhhHHHhcCCHHHHH
Q 003425 599 -----N----LKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE----------------AGSFLCTAVARGDSDLLK 653 (821)
Q Consensus 599 -----~----~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~----------------~~t~l~~A~~~~~~~~v~ 653 (821)
+ ..|..|.||||+|+..|+.+++++|+++|++++..+ |.||||+|+..|+.++++
T Consensus 86 ~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~ 165 (273)
T 2pnn_A 86 LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVK 165 (273)
T ss_dssp HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHH
T ss_pred hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHH
Confidence 2 256789999999999999999999999999998754 889999999999999999
Q ss_pred HHHH---CCCCCCCCCCCCCcHHHHHHHcCc---------HHHHHHHHHcCCCCC-------CCCCCCCCHHHHHHHcCC
Q 003425 654 RVLS---NGIDPNTRDYDLRTPLHVAASEGL---------YLMAKLLVEAGASVF-------PKDRWGNTPLDEGRMCGN 714 (821)
Q Consensus 654 ~Ll~---~g~~~~~~d~~g~T~Lh~A~~~g~---------~~~v~~Ll~~ga~~~-------~~d~~g~t~l~~A~~~~~ 714 (821)
+|++ +|++++.+|..|+||||+|+..|+ .+++++|+++|++++ .+|..|+||||+|+..|+
T Consensus 166 ~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~ 245 (273)
T 2pnn_A 166 FLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK 245 (273)
T ss_dssp HHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred HHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhCh
Confidence 9999 999999999999999999999998 899999999999997 489999999999999999
Q ss_pred HHHHHHHHhccc-cccccCCCCC
Q 003425 715 KNLIKLLEDAKS-TQLLEFPHGF 736 (821)
Q Consensus 715 ~~i~~~Ll~~~a-~~~~~~~~~~ 736 (821)
.+++++|+++|+ ++....+.++
T Consensus 246 ~~iv~~Ll~~ga~dp~~~~~~~~ 268 (273)
T 2pnn_A 246 IGVLAYILQREIHEPECRHAAAH 268 (273)
T ss_dssp HHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHCCCCCchhhhhhhh
Confidence 999999999999 6665554443
No 32
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.8e-32 Score=278.41 Aligned_cols=217 Identities=26% Similarity=0.352 Sum_probs=195.3
Q ss_pred HHHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 003425 505 RKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY 584 (821)
Q Consensus 505 ~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~ 584 (821)
...+..+...+..+.....++++.+ ++..+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+
T Consensus 12 ~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 89 (237)
T 3b7b_A 12 RSPLHAAAEAGHVDICHMLVQAGAN--IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGH 89 (237)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTC
T ss_pred CCHHHHHHHcCcHHHHHHHHHcCCC--cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Confidence 3445555555555555555555443 45567789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHCCCC
Q 003425 585 EEIMTFLIQKG-VDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGID 661 (821)
Q Consensus 585 ~~~v~~Ll~~g-~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~ 661 (821)
.+++++|+++| ++++..+..|.||||+|+..|+.+++++|+++|++++.. .|.||||.|+..|+.+++++|+++|++
T Consensus 90 ~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 169 (237)
T 3b7b_A 90 YEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD 169 (237)
T ss_dssp HHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCC
T ss_pred HHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 99999999998 899999999999999999999999999999999998875 488999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q 003425 662 PNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLED 723 (821)
Q Consensus 662 ~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~ 723 (821)
++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+|+|+.+|+.+.+..|++
T Consensus 170 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 170 LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred CCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999876655554
No 33
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3e-32 Score=303.72 Aligned_cols=237 Identities=22% Similarity=0.208 Sum_probs=183.5
Q ss_pred hHHHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 003425 504 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG 583 (821)
Q Consensus 504 ~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g 583 (821)
+...+..+...+..+.....++++.+ ++..+..|.||||.||..|+.+++++|++.|+++|.+|..|.||||+|+..|
T Consensus 14 g~t~L~~Aa~~g~~~~v~~Ll~~g~~--~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 14 GLTPLHVASFMGHLPIVKNLLQRGAS--PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCC--SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHT
T ss_pred CCCHHHHHHHCCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCC
Confidence 44556666666666655566655443 3445666778888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHCCCC
Q 003425 584 YEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGID 661 (821)
Q Consensus 584 ~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~ 661 (821)
+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++++.+.. .|.||||.|+..|+.+++++|+++|++
T Consensus 92 ~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 171 (437)
T 1n11_A 92 HTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH 171 (437)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 888888888888888888888888888888888888888888887776543 467888888888888888888888888
Q ss_pred CCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCcccc
Q 003425 662 PNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTAD 741 (821)
Q Consensus 662 ~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~ 741 (821)
++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++.+..+..|.++...
T Consensus 172 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~ 251 (437)
T 1n11_A 172 PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHL 251 (437)
T ss_dssp TTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888877777777777664
Q ss_pred c
Q 003425 742 K 742 (821)
Q Consensus 742 ~ 742 (821)
.
T Consensus 252 A 252 (437)
T 1n11_A 252 A 252 (437)
T ss_dssp H
T ss_pred H
Confidence 3
No 34
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.2e-32 Score=299.13 Aligned_cols=213 Identities=20% Similarity=0.186 Sum_probs=195.5
Q ss_pred ccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 003425 528 ITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNT 607 (821)
Q Consensus 528 ~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t 607 (821)
..+..+..|..|.||||.||..|+.++|++|++.|+++|..|..|.||||+||..|+.+++++|+++|++++. ..|.|
T Consensus 9 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t 86 (364)
T 3ljn_A 9 PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQK 86 (364)
T ss_dssp -------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBC
T ss_pred cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCC
Confidence 3456677899999999999999999999999999999999999999999999999999999999999996664 47899
Q ss_pred HHHHHHHcCChHHHHHHHhc----CCCCCc-----------------c--cccchhhHHHhcC--CHHHHHHHHHCCCCC
Q 003425 608 PLLEAIKYGNDGAASLLVKE----GASLNV-----------------E--EAGSFLCTAVARG--DSDLLKRVLSNGIDP 662 (821)
Q Consensus 608 pL~~A~~~~~~~~v~~Ll~~----~~~~~~-----------------~--~~~t~l~~A~~~~--~~~~v~~Ll~~g~~~ 662 (821)
|||+|+..|+.+++++|+++ |++++. . .|.||||+|+..| +.+++++|+++|+++
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~ 166 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP 166 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC
Confidence 99999999999999999998 777654 3 4889999999999 999999999999999
Q ss_pred CCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCC
Q 003425 663 NTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS-----VFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQ 737 (821)
Q Consensus 663 ~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~-----~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~ 737 (821)
+..|..|.||||+|+..|+.+++++|+++|++ ++..|..|+||||+|+..|+.+++++|+++|++++..+..|.+
T Consensus 167 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t 246 (364)
T 3ljn_A 167 TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTV 246 (364)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCC
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence 99999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 003425 738 DTADK 742 (821)
Q Consensus 738 ~~~~~ 742 (821)
+....
T Consensus 247 pL~~A 251 (364)
T 3ljn_A 247 PLYLS 251 (364)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87633
No 35
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=5e-33 Score=302.29 Aligned_cols=211 Identities=19% Similarity=0.195 Sum_probs=195.2
Q ss_pred ccchh-hhHhhhHHHHhhcCCHHHHHHHH--------HcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q 003425 532 ISKHE-AELALKVNSAAYHGDLYQLEGLI--------RAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD 602 (821)
Q Consensus 532 ~~~~~-~~~~~~L~~A~~~g~~~~v~~Ll--------~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~ 602 (821)
++..+ ..|.||||+||..|+.++++.|+ +.|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|
T Consensus 117 ~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~ 196 (373)
T 2fo1_E 117 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN 196 (373)
T ss_dssp TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC
T ss_pred ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccC
Confidence 44455 68999999999999998888776 7899999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHcCChHHHHHHHhcC---CCCCc--ccccchhhHHHhcC---CHHHHHHHHHCCCCCCC--------CC
Q 003425 603 NFGNTPLLEAIKYGNDGAASLLVKEG---ASLNV--EEAGSFLCTAVARG---DSDLLKRVLSNGIDPNT--------RD 666 (821)
Q Consensus 603 ~~g~tpL~~A~~~~~~~~v~~Ll~~~---~~~~~--~~~~t~l~~A~~~~---~~~~v~~Ll~~g~~~~~--------~d 666 (821)
..|.||||+|+..|+.+++++|++++ ++++. .+|.||||+|+..+ +.+++++|+++|++++. .|
T Consensus 197 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d 276 (373)
T 2fo1_E 197 KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEK 276 (373)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSS
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCccc
Confidence 99999999999999999999999987 66665 45899999999998 89999999999999986 67
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCccccc
Q 003425 667 YDLRTPLHVAASEGLYLMAKLLVEAG-ASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADK 742 (821)
Q Consensus 667 ~~g~T~Lh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~ 742 (821)
..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|+++|++.+..+..|.++...+
T Consensus 277 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A 353 (373)
T 2fo1_E 277 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLA 353 (373)
T ss_dssp CCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHH
T ss_pred ccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHH
Confidence 78999999999999999999999886 99999999999999999999999999999999999999998888876544
No 36
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.1e-32 Score=287.85 Aligned_cols=211 Identities=24% Similarity=0.228 Sum_probs=176.0
Q ss_pred hHHHHHHHhcCCcchhhhhhhccccccc-ccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 003425 504 GRKVLTNLLQGKESDLRLKQLQSDITFH-ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASR 582 (821)
Q Consensus 504 ~~~~l~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~ 582 (821)
+...++.+......+.....++.+.+.. ++..+..|.||||+||..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus 9 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~ 88 (282)
T 1oy3_D 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV 88 (282)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTT
T ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 3445666666666555555555444322 566788899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCC-----------------------------------------------CCCCCCCCCcHHHHHHHc
Q 003425 583 GYEEIMTFLIQKGVD-----------------------------------------------INLKDNFGNTPLLEAIKY 615 (821)
Q Consensus 583 g~~~~v~~Ll~~g~~-----------------------------------------------~~~~~~~g~tpL~~A~~~ 615 (821)
|+.+++++|+++|++ ++.++..|.||||+|+..
T Consensus 89 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~ 168 (282)
T 1oy3_D 89 RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH 168 (282)
T ss_dssp TCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHT
T ss_pred CCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHc
Confidence 999999999998765 677888999999999999
Q ss_pred CChHHHHHHHhcCCCCCccc---ccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcC
Q 003425 616 GNDGAASLLVKEGASLNVEE---AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG 692 (821)
Q Consensus 616 ~~~~~v~~Ll~~~~~~~~~~---~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g 692 (821)
|+.+++++|+++|++++..+ |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 169 g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g 248 (282)
T 1oy3_D 169 KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG 248 (282)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcC
Confidence 99999999999999998764 889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHcCC
Q 003425 693 ASVFPKDRWGNTPLDEGRMCGN 714 (821)
Q Consensus 693 a~~~~~d~~g~t~l~~A~~~~~ 714 (821)
++++.+|..|.||+++|.....
T Consensus 249 a~~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 249 APEPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp CCCCCCC---------------
T ss_pred CCcCcCCCcccccccccCCccc
Confidence 9999999999999999987664
No 37
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=7e-32 Score=274.41 Aligned_cols=193 Identities=24% Similarity=0.280 Sum_probs=97.1
Q ss_pred hhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 003425 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAI 613 (821)
Q Consensus 535 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~ 613 (821)
.+..|.||||.|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus 38 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 117 (240)
T 3eu9_A 38 PDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAA 117 (240)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 33445555555555555555555555555444332 22555555555555555555555555555555555555555555
Q ss_pred HcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCC-HHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHcCcHHHHHHHH
Q 003425 614 KYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGD-SDLLKRVLSNGIDPNTRDY-DLRTPLHVAASEGLYLMAKLLV 689 (821)
Q Consensus 614 ~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~-~~~v~~Ll~~g~~~~~~d~-~g~T~Lh~A~~~g~~~~v~~Ll 689 (821)
..|+.+++++|+++|++++.. .|.||||.|+..++ .+++++|++.|++++..+. .|.||||+|+..|+.+++++|+
T Consensus 118 ~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 197 (240)
T 3eu9_A 118 QFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL 197 (240)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred HcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHH
Confidence 555555555555555444432 24455555553333 4455555555555555443 4555555555555555555555
Q ss_pred HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Q 003425 690 EAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKST 727 (821)
Q Consensus 690 ~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~ 727 (821)
++|++++.+|..|.||+++|+..|+.+++++|++++++
T Consensus 198 ~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 198 EAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp HHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 55555555555555555555555555555555555444
No 38
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=5.6e-32 Score=275.13 Aligned_cols=212 Identities=24% Similarity=0.249 Sum_probs=198.7
Q ss_pred ccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHH
Q 003425 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD-NFGNTPLL 610 (821)
Q Consensus 532 ~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~tpL~ 610 (821)
++..|..+.++|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||
T Consensus 2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~ 81 (240)
T 3eu9_A 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLH 81 (240)
T ss_dssp CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHH
T ss_pred ccccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhH
Confidence 45667889999999999999999999999999999999999999999999999999999999999988665 44999999
Q ss_pred HHHHcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCc-HHHHHH
Q 003425 611 EAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGL-YLMAKL 687 (821)
Q Consensus 611 ~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~-~~~v~~ 687 (821)
+|+..|+.+++++|+++|++++.. .|.||||.|+..|+.+++++|+++|++++..|..|.||||+|+..++ .+++++
T Consensus 82 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~ 161 (240)
T 3eu9_A 82 WATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRL 161 (240)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHH
Confidence 999999999999999999998875 47899999999999999999999999999999999999999997776 899999
Q ss_pred HHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCcccccc
Q 003425 688 LVEAGASVFPKDR-WGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKR 743 (821)
Q Consensus 688 Ll~~ga~~~~~d~-~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~~ 743 (821)
|++.|++++..+. .|.||||+|+..|+.+++++|+++|+++...+..|.++...+.
T Consensus 162 L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 218 (240)
T 3eu9_A 162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAK 218 (240)
T ss_dssp HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHH
T ss_pred HHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 9999999999997 9999999999999999999999999999999999998876443
No 39
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.98 E-value=5.1e-32 Score=273.23 Aligned_cols=214 Identities=22% Similarity=0.166 Sum_probs=187.7
Q ss_pred HHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcC--CCCCC-CCCCCCcHHHHHHHcC
Q 003425 507 VLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG--ADPNR-TDYDGRSPLHLAASRG 583 (821)
Q Consensus 507 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g--~~~n~-~d~~g~t~L~~A~~~g 583 (821)
.+..+......+.....++.+... ....+..|.||||.|+..|+.+++++|++.| ++++. .+..|.||||+|+..|
T Consensus 5 ~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~ 83 (228)
T 2dzn_A 5 PLHQACMENEFFKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG 83 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCGGG-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHC
T ss_pred HHHHHHHhCCHHHHHHHHhcCccc-cccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcC
Confidence 345555555555444455444332 2346788999999999999999999999999 55555 7899999999999999
Q ss_pred CHHHHHHHHHcC--CCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHCC
Q 003425 584 YEEIMTFLIQKG--VDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNG 659 (821)
Q Consensus 584 ~~~~v~~Ll~~g--~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g 659 (821)
+.+++++|+++| ++++..+..|.||||+|+..|+.+++++|+++|++++.. .|.||||+|+..|+.+++++|+++|
T Consensus 84 ~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 163 (228)
T 2dzn_A 84 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163 (228)
T ss_dssp CHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred CHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 999999999998 899999999999999999999999999999999999876 4889999999999999999999999
Q ss_pred -CCCCCCCCCCCcHHHHHHHcCcHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 003425 660 -IDPNTRDYDLRTPLHVAASEGLYLMAKLLV-EAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDA 724 (821)
Q Consensus 660 -~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll-~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~ 724 (821)
++++.+|..|+||||+|+..|+.+++++|+ ++|+|++.+|..|+||+|+|+.. +++++|+++
T Consensus 164 ~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~~ 227 (228)
T 2dzn_A 164 KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN 227 (228)
T ss_dssp CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred cccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence 999999999999999999999999999999 89999999999999999999765 566777653
No 40
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.98 E-value=2.6e-31 Score=285.20 Aligned_cols=224 Identities=24% Similarity=0.286 Sum_probs=182.0
Q ss_pred HHHHHHHhcCCcchhhhhhhcccccccccchh-hhHhhhHHHHhhcCCHHHHHHHHHcCCCCC-----------------
Q 003425 505 RKVLTNLLQGKESDLRLKQLQSDITFHISKHE-AELALKVNSAAYHGDLYQLEGLIRAGADPN----------------- 566 (821)
Q Consensus 505 ~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n----------------- 566 (821)
...|..+....+.+....+++++.+.+ ..+ ..|.||||+||..|+.++|++|+++|++++
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn--~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 103 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVN--FQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAG 103 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTT--CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCC--ccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcc
Confidence 455667777777777777777665443 333 347899999999999999999999887654
Q ss_pred ----------------CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC----------CCCCCcHHHHHHHcCChHH
Q 003425 567 ----------------RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK----------DNFGNTPLLEAIKYGNDGA 620 (821)
Q Consensus 567 ----------------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----------~~~g~tpL~~A~~~~~~~~ 620 (821)
..|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..|+.++
T Consensus 104 ~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~ 183 (337)
T 4g8k_A 104 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 183 (337)
T ss_dssp CHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHH
T ss_pred cchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHH
Confidence 45667888999999999999999999988887654 3458899999999999999
Q ss_pred HHHHHh-cCCCCCccc--ccchhhHHHhcCC----HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHc-C
Q 003425 621 ASLLVK-EGASLNVEE--AGSFLCTAVARGD----SDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEA-G 692 (821)
Q Consensus 621 v~~Ll~-~~~~~~~~~--~~t~l~~A~~~~~----~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~-g 692 (821)
+++|++ .|++++..+ |.++++.++..+. ..++++|+++|+++|.+|..|+||||+|+..|+.++++.|++. |
T Consensus 184 v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~ 263 (337)
T 4g8k_A 184 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH 263 (337)
T ss_dssp HHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTT
T ss_pred HHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcC
Confidence 999885 588887654 7788887766544 3578888899999999999999999999999999999999885 7
Q ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccc
Q 003425 693 ASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLL 730 (821)
Q Consensus 693 a~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~ 730 (821)
++++.+|..|+||||+|+..|+.+++++|+++||+++.
T Consensus 264 ~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~ 301 (337)
T 4g8k_A 264 IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 301 (337)
T ss_dssp CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT
T ss_pred CcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 89999999999999999999999999999999988754
No 41
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.97 E-value=2.4e-32 Score=285.09 Aligned_cols=219 Identities=16% Similarity=0.175 Sum_probs=198.9
Q ss_pred chHHHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 003425 503 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASR 582 (821)
Q Consensus 503 ~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~ 582 (821)
.+...+..+......+.....++++.+.+.. +|.||||.||..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus 30 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~ 105 (285)
T 3kea_A 30 HGHSASYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDS 105 (285)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC----TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHc
Confidence 3456677777777777666777766554433 489999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCC-CcHHHHHHHcCChHHHHHHHhcCCCCCcc-cccchhhHHHhcCCHHHHHHHHHCCC
Q 003425 583 GYEEIMTFLIQKGVDINLKDNFG-NTPLLEAIKYGNDGAASLLVKEGASLNVE-EAGSFLCTAVARGDSDLLKRVLSNGI 660 (821)
Q Consensus 583 g~~~~v~~Ll~~g~~~~~~~~~g-~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~t~l~~A~~~~~~~~v~~Ll~~g~ 660 (821)
|+.+++++|+++|++++.++..| .||||+|+..|+.+++++|+++|++.... .|.||||.|+..|+.+++++|+++|+
T Consensus 106 g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga 185 (285)
T 3kea_A 106 GNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMT 185 (285)
T ss_dssp TCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCC
Confidence 99999999999999999999999 89999999999999999999999988665 79999999999999999999999999
Q ss_pred CCCCCCCCCCcH-HHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccC
Q 003425 661 DPNTRDYDLRTP-LHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEF 732 (821)
Q Consensus 661 ~~~~~d~~g~T~-Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~ 732 (821)
+++.+|..|.|| ||+|+..|+.+++++|+++|++++.+|. .|+..|+.+++++|+++|++.....
T Consensus 186 d~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~~~~~ 251 (285)
T 3kea_A 186 STNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVEYKSDS 251 (285)
T ss_dssp HTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHHHTTCT
T ss_pred CCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCCCCCcc
Confidence 999999999998 9999999999999999999999999883 5678999999999999999876443
No 42
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.97 E-value=4.2e-31 Score=285.24 Aligned_cols=211 Identities=26% Similarity=0.297 Sum_probs=196.6
Q ss_pred ccchhhhHhhhHHHHhhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 003425 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLL 610 (821)
Q Consensus 532 ~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~ 610 (821)
....+..+.++||.||..|+.+.++.|+.. +.+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus 17 ~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 96 (351)
T 3utm_A 17 AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLH 96 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred eeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHH
Confidence 345667889999999999999999999976 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHhcCCCCCccc--ccchhhHHHhcCCHHHHHHHHHCCCCCCCCC----------------------
Q 003425 611 EAIKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRD---------------------- 666 (821)
Q Consensus 611 ~A~~~~~~~~v~~Ll~~~~~~~~~~--~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d---------------------- 666 (821)
+|+..|+.+++++|+++|++++..+ |.||||+|+..|+.+++++|+++|++++..+
T Consensus 97 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~ 176 (351)
T 3utm_A 97 NACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYE 176 (351)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhh
Confidence 9999999999999999999998764 7899999999999999999999999987654
Q ss_pred --------------------------------CCCCcHHHHHHHc---CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 003425 667 --------------------------------YDLRTPLHVAASE---GLYLMAKLLVEAGASVFPKDRWGNTPLDEGRM 711 (821)
Q Consensus 667 --------------------------------~~g~T~Lh~A~~~---g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~ 711 (821)
..|.||||+|+.. ++.+++++|+++|++++.+|..|.||||+|+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 256 (351)
T 3utm_A 177 FKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAE 256 (351)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred hcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHH
Confidence 4577999999998 66899999999999999999999999999999
Q ss_pred cCCHHHHHHHHhccccccccCCCCCCccccc
Q 003425 712 CGNKNLIKLLEDAKSTQLLEFPHGFQDTADK 742 (821)
Q Consensus 712 ~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~ 742 (821)
.|+.+++++|+++|++++..+..|.++.+..
T Consensus 257 ~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A 287 (351)
T 3utm_A 257 RAHNDVMEVLHKHGAKMNALDSLGQTALHRA 287 (351)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence 9999999999999999999999998887643
No 43
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.97 E-value=4.8e-31 Score=283.07 Aligned_cols=209 Identities=26% Similarity=0.288 Sum_probs=188.4
Q ss_pred chhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCC-------------
Q 003425 534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDY-DGRSPLHLAASRGYEEIMTFLIQKGVDIN------------- 599 (821)
Q Consensus 534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------------- 599 (821)
..+.+|.|+||.||..|++++|+.|+++|+|+|.++. .|+||||+||..|+.+++++|+++|++++
T Consensus 20 ~~~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~ 99 (337)
T 4g8k_A 20 RAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILA 99 (337)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHH
Confidence 3456789999999999999999999999999998875 59999999999999999999999988654
Q ss_pred --------------------CCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc------------cccchhhHHHhcC
Q 003425 600 --------------------LKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE------------EAGSFLCTAVARG 647 (821)
Q Consensus 600 --------------------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~------------~~~t~l~~A~~~~ 647 (821)
..|..|.||||+|+..|+.+++++|+++|++++.. .|.||||.|+..|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g 179 (337)
T 4g8k_A 100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 179 (337)
T ss_dssp HHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred HhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCC
Confidence 45678999999999999999999999999988642 3789999999999
Q ss_pred CHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcCc----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 003425 648 DSDLLKRVLS-NGIDPNTRDYDLRTPLHVAASEGL----YLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 722 (821)
Q Consensus 648 ~~~~v~~Ll~-~g~~~~~~d~~g~T~Lh~A~~~g~----~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll 722 (821)
+.+++++|++ .|+++|.+|..|.||||.++..+. .+++++|+++|+++|.+|..|+||||+|+..|+.++++.|+
T Consensus 180 ~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll 259 (337)
T 4g8k_A 180 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 259 (337)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHH
Confidence 9999999996 699999999999999999886553 46889999999999999999999999999999999999999
Q ss_pred hc-cccccccCCCCCCccccc
Q 003425 723 DA-KSTQLLEFPHGFQDTADK 742 (821)
Q Consensus 723 ~~-~a~~~~~~~~~~~~~~~~ 742 (821)
+. |++.+..+..|.++.+.+
T Consensus 260 ~~~~~~vn~~d~~G~TpL~~A 280 (337)
T 4g8k_A 260 EQEHIEINDTDSDGKTALLLA 280 (337)
T ss_dssp TSTTCCTTCBCTTSCBHHHHH
T ss_pred HhcCCcccCcCCCCCCHHHHH
Confidence 85 889999999999887644
No 44
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.97 E-value=9.7e-32 Score=270.19 Aligned_cols=193 Identities=23% Similarity=0.248 Sum_probs=179.1
Q ss_pred cCCHHHHHHHHHcCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhc
Q 003425 549 HGDLYQLEGLIRAGADPNRT-DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKE 627 (821)
Q Consensus 549 ~g~~~~v~~Ll~~g~~~n~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ 627 (821)
.|+.+++++|++.|++++.. |..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus 1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 80 (223)
T 2f8y_A 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 80 (223)
T ss_dssp ----CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred CCcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 37788999999999998875 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCc--ccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCC
Q 003425 628 GA-SLNV--EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNT 704 (821)
Q Consensus 628 ~~-~~~~--~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t 704 (821)
++ +++. ..|.||||.|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus 81 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 160 (223)
T 2f8y_A 81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREET 160 (223)
T ss_dssp TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcC
Confidence 86 5555 45889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhccccccccCCCCCCcccc
Q 003425 705 PLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTAD 741 (821)
Q Consensus 705 ~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~ 741 (821)
|||+|+..|+.+++++|+++|+++...+..|.++...
T Consensus 161 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~ 197 (223)
T 2f8y_A 161 PLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 197 (223)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHH
Confidence 9999999999999999999999999888888776553
No 45
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=2e-32 Score=282.36 Aligned_cols=194 Identities=19% Similarity=0.144 Sum_probs=175.8
Q ss_pred hHhhhHHHHhhcCCHHHHHHHHH----cCCCCCCCC----CCCCcHHHHHH---HcCCHHHHHHHHHcCCC---------
Q 003425 538 ELALKVNSAAYHGDLYQLEGLIR----AGADPNRTD----YDGRSPLHLAA---SRGYEEIMTFLIQKGVD--------- 597 (821)
Q Consensus 538 ~~~~~L~~A~~~g~~~~v~~Ll~----~g~~~n~~d----~~g~t~L~~A~---~~g~~~~v~~Ll~~g~~--------- 597 (821)
.+.++||.||..|+.+.++.|++ .|++++..+ ..|.||||+|+ ..|+.+++++|++.|++
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 83 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN 83 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence 46799999999999996555554 899998765 77999999999 77999999999998754
Q ss_pred --CCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCccc----------------ccchhhHHHhcCCHHHHHHHHH--
Q 003425 598 --INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE----------------AGSFLCTAVARGDSDLLKRVLS-- 657 (821)
Q Consensus 598 --~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~----------------~~t~l~~A~~~~~~~~v~~Ll~-- 657 (821)
.+..|..|.||||+|+..|+.+++++|+++|++++..+ |.||||+|+..|+.+++++|++
T Consensus 84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 163 (260)
T 3jxi_A 84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG 163 (260)
T ss_dssp CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 44455689999999999999999999999999998865 8899999999999999999999
Q ss_pred -CCCCCCCCCCCCCcHHHHHHHcCc---------HHHHHHHHHcCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHH
Q 003425 658 -NGIDPNTRDYDLRTPLHVAASEGL---------YLMAKLLVEAGASV-------FPKDRWGNTPLDEGRMCGNKNLIKL 720 (821)
Q Consensus 658 -~g~~~~~~d~~g~T~Lh~A~~~g~---------~~~v~~Ll~~ga~~-------~~~d~~g~t~l~~A~~~~~~~i~~~ 720 (821)
+|++++.+|..|+||||+|+..|+ .+++++|+++|+++ +.+|..|+||||+|+..|+.+++++
T Consensus 164 ~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~ 243 (260)
T 3jxi_A 164 HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQH 243 (260)
T ss_dssp SCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred ccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHH
Confidence 999999999999999999999887 79999999999999 6799999999999999999999999
Q ss_pred HHhcccccccc
Q 003425 721 LEDAKSTQLLE 731 (821)
Q Consensus 721 Ll~~~a~~~~~ 731 (821)
|+++|+++...
T Consensus 244 Ll~~g~~~~~~ 254 (260)
T 3jxi_A 244 IIRREIADAAA 254 (260)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHhCCCcccc
Confidence 99999887544
No 46
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.97 E-value=1.5e-31 Score=281.97 Aligned_cols=216 Identities=26% Similarity=0.339 Sum_probs=187.6
Q ss_pred HHHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 003425 505 RKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY 584 (821)
Q Consensus 505 ~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~ 584 (821)
...+..++..+..+.....++++.+ ++..+..|.||||.||..|+.+++++|++.|+++|..|..|.||||+|+..|+
T Consensus 41 ~t~l~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~ 118 (299)
T 1s70_B 41 GAVFLAACSSGDTEEVLRLLERGAD--INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY 118 (299)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHCCC--TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred ccHHHHHHHcCCHHHHHHHHHcCCC--CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Confidence 3445555655555555555555543 45667889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhc-CCCCCc----------------------------cc
Q 003425 585 EEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKE-GASLNV----------------------------EE 635 (821)
Q Consensus 585 ~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-~~~~~~----------------------------~~ 635 (821)
.+++++|+++|++++..|..|.||||+|+..++.++++.++.. +.+++. ..
T Consensus 119 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 198 (299)
T 1s70_B 119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS 198 (299)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTT
T ss_pred HHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCC
Confidence 9999999999999999999999999999999999999887753 444332 35
Q ss_pred ccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Q 003425 636 AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNK 715 (821)
Q Consensus 636 ~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~ 715 (821)
|.||||.|+..|+.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|+|++.+|..|+||+|+|+.....
T Consensus 199 g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~ 278 (299)
T 1s70_B 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILG 278 (299)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGGH
T ss_pred CCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999875544
Q ss_pred HHHHHHH
Q 003425 716 NLIKLLE 722 (821)
Q Consensus 716 ~i~~~Ll 722 (821)
.+.+++.
T Consensus 279 ~l~~l~~ 285 (299)
T 1s70_B 279 YLEELQK 285 (299)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 47
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.97 E-value=6.8e-30 Score=251.07 Aligned_cols=190 Identities=21% Similarity=0.472 Sum_probs=179.5
Q ss_pred CchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc-cccHHHHHhhCcHHHHHHHHHhhhhhhccccccccCCC
Q 003425 321 GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES-SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCS 399 (821)
Q Consensus 321 ~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~~y~~~~~~~-~~~~~~~l~~lp~~L~~~i~~~~~~~~l~~~~~f~~~~ 399 (821)
+.+..+|+++++.+++||+++++|..||.||++||+|.|++ ..+++++++.||++||.++..+.+.++++++|+|.+++
T Consensus 4 ~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~~l~ 83 (198)
T 2ptm_A 4 DSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFVGAD 83 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchhcCC
Confidence 45678999999999999999999999999999999999975 47889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEE
Q 003425 400 SEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQV 479 (821)
Q Consensus 400 ~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a 479 (821)
++++..++..++...|.||++|+++|+.++.+|||.+|.|+++. .+|+ .+..+++|++|||.+++.+.|++++++|
T Consensus 84 ~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~--~~g~--~~~~l~~G~~fGe~~~~~~~~~~~~~~a 159 (198)
T 2ptm_A 84 SNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM--SDGV--IATSLSDGSYFGEICLLTRERRVASVKC 159 (198)
T ss_dssp HHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC--TTSC--EEEEECTTCEESCHHHHHSSCCSSEEEE
T ss_pred HHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe--cCCe--EEEEecCCCEechHHHcCCCccceEEEE
Confidence 99999999999999999999999999999999999999999986 4554 7889999999999999999999999999
Q ss_pred ecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425 480 CELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (821)
Q Consensus 480 ~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~ 514 (821)
.++|+++.|++++|.++++.+|++...++..+..+
T Consensus 160 ~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~r 194 (198)
T 2ptm_A 160 ETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRR 194 (198)
T ss_dssp SSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTC
T ss_pred eeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 99999999999999999999999999988877654
No 48
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=9.7e-31 Score=271.45 Aligned_cols=190 Identities=21% Similarity=0.253 Sum_probs=179.8
Q ss_pred hhhHhhhHHHHhhcCCHHHHHHHHHcCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHH
Q 003425 536 EAELALKVNSAAYHGDLYQLEGLIRAGAD--PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV-DINLKDNFGNTPLLEA 612 (821)
Q Consensus 536 ~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~--~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~tpL~~A 612 (821)
+....+++|.|+..|+.+.++.+++.+.+ +|..|.+|.||||+||..|+.+++++|++.|+ +++..|..|.||||+|
T Consensus 73 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a 152 (276)
T 4hbd_A 73 RLACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLT 152 (276)
T ss_dssp HHHHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHG
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHH
Confidence 44567889999999999999999988776 89999999999999999999999999999998 9999999999999999
Q ss_pred H-----HcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHH
Q 003425 613 I-----KYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMA 685 (821)
Q Consensus 613 ~-----~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v 685 (821)
+ ..++.++++.|++.|.+.+.. .|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++
T Consensus 153 ~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv 232 (276)
T 4hbd_A 153 ALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIA 232 (276)
T ss_dssp GGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHH
Confidence 9 668899999999999887764 489999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcc
Q 003425 686 KLLVE-AGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAK 725 (821)
Q Consensus 686 ~~Ll~-~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~ 725 (821)
++|++ .|+|++.+|..|+||||+|+..|+.+++++|++++
T Consensus 233 ~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 233 GLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 99999 89999999999999999999999999999999875
No 49
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=8.1e-30 Score=253.49 Aligned_cols=193 Identities=20% Similarity=0.425 Sum_probs=174.1
Q ss_pred HHHhc-CchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc--cccHHHHHhhCcHHHHHHHHHhhhhhhcccc
Q 003425 316 ALIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES--SYTEASVLQDIPISIRAKISQTLYLPYIEKV 392 (821)
Q Consensus 316 ~~~~~-~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~~y~~~~~~~--~~~~~~~l~~lp~~L~~~i~~~~~~~~l~~~ 392 (821)
+++++ +.+..+|+++++.+++||+++++|.+||.||++||+|.|.. +.+++++++.||++||.++..+++..++ ++
T Consensus 2 ~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~~ 80 (212)
T 3ukn_A 2 AMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-QL 80 (212)
T ss_dssp ----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-GS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-hc
Confidence 34555 66778999999999999999999999999999999999964 4678999999999999999999998887 89
Q ss_pred ccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccC-
Q 003425 393 PLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI- 471 (821)
Q Consensus 393 ~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~- 471 (821)
|+|++++++++..++..++...|+||++|+++|+.++.+|||.+|.|+++. +| .++..+++|++|||.+++.+.
T Consensus 81 ~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~---~~--~~~~~l~~G~~fGe~~~~~~~~ 155 (212)
T 3ukn_A 81 PLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK---DN--TVLAILGKGDLIGSDSLTKEQV 155 (212)
T ss_dssp GGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES---SS--CEEEEECTTCEEECSCCSSSSC
T ss_pred HHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE---CC--eEEEEecCCCCcCcHHhccCCC
Confidence 999999999999999999999999999999999999999999999999986 33 678999999999999999988
Q ss_pred -CcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425 472 -PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (821)
Q Consensus 472 -~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~ 514 (821)
+++++++|.++|+++.|++++|.++++.+|++...+++.+...
T Consensus 156 ~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~ 199 (212)
T 3ukn_A 156 IKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHD 199 (212)
T ss_dssp CBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998887653
No 50
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=1.3e-29 Score=248.18 Aligned_cols=160 Identities=29% Similarity=0.382 Sum_probs=112.5
Q ss_pred CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCccc--ccchhhHH
Q 003425 566 NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE--AGSFLCTA 643 (821)
Q Consensus 566 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~t~l~~A 643 (821)
|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+ |.||||+|
T Consensus 29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 108 (192)
T 2rfm_A 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS 108 (192)
T ss_dssp TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence 3444445555555555555555555555555555555555555555555555555555555554444332 44555555
Q ss_pred HhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q 003425 644 VARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLED 723 (821)
Q Consensus 644 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~ 723 (821)
+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+|+|+..|+.+++++|++
T Consensus 109 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 188 (192)
T 2rfm_A 109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188 (192)
T ss_dssp HHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHh
Confidence 55566666666677777888899999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 003425 724 AK 725 (821)
Q Consensus 724 ~~ 725 (821)
+|
T Consensus 189 ~~ 190 (192)
T 2rfm_A 189 VR 190 (192)
T ss_dssp HH
T ss_pred cc
Confidence 76
No 51
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=3.5e-29 Score=239.00 Aligned_cols=161 Identities=27% Similarity=0.332 Sum_probs=131.8
Q ss_pred hHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 003425 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 617 (821)
Q Consensus 538 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~ 617 (821)
.|.||||.||..|+.++++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY 81 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 46677777777777777777777777777777777777777777777777777777777777777777777777776666
Q ss_pred hHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCC
Q 003425 618 DGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFP 697 (821)
Q Consensus 618 ~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~ 697 (821)
.+++++|+ ++|++++.+|..|.||||+|+..|+.+++++|+++|++++.
T Consensus 82 ~~~v~~Ll-------------------------------~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 130 (167)
T 3v31_A 82 TDIVKMLL-------------------------------DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 130 (167)
T ss_dssp HHHHHHHH-------------------------------HHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHH-------------------------------HCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 55555554 45567788888999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhcccccc
Q 003425 698 KDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQL 729 (821)
Q Consensus 698 ~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~ 729 (821)
+|..|.||+|+|+..|+.+++++|++++++..
T Consensus 131 ~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~ 162 (167)
T 3v31_A 131 ETDSGYNSMDLAVALGYRSVQQVIESHLLKLL 162 (167)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987754
No 52
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.96 E-value=4.2e-29 Score=246.20 Aligned_cols=188 Identities=23% Similarity=0.450 Sum_probs=176.2
Q ss_pred CchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc-cccHHHHHhhCcHHHHHHHHHhhhhhhccccccccCCC
Q 003425 321 GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES-SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCS 399 (821)
Q Consensus 321 ~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~~y~~~~~~~-~~~~~~~l~~lp~~L~~~i~~~~~~~~l~~~~~f~~~~ 399 (821)
+.+..+|+++++.+++||+++++|.+||.||++|++|.|+. ..+++++++.||++||.++..+.+.++++++|+|.+++
T Consensus 5 ~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f~~l~ 84 (202)
T 3bpz_A 5 DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLFANAD 84 (202)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHHHTSC
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCchhcCC
Confidence 56678999999999999999999999999999999999974 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEE
Q 003425 400 SEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQV 479 (821)
Q Consensus 400 ~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a 479 (821)
++++..|+..++...|+||++|+++|+.++.+|||.+|.|+++. .+|++. .+++|++|||.+++.+.+++++++|
T Consensus 85 ~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~--~~g~~~---~l~~G~~fGe~~~~~~~~~~~~v~a 159 (202)
T 3bpz_A 85 PNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT--KGNKEM---KLSDGSYFGEICLLTRGRRTASVRA 159 (202)
T ss_dssp HHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC--TTSCCE---EEETTCEECHHHHHHCSBCSSEEEE
T ss_pred HHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE--CCCeEE---EEcCCCEeccHHHhcCCCcccEEEE
Confidence 99999999999999999999999999999999999999999975 455543 5899999999999999999999999
Q ss_pred ecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425 480 CELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (821)
Q Consensus 480 ~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~ 513 (821)
.++|+++.|++++|.++++.+|++...++..+..
T Consensus 160 ~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~ 193 (202)
T 3bpz_A 160 DTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAID 193 (202)
T ss_dssp SSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHH
T ss_pred eeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9999999999999999999999999988876654
No 53
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=7.3e-29 Score=237.22 Aligned_cols=161 Identities=37% Similarity=0.524 Sum_probs=137.3
Q ss_pred chhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 003425 534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAI 613 (821)
Q Consensus 534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~ 613 (821)
.....+.++|+.||..|+.+++++|++.|+++|..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+
T Consensus 9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 88 (169)
T 2y1l_E 9 HHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA 88 (169)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred cCCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence 34456788999999999999999999999999999999999999999999999999999999999988888888888888
Q ss_pred HcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Q 003425 614 KYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGA 693 (821)
Q Consensus 614 ~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga 693 (821)
..|+.+++++|++ +|++++..|..|.||||+|+..|+.+++++|+++|+
T Consensus 89 ~~~~~~~~~~Ll~-------------------------------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 137 (169)
T 2y1l_E 89 LFGHLEIVEVLLK-------------------------------NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137 (169)
T ss_dssp HTTCHHHHHHHHH-------------------------------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHH-------------------------------cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 7777666665555 455677788889999999999999999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcc
Q 003425 694 SVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAK 725 (821)
Q Consensus 694 ~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~ 725 (821)
+++.+|..|.||+|+|+..|+.+++++|++.|
T Consensus 138 ~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 99999999999999999999999999998876
No 54
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=2e-29 Score=241.95 Aligned_cols=168 Identities=24% Similarity=0.297 Sum_probs=126.6
Q ss_pred HhhhHHHHhhcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 003425 539 LALKVNSAAYHGDLYQLEGLIRAGAD-PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 617 (821)
Q Consensus 539 ~~~~L~~A~~~g~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~ 617 (821)
+.+|||.||..|+.+.++.|++.|.+ ++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence 45789999999999999999988877 78888889999999999999999999999999999888888888888888777
Q ss_pred hHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCC
Q 003425 618 DGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFP 697 (821)
Q Consensus 618 ~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~ 697 (821)
.+++++|+++| ++++.+|..|.||||+|+..|+.+++++|+++|++++.
T Consensus 82 ~~~v~~Ll~~g-------------------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 130 (172)
T 3v30_A 82 TDIVGLLLERD-------------------------------VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT 130 (172)
T ss_dssp HHHHHHHHTTT-------------------------------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHcC-------------------------------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence 77777666655 45566666677777777777777777777777777777
Q ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCC
Q 003425 698 KDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQ 737 (821)
Q Consensus 698 ~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~ 737 (821)
+|..|.||||+|+..|+.+++++|+++|++....+..+.+
T Consensus 131 ~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 170 (172)
T 3v30_A 131 EADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170 (172)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC------
T ss_pred cCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCC
Confidence 7777777777777777777777777777766655554443
No 55
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=3.9e-29 Score=237.41 Aligned_cols=158 Identities=29% Similarity=0.385 Sum_probs=131.9
Q ss_pred hHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 003425 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 617 (821)
Q Consensus 538 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~ 617 (821)
...+|||.|+..|+.++++.|++.|++++..|..|.||||+|+. |+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 82 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF 82 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 45688888888888888888888888888888888888888888 88888888888888888888888888888877766
Q ss_pred hHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CC
Q 003425 618 DGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS-VF 696 (821)
Q Consensus 618 ~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~-~~ 696 (821)
.+++++|++ +|++++.+|..|.||||+|+..|+.+++++|+++|++ ++
T Consensus 83 ~~~v~~Ll~-------------------------------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 131 (162)
T 1ihb_A 83 LDTLQTLLE-------------------------------FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131 (162)
T ss_dssp HHHHHHHHH-------------------------------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT
T ss_pred HHHHHHHHH-------------------------------cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCC
Confidence 666555554 5566778888899999999999999999999999988 58
Q ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Q 003425 697 PKDRWGNTPLDEGRMCGNKNLIKLLEDAKST 727 (821)
Q Consensus 697 ~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~ 727 (821)
.+|..|.||||+|+..|+.+++++|+++||+
T Consensus 132 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 132 HRNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred CcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 8999999999999999999999999999875
No 56
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.96 E-value=4e-30 Score=260.85 Aligned_cols=208 Identities=22% Similarity=0.234 Sum_probs=179.0
Q ss_pred HHHHHHhcCCcchhhhhhhccccc--ccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 003425 506 KVLTNLLQGKESDLRLKQLQSDIT--FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG 583 (821)
Q Consensus 506 ~~l~~~l~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g 583 (821)
..++.+......+.....++.... ..++..+..|.||||.||..|+.+++++|++.|++++.+|..|.||||+|+..|
T Consensus 10 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 89 (236)
T 1ikn_D 10 SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQG 89 (236)
T ss_dssp CTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHT
T ss_pred chhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 345555555554444444443322 246677888999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCC------CCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc---cccchhhHHHhcCCHHHHHH
Q 003425 584 YEEIMTFLIQKGVD------INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE---EAGSFLCTAVARGDSDLLKR 654 (821)
Q Consensus 584 ~~~~v~~Ll~~g~~------~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~---~~~t~l~~A~~~~~~~~v~~ 654 (821)
+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|+++|++++.. .|.||||+|+..|+.+++++
T Consensus 90 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~ 169 (236)
T 1ikn_D 90 CLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 169 (236)
T ss_dssp CHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 99999999999876 4677889999999999999999999999999999875 57899999999999999999
Q ss_pred HHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHcC
Q 003425 655 VLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVF--PKDRWGNTPLDEGRMCG 713 (821)
Q Consensus 655 Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~--~~d~~g~t~l~~A~~~~ 713 (821)
|+++|++++.+|..|.||||+|+..|+.+++++|+++|++.. .++..|.||.+.+....
T Consensus 170 Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~ 230 (236)
T 1ikn_D 170 LLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFT 230 (236)
T ss_dssp HHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC----
T ss_pred HHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhcccc
Confidence 999999999999999999999999999999999999999876 78899999987665443
No 57
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=1.1e-28 Score=236.92 Aligned_cols=140 Identities=23% Similarity=0.265 Sum_probs=115.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHH
Q 003425 572 GRSPLHLAASRGYEEIMTFLIQKGVD-INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSD 650 (821)
Q Consensus 572 g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~ 650 (821)
+.||||.|+..|+.++++.|++.|.+ ++.+|..|.||||+|+..|+.+++++|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-------------------------- 55 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFL-------------------------- 55 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHH--------------------------
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHH--------------------------
Confidence 34677777777777777777776665 666666677777666666655555555
Q ss_pred HHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccc
Q 003425 651 LLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLL 730 (821)
Q Consensus 651 ~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~ 730 (821)
+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++...
T Consensus 56 -----l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 130 (172)
T 3v30_A 56 -----LEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT 130 (172)
T ss_dssp -----HHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred -----HHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence 455667788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccccc
Q 003425 731 EFPHGFQDTADK 742 (821)
Q Consensus 731 ~~~~~~~~~~~~ 742 (821)
.+..|.++....
T Consensus 131 ~~~~g~t~l~~A 142 (172)
T 3v30_A 131 EADSGYTPMDLA 142 (172)
T ss_dssp CCTTSCCHHHHH
T ss_pred cCCCCCCHHHHH
Confidence 999999887643
No 58
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=5.8e-29 Score=243.46 Aligned_cols=166 Identities=24% Similarity=0.288 Sum_probs=158.4
Q ss_pred cccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Q 003425 527 DITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGN 606 (821)
Q Consensus 527 ~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~ 606 (821)
..++..+..+..|.||||.||..|+.++++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.
T Consensus 23 ~~~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 102 (192)
T 2rfm_A 23 NLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGK 102 (192)
T ss_dssp THHHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSC
T ss_pred hhHHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Confidence 34455677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHcCChHHHHHHHhcCCCCCccc--ccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHH
Q 003425 607 TPLLEAIKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLM 684 (821)
Q Consensus 607 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~ 684 (821)
||||+|+..|+.+++++|+++|++++..+ |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++
T Consensus 103 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~ 182 (192)
T 2rfm_A 103 TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEV 182 (192)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHH
Confidence 99999999999999999999999998764 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcC
Q 003425 685 AKLLVEAG 692 (821)
Q Consensus 685 v~~Ll~~g 692 (821)
+++|+++|
T Consensus 183 v~~Ll~~~ 190 (192)
T 2rfm_A 183 IKIFTEVR 190 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 99999875
No 59
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.96 E-value=2.8e-29 Score=267.40 Aligned_cols=195 Identities=19% Similarity=0.205 Sum_probs=163.2
Q ss_pred hhHHHHhhcCCHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC--
Q 003425 541 LKVNSAAYHGDLYQLEGLIRAGADPNR-TDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN-- 617 (821)
Q Consensus 541 ~~L~~A~~~g~~~~v~~Ll~~g~~~n~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~-- 617 (821)
..+|.|+..+..++++.|++.|+++|. .|..|+||||+||..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 99 ~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~ 178 (327)
T 1sw6_A 99 QQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY 178 (327)
T ss_dssp -----CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHH
T ss_pred chhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccc
Confidence 446888888889999999999999999 89999999999999999999999999999999999999999999999998
Q ss_pred -hHHHHHHHhcC-CCCCcc--cccchhhHHHh----cCCHHHHHHHHHC--------------------CCCCCCCCCCC
Q 003425 618 -DGAASLLVKEG-ASLNVE--EAGSFLCTAVA----RGDSDLLKRVLSN--------------------GIDPNTRDYDL 669 (821)
Q Consensus 618 -~~~v~~Ll~~~-~~~~~~--~~~t~l~~A~~----~~~~~~v~~Ll~~--------------------g~~~~~~d~~g 669 (821)
.++++.|++.+ ++++.. .|.||||+|+. .|+.+++++|++. |++++.+|..|
T Consensus 179 ~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g 258 (327)
T 1sw6_A 179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER 258 (327)
T ss_dssp HTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------------
T ss_pred cHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccC
Confidence 78888888876 556654 58999999999 8999999999986 89999999999
Q ss_pred CcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCcccccc
Q 003425 670 RTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKR 743 (821)
Q Consensus 670 ~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~~ 743 (821)
.||||.|+. +++|+++ +++.+|..|+||||+|+..|+.+++++|+++|++++..+..|.+|.+.+.
T Consensus 259 ~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~ 324 (327)
T 1sw6_A 259 KDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324 (327)
T ss_dssp -CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred CChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 999999985 8999998 68889999999999999999999999999999999999999999876543
No 60
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.96 E-value=3.2e-28 Score=246.07 Aligned_cols=170 Identities=28% Similarity=0.320 Sum_probs=157.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCC-----c--ccccchhhH
Q 003425 571 DGRSPLHLAASRGYEEIMTFLIQK-GVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLN-----V--EEAGSFLCT 642 (821)
Q Consensus 571 ~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~-----~--~~~~t~l~~ 642 (821)
.|+||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|+++. . .+|.||||.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 589999999999999999999998 99999999999999999999999999999999998762 2 358899999
Q ss_pred HHhcCCHHHHHHHHHCCCCCCCCCC-------------CCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 003425 643 AVARGDSDLLKRVLSNGIDPNTRDY-------------DLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEG 709 (821)
Q Consensus 643 A~~~~~~~~v~~Ll~~g~~~~~~d~-------------~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A 709 (821)
|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A 161 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL 161 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 9999999999999999999998866 799999999999999999999999999999999999999999
Q ss_pred HHcCCHHHH----HHHHhccccc------cccCCCCCCccc
Q 003425 710 RMCGNKNLI----KLLEDAKSTQ------LLEFPHGFQDTA 740 (821)
Q Consensus 710 ~~~~~~~i~----~~Ll~~~a~~------~~~~~~~~~~~~ 740 (821)
+..|+.+++ ++|+++|++. +..+..|.++..
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~ 202 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFK 202 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHH
Confidence 999999988 9999999987 356666666554
No 61
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.96 E-value=2.1e-29 Score=268.37 Aligned_cols=176 Identities=21% Similarity=0.189 Sum_probs=154.4
Q ss_pred ccccc-hhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC---HHHHHHHHHcC-CCCCCCCCC
Q 003425 530 FHISK-HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY---EEIMTFLIQKG-VDINLKDNF 604 (821)
Q Consensus 530 ~~~~~-~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~---~~~v~~Ll~~g-~~~~~~~~~ 604 (821)
.+++. .+..|.||||+||..|+.++|++|+++|+++|.+|..|+||||+|+..|+ .++++.|++.+ ++++.+|..
T Consensus 121 ~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~ 200 (327)
T 1sw6_A 121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSM 200 (327)
T ss_dssp CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTT
T ss_pred CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCC
Confidence 44555 78899999999999999999999999999999999999999999999998 78888888886 789999999
Q ss_pred CCcHHHHHHH----cCChHHHHHHHhc--------------------CCCCCcc--cccchhhHHHhcCCHHHHHHHHHC
Q 003425 605 GNTPLLEAIK----YGNDGAASLLVKE--------------------GASLNVE--EAGSFLCTAVARGDSDLLKRVLSN 658 (821)
Q Consensus 605 g~tpL~~A~~----~~~~~~v~~Ll~~--------------------~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~ 658 (821)
|.||||+|+. .|+.+++++|++. |++++.. .|.||||.|+. +++|+++
T Consensus 201 g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~ 274 (327)
T 1sw6_A 201 NRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN 274 (327)
T ss_dssp CCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH
T ss_pred CCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh
Confidence 9999999999 8999999999987 7777765 48899999996 8999998
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q 003425 659 GIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCG 713 (821)
Q Consensus 659 g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~ 713 (821)
++|.+|..|+||||+||..|+.++|++|+++|+|++.+|..|+||||+|+.+|
T Consensus 275 --~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 275 --MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp --TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred --CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence 68899999999999999999999999999999999999999999999998765
No 62
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=6.3e-28 Score=226.57 Aligned_cols=151 Identities=32% Similarity=0.411 Sum_probs=130.6
Q ss_pred HhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCh
Q 003425 539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGND 618 (821)
Q Consensus 539 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~ 618 (821)
..++||.|+..|+.++++.|++.|++++ .+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 80 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA 80 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH
Confidence 5688899999999999999998888876 577888999999999999999999998888888888888888888877776
Q ss_pred HHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCC
Q 003425 619 GAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPK 698 (821)
Q Consensus 619 ~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~ 698 (821)
+++++|++ +|++++.+|..|.||||+|+..|+.+++++|+++|++++.+
T Consensus 81 ~~v~~Ll~-------------------------------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 129 (153)
T 1awc_B 81 NIVEVLLK-------------------------------HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ 129 (153)
T ss_dssp HHHHHHHT-------------------------------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred HHHHHHHH-------------------------------cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Confidence 66666555 45567788888999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHcCCHHHHHHH
Q 003425 699 DRWGNTPLDEGRMCGNKNLIKLL 721 (821)
Q Consensus 699 d~~g~t~l~~A~~~~~~~i~~~L 721 (821)
|..|.||+|+|+..|+.+++++|
T Consensus 130 ~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 130 SKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHh
Confidence 99999999999999999999887
No 63
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=3.2e-28 Score=231.81 Aligned_cols=160 Identities=34% Similarity=0.467 Sum_probs=139.0
Q ss_pred hhhhHhhhHHHHhhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 003425 535 HEAELALKVNSAAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAI 613 (821)
Q Consensus 535 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~ 613 (821)
.+.++.++||.|+..|+.++++.|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC 83 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence 467889999999999999999999984 5678888889999999999999999999999999999999999999999888
Q ss_pred HcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Q 003425 614 KYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGA 693 (821)
Q Consensus 614 ~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga 693 (821)
..|+.+++++|++ +|++++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus 84 ~~~~~~~v~~Ll~-------------------------------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga 132 (165)
T 3twr_A 84 SYGHYEVAELLVK-------------------------------HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 132 (165)
T ss_dssp HTTCHHHHHHHHH-------------------------------TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HcCcHHHHHHHHh-------------------------------CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 8777666666655 456677888889999999999999999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccc
Q 003425 694 SVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKS 726 (821)
Q Consensus 694 ~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a 726 (821)
+++.+|..|.||+|+|+. |+.+++++|+++||
T Consensus 133 ~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 133 DPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp CTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred CCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 999999999999999877 89999999999886
No 64
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=3.6e-28 Score=234.85 Aligned_cols=168 Identities=24% Similarity=0.258 Sum_probs=134.7
Q ss_pred hhhHhhhHHHHhhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 003425 536 EAELALKVNSAAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIK 614 (821)
Q Consensus 536 ~~~~~~~L~~A~~~g~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~ 614 (821)
+.++.++||.||..|+.++++.|++. +.+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus 2 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 81 (179)
T 3f6q_A 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAAS 81 (179)
T ss_dssp -----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 34577888888888888888888887 56788888888888888888888888888888888888888888888888887
Q ss_pred cCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Q 003425 615 YGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS 694 (821)
Q Consensus 615 ~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~ 694 (821)
.|+.+++++|++ +|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 82 ~~~~~~v~~Ll~-------------------------------~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 130 (179)
T 3f6q_A 82 HGHRDIVQKLLQ-------------------------------YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL 130 (179)
T ss_dssp TTCHHHHHHHHH-------------------------------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHH-------------------------------cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 777666665555 4556677778888888888888888888888888888
Q ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCC
Q 003425 695 VFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPH 734 (821)
Q Consensus 695 ~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~ 734 (821)
++.+|..|.||+++|+..++.+++++|+++|++.+.....
T Consensus 131 ~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~ 170 (179)
T 3f6q_A 131 VSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYK 170 (179)
T ss_dssp SSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCCC
T ss_pred cchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccCCcc
Confidence 8888888888888888888888888888888887655443
No 65
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.95 E-value=1.1e-27 Score=236.22 Aligned_cols=185 Identities=24% Similarity=0.377 Sum_probs=164.2
Q ss_pred HHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 003425 507 VLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEE 586 (821)
Q Consensus 507 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~ 586 (821)
.+..+....+.......+... ...++..+..|.||||.||..|+.+++++|++.|++++..|..|.||||+|+..|+.+
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 8 ALLEAANQRDTKKVKEILQDT-TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHTCT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHhccHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 344555555555444444433 2345667788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcC-CCCCcc--cccchhhHHHhcCC-----HHHHHHHHH
Q 003425 587 IMTFLI-QKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEG-ASLNVE--EAGSFLCTAVARGD-----SDLLKRVLS 657 (821)
Q Consensus 587 ~v~~Ll-~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~-~~~~~~--~~~t~l~~A~~~~~-----~~~v~~Ll~ 657 (821)
++++|+ ..+++++..|..|.||||+|+..|+.+++++|+++| ++++.. .|.||||.|+..++ .+++++|++
T Consensus 87 ~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~ 166 (201)
T 3hra_A 87 ILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME 166 (201)
T ss_dssp HHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHH
T ss_pred HHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHH
Confidence 999999 567899999999999999999999999999999999 787765 48899999999998 999999999
Q ss_pred CCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcC
Q 003425 658 NGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG 692 (821)
Q Consensus 658 ~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g 692 (821)
+|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 167 ~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 167 NGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred CCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 99999999999999999999999999999999987
No 66
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=6.5e-31 Score=264.20 Aligned_cols=186 Identities=20% Similarity=0.203 Sum_probs=172.1
Q ss_pred cchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 003425 533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEA 612 (821)
Q Consensus 533 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A 612 (821)
...+..+.||||.||..|+.++++.|++.|+++|..|..|.||||+||..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A 94 (229)
T 2vge_A 15 RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCA 94 (229)
T ss_dssp CCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred cccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHhcCCCCCcc---cccchhhHH--HhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHH
Q 003425 613 IKYGNDGAASLLVKEGASLNVE---EAGSFLCTA--VARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKL 687 (821)
Q Consensus 613 ~~~~~~~~v~~Ll~~~~~~~~~---~~~t~l~~A--~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~ 687 (821)
+..|+.+++++|+++|++++.. +|.||||+| +..|+.+++++|+++|++++..|..|.||++.++..+.. ++
T Consensus 95 ~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~---~~ 171 (229)
T 2vge_A 95 ASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGD---EL 171 (229)
T ss_dssp HHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTT---BC
T ss_pred HHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhcccc---cc
Confidence 9999999999999999999864 689999999 999999999999999999999999999999976655433 67
Q ss_pred HHHcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 003425 688 LVEAGAS--VFPKDRWGNTPLDEGRMCGNKNLIKLL 721 (821)
Q Consensus 688 Ll~~ga~--~~~~d~~g~t~l~~A~~~~~~~i~~~L 721 (821)
|++.|++ ++.+|..|+||||+|+..|+.++++.+
T Consensus 172 ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~ 207 (229)
T 2vge_A 172 SFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRN 207 (229)
T ss_dssp CBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred CccccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence 8889998 778899999999999999999888653
No 67
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=7.8e-28 Score=232.47 Aligned_cols=142 Identities=20% Similarity=0.238 Sum_probs=120.0
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCC
Q 003425 570 YDGRSPLHLAASRGYEEIMTFLIQK-GVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGD 648 (821)
Q Consensus 570 ~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~ 648 (821)
.++.+|||.||..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----------------------- 59 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI----------------------- 59 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHH-----------------------
Confidence 4567788888888888888888887 5677777877888887777766665555555
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccc
Q 003425 649 SDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQ 728 (821)
Q Consensus 649 ~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~ 728 (821)
++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus 60 --------~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 131 (179)
T 3f6q_A 60 --------MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 131 (179)
T ss_dssp --------HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred --------HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence 456677888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccccc
Q 003425 729 LLEFPHGFQDTADK 742 (821)
Q Consensus 729 ~~~~~~~~~~~~~~ 742 (821)
...+..|.++....
T Consensus 132 ~~~~~~g~tpl~~A 145 (179)
T 3f6q_A 132 SICNKYGEMPVDKA 145 (179)
T ss_dssp SBCCTTSCCGGGGS
T ss_pred chhccCCCCcHHHH
Confidence 99999999998754
No 68
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.95 E-value=3.3e-28 Score=252.54 Aligned_cols=206 Identities=18% Similarity=0.211 Sum_probs=163.7
Q ss_pred hchHHHHHHHhcCCcchhhhhhhccc--cccccc----chhhhHhhhHHHHhhc---CCHHHHHHHHHcCCCC-------
Q 003425 502 CDGRKVLTNLLQGKESDLRLKQLQSD--ITFHIS----KHEAELALKVNSAAYH---GDLYQLEGLIRAGADP------- 565 (821)
Q Consensus 502 ~~~~~~l~~~l~~~~~~~~~~~l~~~--~~~~~~----~~~~~~~~~L~~A~~~---g~~~~v~~Ll~~g~~~------- 565 (821)
..+...+..+....+.+.....++.. ....++ ..+..|.||||+||.. |+.+++++|++.|+++
T Consensus 11 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i 90 (273)
T 2pnn_A 11 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFV 90 (273)
T ss_dssp CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHh
Confidence 34556677777766665444444321 111222 3478899999999986 9999999999998653
Q ss_pred C----CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--------------CCCcHHHHHHHcCChHHHHHHHh-
Q 003425 566 N----RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDN--------------FGNTPLLEAIKYGNDGAASLLVK- 626 (821)
Q Consensus 566 n----~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--------------~g~tpL~~A~~~~~~~~v~~Ll~- 626 (821)
| ..|..|.||||+|+..|+.+++++|+++|++++.++. .|.||||+|+..|+.+++++|++
T Consensus 91 ~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 170 (273)
T 2pnn_A 91 NASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQN 170 (273)
T ss_dssp TCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHC
T ss_pred hcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 2 2567899999999999999999999999999999987 79999999999999999999999
Q ss_pred --cCCCCCcc--cccchhhHHHhcCC---------HHHHHHHHHCCCCCC-------CCCCCCCcHHHHHHHcCcHHHHH
Q 003425 627 --EGASLNVE--EAGSFLCTAVARGD---------SDLLKRVLSNGIDPN-------TRDYDLRTPLHVAASEGLYLMAK 686 (821)
Q Consensus 627 --~~~~~~~~--~~~t~l~~A~~~~~---------~~~v~~Ll~~g~~~~-------~~d~~g~T~Lh~A~~~g~~~~v~ 686 (821)
+|++++.. +|.||||+|+..|+ .+++++|+++|++++ .+|..|.||||+|+..|+.++++
T Consensus 171 ~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~ 250 (273)
T 2pnn_A 171 SWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLA 250 (273)
T ss_dssp SSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred ccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHH
Confidence 99999876 48899999999998 899999999999997 48999999999999999999999
Q ss_pred HHHHcCC-CCCCCCCCCCCHHH
Q 003425 687 LLVEAGA-SVFPKDRWGNTPLD 707 (821)
Q Consensus 687 ~Ll~~ga-~~~~~d~~g~t~l~ 707 (821)
+|+++|| |+......+.+|-+
T Consensus 251 ~Ll~~ga~dp~~~~~~~~~~~~ 272 (273)
T 2pnn_A 251 YILQREIHEPECRHAAAHHHHH 272 (273)
T ss_dssp HHHHHHTC--------------
T ss_pred HHHHCCCCCchhhhhhhhhccC
Confidence 9999999 88888777776643
No 69
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.95 E-value=5.8e-28 Score=248.14 Aligned_cols=172 Identities=22% Similarity=0.208 Sum_probs=158.7
Q ss_pred CCCcHHHHHHHcCCHH----HHHHHHHcCCCCCC----CCCCCCcHHHHHHHc---CChHHHHHHHhcCCCCCc------
Q 003425 571 DGRSPLHLAASRGYEE----IMTFLIQKGVDINL----KDNFGNTPLLEAIKY---GNDGAASLLVKEGASLNV------ 633 (821)
Q Consensus 571 ~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~----~~~~g~tpL~~A~~~---~~~~~v~~Ll~~~~~~~~------ 633 (821)
.|+||||.||..|+.+ ++++|+++|++++. +|..|.||||+|+.. |+.+++++|+++|++++.
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 80 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN 80 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence 3889999999999997 66778889999998 899999999999999 999999999999887652
Q ss_pred -------ccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCC-------------CCcHHHHHHHcCcHHHHHHHHH---
Q 003425 634 -------EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYD-------------LRTPLHVAASEGLYLMAKLLVE--- 690 (821)
Q Consensus 634 -------~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~-------------g~T~Lh~A~~~g~~~~v~~Ll~--- 690 (821)
..|.||||+|+..|+.+++++|+++|++++..|.. |.||||+|+..|+.+++++|++
T Consensus 81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~ 160 (256)
T 2etb_A 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160 (256)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 34899999999999999999999999999999886 9999999999999999999999
Q ss_pred cCCCCCCCCCCCCCHHHHHHH--cCCHH-------HHHHHHhccccc-------cccCCCCCCccccc
Q 003425 691 AGASVFPKDRWGNTPLDEGRM--CGNKN-------LIKLLEDAKSTQ-------LLEFPHGFQDTADK 742 (821)
Q Consensus 691 ~ga~~~~~d~~g~t~l~~A~~--~~~~~-------i~~~Ll~~~a~~-------~~~~~~~~~~~~~~ 742 (821)
+|++++.+|..|+||||+|+. .++.+ ++++|+++|++. +..+..|.++.+.+
T Consensus 161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A 228 (256)
T 2etb_A 161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLA 228 (256)
T ss_dssp CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHH
T ss_pred cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHH
Confidence 999999999999999999999 88888 999999999999 77888887776543
No 70
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=4.6e-27 Score=221.45 Aligned_cols=153 Identities=25% Similarity=0.398 Sum_probs=132.4
Q ss_pred HhhhHHHHhhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 003425 539 LALKVNSAAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 617 (821)
Q Consensus 539 ~~~~L~~A~~~g~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~ 617 (821)
+.++||.||..|+.++++.|++. +.+++..|..|.||||+ +..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence 57899999999999999999988 44888889999999999 88899999999999999999988888888888888777
Q ss_pred hHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCC
Q 003425 618 DGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFP 697 (821)
Q Consensus 618 ~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~ 697 (821)
.+++++|++ +|++++.+|..|.||||+|+..|+.+++++|+++ ++++.
T Consensus 81 ~~~v~~Ll~-------------------------------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~ 128 (156)
T 1bd8_A 81 LDTLKVLVE-------------------------------HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHR 128 (156)
T ss_dssp HHHHHHHHH-------------------------------TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTC
T ss_pred HHHHHHHHH-------------------------------cCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCC
Confidence 666666655 4556777888899999999999999999999988 99999
Q ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 003425 698 KDRWGNTPLDEGRMCGNKNLIKLLEDA 724 (821)
Q Consensus 698 ~d~~g~t~l~~A~~~~~~~i~~~Ll~~ 724 (821)
+|..|.||||+|+..|+.+++++|+++
T Consensus 129 ~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 129 RDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp CCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 999999999999999999999999864
No 71
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.95 E-value=7.2e-27 Score=221.85 Aligned_cols=161 Identities=34% Similarity=0.475 Sum_probs=133.7
Q ss_pred chHHHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 003425 503 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASR 582 (821)
Q Consensus 503 ~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~ 582 (821)
.++.++ .+...++.+....+++++.+ ++..+..|.||||.|+..|+.++++.|++.|++++.+|.+|+||||+|+..
T Consensus 4 lg~~L~-~Aa~~G~~~~v~~Ll~~Gad--vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~ 80 (169)
T 4gpm_A 4 LGKRLI-EAAENGNKDRVKDLIENGAD--VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN 80 (169)
T ss_dssp HHHHHH-HHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHCCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHc
Confidence 344433 45566677777777777654 556788999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCC
Q 003425 583 GYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDP 662 (821)
Q Consensus 583 g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~ 662 (821)
|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|++ +|+++
T Consensus 81 g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~-------------------------------~gad~ 129 (169)
T 4gpm_A 81 GHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS-------------------------------KGADV 129 (169)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-------------------------------TTCCT
T ss_pred CCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-------------------------------cCCCc
Confidence 99999999999999999999999999999988877766666655 45677
Q ss_pred CCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCC
Q 003425 663 NTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFP 697 (821)
Q Consensus 663 ~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~ 697 (821)
+.+|..|+||||+|+..|+.+++++|+++||+++.
T Consensus 130 ~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 130 NTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence 78888899999999999999999999999998865
No 72
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=3.8e-28 Score=246.43 Aligned_cols=178 Identities=16% Similarity=0.062 Sum_probs=101.8
Q ss_pred hhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 003425 536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKY 615 (821)
Q Consensus 536 ~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~ 615 (821)
+..|.||||.|+..|+.+.++.|+++|++++.. ..|.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+..
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~ 80 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA 80 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 346889999999999999999999999888754 6788999999999999999999999999999998899999999888
Q ss_pred CChHHHHHHHhcCCCCCccc--ccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCC-cHHHHH--HHcCcHHHHHHHHH
Q 003425 616 GNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLR-TPLHVA--ASEGLYLMAKLLVE 690 (821)
Q Consensus 616 ~~~~~v~~Ll~~~~~~~~~~--~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~-T~Lh~A--~~~g~~~~v~~Ll~ 690 (821)
|+.+++++|+++|++++..+ |.||||.|+..|+.+++++|+++|++++..|..|. ||||+| +..|+.+++++|++
T Consensus 81 g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~ 160 (239)
T 1ycs_B 81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG 160 (239)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHH
Confidence 88888888888777665543 55666666666666666666666666666665554 666666 55566666666666
Q ss_pred cCCCCCCC---------CCCCCCHHHHHHHcCC
Q 003425 691 AGASVFPK---------DRWGNTPLDEGRMCGN 714 (821)
Q Consensus 691 ~ga~~~~~---------d~~g~t~l~~A~~~~~ 714 (821)
+|++++.. +..|.+|+++|...|.
T Consensus 161 ~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 161 VQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred hhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 66655544 3345555555555443
No 73
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.94 E-value=2.6e-27 Score=243.89 Aligned_cols=194 Identities=19% Similarity=0.213 Sum_probs=161.0
Q ss_pred hHHHHHHHhcCCcchhhhhhhc----cccccccc--chhhhHhhhHHHHh---hcCCHHHHHHHHHcCCC----------
Q 003425 504 GRKVLTNLLQGKESDLRLKQLQ----SDITFHIS--KHEAELALKVNSAA---YHGDLYQLEGLIRAGAD---------- 564 (821)
Q Consensus 504 ~~~~l~~~l~~~~~~~~~~~l~----~~~~~~~~--~~~~~~~~~L~~A~---~~g~~~~v~~Ll~~g~~---------- 564 (821)
.+..+..+...++.......++ .+...... ..+..|.||||.|+ ..|+.+++++|++.|++
T Consensus 5 ~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 84 (260)
T 3jxi_A 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINS 84 (260)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTC
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcc
Confidence 3444555555555443333332 33333222 23477999999999 77999999999998754
Q ss_pred -CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC--------------CCCCcHHHHHHHcCChHHHHHHHh---
Q 003425 565 -PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD--------------NFGNTPLLEAIKYGNDGAASLLVK--- 626 (821)
Q Consensus 565 -~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--------------~~g~tpL~~A~~~~~~~~v~~Ll~--- 626 (821)
.+..|..|.||||+||..|+.+++++|+++|++++.++ ..|.||||+|+..|+.+++++|++
T Consensus 85 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 164 (260)
T 3jxi_A 85 PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH 164 (260)
T ss_dssp CBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred cccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 34556689999999999999999999999999999998 689999999999999999999999
Q ss_pred cCCCCCcc--cccchhhHHHhcCC---------HHHHHHHHHCCCCC-------CCCCCCCCcHHHHHHHcCcHHHHHHH
Q 003425 627 EGASLNVE--EAGSFLCTAVARGD---------SDLLKRVLSNGIDP-------NTRDYDLRTPLHVAASEGLYLMAKLL 688 (821)
Q Consensus 627 ~~~~~~~~--~~~t~l~~A~~~~~---------~~~v~~Ll~~g~~~-------~~~d~~g~T~Lh~A~~~g~~~~v~~L 688 (821)
+|++++.. .|.||||+|+..++ .+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|
T Consensus 165 ~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L 244 (260)
T 3jxi_A 165 KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244 (260)
T ss_dssp CCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHH
Confidence 89999876 48999999999888 79999999999998 67999999999999999999999999
Q ss_pred HHcCCCCCC
Q 003425 689 VEAGASVFP 697 (821)
Q Consensus 689 l~~ga~~~~ 697 (821)
+++|++...
T Consensus 245 l~~g~~~~~ 253 (260)
T 3jxi_A 245 IRREIADAA 253 (260)
T ss_dssp HHHHHHHHC
T ss_pred HHhCCCccc
Confidence 999877543
No 74
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.94 E-value=8.6e-27 Score=241.70 Aligned_cols=165 Identities=21% Similarity=0.268 Sum_probs=156.1
Q ss_pred ccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHH-----HcCCHHHHHHHHHcCCCCCCC
Q 003425 528 ITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA-DPNRTDYDGRSPLHLAA-----SRGYEEIMTFLIQKGVDINLK 601 (821)
Q Consensus 528 ~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~-~~n~~d~~g~t~L~~A~-----~~g~~~~v~~Ll~~g~~~~~~ 601 (821)
.+..++..|..|.||||+||..|+.++++.|++.|+ +++..|..|.||||+|+ ..++.+++++|++.|++++..
T Consensus 100 ~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~ 179 (276)
T 4hbd_A 100 LDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKA 179 (276)
T ss_dssp HHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCC
T ss_pred HhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCcccc
Confidence 344467788999999999999999999999999998 99999999999999999 668999999999999999999
Q ss_pred CCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHH
Q 003425 602 DNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLS-NGIDPNTRDYDLRTPLHVAAS 678 (821)
Q Consensus 602 ~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~T~Lh~A~~ 678 (821)
+..|.||||+|+..|+.+++++|+++|++++.. +|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+.
T Consensus 180 ~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~ 259 (276)
T 4hbd_A 180 SQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALD 259 (276)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHH
Confidence 999999999999999999999999999999875 48999999999999999999999 899999999999999999999
Q ss_pred cCcHHHHHHHHHcC
Q 003425 679 EGLYLMAKLLVEAG 692 (821)
Q Consensus 679 ~g~~~~v~~Ll~~g 692 (821)
.|+.+++++|++++
T Consensus 260 ~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 260 AGQSEIASMLYSRM 273 (276)
T ss_dssp HTCHHHHHHHHHHC
T ss_pred cCCHHHHHHHHhcc
Confidence 99999999999874
No 75
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.94 E-value=1.6e-26 Score=230.42 Aligned_cols=207 Identities=20% Similarity=0.190 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHHhhhcceeee--eecCCCcCeehhHHHHHHHHHHhHhheeeEEEEeCCceEEeeccHHHHHHHhhhhh
Q 003425 75 AWTKFILIWAVYSSIFTPVEFG--FFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSF 152 (821)
Q Consensus 75 ~w~~~~~~~~~~~~~~~p~~~~--f~~~~~~~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~~~~v~~~~~I~~~Ylk~~f 152 (821)
.|+.+++++++++.+..++... +..+....+..+|.+++++|++|+++||+++ +.+ ++|+|+ +
T Consensus 9 ~f~~~i~~lil~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~------------~~~--~~y~~~-~ 73 (223)
T 1orq_C 9 LVELGVSYAALLSVIVVVVECTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS------------GDP--AGYVKK-T 73 (223)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTT------------SCH--HHHHHH-H
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHHHHHHccc------------ccH--HHHHHH-h
Confidence 4888888888888887766543 3334456678999999999999999999765 223 799998 9
Q ss_pred HHHHHhhhhHHHHHhh-cCc--hhHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003425 153 IIDLFSCMPWDLIYKA-SGR--KEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYY 229 (821)
Q Consensus 153 ~iDlis~lP~~~~~~~-~~~--~~~~~~l~llrl~rl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~h~~ac~~~~ 229 (821)
++|+++++|+++.... .+. ...++.+|++|++|+.|+.+...+..+.........++..++..++++.|+.||++|+
T Consensus 74 iiDllailP~~~~~~~~~~~~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 153 (223)
T 1orq_C 74 LYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYI 153 (223)
T ss_dssp HHHCTTHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999876531 111 2345566666666666555433232222211112235667777888889999999998
Q ss_pred HHccCCCCCCCCceeccccCCCCCcccccccchHHHHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHH
Q 003425 230 LATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAY 309 (821)
Q Consensus 230 i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~ 309 (821)
++...++ +| +.+|.+|+||+++|||||||||++|.|+.|++++++++++|+.++|+
T Consensus 154 ~e~~~~~-----~~-------------------~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~ 209 (223)
T 1orq_C 154 VEYPDPN-----SS-------------------IKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTL 209 (223)
T ss_dssp TTSSSTT-----CS-------------------CCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCcC-----CC-------------------cCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHH
Confidence 7542111 00 22699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 003425 310 LIGNMTALIVK 320 (821)
Q Consensus 310 ~i~~i~~~~~~ 320 (821)
++|.+++.+.+
T Consensus 210 ~i~~i~~~~~~ 220 (223)
T 1orq_C 210 LIGTVSNMFQK 220 (223)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 76
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.94 E-value=5.2e-27 Score=226.83 Aligned_cols=167 Identities=22% Similarity=0.288 Sum_probs=144.5
Q ss_pred hHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 003425 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYE----EIMTFLIQKGVDINLKDNFGNTPLLEA 612 (821)
Q Consensus 538 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d-~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~tpL~~A 612 (821)
.+.++|+.||..|+.+.++.+++.+. +..+ ..|+||||+|+.+|+. +++++|+++|+++|.+|..|+||||+|
T Consensus 5 ~~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a 82 (186)
T 3t8k_A 5 SEYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL 82 (186)
T ss_dssp HHCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHH
T ss_pred ccccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence 46689999999999999999998774 4455 6799999999999975 599999999999999999999999999
Q ss_pred HHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCC-cHHHHHHHc-----CcHHHHH
Q 003425 613 IKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLR-TPLHVAASE-----GLYLMAK 686 (821)
Q Consensus 613 ~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~-T~Lh~A~~~-----g~~~~v~ 686 (821)
+..++.++.+ ..+++++|+++|+++|.+|..|+ ||||+|+.. ++.++++
T Consensus 83 ~~~~~~~~~~-------------------------~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~ 137 (186)
T 3t8k_A 83 FQGGGNDITG-------------------------TTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYK 137 (186)
T ss_dssp HHHCTTCHHH-------------------------HHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHH
T ss_pred HHcCCcchhh-------------------------HHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHH
Confidence 9988765432 24678888899999999999999 999999984 3567999
Q ss_pred HHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccccccc
Q 003425 687 LLVE-AGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLE 731 (821)
Q Consensus 687 ~Ll~-~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~ 731 (821)
+|++ +|+|++.+|..|+||||+|+..|+.+++++|++...+...+
T Consensus 138 ~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~ 183 (186)
T 3t8k_A 138 LIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK 183 (186)
T ss_dssp HHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 9999 99999999999999999999999999999999877655443
No 77
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=5.6e-27 Score=237.78 Aligned_cols=165 Identities=22% Similarity=0.234 Sum_probs=122.8
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc--cccchhhHHHhc
Q 003425 569 DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVAR 646 (821)
Q Consensus 569 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~ 646 (821)
+..|.||||.|+..|+.++++.|+++|++++.. ..|.||||.|+..|+.+++++|++.|++++.. .|.||||+|+..
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~ 80 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA 80 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 356999999999999999999999999999864 77899999999999999999999999998875 489999999999
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCC-CHHHHH--HHcCCHHHHHHHHh
Q 003425 647 GDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGN-TPLDEG--RMCGNKNLIKLLED 723 (821)
Q Consensus 647 ~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~-t~l~~A--~~~~~~~i~~~Ll~ 723 (821)
|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|. ||+|+| +..|+.+++++|++
T Consensus 81 g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~ 160 (239)
T 1ycs_B 81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG 160 (239)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998877 999999 88899999999999
Q ss_pred ccccccccCCC
Q 003425 724 AKSTQLLEFPH 734 (821)
Q Consensus 724 ~~a~~~~~~~~ 734 (821)
+|++....+..
T Consensus 161 ~~a~~~~~~~~ 171 (239)
T 1ycs_B 161 VQEKMGIMNKG 171 (239)
T ss_dssp HHHHTTTTGGG
T ss_pred hhhcccccccc
Confidence 99998776443
No 78
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.93 E-value=6.4e-27 Score=235.04 Aligned_cols=187 Identities=18% Similarity=0.054 Sum_probs=160.2
Q ss_pred HHHHHHcCCCCCCC---CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCC
Q 003425 555 LEGLIRAGADPNRT---DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASL 631 (821)
Q Consensus 555 v~~Ll~~g~~~n~~---d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~ 631 (821)
++.|+++|++++.. +.+|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~ 80 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 46788999987655 456778899999999999999999999999999999999999999999999999999999999
Q ss_pred Ccc--cccchhhHHHhcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHH--HHcCcHHHHHHHHHcCCCCCCCCCCCCCHH
Q 003425 632 NVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRD-YDLRTPLHVA--ASEGLYLMAKLLVEAGASVFPKDRWGNTPL 706 (821)
Q Consensus 632 ~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d-~~g~T~Lh~A--~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l 706 (821)
+.. .|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+| +..|+.+++++|+++|++++.+|..|.||+
T Consensus 81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l 160 (229)
T 2vge_A 81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL 160 (229)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEES
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHH
Confidence 876 48899999999999999999999999999987 6999999999 999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcccc--ccccCCCCCCccccccC
Q 003425 707 DEGRMCGNKNLIKLLEDAKST--QLLEFPHGFQDTADKRN 744 (821)
Q Consensus 707 ~~A~~~~~~~i~~~Ll~~~a~--~~~~~~~~~~~~~~~~~ 744 (821)
+.++..+. .++|++.|++ ....+..|.++...+..
T Consensus 161 ~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~ 197 (229)
T 2vge_A 161 WDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAAL 197 (229)
T ss_dssp SCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEE
T ss_pred HHHhhccc---cccCccccccccccccCCCcccHHHHHHH
Confidence 96655543 3688999998 56778889888875443
No 79
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=2.6e-25 Score=203.92 Aligned_cols=134 Identities=30% Similarity=0.445 Sum_probs=107.5
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhh
Q 003425 562 GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLC 641 (821)
Q Consensus 562 g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~ 641 (821)
+++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+. |+.+++++|++
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~--------------- 65 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLL--------------- 65 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHH---------------
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHH---------------
Confidence 45677777778888888888888888888888777777777777777777766 66655555555
Q ss_pred HHHhcCCHHHHHHHHHCCCCCCCCCCC-CCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q 003425 642 TAVARGDSDLLKRVLSNGIDPNTRDYD-LRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKL 720 (821)
Q Consensus 642 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~-g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~ 720 (821)
+|++++.+|.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++
T Consensus 66 ----------------~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~ 129 (136)
T 1d9s_A 66 ----------------HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARY 129 (136)
T ss_dssp ----------------HTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHH
T ss_pred ----------------CCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHH
Confidence 55666777777 8899999999999999999999999999988899999999999999999999
Q ss_pred HHhcccc
Q 003425 721 LEDAKST 727 (821)
Q Consensus 721 Ll~~~a~ 727 (821)
|+++|++
T Consensus 130 Ll~~Gad 136 (136)
T 1d9s_A 130 LHAATGD 136 (136)
T ss_dssp HHHHHCC
T ss_pred HHHcCCC
Confidence 9988875
No 80
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=2.4e-25 Score=204.22 Aligned_cols=132 Identities=24% Similarity=0.313 Sum_probs=119.0
Q ss_pred cccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-CCcHH
Q 003425 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF-GNTPL 609 (821)
Q Consensus 531 ~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~tpL 609 (821)
+++..+..|.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+. |+.+++++|+++|++++.+|.. |.|||
T Consensus 4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L 82 (136)
T 1d9s_A 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPV 82 (136)
T ss_dssp CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHH
T ss_pred CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHH
Confidence 456778889999999999999999999999999999999999999999999 9999999999999999999998 89999
Q ss_pred HHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHH
Q 003425 610 LEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLV 689 (821)
Q Consensus 610 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll 689 (821)
|+|+..|+.+++++|++ +|++++.+|..|.||||+|+..|+.+++++|+
T Consensus 83 ~~A~~~~~~~~v~~Ll~-------------------------------~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll 131 (136)
T 1d9s_A 83 HDAAREGFLDTLVVLHR-------------------------------AGARLDVCDAWGRLPVDLAEEQGHRDIARYLH 131 (136)
T ss_dssp HHHHHHTCHHHHHHHHH-------------------------------TCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH-------------------------------cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 99988777766666655 45567778888999999999999999999999
Q ss_pred HcCCC
Q 003425 690 EAGAS 694 (821)
Q Consensus 690 ~~ga~ 694 (821)
++|||
T Consensus 132 ~~Gad 136 (136)
T 1d9s_A 132 AATGD 136 (136)
T ss_dssp HHHCC
T ss_pred HcCCC
Confidence 99886
No 81
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=1.3e-25 Score=211.33 Aligned_cols=139 Identities=23% Similarity=0.236 Sum_probs=68.0
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCccc--ccc-hhhHHH
Q 003425 568 TDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE--AGS-FLCTAV 644 (821)
Q Consensus 568 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~t-~l~~A~ 644 (821)
.+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+ .|+.+++++|+++|++++..+ |.| |||+|+
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~ 86 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAA 86 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHH
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence 3444555555555555555555555555555555555555555542 444444444444444333321 233 444444
Q ss_pred hcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHH
Q 003425 645 ARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLD 707 (821)
Q Consensus 645 ~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~ 707 (821)
..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||.+
T Consensus 87 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~ 149 (156)
T 1bi7_B 87 REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149 (156)
T ss_dssp HHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred HCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence 444444555555556666777777777777777777777777777777777777777777765
No 82
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.92 E-value=6.3e-26 Score=251.53 Aligned_cols=287 Identities=13% Similarity=0.138 Sum_probs=162.3
Q ss_pred ccccccCCcCeEEcCCC-hhHHHHHHHHHHHHHHHhhhcceeee--eecC--------------------------CCcC
Q 003425 54 LSGFRHFSRNLVFHPDN-RWYRAWTKFILIWAVYSSIFTPVEFG--FFRG--------------------------LSKN 104 (821)
Q Consensus 54 ~~~~~~~~~~~~~~P~s-~~~~~w~~~~~~~~~~~~~~~p~~~~--f~~~--------------------------~~~~ 104 (821)
...+|.+.|.++.+|.| ...++|+.+++++++++++++.+... +... ....
T Consensus 161 ~~~~r~~lw~l~e~p~sS~~a~~f~~~~i~~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2r9r_B 161 ENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDP 240 (514)
T ss_dssp SCSSHHHHHHTTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCH
T ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccchhhhH
Confidence 45677888888888975 56788888888888888777665532 1110 2334
Q ss_pred eehhHHHHHHHHHHhHhheeeEEEEeCCceEEeeccHHHHHHHhhh-hhHHHHHhhhhHHHHHhhcC----c---hhHHH
Q 003425 105 LYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS-SFIIDLFSCMPWDLIYKASG----R---KEAVR 176 (821)
Q Consensus 105 ~~~~~~~~~~~f~~Di~l~f~t~y~~~~~~~~v~~~~~I~~~Ylk~-~f~iDlis~lP~~~~~~~~~----~---~~~~~ 176 (821)
+.++|+++.++|++|++++++++ +.+ ++|+++ |+++|+++++|+++.+.... . ...++
T Consensus 241 l~~ie~i~~~iFtiE~ilR~~~~------------~~k--~~Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~ 306 (514)
T 2r9r_B 241 FFIVETLCIIWFSFEFLVRFFAC------------PSK--AGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRR 306 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS------------SCS--SSSTTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC------------CcH--HHHHhchhHHHHHHHHHHHHHHHHhhhccccchhhhhHHH
Confidence 67899999999999999988654 212 589999 77999999999876554321 1 11134
Q ss_pred HHHHHHHHHHHHHHHHHHh---hhhhHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCceeccccCCCC
Q 003425 177 YLLWIRLYRVRKVSQFFHK---MEKDIR-INYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDY 252 (821)
Q Consensus 177 ~l~llrl~rl~r~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~~~w~~~~~~~~~ 252 (821)
.+|++|++|++|+.++.+. ++.... +......+..+++++++.++++|+++|++....+ .
T Consensus 307 ~lrvlRllRvlRilkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~~~~-----~----------- 370 (514)
T 2r9r_B 307 VVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADER-----D----------- 370 (514)
T ss_dssp HHHHHHHHGGGGGGGGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCT-----T-----------
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeccCC-----C-----------
Confidence 4444555555444444433 332221 1222334555556666777888888887643211 0
Q ss_pred CcccccccchHHHHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 003425 253 SYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMT 332 (821)
Q Consensus 253 ~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~ 332 (821)
+.+.+|..|+||+++|||||||||+.|.++.+++++++++++|+++++++++.+.+.+....+.++.++..+
T Consensus 371 --------~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~~~~~~ 442 (514)
T 2r9r_B 371 --------SQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQA 442 (514)
T ss_dssp --------CSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC------
T ss_pred --------ccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 113468999999999999999999999999999999999999999999999999887765322222222222
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhccccHHHHHhhCcHHHHHHHHHhh
Q 003425 333 DLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQTL 384 (821)
Q Consensus 333 ~~~~~m~~~~lp~~l~~ri~~y~~~~~~~~~~~~~~l~~lp~~L~~~i~~~~ 384 (821)
..++++.....|.....+- + -.+...++.-..+|.+.++.++....
T Consensus 443 l~~h~iicg~~~~~~~l~~-----~-~~~~~~~~s~~~el~e~~~~~~~~~~ 488 (514)
T 2r9r_B 443 QYLQVTSSPKIPSSPDLKK-----S-RSASTISKSDYMEIQEGVNNSNEDFR 488 (514)
T ss_dssp ----------------------------------------------------
T ss_pred hhCCEEEeCCCccchhHHh-----c-ccCCCccccccccccccccccccccc
Confidence 2233444333343322110 0 01122334445667777776665443
No 83
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.91 E-value=2.4e-26 Score=246.66 Aligned_cols=186 Identities=15% Similarity=0.031 Sum_probs=145.3
Q ss_pred hhhhHhhhHHHHhhcCCHHHHHHHHHcCCCC---CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCcH
Q 003425 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADP---NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDI---NLKDNFGNTP 608 (821)
Q Consensus 535 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~---n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~tp 608 (821)
.+.++.||||.||..|+.++|++|++.|+.. +..+..|.||||+||..|+.+++++|+++|+++ +..+.+ .||
T Consensus 88 ~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~Tp 166 (376)
T 2aja_A 88 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHA 166 (376)
T ss_dssp HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHH
T ss_pred cCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCH
Confidence 4455679999999999999999999888732 234456788999999999999999999998762 222233 899
Q ss_pred HHHHHHcCChHHHHHHHhcCCCCCc--c--cccchhhHHH-hcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHH
Q 003425 609 LLEAIKYGNDGAASLLVKEGASLNV--E--EAGSFLCTAV-ARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYL 683 (821)
Q Consensus 609 L~~A~~~~~~~~v~~Ll~~~~~~~~--~--~~~t~l~~A~-~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~ 683 (821)
||+|+..|+.+++++|+++|++++. . +|.||||.|+ ..|+.+++++|+++|++ |.||||.|+..|+.+
T Consensus 167 Lh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~Aa~~g~~e 239 (376)
T 2aja_A 167 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-------LAYAEIHEFEYGEKY 239 (376)
T ss_dssp HHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-------HHHHHHCTTTTTTTT
T ss_pred HHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc-------cchHHHHHHHCCCHH
Confidence 9999999999999999999988654 3 4789999999 99999999999987742 789999999999988
Q ss_pred HHHHHHHcCCCCC-------------------------------------------------------------CCCCCC
Q 003425 684 MAKLLVEAGASVF-------------------------------------------------------------PKDRWG 702 (821)
Q Consensus 684 ~v~~Ll~~ga~~~-------------------------------------------------------------~~d~~g 702 (821)
++++|+++|++++ ...+.+
T Consensus 240 vv~lL~~~ga~~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~ 319 (376)
T 2aja_A 240 VNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDA 319 (376)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCC
T ss_pred HHHHHHhcCcccccccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCc
Confidence 8888887765321 112346
Q ss_pred CCHHHHHHHcCCHHHHHHHHhccccc
Q 003425 703 NTPLDEGRMCGNKNLIKLLEDAKSTQ 728 (821)
Q Consensus 703 ~t~l~~A~~~~~~~i~~~Ll~~~a~~ 728 (821)
.||||+|+..|+.+++++|++.|+-.
T Consensus 320 ~~~L~~A~~~g~~e~v~lLl~~~~v~ 345 (376)
T 2aja_A 320 NELLRLALRLGNQGACALLLSIPSVL 345 (376)
T ss_dssp CHHHHHHHHHTCTTHHHHHTTSHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHHcChHHH
Confidence 68899999999999999999876543
No 84
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.91 E-value=7.2e-25 Score=206.26 Aligned_cols=143 Identities=21% Similarity=0.238 Sum_probs=118.0
Q ss_pred cchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc-HHHH
Q 003425 533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNT-PLLE 611 (821)
Q Consensus 533 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-pL~~ 611 (821)
...+..|.||||.||..|+.+++++|++.|+++|..|..|.||||+|+ .|+.+++++|+++|++++.+|..|.| |||+
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD 84 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence 355677899999999999999999999999999999999999999985 99999999999999999999999999 9999
Q ss_pred HHHcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 003425 612 AIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVA 676 (821)
Q Consensus 612 A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A 676 (821)
|+..|+.+++++|+++|++++.. .|.||||+|+..|+.+++++|+++|++++.+|..|.||.+.+
T Consensus 85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 99999999999999999999875 488999999999999999999999999999999999998754
No 85
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.90 E-value=1.4e-23 Score=198.92 Aligned_cols=156 Identities=24% Similarity=0.290 Sum_probs=131.0
Q ss_pred HHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 003425 506 KVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYE 585 (821)
Q Consensus 506 ~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~ 585 (821)
..+..+......+.....++++.+ ++..+..|.||||.|+. |+.+++++|++.|++++.+|..|.||||+|+..|+.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 83 (162)
T 1ihb_A 7 NELASAAARGDLEQLTSLLQNNVN--VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL 83 (162)
T ss_dssp HHHHHHHHHTCHHHHHHHTTSCCC--TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred hHHHHHHHcCCHHHHHHHHhCCCC--ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 344555555555555555655443 45667889999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCC
Q 003425 586 EIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTR 665 (821)
Q Consensus 586 ~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~ 665 (821)
+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++ +++..
T Consensus 84 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------------~~~~~ 133 (162)
T 1ihb_A 84 DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS------------------------------NVGHR 133 (162)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC------------------------------CTTCC
T ss_pred HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC------------------------------CCCCc
Confidence 999999999999999999999999999998888888888776653 24677
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Q 003425 666 DYDLRTPLHVAASEGLYLMAKLLVEAGAS 694 (821)
Q Consensus 666 d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~ 694 (821)
|..|.||||+|+..|+.+++++|+++|||
T Consensus 134 ~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 134 NHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 88899999999999999999999999886
No 86
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.90 E-value=2.9e-23 Score=187.38 Aligned_cols=126 Identities=44% Similarity=0.645 Sum_probs=94.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHH
Q 003425 571 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSD 650 (821)
Q Consensus 571 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~ 650 (821)
+|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~------------------------ 56 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE------------------------ 56 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH------------------------
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHH------------------------
Confidence 46777777777777777777777777777777777777777776666555555554
Q ss_pred HHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Q 003425 651 LLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKST 727 (821)
Q Consensus 651 ~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~ 727 (821)
+|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+|+|+..|+.+++++|+++|++
T Consensus 57 -------~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 57 -------AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp -------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred -------cCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 4455666677778888888888888888888888888888888888888888888888888888887764
No 87
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.90 E-value=1.5e-23 Score=192.26 Aligned_cols=64 Identities=36% Similarity=0.465 Sum_probs=32.6
Q ss_pred CCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 003425 661 DPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDA 724 (821)
Q Consensus 661 ~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~ 724 (821)
+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus 72 ~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 72 DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 3344444455555555555555555555555555555555555555555555555555555544
No 88
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.90 E-value=2.6e-23 Score=198.12 Aligned_cols=140 Identities=25% Similarity=0.306 Sum_probs=122.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHH
Q 003425 571 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSD 650 (821)
Q Consensus 571 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~ 650 (821)
.|.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------------------------ 57 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ------------------------ 57 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH------------------------
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHH------------------------
Confidence 57788888888888888888888888888888888888888887777666666555
Q ss_pred HHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccc
Q 003425 651 LLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLL 730 (821)
Q Consensus 651 ~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~ 730 (821)
+|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++..
T Consensus 58 -------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 130 (167)
T 3v31_A 58 -------NGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 130 (167)
T ss_dssp -------TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred -------cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 4556677888999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCcccc
Q 003425 731 EFPHGFQDTAD 741 (821)
Q Consensus 731 ~~~~~~~~~~~ 741 (821)
.+..|.++...
T Consensus 131 ~~~~g~t~l~~ 141 (167)
T 3v31_A 131 ETDSGYNSMDL 141 (167)
T ss_dssp CCTTSCCHHHH
T ss_pred cCCCCCCHHHH
Confidence 88888776553
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.90 E-value=3.3e-23 Score=189.86 Aligned_cols=128 Identities=33% Similarity=0.414 Sum_probs=107.2
Q ss_pred chhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 003425 534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAI 613 (821)
Q Consensus 534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~ 613 (821)
.....+.||||.||..|+.++++.|++.|+++|..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 9 HHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA 88 (136)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred cccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999988999988888
Q ss_pred HcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcC
Q 003425 614 KYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG 692 (821)
Q Consensus 614 ~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g 692 (821)
..|+.+++++|++ +|++++..|..|.||||+|+..|+.+++++|+++|
T Consensus 89 ~~~~~~~v~~Ll~-------------------------------~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 89 FIGHLEIAEVLLK-------------------------------HGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHTCHHHHHHHHH-------------------------------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHH-------------------------------cCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 8777666666655 45566777888889999999888889998888876
No 90
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.90 E-value=3.8e-24 Score=196.53 Aligned_cols=134 Identities=36% Similarity=0.455 Sum_probs=106.2
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhh
Q 003425 562 GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLC 641 (821)
Q Consensus 562 g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~ 641 (821)
|+|+ .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~--------------- 64 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ--------------- 64 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH---------------
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH---------------
Confidence 5677 677888888888888888888888888888888888888888888877766666665555
Q ss_pred HHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 003425 642 TAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721 (821)
Q Consensus 642 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~L 721 (821)
+|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+|+|+..++.+++++|
T Consensus 65 ----------------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l 128 (137)
T 3c5r_A 65 ----------------HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLP 128 (137)
T ss_dssp ----------------TTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC
T ss_pred ----------------cCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhc
Confidence 4556777888899999999999999999999999999999999999999999999998888888
Q ss_pred Hhcccc
Q 003425 722 EDAKST 727 (821)
Q Consensus 722 l~~~a~ 727 (821)
.+.++.
T Consensus 129 ~~~~~s 134 (137)
T 3c5r_A 129 EKNESS 134 (137)
T ss_dssp ------
T ss_pred cccccC
Confidence 776654
No 91
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.89 E-value=6.5e-23 Score=195.72 Aligned_cols=142 Identities=30% Similarity=0.324 Sum_probs=122.5
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCC
Q 003425 569 DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGD 648 (821)
Q Consensus 569 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~ 648 (821)
...+.||||.||..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~---------------------- 68 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK---------------------- 68 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----------------------
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----------------------
Confidence 3456788888888888888888888888888888888888888877776666665555
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccc
Q 003425 649 SDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQ 728 (821)
Q Consensus 649 ~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~ 728 (821)
+|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus 69 ---------~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 139 (169)
T 2y1l_E 69 ---------NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV 139 (169)
T ss_dssp ---------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred ---------cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 55567788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcccc
Q 003425 729 LLEFPHGFQDTAD 741 (821)
Q Consensus 729 ~~~~~~~~~~~~~ 741 (821)
...+..|.++...
T Consensus 140 ~~~~~~g~t~l~~ 152 (169)
T 2y1l_E 140 NAQDKFGKTAFDI 152 (169)
T ss_dssp TCCCTTSCCHHHH
T ss_pred CCcCCCCCCHHHH
Confidence 8888888777653
No 92
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=7.4e-23 Score=184.73 Aligned_cols=126 Identities=43% Similarity=0.603 Sum_probs=113.9
Q ss_pred hHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 003425 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 617 (821)
Q Consensus 538 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~ 617 (821)
+|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 80 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred hHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Q 003425 618 DGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS 694 (821)
Q Consensus 618 ~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~ 694 (821)
.+++++|+++ |++++.+|..|.||||+|+..|+.+++++|+++|||
T Consensus 81 ~~~~~~Ll~~-------------------------------g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 81 LEVVKLLLEA-------------------------------GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHHHHHT-------------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHc-------------------------------CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 7666666554 556677788899999999999999999999999886
No 93
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.89 E-value=2e-25 Score=239.51 Aligned_cols=179 Identities=13% Similarity=0.024 Sum_probs=156.1
Q ss_pred hHhhhHHHHhh-cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCcHHHHHH
Q 003425 538 ELALKVNSAAY-HGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDI---NLKDNFGNTPLLEAI 613 (821)
Q Consensus 538 ~~~~~L~~A~~-~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~tpL~~A~ 613 (821)
.+.++++.|+. .++.+.++++++.|.+. .||||+||..|+.+++++|+++|+.. +..+..|.||||+|+
T Consensus 64 ~~ll~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa 136 (376)
T 2aja_A 64 RQLLCLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA 136 (376)
T ss_dssp HHHHHHHHHHTTTTCTTHHHHHHHHTCCH-------HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCCCc-------CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHH
Confidence 45678888877 58899999999988654 59999999999999999999999832 234456789999999
Q ss_pred HcCChHHHHHHHhcCCC-----CCcccccchhhHHHhcCCHHHHHHHHHCCCCCCC--CCCCCCcHHHHHH-HcCcHHHH
Q 003425 614 KYGNDGAASLLVKEGAS-----LNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNT--RDYDLRTPLHVAA-SEGLYLMA 685 (821)
Q Consensus 614 ~~~~~~~v~~Ll~~~~~-----~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~--~d~~g~T~Lh~A~-~~g~~~~v 685 (821)
..|+.+++++|+++|++ ++..+ .||||.|+..|+.+++++|+++|++++. .|..|.||||+|+ ..|+.++|
T Consensus 137 ~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv 215 (376)
T 2aja_A 137 ENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVI 215 (376)
T ss_dssp HTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHH
T ss_pred HcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHH
Confidence 99999999999999975 44445 8999999999999999999999999887 8888999999999 99999999
Q ss_pred HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccccccc
Q 003425 686 KLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLE 731 (821)
Q Consensus 686 ~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~ 731 (821)
++|+++|++ |.|||++|+..|+.+++++|+++|++....
T Consensus 216 ~~Ll~~ga~-------~~taL~~Aa~~g~~evv~lL~~~ga~~~~~ 254 (376)
T 2aja_A 216 NFLLDCPVM-------LAYAEIHEFEYGEKYVNPFIARHVNRLKEM 254 (376)
T ss_dssp HHHTTSHHH-------HHHHHHCTTTTTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCc-------cchHHHHHHHCCCHHHHHHHHhcCcccccc
Confidence 999998753 899999999999999999999999887544
No 94
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.89 E-value=8.6e-23 Score=197.62 Aligned_cols=143 Identities=26% Similarity=0.282 Sum_probs=120.8
Q ss_pred cchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHH
Q 003425 533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD-NFGNTPLLE 611 (821)
Q Consensus 533 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~tpL~~ 611 (821)
...+..|.||||.||..|+.++++.|++ |+++|.+|..|+||||+|+..|+.+++++|+++|++++.++ ..|.||||+
T Consensus 38 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~ 116 (183)
T 3deo_A 38 ADVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 116 (183)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHH
T ss_pred ccCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence 3456789999999999999999999999 99999999999999999999999999999999999999988 889999998
Q ss_pred HHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHc
Q 003425 612 AIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEA 691 (821)
Q Consensus 612 A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ 691 (821)
|+..|+.+++++|+++ |++++.+|..|.||||+|+..++.
T Consensus 117 A~~~~~~~~v~~Ll~~-------------------------------ga~~~~~d~~g~tpl~~A~~~~~~--------- 156 (183)
T 3deo_A 117 AAGYVRPEVVEALVEL-------------------------------GADIEVEDERGLTALELAREILKT--------- 156 (183)
T ss_dssp HHHTTCHHHHHHHHHH-------------------------------TCCTTCCCTTSCCHHHHHHHHHHT---------
T ss_pred HHhcCcHHHHHHHHHc-------------------------------CCCCcCCCCCCCCHHHHHHHhccC---------
Confidence 8887777776666665 456677778888888888764432
Q ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 003425 692 GASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDA 724 (821)
Q Consensus 692 ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~ 724 (821)
..+.+|+++|+..|+.+++++|.++
T Consensus 157 --------~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 157 --------TPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp --------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred --------cccccHHHHHHHcCHHHHHHHHHHh
Confidence 3467888888888888888888754
No 95
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.89 E-value=1.4e-22 Score=192.55 Aligned_cols=143 Identities=29% Similarity=0.307 Sum_probs=114.5
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcC
Q 003425 569 DYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARG 647 (821)
Q Consensus 569 d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~ 647 (821)
|.+|.||||.|+..|+.++++.|++ .+.+++..+..|.||||+|+..|+.
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~----------------------------- 55 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRV----------------------------- 55 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCH-----------------------------
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChH-----------------------------
Confidence 4456666666666666666666666 3445555566666666666655554
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Q 003425 648 DSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKST 727 (821)
Q Consensus 648 ~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~ 727 (821)
+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 56 --~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 133 (165)
T 3twr_A 56 --SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 133 (165)
T ss_dssp --HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred --HHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 455555556677888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCccccc
Q 003425 728 QLLEFPHGFQDTADK 742 (821)
Q Consensus 728 ~~~~~~~~~~~~~~~ 742 (821)
+...+..|.++....
T Consensus 134 ~~~~~~~g~t~l~~a 148 (165)
T 3twr_A 134 PTKKNRDGNTPLDLV 148 (165)
T ss_dssp TTCCCTTSCCTGGGS
T ss_pred CcccCCCCCChhHhH
Confidence 999999888877653
No 96
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=7.2e-23 Score=207.92 Aligned_cols=146 Identities=25% Similarity=0.263 Sum_probs=123.6
Q ss_pred chhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHH
Q 003425 534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD-NFGNTPLLEA 612 (821)
Q Consensus 534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~tpL~~A 612 (821)
..+..|.||||.||..|+.++++.|++ |+++|.+|..|.||||+||..|+.+++++|+++|++++.++ ..|.||||+|
T Consensus 40 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A 118 (244)
T 3ui2_A 40 DVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 118 (244)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHH
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence 445688999999999999999999999 99999999999999999999999999999999999999888 7788888888
Q ss_pred HHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcC
Q 003425 613 IKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG 692 (821)
Q Consensus 613 ~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g 692 (821)
+..|+.+++++|++ +|++++.+|..|.||||+|+..++
T Consensus 119 ~~~g~~~~v~~Ll~-------------------------------~ga~~~~~d~~g~t~l~~A~~~~~----------- 156 (244)
T 3ui2_A 119 AGYVRPEVVEALVE-------------------------------LGADIEVEDERGLTALELAREILK----------- 156 (244)
T ss_dssp HHTTCHHHHHHHHH-------------------------------TTCCTTCCCTTCCCHHHHHHHHHT-----------
T ss_pred HHcCCHHHHHHHHH-------------------------------CCCCCCCCCCCCCcHHHHHHHHHh-----------
Confidence 87777666655555 556778888899999999986332
Q ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccc
Q 003425 693 ASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQ 728 (821)
Q Consensus 693 a~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~ 728 (821)
+..+.|||++|+..|+.+++++|++++.+.
T Consensus 157 ------~~~~~~~l~~a~~~g~~~iv~~L~~~~~~~ 186 (244)
T 3ui2_A 157 ------TTPKGNPMQFGRRIGLEKVINVLEGQVFEY 186 (244)
T ss_dssp ------TCCCSSHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred ------ccCCCCHHHHHHHcChHHHHHHHHHhcccc
Confidence 256889999999999999999999876553
No 97
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.88 E-value=1.1e-22 Score=190.64 Aligned_cols=138 Identities=26% Similarity=0.311 Sum_probs=112.6
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHH
Q 003425 573 RSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLL 652 (821)
Q Consensus 573 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v 652 (821)
.||||.|+..|+.+++++|+++|++++ .+..|.||||+|+..|+.++++
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~------------------------------ 51 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTE------------------------------ 51 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHH------------------------------
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHH------------------------------
Confidence 466777777777777777777766665 3556666666666655555554
Q ss_pred HHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccC
Q 003425 653 KRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEF 732 (821)
Q Consensus 653 ~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~ 732 (821)
+|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++....+
T Consensus 52 -~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 130 (153)
T 1awc_B 52 -VLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS 130 (153)
T ss_dssp -HHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred -HHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC
Confidence 5555566778888999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCccccc
Q 003425 733 PHGFQDTADK 742 (821)
Q Consensus 733 ~~~~~~~~~~ 742 (821)
..|.++....
T Consensus 131 ~~g~t~l~~A 140 (153)
T 1awc_B 131 KFCKTAFDIS 140 (153)
T ss_dssp TTSCCHHHHH
T ss_pred CCCCCHHHHH
Confidence 8888776543
No 98
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.88 E-value=2.4e-22 Score=188.96 Aligned_cols=151 Identities=25% Similarity=0.331 Sum_probs=126.7
Q ss_pred HHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 003425 507 VLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEE 586 (821)
Q Consensus 507 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~ 586 (821)
.+..+...++.+.....++. .....+..+..|.||||. |..|+.++++.|++.|++++.+|..|.||||+|+..|+.+
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 82 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD 82 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence 34445555555555555554 334566678889999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCC
Q 003425 587 IMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRD 666 (821)
Q Consensus 587 ~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d 666 (821)
++++|+++|++++.+|..|.||||+|+..|+.+++++|+++ ++++.+|
T Consensus 83 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--------------------------------~~~~~~~ 130 (156)
T 1bd8_A 83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE--------------------------------SDLHRRD 130 (156)
T ss_dssp HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--------------------------------SCTTCCC
T ss_pred HHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc--------------------------------cCCCCcC
Confidence 99999999999999999999999999998888877777764 3566777
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHHc
Q 003425 667 YDLRTPLHVAASEGLYLMAKLLVEA 691 (821)
Q Consensus 667 ~~g~T~Lh~A~~~g~~~~v~~Ll~~ 691 (821)
..|.||||+|+..|+.+++++|+++
T Consensus 131 ~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 131 ARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp TTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 8888888888888888888888864
No 99
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.88 E-value=6e-23 Score=198.27 Aligned_cols=137 Identities=17% Similarity=0.073 Sum_probs=121.2
Q ss_pred hhHhhhHHHHhhcCCH----HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC------HHHHHHHHHcCCCCCCCCCCCC
Q 003425 537 AELALKVNSAAYHGDL----YQLEGLIRAGADPNRTDYDGRSPLHLAASRGY------EEIMTFLIQKGVDINLKDNFGN 606 (821)
Q Consensus 537 ~~~~~~L~~A~~~g~~----~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~------~~~v~~Ll~~g~~~~~~~~~g~ 606 (821)
..|.||||.|+..|+. +++++|+++|+|+|.+|..|+||||+|+..|+ .+++++|+++|+++|.+|..|.
T Consensus 36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ 115 (186)
T 3t8k_A 36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYK 115 (186)
T ss_dssp HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGT
T ss_pred cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcC
Confidence 7799999999999985 58999999999999999999999999999987 6889999999999999999999
Q ss_pred -cHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcCcHHH
Q 003425 607 -TPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLS-NGIDPNTRDYDLRTPLHVAASEGLYLM 684 (821)
Q Consensus 607 -tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~T~Lh~A~~~g~~~~ 684 (821)
||||+|+..+..+ .++.+++++|++ +|++++.+|..|.||||+|+..|+.++
T Consensus 116 ttpLh~A~~~~~~~--------------------------~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~ 169 (186)
T 3t8k_A 116 IVVFKNIFNYFVDE--------------------------NEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIA 169 (186)
T ss_dssp BCTTGGGGGCCSCH--------------------------HHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHH
T ss_pred chHHHHHHHcCCCh--------------------------hhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHH
Confidence 9999998754321 123467888888 899999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCC
Q 003425 685 AKLLVEAGASVFPKD 699 (821)
Q Consensus 685 v~~Ll~~ga~~~~~d 699 (821)
+++|.++..+.+.++
T Consensus 170 v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 170 LKMMEDYIKKYNLKE 184 (186)
T ss_dssp HHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhccc
Confidence 999998876666655
No 100
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.87 E-value=2.4e-22 Score=210.11 Aligned_cols=137 Identities=18% Similarity=0.080 Sum_probs=82.8
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCC------CCCCCCcHHHHHHHc---CChHHHHHHHhcCCCCCcc--cccchhh
Q 003425 573 RSPLHLAASRGYEEIMTFLIQKGVDINL------KDNFGNTPLLEAIKY---GNDGAASLLVKEGASLNVE--EAGSFLC 641 (821)
Q Consensus 573 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------~~~~g~tpL~~A~~~---~~~~~v~~Ll~~~~~~~~~--~~~t~l~ 641 (821)
.++|+.|+..|+.+.++.|++.|++++. .+..|.||||+|+.. |+.+++++|+++|++++.. +|.||||
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh 231 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH 231 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHH
T ss_pred HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 3445555555555555555555555444 344455555555543 4445555555555444432 2445555
Q ss_pred HHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Q 003425 642 TAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNK 715 (821)
Q Consensus 642 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~ 715 (821)
+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++ .|.||||+|+..|+.
T Consensus 232 ~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 232 YAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence 55555556666666667778888899999999999999999999999999886 478999999988864
No 101
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.87 E-value=1.8e-22 Score=202.13 Aligned_cols=141 Identities=23% Similarity=0.245 Sum_probs=82.6
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCC
Q 003425 569 DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGD 648 (821)
Q Consensus 569 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~ 648 (821)
+..|.||||+||..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--------------------- 128 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQ--------------------- 128 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTS---------------------
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcC---------------------
Confidence 34556666666666666666666666666666666666666666666555555555443
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccc
Q 003425 649 SDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQ 728 (821)
Q Consensus 649 ~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~ 728 (821)
.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++++.|++.|+..
T Consensus 129 ---------~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~ 199 (222)
T 3ehr_A 129 ---------PNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199 (222)
T ss_dssp ---------TTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred ---------CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence 14455666667777777777777777777777777777777777777777777777777777777777777
Q ss_pred cccCCCCCCcc
Q 003425 729 LLEFPHGFQDT 739 (821)
Q Consensus 729 ~~~~~~~~~~~ 739 (821)
...+..++.+.
T Consensus 200 ~~~~~~~~l~~ 210 (222)
T 3ehr_A 200 TLSNAEDYLDD 210 (222)
T ss_dssp -----------
T ss_pred hccchhhhccc
Confidence 77766665543
No 102
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.86 E-value=7.2e-22 Score=177.41 Aligned_cols=110 Identities=27% Similarity=0.234 Sum_probs=72.6
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCH
Q 003425 570 YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDS 649 (821)
Q Consensus 570 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~ 649 (821)
..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----------------------- 61 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL----------------------- 61 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHT-----------------------
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHH-----------------------
Confidence 445666666666666666666666666666666666666666666555554444444
Q ss_pred HHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Q 003425 650 DLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGR 710 (821)
Q Consensus 650 ~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~ 710 (821)
+|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||+|+|.
T Consensus 62 --------~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 62 --------KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114 (123)
T ss_dssp --------TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred --------cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence 34455666667777777777777777777777777777777777777777774
No 103
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.86 E-value=3.5e-22 Score=183.29 Aligned_cols=129 Identities=24% Similarity=0.318 Sum_probs=109.4
Q ss_pred chhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 003425 534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAI 613 (821)
Q Consensus 534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~ 613 (821)
..+..|.||||.||..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~ 84 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA 84 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Q 003425 614 KYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGA 693 (821)
Q Consensus 614 ~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga 693 (821)
..|+.+++++|+++ |++++.+|..|.||||+|+..+..+++++|.+.+.
T Consensus 85 ~~~~~~~v~~Ll~~-------------------------------ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 85 KNGHVDIVKLLLSY-------------------------------GASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp HTTCHHHHHHHHHT-------------------------------TCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred HcCCHHHHHHHHHc-------------------------------CCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 88777776666654 45666777778888888887777777777766543
No 104
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.86 E-value=4.1e-22 Score=199.58 Aligned_cols=138 Identities=19% Similarity=0.258 Sum_probs=110.4
Q ss_pred chhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHH
Q 003425 534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK-GVDINLKDNFGNTPLLEA 612 (821)
Q Consensus 534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~tpL~~A 612 (821)
..+..|.||||.||..|+.++++.|++.|+++|.+|..|.||||+||..|+.+++++|+++ |++++.+|..|.||||+|
T Consensus 68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A 147 (222)
T 3ehr_A 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA 147 (222)
T ss_dssp HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHH
T ss_pred ccccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHH
Confidence 3456788999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcC
Q 003425 613 IKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG 692 (821)
Q Consensus 613 ~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g 692 (821)
+..|+.+++++|+++ |++++.+|..|.||||+|+..|+.++++.|++.|
T Consensus 148 ~~~~~~~~v~~Ll~~-------------------------------ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~ 196 (222)
T 3ehr_A 148 AWKGYADIVQLLLAK-------------------------------GARTDLRNIEKKLAFDMATNAACASLLKKKQGTD 196 (222)
T ss_dssp HHHTCHHHHHHHHHH-------------------------------TCCSCCCCTTSCCHHHHCCSHHHHHHHC------
T ss_pred HHcCCHHHHHHHHHc-------------------------------CCCCccccCCCCCHHHHhcchhHHHHHHHHhccc
Confidence 888877777666664 5567778888999999999999999999999999
Q ss_pred CCCCCCCCCC
Q 003425 693 ASVFPKDRWG 702 (821)
Q Consensus 693 a~~~~~d~~g 702 (821)
++.+..|..|
T Consensus 197 ~~~~~~~~~~ 206 (222)
T 3ehr_A 197 AVRTLSNAED 206 (222)
T ss_dssp ----------
T ss_pred hhhhccchhh
Confidence 8887776554
No 105
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.85 E-value=2e-21 Score=174.55 Aligned_cols=117 Identities=33% Similarity=0.442 Sum_probs=100.0
Q ss_pred hhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 003425 536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKY 615 (821)
Q Consensus 536 ~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~ 615 (821)
+..|.||||.|+..|+.++++.|++.|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~ 83 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE 83 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHH
Q 003425 616 GNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYL 683 (821)
Q Consensus 616 ~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~ 683 (821)
|+.+++++|+++ |++++.+|..|.||||+|+..+..+
T Consensus 84 ~~~~~v~~Ll~~-------------------------------ga~~~~~~~~g~t~l~~A~~~~~~~ 120 (123)
T 3aaa_C 84 GHVSCVKLLLSK-------------------------------GADKTVKGPDGLTAFEATDNQAIKA 120 (123)
T ss_dssp TCHHHHHHHHHT-------------------------------TCCTTCCCTTSCCHHHHCCCHHHHH
T ss_pred CCHHHHHHHHHc-------------------------------CCCCCCcCCCCCCHHHHhCCHHHHH
Confidence 877776666665 4566677777888888885444333
No 106
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.85 E-value=4.5e-23 Score=199.63 Aligned_cols=127 Identities=27% Similarity=0.248 Sum_probs=106.9
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCC
Q 003425 569 DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGD 648 (821)
Q Consensus 569 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~ 648 (821)
+..|.||||+|+..|+.++++.|++ |++++.+|..|.||||+|+..|+.+++++|++
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~---------------------- 97 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAE---------------------- 97 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH----------------------
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH----------------------
Confidence 4578899999999999999999999 89999999999999988888777666666655
Q ss_pred HHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Q 003425 649 SDLLKRVLSNGIDPNTRD-YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKST 727 (821)
Q Consensus 649 ~~~v~~Ll~~g~~~~~~d-~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~ 727 (821)
+|+++|.+| ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+..+.++..+++
T Consensus 98 ---------~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~~ 168 (183)
T 3deo_A 98 ---------AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRR 168 (183)
T ss_dssp ---------TTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred ---------cCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcccccHHHHHHH
Confidence 455667676 7899999999999999999999999999999999999999999997766555555555443
No 107
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.84 E-value=1.2e-20 Score=194.95 Aligned_cols=190 Identities=17% Similarity=0.087 Sum_probs=141.0
Q ss_pred hhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHH
Q 003425 536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNR-TDYDGRSPLHLAASRGYEEIMTFLIQK-GVDINLKDNFGNTPLLEAI 613 (821)
Q Consensus 536 ~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~tpL~~A~ 613 (821)
|..+.+.++.+...|+....+.+...-.+... +-..+....+ ....-..+++... ....+..+....++|+.|+
T Consensus 63 d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~----~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~ 138 (278)
T 1dcq_A 63 DVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIA----RKDYITAKYMERRYARKKHADTAAKLHSLCEAV 138 (278)
T ss_dssp SCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHH----HHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHH----HHHHHHHHHHHhhcccccccccchhhhhhhhHh
Confidence 34556778888888887776655432221111 1011111111 1111112232222 1112222223457899999
Q ss_pred HcCChHHHHHHHhcCCCCCc--------ccccchhhHHHhc---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcH
Q 003425 614 KYGNDGAASLLVKEGASLNV--------EEAGSFLCTAVAR---GDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLY 682 (821)
Q Consensus 614 ~~~~~~~v~~Ll~~~~~~~~--------~~~~t~l~~A~~~---~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~ 682 (821)
..|+.+.++.+++.|++++. ..|.||||.|+.. |+.+++++|+++|+++|.+|..|+||||+|+..|+.
T Consensus 139 ~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~ 218 (278)
T 1dcq_A 139 KTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNA 218 (278)
T ss_dssp HTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCH
T ss_pred hhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCH
Confidence 99999999999999988652 3588999999999 899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc
Q 003425 683 LMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQL 729 (821)
Q Consensus 683 ~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~ 729 (821)
+++++|+++|+|++.+|..|.||||+|+..|+.+++++|+++|++..
T Consensus 219 ~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~ 265 (278)
T 1dcq_A 219 ECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF 265 (278)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999998754
No 108
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.83 E-value=2.7e-20 Score=198.76 Aligned_cols=145 Identities=29% Similarity=0.311 Sum_probs=109.9
Q ss_pred hHhhhHHHHhhc-CCHHHHHHHHHcCCCCCCCC--CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 003425 538 ELALKVNSAAYH-GDLYQLEGLIRAGADPNRTD--YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIK 614 (821)
Q Consensus 538 ~~~~~L~~A~~~-g~~~~v~~Ll~~g~~~n~~d--~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~ 614 (821)
.+.|+||.|+.. |+.++++.|++.|+++|..+ ..|.||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+.
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~ 277 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI 277 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 567899999999 99999999999999999988 899999999999999999999999999999999999999999988
Q ss_pred cCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcC--
Q 003425 615 YGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG-- 692 (821)
Q Consensus 615 ~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g-- 692 (821)
.|+.+++++|++ +|++++..|..|.||||+|+..|+.+++++|+.++
T Consensus 278 ~g~~~~v~~LL~-------------------------------~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~ 326 (368)
T 3jue_A 278 LGHTGLACLFLK-------------------------------RGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR 326 (368)
T ss_dssp HTCHHHHHHHHH-------------------------------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred cCcHHHHHHHHH-------------------------------CcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 877766666655 45567778888889999999999999999888775
Q ss_pred -CCCCCCCCCCCCHHHHHHHcC
Q 003425 693 -ASVFPKDRWGNTPLDEGRMCG 713 (821)
Q Consensus 693 -a~~~~~d~~g~t~l~~A~~~~ 713 (821)
++....+..+.|+++++....
T Consensus 327 ~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 327 EAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp ----------------------
T ss_pred cccccccCCCCCCHHHHHHHHH
Confidence 334455667788887766544
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.83 E-value=2.1e-20 Score=210.46 Aligned_cols=127 Identities=25% Similarity=0.251 Sum_probs=87.7
Q ss_pred hhHHHHhhcCCHHHHHHHHHcCCCCCCC------CCCCCcHHHHHHH---cCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 003425 541 LKVNSAAYHGDLYQLEGLIRAGADPNRT------DYDGRSPLHLAAS---RGYEEIMTFLIQKGVDINLKDNFGNTPLLE 611 (821)
Q Consensus 541 ~~L~~A~~~g~~~~v~~Ll~~g~~~n~~------d~~g~t~L~~A~~---~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~ 611 (821)
+.||.|+..|+.+.++.|++.|+|+|.. |..|.||||+||. .|+.+++++|+++|+++|.+|..|+||||+
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~ 213 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 213 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHH
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence 5677777777777777777777777665 6677777777755 677777777777777777777777777777
Q ss_pred HHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHc
Q 003425 612 AIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEA 691 (821)
Q Consensus 612 A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ 691 (821)
|+..|+.+++++|++ +|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus 214 A~~~g~~~~v~~Ll~-------------------------------~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ 262 (497)
T 3lvq_E 214 AALYNQPDCLKLLLK-------------------------------GRALVGTVNEAGETALDIARKKHHKECEELLEQA 262 (497)
T ss_dssp HTTTTCHHHHHHHHH-------------------------------TCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHH-------------------------------cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence 766666555555554 5566677777777777777777777777777777
Q ss_pred CCCCCCC
Q 003425 692 GASVFPK 698 (821)
Q Consensus 692 ga~~~~~ 698 (821)
|++++..
T Consensus 263 ga~~~~~ 269 (497)
T 3lvq_E 263 QAGTFAF 269 (497)
T ss_dssp CC-----
T ss_pred CCCCCCC
Confidence 7777653
No 110
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.82 E-value=5.3e-20 Score=155.93 Aligned_cols=93 Identities=39% Similarity=0.523 Sum_probs=86.2
Q ss_pred cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Q 003425 635 EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGN 714 (821)
Q Consensus 635 ~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 714 (821)
+|.||||.|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 36788888888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccc
Q 003425 715 KNLIKLLEDAKST 727 (821)
Q Consensus 715 ~~i~~~Ll~~~a~ 727 (821)
.+++++|+++|++
T Consensus 81 ~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 81 LEVVKLLLEAGAY 93 (93)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999999975
No 111
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.82 E-value=1.4e-19 Score=186.97 Aligned_cols=131 Identities=21% Similarity=0.197 Sum_probs=107.5
Q ss_pred chhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCC------CCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCC
Q 003425 534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPN------RTDYDGRSPLHLAASR---GYEEIMTFLIQKGVDINLKDNF 604 (821)
Q Consensus 534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n------~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~ 604 (821)
.......++|+.|+..|+.+.++.+++.|++++ ..|..|.||||+|+.. |+.+++++|+++|+++|.+|..
T Consensus 125 ~~~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~ 204 (278)
T 1dcq_A 125 ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGK 204 (278)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTT
T ss_pred cccchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCC
Confidence 344556678889999999999988888888844 4477888899988888 8888888888888888888888
Q ss_pred CCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHH
Q 003425 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLM 684 (821)
Q Consensus 605 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~ 684 (821)
|.||||+|+..|+.+++++|++ +|++++.+|..|.||||+|+..|+.++
T Consensus 205 g~TpLh~A~~~g~~~~v~~Ll~-------------------------------~gad~~~~d~~g~tpL~~A~~~~~~~~ 253 (278)
T 1dcq_A 205 GSTALHYCCLTDNAECLKLLLR-------------------------------GKASIEIANESGETPLDIAKRLKHEHC 253 (278)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHH-------------------------------TTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHH-------------------------------cCCCCCCccCCCCCHHHHHHHcCCHHH
Confidence 8888888887777666655555 566778888999999999999999999
Q ss_pred HHHHHHcCCCC
Q 003425 685 AKLLVEAGASV 695 (821)
Q Consensus 685 v~~Ll~~ga~~ 695 (821)
+++|+++|++.
T Consensus 254 v~~Ll~~ga~~ 264 (278)
T 1dcq_A 254 EELLTQALSGR 264 (278)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHcCCCC
Confidence 99999998853
No 112
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.82 E-value=6.7e-20 Score=191.56 Aligned_cols=126 Identities=25% Similarity=0.146 Sum_probs=118.6
Q ss_pred CCCCCcHHHHHHHcCChHHHHHHHhcCCCCCc--------ccccchhhHHHhc---CCHHHHHHHHHCCCCCCCCCCCCC
Q 003425 602 DNFGNTPLLEAIKYGNDGAASLLVKEGASLNV--------EEAGSFLCTAVAR---GDSDLLKRVLSNGIDPNTRDYDLR 670 (821)
Q Consensus 602 ~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~--------~~~~t~l~~A~~~---~~~~~v~~Ll~~g~~~~~~d~~g~ 670 (821)
...+.++|+.|+..|+.+.++.|++.|++++. ..|.||||+|+.. |+.+++++|+++|+++|.+|..|+
T Consensus 148 ~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~ 227 (301)
T 2b0o_E 148 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN 227 (301)
T ss_dssp CC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCC
T ss_pred cCchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCC
Confidence 33456889999999999999999999999875 3588999999997 899999999999999999999999
Q ss_pred cHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Q 003425 671 TPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKST 727 (821)
Q Consensus 671 T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~ 727 (821)
||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 228 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~ 284 (301)
T 2b0o_E 228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG 284 (301)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999987
No 113
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.81 E-value=7.1e-20 Score=172.82 Aligned_cols=143 Identities=24% Similarity=0.397 Sum_probs=126.8
Q ss_pred HHHHHhhCcHHHHHHHHHhhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEee
Q 003425 365 EASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGI 444 (821)
Q Consensus 365 ~~~~l~~lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~ 444 (821)
.+++++.||++||.++..+++.++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++.
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~- 83 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ- 83 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE-
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE-
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccCCccceEEEeCCCCcccccccccc--CCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHh
Q 003425 445 EENGTEDYVSYLHPNSSFGEVSILCN--IPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLL 512 (821)
Q Consensus 445 ~~~g~~~~i~~l~~G~~fGe~~~~~~--~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l 512 (821)
.+..+..+.+|++||+.+++.+ .+++++++|.++|+++.|++++|.++++++|++...+++.+.
T Consensus 84 ----~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~ 149 (160)
T 4f8a_A 84 ----DDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLI 149 (160)
T ss_dssp ----TTEEEEEEETTCEEECCTTTCSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHCC
T ss_pred ----CCEEEEEecCCCEeCcHHHhcCcccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999988 799999999999999999999999999999999999888763
No 114
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.81 E-value=7.9e-20 Score=154.87 Aligned_cols=93 Identities=40% Similarity=0.563 Sum_probs=87.6
Q ss_pred hHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 003425 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 617 (821)
Q Consensus 538 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~ 617 (821)
+|.||||.|+..|+.+++++|++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCC
Q 003425 618 DGAASLLVKEGAS 630 (821)
Q Consensus 618 ~~~v~~Ll~~~~~ 630 (821)
.+++++|+++|++
T Consensus 81 ~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 81 LEVVKLLLEAGAY 93 (93)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999999874
No 115
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.80 E-value=2.3e-19 Score=191.54 Aligned_cols=126 Identities=27% Similarity=0.290 Sum_probs=98.3
Q ss_pred CCcHHHHHHHc-CCHHHHHHHHHcCCCCCCCC--CCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCC
Q 003425 572 GRSPLHLAASR-GYEEIMTFLIQKGVDINLKD--NFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGD 648 (821)
Q Consensus 572 g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~--~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~ 648 (821)
+.|+||.|+.. |+.++++.|+++|+++|..+ ..|.||||+|+. .|+
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~-------------------------------~g~ 247 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATA-------------------------------ANS 247 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHH-------------------------------TTC
T ss_pred CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHH-------------------------------CCC
Confidence 44566666665 66666666666666665555 455555555554 455
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccc
Q 003425 649 SDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQ 728 (821)
Q Consensus 649 ~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~ 728 (821)
.+++++|+++|+++|..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++++...
T Consensus 248 ~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~ 327 (368)
T 3jue_A 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMRE 327 (368)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc
Confidence 55566666677788999999999999999999999999999999999999999999999999999999999999988543
No 116
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.79 E-value=2.5e-19 Score=201.58 Aligned_cols=134 Identities=24% Similarity=0.136 Sum_probs=103.9
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCC------CCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcC
Q 003425 574 SPLHLAASRGYEEIMTFLIQKGVDINLK------DNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARG 647 (821)
Q Consensus 574 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~------~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~ 647 (821)
+.||.|+..|+.++++.|++.|+++|.. |..|.||||+||.. +..|
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~----------------------------a~~g 185 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKV----------------------------ANQA 185 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHT----------------------------CCTT
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHh----------------------------cccc
Confidence 5677777777777777777777666655 55555666555441 2256
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Q 003425 648 DSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKST 727 (821)
Q Consensus 648 ~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~ 727 (821)
+.+++++|+++|+++|.+|..|+||||+||..|+.+++++|+++|||++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 186 ~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~ 265 (497)
T 3lvq_E 186 SLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG 265 (497)
T ss_dssp THHHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-
T ss_pred cHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence 67777777788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCC
Q 003425 728 QLLEFPHG 735 (821)
Q Consensus 728 ~~~~~~~~ 735 (821)
......+.
T Consensus 266 ~~~~~~h~ 273 (497)
T 3lvq_E 266 TFAFPLHV 273 (497)
T ss_dssp --------
T ss_pred CCCCccee
Confidence 88755443
No 117
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.79 E-value=4.4e-19 Score=162.03 Aligned_cols=126 Identities=17% Similarity=0.146 Sum_probs=70.2
Q ss_pred hhHHHHHhhhhHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003425 151 SFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYL 230 (821)
Q Consensus 151 ~f~iDlis~lP~~~~~~~~~~~~~~~~l~llrl~rl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~h~~ac~~~~i 230 (821)
+-++|+++++|+ +|.+|++|++|++ +.|....+ ... .+...++.+++++.++++++|++
T Consensus 15 ~~~~dli~~lp~------------lr~lRllRi~ril-l~r~~~~l------~~~--~~~~~~~~~~~~i~~~a~~~~~~ 73 (155)
T 2a9h_A 15 EGRGRLIKHMPP------------MLSGLLARLVKLL-LGRHGSAL------HWR--AAGAATVLLVIVLLAGSYLAVLA 73 (155)
T ss_dssp --------------------------------------------CC------HHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH------------HHHHHHHHHHHHH-HHHHHHHH------HHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 348999999996 3445555555554 33331111 111 12223333444455677777777
Q ss_pred HccCCCCCCCCceeccccCCCCCcccccccchHHHHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHH
Q 003425 231 ATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYL 310 (821)
Q Consensus 231 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~ 310 (821)
+...+.+ .+.+|.+|+||+++|+|||||||++|.|+.+++++++++++|+++++++
T Consensus 74 E~~~~~~------------------------~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~ 129 (155)
T 2a9h_A 74 ERGAPGA------------------------ALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLV 129 (155)
T ss_dssp HTTSSCS------------------------STTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCC------------------------ccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 6432111 1236999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 003425 311 IGNMTALIVKG 321 (821)
Q Consensus 311 i~~i~~~~~~~ 321 (821)
++.+++.+.+.
T Consensus 130 ~~~i~~~~~~~ 140 (155)
T 2a9h_A 130 FAAVATWFVGR 140 (155)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHHH
Confidence 99999988873
No 118
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.78 E-value=3.9e-19 Score=180.35 Aligned_cols=142 Identities=27% Similarity=0.239 Sum_probs=113.3
Q ss_pred hHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 003425 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 617 (821)
Q Consensus 538 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~ 617 (821)
.+.+++..++..|+.+.+..+...+.++ +..|.||||+|+..|+.+++++|++ |+++|.+|..|.||||+|+..|+
T Consensus 14 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~ 89 (244)
T 3ui2_A 14 EGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGS 89 (244)
T ss_dssp TTEEEEEEEESSCCCCEEEEGGGSCHHH---HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTC
T ss_pred CCccHHHHHHHcCCCccccccccccccc---ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCC
Confidence 3445555566666665554444433333 2568899999999999999999999 89999999999999998888777
Q ss_pred hHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Q 003425 618 DGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRD-YDLRTPLHVAASEGLYLMAKLLVEAGASVF 696 (821)
Q Consensus 618 ~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d-~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~ 696 (821)
.+++++|+++ |+++|.+| ..|.||||+|+..|+.+++++|+++|++++
T Consensus 90 ~~~v~~Ll~~-------------------------------ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~ 138 (244)
T 3ui2_A 90 DKCVRLLAEA-------------------------------GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE 138 (244)
T ss_dssp HHHHHHHHHT-------------------------------TCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHc-------------------------------CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 7666666554 55667676 779999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHcCC
Q 003425 697 PKDRWGNTPLDEGRMCGN 714 (821)
Q Consensus 697 ~~d~~g~t~l~~A~~~~~ 714 (821)
.+|..|+||||+|+..++
T Consensus 139 ~~d~~g~t~l~~A~~~~~ 156 (244)
T 3ui2_A 139 VEDERGLTALELAREILK 156 (244)
T ss_dssp CCCTTCCCHHHHHHHHHT
T ss_pred CCCCCCCcHHHHHHHHHh
Confidence 999999999999997543
No 119
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.76 E-value=7.2e-19 Score=155.61 Aligned_cols=106 Identities=38% Similarity=0.490 Sum_probs=55.2
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCC
Q 003425 569 DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGD 648 (821)
Q Consensus 569 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~ 648 (821)
|.+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+
T Consensus 6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll----------------------- 62 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL----------------------- 62 (115)
T ss_dssp SCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHT-----------------------
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH-----------------------
Confidence 444555555555555555555555555555555444444444444444433333333
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCH
Q 003425 649 SDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTP 705 (821)
Q Consensus 649 ~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~ 705 (821)
++|++++.+|..|.||||+|+..|+.+++++|+++|+++|.++..|.||
T Consensus 63 --------~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 63 --------AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp --------TTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred --------HcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 3334455555556666666666666666666666666666666666555
No 120
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.76 E-value=2.7e-18 Score=158.29 Aligned_cols=128 Identities=16% Similarity=0.236 Sum_probs=115.4
Q ss_pred hhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccce---EEEeCCCCcc
Q 003425 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDY---VSYLHPNSSF 462 (821)
Q Consensus 386 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~---i~~l~~G~~f 462 (821)
.++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++...++|++.+ +..+.+|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence 5688999999999999999999999999999999999999999999999999999999888998888 9999999999
Q ss_pred ccccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425 463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (821)
Q Consensus 463 Ge~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~ 513 (821)
|+.+++.+.+++++++|.++|+++.|++++|.++++.+|.+...+++.+..
T Consensus 85 G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 135 (142)
T 3mdp_A 85 GVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAA 135 (142)
T ss_dssp CGGGSSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred chHHHcCCCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988887764
No 121
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.75 E-value=1.3e-18 Score=154.04 Aligned_cols=106 Identities=30% Similarity=0.413 Sum_probs=92.6
Q ss_pred ccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q 003425 634 EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCG 713 (821)
Q Consensus 634 ~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~ 713 (821)
.+|.||||.|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus 7 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~ 86 (115)
T 2l6b_A 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNG 86 (115)
T ss_dssp CSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCC
Confidence 34566666666667777777777778888999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhccccccccCCCCCCcc
Q 003425 714 NKNLIKLLEDAKSTQLLEFPHGFQDT 739 (821)
Q Consensus 714 ~~~i~~~Ll~~~a~~~~~~~~~~~~~ 739 (821)
+.+++++|+++|++++..+..+.++.
T Consensus 87 ~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 87 HHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp CHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred CHHHHHHHHHcCCCCCcCCccccccc
Confidence 99999999999999999988877653
No 122
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.74 E-value=1.1e-17 Score=155.69 Aligned_cols=128 Identities=19% Similarity=0.299 Sum_probs=122.5
Q ss_pred hhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccc
Q 003425 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (821)
Q Consensus 386 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~ 465 (821)
.++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.++++..+.+|++..+..+.+|++||+.
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 83 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL 83 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH
Confidence 56889999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred cccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425 466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (821)
Q Consensus 466 ~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~ 513 (821)
+++.+.+++++++|.++|+++.|++++|.++++++|++...++..+..
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 131 (149)
T 2pqq_A 84 SLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVAR 131 (149)
T ss_dssp GGTSCEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHH
T ss_pred HhcCCCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988877664
No 123
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.74 E-value=5.4e-18 Score=164.07 Aligned_cols=149 Identities=17% Similarity=0.182 Sum_probs=132.1
Q ss_pred HHHHHhhCcHHH----HHHHHHhhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEE
Q 003425 365 EASVLQDIPISI----RAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440 (821)
Q Consensus 365 ~~~~l~~lp~~L----~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~ 440 (821)
+..+.+.++|+| +.+.......++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 444455554443 2334445567889999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCccceEEEeCCCCccccccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (821)
Q Consensus 441 ~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~ 513 (821)
++...++|++.++..+.+|++||+.+++.+.+++++++|.++|+++.|++++|.++++++|++...+++.+..
T Consensus 93 v~~~~~~g~~~~~~~~~~G~~fGe~~~l~~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 165 (187)
T 3gyd_A 93 VIKDIPNKGIQTIAKVGAGAIIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLLQ 165 (187)
T ss_dssp EEEEETTTEEEEEEEEETTCEESHHHHHHCCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred EEEECCCCCeEEEEEccCCCeeeeHHHhCCCCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999888855443
No 124
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.74 E-value=3.8e-18 Score=161.01 Aligned_cols=127 Identities=22% Similarity=0.361 Sum_probs=118.5
Q ss_pred HhhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCc
Q 003425 382 QTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS 461 (821)
Q Consensus 382 ~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~ 461 (821)
.....++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++. ..+|++..+..+.+|++
T Consensus 33 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~~~g~~~~~~~~~~G~~ 111 (161)
T 3idb_B 33 RNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRGS 111 (161)
T ss_dssp HHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEE-EETTEEEEEEEEESCCE
T ss_pred HHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEE-cCCCCeEEEEEcCCCCE
Confidence 34456789999999999999999999999999999999999999999999999999999998 88899999999999999
Q ss_pred cccccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHH
Q 003425 462 FGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLT 509 (821)
Q Consensus 462 fGe~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~ 509 (821)
||+.+++.+.+++++++|.++|+++.|++++|.++++++|...+.++.
T Consensus 112 fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~ 159 (161)
T 3idb_B 112 FGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYE 159 (161)
T ss_dssp ECGGGGTCCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCCC--
T ss_pred echHHHHcCCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHHHHh
Confidence 999999999999999999999999999999999999999988766544
No 125
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.74 E-value=3.8e-18 Score=156.66 Aligned_cols=132 Identities=23% Similarity=0.258 Sum_probs=117.0
Q ss_pred hCcHHHHHHHHHhhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCcc
Q 003425 371 DIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTE 450 (821)
Q Consensus 371 ~lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~ 450 (821)
++|+.+|.+.......++++++++|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++. +|
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~---~g-- 81 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---EG-- 81 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE---TT--
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE---CC--
Confidence 5788888888888889999999999999999999999999999999999999999999999999999999965 44
Q ss_pred ceEEEeCCCCccccccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHH
Q 003425 451 DYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV 507 (821)
Q Consensus 451 ~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~ 507 (821)
..+..+.+|++||+.+++.+.+++++++|.++|+++.|++++|.++++++|...+..
T Consensus 82 ~~~~~~~~G~~fGe~~~l~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~~ 138 (139)
T 3ocp_A 82 VKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTE 138 (139)
T ss_dssp EEEEEECTTCEESCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHHTC--------
T ss_pred EEEEEeCCCCEeccHHHHCCCCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhhc
Confidence 378899999999999999999999999999999999999999999999999887653
No 126
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.72 E-value=2.4e-17 Score=154.18 Aligned_cols=128 Identities=14% Similarity=0.228 Sum_probs=117.6
Q ss_pred hhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccc
Q 003425 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (821)
Q Consensus 386 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~ 465 (821)
.++++++++|..++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.++++..+++|++.++..+.+|++||+.
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 90 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 90 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGG
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccH
Confidence 46788999999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred cccccCC-cceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425 466 SILCNIP-QPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (821)
Q Consensus 466 ~~~~~~~-~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~ 513 (821)
+++.+.+ +.++++|.++|+++.|++++|.++++.+|++...+++.+..
T Consensus 91 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~ 139 (154)
T 2z69_A 91 MMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST 139 (154)
T ss_dssp GGGSSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhccCCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHH
Confidence 9999998 99999999999999999999999999999999999887765
No 127
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.70 E-value=5.9e-17 Score=158.07 Aligned_cols=129 Identities=19% Similarity=0.196 Sum_probs=121.2
Q ss_pred hhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcccc
Q 003425 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE 464 (821)
Q Consensus 385 ~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe 464 (821)
+..++++++.|.+++++.+..+...++.+.|++|++|+++|++++.+|||.+|.|+++..+++|++.++.++.+|++|||
T Consensus 5 ~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge 84 (194)
T 3dn7_A 5 HTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSD 84 (194)
T ss_dssp CHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEee
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-cccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425 465 V-SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (821)
Q Consensus 465 ~-~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~ 513 (821)
. +++.+.|++++++|.++|+++.|++++|.++++.+|++...++..+..
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 134 (194)
T 3dn7_A 85 YMAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQK 134 (194)
T ss_dssp HHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred hHHHhcCCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 8 688999999999999999999999999999999999999887766654
No 128
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.70 E-value=6.7e-17 Score=141.43 Aligned_cols=95 Identities=34% Similarity=0.484 Sum_probs=86.1
Q ss_pred ccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 003425 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPL 609 (821)
Q Consensus 530 ~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL 609 (821)
......+.+|.|+||.||..|+.++++.|++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 15 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl 94 (110)
T 2zgd_A 15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAF 94 (110)
T ss_dssp -------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CcccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHH
Confidence 34556788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHH
Q 003425 610 LEAIKYGNDGAASLL 624 (821)
Q Consensus 610 ~~A~~~~~~~~v~~L 624 (821)
|+|+..|+.+++++|
T Consensus 95 ~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 95 DISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHh
Confidence 999999999999986
No 129
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.70 E-value=7.5e-17 Score=141.78 Aligned_cols=56 Identities=20% Similarity=0.298 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003425 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (821)
Q Consensus 265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~ 320 (821)
+|.+|+||+++|+|||||||++|.|+.+++++++++++|+.++++++|.+++.+.+
T Consensus 61 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~ 116 (122)
T 2ih3_C 61 TYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 116 (122)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999998855
No 130
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.68 E-value=1.4e-16 Score=158.30 Aligned_cols=126 Identities=21% Similarity=0.344 Sum_probs=118.4
Q ss_pred ccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcccccccc
Q 003425 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSIL 468 (821)
Q Consensus 389 l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~ 468 (821)
++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+++|++.++..+.+|++||+.+++
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 80 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL 80 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence 46789999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred ccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425 469 CNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (821)
Q Consensus 469 ~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~ 514 (821)
.+.|++++++|.++|+++.|++++|.++++.+|++...++..+..+
T Consensus 81 ~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 126 (216)
T 4ev0_A 81 DEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARR 126 (216)
T ss_dssp HCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888777653
No 131
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.68 E-value=1.3e-16 Score=139.65 Aligned_cols=87 Identities=37% Similarity=0.577 Sum_probs=81.8
Q ss_pred cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Q 003425 635 EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGN 714 (821)
Q Consensus 635 ~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 714 (821)
+|.|+||.|+..|+.+++++|+++|++++.+|..|.||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 23 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~ 102 (110)
T 2zgd_A 23 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGN 102 (110)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcCC
Confidence 57788888888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 003425 715 KNLIKLL 721 (821)
Q Consensus 715 ~~i~~~L 721 (821)
.+++++|
T Consensus 103 ~~~~~~L 109 (110)
T 2zgd_A 103 EDLAEIL 109 (110)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999987
No 132
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.67 E-value=1.2e-16 Score=146.22 Aligned_cols=119 Identities=18% Similarity=0.346 Sum_probs=109.2
Q ss_pred hhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEE--EeCCCCccc
Q 003425 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVS--YLHPNSSFG 463 (821)
Q Consensus 386 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~--~l~~G~~fG 463 (821)
.++++++|+|..++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|++. ..++|++.++. .+.+|++||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~-~~~~g~~~~~~~~~l~~G~~fG 83 (137)
T 1wgp_A 5 SSGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESV-TTDGGRSGFYNRSLLKEGDFCG 83 (137)
T ss_dssp SCSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEE-CCSSCSSSSSCEEECCTTCBSS
T ss_pred HHHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-EcCCCcceeeeeeeecCCCEec
Confidence 467899999999999999999999999999999999999999999999999999965 56788887766 999999999
Q ss_pred cccc---cccCC------cceEEEEecceEEEEechHhHHHHHHHhhhchH
Q 003425 464 EVSI---LCNIP------QPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGR 505 (821)
Q Consensus 464 e~~~---~~~~~------~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~ 505 (821)
|.++ +.+.+ ++++++|.++|+++.|++++|.++++++|++..
T Consensus 84 e~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 84 DELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp THHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 9995 77775 579999999999999999999999999998764
No 133
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.67 E-value=4.5e-18 Score=176.00 Aligned_cols=213 Identities=15% Similarity=0.172 Sum_probs=136.8
Q ss_pred cccCCcCeEEcCCChhHHHHHHHHHHHHHHHhhhcceeeee--ecCCCcCeehhHHHHHHHHHHhHhheeeEEEEeCCce
Q 003425 57 FRHFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGF--FRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTY 134 (821)
Q Consensus 57 ~~~~~~~~~~~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f--~~~~~~~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~~ 134 (821)
+|.+.+..+.+ ..++.+++++++.+++.+.+...- .......+..+|.++.++|++|+++++..
T Consensus 19 ~r~~~~~i~~~------~~f~~~i~~li~l~~i~~~~~~~~~~~~~~~~~l~~~e~~~~~iF~~E~~lrl~~-------- 84 (285)
T 3rvy_A 19 MYLRITNIVES------SFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYV-------- 84 (285)
T ss_dssp CHHHHHHHHTS------HHHHHHHHHHHHHHHHHHHHTTCTTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHcC------HHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 44455554433 356777777777776665544311 11222346789999999999999997633
Q ss_pred EEeeccHHHHHHHhhh-hhHHHHHhhhhHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhhhhhHh-hhHHHHHHHHH
Q 003425 135 RLICKRTPIALRYLRS-SFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIR-INYMFSRIVKL 212 (821)
Q Consensus 135 ~~v~~~~~I~~~Ylk~-~f~iDlis~lP~~~~~~~~~~~~~~~~l~llrl~rl~r~~~~~~~~~~~~~-~~~~~~~~~~~ 212 (821)
.+ ++|+++ |.++|+++++|..+. .... ++.+|++|++|++|+.+....++.... +......+..+
T Consensus 85 ----~~----~~y~~~~wn~~Dl~~v~~~~i~--~~~~---~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~~~~~l~~~ 151 (285)
T 3rvy_A 85 ----HR----ISFFKDPWSLFDFFVVAISLVP--TSSG---FEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSV 151 (285)
T ss_dssp ----TG----GGGGGCHHHHHHHHHHHHHHSC--SSSS---CTHHHHHGGGGGGHHHHSSTTHHHHHHHHHHHGGGGHHH
T ss_pred ----Hh----HHHHcCChHHhHHHHHHHHHHc--ccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 579988 679999999886432 1222 344555555555555554444433222 12233334555
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCCCCCCceeccccCCCCCcccccccchHHHHHHHHHHHHHHhhccccC-ccc-cCCh
Q 003425 213 IAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYG-DVH-AVNL 290 (821)
Q Consensus 213 ~~~~l~~~h~~ac~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyG-di~-p~t~ 290 (821)
++.++++.-++|++-+.+..... .+.|.++..|+||+++|+||+||| |+. |.+.
T Consensus 152 ~~~~~~~~~~fa~~g~~~f~~~~------------------------~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~ 207 (285)
T 3rvy_A 152 IALMTLFFYIFAIMATQLFGERF------------------------PEWFGTLGESFYTLFQVMTLESWSMGIVRPLME 207 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTC------------------------HHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhCccc------------------------ccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 55555555566655444432100 122567999999999999999999 986 7766
Q ss_pred hH----HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003425 291 RE----MVFIMIYVSFDMILGAYLIGNMTALIVK 320 (821)
Q Consensus 291 ~e----~~~~~~~~i~g~~~~a~~i~~i~~~~~~ 320 (821)
.+ ..+++++++.|+++.++++|.+.+.+..
T Consensus 208 ~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~ 241 (285)
T 3rvy_A 208 VYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAI 241 (285)
T ss_dssp TCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 7889999999999999999999988866
No 134
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.67 E-value=1.8e-16 Score=159.43 Aligned_cols=129 Identities=18% Similarity=0.261 Sum_probs=121.3
Q ss_pred hhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccc
Q 003425 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (821)
Q Consensus 386 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~ 465 (821)
.++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+++|++.++..+.+|++||+.
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 84 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGET 84 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTT
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeH
Confidence 46788999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred cccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425 466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (821)
Q Consensus 466 ~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~ 514 (821)
+++.+.|++++++|.++|+++.|++++|.++++.+|++...+++.+..+
T Consensus 85 ~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 133 (231)
T 3e97_A 85 AVLAHQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARR 133 (231)
T ss_dssp TTTCCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHhCCCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988877653
No 135
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.67 E-value=1.7e-16 Score=160.34 Aligned_cols=130 Identities=16% Similarity=0.229 Sum_probs=123.8
Q ss_pred hhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcccc
Q 003425 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE 464 (821)
Q Consensus 385 ~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe 464 (821)
..++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+++|++.++..+.+|++||+
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~ 88 (237)
T 3fx3_A 9 QKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFGE 88 (237)
T ss_dssp HHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEECH
T ss_pred HHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEech
Confidence 45788999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred ccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425 465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (821)
Q Consensus 465 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~ 514 (821)
.+++.+.|++++++|.++|+++.|++++|.++++.+|++...++..+..+
T Consensus 89 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 138 (237)
T 3fx3_A 89 AVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGH 138 (237)
T ss_dssp HHHHHTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888777653
No 136
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.66 E-value=2e-16 Score=142.09 Aligned_cols=92 Identities=18% Similarity=0.290 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH-HHhCCC
Q 003425 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKY-INRNRL 343 (821)
Q Consensus 265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~-m~~~~l 343 (821)
.|++|+||+++|||||||||++|.|+.|++++++++++|+++++++++.+++.+......++.+++.+...+. .+..++
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDL 122 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC--------------------
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4899999999999999999999999999999999999999999999999999887644333333333333333 333455
Q ss_pred CHHHHHHHHHHHH
Q 003425 344 GRDIRDQIIGHLR 356 (821)
Q Consensus 344 p~~l~~ri~~y~~ 356 (821)
+++.+..++++++
T Consensus 123 ~~~~i~~l~~~l~ 135 (137)
T 4h33_A 123 TKEEIAVVEQFLT 135 (137)
T ss_dssp -------------
T ss_pred cHHHHHHHHHHHh
Confidence 6666666665553
No 137
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.66 E-value=4.5e-16 Score=155.19 Aligned_cols=127 Identities=15% Similarity=0.118 Sum_probs=120.3
Q ss_pred hhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCc--ccc
Q 003425 387 PYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS--FGE 464 (821)
Q Consensus 387 ~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~--fGe 464 (821)
++++++|+|.+++++.+..+...++.+.|++|++|+++|+.++.+|||.+|.|+++..+++|++.++..+.+|++ ||+
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~ 82 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA 82 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhH
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred ccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425 465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (821)
Q Consensus 465 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~ 513 (821)
.+++.+.|++++++|.++|+++.|++++|.++++.+|++...++..+..
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 131 (220)
T 3dv8_A 83 SCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMAT 131 (220)
T ss_dssp GGGCTTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHhCCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988776655
No 138
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.66 E-value=3.6e-16 Score=157.11 Aligned_cols=130 Identities=17% Similarity=0.142 Sum_probs=123.1
Q ss_pred hhhhccccccccCCCHHHHHHHHHh--cccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcc
Q 003425 385 YLPYIEKVPLFKGCSSEFINQIVIR--LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (821)
Q Consensus 385 ~~~~l~~~~~f~~~~~~~l~~l~~~--~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~f 462 (821)
...++.++|+|.+++++.+..++.. ++.+.|++|++|+++|+.++.+|||.+|.|+++..+++|++.++..+.+|++|
T Consensus 16 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~f 95 (232)
T 1zyb_A 16 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLI 95 (232)
T ss_dssp HHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEE
T ss_pred HHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCee
Confidence 4577899999999999999999998 99999999999999999999999999999999998899999999999999999
Q ss_pred ccccccccCC-cceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425 463 GEVSILCNIP-QPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (821)
Q Consensus 463 Ge~~~~~~~~-~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~ 514 (821)
|+.+++.+.+ ++++++|.++|+++.|++++|.++++.+|++...+++.+..+
T Consensus 96 G~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~ 148 (232)
T 1zyb_A 96 EPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNR 148 (232)
T ss_dssp CGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHH
T ss_pred eehHHhCCCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 9999999988 999999999999999999999999999999999988776653
No 139
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.66 E-value=1.2e-16 Score=160.28 Aligned_cols=128 Identities=20% Similarity=0.327 Sum_probs=122.3
Q ss_pred hhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccc
Q 003425 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (821)
Q Consensus 386 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~ 465 (821)
.++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+++|++.++..+.+|++||+.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 84 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL 84 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCH
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeH
Confidence 45788999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred cccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425 466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (821)
Q Consensus 466 ~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~ 513 (821)
+++.+.|++++++|.++|+++.|++++|.++++.+|++...+++.+..
T Consensus 85 ~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 132 (227)
T 3d0s_A 85 SIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLAR 132 (227)
T ss_dssp HHHSCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHcCCCCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988877665
No 140
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.66 E-value=2.6e-16 Score=144.14 Aligned_cols=123 Identities=22% Similarity=0.312 Sum_probs=114.0
Q ss_pred hhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcccc
Q 003425 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE 464 (821)
Q Consensus 385 ~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe 464 (821)
..++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.++++... + ..+.+|++||+
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~----~---~~~~~G~~~G~ 81 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN----P---VELGPGAFFGE 81 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS----C---EEECTTCEECH
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC----c---ceECCCCEeee
Confidence 3467899999999999999999999999999999999999999999999999999998632 2 46899999999
Q ss_pred ccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425 465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (821)
Q Consensus 465 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~ 514 (821)
.+++.+.+++++++|.++|+++.|++++|.++++++|++...+++.+..+
T Consensus 82 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r 131 (138)
T 1vp6_A 82 MALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALER 131 (138)
T ss_dssp HHHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hHhccCCCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998877764
No 141
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.65 E-value=5.4e-16 Score=144.91 Aligned_cols=118 Identities=24% Similarity=0.368 Sum_probs=108.2
Q ss_pred hhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcccc
Q 003425 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE 464 (821)
Q Consensus 385 ~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe 464 (821)
..++++++++|.+++++.+..++..++...|++|++|+++|+.++.+|||.+|.|+++. +|. .+..+.+|++||+
T Consensus 36 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~~~--~~~~~~~G~~fGe 110 (154)
T 3pna_A 36 LAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NNE--WATSVGEGGSFGE 110 (154)
T ss_dssp HHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE---TTE--EEEEECTTCEECC
T ss_pred HHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE---CCE--EEEEecCCCEeee
Confidence 45688899999999999999999999999999999999999999999999999999987 343 6788999999999
Q ss_pred ccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHH
Q 003425 465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV 507 (821)
Q Consensus 465 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~ 507 (821)
.+++.+.+++++++|.++|+++.|++++|.++++++|...+.+
T Consensus 111 ~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~~ 153 (154)
T 3pna_A 111 LALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKM 153 (154)
T ss_dssp HHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC---
T ss_pred hHhhcCCCcceEEEECcceEEEEEeHHHHHHHHHhChHHHhhc
Confidence 9999999999999999999999999999999999999876654
No 142
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.64 E-value=2.1e-16 Score=158.47 Aligned_cols=129 Identities=14% Similarity=0.221 Sum_probs=122.9
Q ss_pred hhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcccc
Q 003425 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE 464 (821)
Q Consensus 385 ~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe 464 (821)
..++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+++|++.++..+++|++||+
T Consensus 7 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~ 86 (227)
T 3dkw_A 7 HQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAE 86 (227)
T ss_dssp SHHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESC
T ss_pred HHHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeee
Confidence 34678999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred ccccccCC-cceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425 465 VSILCNIP-QPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (821)
Q Consensus 465 ~~~~~~~~-~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~ 513 (821)
.+++.+.| ++++++|.++|+++.|++++|.++++.+|.+...++..+..
T Consensus 87 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 136 (227)
T 3dkw_A 87 AMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST 136 (227)
T ss_dssp TTTTTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHH
T ss_pred HHhcCCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999999999999999988877765
No 143
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.63 E-value=7.9e-16 Score=154.76 Aligned_cols=125 Identities=13% Similarity=0.130 Sum_probs=114.6
Q ss_pred cccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccc
Q 003425 390 EKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILC 469 (821)
Q Consensus 390 ~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~ 469 (821)
.++|+|.+++++.+..++..++.+.|+||++|+++|+.++.+|||.+|.|+++..+++|++.++..+.+|++||+.+++.
T Consensus 13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~ 92 (232)
T 2gau_A 13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFA 92 (232)
T ss_dssp GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHH
T ss_pred cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhC
Confidence 36799999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred cCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425 470 NIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (821)
Q Consensus 470 ~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~ 514 (821)
+.|++++++|.++|+++.|++++|.++++.+|++...++..+..+
T Consensus 93 ~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 137 (232)
T 2gau_A 93 EETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKE 137 (232)
T ss_dssp TSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988877653
No 144
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.63 E-value=1.5e-15 Score=152.45 Aligned_cols=128 Identities=13% Similarity=0.198 Sum_probs=110.7
Q ss_pred hhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccc
Q 003425 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (821)
Q Consensus 386 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~ 465 (821)
...+++.++|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+++|++.++..+.+|++||+.
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 89 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEM 89 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCG
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEeh
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC-CcceEEEEecceEEEEechHhHHHHHHHh-----hhchHHHHHHHhc
Q 003425 466 SILCNI-PQPYTVQVCELCRLLRIDKQSFTNIIDIY-----FCDGRKVLTNLLQ 513 (821)
Q Consensus 466 ~~~~~~-~~~~~~~a~~~~~~~~i~~~~f~~~l~~~-----p~~~~~~l~~~l~ 513 (821)
+++.+. |++++++|.++|+++.|++++|.++++++ |++...++..+..
T Consensus 90 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~ 143 (230)
T 3iwz_A 90 GLFIESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSK 143 (230)
T ss_dssp GGTSCCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHH
T ss_pred hhhcCCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHH
Confidence 998875 79999999999999999999999999999 9998888877665
No 145
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.63 E-value=1.8e-15 Score=138.49 Aligned_cols=112 Identities=20% Similarity=0.277 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCceeccccCCCCCcccccccchHHHHHHHHHHHHHHhhccccCccccC
Q 003425 209 IVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAV 288 (821)
Q Consensus 209 ~~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyGdi~p~ 288 (821)
.+..++.++++.+++++++|.... + | .|.+|+||+++|+|||||||++|.
T Consensus 26 ~~~~~~~~~~~~~~~g~~~~~~~e-------~--~---------------------~~~~a~y~~~~t~tTvGyGd~~p~ 75 (148)
T 3vou_A 26 EFQVLFVLTFLTLTSGTIFYSTVE-------G--L---------------------RPLDALYFSVVTLTTVGDGNFSPQ 75 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS-------C--C---------------------CHHHHHHHHHHHHTTCCCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-------C--C---------------------CHHHHHHHHHHHHHccCCCCCCCC
Confidence 344556666667777877776431 1 2 488999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHH------Hhc-----CchhHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 003425 289 NLREMVFIMIYVSFDMILGAYLIGNMTAL------IVK-----GSKTEKFRDKMTDLMKYINRNRLGRDIRDQ 350 (821)
Q Consensus 289 t~~e~~~~~~~~i~g~~~~a~~i~~i~~~------~~~-----~~~~~~~~~~~~~~~~~m~~~~lp~~l~~r 350 (821)
|..+++++++++++|+.++++.++.++.. ... .....+..+++++++++++.++.|++|+.|
T Consensus 76 t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 76 TDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAIEKKLAEHSRQGSLVPR 148 (148)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence 99999999999999999999999998762 211 122334567788999999999999999875
No 146
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.62 E-value=1.5e-15 Score=161.85 Aligned_cols=128 Identities=17% Similarity=0.297 Sum_probs=120.7
Q ss_pred hhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcccc
Q 003425 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE 464 (821)
Q Consensus 385 ~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe 464 (821)
..++++++|+|++++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+.+|++ ++..+.+|++|||
T Consensus 11 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~~~~~~~G~~fGe 89 (333)
T 4ava_A 11 RVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-IIARALPGMIVGE 89 (333)
T ss_dssp CHHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-EEEEECTTCEESH
T ss_pred hHHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-EEEEecCCCEeeH
Confidence 346789999999999999999999999999999999999999999999999999999998888887 8899999999999
Q ss_pred ccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425 465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (821)
Q Consensus 465 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~ 514 (821)
.+++.+.|++++++|.++|+++.|++++|.+++ ++|.+...+++.+...
T Consensus 90 ~~l~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~ 138 (333)
T 4ava_A 90 IALLRDSPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQR 138 (333)
T ss_dssp HHHHHTCBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHH
T ss_pred HHhcCCCCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 9999999988777653
No 147
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.62 E-value=1.2e-15 Score=159.76 Aligned_cols=142 Identities=23% Similarity=0.243 Sum_probs=128.1
Q ss_pred HHHhhCcHHHHHHHHHhhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeecc
Q 003425 367 SVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEE 446 (821)
Q Consensus 367 ~~l~~lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~ 446 (821)
....++|+..|.+...+...++++++++|++++++.+..|+..++.+.|++|++|+++|+.++.+|||.+|.|+++.
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~--- 95 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--- 95 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE---
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE---
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred CCccceEEEeCCCCccccccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425 447 NGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (821)
Q Consensus 447 ~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~ 513 (821)
+| ..+..+.+|++|||.+++.+.|++++++|.++|+++.|++++|.+++..+|.........++.
T Consensus 96 ~g--~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l~ 160 (299)
T 3shr_A 96 EG--VKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLK 160 (299)
T ss_dssp TT--EEEEEECTTCEESCSGGGTTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CC--EEEEEeCCCCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHHh
Confidence 34 468899999999999999999999999999999999999999999999999776665555544
No 148
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-16 Score=144.52 Aligned_cols=125 Identities=18% Similarity=0.258 Sum_probs=109.2
Q ss_pred HHHHHHHHHhhhhhhccccccccCCCHHHHHHHHHhccccccc-ccCeEEccCCccCeEEEEEeeEEEEEeeccCCccce
Q 003425 374 ISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFL-PGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDY 452 (821)
Q Consensus 374 ~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~-~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~ 452 (821)
|+.|.+.......++++++++|..++++.+..++..++.+.|. +|++|+++|+.++.+|||.+|.|+++. .+|++
T Consensus 3 p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~~g~~-- 78 (134)
T 2d93_A 3 SGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH--PDGKV-- 78 (134)
T ss_dssp CSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC--SSSCE--
T ss_pred hhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc--CCCcE--
Confidence 3334444444455678899999999999999999999999999 999999999999999999999999985 55654
Q ss_pred EEEeCCCCccccccccccCCcceEE-EEecceEEEEechHhHHHHHHHhhhc
Q 003425 453 VSYLHPNSSFGEVSILCNIPQPYTV-QVCELCRLLRIDKQSFTNIIDIYFCD 503 (821)
Q Consensus 453 i~~l~~G~~fGe~~~~~~~~~~~~~-~a~~~~~~~~i~~~~f~~~l~~~p~~ 503 (821)
..+.+|++||+.+++.+.++.+++ +|.++|+++.|++++|.++++.++..
T Consensus 79 -~~l~~G~~fG~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~ 129 (134)
T 2d93_A 79 -ENLFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVEKS 129 (134)
T ss_dssp -EEECTTCEESCCSSSCCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCSSS
T ss_pred -EEecCCCccChhHhcCCCcceeEEEEEecceEEEEEeHHHHHHHHHHHHhc
Confidence 558999999999999999999999 99999999999999999999877654
No 149
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.60 E-value=1.5e-15 Score=159.15 Aligned_cols=130 Identities=22% Similarity=0.334 Sum_probs=123.1
Q ss_pred hhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeec-cCCccceEEEeCCCCccc
Q 003425 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIE-ENGTEDYVSYLHPNSSFG 463 (821)
Q Consensus 385 ~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~-~~g~~~~i~~l~~G~~fG 463 (821)
...+++++++|..++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++... .+|++..+..+++|++||
T Consensus 155 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~fG 234 (299)
T 3shr_A 155 YMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFG 234 (299)
T ss_dssp HHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEEC
T ss_pred HHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEeC
Confidence 4567888999999999999999999999999999999999999999999999999999876 688888999999999999
Q ss_pred cccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425 464 EVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (821)
Q Consensus 464 e~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~ 514 (821)
|.+++.+.|++++++|.++|+++.|++++|.++++.+|++...+++.+..+
T Consensus 235 e~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r 285 (299)
T 3shr_A 235 EKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAK 285 (299)
T ss_dssp GGGGSSSEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred hHHHhCCCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999887764
No 150
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.60 E-value=4.4e-15 Score=134.59 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCceeccccCCCCCcccccccchHHHHHHHHHHHHHHhhccccCcccc
Q 003425 208 RIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHA 287 (821)
Q Consensus 208 ~~~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyGdi~p 287 (821)
.++..++.++++.++.+++++.++...+. +.. ..|.+|+||+++|+|||||||++|
T Consensus 7 ~~~~~~~~~~~~~~~~a~~~~~~e~~~~~---~~~---------------------~~~~~a~yf~~~T~tTvGyGd~~P 62 (139)
T 3eff_K 7 AAGAATVLLVIVLLAGSYLAVLAERGAPG---AQL---------------------ITYPRALWWSVETATTVGYGDLYP 62 (139)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTSSCTT---CCC---------------------CCHHHHHHHHHHHHTTCCCSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC---ccc---------------------CCHHHHHHHHheeeecccCCCCcC
Confidence 45556666677777788888877643211 111 158999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003425 288 VNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (821)
Q Consensus 288 ~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~ 320 (821)
.|+.+++++++++++|+++++++++.+++.+.+
T Consensus 63 ~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~ 95 (139)
T 3eff_K 63 VTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 95 (139)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887754
No 151
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.59 E-value=4.5e-15 Score=146.72 Aligned_cols=121 Identities=17% Similarity=0.264 Sum_probs=111.4
Q ss_pred ccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccC-
Q 003425 393 PLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI- 471 (821)
Q Consensus 393 ~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~- 471 (821)
++++.++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.++++..+++|++.++..+.+|++||+.+++.+.
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~ 81 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ 81 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTC
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCC
Confidence 4677899999999999999999999999999999999999999999999998899999999999999999999999887
Q ss_pred CcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425 472 PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (821)
Q Consensus 472 ~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~ 513 (821)
|++++++|.++|+++.|++++|.++++.+|++...+++.+..
T Consensus 82 ~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 123 (210)
T 3ryp_A 82 ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR 123 (210)
T ss_dssp BCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred CceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHH
Confidence 899999999999999999999999999999999988877665
No 152
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.58 E-value=8.9e-15 Score=144.18 Aligned_cols=116 Identities=15% Similarity=0.265 Sum_probs=108.7
Q ss_pred CCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccC----Cc
Q 003425 398 CSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI----PQ 473 (821)
Q Consensus 398 ~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~----~~ 473 (821)
++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+++|++.++..+.+|++||+.+++.+. |+
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~ 80 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQER 80 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBC
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCc
Confidence 58899999999999999999999999999999999999999999998899999999999999999999999888 89
Q ss_pred ceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425 474 PYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (821)
Q Consensus 474 ~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~ 513 (821)
+++++|.++|+++.|++++|.++++++|.+...++..+..
T Consensus 81 ~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 120 (207)
T 2oz6_A 81 SAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMAD 120 (207)
T ss_dssp CSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888877664
No 153
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.56 E-value=1.6e-14 Score=150.62 Aligned_cols=128 Identities=18% Similarity=0.250 Sum_probs=116.3
Q ss_pred hhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCC-ccceEEEeCCCCccc
Q 003425 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG-TEDYVSYLHPNSSFG 463 (821)
Q Consensus 385 ~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g-~~~~i~~l~~G~~fG 463 (821)
...++.++++|..+++..+..++..++...|.+|++|+++|+.++.+|+|.+|.|+++....+| ++..+..+++|++||
T Consensus 155 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fG 234 (291)
T 2qcs_B 155 YEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFG 234 (291)
T ss_dssp HHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEEC
T ss_pred HHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEec
Confidence 3456778899999999999999999999999999999999999999999999999999766655 457899999999999
Q ss_pred cccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHh
Q 003425 464 EVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLL 512 (821)
Q Consensus 464 e~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l 512 (821)
|.+++.+.|++++++|.++|+++.|++++|.+++..+|++....++...
T Consensus 235 e~~ll~~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~~ 283 (291)
T 2qcs_B 235 EIALLMNRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYN 283 (291)
T ss_dssp SGGGTCCCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHHH
T ss_pred HHHHcCCCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998776665543
No 154
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.56 E-value=4.2e-15 Score=162.19 Aligned_cols=124 Identities=23% Similarity=0.366 Sum_probs=116.3
Q ss_pred HhhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCc
Q 003425 382 QTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS 461 (821)
Q Consensus 382 ~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~ 461 (821)
.....+.++++++|++++++.+..|+..++.+.|++|++|+++|+.++.+|+|.+|.|+++. ..+|++..+..+.+|++
T Consensus 140 ~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~-~~~G~~~~v~~l~~G~~ 218 (416)
T 3tnp_B 140 RNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRGS 218 (416)
T ss_dssp HHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEE-ECSSCEEEEEEEESCCE
T ss_pred HHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEE-ecCCCEEEEEEecCCCE
Confidence 44556789999999999999999999999999999999999999999999999999999998 77888999999999999
Q ss_pred cccccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHH
Q 003425 462 FGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRK 506 (821)
Q Consensus 462 fGe~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~ 506 (821)
|||.+++.+.|+.++++|.++|+++.|++++|.+++..+|.....
T Consensus 219 fGe~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~ 263 (416)
T 3tnp_B 219 FGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRK 263 (416)
T ss_dssp ECGGGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSS
T ss_pred EeeHHHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcchhHHHH
Confidence 999999999999999999999999999999999999999876543
No 155
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.54 E-value=8.4e-15 Score=144.97 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=108.5
Q ss_pred cccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccC
Q 003425 392 VPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI 471 (821)
Q Consensus 392 ~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~ 471 (821)
-|.|...++.....+...++.+.|++|++|+.+|+.++.+|||.+|.|+++..+++|++.++..+.+|++||+.+++.+.
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~ 83 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSE 83 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSS
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcCC
Confidence 47888889999999999999999999999999999999999999999999998899999999999999999999988876
Q ss_pred -CcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425 472 -PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (821)
Q Consensus 472 -~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~ 514 (821)
++.++++|.++|+++.|++++|.++++.+|++...++..+..+
T Consensus 84 ~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~ 127 (213)
T 1o5l_A 84 PRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEH 127 (213)
T ss_dssp CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999888877653
No 156
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.54 E-value=2.1e-14 Score=146.80 Aligned_cols=119 Identities=16% Similarity=0.263 Sum_probs=109.4
Q ss_pred ccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccC-Cc
Q 003425 395 FKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI-PQ 473 (821)
Q Consensus 395 f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~-~~ 473 (821)
...++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+++|++.++..+.+|++||+.+++.+. ++
T Consensus 54 ~~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~~~ 133 (260)
T 3kcc_A 54 GKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 133 (260)
T ss_dssp -----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBC
T ss_pred cCCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCCCC
Confidence 35689999999999999999999999999999999999999999999998899999999999999999999999888 89
Q ss_pred ceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425 474 PYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (821)
Q Consensus 474 ~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~ 513 (821)
+++++|.++|+++.|++++|.++++.+|++...++..+..
T Consensus 134 ~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~ 173 (260)
T 3kcc_A 134 SAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR 173 (260)
T ss_dssp CSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred ceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888877665
No 157
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.53 E-value=8.4e-15 Score=145.87 Aligned_cols=121 Identities=14% Similarity=0.142 Sum_probs=113.9
Q ss_pred hhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccc
Q 003425 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (821)
Q Consensus 386 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~ 465 (821)
..+++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++ ..++|++.++..+.+|++||+
T Consensus 3 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~~G~- 80 (220)
T 2fmy_A 3 QMRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVY-LAYEDKEFTLAILEAGDIFCT- 80 (220)
T ss_dssp TTCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEE-EECSSCEEEEEEEETTCEEES-
T ss_pred hhhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEeCC-
Confidence 467899999999999999999999999999999999999999999999999999995 788899999999999999998
Q ss_pred cccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425 466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (821)
Q Consensus 466 ~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~ 514 (821)
|++++++|.++|+++.|++++|.++++.+|++...++..+..+
T Consensus 81 ------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~ 123 (220)
T 2fmy_A 81 ------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDL 123 (220)
T ss_dssp ------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred ------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999888876653
No 158
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.53 E-value=1.6e-14 Score=157.54 Aligned_cols=130 Identities=17% Similarity=0.310 Sum_probs=112.9
Q ss_pred hhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccC------CccceEEEe
Q 003425 383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN------GTEDYVSYL 456 (821)
Q Consensus 383 ~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~------g~~~~i~~l 456 (821)
..+..+++++++|..++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++....+ |++..+..+
T Consensus 263 ~~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l 342 (416)
T 3tnp_B 263 KMYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARC 342 (416)
T ss_dssp SSSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEE
T ss_pred HHHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEe
Confidence 35667889999999999999999999999999999999999999999999999999999987665 888899999
Q ss_pred CCCCccccccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHh
Q 003425 457 HPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLL 512 (821)
Q Consensus 457 ~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l 512 (821)
++|++|||.+++.+.|++++++|.++|+++.|++++|.+++..+|++.+..+..+.
T Consensus 343 ~~G~~fGE~all~~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~~~ 398 (416)
T 3tnp_B 343 FRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYE 398 (416)
T ss_dssp CTTCEESGGGGTCCSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC-----
T ss_pred CCCCEecHHHHhCCCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987666554443
No 159
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.53 E-value=3.7e-14 Score=147.86 Aligned_cols=127 Identities=23% Similarity=0.364 Sum_probs=117.1
Q ss_pred hhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcc
Q 003425 383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (821)
Q Consensus 383 ~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~f 462 (821)
....++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++. +| ..+..+.+|++|
T Consensus 35 ~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~g--~~~~~l~~G~~f 109 (291)
T 2qcs_B 35 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NN--EWATSVGEGGSF 109 (291)
T ss_dssp HHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE---TT--EEEEEECTTCEE
T ss_pred HHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE---CC--eEEEEcCCCCcc
Confidence 3456788999999999999999999999999999999999999999999999999999987 44 468899999999
Q ss_pred ccccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425 463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (821)
Q Consensus 463 Ge~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~ 514 (821)
||.+++.+.|++++++|.++|+++.|++++|.+++..+|.....++..++..
T Consensus 110 Ge~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (291)
T 2qcs_B 110 GELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSK 161 (291)
T ss_dssp CGGGGTCCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHhcCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999988877766653
No 160
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.53 E-value=1.2e-14 Score=162.67 Aligned_cols=142 Identities=20% Similarity=0.224 Sum_probs=130.1
Q ss_pred CcHHHHHHHHHhhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCc--
Q 003425 372 IPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGT-- 449 (821)
Q Consensus 372 lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~-- 449 (821)
.|+..|.+.......+.++++++|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++....+|+
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~ 106 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD 106 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence 466777777777778899999999999999999999999999999999999999999999999999999998888885
Q ss_pred cceEEEeCCCCccccccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425 450 EDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (821)
Q Consensus 450 ~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~ 514 (821)
+..+..+.+|++||+.+ +.+.|++++++|.++|+++.|++++|.++++.+|.+...++..+..+
T Consensus 107 ~~~~~~~~~G~~fGe~~-l~~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~~~~~~~ 170 (469)
T 1o7f_A 107 AVTICTLGIGTAFGESI-LDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLLAPPYGV 170 (469)
T ss_dssp CEEEEEECTTCEECGGG-GGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTSCTTTSC
T ss_pred ceEEEEccCCCCcchhh-hCCCCccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 47899999999999999 99999999999999999999999999999999999888876655543
No 161
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.53 E-value=1.6e-14 Score=156.00 Aligned_cols=127 Identities=20% Similarity=0.269 Sum_probs=115.9
Q ss_pred hhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCc-cceEEEeCCCCccc
Q 003425 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGT-EDYVSYLHPNSSFG 463 (821)
Q Consensus 385 ~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~-~~~i~~l~~G~~fG 463 (821)
+..+++++++|..+++..+..++..++...|.+|++|+++|+.++.+|||.+|.|+++....+|+ +..+..+++|++||
T Consensus 246 ~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~fG 325 (381)
T 4din_B 246 YEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFG 325 (381)
T ss_dssp HHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCEEC
T ss_pred HHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEec
Confidence 44677889999999999999999999999999999999999999999999999999998766554 56689999999999
Q ss_pred cccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHH
Q 003425 464 EVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNL 511 (821)
Q Consensus 464 e~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~ 511 (821)
|.+++.+.||+++++|.++|+++.|++++|.+++..+|++.+..++..
T Consensus 326 e~all~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~ 373 (381)
T 4din_B 326 EIALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRY 373 (381)
T ss_dssp TTGGGSCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHH
T ss_pred hHHHhCCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998877665443
No 162
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.6e-14 Score=146.55 Aligned_cols=124 Identities=27% Similarity=0.352 Sum_probs=112.5
Q ss_pred hhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcccc
Q 003425 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE 464 (821)
Q Consensus 385 ~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe 464 (821)
..++++++++|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++. +|+. +..+.+|++|||
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~---~~~~--~~~~~~g~~fGe 79 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV---NDNK--VNSSGPGSSFGE 79 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES---TTSC--CEEECTTCEECH
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE---CCEE--EEecCCCCeeeh
Confidence 35678899999999999999999999999999999999999999999999999999986 3433 688999999999
Q ss_pred ccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425 465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (821)
Q Consensus 465 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~ 513 (821)
.+++.+.|++++++|.++|.++.|++++|.+++..+|.....+...++.
T Consensus 80 ~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (246)
T 3of1_A 80 LALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLK 128 (246)
T ss_dssp HHHHHTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHHH
T ss_pred hHHhcCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999877666555443
No 163
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.52 E-value=2.3e-14 Score=145.47 Aligned_cols=117 Identities=19% Similarity=0.379 Sum_probs=107.6
Q ss_pred hhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcccc
Q 003425 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE 464 (821)
Q Consensus 385 ~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe 464 (821)
...+++++++|..++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++.... . .+..+.+|++|||
T Consensus 123 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~---~-~~~~l~~g~~fGe 198 (246)
T 3of1_A 123 YDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQ---G-VINKLKDHDYFGE 198 (246)
T ss_dssp SHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTT---E-EEEEEETTCEECH
T ss_pred HHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCC---c-eEEEcCCCCcccH
Confidence 44667888999999999999999999999999999999999999999999999999987332 2 7889999999999
Q ss_pred ccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchH
Q 003425 465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGR 505 (821)
Q Consensus 465 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~ 505 (821)
.+++.+.|++++++|.++|+++.|++++|.+++..+|++.+
T Consensus 199 ~~~~~~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~ 239 (246)
T 3of1_A 199 VALLNDLPRQATVTATKRTKVATLGKSGFQRLLGPAVDVLK 239 (246)
T ss_dssp HHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHH
T ss_pred HHHhCCCCcccEEEECCCEEEEEEeHHHHHHHhccHHHHHh
Confidence 99999999999999999999999999999999999887643
No 164
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.50 E-value=1.5e-14 Score=144.30 Aligned_cols=119 Identities=12% Similarity=0.092 Sum_probs=111.7
Q ss_pred hccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccc
Q 003425 388 YIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSI 467 (821)
Q Consensus 388 ~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~ 467 (821)
+++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++ ..++|++.++..+.+|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~fG---- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVY-LVGEEREISLFYLTSGDMFC---- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEE-EEETTEEEEEEEEETTCEEE----
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEec----
Confidence 4678999999999999999999999999999999999999999999999999997 78899999999999999999
Q ss_pred cccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425 468 LCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (821)
Q Consensus 468 ~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~ 514 (821)
.+++++++|.++|+++.|++++|.++++.+|.+...++..+..+
T Consensus 76 ---~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 119 (222)
T 1ft9_A 76 ---MHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRA 119 (222)
T ss_dssp ---SCSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred ---CCCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999988777653
No 165
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.50 E-value=4.7e-14 Score=152.36 Aligned_cols=126 Identities=25% Similarity=0.375 Sum_probs=115.9
Q ss_pred hhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcc
Q 003425 383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (821)
Q Consensus 383 ~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~f 462 (821)
....++++++++|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++. +| ..+..+.+|++|
T Consensus 126 ~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~---~~--~~v~~l~~G~~f 200 (381)
T 4din_B 126 TALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV---NG--EWVTNISEGGSF 200 (381)
T ss_dssp HHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE---TT--EEEEEEESSCCB
T ss_pred HHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE---CC--eEeeeCCCCCEE
Confidence 3456788999999999999999999999999999999999999999999999999999996 34 367889999999
Q ss_pred ccccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425 463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (821)
Q Consensus 463 Ge~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~ 513 (821)
||.+++.+.|+.++++|.++|+++.|++++|.+++..+|...+.++..++.
T Consensus 201 Ge~all~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~ 251 (381)
T 4din_B 201 GELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 251 (381)
T ss_dssp CGGGGTSCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EchHHhcCCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999988877766654
No 166
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.50 E-value=4.5e-14 Score=143.59 Aligned_cols=125 Identities=16% Similarity=0.118 Sum_probs=114.9
Q ss_pred hhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcccccc
Q 003425 387 PYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVS 466 (821)
Q Consensus 387 ~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~ 466 (821)
.++.+...+..++++.+..+...++.+.|++|++|+++|+.++.+|||.+|.|+++..+++|++.++..+.+|++||+
T Consensus 9 ~~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~-- 86 (250)
T 3e6c_C 9 DFCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK-- 86 (250)
T ss_dssp CCCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--
T ss_pred hhhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--
Confidence 344445555899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425 467 ILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (821)
Q Consensus 467 ~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~ 514 (821)
++.+. ++++++|.++|+++.|++++|.++++.+|++...++..+..+
T Consensus 87 ~l~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~ 133 (250)
T 3e6c_C 87 LYPTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTK 133 (250)
T ss_dssp CSCCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred ecCCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 77788 999999999999999999999999999999999888777653
No 167
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.46 E-value=1.4e-14 Score=123.21 Aligned_cols=89 Identities=20% Similarity=0.085 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCceeccccCCCCCcccccccchHHHHHHHHHHHHHHhhccccCcccc
Q 003425 208 RIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHA 287 (821)
Q Consensus 208 ~~~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyGdi~p 287 (821)
.++..++.+++++.+.++++++++...+... +.+|.+|+||+++|+|||||||++|
T Consensus 7 ~~l~~~~~~~~~~~~~a~~~~~~E~~~~~~~------------------------~~~~~~a~y~~~~T~tTvGyGDi~P 62 (103)
T 2k1e_A 7 EAQKAEEELQKVLEEASKKAVEAERGAPGAA------------------------LISYPDAIWWSVETATTVGYGDRYP 62 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSTTCC------------------------CCCGGGTTTTTTGGGGCCSCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCcc------------------------cccHHHHHHHHHHHHhcccCCCCCC
Confidence 3455566666777788888888875422110 1257899999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003425 288 VNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (821)
Q Consensus 288 ~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~ 320 (821)
.|+.+++++++++++|+.+++++++.+.+.+.+
T Consensus 63 ~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~ 95 (103)
T 2k1e_A 63 VTEEGRKVAEQVMKAGIEVFALVTAALATDFVR 95 (103)
T ss_dssp CSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGG
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987755
No 168
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.45 E-value=8.8e-13 Score=113.96 Aligned_cols=56 Identities=27% Similarity=0.344 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003425 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (821)
Q Consensus 265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~ 320 (821)
.|.+|+||+++|+|||||||++|.|+.+++++++++++|+.++++.++.+++.+..
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~ 104 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 104 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999998855
No 169
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.44 E-value=5.7e-13 Score=107.64 Aligned_cols=54 Identities=26% Similarity=0.384 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003425 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALI 318 (821)
Q Consensus 265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~ 318 (821)
.|.+|+||+++|+|||||||++|.|+.+|+++++.+++|+.++++.++.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999999999999999999999999999999998765
No 170
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.44 E-value=4.8e-13 Score=134.82 Aligned_cols=117 Identities=15% Similarity=0.157 Sum_probs=105.7
Q ss_pred cCCCHHHHHHHHH--hcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCc
Q 003425 396 KGCSSEFINQIVI--RLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQ 473 (821)
Q Consensus 396 ~~~~~~~l~~l~~--~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~ 473 (821)
++++++.+..+.. .++.+.|++|++|+++|+.++.+|||.+|.|+++..+++|++.++..+ +|++||+.+++.+.++
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~ 80 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETS 80 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCB
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCCc
Confidence 3678888998885 589999999999999999999999999999999999999999999999 9999999999998874
Q ss_pred --ceEEEEe-cceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425 474 --PYTVQVC-ELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (821)
Q Consensus 474 --~~~~~a~-~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~ 513 (821)
+.++.|. ++|+++.|++++|.++++.+|++...+++.+..
T Consensus 81 ~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 123 (238)
T 2bgc_A 81 VGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQK 123 (238)
T ss_dssp SCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 7788888 599999999999999999999999998877765
No 171
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.43 E-value=4e-13 Score=135.81 Aligned_cols=114 Identities=21% Similarity=0.239 Sum_probs=105.6
Q ss_pred HHHHHHHHHhcc---cccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCc--c
Q 003425 400 SEFINQIVIRLH---EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQ--P 474 (821)
Q Consensus 400 ~~~l~~l~~~~~---~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~--~ 474 (821)
++.++.|..... .+.|++|++|+.+|+.++.+|||.+|.|+++..+++|++.++.++.+|++||+.+++.+.|. .
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~~ 109 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRF 109 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBCC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcce
Confidence 667778888888 99999999999999999999999999999999999999999999999999999999998874 5
Q ss_pred eEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425 475 YTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (821)
Q Consensus 475 ~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~ 513 (821)
++++|.++|+++.|++++|.++++.+|++...++..+..
T Consensus 110 ~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 148 (243)
T 3la7_A 110 YHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSS 148 (243)
T ss_dssp EEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred EEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 899999999999999999999999999999988876654
No 172
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.43 E-value=3.6e-13 Score=150.68 Aligned_cols=124 Identities=19% Similarity=0.321 Sum_probs=107.5
Q ss_pred hhhhhhccccccccCCCHHHHHHHHHhccc-ccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCc
Q 003425 383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHE-EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS 461 (821)
Q Consensus 383 ~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~-~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~ 461 (821)
....+++.++++|.+++++.+..++..+.. ..|++|++|+++|+.++.+|||.+|.|+++. .+. .++..+.+|++
T Consensus 333 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~---~~~-~~~~~l~~G~~ 408 (469)
T 1o7f_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI---YGK-GVVCTLHEGDD 408 (469)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEE---TTT-EEEEEEETTCE
T ss_pred HHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEE---cCC-eeEEEecCCCE
Confidence 334577899999999999999999999985 4999999999999999999999999999987 233 37889999999
Q ss_pred cccccccccCCcceEEEEec-ceEEEEechHhHHHHHHHhhhchHHHHHH
Q 003425 462 FGEVSILCNIPQPYTVQVCE-LCRLLRIDKQSFTNIIDIYFCDGRKVLTN 510 (821)
Q Consensus 462 fGe~~~~~~~~~~~~~~a~~-~~~~~~i~~~~f~~~l~~~p~~~~~~l~~ 510 (821)
|||.+++.+.|++++++|.+ +|+++.|++++|.+++..+|++...+.+.
T Consensus 409 fGe~~ll~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e~ 458 (469)
T 1o7f_A 409 FGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKEH 458 (469)
T ss_dssp ECGGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC-------
T ss_pred EEEehhhcCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHhc
Confidence 99999999999999999998 79999999999999999999988876543
No 173
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.39 E-value=1.8e-12 Score=108.35 Aligned_cols=55 Identities=31% Similarity=0.438 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003425 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIV 319 (821)
Q Consensus 265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~ 319 (821)
.|.+|+||+++|+|||||||++|.|..+++++++++++|+.++++.++.++..++
T Consensus 32 ~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~ 86 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ 86 (97)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4889999999999999999999999999999999999999999999999988763
No 174
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.35 E-value=1.1e-12 Score=151.01 Aligned_cols=131 Identities=20% Similarity=0.332 Sum_probs=115.9
Q ss_pred cHHHHHHHHHhhhhhhccccccccCCCHHHHHHHHHhcc-cccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccc
Q 003425 373 PISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLH-EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTED 451 (821)
Q Consensus 373 p~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~-~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~ 451 (821)
|+..|.+.......+.+.++++|.+++++.+..++..+. .+.|++|++|+++||.++.+|||.+|.|+++.. |+ .
T Consensus 18 ~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~---g~-~ 93 (694)
T 3cf6_E 18 PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY---GK-G 93 (694)
T ss_dssp CGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET---TT-E
T ss_pred ChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe---CC-E
Confidence 344454444455667899999999999999999999998 789999999999999999999999999999873 33 5
Q ss_pred eEEEeCCCCccccccccccCCcceEEEEec-ceEEEEechHhHHHHHHHhhhchHHH
Q 003425 452 YVSYLHPNSSFGEVSILCNIPQPYTVQVCE-LCRLLRIDKQSFTNIIDIYFCDGRKV 507 (821)
Q Consensus 452 ~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~-~~~~~~i~~~~f~~~l~~~p~~~~~~ 507 (821)
++..+.+|++|||.+++.+.+++++++|.+ +|+++.|++++|.++++.+|.+...+
T Consensus 94 il~~l~~Gd~fGe~al~~~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l~~~l 150 (694)
T 3cf6_E 94 VVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRL 150 (694)
T ss_dssp EEEEEETTCEECHHHHHHTCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCCCEEE
T ss_pred EEEEeCCCCEeehHHHhCCCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHHHHHH
Confidence 789999999999999999999999999999 59999999999999999999886654
No 175
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.33 E-value=2.2e-12 Score=157.26 Aligned_cols=129 Identities=23% Similarity=0.296 Sum_probs=113.2
Q ss_pred HHHHHHhhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccC--CccceEE
Q 003425 377 RAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN--GTEDYVS 454 (821)
Q Consensus 377 ~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~--g~~~~i~ 454 (821)
|.+-..+.....|+++++|+++++..+.+|+..++.+.|++|++||++||.++++|+|.+|.|.++....+ +.+..+.
T Consensus 32 Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~ 111 (999)
T 4f7z_A 32 RSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTIC 111 (999)
T ss_dssp CCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEEE
T ss_pred CCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeEE
Confidence 43333344456789999999999999999999999999999999999999999999999999999865433 4566788
Q ss_pred EeCCCCccccccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHH
Q 003425 455 YLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRK 506 (821)
Q Consensus 455 ~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~ 506 (821)
.+.+|+.||| +++.+.||+++++|.++|++++|++++|..++.++|+....
T Consensus 112 ~l~~G~sFGE-all~n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~~~ 162 (999)
T 4f7z_A 112 TLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAG 162 (999)
T ss_dssp EEETTCEECG-GGGGTCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred EecCCcchhh-hhccCCCcceEEEeccceEEEEEEHHHHHHHHHhChHHHHH
Confidence 9999999999 89999999999999999999999999999999999875443
No 176
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.30 E-value=4.8e-12 Score=123.11 Aligned_cols=94 Identities=20% Similarity=0.237 Sum_probs=87.6
Q ss_pred ccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEEecceEEEEechHh
Q 003425 413 EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQS 492 (821)
Q Consensus 413 ~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i~~~~ 492 (821)
+.|++|++|+++|++++.+|||.+|.|+++..+++|++.++..+.+|++||+ +++.+.|++++++|.++|+++.|++++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~~ 80 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEPRA 80 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECGGG
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcHHH
Confidence 5789999999999999999999999999999889999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhhhchHHHHHHHhc
Q 003425 493 FTNIIDIYFCDGRKVLTNLLQ 513 (821)
Q Consensus 493 f~~~l~~~p~~~~~~l~~~l~ 513 (821)
|. |++...++..+..
T Consensus 81 ~~------p~~~~~~~~~l~~ 95 (195)
T 3b02_A 81 MD------HEALHRVARNLAR 95 (195)
T ss_dssp CC------HHHHHHHHHHHHH
T ss_pred cC------HHHHHHHHHHHHH
Confidence 98 8887777766654
No 177
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.25 E-value=9.2e-15 Score=136.41 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003425 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKG 321 (821)
Q Consensus 265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~~ 321 (821)
.|.+|+||+++|+|||||||++|.|+.+++++++++++|+++++++++.+++.+...
T Consensus 67 ~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~ 123 (166)
T 3pjs_K 67 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQ 123 (166)
T ss_dssp STTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSS
T ss_pred CHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477999999999999999999999999999999999999999999999998887663
No 178
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.21 E-value=3.7e-11 Score=122.51 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003425 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (821)
Q Consensus 265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~ 320 (821)
.|.+|+||+++|+|||||||++|.++.+++++++.+++|++++|+++|.+.+.++.
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~ 137 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 137 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58899999999999999999999999999999999999999999999999887755
No 179
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.19 E-value=1.8e-11 Score=119.71 Aligned_cols=100 Identities=21% Similarity=0.222 Sum_probs=87.8
Q ss_pred HHHhcccccccccCeEEccCCcc--CeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEEecce
Q 003425 406 IVIRLHEEFFLPGEVIMEKGNVV--DQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELC 483 (821)
Q Consensus 406 l~~~~~~~~~~~~e~I~~~g~~~--~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~ 483 (821)
|...++.+.|++|++|+++|+++ +.+|||.+|.|+++..+++|++.++..+.+|++||+ +++.+.+++++++|.++|
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~ 79 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEAATDV 79 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEESSCE
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEEcccE
Confidence 35677889999999999999999 999999999999999889999999999999999999 988999999999999999
Q ss_pred EEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425 484 RLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (821)
Q Consensus 484 ~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~ 513 (821)
+++.| +++|. |++...++..+..
T Consensus 80 ~v~~i-~~~~~------p~~~~~~~~~l~~ 102 (202)
T 2zcw_A 80 RLEPL-PENPD------PELLKDLAQHLSQ 102 (202)
T ss_dssp EEEEC-CSSCC------HHHHHHHHHHHHH
T ss_pred EEEEE-hHhcC------HHHHHHHHHHHHH
Confidence 99999 98886 7777777766554
No 180
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.18 E-value=3.9e-11 Score=146.35 Aligned_cols=113 Identities=20% Similarity=0.329 Sum_probs=100.7
Q ss_pred hhhhhccccccccCCCHHHHHHHHHhcccc-cccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcc
Q 003425 384 LYLPYIEKVPLFKGCSSEFINQIVIRLHEE-FFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (821)
Q Consensus 384 ~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~-~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~f 462 (821)
...+.+.++|.|.+++...++.|+..+... .+++|++|+++||.++.+|||.+|.|+++. .+ +..+..+++||+|
T Consensus 334 ~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~---~~-~~~v~~L~~Gd~F 409 (999)
T 4f7z_A 334 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI---YG-KGVVCTLHEGDDF 409 (999)
T ss_dssp HHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEE---TT-TEEEEEEETTCEE
T ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEE---cC-CcceEEecCCCcc
Confidence 345678899999999999999999999865 457799999999999999999999999986 22 3357889999999
Q ss_pred ccccccccCCcceEEEEecc-eEEEEechHhHHHHHHHh
Q 003425 463 GEVSILCNIPQPYTVQVCEL-CRLLRIDKQSFTNIIDIY 500 (821)
Q Consensus 463 Ge~~~~~~~~~~~~~~a~~~-~~~~~i~~~~f~~~l~~~ 500 (821)
||.+++++.||.+|++|.++ |++++|++++|.+++...
T Consensus 410 GElALL~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~~ 448 (999)
T 4f7z_A 410 GKLALVNDAPRAASIVLREDNCHFLRVDKEDGNRILRDV 448 (999)
T ss_dssp CGGGGTCSCBCSSEEEESSSSEEEEEEEHHHHHHHHHHH
T ss_pred cchhhccCCCeeEEEEEecCceEEEEeeHHHHHHHHhHH
Confidence 99999999999999999985 999999999999998754
No 181
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=99.17 E-value=7.7e-11 Score=117.31 Aligned_cols=205 Identities=13% Similarity=0.162 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHhhhcceeeeeec--CCCcCeehhHHHHHHHHHHhHhheeeEEEEeCCceEEeeccHHHHHHHhhh-
Q 003425 74 RAWTKFILIWAVYSSIFTPVEFGFFR--GLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS- 150 (821)
Q Consensus 74 ~~w~~~~~~~~~~~~~~~p~~~~f~~--~~~~~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~~~~v~~~~~I~~~Ylk~- 150 (821)
..++.++.++++.+++...+.. +.. +....+..+|.++.++|++|+++|+... +.+ ++|+++
T Consensus 12 ~~f~~~i~~~I~ln~i~l~~~~-~~~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~------------~~~--~~y~~~~ 76 (229)
T 4dxw_A 12 RIFQFTVVSIIILNAVLIGATT-YELDPLFLETIHLLDYGITIFFVIEILIRFIGE------------KQK--ADFFKSG 76 (229)
T ss_dssp HHHHHHHHHHHHHHHHSTTTCC-SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------CH
T ss_pred chHHHHHHHHHHHHHHHHHHcc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHc------------Cch--hHHhcCC
Confidence 4567788888888877766553 211 1123467899999999999999976432 222 689988
Q ss_pred hhHHHHHhhhhHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhhhhhHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003425 151 SFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIR-INYMFSRIVKLIAVELYCSHIAACIFYY 229 (821)
Q Consensus 151 ~f~iDlis~lP~~~~~~~~~~~~~~~~l~llrl~rl~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~h~~ac~~~~ 229 (821)
|.++|+++++|..+..... ...+.+|++|++|++|+.+..+.++.... .......+..+.+.++++..++|.+-+.
T Consensus 77 wni~D~~~v~~~~i~~~~~---~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~~ 153 (229)
T 4dxw_A 77 WNIFDTVIVAISLIPIPNN---SSFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAI 153 (229)
T ss_dssp HHHHHHHHHHHTTCC-----------CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhcCcc---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799988877643322111 12233344444444444444444433222 2333445556666666666666665444
Q ss_pred HHccCCCCCCCCceeccccCCCCCcccccccchHHHHHHHHHHHHHHhhccccCcccc----CChhHH-HHHHHHHHHHH
Q 003425 230 LATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHA----VNLREM-VFIMIYVSFDM 304 (821)
Q Consensus 230 i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyGdi~p----~t~~e~-~~~~~~~i~g~ 304 (821)
+.....+ +.|+++..|+||.+.++||.||+|+.. .++... .+..++.+.+.
T Consensus 154 lf~~~~~------------------------~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~ 209 (229)
T 4dxw_A 154 LFGNDDP------------------------SRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSI 209 (229)
T ss_dssp HTTTTSC------------------------TTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHH
T ss_pred HhccCCc------------------------ccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 3322110 113468999999999999999999722 222333 33445555566
Q ss_pred HHHHHHHHHHHHHHhc
Q 003425 305 ILGAYLIGNMTALIVK 320 (821)
Q Consensus 305 ~~~a~~i~~i~~~~~~ 320 (821)
++..++++.+.+.+++
T Consensus 210 i~lNlfiavi~~~f~~ 225 (229)
T 4dxw_A 210 TILNLVIAILVDVVIQ 225 (229)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777666654
No 182
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=99.15 E-value=9.7e-11 Score=120.28 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003425 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKG 321 (821)
Q Consensus 265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~~ 321 (821)
.|.+|+||+++|||||||||++|.+..+++++++.+++|++++|+++|.+.+.++..
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~ 134 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQP 134 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999999999999988763
No 183
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.14 E-value=5.7e-11 Score=122.27 Aligned_cols=57 Identities=25% Similarity=0.345 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003425 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKG 321 (821)
Q Consensus 265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~~ 321 (821)
.|.+|+||+++|+|||||||++|.++.+++++++.+++|++++|+++|.+.+.+...
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~ 152 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARP 152 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999988763
No 184
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.08 E-value=1.5e-09 Score=109.71 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003425 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (821)
Q Consensus 265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~ 320 (821)
.|.+|+||+++|+|||||||++|.|..+++++++++++|+.+++++++.++..+..
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~ 170 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGS 170 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999887754
No 185
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.02 E-value=1.5e-09 Score=109.86 Aligned_cols=56 Identities=21% Similarity=0.332 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhhccccCccccCChhHH------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003425 265 SYITSMYASVVTMTTVGYGDVHAVNLREM------VFIMIYVSFDMILGAYLIGNMTALIVK 320 (821)
Q Consensus 265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~------~~~~~~~i~g~~~~a~~i~~i~~~~~~ 320 (821)
.|++|+||+++|+|||||||++|.+..++ +++++++++|+.+++++++.+++.+..
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~ 285 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRV 285 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999998886 599999999999999999999988766
No 186
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=99.00 E-value=2.4e-09 Score=109.62 Aligned_cols=98 Identities=18% Similarity=0.295 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCC--CCCCceeccccCCCCCcccccccchHHHHHHHHHHHHHHhhccccCcccc
Q 003425 210 VKLIAVELYCSHIAACIFYYLATTLPPE--QEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHA 287 (821)
Q Consensus 210 ~~~~~~~l~~~h~~ac~~~~i~~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyGdi~p 287 (821)
+.+++.+++...+||++||.++....+. ..+.+|.+ +-.. ...+..+|||+++|+|||||||+.|
T Consensus 47 lif~~~y~~swl~Fa~ly~~ia~~~Gdl~~~~~~~~~~-Cv~~------------~~sf~~af~fSv~T~TTvGYGd~~p 113 (340)
T 3sya_A 47 LIFVMVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTP-CVTN------------LNGFVSAFLFSIETETTIGYGYRVI 113 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCSSCSSCCC-SBSC------------CCSTTHHHHHHHHHHSCCCCSSSCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc-hhcc------------ccCHHHHHhhhheeeeeecCCCccC
Confidence 3344445566678999999887422111 11111211 0000 1246789999999999999999999
Q ss_pred C--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003425 288 V--NLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (821)
Q Consensus 288 ~--t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~ 320 (821)
. ++.+++++++.+++|+++.|+++|.+.+-++.
T Consensus 114 ~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~sr 148 (340)
T 3sya_A 114 TDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQ 148 (340)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 7 68999999999999999999999999887766
No 187
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.87 E-value=4.6e-09 Score=119.63 Aligned_cols=86 Identities=22% Similarity=0.325 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCceeccccCCCCCcccccccchHHHHHHHHHHHHHHhhccccCcccc
Q 003425 208 RIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHA 287 (821)
Q Consensus 208 ~~~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyGdi~p 287 (821)
.+...++.+++++++++|+|+++....+. ..| .|++|+||+++|+|||||||++|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----~~~---------------------~~~~~~y~~~~t~tTvGygd~~p 73 (565)
T 4gx0_A 19 VLLLYCAFLLVMLLAYASIFRYLMWHLEG----RAY---------------------SFMAGIYWTITVMTTLGFGDITF 73 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCC---------------------CHHHHHHHHHHHHTTCCCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCC---------------------chhhhhheeeeeeeeecCCCcCC
Confidence 45666777777777888887776532111 112 37899999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 003425 288 VNLREMVFIMIYVSFDMILGAYLIGN-MTALI 318 (821)
Q Consensus 288 ~t~~e~~~~~~~~i~g~~~~a~~i~~-i~~~~ 318 (821)
.|+.+++++++++++|++++++.++. +++.+
T Consensus 74 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 74 ESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 55544
No 188
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.87 E-value=8.1e-09 Score=102.76 Aligned_cols=54 Identities=15% Similarity=0.377 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003425 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALI 318 (821)
Q Consensus 265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~ 318 (821)
.|.+|+||+++|+|||||||++|.|+.+++++++++++|+.+++++++.+...+
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l 146 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRI 146 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999987654
No 189
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.85 E-value=9.8e-09 Score=105.32 Aligned_cols=98 Identities=16% Similarity=0.226 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCC---CCCCCceeccccCCCCCcccccccchHHHHHHHHHHHHHHhhccccCccc
Q 003425 210 VKLIAVELYCSHIAACIFYYLATTLPP---EQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVH 286 (821)
Q Consensus 210 ~~~~~~~l~~~h~~ac~~~~i~~~~~~---~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyGdi~ 286 (821)
+.++..+++...++|.+||+++....+ .....+|.+-. .-...+..+|||++.|+|||||||+.
T Consensus 49 l~f~~~y~~swl~Fally~~ia~~~gdl~~~~~~~~~~~Cv-------------~~~~sf~~af~fSv~T~TTvGYGd~~ 115 (343)
T 3spc_A 49 LLFSLAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPCV-------------LQVNGFVAAFLFSIETQTTIGYGFRC 115 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTGGGCTTCCSSCCCSE-------------ETCCSHHHHHHHHHHHHSCCCCSSSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccc-------------cccCCHHHHhheeeeeeEeecCCCcc
Confidence 334455566677888888887643211 11111221100 00235889999999999999999998
Q ss_pred cC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003425 287 AV--NLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (821)
Q Consensus 287 p~--t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~ 320 (821)
|. ++.+++++++.+++|+++.|+++|.+.+-++.
T Consensus 116 p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~sr 151 (343)
T 3spc_A 116 VTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMAR 151 (343)
T ss_dssp ECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 74 89999999999999999999999999888876
No 190
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.81 E-value=3.5e-09 Score=105.34 Aligned_cols=54 Identities=19% Similarity=0.322 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhhccccCccccCChh-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003425 265 SYITSMYASVVTMTTVGYGDVHAVNLR-------EMVFIMIYVSFDMILGAYLIGNMTALI 318 (821)
Q Consensus 265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~-------e~~~~~~~~i~g~~~~a~~i~~i~~~~ 318 (821)
.|++|+||+++|+|||||||++|.+.. +++++++++++|+.+++++++.+..++
T Consensus 201 s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~ 261 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELH 261 (280)
T ss_dssp CHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSH
T ss_pred chhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999999885 599999999999999999999997765
No 191
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=98.81 E-value=7.4e-10 Score=99.85 Aligned_cols=118 Identities=19% Similarity=0.200 Sum_probs=71.8
Q ss_pred ccccccCCcCeEEcCCChhHHHHHHHHHHHHHHHhhhcceeeeee--cCCCcCeehhHHHHHHHHHHhHhheeeEEEEeC
Q 003425 54 LSGFRHFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFF--RGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDS 131 (821)
Q Consensus 54 ~~~~~~~~~~~~~~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~--~~~~~~~~~~~~~~~~~f~~Di~l~f~t~y~~~ 131 (821)
.+.+|.+.+..+.+| .|+.++.++++.+++++.+..... .+....+..+|.++.++|++|+++|+.
T Consensus 7 ~~~~~~~~~~~~e~~------~f~~~i~~lil~sv~~v~~et~~~i~~~~~~~~~~id~~~~~iF~~Ey~lRl~------ 74 (147)
T 2kyh_A 7 LGGRVRNIGDVMEHP------LVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAY------ 74 (147)
T ss_dssp CSHHHHHHHHHHTCH------HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHhCc------hHHHHHHHHHHHHHHHHHHHHhHhhchhHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 334555555555444 356666666666555544443221 112234678999999999999999764
Q ss_pred CceEEeeccHHHHHHHhhhhhHHHHHhhhhHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHh
Q 003425 132 QTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHK 195 (821)
Q Consensus 132 ~~~~~v~~~~~I~~~Ylk~~f~iDlis~lP~~~~~~~~~~~~~~~~l~llrl~rl~r~~~~~~~ 195 (821)
..|++ ++|+++ -++|++|++|++..+... ..++++|++|++|++|+.++.+.
T Consensus 75 ------~a~~k--~~f~~~-~iiDllailP~~~~~~~~---~~lr~lRvlRllRv~Rllrl~r~ 126 (147)
T 2kyh_A 75 ------KSGDP--AGYVKK-TLYEIPALVPAGLLALIE---GHLAGLGLFRLVRLLRFLRILLI 126 (147)
T ss_dssp ------HHTCH--HHHHHH-STTTHHHHCCHHHHHHHH---HHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ------HCCcH--HHHHHH-HHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445 789998 699999999988665431 22444444444444444444433
No 192
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=98.62 E-value=9.3e-09 Score=91.52 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHhhhcceeeeeec--CCCcCeehhHHHHHHHHHHhHhheeeEEEEeCCceEEeeccHHHHHHHhhhh
Q 003425 74 RAWTKFILIWAVYSSIFTPVEFGFFR--GLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSS 151 (821)
Q Consensus 74 ~~w~~~~~~~~~~~~~~~p~~~~f~~--~~~~~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~~~~v~~~~~I~~~Ylk~~ 151 (821)
..++.+++++++.+.+...+...... .....+..+|.++.++|++|+++|+.. .|++ ++|++ |
T Consensus 6 ~~f~~~i~~lIlls~~~~~~et~~~~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~------------~~~~--~~y~~-~ 70 (132)
T 1ors_C 6 PLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYK------------SGDP--AGYVK-K 70 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH------------TTST--TTTTT-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------CCCH--HHHHH-H
Confidence 35677777777776665554432111 112346789999999999999997743 3333 78999 8
Q ss_pred hHHHHHhhhhHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 003425 152 FIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKME 197 (821)
Q Consensus 152 f~iDlis~lP~~~~~~~~~~~~~~~~l~llrl~rl~r~~~~~~~~~ 197 (821)
-++|+++++|+.+.....+....+|.+|++|++|++|+.++...++
T Consensus 71 niiDllailp~~~~~~~~~~l~~lr~lRllRv~Rvlkl~r~~~~l~ 116 (132)
T 1ors_C 71 TLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGS 116 (132)
T ss_dssp CGGGTGGGSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 8999999999876554311122344455555555555555544443
No 193
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.44 E-value=1.4e-08 Score=107.44 Aligned_cols=55 Identities=24% Similarity=0.409 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003425 266 YITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (821)
Q Consensus 266 Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~ 320 (821)
|.+|+||+++|+|||||||++|.|+.+++++++++++|+++++++++.+++.+.+
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLIN 100 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC--
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5589999999999999999999999999999999999999999999999887654
No 194
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=78.72 E-value=2.2 Score=50.34 Aligned_cols=55 Identities=16% Similarity=0.274 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003425 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (821)
Q Consensus 265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~ 320 (821)
....++||++.++++.| ++..|.+...|++.++++++++++.+.-.+++++.+..
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46689999999999999 78999999999999999999999999999999988753
No 195
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=74.48 E-value=2.3 Score=46.68 Aligned_cols=21 Identities=10% Similarity=0.365 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 003425 178 LLWIRLYRVRKVSQFFHKMEK 198 (821)
Q Consensus 178 l~llrl~rl~r~~~~~~~~~~ 198 (821)
++++|++|++|+.|.++-++.
T Consensus 305 ~~~lrvlRllRvlRilkL~r~ 325 (514)
T 2r9r_B 305 RRVVQIFRIMRILRIFKLSRH 325 (514)
T ss_dssp HHHHHHHHHHGGGGGGGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 345677777777766654443
No 196
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=71.14 E-value=6.1 Score=39.56 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 003425 180 WIRLYRVRKVSQFFHKME 197 (821)
Q Consensus 180 llrl~rl~r~~~~~~~~~ 197 (821)
++|++|++|+.|+.+...
T Consensus 115 ~lr~~RilR~lrl~~~~~ 132 (285)
T 3rvy_A 115 ILRVLRVLRLFRLVTAVP 132 (285)
T ss_dssp HHHHHGGGGGGHHHHSST
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555544443
No 197
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=67.68 E-value=7.5 Score=37.38 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 003425 180 WIRLYRVRKVSQFFHKME 197 (821)
Q Consensus 180 llrl~rl~r~~~~~~~~~ 197 (821)
.+|++|++|+.|+.+..+
T Consensus 100 ~lr~~RilR~lrl~~~~~ 117 (229)
T 4dxw_A 100 VLRLLRIFRVLRLISVIP 117 (229)
T ss_dssp CCTTHHHHHHTTHHHHCH
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 335555555555554443
No 198
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=66.97 E-value=12 Score=41.01 Aligned_cols=100 Identities=16% Similarity=0.098 Sum_probs=51.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHH----HhcCCCCCcccccchhhHHHhcCCHHHH----HHHHH
Q 003425 586 EIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLL----VKEGASLNVEEAGSFLCTAVARGDSDLL----KRVLS 657 (821)
Q Consensus 586 ~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~L----l~~~~~~~~~~~~t~l~~A~~~~~~~~v----~~Ll~ 657 (821)
++.+.+.+.|..||.... .+.+...++.|+.+-+..+ .+.|..++...-.+.+...+..|+.+-+ +.+.+
T Consensus 91 ~lf~~M~~~G~~Pd~~ty--n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATF--TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHTTCCCCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344455556666554321 1334555566666544333 3456666655555666666677766433 33345
Q ss_pred CCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHH
Q 003425 658 NGIDPNTRDYDLRTPLHVAASEGLYLMAKLLV 689 (821)
Q Consensus 658 ~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll 689 (821)
.|..+|... -.+.+...++.|+.+-+.-++
T Consensus 169 ~G~~Pd~~t--y~~Li~~~~~~g~~d~A~~ll 198 (501)
T 4g26_A 169 SEVVPEEPE--LAALLKVSMDTKNADKVYKTL 198 (501)
T ss_dssp TTCCCCHHH--HHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCCHHH--HHHHHHHHhhCCCHHHHHHHH
Confidence 666655432 123344455666655443333
No 199
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=62.98 E-value=16 Score=39.97 Aligned_cols=154 Identities=12% Similarity=0.091 Sum_probs=90.7
Q ss_pred HHHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcC-C-------------HHHHHHHHHcCCCCCCCCC
Q 003425 505 RKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHG-D-------------LYQLEGLIRAGADPNRTDY 570 (821)
Q Consensus 505 ~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g-~-------------~~~v~~Ll~~g~~~n~~d~ 570 (821)
...+..+.+.++.......++....-.+ ..+....+.|..|+..+ . .++.+.+.+.|..||....
T Consensus 30 ~~~id~c~k~G~~~~A~~lf~~M~~~Gv-~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 30 KQKLDMCSKKGDVLEALRLYDEARRNGV-QLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3445555666665555444433222111 22344455565555432 1 3566777788887765421
Q ss_pred CCCcHHHHHHHcCCHHHHHHHH----HcCCCCCCCCCCCCcHHHHHHHcCChHHHH----HHHhcCCCCCcccccchhhH
Q 003425 571 DGRSPLHLAASRGYEEIMTFLI----QKGVDINLKDNFGNTPLLEAIKYGNDGAAS----LLVKEGASLNVEEAGSFLCT 642 (821)
Q Consensus 571 ~g~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~----~Ll~~~~~~~~~~~~t~l~~ 642 (821)
.+.+...+..|+.+-+..++ +.|..|+.... .+.+...+..|..+-+. .+.+.|..++...-.+.+..
T Consensus 109 --n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty--n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 109 --TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY--GPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp --HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee--hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 24556677888886655544 46777765432 23455667788876544 44567888887777778888
Q ss_pred HHhcCCHHHHHHHHH----CCCCCC
Q 003425 643 AVARGDSDLLKRVLS----NGIDPN 663 (821)
Q Consensus 643 A~~~~~~~~v~~Ll~----~g~~~~ 663 (821)
.+..|+.+-+..+++ .|..++
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDLVRQVS 209 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred HhhCCCHHHHHHHHHHHHHhCCCcC
Confidence 889998875555543 455554
No 200
>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=61.41 E-value=6.7 Score=32.52 Aligned_cols=48 Identities=15% Similarity=0.318 Sum_probs=40.0
Q ss_pred CccHHHHHHHHHhHcCCCCC--cccccCCCceeeeeeeeecCCeEEEeecC
Q 003425 772 PQNIKDLIKTAAEQLDFRGG--DCILSSEGGKILDVDMINDDQKLYLIQET 820 (821)
Q Consensus 772 p~~~~~l~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~r~~~~~~~~~~~ 820 (821)
..+++.+++...++++.+.+ .++.+.+|.+|.+++-+.||+ .|++++.
T Consensus 39 ~~sfe~lL~~lT~~v~l~~GaVr~Lyt~~G~~V~~l~dl~dg~-~YVa~g~ 88 (108)
T 2dnf_A 39 LNQWDHVLQMVTEKITLRSGAVHRLYTLEGKLVESGAELENGQ-FYVAVGR 88 (108)
T ss_dssp HTCHHHHHHHHHHHCCCTTSSCCEEEETTCCEESSTTSCCSSC-BEEEECS
T ss_pred ccCHHHHHHHHHHhhCCCCCCEEEEEcCCCCEeCCHHHhCCCC-EEEEeCC
Confidence 35889999999999988643 678899999999999898888 7887763
No 201
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=51.77 E-value=48 Score=27.18 Aligned_cols=64 Identities=19% Similarity=0.189 Sum_probs=38.7
Q ss_pred cccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEEecceEEEEe
Q 003425 414 FFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 488 (821)
Q Consensus 414 ~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i 488 (821)
.+.||..+-.......++++|++|.+.+.. +++ ...+.+||.+= +-.+.+..+ .+.+++.++.+
T Consensus 44 ~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i---~~~---~~~l~~Gd~i~---i~~~~~H~~--~~~~~~~~~~i 107 (114)
T 2ozj_A 44 SFADGESVSEEEYFGDTLYLILQGEAVITF---DDQ---KIDLVPEDVLM---VPAHKIHAI--AGKGRFKMLQI 107 (114)
T ss_dssp EEETTSSCCCBCCSSCEEEEEEEEEEEEEE---TTE---EEEECTTCEEE---ECTTCCBEE--EEEEEEEEEEE
T ss_pred EECCCCccccEECCCCeEEEEEeCEEEEEE---CCE---EEEecCCCEEE---ECCCCcEEE--EeCCCcEEEEE
Confidence 355665543333455789999999998765 343 34588988543 222555544 34466666554
No 202
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=49.94 E-value=48 Score=31.34 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=13.8
Q ss_pred chhHHHHHHHHHHHHHHH
Q 003425 171 RKEAVRYLLWIRLYRVRK 188 (821)
Q Consensus 171 ~~~~~~~l~llrl~rl~r 188 (821)
..+.+|++|++|++|+.+
T Consensus 98 ~lr~lRllRllR~~r~~~ 115 (223)
T 1orq_C 98 LFRLVRLLRFLRILLIIS 115 (223)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455678888888888877
No 203
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=49.03 E-value=56 Score=26.95 Aligned_cols=66 Identities=14% Similarity=0.031 Sum_probs=41.8
Q ss_pred ccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEEecceEEEE
Q 003425 411 HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLR 487 (821)
Q Consensus 411 ~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~ 487 (821)
....++||..+-..--...++++|++|++++.. +++ ...+.+||.+=- -.+.+. ++++.+++.++.
T Consensus 39 ~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~---~~~l~~Gd~i~i---p~~~~H--~~~~~~~~~~~~ 104 (114)
T 3fjs_A 39 MRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV---DGA---QRRLHQGDLLYL---GAGAAH--DVNAITNTSLLV 104 (114)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEESCEEEEE---TTE---EEEECTTEEEEE---CTTCCE--EEEESSSEEEEE
T ss_pred EEEEECCCCccCceeCCCcEEEEEEECEEEEEE---CCE---EEEECCCCEEEE---CCCCcE--EEEeCCCcEEEE
Confidence 345677887765554556789999999999876 343 256888885432 123444 455667765443
No 204
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=48.62 E-value=48 Score=31.53 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=48.9
Q ss_pred cccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEEecceEEEEe
Q 003425 410 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 488 (821)
Q Consensus 410 ~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i 488 (821)
+....+.||+.+-..--+.+.+++|++|++++.. +|++ ..+++||++=- -.+.| -.++|.++|.++.+
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i---~~~~---~~l~~Gd~~~~---p~~~~--H~~~a~~~~~~l~i 106 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFI---ENNK---KTISNGDFLEI---TANHN--YSIEARDNLKLIEI 106 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEE---SSCE---EEEETTEEEEE---CSSCC--EEEEESSSEEEEEE
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEE---CCEE---EEECCCCEEEE---CCCCC--EEEEECCCcEEEEE
Confidence 3455788999887777778899999999999876 4443 45788875321 12444 46678899998877
No 205
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=44.71 E-value=65 Score=26.94 Aligned_cols=65 Identities=17% Similarity=0.145 Sum_probs=39.2
Q ss_pred ccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEEecceEEEEe
Q 003425 413 EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 488 (821)
Q Consensus 413 ~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i 488 (821)
..+.||..+-.. ...+++++|++|++.+.. +|+. ..+++||.+--. .+.+...+... +.++++.+
T Consensus 45 ~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~---~g~~---~~l~~GD~v~ip---~g~~H~~~~~~-~~~~~l~v 109 (119)
T 3lwc_A 45 GRYAPGQSLTET-MAVDDVMIVLEGRLSVST---DGET---VTAGPGEIVYMP---KGETVTIRSHE-EGALTAYV 109 (119)
T ss_dssp EEECTTCEEEEE-CSSEEEEEEEEEEEEEEE---TTEE---EEECTTCEEEEC---TTCEEEEEEEE-EEEEEEEE
T ss_pred EEECCCCCcCcc-CCCCEEEEEEeCEEEEEE---CCEE---EEECCCCEEEEC---CCCEEEEEcCC-CCeEEEEE
Confidence 456677655443 367799999999999876 4433 458999965321 24444433322 45554443
No 206
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=40.83 E-value=24 Score=30.33 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=37.5
Q ss_pred cCccHHHHHHHHHhHcCCCC---C-cccccCCCceeee---eeeeecCCeEEEeec
Q 003425 771 IPQNIKDLIKTAAEQLDFRG---G-DCILSSEGGKILD---VDMINDDQKLYLIQE 819 (821)
Q Consensus 771 lp~~~~~l~~~~~~~~~~~~---~-~~~~~~~g~~~~~---~~~~r~~~~~~~~~~ 819 (821)
.-.+++||+..+.++|+++. + .-++.+||-++++ +...-||..+.++..
T Consensus 80 ~A~SL~EL~~K~~~kL~l~~~~~~~~LvLeeDGTeVddEeYF~tLp~nT~LmvL~~ 135 (145)
T 1ibx_B 80 AASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCLPSNTKFVALAS 135 (145)
T ss_dssp CCSSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCBCSSHHHHHHSCSSCBEEEECS
T ss_pred EcCCHHHHHHHHHHHhcCCCCccccEEEEeeCCcEEechhHhhcCCCCCEEEEECC
Confidence 35789999999999999954 3 3457789999966 666678887777654
No 207
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.65 E-value=16 Score=28.91 Aligned_cols=49 Identities=12% Similarity=0.342 Sum_probs=36.4
Q ss_pred cCccHHHHHHHHHhHcCCCC-C-cccccCCCceeee---eeeeecCCeEEEeec
Q 003425 771 IPQNIKDLIKTAAEQLDFRG-G-DCILSSEGGKILD---VDMINDDQKLYLIQE 819 (821)
Q Consensus 771 lp~~~~~l~~~~~~~~~~~~-~-~~~~~~~g~~~~~---~~~~r~~~~~~~~~~ 819 (821)
.-.+++||+..+.++|+... + .-++.+||-++++ +...-||..+.++..
T Consensus 26 ~A~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tLp~nT~lmvL~~ 79 (91)
T 2eel_A 26 MASSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLGDNTHFMILEK 79 (91)
T ss_dssp EESSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTSCSSEEEEEEET
T ss_pred EcCCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhCCCCCEEEEEcC
Confidence 34789999999999999853 3 3447779999966 556667777766654
No 208
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=38.31 E-value=20 Score=32.70 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=36.4
Q ss_pred cccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccc
Q 003425 410 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (821)
Q Consensus 410 ~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fG 463 (821)
+....+.||......-..++++++|++|++++....+++.+ ...+++||.+=
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~--~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD--TYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEE--EEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcE--EEEECCCCEEE
Confidence 44557788877654433457999999999998775555433 45789999653
No 209
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=38.11 E-value=98 Score=25.16 Aligned_cols=67 Identities=15% Similarity=0.098 Sum_probs=40.3
Q ss_pred ccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEEecceEEEEe
Q 003425 411 HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 488 (821)
Q Consensus 411 ~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i 488 (821)
....+.||..+-..--...++++|++|.+.+.. +++ ...+.+||.+=- -.+.+. .+.+.+++.++.+
T Consensus 37 ~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~---~~~---~~~l~~Gd~~~i---p~~~~H--~~~~~~~~~~l~v 103 (116)
T 2pfw_A 37 VKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV---DGV---IKVLTAGDSFFV---PPHVDH--GAVCPTGGILIDT 103 (116)
T ss_dssp EEEEECTTEEEEEECCSSEEEEEEEEECEEEEE---TTE---EEEECTTCEEEE---CTTCCE--EEEESSCEEEEEE
T ss_pred EEEEECCCCcCCcEECCcceEEEEEeeEEEEEE---CCE---EEEeCCCCEEEE---CcCCce--eeEeCCCcEEEEE
Confidence 344667776643222335689999999998775 343 345889886421 123443 3455557776665
No 210
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=37.86 E-value=31 Score=31.21 Aligned_cols=67 Identities=15% Similarity=0.103 Sum_probs=37.4
Q ss_pred ccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEEecceEEEEe
Q 003425 413 EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 488 (821)
Q Consensus 413 ~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i 488 (821)
..++||...-..-....++++|++|++++.. .+|+ ...+++||.+ - -.+.++.+.-...+.|+++.+
T Consensus 84 v~l~PG~~~~~H~H~~eE~~~VLeGel~l~l--d~ge---~~~L~~GDsi-~---~~g~~H~~~N~g~~~ar~l~V 150 (172)
T 3es1_A 84 VDMLPGKESPMHRTNSIDYGIVLEGEIELEL--DDGA---KRTVRQGGII-V---QRGTNHLWRNTTDKPCRIAFI 150 (172)
T ss_dssp EEECTTCBCCCBCCSEEEEEEEEESCEEEEC--GGGC---EEEECTTCEE-E---ECSCCBEEECCSSSCEEEEEE
T ss_pred EEECCCCCCCCeecCceEEEEEEeCEEEEEE--CCCe---EEEECCCCEE-E---eCCCcEEEEeCCCCCEEEEEE
Confidence 4556665322222233468899999999875 1133 2458999987 3 235555443333344555443
No 211
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=37.53 E-value=28 Score=29.95 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003425 175 VRYLLWIRLYRVRKVSQF 192 (821)
Q Consensus 175 ~~~l~llrl~rl~r~~~~ 192 (821)
+|++|++|++|+.|..+-
T Consensus 97 lRllRv~Rvlkl~r~~~~ 114 (132)
T 1ors_C 97 FRLVRLLRFLRILLIISR 114 (132)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhH
Confidence 334444444444433333
No 212
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=37.46 E-value=32 Score=27.68 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=37.8
Q ss_pred EcCccHHHHHHHHHhHcCCCC---C-cccccCCCceeee---eeeeecCCeEEEeec
Q 003425 770 WIPQNIKDLIKTAAEQLDFRG---G-DCILSSEGGKILD---VDMINDDQKLYLIQE 819 (821)
Q Consensus 770 ~lp~~~~~l~~~~~~~~~~~~---~-~~~~~~~g~~~~~---~~~~r~~~~~~~~~~ 819 (821)
..-.+++||+..+.++|+++. + .-++.+||-++++ +...-||..+.++..
T Consensus 34 V~A~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tLp~nT~lmvL~~ 90 (100)
T 1f2r_I 34 VAASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLPSNTKFVALAC 90 (100)
T ss_dssp EEESSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSSCSCCEEEEECS
T ss_pred EEcCCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcCCCCCEEEEEcC
Confidence 345899999999999999953 2 3347789999865 667778887777654
No 213
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=35.99 E-value=28 Score=29.40 Aligned_cols=18 Identities=0% Similarity=-0.154 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHcc
Q 003425 216 ELYCSHIAACIFYYLATT 233 (821)
Q Consensus 216 ~l~~~h~~ac~~~~i~~~ 233 (821)
++++..+.++++|.++..
T Consensus 36 ~~~~~~~~a~~~~~~E~~ 53 (122)
T 2ih3_C 36 LVIVLLAGSYLAVLAERG 53 (122)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhheeeec
Confidence 334445566677776653
No 214
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=33.94 E-value=1.3e+02 Score=24.28 Aligned_cols=67 Identities=13% Similarity=0.074 Sum_probs=40.0
Q ss_pred ccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEEecceEEEEe
Q 003425 411 HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 488 (821)
Q Consensus 411 ~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i 488 (821)
....+.||..+-..--...++++|++|.+.+.. +|+. ..+.+|+.+=- -.+.+. .+.+.++++++.+
T Consensus 43 ~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~---~~~~---~~l~~Gd~~~i---p~~~~H--~~~~~~~~~~~~v 109 (115)
T 1yhf_A 43 TVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI---DQET---YRVAEGQTIVM---PAGIPH--ALYAVEAFQMLLV 109 (115)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEESEEEEEE---TTEE---EEEETTCEEEE---CTTSCE--EEEESSCEEEEEE
T ss_pred EEEEECCCCccCCEECCCcEEEEEEeCEEEEEE---CCEE---EEECCCCEEEE---CCCCCE--EEEECCCceEEEE
Confidence 344667777654333335689999999998765 3432 45788886531 123343 3445556666554
No 215
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=31.13 E-value=69 Score=25.27 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=29.4
Q ss_pred cccccccCeEEccCCc-cCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcc
Q 003425 412 EEFFLPGEVIMEKGNV-VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (821)
Q Consensus 412 ~~~~~~~e~I~~~g~~-~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~f 462 (821)
...+.||..+-..--. .+++++|++|.+.+.. +++ ...+.+||++
T Consensus 32 ~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~---~~~---~~~l~~Gd~~ 77 (105)
T 1v70_A 32 LYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV---GEE---EALLAPGMAA 77 (105)
T ss_dssp EEEECTTCEEEEECCSSCEEEEEEEESCEEEEE---TTE---EEEECTTCEE
T ss_pred EEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE---CCE---EEEeCCCCEE
Confidence 3466777765433223 3579999999998765 333 3457898865
No 216
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=30.58 E-value=49 Score=35.56 Aligned_cols=54 Identities=7% Similarity=0.026 Sum_probs=39.4
Q ss_pred hcccccccccCeEEccC-CccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcc
Q 003425 409 RLHEEFFLPGEVIMEKG-NVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (821)
Q Consensus 409 ~~~~~~~~~~e~I~~~g-~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~f 462 (821)
.+....+.||-.+-..- ..++++++|++|.+++...+++|.......+.+||+|
T Consensus 339 s~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~ 393 (476)
T 1fxz_A 339 SAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVL 393 (476)
T ss_dssp CEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred eEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEE
Confidence 34556778887654332 3367999999999998887777766555679999965
No 217
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=30.41 E-value=79 Score=28.30 Aligned_cols=45 Identities=13% Similarity=-0.009 Sum_probs=29.4
Q ss_pred cccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcc
Q 003425 412 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (821)
Q Consensus 412 ~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~f 462 (821)
...+.||..+-..--...++++|++|++++.. +|+ ...+.+||++
T Consensus 57 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v---~g~---~~~l~~GD~i 101 (166)
T 3jzv_A 57 YFEVGPGGHSTLERHQHAHGVMILKGRGHAMV---GRA---VSAVAPYDLV 101 (166)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEECEEEEE---TTE---EEEECTTCEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE---CCE---EEEeCCCCEE
Confidence 34566776543333345679999999998765 343 3457888854
No 218
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=30.33 E-value=12 Score=31.24 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=37.9
Q ss_pred eEEEcCccHHHHHHHHHhHcCCCCCccc-ccCCCceeee---eeeeecCCeEEEeec
Q 003425 767 IVLWIPQNIKDLIKTAAEQLDFRGGDCI-LSSEGGKILD---VDMINDDQKLYLIQE 819 (821)
Q Consensus 767 ~~~~lp~~~~~l~~~~~~~~~~~~~~~~-~~~~g~~~~~---~~~~r~~~~~~~~~~ 819 (821)
+.--.-.+++||+..+.++|+...+..+ +.+||-+++| +...-||..+.+++.
T Consensus 48 k~GV~A~SL~EL~~K~~~~l~l~~~~~lvLeeDGT~VddEeYF~tLp~nT~lmvL~~ 104 (122)
T 1d4b_A 48 RKGLTAATRQELLAKALETLLLNGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQS 104 (122)
T ss_dssp EEEEEECCSSTHHHHHHHHHSCCSSCEEEETTTTEEECSTHHHHHSSSCCCCCEECS
T ss_pred EEeEEcCCHHHHHHHHHHHhccCCCcEEEEEeCCcEEechhHhhcCCCCCEEEEecC
Confidence 3334457899999999999999645444 7789999966 555667776666543
No 219
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=29.96 E-value=73 Score=25.69 Aligned_cols=45 Identities=27% Similarity=0.290 Sum_probs=30.3
Q ss_pred cccccccCeEEcc--CCc-cCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcc
Q 003425 412 EEFFLPGEVIMEK--GNV-VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (821)
Q Consensus 412 ~~~~~~~e~I~~~--g~~-~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~f 462 (821)
...+.||..+-.. --. ..++++|++|.+.+.. +++ ...+.+||.+
T Consensus 25 ~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~---~~~---~~~l~~Gd~~ 72 (113)
T 2gu9_A 25 EMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV---DGH---TQALQAGSLI 72 (113)
T ss_dssp EEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE---TTE---EEEECTTEEE
T ss_pred EEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE---CCE---EEEeCCCCEE
Confidence 3467788765443 223 5689999999998775 333 2457888854
No 220
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=29.48 E-value=48 Score=35.86 Aligned_cols=60 Identities=8% Similarity=0.137 Sum_probs=42.9
Q ss_pred HHHHHHhcccccccccCeEEccC-CccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcc
Q 003425 403 INQIVIRLHEEFFLPGEVIMEKG-NVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (821)
Q Consensus 403 l~~l~~~~~~~~~~~~e~I~~~g-~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~f 462 (821)
+..+-..+....+.||-.+-..- ..++++++|++|.+.+...+.+|+......+.+||+|
T Consensus 367 L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~ 427 (510)
T 3c3v_A 367 LRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVL 427 (510)
T ss_dssp HHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred cccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEE
Confidence 33444456667888888654332 3367999999999999887777776555679999965
No 221
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=29.03 E-value=1.1e+02 Score=27.21 Aligned_cols=68 Identities=19% Similarity=0.043 Sum_probs=39.5
Q ss_pred cccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEE-ecceEEEEe
Q 003425 412 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQV-CELCRLLRI 488 (821)
Q Consensus 412 ~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a-~~~~~~~~i 488 (821)
...+.||..+-..--...++++|++|.+.+.. +++ ...+.+||++= +-.+.+....... .+++.++.+
T Consensus 60 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i---~~~---~~~l~~Gd~i~---ip~~~~H~~~n~~~~~~~~~l~i 128 (167)
T 3ibm_A 60 YFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL---DDR---VEPLTPLDCVY---IAPHAWHQIHATGANEPLGFLCI 128 (167)
T ss_dssp EEEECTTCBCCCBBCSSCEEEEEEESEEEEEE---TTE---EEEECTTCEEE---ECTTCCEEEEEESSSCCEEEEEE
T ss_pred EEEECCCCCCCCccCCCcEEEEEEeCEEEEEE---CCE---EEEECCCCEEE---ECCCCcEEEEeCCCCCCEEEEEE
Confidence 34566666543333346789999999998775 333 35678988653 2224454443333 345555544
No 222
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=28.83 E-value=38 Score=29.75 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 003425 178 LLWIRLYRVRKVSQFFHK 195 (821)
Q Consensus 178 l~llrl~rl~r~~~~~~~ 195 (821)
++++|++|+.|+.+.++.
T Consensus 106 lr~lRvlRllRv~Rllrl 123 (147)
T 2kyh_A 106 LAGLGLFRLVRLLRFLRI 123 (147)
T ss_dssp HHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555554443
No 223
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=28.77 E-value=59 Score=35.08 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=42.6
Q ss_pred HHHHHHhcccccccccCeEEccC-CccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccc
Q 003425 403 INQIVIRLHEEFFLPGEVIMEKG-NVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (821)
Q Consensus 403 l~~l~~~~~~~~~~~~e~I~~~g-~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fG 463 (821)
+..+-..+....+.||-.+-..- ..++++++|++|.+.+...+.+|+......+.+||+|=
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~v 423 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLLV 423 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEEE
Confidence 34444556667888887654332 34679999999999988777766654446799999653
No 224
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=28.28 E-value=16 Score=37.77 Aligned_cols=15 Identities=7% Similarity=-0.028 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 003425 174 AVRYLLWIRLYRVRK 188 (821)
Q Consensus 174 ~~~~l~llrl~rl~r 188 (821)
.+|++|++|+.|..+
T Consensus 99 ~lr~~R~lrl~r~~~ 113 (355)
T 3beh_A 99 LYCAVWLLKPLRDST 113 (355)
T ss_dssp GGGGGGGSHHHHTCS
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555556655433
No 225
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=28.19 E-value=90 Score=25.90 Aligned_cols=71 Identities=14% Similarity=-0.022 Sum_probs=39.1
Q ss_pred cccccccccCeEEccCCc-cCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEEecceEEEEe
Q 003425 410 LHEEFFLPGEVIMEKGNV-VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 488 (821)
Q Consensus 410 ~~~~~~~~~e~I~~~g~~-~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i 488 (821)
+....+.||..+-..--. ..++++|++|++.+.. .+|+. ..+++||.+= +-.+.+........+++.++.+
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~--~~~~~---~~l~~Gd~~~---i~~~~~H~~~n~~~~~~~~l~v 112 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ--GNGIV---THLKAGDIAI---AKPGQVHGAMNSGPEPFIFVSV 112 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEEC--STTCE---EEEETTEEEE---ECTTCCCEEEECSSSCEEEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEE--CCCeE---EEeCCCCEEE---ECCCCEEEeEeCCCCCEEEEEE
Confidence 334567777765433333 3678999999998753 13332 4578888542 2234455433333344554443
No 226
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=27.90 E-value=61 Score=35.02 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=44.9
Q ss_pred HHHHHHhcccccccccCeEEcc-CCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcc
Q 003425 403 INQIVIRLHEEFFLPGEVIMEK-GNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (821)
Q Consensus 403 l~~l~~~~~~~~~~~~e~I~~~-g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~f 462 (821)
+..|-..+....+.||-++-.. .-.++++.+|++|.+++...+++|+......+.+||+|
T Consensus 389 L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~ 449 (531)
T 3fz3_A 389 LRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLF 449 (531)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred cccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEE
Confidence 4444445667788888876433 23467999999999999888888877667789999966
No 227
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=26.93 E-value=87 Score=25.24 Aligned_cols=45 Identities=13% Similarity=0.023 Sum_probs=29.9
Q ss_pred cccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccc
Q 003425 412 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (821)
Q Consensus 412 ~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fG 463 (821)
...+.||..-.. -...++++|++|++.+.. .+|.. ..+++||.+-
T Consensus 35 ~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i--~~g~~---~~l~~GD~i~ 79 (101)
T 1o5u_A 35 IWEKEVSEFDWY--YDTNETCYILEGKVEVTT--EDGKK---YVIEKGDLVT 79 (101)
T ss_dssp EEEECSEEEEEE--CSSCEEEEEEEEEEEEEE--TTCCE---EEEETTCEEE
T ss_pred EEEeCCCccccc--CCceEEEEEEeCEEEEEE--CCCCE---EEECCCCEEE
Confidence 445667765443 346789999999998875 11332 4588998653
No 228
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=26.80 E-value=1.7e+02 Score=26.51 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=30.8
Q ss_pred ccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEE
Q 003425 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYF 433 (821)
Q Consensus 389 l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~ 433 (821)
.-++|.|.+++.....+++.. .+|+.|+++...++++.+
T Consensus 11 ~I~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~lti 49 (178)
T 2xp1_A 11 FYKHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYCVL 49 (178)
T ss_dssp GGGSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEEEE
T ss_pred eccCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcEEE
Confidence 346799999999888887777 259999999988776433
No 229
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=25.75 E-value=50 Score=21.11 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=17.2
Q ss_pred HhhhHHHHhhcCCHHHHHHHHH
Q 003425 539 LALKVNSAAYHGDLYQLEGLIR 560 (821)
Q Consensus 539 ~~~~L~~A~~~g~~~~v~~Ll~ 560 (821)
..--+..||..||++.++.|-.
T Consensus 13 iEQqiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 13 IRKQMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHH
Confidence 3445788999999999988743
No 230
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=25.72 E-value=69 Score=26.67 Aligned_cols=77 Identities=14% Similarity=0.184 Sum_probs=44.7
Q ss_pred ccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEEecc-eEEEEe-
Q 003425 411 HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCEL-CRLLRI- 488 (821)
Q Consensus 411 ~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~-~~~~~i- 488 (821)
....+.||..+-..--...++++|++|.+.+.. +++. ..+.+|+.+=- -.+.+.. +.+.++ |.++.+
T Consensus 44 ~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~---~~~~---~~l~~Gd~~~i---p~~~~H~--~~~~~~~~~~l~v~ 112 (126)
T 4e2g_A 44 NWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI---GEET---RVLRPGMAYTI---PGGVRHR--ARTFEDGCLVLDIF 112 (126)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEEECEEEEE---TTEE---EEECTTEEEEE---CTTCCEE--EECCTTCEEEEEEE
T ss_pred EEEEECCCCcCCCccCCCceEEEEEEeEEEEEE---CCEE---EEeCCCCEEEE---CCCCcEE--eEECCCCEEEEEEE
Confidence 345677777654433345789999999998876 3432 46788885421 1233433 334444 554433
Q ss_pred --chHhHHHHHH
Q 003425 489 --DKQSFTNIID 498 (821)
Q Consensus 489 --~~~~f~~~l~ 498 (821)
++++|.+.++
T Consensus 113 ~p~~~d~~~~~~ 124 (126)
T 4e2g_A 113 SPPREDYARMAE 124 (126)
T ss_dssp ESCCHHHHHHHH
T ss_pred CCCCcchhhhhc
Confidence 4566665543
No 231
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=25.56 E-value=83 Score=28.85 Aligned_cols=70 Identities=14% Similarity=0.153 Sum_probs=37.8
Q ss_pred cccccCeEEc---cCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEE-EecceEEEEe
Q 003425 414 FFLPGEVIME---KGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQ-VCELCRLLRI 488 (821)
Q Consensus 414 ~~~~~e~I~~---~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~-a~~~~~~~~i 488 (821)
.+.||...-. ......++++|++|.+.+.. . ++.......+.+||++-- -.+.++.+... ..++|+++.+
T Consensus 123 ~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~-~-~~~~~~~~~l~~GD~~~~---~~~~~H~~~n~~~~~~~~~l~v 196 (198)
T 2bnm_A 123 DVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKW-G-DKENPKEALLPTGASMFV---EEHVPHAFTAAKGTGSAKLIAV 196 (198)
T ss_dssp EECCCCGGGCCCCCCCSSCEEEEEEESCEEEEE-S-CTTSCEEEEECTTCEEEE---CTTCCEEEEESTTSCCEEEEEE
T ss_pred EEcCCCCCcccccccCCCeEEEEEEeeeEEEEE-C-CcCCcccEEECCCCEEEe---CCCCceEEEecCCCCCeEEEEE
Confidence 5566654321 22234689999999999876 2 111112456899996532 12444433322 2245665554
No 232
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=25.50 E-value=79 Score=25.43 Aligned_cols=68 Identities=12% Similarity=0.051 Sum_probs=39.2
Q ss_pred ccccCeEEccCCccCeEEEEEeeEEEEEeeccCC-ccceEEEeCCCCccccccccccCCcceEEEEecceEEEEechHhH
Q 003425 415 FLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG-TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSF 493 (821)
Q Consensus 415 ~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g-~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i~~~~f 493 (821)
..||+......+...++++|++|.+.+.. ++ + ...+.+||.+= +-.+.+..... .+++.++.+.....
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~---~~~~---~~~l~~Gd~~~---ip~~~~H~~~~--~~~~~~l~i~~~~~ 103 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDF---ADGG---SMTIREGEMAV---VPKSVSHRPRS--ENGCSLVLIELSDP 103 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEE---TTSC---EEEECTTEEEE---ECTTCCEEEEE--EEEEEEEEEECC--
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEE---CCCc---EEEECCCCEEE---ECCCCcEeeEe--CCCeEEEEEECCCc
Confidence 34555432333333789999999998775 33 3 34588988653 22355554433 45677777765543
No 233
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=24.77 E-value=77 Score=28.45 Aligned_cols=61 Identities=8% Similarity=0.062 Sum_probs=38.0
Q ss_pred CccCeEEEEEeeEEEEEeeccCC---ccceEEEeCCCCccccccccccCCcceEEEEecceEEEEechHh
Q 003425 426 NVVDQLYFVCLGKLEEVGIEENG---TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQS 492 (821)
Q Consensus 426 ~~~~~ly~I~~G~v~~~~~~~~g---~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i~~~~ 492 (821)
+..++++++++|.+.+-..+ +| .+..--.+++||+|=-. .+.|. +-++.+++..+.+.+..
T Consensus 52 ~~~eE~Fy~lkG~m~l~v~d-~g~~~~~~~dv~i~eGdmfllP---~gvpH--sP~r~~e~v~lviErkR 115 (176)
T 1zvf_A 52 NPTPEWFYQKKGSMLLKVVD-ETDAEPKFIDIIINEGDSYLLP---GNVPH--SPVRFADTVGIVVEQDR 115 (176)
T ss_dssp CSSCEEEEEEESCEEEEEEE-CSSSSCEEEEEEECTTEEEEEC---TTCCE--EEEECTTCEEEEEEECC
T ss_pred CCCceEEEEEeCEEEEEEEc-CCCcccceeeEEECCCCEEEcC---CCCCc--CCcccCCcEEEEEEecC
Confidence 44568999999999887654 34 11223458898876422 24444 33345778888776543
No 234
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=24.74 E-value=1.3e+02 Score=31.01 Aligned_cols=51 Identities=24% Similarity=0.318 Sum_probs=40.1
Q ss_pred HHHHhhcCCHHHHHHHHHcCCCCCCC--------------CCCCCcHHHHHHHcCCHHHHHHHHH
Q 003425 543 VNSAAYHGDLYQLEGLIRAGADPNRT--------------DYDGRSPLHLAASRGYEEIMTFLIQ 593 (821)
Q Consensus 543 L~~A~~~g~~~~v~~Ll~~g~~~n~~--------------d~~g~t~L~~A~~~g~~~~v~~Ll~ 593 (821)
-+..+..|+...|+..+..|.|++.+ -.-|.|.+|+|++..+.+++..|+.
T Consensus 26 ac~gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 26 ACVGVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred HhHHHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhh
Confidence 34556789999999999999887643 1347888888888888888888876
No 235
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=24.38 E-value=73 Score=27.47 Aligned_cols=65 Identities=8% Similarity=0.126 Sum_probs=38.8
Q ss_pred EccCCccCeEEEEEeeEEEEEeeccC--CccceEEEeCCCCccccccccccCCcceEEEEecceEEEEechH
Q 003425 422 MEKGNVVDQLYFVCLGKLEEVGIEEN--GTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQ 491 (821)
Q Consensus 422 ~~~g~~~~~ly~I~~G~v~~~~~~~~--g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i~~~ 491 (821)
++.-+..|++|+|++|.+.+...+.+ +.+.-.-.+.+|+++=-. .|. --.-.|.++|.++.|...
T Consensus 44 ~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVP---kGv--eH~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 44 LEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVP---AEC--WFYSITQKDTKMMYVQDS 110 (140)
T ss_dssp EEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEEC---TTC--EEEEEECTTCEEEEEEES
T ss_pred hccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeC---CCc--cCcccCCCceEEEEEEeC
Confidence 44556679999999999988764321 111123457888865321 111 123456778888877543
No 236
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=23.69 E-value=57 Score=25.85 Aligned_cols=48 Identities=21% Similarity=0.109 Sum_probs=28.7
Q ss_pred cccccccCeEEccCCcc-CeEEEEEeeEEEEEeeccCCccceEEEeCCCCccc
Q 003425 412 EEFFLPGEVIMEKGNVV-DQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (821)
Q Consensus 412 ~~~~~~~e~I~~~g~~~-~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fG 463 (821)
...++||...-..--.. +.+++|++|.+++.. .+|. ....+.+||.+=
T Consensus 22 ~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~--~~g~--~~~~l~~Gd~~~ 70 (97)
T 2fqp_A 22 EWRFPPGGETGWHRHSMDYVVVPMTTGPLLLET--PEGS--VTSQLTRGVSYT 70 (97)
T ss_dssp EEEECTTCBCCSEECCSCEEEEESSCEEEEEEE--TTEE--EEEEECTTCCEE
T ss_pred EEEECCCCCCCCEECCCCcEEEEEeecEEEEEe--CCCC--EEEEEcCCCEEE
Confidence 34567776542221223 359999999998765 2221 234689998663
No 237
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=23.51 E-value=82 Score=27.83 Aligned_cols=45 Identities=9% Similarity=-0.104 Sum_probs=29.0
Q ss_pred cccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcc
Q 003425 412 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (821)
Q Consensus 412 ~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~f 462 (821)
...+.||..+-..--...++++|++|++++.. +|+ ...+.+||++
T Consensus 48 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v---~g~---~~~l~~Gd~i 92 (156)
T 3kgz_A 48 YFEVDEGGYSTLERHAHVHAVMIHRGHGQCLV---GET---ISDVAQGDLV 92 (156)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEEEEEEEE---TTE---EEEEETTCEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE---CCE---EEEeCCCCEE
Confidence 33556766543333345679999999999875 443 3457888854
No 238
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=23.39 E-value=75 Score=28.25 Aligned_cols=45 Identities=18% Similarity=0.090 Sum_probs=28.7
Q ss_pred cccccccCeEE--ccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcc
Q 003425 412 EEFFLPGEVIM--EKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (821)
Q Consensus 412 ~~~~~~~e~I~--~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~f 462 (821)
...+.||.... ......+++++|++|++.+.. +++ ...+.+||.+
T Consensus 47 ~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~---~~~---~~~l~~GD~i 93 (163)
T 3i7d_A 47 LVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD---DQG---EHPMVPGDCA 93 (163)
T ss_dssp EEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE---TTE---EEEECTTCEE
T ss_pred EEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE---CCE---EEEeCCCCEE
Confidence 34566776432 222233689999999999876 333 3458888854
No 239
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=22.56 E-value=87 Score=28.13 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=37.0
Q ss_pred ccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEEec-ceEEEEechHh
Q 003425 427 VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCE-LCRLLRIDKQS 492 (821)
Q Consensus 427 ~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~-~~~~~~i~~~~ 492 (821)
..++++++++|.+.+-..+ +|+.. --.+++||+|=-. .+.+. +-++.+ +|..+.+.+..
T Consensus 54 ~~dE~FyvlkG~m~i~v~d-~g~~~-~v~l~eGE~f~lP---~gvpH--~P~r~~~e~~~lviE~~r 113 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWV-DGRRE-RADLKEGDIFLLP---PHVRH--SPQRPEAGSACLVIERQR 113 (174)
T ss_dssp SSCEEEEEEESCEEEEEEE-TTEEE-EEEECTTCEEEEC---TTCCE--EEEBCCTTCEEEEEEECC
T ss_pred CCceEEEEEeeEEEEEEEc-CCcee-eEEECCCCEEEeC---CCCCc--CccccCCCCEEEEEEeCC
Confidence 4678999999999877643 34322 3458999876422 24444 333455 77777776543
No 240
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=22.55 E-value=91 Score=26.09 Aligned_cols=45 Identities=20% Similarity=0.162 Sum_probs=28.7
Q ss_pred cccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcc
Q 003425 412 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (821)
Q Consensus 412 ~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~f 462 (821)
...+.||...-..--...++++|++|.+.+.. +++. ..+.+||.+
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~~---~~l~~Gd~i 96 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK---EQGE---ETVEEGFYI 96 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEEC---SSCE---EEEETTEEE
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEEE---CCEE---EEECCCCEE
Confidence 34556666543333336689999999998765 3433 457788854
No 241
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=22.48 E-value=1.1e+02 Score=28.39 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=33.2
Q ss_pred ccccccccCeEEcc-CCccCeEEEEEeeEEEEEeeccC--CccceEEEeCCCCccc
Q 003425 411 HEEFFLPGEVIMEK-GNVVDQLYFVCLGKLEEVGIEEN--GTEDYVSYLHPNSSFG 463 (821)
Q Consensus 411 ~~~~~~~~e~I~~~-g~~~~~ly~I~~G~v~~~~~~~~--g~~~~i~~l~~G~~fG 463 (821)
....+.||...-.. .....++++|++|++++...+.+ |.+.....+.+||.+=
T Consensus 75 ~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~ 130 (201)
T 1fi2_A 75 NRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFV 130 (201)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEE
T ss_pred EEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEE
Confidence 34567777754322 23357999999999988654332 1332356689998653
No 242
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=22.04 E-value=1.8e+02 Score=27.46 Aligned_cols=67 Identities=22% Similarity=0.162 Sum_probs=43.1
Q ss_pred cccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEE-ecceEEEE
Q 003425 410 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQV-CELCRLLR 487 (821)
Q Consensus 410 ~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a-~~~~~~~~ 487 (821)
+....+.||..+-..--..+.+++|++|++++.. +|+. ..+.+||++=- -.+.+. .+.+ .++++++.
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i---~g~~---~~l~~Gd~i~i---p~~~~H--~~~~~~~~~~~ll 222 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV---DGKP---FIVKKGESAVL---PANIPH--AVEAETENFKMLL 222 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE---TTEE---EEEETTEEEEE---CTTSCE--EEECCSSCEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE---CCEE---EEECCCCEEEE---CCCCcE--EEEeCCCCEEEEE
Confidence 3456778888876544456689999999998875 4442 45788885432 123444 4555 67776654
No 243
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=22.02 E-value=1.2e+02 Score=24.88 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhhccccCc
Q 003425 264 KSYITSMYASVVTMTTVGYGD 284 (821)
Q Consensus 264 ~~Y~~s~yw~~~t~tTvGyGd 284 (821)
.....|+.--...+|+=|+.+
T Consensus 37 ~~~~~s~ltLF~i~T~e~W~~ 57 (112)
T 4f4l_A 37 GDLSKSLYTLFQVMTLESWSM 57 (112)
T ss_dssp SSHHHHHHHHHHHHTTTTCCC
T ss_pred cCHHHHHHHHHHHHHccccHH
Confidence 345566665566667767654
No 244
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=21.87 E-value=82 Score=32.32 Aligned_cols=50 Identities=10% Similarity=0.109 Sum_probs=34.2
Q ss_pred cccccccCeEEcc-CCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcc
Q 003425 412 EEFFLPGEVIMEK-GNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (821)
Q Consensus 412 ~~~~~~~e~I~~~-g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~f 462 (821)
...+.||...-.. ....+++++|++|++++...+.+|... ...+++||++
T Consensus 56 ~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~-~~~l~~GD~~ 106 (361)
T 2vqa_A 56 YMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVE-IADVDKGGLW 106 (361)
T ss_dssp EEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEE-EEEEETTEEE
T ss_pred EEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEE-EEEEcCCCEE
Confidence 4456777764332 233789999999999988766666433 3568899854
No 245
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=21.35 E-value=82 Score=32.71 Aligned_cols=51 Identities=10% Similarity=0.113 Sum_probs=34.4
Q ss_pred ccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcc
Q 003425 411 HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (821)
Q Consensus 411 ~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~f 462 (821)
....+.||..+-..--...++++|++|++++...+.+|+.. ...+++||++
T Consensus 82 ~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~-~~~l~~GD~~ 132 (385)
T 1j58_A 82 VNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSF-IDDVGEGDLW 132 (385)
T ss_dssp EEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEE-EEEEETTEEE
T ss_pred EEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEE-EEEeCCCCEE
Confidence 34566788765333233679999999999988766556532 2368898854
No 246
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
Probab=21.03 E-value=3.1e+02 Score=26.65 Aligned_cols=77 Identities=12% Similarity=-0.013 Sum_probs=53.1
Q ss_pred hcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEE-eCCCCccccc---cccccCCcceEEEEecceE
Q 003425 409 RLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSY-LHPNSSFGEV---SILCNIPQPYTVQVCELCR 484 (821)
Q Consensus 409 ~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~-l~~G~~fGe~---~~~~~~~~~~~~~a~~~~~ 484 (821)
.+....+++|+.+-.+-+...-..+++.|.+.+.. +|.. ... -...+.|.+. ++.-.....+++.|.++++
T Consensus 30 ~f~~~~L~~Ge~~~~~~~~~E~~iv~l~G~~~V~~---~g~~--~~~~g~R~svF~~~~p~~lYvp~g~~v~i~a~~~~~ 104 (270)
T 2qjv_A 30 GFDVWQLXAGESITLPSDERERCLVLVAGLASVXA---ADSF--FYRIGQRMSPFERIPAYSVYLPHHTEAXVTAETDLE 104 (270)
T ss_dssp EEEEEEECTTCEEEECCSSEEEEEEEEESCEEEEE---TTEE--EEEECCCSSGGGCSCCCEEEECSSCCEEEEESSSEE
T ss_pred EEEEEEecCCCEEEecCCCcEEEEEEecceEEEEE---CCEE--EeccccccccccCCCCcEEEECCCCEEEEEecCCce
Confidence 35566778999877666655566777899998776 4432 222 2456778765 4555555588999999999
Q ss_pred EEEech
Q 003425 485 LLRIDK 490 (821)
Q Consensus 485 ~~~i~~ 490 (821)
++..+.
T Consensus 105 ~~v~sA 110 (270)
T 2qjv_A 105 LAVCSA 110 (270)
T ss_dssp EEEEEE
T ss_pred EEEEee
Confidence 887654
No 247
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=20.92 E-value=2.2e+02 Score=23.50 Aligned_cols=79 Identities=13% Similarity=-0.021 Sum_probs=42.6
Q ss_pred ccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEEecceEE--EEech
Q 003425 413 EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRL--LRIDK 490 (821)
Q Consensus 413 ~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~--~~i~~ 490 (821)
..+.||...-..--...++++|.+|.+.+.. +++ ...+++||.+=- -.+.+........++++. +.++.
T Consensus 39 ~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i---~~~---~~~l~~Gd~~~i---~~~~~H~~~~~~~~~~~~~~i~f~~ 109 (128)
T 4i4a_A 39 CIVRPETKSFRHSHNEYELFIVIQGNAIIRI---NDE---DFPVTKGDLIII---PLDSEHHVINNNQEDFHFYTIWWDK 109 (128)
T ss_dssp EEECTTEECCCBCCSSEEEEEEEESEEEEEE---TTE---EEEEETTCEEEE---CTTCCEEEEECSSSCEEEEEEEECH
T ss_pred EEECCCCccCCEecCCeEEEEEEeCEEEEEE---CCE---EEEECCCcEEEE---CCCCcEEeEeCCCCCEEEEEEEECH
Confidence 3455555332222235579999999998776 443 345788885431 124444333322344443 44566
Q ss_pred HhHHHHHHHh
Q 003425 491 QSFTNIIDIY 500 (821)
Q Consensus 491 ~~f~~~l~~~ 500 (821)
+-+..++...
T Consensus 110 ~~~~~~~~~~ 119 (128)
T 4i4a_A 110 ESTLNFLTRL 119 (128)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 6666555543
No 248
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=20.90 E-value=1.5e+02 Score=25.63 Aligned_cols=69 Identities=19% Similarity=0.068 Sum_probs=38.5
Q ss_pred cccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEEecceEEEEe
Q 003425 412 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 488 (821)
Q Consensus 412 ~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i 488 (821)
...+.||..+-..--...++++|++|.+.+.. +++. ...+.+||.+= +-.+.+........+.+.++.+
T Consensus 52 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~---~~~~--~~~l~~Gd~i~---ip~~~~H~~~n~~~~~~~~l~v 120 (147)
T 2f4p_A 52 DVVFEPGARTHWHSHPGGQILIVTRGKGFYQE---RGKP--ARILKKGDVVE---IPPNVVHWHGAAPDEELVHIGI 120 (147)
T ss_dssp EEEECTTCEECSEECTTCEEEEEEEEEEEEEE---TTSC--CEEEETTCEEE---ECTTCCEEEEEBTTBCEEEEEE
T ss_pred EEEECCCCccCceECCCceEEEEEeCEEEEEE---CCEE--EEEECCCCEEE---ECCCCcEEeEeCCCCCEEEEEE
Confidence 34566776553222234689999999998775 3332 13478888653 2224454443333344555544
No 249
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=20.84 E-value=60 Score=34.54 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=37.7
Q ss_pred cccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccc
Q 003425 410 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (821)
Q Consensus 410 ~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fG 463 (821)
+....+.||..+-..-...+++++|++|+..+...++++. ....+++||.+-
T Consensus 88 ~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~--~~~~l~~GDv~~ 139 (445)
T 2cav_A 88 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR--DTYKLDQGDAIK 139 (445)
T ss_dssp EEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEE--EEEEEETTEEEE
T ss_pred EEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCC--EEEEecCCCEEE
Confidence 4456888888766555556799999999998876555443 356789999653
No 250
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=20.39 E-value=96 Score=33.06 Aligned_cols=60 Identities=5% Similarity=0.121 Sum_probs=43.8
Q ss_pred HHHHHHhcccccccccCeEEccC-CccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcc
Q 003425 403 INQIVIRLHEEFFLPGEVIMEKG-NVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (821)
Q Consensus 403 l~~l~~~~~~~~~~~~e~I~~~g-~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~f 462 (821)
+..+-..+....+.||-+....= -.+.++++|++|.+++...+.+|+...-..+.+||.|
T Consensus 317 L~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv~ 377 (459)
T 2e9q_A 317 LRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVL 377 (459)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ccccccceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCcEE
Confidence 44444556667788887654332 3467999999999999988888866555679999965
No 251
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=20.04 E-value=1.3e+02 Score=31.22 Aligned_cols=74 Identities=11% Similarity=-0.068 Sum_probs=42.7
Q ss_pred ccccccccCeEEccCCcc-CeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEEecceEEEEe
Q 003425 411 HEEFFLPGEVIMEKGNVV-DQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 488 (821)
Q Consensus 411 ~~~~~~~~e~I~~~g~~~-~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i 488 (821)
....+.||...-..--.. .++++|++|++++.....+|+.. ...+++||.|=-. .+.++.......+++.++.+
T Consensus 260 ~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~-~~~l~~GD~~~ip---~~~~H~~~n~~~~~~~~l~v 334 (385)
T 1j58_A 260 ALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHAR-TFNYQAGDVGYVP---FAMGHYVENIGDEPLVFLEI 334 (385)
T ss_dssp EEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEE-EEEEESSCEEEEC---TTCBEEEEECSSSCEEEEEE
T ss_pred EEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEE-EEEEcCCCEEEEC---CCCeEEEEECCCCCEEEEEE
Confidence 345677887654333334 78999999999877644555422 3458899865321 23333332222345665555
Done!