Query 003426
Match_columns 821
No_of_seqs 537 out of 2495
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 23:12:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003426.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003426hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5077 Ubiquitin carboxyl-ter 100.0 1E-148 3E-153 1218.4 30.4 739 48-808 34-795 (1089)
2 KOG1863 Ubiquitin carboxyl-ter 100.0 1.5E-92 3.2E-97 869.1 18.7 735 54-815 28-779 (1093)
3 cd02659 peptidase_C19C A subfa 100.0 8.2E-59 1.8E-63 512.4 33.1 320 195-522 1-333 (334)
4 cd02668 Peptidase_C19L A subfa 100.0 9.2E-58 2E-62 501.3 31.0 307 198-519 1-324 (324)
5 KOG4598 Putative ubiquitin-spe 100.0 3.5E-58 7.5E-63 499.9 17.1 480 191-729 82-634 (1203)
6 cd02664 Peptidase_C19H A subfa 100.0 1.2E-56 2.6E-61 492.5 28.0 286 198-519 1-327 (327)
7 cd02663 Peptidase_C19G A subfa 100.0 3.2E-56 6.8E-61 483.9 27.9 276 198-519 1-300 (300)
8 cd02671 Peptidase_C19O A subfa 100.0 1.7E-55 3.7E-60 481.3 28.0 285 189-519 17-332 (332)
9 KOG1865 Ubiquitin carboxyl-ter 100.0 6E-56 1.3E-60 483.6 20.3 297 187-521 100-410 (545)
10 cd02657 Peptidase_C19A A subfa 100.0 3.5E-54 7.7E-59 469.5 27.6 288 198-519 1-305 (305)
11 cd02660 Peptidase_C19D A subfa 100.0 6.5E-54 1.4E-58 472.2 27.8 290 197-519 1-328 (328)
12 cd02667 Peptidase_C19K A subfa 100.0 1.4E-53 3E-58 458.2 22.6 242 198-484 1-270 (279)
13 KOG1866 Ubiquitin carboxyl-ter 100.0 1.4E-54 3E-59 477.6 5.8 330 189-526 88-439 (944)
14 cd02661 Peptidase_C19E A subfa 100.0 1.9E-51 4E-56 447.5 25.4 277 197-484 2-295 (304)
15 cd02658 Peptidase_C19B A subfa 100.0 3E-50 6.4E-55 439.8 27.2 273 198-519 1-311 (311)
16 cd02669 Peptidase_C19M A subfa 100.0 2.8E-50 6.1E-55 457.2 28.0 294 191-519 114-440 (440)
17 cd02662 Peptidase_C19F A subfa 100.0 2.1E-48 4.6E-53 408.5 23.4 203 198-483 1-229 (240)
18 cd02666 Peptidase_C19J A subfa 100.0 3.6E-49 7.7E-54 430.7 16.4 269 196-519 1-343 (343)
19 cd02665 Peptidase_C19I A subfa 100.0 2.3E-48 5E-53 398.7 19.9 220 198-519 1-228 (228)
20 COG5533 UBP5 Ubiquitin C-termi 100.0 1.9E-44 4.2E-49 363.3 19.1 281 195-521 70-414 (415)
21 cd02674 Peptidase_C19R A subfa 100.0 2E-44 4.2E-49 376.5 19.9 211 198-482 1-219 (230)
22 COG5560 UBP12 Ubiquitin C-term 100.0 3.5E-45 7.6E-50 398.0 10.8 297 192-522 261-823 (823)
23 PF12436 USP7_ICP0_bdg: ICP0-b 100.0 7E-43 1.5E-47 365.4 15.0 189 621-813 1-189 (249)
24 PF00443 UCH: Ubiquitin carbox 100.0 8.9E-42 1.9E-46 362.4 21.7 245 196-518 1-269 (269)
25 cd02673 Peptidase_C19Q A subfa 100.0 2.1E-40 4.6E-45 346.5 19.6 230 199-519 2-245 (245)
26 KOG0944 Ubiquitin-specific pro 100.0 5.5E-40 1.2E-44 361.0 18.6 221 192-420 303-546 (763)
27 KOG1868 Ubiquitin C-terminal h 100.0 1.5E-40 3.4E-45 380.0 13.0 303 190-526 295-651 (653)
28 cd02257 Peptidase_C19 Peptidas 100.0 2.5E-38 5.3E-43 331.5 23.0 238 198-519 1-255 (255)
29 KOG1867 Ubiquitin-specific pro 100.0 4.9E-38 1.1E-42 354.2 16.0 298 192-522 157-485 (492)
30 cd02672 Peptidase_C19P A subfa 100.0 2E-36 4.2E-41 320.8 21.7 237 185-479 4-260 (268)
31 COG5207 UBP14 Isopeptidase T [ 100.0 1.6E-34 3.6E-39 307.3 17.9 219 196-421 303-537 (749)
32 KOG1873 Ubiquitin-specific pro 100.0 5.2E-36 1.1E-40 332.5 6.0 149 344-520 680-876 (877)
33 PF13423 UCH_1: Ubiquitin carb 100.0 4.8E-31 1E-35 285.8 21.1 266 197-474 1-295 (295)
34 cd02670 Peptidase_C19N A subfa 100.0 1.1E-31 2.5E-36 277.7 14.9 184 198-479 1-221 (241)
35 KOG1864 Ubiquitin-specific pro 100.0 1.7E-31 3.7E-36 305.5 13.2 286 192-484 228-558 (587)
36 KOG1870 Ubiquitin C-terminal h 100.0 2.5E-31 5.3E-36 320.6 14.2 297 190-522 240-842 (842)
37 KOG1872 Ubiquitin-specific pro 99.9 9.4E-28 2E-32 257.9 5.4 294 197-520 106-468 (473)
38 KOG1871 Ubiquitin-specific pro 99.9 3.5E-26 7.6E-31 239.5 12.0 297 196-522 28-420 (420)
39 cd03772 MATH_HAUSP Herpesvirus 99.9 2.1E-24 4.5E-29 206.8 13.9 129 52-182 2-135 (137)
40 cd03775 MATH_Ubp21p Ubiquitin- 99.9 3.8E-24 8.3E-29 204.0 12.8 124 54-178 2-134 (134)
41 KOG2026 Spindle pole body prot 99.9 1.7E-21 3.8E-26 203.3 12.9 276 190-484 128-430 (442)
42 cd03774 MATH_SPOP Speckle-type 99.8 1.5E-20 3.2E-25 180.7 12.5 126 51-181 3-138 (139)
43 cd03773 MATH_TRIM37 Tripartite 99.8 2.5E-20 5.3E-25 177.5 11.0 122 50-178 2-130 (132)
44 cd00270 MATH_TRAF_C Tumor Necr 99.8 1.4E-19 3E-24 176.0 8.3 123 53-177 1-148 (149)
45 cd03776 MATH_TRAF6 Tumor Necro 99.8 4.6E-19 9.9E-24 171.8 7.6 124 53-178 1-147 (147)
46 cd03780 MATH_TRAF5 Tumor Necro 99.8 8.8E-19 1.9E-23 168.5 9.4 125 53-177 1-147 (148)
47 cd00121 MATH MATH (meprin and 99.8 3.9E-18 8.5E-23 159.6 12.8 123 53-178 1-126 (126)
48 cd03779 MATH_TRAF1 Tumor Necro 99.8 1.6E-18 3.5E-23 165.8 9.1 125 53-177 1-146 (147)
49 cd03777 MATH_TRAF3 Tumor Necro 99.8 2.5E-18 5.5E-23 171.2 10.7 127 50-178 36-184 (186)
50 cd03781 MATH_TRAF4 Tumor Necro 99.8 2E-18 4.3E-23 168.4 9.2 123 53-177 1-153 (154)
51 cd03771 MATH_Meprin Meprin fam 99.7 2.2E-17 4.8E-22 160.9 10.7 124 52-177 1-166 (167)
52 PF00917 MATH: MATH domain; I 99.7 8.6E-18 1.9E-22 156.4 6.4 116 59-179 1-119 (119)
53 KOG1275 PAB-dependent poly(A) 99.7 6.1E-17 1.3E-21 184.3 13.5 293 185-484 488-847 (1118)
54 cd03778 MATH_TRAF2 Tumor Necro 99.7 1.1E-16 2.4E-21 154.7 10.5 126 50-177 16-163 (164)
55 smart00061 MATH meprin and TRA 99.6 3.3E-15 7.2E-20 132.9 11.5 93 55-153 2-95 (95)
56 cd03783 MATH_Meprin_Alpha Mepr 99.4 4.7E-13 1E-17 128.9 7.1 123 53-177 2-166 (167)
57 cd03782 MATH_Meprin_Beta Mepri 99.4 9.1E-13 2E-17 126.1 7.7 123 53-177 2-166 (167)
58 PF15499 Peptidase_C98: Ubiqui 98.5 2.8E-07 6.1E-12 93.4 7.5 224 200-473 6-252 (275)
59 KOG1987 Speckle-type POZ prote 98.0 2.4E-05 5.1E-10 85.1 10.5 122 55-184 6-130 (297)
60 KOG1864 Ubiquitin-specific pro 96.1 0.0063 1.4E-07 71.4 5.1 99 199-297 34-154 (587)
61 KOG1887 Ubiquitin carboxyl-ter 94.3 0.011 2.3E-07 69.8 -0.4 191 278-484 550-773 (806)
62 PF11976 Rad60-SLD: Ubiquitin- 93.1 0.15 3.2E-06 42.7 4.5 56 709-772 14-69 (72)
63 PF08715 Viral_protease: Papai 92.9 0.31 6.8E-06 52.9 7.8 100 191-325 97-198 (320)
64 PF14533 USP7_C2: Ubiquitin-sp 92.2 0.72 1.6E-05 47.6 9.2 121 593-733 35-160 (213)
65 PF11543 UN_NPL4: Nuclear pore 92.2 0.3 6.4E-06 42.0 5.2 62 706-773 14-77 (80)
66 PF05408 Peptidase_C28: Foot-a 90.1 0.13 2.8E-06 50.3 1.1 31 449-481 136-166 (193)
67 cd01763 Sumo Small ubiquitin-r 89.8 0.8 1.7E-05 40.0 5.8 73 687-774 9-81 (87)
68 KOG3556 Familial cylindromatos 89.7 0.27 5.8E-06 55.1 3.3 92 196-291 368-470 (724)
69 PF08817 YukD: WXG100 protein 89.2 0.51 1.1E-05 40.4 4.0 61 709-773 16-78 (79)
70 KOG0297 TNF receptor-associate 88.6 0.25 5.4E-06 55.8 2.2 77 49-125 276-365 (391)
71 cd06406 PB1_P67 A PB1 domain i 87.8 1.9 4.2E-05 36.8 6.4 66 594-670 13-78 (80)
72 PF14560 Ubiquitin_2: Ubiquiti 84.8 3.3 7.1E-05 36.1 6.7 67 709-777 17-84 (87)
73 PF00240 ubiquitin: Ubiquitin 84.1 2.4 5.2E-05 34.9 5.3 57 709-774 9-65 (69)
74 cd01805 RAD23_N Ubiquitin-like 83.7 3.5 7.6E-05 34.7 6.3 69 692-775 3-73 (77)
75 cd01796 DDI1_N DNA damage indu 82.6 1.6 3.4E-05 36.5 3.6 33 594-626 12-44 (71)
76 cd01809 Scythe_N Ubiquitin-lik 81.9 3.6 7.8E-05 34.0 5.6 67 691-772 2-68 (72)
77 cd01793 Fubi Fubi ubiquitin-li 81.9 1.8 3.8E-05 36.5 3.7 33 594-626 11-43 (74)
78 PTZ00044 ubiquitin; Provisiona 81.8 1.9 4.1E-05 36.3 3.9 34 593-626 12-45 (76)
79 cd01812 BAG1_N Ubiquitin-like 81.6 1.8 3.9E-05 35.8 3.7 33 594-626 12-44 (71)
80 cd01794 DC_UbP_C dendritic cel 81.5 1.8 3.9E-05 36.1 3.6 33 594-626 11-43 (70)
81 PF12436 USP7_ICP0_bdg: ICP0-b 81.3 2.5 5.4E-05 44.7 5.5 37 593-629 191-227 (249)
82 cd01791 Ubl5 UBL5 ubiquitin-li 81.2 1.9 4.1E-05 36.4 3.6 31 595-625 15-45 (73)
83 cd01807 GDX_N ubiquitin-like d 80.8 3.6 7.8E-05 34.5 5.3 68 691-773 2-69 (74)
84 cd01799 Hoil1_N Ubiquitin-like 80.7 2.3 4.9E-05 36.1 3.9 33 592-624 13-45 (75)
85 cd01806 Nedd8 Nebb8-like ubiq 80.3 4.6 0.0001 33.7 5.8 57 710-775 15-71 (76)
86 cd01807 GDX_N ubiquitin-like d 80.2 2.3 4.9E-05 35.8 3.8 33 594-626 13-45 (74)
87 cd01796 DDI1_N DNA damage indu 80.0 3.5 7.7E-05 34.4 4.9 56 709-773 13-69 (71)
88 cd01798 parkin_N amino-termina 79.8 2.9 6.4E-05 34.6 4.3 53 710-771 13-65 (70)
89 cd01798 parkin_N amino-termina 79.8 2.3 4.9E-05 35.3 3.6 33 594-626 11-43 (70)
90 cd01810 ISG15_repeat2 ISG15 ub 78.3 3.8 8.3E-05 34.4 4.6 57 710-775 13-69 (74)
91 smart00213 UBQ Ubiquitin homol 78.2 3 6.4E-05 33.4 3.8 33 594-626 12-44 (64)
92 cd01806 Nedd8 Nebb8-like ubiq 78.1 3 6.5E-05 34.9 4.0 33 594-626 13-45 (76)
93 cd01803 Ubiquitin Ubiquitin. U 78.1 2.7 5.8E-05 35.2 3.7 33 594-626 13-45 (76)
94 cd01803 Ubiquitin Ubiquitin. U 77.9 4.8 0.0001 33.6 5.2 57 710-775 15-71 (76)
95 PTZ00044 ubiquitin; Provisiona 77.7 5.1 0.00011 33.6 5.3 69 692-775 3-71 (76)
96 PF14560 Ubiquitin_2: Ubiquiti 77.3 4.8 0.0001 35.0 5.1 35 593-627 15-49 (87)
97 cd01789 Alp11_N Ubiquitin-like 77.2 3.4 7.4E-05 35.8 4.1 36 595-630 16-51 (84)
98 cd01809 Scythe_N Ubiquitin-lik 76.4 3.4 7.4E-05 34.1 3.8 34 593-626 12-45 (72)
99 PF00240 ubiquitin: Ubiquitin 76.2 4.2 9.1E-05 33.4 4.2 33 594-626 8-40 (69)
100 cd01808 hPLIC_N Ubiquitin-like 75.0 3.8 8.2E-05 34.1 3.7 32 595-626 13-44 (71)
101 cd01800 SF3a120_C Ubiquitin-li 74.7 3.9 8.5E-05 34.6 3.8 34 593-626 9-42 (76)
102 cd01763 Sumo Small ubiquitin-r 74.4 4.8 0.0001 35.1 4.3 34 593-626 23-56 (87)
103 cd01804 midnolin_N Ubiquitin-l 73.6 3.8 8.1E-05 34.9 3.4 32 594-625 14-45 (78)
104 cd01769 UBL Ubiquitin-like dom 73.4 5.2 0.00011 32.4 4.1 33 594-626 10-42 (69)
105 cd01799 Hoil1_N Ubiquitin-like 73.0 6.1 0.00013 33.5 4.5 59 707-774 14-73 (75)
106 cd01802 AN1_N ubiquitin-like d 72.9 11 0.00023 34.2 6.3 74 687-775 25-98 (103)
107 PF05408 Peptidase_C28: Foot-a 72.3 6.3 0.00014 38.9 4.8 36 192-227 29-65 (193)
108 cd01810 ISG15_repeat2 ISG15 ub 71.8 5 0.00011 33.7 3.7 33 593-625 10-42 (74)
109 cd01797 NIRF_N amino-terminal 71.2 14 0.00031 31.4 6.4 57 712-777 19-75 (78)
110 cd01813 UBP_N UBP ubiquitin pr 70.5 4.8 0.0001 34.0 3.3 32 595-626 13-44 (74)
111 cd01795 USP48_C USP ubiquitin- 70.1 6.8 0.00015 34.8 4.1 34 593-626 16-49 (107)
112 cd01802 AN1_N ubiquitin-like d 70.0 5.6 0.00012 35.9 3.8 33 594-626 40-72 (103)
113 cd01792 ISG15_repeat1 ISG15 ub 69.1 4.9 0.00011 34.4 3.1 31 595-625 16-46 (80)
114 cd01797 NIRF_N amino-terminal 66.8 5.2 0.00011 34.1 2.8 29 598-626 19-47 (78)
115 cd01800 SF3a120_C Ubiquitin-li 66.6 12 0.00025 31.7 4.9 58 710-776 12-69 (76)
116 PF14836 Ubiquitin_3: Ubiquiti 65.6 43 0.00093 29.3 8.1 68 706-778 14-82 (88)
117 cd01805 RAD23_N Ubiquitin-like 65.0 9.4 0.0002 32.1 4.0 33 594-626 13-47 (77)
118 cd01793 Fubi Fubi ubiquitin-li 64.9 12 0.00025 31.4 4.5 55 709-772 12-66 (74)
119 cd01789 Alp11_N Ubiquitin-like 64.1 27 0.00058 30.2 6.7 66 709-777 16-82 (84)
120 cd01795 USP48_C USP ubiquitin- 63.9 30 0.00064 30.9 6.8 65 706-778 15-79 (107)
121 cd01794 DC_UbP_C dendritic cel 60.7 14 0.00031 30.7 4.2 53 710-771 13-65 (70)
122 cd01769 UBL Ubiquitin-like dom 60.7 22 0.00047 28.7 5.4 55 710-773 12-66 (69)
123 cd01812 BAG1_N Ubiquitin-like 58.5 21 0.00046 29.2 5.0 55 710-773 14-68 (71)
124 cd06411 PB1_p51 The PB1 domain 58.1 31 0.00066 29.5 5.7 67 595-670 10-76 (78)
125 smart00213 UBQ Ubiquitin homol 57.2 17 0.00036 28.9 4.1 62 692-769 3-64 (64)
126 PF11976 Rad60-SLD: Ubiquitin- 55.1 21 0.00046 29.5 4.4 34 593-626 12-46 (72)
127 cd01804 midnolin_N Ubiquitin-l 54.3 52 0.0011 27.9 6.8 58 708-775 14-71 (78)
128 KOG1769 Ubiquitin-like protein 53.4 42 0.00091 29.9 6.0 58 709-775 34-91 (99)
129 cd01792 ISG15_repeat1 ISG15 ub 52.5 29 0.00064 29.5 5.0 56 711-773 18-73 (80)
130 PF14836 Ubiquitin_3: Ubiquiti 51.6 32 0.00069 30.1 5.0 37 591-628 13-49 (88)
131 cd01791 Ubl5 UBL5 ubiquitin-li 51.3 29 0.00062 29.2 4.6 53 711-772 17-69 (73)
132 TIGR02958 sec_mycoba_snm4 secr 48.7 49 0.0011 38.3 7.5 78 709-792 15-94 (452)
133 cd00196 UBQ Ubiquitin-like pro 48.3 25 0.00054 26.6 3.7 33 594-626 10-42 (69)
134 PF11543 UN_NPL4: Nuclear pore 44.0 29 0.00063 29.8 3.6 33 592-624 14-46 (80)
135 cd01808 hPLIC_N Ubiquitin-like 43.8 49 0.0011 27.3 4.9 55 709-772 13-67 (71)
136 cd01768 RA RA (Ras-associating 43.7 65 0.0014 27.6 5.9 49 694-743 2-51 (87)
137 cd01813 UBP_N UBP ubiquitin pr 41.9 65 0.0014 27.1 5.4 58 710-773 14-71 (74)
138 PF00788 RA: Ras association ( 41.4 72 0.0016 27.4 5.9 51 693-743 4-55 (93)
139 cd01612 APG12_C Ubiquitin-like 41.4 2E+02 0.0044 25.1 8.5 65 593-672 17-81 (87)
140 cd01612 APG12_C Ubiquitin-like 40.7 51 0.0011 28.8 4.6 34 709-742 19-52 (87)
141 COG5131 URM1 Ubiquitin-like pr 39.5 50 0.0011 28.7 4.2 56 716-776 30-92 (96)
142 PF00789 UBX: UBX domain; Int 39.4 1.2E+02 0.0025 25.8 6.7 78 688-775 5-82 (82)
143 cd01790 Herp_N Homocysteine-re 37.1 37 0.00081 29.1 3.2 30 596-625 18-49 (79)
144 cd01814 NTGP5 Ubiquitin-like N 37.0 28 0.0006 31.9 2.5 41 585-625 9-56 (113)
145 PF02991 Atg8: Autophagy prote 34.0 73 0.0016 28.9 4.7 32 709-740 36-67 (104)
146 TIGR00601 rad23 UV excision re 33.6 96 0.0021 34.9 6.6 71 691-776 2-75 (378)
147 PF14353 CpXC: CpXC protein 33.4 53 0.0011 30.7 3.9 45 316-370 2-46 (128)
148 cd01611 GABARAP Ubiquitin doma 33.1 70 0.0015 29.4 4.5 33 709-741 44-76 (112)
149 cd06410 PB1_UP2 Uncharacterize 32.9 1.6E+02 0.0034 26.4 6.5 31 593-624 24-54 (97)
150 COG5227 SMT3 Ubiquitin-like pr 30.9 1E+02 0.0022 26.9 4.7 34 593-626 36-69 (103)
151 KOG4495 RNA polymerase II tran 30.9 43 0.00093 29.5 2.5 32 599-630 19-50 (110)
152 cd06407 PB1_NLP A PB1 domain i 29.2 2.2E+02 0.0048 24.5 6.7 36 592-627 10-46 (82)
153 COG3478 Predicted nucleic-acid 29.0 44 0.00094 27.2 2.1 34 361-394 3-39 (68)
154 PF00788 RA: Ras association ( 28.2 1.4E+02 0.0031 25.5 5.6 34 592-625 17-52 (93)
155 cd01801 Tsc13_N Ubiquitin-like 28.0 70 0.0015 27.0 3.4 28 599-626 20-48 (77)
156 smart00666 PB1 PB1 domain. Pho 27.8 1.1E+02 0.0024 25.7 4.7 36 592-627 11-46 (81)
157 smart00314 RA Ras association 26.5 2.1E+02 0.0045 24.7 6.3 36 708-743 18-54 (90)
158 PF09379 FERM_N: FERM N-termin 25.5 3.3E+02 0.0072 22.6 7.3 52 709-763 10-62 (80)
159 cd01787 GRB7_RA RA (RAS-associ 25.2 3E+02 0.0066 24.0 6.7 48 692-743 3-50 (85)
160 cd01771 Faf1_UBX Faf1 UBX doma 25.0 2.2E+02 0.0048 24.3 5.9 62 595-671 18-79 (80)
161 PLN02560 enoyl-CoA reductase 24.5 80 0.0017 34.5 3.9 32 595-626 17-49 (308)
162 KOG4146 Ubiquitin-like protein 24.4 1.3E+02 0.0028 26.5 4.2 55 715-776 35-97 (101)
163 PF14533 USP7_C2: Ubiquitin-sp 24.2 1.5E+02 0.0033 30.5 5.7 65 707-776 35-101 (213)
164 cd01815 BMSC_UbP_N Ubiquitin-l 23.9 66 0.0014 27.3 2.4 26 599-624 18-46 (75)
165 cd06408 PB1_NoxR The PB1 domai 23.4 3.3E+02 0.0071 23.8 6.6 33 592-625 12-44 (86)
166 smart00295 B41 Band 4.1 homolo 22.9 4.9E+02 0.011 25.8 9.3 78 693-776 5-83 (207)
167 PTZ00380 microtubule-associate 22.9 97 0.0021 28.9 3.5 29 711-740 46-74 (121)
168 PTZ00380 microtubule-associate 22.6 3.2E+02 0.0069 25.5 6.8 66 593-674 42-107 (121)
169 cd01801 Tsc13_N Ubiquitin-like 22.1 2.4E+02 0.0053 23.6 5.7 55 713-773 20-74 (77)
170 KOG4598 Putative ubiquitin-spe 21.8 35 0.00075 40.4 0.5 160 597-777 974-1154(1203)
171 KOG1871 Ubiquitin-specific pro 21.5 65 0.0014 35.8 2.4 35 196-230 178-212 (420)
172 cd00196 UBQ Ubiquitin-like pro 21.4 2.4E+02 0.0051 20.8 5.3 55 711-774 13-67 (69)
173 PF04921 XAP5: XAP5, circadian 20.6 3E+02 0.0065 28.8 6.9 30 584-615 105-134 (239)
174 KOG1769 Ubiquitin-like protein 20.6 2.4E+02 0.0053 25.2 5.3 35 592-626 31-65 (99)
175 PF08154 NLE: NLE (NUC135) dom 20.5 2.8E+02 0.006 22.6 5.4 50 693-743 3-57 (65)
176 PF04110 APG12: Ubiquitin-like 20.1 1.6E+02 0.0035 25.8 4.1 40 709-748 19-58 (87)
No 1
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-148 Score=1218.35 Aligned_cols=739 Identities=40% Similarity=0.700 Sum_probs=673.4
Q ss_pred cCCCCcEEEEEEcCccccCCCeeecCcEEEcceEEEEEEEECCCCCCcEEEEEEecCCCC---CCCCceEEEEEEEEEEe
Q 003426 48 EDPPTMKFTWTIENFSRLNTKKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADSGT---LPYGWSRYAQFSLAVVN 124 (821)
Q Consensus 48 ~~~~~~~~tw~I~n~S~l~~~~~~Sp~f~vgg~~W~I~~yP~G~~~~~lSvyL~~~~~~~---~~~~W~v~a~f~l~L~n 124 (821)
++.....++|+|++||.+. +++.||+|.+||+.|+|.+||+|++...+||||++...+. ....|.|||||+|.|.|
T Consensus 34 Ee~~~~sftW~vk~wsel~-~k~~Sp~F~vg~~twki~lfPqG~nq~~~sVyLe~~pqe~e~~~gk~~~ccaqFaf~Is~ 112 (1089)
T COG5077 34 EELLEMSFTWKVKRWSELA-KKVESPPFSVGGHTWKIILFPQGNNQCNVSVYLEYEPQELEETGGKYYDCCAQFAFDISN 112 (1089)
T ss_pred HHHhhcccceecCChhhhh-hhccCCcccccCeeEEEEEecccCCccccEEEEEeccchhhhhcCcchhhhhheeeecCC
Confidence 4455678999999999998 6899999999999999999999998766999999986531 12359999999999999
Q ss_pred cCCCceeeeeccceeecCCCCCceeccccCCCcccCCCCC---ccccccceeeeeeeeeec------cccccccCCCCcc
Q 003426 125 QIHSKYSIRKDTQHQFNARESDWGFTSFMPLGDLYDPSRG---YLVNDSVVVEAEVAVRKV------LDYWSYDSKKETG 195 (821)
Q Consensus 125 ~~~~~~~~~~~~~~~F~~~~~dwG~~~Fi~~~~L~~~~~g---fl~dD~l~I~~~V~v~~~------~~~~~~~sk~~~g 195 (821)
+..|+....++++|+|+...+||||++|+.+..|..|+.| |+.++++.|+|+|+|+++ |++.+|+||+.||
T Consensus 113 p~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdPTGVLWHsF~nYnSKkeTG 192 (1089)
T COG5077 113 PKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDPTGVLWHSFLNYNSKKETG 192 (1089)
T ss_pred CCCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCCccceeeccccccccccee
Confidence 9999888889999999999999999999999999887654 899999999999999984 4566999999999
Q ss_pred cccccCCCcccchhhHHHHhhccHhHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhHHHhhCCCCCCcc
Q 003426 196 YVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSF 275 (821)
Q Consensus 196 ~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~~~~~~~~ 275 (821)
||||+|+|+||||||+||+||.+..||+.+|.+|+ +++.+.+++++||||+|++||.+..+++|++|+++|||.+.+.+
T Consensus 193 YVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipT-d~p~grdSValaLQr~Fynlq~~~~PvdTteltrsfgWds~dsf 271 (1089)
T COG5077 193 YVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPT-DHPRGRDSVALALQRLFYNLQTGEEPVDTTELTRSFGWDSDDSF 271 (1089)
T ss_pred eeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCC-CCCCccchHHHHHHHHHHHHhccCCCcchHHhhhhcCcccchHH
Confidence 99999999999999999999999999999999999 66677789999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHHHHhcCCcccccccccceeEEeeEEEEeccCceeeeeeeeeeEEEeeCCCCCHHHHHHHhhhhe
Q 003426 276 MQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVE 355 (821)
Q Consensus 276 ~Q~Da~Ef~~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l~l~v~~~~~l~esL~~~~~~E 355 (821)
+|||+|||.++|+|+||..|+++..++.++.+|.|+|.++++|.++.++|.|.|.||+|+|++++.++|++||++|++.|
T Consensus 272 ~QHDiqEfnrVl~DnLEksmrgt~VEnaln~ifVgkmksyikCvnvnyEsarvedfwdiqlNvK~~knLqeSfr~yIqvE 351 (1089)
T COG5077 272 MQHDIQEFNRVLQDNLEKSMRGTVVENALNGIFVGKMKSYIKCVNVNYESARVEDFWDIQLNVKGMKNLQESFRRYIQVE 351 (1089)
T ss_pred HHHhHHHHHHHHHHHHHHhhcCChhhhHHhHHHHHHhhceeeEEEechhhhhHHHHHHHHhcccchhhHHHHHHHhhhhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccccCCeeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCccccCCccCCCCCCCCcCCCCC-
Q 003426 356 RLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDADRSVR- 434 (821)
Q Consensus 356 ~l~g~n~y~c~~c~~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~~~~~~- 434 (821)
+|+|+|+|.|+++|.|+|.|++.|.+|||||++|||||+||++++.++||||+++||.+||| .+|+++++++++.
T Consensus 352 ~l~GdN~Y~ae~~GlqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl----~pfld~da~ksen~ 427 (1089)
T COG5077 352 TLDGDNRYNAEKHGLQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDL----LPFLDRDADKSENS 427 (1089)
T ss_pred eccCCcccccccccchhhccceeeccCchHHHHHHHHhccccccCceeeecccccCcchhcc----ccccCchhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999887766
Q ss_pred -ccEEEeEEEEEeecCCCccEEEEEEeCCCCCEEEeeCCceeEcchHhHHHhhcCCCCCCCCCCCCCCCCCcccccCccE
Q 003426 435 -NLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNA 513 (821)
Q Consensus 435 -~~Y~L~gVIvH~G~~~~GHY~ayir~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~A 513 (821)
+.|.|+||+||+|+.+.|||||++|+..+|+||+|||++|++++.++|+++||||+.... .++. ......|..+|
T Consensus 428 d~vY~LygVlVHsGDl~~GHyYallKpe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~--~k~r--~~~~~kRfmsA 503 (1089)
T COG5077 428 DAVYVLYGVLVHSGDLHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYK--DKIR--DHSGIKRFMSA 503 (1089)
T ss_pred CcEEEEEEEEEeccccCCceEEEEeccccCCCceeecceehhhHHHHHHHHHhcCCCCCCc--cccc--CCchhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999986421 1111 11346778899
Q ss_pred EEEEEEeecccccccccCCccchhHHHHHHHHHHHHHHHHHHHHHHhhccceeeEEecChhhHhhhcccccccccCCCc-
Q 003426 514 YMLVYIRESDKDKIICNVDEKDIAEHLRIRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDK- 592 (821)
Q Consensus 514 YmL~Y~R~~~~~~~~~~~~~~~ip~~l~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 592 (821)
|||+|.|++..++++.|+...+||+|+++++.+|..+.|.+.+|+.|+|+|..++++|.+.|.+|.| ||..|+..
T Consensus 504 YmLvYlRks~~ddLlnPV~a~diP~hv~e~l~eei~~~e~r~kei~e~hlYr~vrl~tid~f~~yhg----FDy~Dfs~~ 579 (1089)
T COG5077 504 YMLVYLRKSMLDDLLNPVAAVDIPPHVEEVLSEEIDKTEVRCKEIDEIHLYRGVRLYTIDSFIHYHG----FDYPDFSSE 579 (1089)
T ss_pred heeeeehHhHHHhhhCchhhhhCCHHHHHhhCHHHHHHHHHHHHHHHhhhheeeEEeecchhhhccC----cCchhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 88887763
Q ss_pred -----ceEEEeeccccHHHHHHHHHHHhCCCCCc-eEEEEEeecCCCCCCCCCCCCCcchhchHHHHHhhhcccccccee
Q 003426 593 -----VRSFRVQKQTSFMAFKEEIAKEFGIPIQL-QRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELR 666 (821)
Q Consensus 593 -----~~~~~v~k~~~~~~~~~~v~~~~~~~~~~-~r~w~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (821)
...+++++.+++.+|...||+.+++|-+. +|+|.|.+|+|+|.|.++|+. ....++.++.....+. ...++
T Consensus 580 ~~d~~l~qf~iKr~akisdl~~~iae~ln~pqs~~~r~w~m~krhn~tvrvd~P~n--~vnit~~e~~~m~tr~-ge~l~ 656 (1089)
T COG5077 580 LNDSGLAQFVIKRGAKISDLRNNIAEHLNTPQSLYLREWTMIKRHNKTVRVDRPCN--RVNITTRELVGMNTRT-GEELR 656 (1089)
T ss_pred cccccceeEEeecCCCHHHHHHHHHHHcCCCceeeeEEEEEEeccccceeecCcch--hhhhHHHHHhhccchh-HHHHH
Confidence 67899999999999999999999999998 999999999999999999985 4556777776644332 23577
Q ss_pred EEEEeecC-CCCCC-CCCCCCCCCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeec
Q 003426 667 LFLEVEFG-PDLHP-IAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIK 744 (821)
Q Consensus 667 ~~~e~~~~-~~~~~-~~~~~~~~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik 744 (821)
+|||.... .++.. ..........++||+||||+.+|.+.|+|++.|.+.++|+++.|.|++ .||.++||.+||||
T Consensus 657 ~yle~~iEhnqL~s~~~~~lt~d~~~~ifvkyfd~~tq~i~gfg~lhvnk~~~issisp~ied--~~ssn~plt~yeei- 733 (1089)
T COG5077 657 SYLERIIEHNQLDSQRKVALTKDGVINIFVKYFDYTTQPISGFGGLHVNKFLKISSISPWIED--SISSNLPLTLYEEI- 733 (1089)
T ss_pred HHHHhhhhhhhhhhhhheeecCCcceEEEEEeeccccccccCccchhhhhhcccccccHHHhh--cccCCCCcchhhhh-
Confidence 88887654 22211 111223445699999999999999999999999999999999999999 89999999999999
Q ss_pred cCccccccccCccCcccccccCCCCEEEEEeCCCCCCccCCCCCCHHHHHHHhhcceEEEEEeC
Q 003426 745 FEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSPPLESEQECRYPDVPSFLEYVHNRQVQNMWKF 808 (821)
Q Consensus 745 ~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~~~~~~~~~~~~~~~v~~y~~~l~~r~~~~~~~~ 808 (821)
+|+|+ ..|.++.||.++||+.||||||+.+...+......|.++..+|+||++||.|.|.++
T Consensus 734 -kpgmv-d~i~~n~t~~~sei~tgDIi~Fe~p~a~e~Dts~~ydsa~klydfl~~rVlv~frrf 795 (1089)
T COG5077 734 -KPGMV-DTIGDNITFIGSEIGTGDIICFEVPGAVEFDTSSAYDSALKLYDFLQGRVLVAFRRF 795 (1089)
T ss_pred -ccCcc-ccccCCcceeecccCcCcEEEEeccCcccccccccchhhhHHHHhhcCcEEEEEEee
Confidence 79999 999999999999999999999997665544455679999999999999999999976
No 2
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-92 Score=869.08 Aligned_cols=735 Identities=41% Similarity=0.618 Sum_probs=646.2
Q ss_pred EEEEEEcCccccCCCeeecCcEEEcceEEEEEEEECCCCCCcEEEEEEecCCCCCCCCceEEEEEEEEEEecCCCceeee
Q 003426 54 KFTWTIENFSRLNTKKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADSGTLPYGWSRYAQFSLAVVNQIHSKYSIR 133 (821)
Q Consensus 54 ~~tw~I~n~S~l~~~~~~Sp~f~vgg~~W~I~~yP~G~~~~~lSvyL~~~~~~~~~~~W~v~a~f~l~L~n~~~~~~~~~ 133 (821)
..+|++.++..+.. +..||.|-.|+.+|++++.|+|+....+++|++|...... ..|+|++++.+.+.|..++.....
T Consensus 28 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~~~~~~~~~~ 105 (1093)
T KOG1863|consen 28 STTIDGIDDKSLLY-RALSSNFGAGATKWKILIAPKVNSLQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKNTIDNLPDPE 105 (1093)
T ss_pred cccccCcCcchhhh-HhcCccccccccceeeeeccccCcccceeEEeeeccCCCC-cceEecchhhhccccCCCCchhhh
Confidence 34587888877774 8899999999999999999999988899999999987765 569999999999999666666777
Q ss_pred eccceeecCCCCCceeccccCCCcccCCCCCccccccceeeeeeeeeecccc-ccccCCCCccc-ccccCCCcccchhhH
Q 003426 134 KDTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKVLDY-WSYDSKKETGY-VGLKNQGATCYMNSL 211 (821)
Q Consensus 134 ~~~~~~F~~~~~dwG~~~Fi~~~~L~~~~~gfl~dD~l~I~~~V~v~~~~~~-~~~~sk~~~g~-~GL~N~GnTCYlNS~ 211 (821)
+.++|+|.....||||.+|+.++++..+..||+.+|++.+++.|++...++. +.|++|+.+|+ +||+|+||||||||+
T Consensus 106 ~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~d~k~~tg~~vGL~N~GaTCY~Nsl 185 (1093)
T KOG1863|consen 106 KAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSLMNPYDSKRLTGFPVGLKNLGATCYVNSL 185 (1093)
T ss_pred hhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcccchhhhhhcCCCCccccCCCceeeehHH
Confidence 8899999999999999999999999999999999999999999999987776 78999999999 999999999999999
Q ss_pred HHHhhccHhHHHHHhcCCC-CCCCCCCCCHHHHHHHHHHHHhcCCC-cccchhHHHhhCCCCCCccccCcHHHHHHHHHH
Q 003426 212 LQTLYHIPYFRKAVYHMPT-TENDLPSGSIPLALQSLFYKLQYNDT-SVATKELTKSFGWDTYDSFMQHDVQELNRVLCE 289 (821)
Q Consensus 212 LQ~L~~~p~fr~~l~~~~~-~~~~~~~~~~~~~Lq~Lf~~l~~s~~-~v~~~~l~~~~~~~~~~~~~Q~Da~Ef~~~Lld 289 (821)
||+||+++.||+.||+++. ..+..+..+++.+||+||+.||.++. +|+|.+++++|||.+...++|||+|||+++|+|
T Consensus 186 lQ~lf~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~~~~~~~~~~~~~~QqDvqEf~~~l~d 265 (1093)
T KOG1863|consen 186 LQVLFLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQMSKRKYVDTSELTKSLGWDSNDSFEQQDVQEFLTKLLD 265 (1093)
T ss_pred HHHHHccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhhcCCCCcCchhhhhhhhcccccHHhhhhHHHHHHHHHH
Confidence 9999999999999999993 25667778899999999999999987 999999999999999999999999999999999
Q ss_pred HHHHHhcCCcccccccccceeEEeeEEEEeccCceeeeeeeeeeEEEeeCCCCCHHHHHHHhhhhecccCCCccccccCC
Q 003426 290 KLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEEHG 369 (821)
Q Consensus 290 ~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l~l~v~~~~~l~esL~~~~~~E~l~g~n~y~c~~c~ 369 (821)
.||+.++++..++.+.++|.|++.+++.|..|++++.+.|.|+++++++++.+++.++|..|+..|.++|+|+|.++.++
T Consensus 266 ~LE~~~~~~~~~~~l~~lf~g~~~~~i~c~~~~~~s~r~e~f~d~ql~~~g~~nl~~sf~~y~~~E~l~gdn~~~~~~~~ 345 (1093)
T KOG1863|consen 266 WLEDSMIDAKVENTLQDLFTGKMKSVIKCIDVDFESSRSESFLDLQLNGKGVKNLEDSLHLYFEAEILLGDNKYDAECHG 345 (1093)
T ss_pred HHHhhccchhhhhhhhhhhcCCcceEEEEEeeeeeccccccccCccccccchhhHHHHHHHhhhHHHhcCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997666668
Q ss_pred eeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCccccCCccCCCCCCCCcCCCCC-ccEEEeEEEEEeec
Q 003426 370 LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDADRSVR-NLYTLHSVLVHSGG 448 (821)
Q Consensus 370 ~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~~~~~~-~~Y~L~gVIvH~G~ 448 (821)
.++|.+++.|.+|||||+|||+||.||..++...|++++++||..|+|++|.+. ..+..+.. +.|+|+||++|.|+
T Consensus 346 ~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~i~~d~~~~~---~~~~~~~~~~~y~l~~v~vh~g~ 422 (1093)
T KOG1863|consen 346 LQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFPLIIDMDRYLSR---FKAEESERSAVYSLHAVLVHSGD 422 (1093)
T ss_pred hhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCccccccchhccc---cchhhhhccceeccchhhccccc
Confidence 999999999999999999999999999999999999999999999999555443 23333334 49999999999889
Q ss_pred CCCccEEEEEEeCCCCCEEEeeCCceeEcchHhHHHhhcCCCCCCCCCCCCCCCCCcccccCccEEEEEEEeeccccccc
Q 003426 449 VHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKII 528 (821)
Q Consensus 449 ~~~GHY~ayir~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~~~~~~~ 528 (821)
.++|||++|+++...++|++|||..|+.++..+|++.+|||.+..... .....+||||+|.|.+..+.++
T Consensus 423 ~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~----------~~~~~~~~~lv~~~~s~~~~~~ 492 (1093)
T KOG1863|consen 423 AHSGHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNYGTEEIELSS----------TADFKNAYMLVYIRDSCESKIL 492 (1093)
T ss_pred ccCccceeeecchhhccceeccCceeeeccHHHHHHhhCCCcchhhhc----------ccccCCcceEEEEecCcHHhhh
Confidence 999999999998889999999999999999999999999998753211 1122459999999999999999
Q ss_pred ccCCccchhHHHHHHHHHHHHHHHHHHHHHHhhccceeeEEecChhhHhhhcccccccccCC----CcceEEEeeccccH
Q 003426 529 CNVDEKDIAEHLRIRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDH----DKVRSFRVQKQTSF 604 (821)
Q Consensus 529 ~~~~~~~ip~~l~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~v~k~~~~ 604 (821)
++++...+|.|+.+.+..++.+.+.++|+.+++++|+.++..+++.+..+.+ |++.+. .+..++|+.+...+
T Consensus 493 ~~v~e~~i~~~l~~~~~~e~~~~~~k~k~~~~~~l~~~i~~~~~d~~~~~~~----~~~~~~~~~~~~~~~~r~~~~~~~ 568 (1093)
T KOG1863|consen 493 KDISESSIPYHLSETLQKEKYKTEEKDKELEEARLSAVIRALSDDQLIKQHG----FDVEDELYEPEQYRTLRAAKIEEL 568 (1093)
T ss_pred cccchhhccHHHHHHhhhhhhhhhhhhhhhHHhhhhhhhhccCccchhhhcc----chHhhhhcccccchHHHHHhhhhH
Confidence 9999999999999999999999999999999999999999999999999998 666655 46678999999999
Q ss_pred HHHHHHHHHHhCCCCC-ceEEEEEeecCCCCCCCCCCCCCcchhchHHHHHhhhccccccceeEEEEee----cCCCCCC
Q 003426 605 MAFKEEIAKEFGIPIQ-LQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVE----FGPDLHP 679 (821)
Q Consensus 605 ~~~~~~v~~~~~~~~~-~~r~w~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~----~~~~~~~ 679 (821)
.+|...++..+|+++. ..++|.+..|.|.+.++..+........++.+..+.+. +..+..|++.. .+++...
T Consensus 569 ~eli~~~~~~~~~~~~~~~~~w~~~~r~~~~~~~~~~~n~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~ 645 (1093)
T KOG1863|consen 569 SELITRLLGEFELPPSVQPRLWPLGYRNNLTVLPQYLFNIAPLRSYILDITEKVL---NDLWHEYLELAVEEIGGNEVRR 645 (1093)
T ss_pred HHHHHHHHhhccCCccccchhhhhhccccceEeeecccccchhhhhhhhhhhhhc---cchHHHHHHHHhhhcCcccccc
Confidence 9999999999999998 89999999999999998877655444444444433211 11233344332 2222111
Q ss_pred CCCCCCCCCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCcc---ccccccCc
Q 003426 680 IAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPC---VMCEHLDK 756 (821)
Q Consensus 680 ~~~~~~~~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~---~i~e~i~~ 756 (821)
.++.....++++|+|+||+..+.+.++|+...+...+..++.+.++++.|+++++.+.+|+|+ +++ +| +.+..
T Consensus 646 -~~~~~~~~~~~lf~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~d~~~~~~~e~--~~~~~~~i-d~~~~ 721 (1093)
T KOG1863|consen 646 -LPSFQFTRDLLLFLKMYDDRKRSVTPSGELAYLALTPLRLLQVLLNELIGVVDDTSTREYSEL--KEEKDERI-DKIAE 721 (1093)
T ss_pred -cccccchHHHHHHHHHhccccccccchhhccccccCchhhhhhhhhhhcccCCccchHHHHHh--cchhhhcc-hhhhh
Confidence 233344556799999999999999999999999999999999999999999999999999999 465 44 77888
Q ss_pred cCcccccccCCCCEEEEEeCCCCCCccCCCCCCHHHHHHHhhcceEEEEEeCccCCCCC
Q 003426 757 RTSFRLSQIEDGDIICFQKSPPLESEQECRYPDVPSFLEYVHNRQVQNMWKFSINSNHN 815 (821)
Q Consensus 757 ~~t~~~~el~~GDIi~fQ~~~~~~~~~~~~~~~v~~y~~~l~~r~~~~~~~~~~~~~~~ 815 (821)
..+|..+++++|||+||+...+. ......++++.+|++++.+|..+.|.+.....+++
T Consensus 722 ~~~~~~~~~~d~~~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1093)
T KOG1863|consen 722 EKSFDLSELEDGDISVVEEEAAS-KDSESNRADVSEFLENVENRTLQRFRKVSSEIEEN 779 (1093)
T ss_pred hhhhhhhhhhcCCeeeecccccC-CcccccccchHHHHHHHHHHHHHHHhccccccccc
Confidence 99999999999999999987654 24556799999999999999999999987776664
No 3
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.2e-59 Score=512.42 Aligned_cols=320 Identities=54% Similarity=0.887 Sum_probs=278.4
Q ss_pred ccccccCCCcccchhhHHHHhhccHhHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcc-cchhH--HHhhCCCC
Q 003426 195 GYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSV-ATKEL--TKSFGWDT 271 (821)
Q Consensus 195 g~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v-~~~~l--~~~~~~~~ 271 (821)
|++||.|+||||||||+||+|+++|+||+++++++......+..++.++|+.||..|+.+.... .+..+ ...++|..
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRSFGWDS 80 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcccCcccccHHHHHHHHHHHHHhCCccccCcchhheeccCCCCC
Confidence 7999999999999999999999999999999987543444556789999999999999876433 33222 46778888
Q ss_pred CCccccCcHHHHHHHHHHHHHHHhcCCcccccccccceeEEeeEEEEeccCceeeeeeeeeeEEEeeCCCCCHHHHHHHh
Q 003426 272 YDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKY 351 (821)
Q Consensus 272 ~~~~~Q~Da~Ef~~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l~l~v~~~~~l~esL~~~ 351 (821)
+..+.||||+||+..|++.|++++++....+.+.++|+|++...++|..|++.+.+.++|++|+|++++..+++++|+.|
T Consensus 81 ~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~~l~~~l~~~ 160 (334)
T cd02659 81 LNTFEQHDVQEFFRVLFDKLEEKLKGTGQEGLIKNLFGGKLVNYIICKECPHESEREEYFLDLQVAVKGKKNLEESLDAY 160 (334)
T ss_pred CCcccchhHHHHHHHHHHHHHHHhccCcccchhhhhCceEEEeEEEecCCCceecccccceEEEEEcCCCCCHHHHHHHh
Confidence 89999999999999999999999988777789999999999999999999999999999999999999999999999999
Q ss_pred hhhecccCCCccccccCCe-eeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCccccCCccCCCCCCCCc-
Q 003426 352 VEVERLEGDNKYHAEEHGL-QDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDA- 429 (821)
Q Consensus 352 ~~~E~l~g~n~y~c~~c~~-~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~- 429 (821)
+.+|.++|.++|.|++|++ +.+.++..|.++|++|+|||+||.|+..++..+|+++.|+||..||| .+|+....
T Consensus 161 ~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl----~~~~~~~~~ 236 (334)
T cd02659 161 VQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDM----EPYTEKGLA 236 (334)
T ss_pred cCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceecC----ccccccccc
Confidence 9999999999999999985 48999999999999999999999999888889999999999999999 56654432
Q ss_pred --------CCCCCccEEEeEEEEEeecCCCccEEEEEEeCCCCCEEEeeCCceeEcchHhHHHhhcCCCCCCCCCCCCCC
Q 003426 430 --------DRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFN 501 (821)
Q Consensus 430 --------~~~~~~~Y~L~gVIvH~G~~~~GHY~ayir~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~ 501 (821)
.......|+|+|||+|.|+.++|||+||+|...+++||+|||+.|++++.++|++.+|||.+.... +.
T Consensus 237 ~~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g~~~~~~~----~~ 312 (334)
T cd02659 237 KKEGDSEKKDSESYIYELHGVLVHSGDAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQKT----YD 312 (334)
T ss_pred cccccccccCCCCeeEEEEEEEEecCCCCCCCeEEEEECCCCCceEEEeCcccEECCHHHHHHHcCCCcccccc----cc
Confidence 234567899999999999999999999999976899999999999999999999999999854210 00
Q ss_pred CCCcccccCccEEEEEEEeec
Q 003426 502 NTPFKFTKYSNAYMLVYIRES 522 (821)
Q Consensus 502 ~~~~~~~~~~~AYmL~Y~R~~ 522 (821)
.......+..+||||||+|++
T Consensus 313 ~~~~~~~~~~~ay~l~Y~~~~ 333 (334)
T cd02659 313 SGPRAFKRTTNAYMLFYERKS 333 (334)
T ss_pred ccccccccccceEEEEEEEeC
Confidence 001223445789999999976
No 4
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.2e-58 Score=501.27 Aligned_cols=307 Identities=34% Similarity=0.551 Sum_probs=262.0
Q ss_pred cccCCCcccchhhHHHHhhccHhHHHHHhcCCCCCCC----------CCCCCHHHHHHHHHHHHhcCC-CcccchhHHHh
Q 003426 198 GLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTEND----------LPSGSIPLALQSLFYKLQYND-TSVATKELTKS 266 (821)
Q Consensus 198 GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~~~----------~~~~~~~~~Lq~Lf~~l~~s~-~~v~~~~l~~~ 266 (821)
||.|+||||||||+||+|+++|+||++++..+..+.. ....+++.+|++||..|+.+. .+++|..|.++
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 8999999999999999999999999999886543210 123578999999999999865 67899999999
Q ss_pred hCCCCCCccccCcHHHHHHHHHHHHHHHhcC---CcccccccccceeEEeeEEEEeccCceeeeeeeeeeEEEeeCCCCC
Q 003426 267 FGWDTYDSFMQHDVQELNRVLCEKLEDKMKG---TVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRD 343 (821)
Q Consensus 267 ~~~~~~~~~~Q~Da~Ef~~~Lld~Le~~~~~---~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l~l~v~~~~~ 343 (821)
+++ ..++||||+||+..||+.|+++++. ....+.+.++|.|++.+.++|..|++.+.+.|+|++|+|++++..+
T Consensus 81 l~~---~~~~QqDa~EFl~~lLd~L~~~l~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~s 157 (324)
T cd02668 81 LGL---DTGQQQDAQEFSKLFLSLLEAKLSKSKNPDLKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYELELQLKGHKT 157 (324)
T ss_pred hCC---CCccccCHHHHHHHHHHHHHHHHhhccCCcccchhhhhcceEEEEEEEeCCCCCccccccccEEEEEEecccCC
Confidence 975 5678999999999999999999874 3345788999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhecccCCCccccccCC-eeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCccccCCccCC
Q 003426 344 VYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENG 422 (821)
Q Consensus 344 l~esL~~~~~~E~l~g~n~y~c~~c~-~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~ 422 (821)
|+++|+.|+.+|.++|+|+|.|++|+ +++|.++..|.++|++|+|||+||.||..++...|+++.|+||..||| +
T Consensus 158 l~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~~Ldl----~ 233 (324)
T cd02668 158 LEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILDM----G 233 (324)
T ss_pred HHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECCCeEec----h
Confidence 99999999999999999999999997 578999999999999999999999999888889999999999999999 7
Q ss_pred CCCCCCcCCCCCccEEEeEEEEEee-cCCCccEEEEEEeCCCCCEEEeeCCceeEcchHhHHHhhcCCCC-CCCCCCCCC
Q 003426 423 KYLSPDADRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEE-ELPPTNPGF 500 (821)
Q Consensus 423 ~~l~~~~~~~~~~~Y~L~gVIvH~G-~~~~GHY~ayir~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~-~~~~~~~~~ 500 (821)
+|+.+.. ..+..|+|+|||+|.| ++++|||+||+|+..+++||+|||+.|++++++.+.+. +|+.. ......
T Consensus 234 ~~~~~~~--~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~-~~~~~~~~~~~~--- 307 (324)
T cd02668 234 EYLAESD--EGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLG-NSEDPAKPRKSE--- 307 (324)
T ss_pred hhccccc--CCCcEEEEEEEEEEcCCCCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhcc-cccccccccccc---
Confidence 7775432 3467899999999999 58999999999997678999999999999999988653 44221 100000
Q ss_pred CCCCcccccCccEEEEEEE
Q 003426 501 NNTPFKFTKYSNAYMLVYI 519 (821)
Q Consensus 501 ~~~~~~~~~~~~AYmL~Y~ 519 (821)
.......+.+||||||+
T Consensus 308 --~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 308 --IKKGTHSSRTAYMLVYK 324 (324)
T ss_pred --cCCCccccCceEEEEeC
Confidence 00112235799999995
No 5
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-58 Score=499.90 Aligned_cols=480 Identities=28% Similarity=0.430 Sum_probs=347.8
Q ss_pred CCCcccccccCCCcccchhhHHHHhhccHhHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhHHHhhCCC
Q 003426 191 KKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWD 270 (821)
Q Consensus 191 k~~~g~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~~~ 270 (821)
....|||||.|+..|||+|+.+|+|+..|.||+.+|..+ +.++.+++|+++|||.
T Consensus 82 ~~~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~-------------------------~~~~et~dlt~sfgw~ 136 (1203)
T KOG4598|consen 82 ENGHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSE-------------------------NDSLETKDLTQSFGWT 136 (1203)
T ss_pred cCCcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCC-------------------------cccccchhhHhhcCCC
Confidence 456789999999999999999999999999999998422 2346789999999999
Q ss_pred CCCccccCcHHHHHHHHHHHHHHHhcCCcccccccccceeEEeeEEEEeccCceeeeeeeeeeEEEeeCCC------CCH
Q 003426 271 TYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGC------RDV 344 (821)
Q Consensus 271 ~~~~~~Q~Da~Ef~~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l~l~v~~~------~~l 344 (821)
+.+.++|||+||+.++++|.||-+.|++..++.|.+|++|+|..++.|.+|+.++.+.+.|++|+|+|+.. +++
T Consensus 137 s~ea~~qhdiqelcr~mfdalehk~k~t~~~~li~~ly~g~m~d~v~cl~c~~e~~~~d~fld~pl~v~pfg~~~ay~si 216 (1203)
T KOG4598|consen 137 SNEAYDQHDVQELCRLMFDALEHKWKGTEHEKLIQDLYRGTMEDFVACLKCGRESVKTDYFLDLPLAVKPFGAIHAYKSV 216 (1203)
T ss_pred cchhhhhhhHHHHHHHHHHHHHhhhcCchHHHHHHHHhcchHHHHHHHHHcCccccccceeecccccccCCcchhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999853 479
Q ss_pred HHHHHHhhhhecccCCCccccccCC-eeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCccccCCccCCC
Q 003426 345 YASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGK 423 (821)
Q Consensus 345 ~esL~~~~~~E~l~g~n~y~c~~c~-~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~ 423 (821)
+++|..|++||.|+|.|+|-|++|+ +++|.|+..|++||-+|.||||||.||++++.++|+|+++.||..|||+-|..+
T Consensus 217 eeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp~~l~ln~~in~ 296 (1203)
T KOG4598|consen 217 EEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFPDVLDLNDYVNK 296 (1203)
T ss_pred HHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCcccccHHHhhhh
Confidence 9999999999999999999999995 799999999999999999999999999999999999999999999999754200
Q ss_pred ---------C----------------C-CCC----------------------------------cCCCCCccEEEeEEE
Q 003426 424 ---------Y----------------L-SPD----------------------------------ADRSVRNLYTLHSVL 443 (821)
Q Consensus 424 ---------~----------------l-~~~----------------------------------~~~~~~~~Y~L~gVI 443 (821)
+ + +++ ...+++..|+|++|.
T Consensus 297 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf~im 376 (1203)
T KOG4598|consen 297 EKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELFSVM 376 (1203)
T ss_pred ccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccCCcCchhhhhhHhhcCCccHHHhhhhh
Confidence 0 0 000 013467899999999
Q ss_pred EEeecCCCccEEEEEEeCCCCCEEEeeCCceeEcchHhHHHhhcCCCCCCCCCCCCCCCCCcccccCccEEEEEEEeecc
Q 003426 444 VHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRESD 523 (821)
Q Consensus 444 vH~G~~~~GHY~ayir~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~~ 523 (821)
+|+|++.+|||+||||+..+++||.|||.+|+.++..++ +..|||... ++ ....++||||+|+|.+.
T Consensus 377 ihsg~a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i-~~sfgg~~~------~~------~~s~tnaymlmyr~id~ 443 (1203)
T KOG4598|consen 377 VHSGNAAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEI-EKSFGGHPS------GW------NQSNTNAYMLMYRRIDP 443 (1203)
T ss_pred eecCCCCCceeeeeecccCcCceEEecCccccccCHHHH-HHhhCCCCC------Cc------cccCcchhhhhhhhcCc
Confidence 999999999999999999899999999999999998886 778999753 21 23458999999999887
Q ss_pred cccccccCCccchhHHHHHHHHHHHHHHHHHHHHHHhhccceeeEEecChhhHhhhcccccccccCCC--cceEEEeecc
Q 003426 524 KDKIICNVDEKDIAEHLRIRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHD--KVRSFRVQKQ 601 (821)
Q Consensus 524 ~~~~~~~~~~~~ip~~l~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~v~k~ 601 (821)
..+-+. +...+.|+|++..+.+-..+++.+..+ .-.|+ ..+.+..+..+.- ..+|-+-+-. ++....|.++
T Consensus 444 krn~~~-~~~~~~p~hik~~~~k~~~~e~~~~~~-~~r~~-s~~~~~~~~~y~~----~~~~~~p~~k~~~~t~~~is~~ 516 (1203)
T KOG4598|consen 444 KRNARF-ILSNQLPQHIKDSQEKWKRLEREAEDE-RLRKL-SLIQVYVTINYPF----PSVVTLPDKKQLDLTKTEISRE 516 (1203)
T ss_pred ccccce-eecccchHHHHHHHHHHHHHHHHHHHh-hhcee-eEEEEEeeccCCC----ceEEECCchhhccceeeeeecc
Confidence 655432 345689999998776544443322222 12222 2223332222110 0111111111 2334556667
Q ss_pred ccHHHHH----HHHHHHhCCCCCceEEEEEeecCCCCCCCCCCCCCcchhchHHHHHhhhccccccceeEEEEeecCCCC
Q 003426 602 TSFMAFK----EEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEFGPDL 677 (821)
Q Consensus 602 ~~~~~~~----~~v~~~~~~~~~~~r~w~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 677 (821)
+++.-+. +.+..+-..|..++|+..+.... +++.-+ + .+..++.+.+++.. .+-.+.+.||+.-...+
T Consensus 517 ~~i~~v~~~a~e~~n~~~~~p~s~~~~~~~~~~~-~s~~~~--~-~s~~d~~~~~~~~~----~~y~~~f~l~~r~~~~~ 588 (1203)
T KOG4598|consen 517 MPIKNVFNHAFEFFNERANLPFTKNSARLIYVEH-GSLMMD--F-KSKADMNVNHGEPG----SMYGVHFILDVRIASSF 588 (1203)
T ss_pred ccHHHHHHHHHHHhhhhhcCCcccceeEEEeecc-cHHHHh--h-hhccCcccccCCcc----cccceeEEEEEeecccc
Confidence 7766554 44444455677777765543221 111110 1 11122233333211 11236778887643322
Q ss_pred CCCCCCCCCCCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHc
Q 003426 678 HPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMA 729 (821)
Q Consensus 678 ~~~~~~~~~~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~ 729 (821)
.|...++.|.+++---|..+....+---+|+....+ ++...++.+.
T Consensus 589 ----f~v~~~n~it~~v~~vd~~~~~~~~~~~v~~~a~e~--~~~~vl~~~i 634 (1203)
T KOG4598|consen 589 ----FPVDIKNKITIKVQRVDIGKKTTANELIVVVDANEK--MIKVVLNARV 634 (1203)
T ss_pred ----ccccCCCCcEEEEEEEeccccccCCceEEEEccchH--HHHHHHhhhh
Confidence 122344567777777777777666555555555544 3334455443
No 6
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-56 Score=492.46 Aligned_cols=286 Identities=31% Similarity=0.446 Sum_probs=245.8
Q ss_pred cccCCCcccchhhHHHHhhccHhHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhcCC-Ccccchh-HHHhhCCCCCCcc
Q 003426 198 GLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYND-TSVATKE-LTKSFGWDTYDSF 275 (821)
Q Consensus 198 GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~-~~v~~~~-l~~~~~~~~~~~~ 275 (821)
||.|+||||||||+||+|+++|+||+++++.+... .....++..+|+.+|..|..+. .++.+.. +..+.....+..+
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~-~~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~~~~f~~~ 79 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPR-LGDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASRPPWFTPG 79 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccc-cCCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhcccccCCC
Confidence 89999999999999999999999999999876532 2234568899999999998754 5566665 6666555667888
Q ss_pred ccCcHHHHHHHHHHHHHHHhcCCcccccccccceeEEeeEEEEeccCceeeeeeeeeeEEEeeCCCCCHHHHHHHhhhhe
Q 003426 276 MQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVE 355 (821)
Q Consensus 276 ~Q~Da~Ef~~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l~l~v~~~~~l~esL~~~~~~E 355 (821)
+|||||||+..||+.|+ +.|.++|+|++.+.++|.+|++.+.+.|+|.+|+|+|+ +|+++|+.|+.+|
T Consensus 80 ~QqDa~EFl~~lLd~l~---------~~i~~~F~G~~~~~i~C~~C~~~s~~~e~f~~l~L~i~---sl~~~l~~~~~~E 147 (327)
T cd02664 80 SQQDCSEYLRYLLDRLH---------TLIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSFP---SVQDLLNYFLSPE 147 (327)
T ss_pred CcCCHHHHHHHHHHHHH---------HHHHhhCcEEeEeEEEcCCCCCEecccccceeeecCCC---CHHHHHHHhcCee
Confidence 99999999999999998 36889999999999999999999999999999999998 8999999999999
Q ss_pred cccCCCccccccCC-eeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCccccCCccCCCCCCC-------
Q 003426 356 RLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSP------- 427 (821)
Q Consensus 356 ~l~g~n~y~c~~c~-~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~------- 427 (821)
.++|+|+|.|++|+ +++|.++..|.++|++|+|||+||.||..++...|+++.|.||..||| ..+...
T Consensus 148 ~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl----~~~~~~~~~~~~~ 223 (327)
T cd02664 148 KLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSL----PVRVESKSSESPL 223 (327)
T ss_pred EccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEec----Ccccccccccccc
Confidence 99999999999996 578999999999999999999999999988889999999999999999 444321
Q ss_pred ----------CcCCCCCccEEEeEEEEEee-cCCCccEEEEEEeCC--------------------CCCEEEeeCCceeE
Q 003426 428 ----------DADRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTL--------------------SDQWYKFDDERVTK 476 (821)
Q Consensus 428 ----------~~~~~~~~~Y~L~gVIvH~G-~~~~GHY~ayir~~~--------------------~~~W~~fnD~~V~~ 476 (821)
.........|+|+|||+|.| ++++|||+||+|... +++||+|||+.|++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~ 303 (327)
T cd02664 224 EKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVTF 303 (327)
T ss_pred ccccccccccccccCCCceEEEEEEEEEccCCCCCcceEEEEecCCccccccccccccccccccCCCCCEEEEeCCceEE
Confidence 11112467899999999999 589999999999853 37999999999999
Q ss_pred cchHhHHHhhcCCCCCCCCCCCCCCCCCcccccCccEEEEEEE
Q 003426 477 EDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYI 519 (821)
Q Consensus 477 v~~~~v~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~ 519 (821)
++.++|..-. |+. ...+||||||+
T Consensus 304 ~~~~~v~~~~-~~~------------------~~~~aYlLfY~ 327 (327)
T cd02664 304 SSFESVQNVT-SRF------------------PKDTPYILFYE 327 (327)
T ss_pred CCHHHHHHhh-CCC------------------CCCCEEEEEeC
Confidence 9999997621 221 12699999994
No 7
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.2e-56 Score=483.89 Aligned_cols=276 Identities=31% Similarity=0.552 Sum_probs=245.5
Q ss_pred cccCCCcccchhhHHHHhhccHhHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhcCC---CcccchhHHHhhCC--CCC
Q 003426 198 GLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYND---TSVATKELTKSFGW--DTY 272 (821)
Q Consensus 198 GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~---~~v~~~~l~~~~~~--~~~ 272 (821)
||.|+||||||||+||+|++ .++..+|+.||..|+.+. ..++|..|.+++++ +.|
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~--------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~~f 60 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF--------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENELF 60 (300)
T ss_pred CccCCCcceehhHHHHHhhh--------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhcCCC
Confidence 89999999999999999998 468899999999999864 46899999999974 568
Q ss_pred CccccCcHHHHHHHHHHHHHHHhcCC-----------------cccccccccceeEEeeEEEEeccCceeeeeeeeeeEE
Q 003426 273 DSFMQHDVQELNRVLCEKLEDKMKGT-----------------VVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQ 335 (821)
Q Consensus 273 ~~~~Q~Da~Ef~~~Lld~Le~~~~~~-----------------~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l~ 335 (821)
..++||||+||+..|||.|+++++.. ...+.|.++|+|++.+.++|..|++.+.+.|+|++|+
T Consensus 61 ~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~Ls 140 (300)
T cd02663 61 DNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDLS 140 (300)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeCCCCCCccccceeEEec
Confidence 89999999999999999999988632 2346789999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHhhhhecccCCCccccccCC-eeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCcc
Q 003426 336 LDVKGCRDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQ 414 (821)
Q Consensus 336 l~v~~~~~l~esL~~~~~~E~l~g~n~y~c~~c~-~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~ 414 (821)
|+|++..+|+++|+.|+.+|.++|+|+|.|++|+ +++|.|+..|.++|++|+|||+||.|+...+...|++.+|.||.+
T Consensus 141 l~i~~~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ 220 (300)
T cd02663 141 IDVEQNTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLE 220 (300)
T ss_pred cCCCCcCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecCcE
Confidence 9999999999999999999999999999999996 678999999999999999999999999776778999999999999
Q ss_pred ccCCccCCCCCCCCcCCCCCccEEEeEEEEEeec-CCCccEEEEEEeCCCCCEEEeeCCceeEcchHhHHHhhcCCCCCC
Q 003426 415 LDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGG-VHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEEL 493 (821)
Q Consensus 415 Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVIvH~G~-~~~GHY~ayir~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~ 493 (821)
|+| ..+.+. .......|+|+|||+|.|+ +++|||+||+|. +++||+|||+.|++++.++|. +.+|+...
T Consensus 221 L~~----~~~~~~--~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~--~~~W~~fdD~~V~~~~~~~v~-~~~~~~~~- 290 (300)
T cd02663 221 LRL----FNTTDD--AENPDRLYELVAVVVHIGGGPNHGHYVSIVKS--HGGWLLFDDETVEKIDENAVE-EFFGDSPN- 290 (300)
T ss_pred Eec----cccccc--cCCCCeEEEEEEEEEEecCCCCCCceEEEEEC--CCcEEEEcCCceEEcCHHHHH-HhcCCCCC-
Confidence 999 444322 2234578999999999995 899999999999 899999999999999988884 46766431
Q ss_pred CCCCCCCCCCCcccccCccEEEEEEE
Q 003426 494 PPTNPGFNNTPFKFTKYSNAYMLVYI 519 (821)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~AYmL~Y~ 519 (821)
..+||||||+
T Consensus 291 ----------------~~~aYiLfY~ 300 (300)
T cd02663 291 ----------------QATAYVLFYQ 300 (300)
T ss_pred ----------------CCceEEEEeC
Confidence 3699999995
No 8
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.7e-55 Score=481.26 Aligned_cols=285 Identities=29% Similarity=0.529 Sum_probs=241.9
Q ss_pred cCCCCcccccccCCCcccchhhHHHHhhccHhHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhc---C-CCcccchhHH
Q 003426 189 DSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQY---N-DTSVATKELT 264 (821)
Q Consensus 189 ~sk~~~g~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~---s-~~~v~~~~l~ 264 (821)
..+..+|++||.|+||||||||+||+|+++|+||+.++++... ......+|.+|..|+. + .....|..|+
T Consensus 17 ~~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~------~~~~~~~q~~~~~l~~~~~~~~~~~~P~~~~ 90 (332)
T cd02671 17 KRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSL------ISSVEQLQSSFLLNPEKYNDELANQAPRRLL 90 (332)
T ss_pred ccccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhcc------cCcHHHHHHHHHHHHHHHhhcccccCHHHHH
Confidence 3455789999999999999999999999999999999876421 1223466777655432 2 2345688999
Q ss_pred HhhCC--CCCCccccCcHHHHHHHHHHHHHHHhcCCcccccccccceeEEeeEEEEeccCceeeeeeeeeeEEEeeCCC-
Q 003426 265 KSFGW--DTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGC- 341 (821)
Q Consensus 265 ~~~~~--~~~~~~~Q~Da~Ef~~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l~l~v~~~- 341 (821)
.++++ +.+..+.||||+||++.||+.|+. .+.++|+|++.+.++|.+|++.+.+.|+|++|+|+|++.
T Consensus 91 ~~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~---------~i~~~F~g~~~~~~~C~~C~~~s~~~E~f~~lsL~i~~~~ 161 (332)
T cd02671 91 NALREVNPMYEGYLQHDAQEVLQCILGNIQE---------LVEKDFQGQLVLRTRCLECETFTERREDFQDISVPVQESE 161 (332)
T ss_pred HHHHHhccccCCccccCHHHHHHHHHHHHHH---------HHHhhhceEEEEEEEeCCCCCeeceecccEEEEEEeCCCc
Confidence 99875 568889999999999999999984 577899999999999999999999999999999999864
Q ss_pred ------------------CCHHHHHHHhhhhecccCCCccccccCC-eeeeeeeEEEecCCCeeEEEEEEEEEcccc---
Q 003426 342 ------------------RDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMR--- 399 (821)
Q Consensus 342 ------------------~~l~esL~~~~~~E~l~g~n~y~c~~c~-~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~--- 399 (821)
.+|+++|+.|+++|.++|+|+|.|++|+ +++|.|+..|.++|++|+|||+||.++...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~ 241 (332)
T cd02671 162 LSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDC 241 (332)
T ss_pred ccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCEEEEEeeeeccccccccc
Confidence 4899999999999999999999999996 689999999999999999999999986432
Q ss_pred -cceeccCceEeCCccccCCccCCCCCCCCcCCCCCccEEEeEEEEEee-cCCCccEEEEEEeCCCCCEEEeeCCceeEc
Q 003426 400 -DAMVKINDRYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTLSDQWYKFDDERVTKE 477 (821)
Q Consensus 400 -~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVIvH~G-~~~~GHY~ayir~~~~~~W~~fnD~~V~~v 477 (821)
+...|+++.|.||..||| .++... .....|+|+|||+|.| ++++|||+||+| ||+|||+.|+++
T Consensus 242 ~~~~~Ki~~~v~fp~~L~~----~~~~~~----~~~~~Y~L~~VI~H~G~~~~~GHY~a~vr------W~~fdD~~V~~~ 307 (332)
T cd02671 242 YGGLSKVNTPLLTPLKLSL----EEWSTK----PKNDVYRLFAVVMHSGATISSGHYTAYVR------WLLFDDSEVKVT 307 (332)
T ss_pred cCCceecCccccCcccccc----ccccCC----CCCCeEEEEEEEEEcCCCCCCCeEEEEEE------EEEEcCcceEEc
Confidence 457899999999999999 555432 2457899999999999 589999999999 999999999999
Q ss_pred chHhHHHhhcCCCCCCCCCCCCCCCCCcccccCccEEEEEEE
Q 003426 478 DVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYI 519 (821)
Q Consensus 478 ~~~~v~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~ 519 (821)
+++++.+...|... ...+||||||.
T Consensus 308 ~~~~~~~~~~~~~~-----------------~~~~aYiLfY~ 332 (332)
T cd02671 308 EEKDFLEALSPNTS-----------------STSTPYLLFYK 332 (332)
T ss_pred cHHHHHhhcCCCCC-----------------CCCceEEEEEC
Confidence 99999876544332 23699999994
No 9
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-56 Score=483.62 Aligned_cols=297 Identities=27% Similarity=0.475 Sum_probs=259.2
Q ss_pred cccCCCCcccccccCCCcccchhhHHHHhhccHhHHHHHhcCCCCCCC-CCCCCHHHHHHHHHHHHhcCC-CcccchhHH
Q 003426 187 SYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTEND-LPSGSIPLALQSLFYKLQYND-TSVATKELT 264 (821)
Q Consensus 187 ~~~sk~~~g~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~~~-~~~~~~~~~Lq~Lf~~l~~s~-~~v~~~~l~ 264 (821)
.|+.-...| .||.|.|||||+||+||||-++|++.++|++-...... ....|+++++|........+. .++.|..++
T Consensus 100 ~~~~~~~~~-~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~~~~g~pisP~~i~ 178 (545)
T KOG1865|consen 100 SSDRPAAVG-AGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRALHNPGHPISPSQIL 178 (545)
T ss_pred cccccccCC-cceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHhcCCCCccChHHHH
Confidence 344333444 89999999999999999999999999999864322111 234589999998887666655 499999988
Q ss_pred HhhCC--CCCCccccCcHHHHHHHHHHHHHHHhc--------CCcccccccccceeEEeeEEEEeccCceeeeeeeeeeE
Q 003426 265 KSFGW--DTYDSFMQHDVQELNRVLCEKLEDKMK--------GTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDL 334 (821)
Q Consensus 265 ~~~~~--~~~~~~~Q~Da~Ef~~~Lld~Le~~~~--------~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l 334 (821)
..+.. ..|..+.|+|||||++.++|.|+...- .......|+++|+|-+++.++|.+|.++|.+.|+.++|
T Consensus 179 s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~~~~~sq~ttlv~~iFGG~LrS~vkC~~C~~vS~tyE~~~dl 258 (545)
T KOG1865|consen 179 SNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHKQVDPRSQDTTLVHQIFGGYLRSQIKCLHCKGVSDTYEPYLDL 258 (545)
T ss_pred HhhhhhcccccCCchhhHHHHHHHHHHHHHHhhcCCCccCCcccccceehhhhhccchhhceecccCCCcccccccccce
Confidence 76642 567888999999999999999998772 12245688999999999999999999999999999999
Q ss_pred EEeeCCCCCHHHHHHHhhhhecccCCCccccccCC-eeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCc
Q 003426 335 QLDVKGCRDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPL 413 (821)
Q Consensus 335 ~l~v~~~~~l~esL~~~~~~E~l~g~n~y~c~~c~-~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~ 413 (821)
+|+|....+|.++|+.|+.+|.|+|+|+|.|++|+ +++|.|+..|.++|+||+||||||+. +...||+..|.||+
T Consensus 259 tvei~d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~----~~~gKI~K~I~fPE 334 (545)
T KOG1865|consen 259 TLEIQDASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSN----GTGGKISKPVSFPE 334 (545)
T ss_pred EEEeccchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhcc----CcccccccccCCcc
Confidence 99999999999999999999999999999999995 78999999999999999999999995 67899999999999
Q ss_pred cccCCccCCCCCCCCcCCCCCccEEEeEEEEEee-cCCCccEEEEEEeCCCCCEEEeeCCceeEcchHhHHHhhcCCCCC
Q 003426 414 QLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEE 492 (821)
Q Consensus 414 ~Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVIvH~G-~~~~GHY~ayir~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~ 492 (821)
.||| .+|++.+.+ .+.+|.|+|||||.| ..++|||++|||.. +|.||+|||+.|+.++.+.|+.
T Consensus 335 ~LDl----~PyMS~~~e--~s~~Y~LYavlVH~g~~~~~GHY~cYvks~-~g~Wy~~DDS~V~~~~~~~VLs-------- 399 (545)
T KOG1865|consen 335 TLDL----QPYMSQPNE--GSTVYKLYAVLVHLGTSCHSGHYFCYVKSQ-NGQWYKMDDSEVTQSSIESVLS-------- 399 (545)
T ss_pred cccc----cccccCCCC--CCceEEEEEEEEeccccccCCceEEEEEcC-CCceEEccCceeeeccccceec--------
Confidence 9999 888885433 468999999999999 79999999999997 8899999999999999999976
Q ss_pred CCCCCCCCCCCCcccccCccEEEEEEEee
Q 003426 493 LPPTNPGFNNTPFKFTKYSNAYMLVYIRE 521 (821)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~ 521 (821)
..||||||.|+
T Consensus 400 ------------------q~AYmLfY~R~ 410 (545)
T KOG1865|consen 400 ------------------QQAYILFYARK 410 (545)
T ss_pred ------------------ccceEEEEEee
Confidence 47999999998
No 10
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.5e-54 Score=469.46 Aligned_cols=288 Identities=28% Similarity=0.422 Sum_probs=248.7
Q ss_pred cccCCCcccchhhHHHHhhccHhHHHHHhcCCCCC--CCCCCCCHHHHHHHHHHHHhcCCCcccchhHHHhhCC--CCC-
Q 003426 198 GLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTE--NDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGW--DTY- 272 (821)
Q Consensus 198 GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~--~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~~--~~~- 272 (821)
||.|+||||||||+||+|+++|+||+++++..... ......++.++|++||..|+.+..+++|.+|...++. ..+
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~i~p~~~~~~l~~~~~~f~ 80 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQEPVPPIEFLQLLRMAFPQFA 80 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhCCCcCCcHHHHHHHHHHCcCcc
Confidence 89999999999999999999999999998765422 1223457899999999999998889999999988753 333
Q ss_pred -----CccccCcHHHHHHHHHHHHHHHhcC-CcccccccccceeEEeeEEEEeccC-ceeeeeeeeeeEEEeeCCC---C
Q 003426 273 -----DSFMQHDVQELNRVLCEKLEDKMKG-TVVEGTIQQLFEGHHMNYIECINVD-YKSTRKESFYDLQLDVKGC---R 342 (821)
Q Consensus 273 -----~~~~Q~Da~Ef~~~Lld~Le~~~~~-~~~~~~i~~lF~g~~~~~i~C~~c~-~~s~~~e~f~~l~l~v~~~---~ 342 (821)
..++||||+||+..|++.|++++++ ......|.++|+|++.+.++|..|+ ..+.+.|+|++|+|++++. .
T Consensus 81 ~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~~~~~~e~f~~Lsl~i~~~~~~~ 160 (305)
T cd02657 81 EKQNQGGYAQQDAEECWSQLLSVLSQKLPGAGSKGSFIDQLFGIELETKMKCTESPDEEEVSTESEYKLQCHISITTEVN 160 (305)
T ss_pred cccCCCCccccCHHHHHHHHHHHHHHHhcccCCCCcHHHHhhceEEEEEEEcCCCCCCCccccccceEEEeecCCCcccc
Confidence 4559999999999999999999874 2345689999999999999999999 7999999999999999876 5
Q ss_pred CHHHHHHHhhhhecccCCCccccccCC-eeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCccccCCccC
Q 003426 343 DVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDREN 421 (821)
Q Consensus 343 ~l~esL~~~~~~E~l~g~n~y~c~~c~-~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~ 421 (821)
+|+++|+.+++++.. ..|+.|+ ...+.+...|.++|++|+|||+||.|+...+...|+++.|+||.+|||
T Consensus 161 ~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl---- 231 (305)
T cd02657 161 YLQDGLKKGLEEEIE-----KHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDL---- 231 (305)
T ss_pred cHHHHHHHhhhhhhh-----hcCcccCCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECCceEec----
Confidence 899999999987654 3578885 467889999999999999999999999887888999999999999999
Q ss_pred CCCCCCCcCCCCCccEEEeEEEEEee-cCCCccEEEEEEeCCCCCEEEeeCCceeEcchHhHHHhhcCCCCCCCCCCCCC
Q 003426 422 GKYLSPDADRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGF 500 (821)
Q Consensus 422 ~~~l~~~~~~~~~~~Y~L~gVIvH~G-~~~~GHY~ayir~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~ 500 (821)
.+|+. .+..|+|+|||+|.| ++++|||+||+|...+++||+|||+.|++++.++|.+ .+||+.
T Consensus 232 ~~~~~------~~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~~~W~~fdD~~V~~~~~~~v~~-~~~~~~--------- 295 (305)
T cd02657 232 YELCT------PSGYYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILK-LSGGGD--------- 295 (305)
T ss_pred ccccC------CCCcEEEEEEEEecCCCCCCcEEEEEEEcCCCCeEEEEECCceEEeCHHHHHh-hcCCCC---------
Confidence 66665 346899999999999 5899999999999756999999999999999988875 444432
Q ss_pred CCCCcccccCccEEEEEEE
Q 003426 501 NNTPFKFTKYSNAYMLVYI 519 (821)
Q Consensus 501 ~~~~~~~~~~~~AYmL~Y~ 519 (821)
..+||||||+
T Consensus 296 ---------~~~aYiL~Y~ 305 (305)
T cd02657 296 ---------WHIAYILLYK 305 (305)
T ss_pred ---------CceEEEEEEC
Confidence 2599999995
No 11
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.5e-54 Score=472.20 Aligned_cols=290 Identities=30% Similarity=0.502 Sum_probs=251.8
Q ss_pred ccccCCCcccchhhHHHHhhccHhHHHHHhcCCCC---CCCCCCCCHHHHHHHHHHHHhcC--CCcccchhHHHhhCC--
Q 003426 197 VGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTT---ENDLPSGSIPLALQSLFYKLQYN--DTSVATKELTKSFGW-- 269 (821)
Q Consensus 197 ~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~---~~~~~~~~~~~~Lq~Lf~~l~~s--~~~v~~~~l~~~~~~-- 269 (821)
+||.|+||||||||+||+|+++|+||++++..... ....+..++.++|++||..|+.+ ...+.|..+++++..
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~ 80 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWKHS 80 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhc
Confidence 69999999999999999999999999999875322 12344568999999999999554 356788888888732
Q ss_pred CCCCccccCcHHHHHHHHHHHHHHHhcCCc--------ccccccccceeEEeeEEEEeccCceeeeeeeeeeEEEeeCCC
Q 003426 270 DTYDSFMQHDVQELNRVLCEKLEDKMKGTV--------VEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGC 341 (821)
Q Consensus 270 ~~~~~~~Q~Da~Ef~~~Lld~Le~~~~~~~--------~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l~l~v~~~ 341 (821)
+.+..+.||||+||+..||+.|++++.... ..+.|.++|+|++.+.++|..|++.+.+.|+|+.|+|+++..
T Consensus 81 ~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~ 160 (328)
T cd02660 81 RNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEANDESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIPNK 160 (328)
T ss_pred hhhcccccccHHHHHHHHHHHHHHHhhcccccccccccCCceeEEecccEEEeeeEcCCCCCccceecccceeeeecccc
Confidence 357788999999999999999999886542 235789999999999999999999999999999999999865
Q ss_pred ---------------CCHHHHHHHhhhhecccCCCccccccCC-eeeeeeeEEEecCCCeeEEEEEEEEEcccccceecc
Q 003426 342 ---------------RDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKI 405 (821)
Q Consensus 342 ---------------~~l~esL~~~~~~E~l~g~n~y~c~~c~-~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki 405 (821)
.+|+++|+.|+.+|.+++.+ |.|++|+ ++++.++..|.++|++|+|||+||.|+.. +...|+
T Consensus 161 ~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~~~~~-~~~~K~ 238 (328)
T cd02660 161 STPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLN-KTSRKI 238 (328)
T ss_pred ccccccccccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEEEEecCCCceeEEEEEeEEecCC-CCCcCC
Confidence 79999999999999999888 9999997 45899999999999999999999999865 567899
Q ss_pred CceEeCCccccCCccCCCCCCC-------CcCCCCCccEEEeEEEEEeecCCCccEEEEEEeCCCCCEEEeeCCceeEcc
Q 003426 406 NDRYEFPLQLDLDRENGKYLSP-------DADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKED 478 (821)
Q Consensus 406 ~~~v~fP~~Ldl~~~~~~~l~~-------~~~~~~~~~Y~L~gVIvH~G~~~~GHY~ayir~~~~~~W~~fnD~~V~~v~ 478 (821)
++.|.||.+||| .+|+.. .........|+|+|||+|+|+.++|||+||+|.. +++||+|||+.|++++
T Consensus 239 ~~~v~fp~~Ldl----~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~~~~~~~-~~~W~~~nD~~V~~~~ 313 (328)
T cd02660 239 DTYVQFPLELNM----TPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGTLDTGHYTAYCRQG-DGQWFKFDDAMITRVS 313 (328)
T ss_pred CcEEeCCCEech----hhhcccccccccccccCCCCceEEEEEEEEeeccCCCCcEEEEEECC-CCcEEEEECCeeEECC
Confidence 999999999999 666653 1223456899999999999998999999999985 5899999999999999
Q ss_pred hHhHHHhhcCCCCCCCCCCCCCCCCCcccccCccEEEEEEE
Q 003426 479 VKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYI 519 (821)
Q Consensus 479 ~~~v~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~ 519 (821)
+++|+. .+||||||+
T Consensus 314 ~~~v~~--------------------------~~ayil~Y~ 328 (328)
T cd02660 314 EEEVLK--------------------------SQAYLLFYH 328 (328)
T ss_pred HHHhcC--------------------------CCcEEEEeC
Confidence 999864 479999995
No 12
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-53 Score=458.25 Aligned_cols=242 Identities=32% Similarity=0.535 Sum_probs=210.7
Q ss_pred cccCCCcccchhhHHHHhhccHhHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhHHHhhCCCCCCcccc
Q 003426 198 GLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQ 277 (821)
Q Consensus 198 GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~~~~~~~~~Q 277 (821)
||.|+||||||||+||+|+++|+||+++++ ..+.++..+... .+.+..++|
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~---------------~P~~~~~~l~~~--------------~~~f~~~~Q 51 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE---------------TPKELFSQVCRK--------------APQFKGYQQ 51 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH---------------CHHHHHHHHHHh--------------hHhhcCCch
Confidence 899999999999999999999999999986 112222222211 134677899
Q ss_pred CcHHHHHHHHHHHHHHHhcCCcccccccccceeEEeeEEEEeccCceeeeeeeeeeEEEeeCC----CCCHHHHHHHhhh
Q 003426 278 HDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKG----CRDVYASFDKYVE 353 (821)
Q Consensus 278 ~Da~Ef~~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l~l~v~~----~~~l~esL~~~~~ 353 (821)
|||+||+..|++.|+ +.+.++|.|++.+.+.|.+|++.+.+.|+|++|+|+++. ..+|+++|+.|+.
T Consensus 52 qDA~Efl~~lld~l~---------~~i~~~F~G~~~~~i~C~~C~~~s~~~E~f~~L~Lp~~~~~~~~~sL~~~L~~~~~ 122 (279)
T cd02667 52 QDSHELLRYLLDGLR---------TFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIKSECSIESCLKQFTE 122 (279)
T ss_pred hhHHHHHHHHHHHHH---------HhhhhhcceEEEEEEEcCCCCCEeCccccceEEecCCCcccCCCCCHHHHHHhhcC
Confidence 999999999999998 468899999999999999999999999999999998753 4689999999999
Q ss_pred hecccCCCccccccCCeeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCccccCCccCCCCCCC---CcC
Q 003426 354 VERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSP---DAD 430 (821)
Q Consensus 354 ~E~l~g~n~y~c~~c~~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~---~~~ 430 (821)
+|.++|+|+|.|+.|++ |.++..|.++|++|+|||+||.++... ...|++..|.||.+||| ++|+.+ ...
T Consensus 123 ~E~l~~~~~~~C~~C~~--a~k~~~i~~~P~~Lii~LkRF~~~~~~-~~~Ki~~~v~fP~~Ldl----~~~~~~~~~~~~ 195 (279)
T cd02667 123 VEILEGNNKFACENCTK--AKKQYLISKLPPVLVIHLKRFQQPRSA-NLRKVSRHVSFPEILDL----APFCDPKCNSSE 195 (279)
T ss_pred eeEecCCCcccCCccCc--eeeEeEhhhCCCeEEEEEeccccCccc-CceecCceEeCCCccch----hhccCccccccc
Confidence 99999999999999987 899999999999999999999998653 67899999999999999 777765 223
Q ss_pred CCCCccEEEeEEEEEeecCCCccEEEEEEeCC---------------------CCCEEEeeCCceeEcchHhHHH
Q 003426 431 RSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTL---------------------SDQWYKFDDERVTKEDVKRALE 484 (821)
Q Consensus 431 ~~~~~~Y~L~gVIvH~G~~~~GHY~ayir~~~---------------------~~~W~~fnD~~V~~v~~~~v~~ 484 (821)
......|+|+|||+|.|+.++|||+||+|... ++.||+|||+.|++++.++|+.
T Consensus 196 ~~~~~~Y~L~~vi~H~G~~~~GHY~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~~~v~~ 270 (279)
T cd02667 196 DKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLK 270 (279)
T ss_pred cCCCceEEEEEEEEEeCCCCCCEeEEEEEcCccccccccccccccccccCCCCCCcEEEEECCccEECCHHHhcc
Confidence 34567999999999999889999999999754 6799999999999999999864
No 13
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-54 Score=477.61 Aligned_cols=330 Identities=34% Similarity=0.547 Sum_probs=283.4
Q ss_pred cCCCCcccccccCCCcccchhhHHHHhhccHhHHHHHhcCCCCCCCCCCCC----HHHHHHHHHHHHhcCC-CcccchhH
Q 003426 189 DSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGS----IPLALQSLFYKLQYND-TSVATKEL 263 (821)
Q Consensus 189 ~sk~~~g~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~~~~~~~~----~~~~Lq~Lf~~l~~s~-~~v~~~~l 263 (821)
.++..-|+|||+|-|+|||||+++|-|+++|.+|..+..+... .+.+.-+ +++.||++|.+|..+. +++.|..|
T Consensus 88 gsRpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~-td~pd~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg~ 166 (944)
T KOG1866|consen 88 GSRPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGT-TDLPDMSGDEKVLRHLQVIFGHLAASQLQYYVPEGF 166 (944)
T ss_pred CCCCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhccc-ccchhhcchHHHHHHHHHHHHHHHHHhhhhhcchhH
Confidence 4667778999999999999999999999999999888665432 2222223 8999999999999987 78999999
Q ss_pred HHhhC-C-CCCCccccCcHHHHHHHHHHHHHHHhcCCcccccccccceeEEeeEEEEeccCceeeeeeeeeeEEEeeCCC
Q 003426 264 TKSFG-W-DTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGC 341 (821)
Q Consensus 264 ~~~~~-~-~~~~~~~Q~Da~Ef~~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l~l~v~~~ 341 (821)
.+.|. | ......+||||-||+..|+|.+++.+|+-.....+++.|+|.....-.|..|.+.-++.|.|..|+|.|. .
T Consensus 167 Wk~Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg~p~lf~n~f~G~ysdqKIC~~CpHRY~~eE~F~~l~l~i~-~ 245 (944)
T KOG1866|consen 167 WKQFRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLGHPQLFSNTFGGSYSDQKICQGCPHRYECEESFTTLNLDIR-H 245 (944)
T ss_pred HHHhhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhCCcHHHHHHhcCccchhhhhccCCcccCccccceeeeeecc-c
Confidence 99986 3 4456679999999999999999999998888889999999999999999999999999999999999999 8
Q ss_pred CCHHHHHHHhhhhecccCCCccccccCC-eeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCccccCCcc
Q 003426 342 RDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRE 420 (821)
Q Consensus 342 ~~l~esL~~~~~~E~l~g~n~y~c~~c~-~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~ 420 (821)
.+|++||++|++.|.++|.|.|+|++|. |.+..|+++|++||++|.||||||.||+.+...+|.|+.|+||-+|||.||
T Consensus 246 ~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ldMePY 325 (944)
T KOG1866|consen 246 QNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRELDMEPY 325 (944)
T ss_pred chHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccchhhcCCce
Confidence 9999999999999999999999999995 678899999999999999999999999999999999999999999999777
Q ss_pred CCCCCC--------CC---cCCCCCccEEEeEEEEEeecCCCccEEEEEEeCC---CCCEEEeeCCceeEcchHhHHHhh
Q 003426 421 NGKYLS--------PD---ADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTL---SDQWYKFDDERVTKEDVKRALEEQ 486 (821)
Q Consensus 421 ~~~~l~--------~~---~~~~~~~~Y~L~gVIvH~G~~~~GHY~ayir~~~---~~~W~~fnD~~V~~v~~~~v~~~~ 486 (821)
+..-+. .. .....+.+|+|+|||||+|.+++||||+||+... .++||+|||..|++.+..+...++
T Consensus 326 tvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSGqAsaGHYySfIk~rr~~~~~kWykfnD~~Vte~~~n~me~~c 405 (944)
T KOG1866|consen 326 TVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSGQASAGHYYSFIKQRRGEDGNKWYKFNDGDVTECKMNEMENEC 405 (944)
T ss_pred eehhhhhhccccCCcCcccccccCcceeEEEEEEEecccccCcchhhhhhhhccCCCCceEeccCccccccchhhHHHHh
Confidence 522111 10 0123567999999999999999999999999743 359999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCcccccCccEEEEEEEeeccccc
Q 003426 487 YGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRESDKDK 526 (821)
Q Consensus 487 ~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~~~~~ 526 (821)
|||..... .+.. .-.+|+.|||||||.|.++.+.
T Consensus 406 fGGey~q~--~~~~----~~rrR~WNAYmlFYer~~d~p~ 439 (944)
T KOG1866|consen 406 FGGEYMQM--MKRM----SYRRRWWNAYMLFYERMDDIPT 439 (944)
T ss_pred hcchhhhc--cccc----chHHHhhhhHHHHHHHhcCCCc
Confidence 99986421 1111 1233788999999999987653
No 14
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.9e-51 Score=447.47 Aligned_cols=277 Identities=29% Similarity=0.476 Sum_probs=242.1
Q ss_pred ccccCCCcccchhhHHHHhhccHhHHHHHhcCCCCC-CCCCCCCHHHHHHHHHHHHhcC-CCcccchhHHHhhC--CCCC
Q 003426 197 VGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTE-NDLPSGSIPLALQSLFYKLQYN-DTSVATKELTKSFG--WDTY 272 (821)
Q Consensus 197 ~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~-~~~~~~~~~~~Lq~Lf~~l~~s-~~~v~~~~l~~~~~--~~~~ 272 (821)
+||.|.||||||||+||+|+++|+||+++++..... ...+..++.++|+++|..+..+ ...+.|..|..+++ ++.+
T Consensus 2 ~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~f 81 (304)
T cd02661 2 AGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQISKHF 81 (304)
T ss_pred CCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHHHHHhh
Confidence 799999999999999999999999999998654322 2233458999999999998765 46677888777664 4568
Q ss_pred CccccCcHHHHHHHHHHHHHHHhcCCc-----------ccccccccceeEEeeEEEEeccCceeeeeeeeeeEEEeeCCC
Q 003426 273 DSFMQHDVQELNRVLCEKLEDKMKGTV-----------VEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGC 341 (821)
Q Consensus 273 ~~~~Q~Da~Ef~~~Lld~Le~~~~~~~-----------~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l~l~v~~~ 341 (821)
..+.||||+||+..|++.|++++.... ..+.+.++|+|++.+.+.|..|+..+.+.|+|+.|+|++++.
T Consensus 82 ~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~~~~l~l~i~~~ 161 (304)
T cd02661 82 RIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKGA 161 (304)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCChhhhcCCcEEeeeEEeCCCCCCcCccccceeeeeecCCC
Confidence 889999999999999999998764322 245789999999999999999999999999999999999998
Q ss_pred CCHHHHHHHhhhhecccCCCccccccCCe-eeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCccccCCcc
Q 003426 342 RDVYASFDKYVEVERLEGDNKYHAEEHGL-QDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRE 420 (821)
Q Consensus 342 ~~l~esL~~~~~~E~l~g~n~y~c~~c~~-~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~ 420 (821)
.+++++|+.++.+|.++|+++|.|+.|++ +.+.++..|.++|++|+|||+||.++ ...|+++.|.||.+|||
T Consensus 162 ~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~----~~~Ki~~~v~f~~~L~l--- 234 (304)
T cd02661 162 DSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNF----RGGKINKQISFPETLDL--- 234 (304)
T ss_pred CcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccC----CccccCCeEecCCeech---
Confidence 99999999999999999999999999974 67899999999999999999999987 46799999999999999
Q ss_pred CCCCCCCCcCCCCCccEEEeEEEEEeec-CCCccEEEEEEeCCCCCEEEeeCCceeEcchHhHHH
Q 003426 421 NGKYLSPDADRSVRNLYTLHSVLVHSGG-VHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALE 484 (821)
Q Consensus 421 ~~~~l~~~~~~~~~~~Y~L~gVIvH~G~-~~~GHY~ayir~~~~~~W~~fnD~~V~~v~~~~v~~ 484 (821)
.+|+..+ ......|+|+|||+|.|+ +++|||+||+|.. +++||+|||+.|+++++++|+.
T Consensus 235 -~~~~~~~--~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~-~~~W~~~nD~~V~~v~~~~v~~ 295 (304)
T cd02661 235 -SPYMSQP--NDGPLKYKLYAVLVHSGFSPHSGHYYCYVKSS-NGKWYNMDDSKVSPVSIETVLS 295 (304)
T ss_pred -hhccccC--CCCCceeeEEEEEEECCCCCCCcCCEEEEECC-CCCEEEEeCCeeEECCHHHhcC
Confidence 6777653 234678999999999996 5999999999984 7899999999999999999864
No 15
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3e-50 Score=439.78 Aligned_cols=273 Identities=24% Similarity=0.351 Sum_probs=234.1
Q ss_pred cccCCCcccchhhHHHHhhccHhHHHHHhcCCC---CCCCCCCCCHHHHHHHHHHHHhcCC---------------Cccc
Q 003426 198 GLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPT---TENDLPSGSIPLALQSLFYKLQYND---------------TSVA 259 (821)
Q Consensus 198 GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~---~~~~~~~~~~~~~Lq~Lf~~l~~s~---------------~~v~ 259 (821)
||.|+||||||||+||+|+++|+||++++.... .....+..++.++|++||..|+... .++.
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 899999999999999999999999999976321 1222345689999999999997632 3588
Q ss_pred chhHHHhhCC--CCCCccccCcHHHHHHHHHHHHHHHhcCCcccccccccceeEEeeEEEEeccCceeeeeeeeeeEEEe
Q 003426 260 TKELTKSFGW--DTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLD 337 (821)
Q Consensus 260 ~~~l~~~~~~--~~~~~~~Q~Da~Ef~~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l~l~ 337 (821)
|..|...+++ +.|..+.||||+||++.||+.|+++++... ...+.++|+|.+.+.++|..|+..+.+.|+|.+|+|+
T Consensus 81 p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~-~~~~~~~f~~~~~~~i~C~~C~~~s~~~e~~~~lsL~ 159 (311)
T cd02658 81 PSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKNL-GLNPNDLFKFMIEDRLECLSCKKVKYTSELSEILSLP 159 (311)
T ss_pred cHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhcccc-cCCchhheEEEeeEEEEcCCCCCEEEeecceeEEeee
Confidence 9999998864 678889999999999999999999986432 3457899999999999999999999999999999999
Q ss_pred eCCCC--------------CHHHHHHHhhhhecccCCCccccccCC-eeeeeeeEEEecCCCeeEEEEEEEEEcccccce
Q 003426 338 VKGCR--------------DVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAM 402 (821)
Q Consensus 338 v~~~~--------------~l~esL~~~~~~E~l~g~n~y~c~~c~-~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~ 402 (821)
++... +|+++|+.|+.+|.++ +.|+.|+ ++.|.++..|.++|++|+|||+||.++. ....
T Consensus 160 l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~----~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~-~~~~ 234 (311)
T cd02658 160 VPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLE-NWVP 234 (311)
T ss_pred cccccccccccccccCCCCCHHHHHHHHcCccccc----ccccCCCCcccEEEEEEeecCCceEEEEeEEEEecC-CCce
Confidence 87543 8999999999999997 5788896 5789999999999999999999999963 3457
Q ss_pred eccCceEeCCccccCCccCCCCCCCCcCCCCCccEEEeEEEEEeec-CCCccEEEEEEeC--CCCCEEEeeCCceeEcch
Q 003426 403 VKINDRYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGG-VHGGHYYAFIRPT--LSDQWYKFDDERVTKEDV 479 (821)
Q Consensus 403 ~Ki~~~v~fP~~Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVIvH~G~-~~~GHY~ayir~~--~~~~W~~fnD~~V~~v~~ 479 (821)
.|++..|.||..|. +..|+|+|||+|.|+ +++|||+||+|.. .+++||+|||+.|++++.
T Consensus 235 ~Ki~~~v~~p~~l~-----------------~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~~~~~~~W~~fnD~~V~~~~~ 297 (311)
T cd02658 235 KKLDVPIDVPEELG-----------------PGKYELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQD 297 (311)
T ss_pred EeeccccccCCcCC-----------------CCcEEEEEEEEccCCCCCCcceEEEEeCCCCCCCCEEEecCceeEECCc
Confidence 89999999998761 357999999999995 8999999999986 348999999999999998
Q ss_pred HhHHHhhcCCCCCCCCCCCCCCCCCcccccCccEEEEEEE
Q 003426 480 KRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYI 519 (821)
Q Consensus 480 ~~v~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~ 519 (821)
.+++. .+||||||+
T Consensus 298 ~~~~~--------------------------~~~YilfY~ 311 (311)
T cd02658 298 PPEMK--------------------------KLGYIYFYQ 311 (311)
T ss_pred ccccC--------------------------CcceEEEEC
Confidence 87733 589999995
No 16
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.8e-50 Score=457.23 Aligned_cols=294 Identities=23% Similarity=0.301 Sum_probs=240.1
Q ss_pred CCCcccccccCCCcccchhhHHHHhhccHhHHHHHhcCCCCCC-CCCCCCHHHHHHHHHHHHhcC---CCcccchhHHHh
Q 003426 191 KKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTEN-DLPSGSIPLALQSLFYKLQYN---DTSVATKELTKS 266 (821)
Q Consensus 191 k~~~g~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~~-~~~~~~~~~~Lq~Lf~~l~~s---~~~v~~~~l~~~ 266 (821)
...+|++||.|+||||||||+||+|+++|+||++++....... .....++..+|+.++..|+.. ..+++|.+|+++
T Consensus 114 ~~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~ 193 (440)
T cd02669 114 PYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQA 193 (440)
T ss_pred CccCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHH
Confidence 3457999999999999999999999999999999987543211 123457899999999999875 368999999998
Q ss_pred hCC---CCCCccccCcHHHHHHHHHHHHHHHhcCC--cccccccccceeEEeeEEEEeccC---------------ceee
Q 003426 267 FGW---DTYDSFMQHDVQELNRVLCEKLEDKMKGT--VVEGTIQQLFEGHHMNYIECINVD---------------YKST 326 (821)
Q Consensus 267 ~~~---~~~~~~~Q~Da~Ef~~~Lld~Le~~~~~~--~~~~~i~~lF~g~~~~~i~C~~c~---------------~~s~ 326 (821)
+++ ..+..++||||+||+.+||+.|++++++. ...+.|.++|+|++++.++|..|. ..+.
T Consensus 194 l~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~~~~~~ii~~~F~G~l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~ 273 (440)
T cd02669 194 VSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSKKPNSSIIHDCFQGKVQIETQKIKPHAEEEGSKDKFFKDSRVKKT 273 (440)
T ss_pred HHhhcccccCCcccCCHHHHHHHHHHHHHHHhccCCCCCCCcceeccCceEEEEEEeeccccccccccccccccccccee
Confidence 864 35778899999999999999999999863 457789999999999999987654 2456
Q ss_pred eeeeeeeEEEeeCCCCCHH-----HHHHHhhhhecccCCCccccccCC-eeeeeeeEEEecCCCeeEEEEEEEEEccccc
Q 003426 327 RKESFYDLQLDVKGCRDVY-----ASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRD 400 (821)
Q Consensus 327 ~~e~f~~l~l~v~~~~~l~-----esL~~~~~~E~l~g~n~y~c~~c~-~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~ 400 (821)
+.++|++|+|+|+...... .++....-.|.|+ +|.|+.|. .+++.|+..|.+||++|+||||||.++. .
T Consensus 274 ~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~---ky~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~~~--~ 348 (440)
T cd02669 274 SVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLK---KYDGKTETELKDSLKRYLISRLPKYLIFHIKRFSKNN--F 348 (440)
T ss_pred eeccceEEEecCCCCccccccccccccCcccHHHHHH---hcCCccceecccceEEEEEeeCCcEEEEEEecccCCC--C
Confidence 7899999999998753221 1222222333343 47778884 5678999999999999999999999874 5
Q ss_pred ceeccCceEeCCcc-ccCCccCCCCCCCCc-CCCCCccEEEeEEEEEeecC-CCccEEEEEEeCCCCCEEEeeCCceeEc
Q 003426 401 AMVKINDRYEFPLQ-LDLDRENGKYLSPDA-DRSVRNLYTLHSVLVHSGGV-HGGHYYAFIRPTLSDQWYKFDDERVTKE 477 (821)
Q Consensus 401 ~~~Ki~~~v~fP~~-Ldl~~~~~~~l~~~~-~~~~~~~Y~L~gVIvH~G~~-~~GHY~ayir~~~~~~W~~fnD~~V~~v 477 (821)
...|+++.|+||.. ||| ++|+.++. ....+..|+|+|||+|.|+. ++|||+||+|+..+|+||+|||+.|+++
T Consensus 349 ~~~K~~t~V~FP~~~LDm----~~y~~~~~~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v 424 (440)
T cd02669 349 FKEKNPTIVNFPIKNLDL----SDYVHFDKPSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEV 424 (440)
T ss_pred ccccCCCEEECCCCccch----hhhhCccccccCCCceEEEEEEEEEeccCCCCeeEEEEEEcCCCCeEEEEECCeeeEc
Confidence 67899999999997 899 77776433 23456899999999999987 9999999999877899999999999999
Q ss_pred chHhHHHhhcCCCCCCCCCCCCCCCCCcccccCccEEEEEEE
Q 003426 478 DVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYI 519 (821)
Q Consensus 478 ~~~~v~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~ 519 (821)
++++|+. ..||||||+
T Consensus 425 ~~~~v~~--------------------------~eaYll~Y~ 440 (440)
T cd02669 425 LPQLIFL--------------------------SESYIQIWE 440 (440)
T ss_pred CHHHhcc--------------------------CCceEEEeC
Confidence 9999865 589999995
No 17
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.1e-48 Score=408.49 Aligned_cols=203 Identities=31% Similarity=0.508 Sum_probs=186.4
Q ss_pred cccCCCcccchhhHHHHhhccHhHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhHHHhhCCCCCCcccc
Q 003426 198 GLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQ 277 (821)
Q Consensus 198 GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~~~~~~~~~Q 277 (821)
||.|.||||||||+||+|+++|+||+++++.. .|
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~----------------------------------------------~Q 34 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL----------------------------------------------EQ 34 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH----------------------------------------------hh
Confidence 89999999999999999999999999997532 79
Q ss_pred CcHHHHHHHHHHHHHHHhcCCcccccccccceeEEeeEEEEeccCceee-eeeeeeeEEEeeCCC-----CCHHHHHHHh
Q 003426 278 HDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKST-RKESFYDLQLDVKGC-----RDVYASFDKY 351 (821)
Q Consensus 278 ~Da~Ef~~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~-~~e~f~~l~l~v~~~-----~~l~esL~~~ 351 (821)
|||+||+..|++.|+ ..+.++|.|++.+.++|..|++.+. +.|+|++|+|+++.. .+|+++|+.|
T Consensus 35 qDa~EFl~~ll~~l~---------~~i~~~F~g~~~~~i~C~~C~~~s~~~~e~f~~LsL~ip~~~~~~~~sl~~~L~~~ 105 (240)
T cd02662 35 QDAHELFQVLLETLE---------QLLKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQSSGSGTTLEHCLDDF 105 (240)
T ss_pred cCHHHHHHHHHHHHH---------HhccCccccEEEEEEEeCCCCCccCcceeeeeeeEecccccCCCCCCCHHHHHHHh
Confidence 999999999999999 3577899999999999999999876 599999999999875 5899999999
Q ss_pred hhhecccCCCccccccCCeeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCccccCCccCCCCCCCCcCC
Q 003426 352 VEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDADR 431 (821)
Q Consensus 352 ~~~E~l~g~n~y~c~~c~~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~~~ 431 (821)
+.+|.++| |.|+.| +..|.++|++|+|||+||.||.. +...|+++.|+||.+|
T Consensus 106 ~~~E~l~~---~~C~~C-------~~~i~~lP~vLii~LkRF~~~~~-~~~~K~~~~v~fp~~l---------------- 158 (240)
T cd02662 106 LSTEIIDD---YKCDRC-------QTVIVRLPQILCIHLSRSVFDGR-GTSTKNSCKVSFPERL---------------- 158 (240)
T ss_pred cCcccccC---cCCCCC-------eEEeecCCcEEEEEEEEEEEcCC-CceeeeccEEECCCcc----------------
Confidence 99999987 889999 67899999999999999999976 7889999999999987
Q ss_pred CCCccEEEeEEEEEeecCCCccEEEEEEeC--------------------CCCCEEEeeCCceeEcchHhHH
Q 003426 432 SVRNLYTLHSVLVHSGGVHGGHYYAFIRPT--------------------LSDQWYKFDDERVTKEDVKRAL 483 (821)
Q Consensus 432 ~~~~~Y~L~gVIvH~G~~~~GHY~ayir~~--------------------~~~~W~~fnD~~V~~v~~~~v~ 483 (821)
....|+|+|||+|.|+.++|||+||+|.. ..++||+|||+.|++++.++|+
T Consensus 159 -~~~~Y~L~avi~H~G~~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~ 229 (240)
T cd02662 159 -PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSESEVL 229 (240)
T ss_pred -CCceEEEEEEEEEeccCCCceEEEEEeCCCcccccccccccccccccCccCCCEEEEechheEEeCHHHHh
Confidence 24689999999999988999999999986 3489999999999999999996
No 18
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.6e-49 Score=430.67 Aligned_cols=269 Identities=28% Similarity=0.421 Sum_probs=229.1
Q ss_pred cccccCCCcccchhhHHHHhhccHhHHHHHhcCCCCCC--------------CC-------CCCCHHHHHHHHHHHHhcC
Q 003426 196 YVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTEN--------------DL-------PSGSIPLALQSLFYKLQYN 254 (821)
Q Consensus 196 ~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~~--------------~~-------~~~~~~~~Lq~Lf~~l~~s 254 (821)
.+||.|+||||||||+||+||++|+||++|++++.... .. ...+++.+|++||..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 38999999999999999999999999999998763211 00 0114889999999999988
Q ss_pred C-CcccchhHHHhhCCCCCCccccCcHHHHHHHHHHHHHHHhcCCcc-------------cccccccceeEEeeEEEEec
Q 003426 255 D-TSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVV-------------EGTIQQLFEGHHMNYIECIN 320 (821)
Q Consensus 255 ~-~~v~~~~l~~~~~~~~~~~~~Q~Da~Ef~~~Lld~Le~~~~~~~~-------------~~~i~~lF~g~~~~~i~C~~ 320 (821)
. ..+.|..++..+.+ .||||+||++.||+.|+.+++.... .+.|.++|.|++.+.++|..
T Consensus 81 ~~~~v~P~~~l~~l~~------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF~G~~~~~i~c~~ 154 (343)
T cd02666 81 NTRSVTPSKELAYLAL------RQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQLVPES 154 (343)
T ss_pred CCCccCcHHHHHhccc------cccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhhhHhceeeEEEEEEecc
Confidence 7 78899998887754 8999999999999999999986553 55799999999999999999
Q ss_pred cC---ceeeeeeeeeeEEEeeCC----------CCCHHHHHHHhhhhecccCCCccccccCCeeeeeeeEEEecCCCeeE
Q 003426 321 VD---YKSTRKESFYDLQLDVKG----------CRDVYASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQ 387 (821)
Q Consensus 321 c~---~~s~~~e~f~~l~l~v~~----------~~~l~esL~~~~~~E~l~g~n~y~c~~c~~~~a~k~~~~~~lP~vL~ 387 (821)
|+ +.+.+.|+|++|+|+|++ .++|+++|+.|++.|. |.+||++|.
T Consensus 155 ~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~----------------------~~~~P~vl~ 212 (343)
T cd02666 155 MGNQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS----------------------LTKLPQRSQ 212 (343)
T ss_pred cCCCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh----------------------hccCCHHHH
Confidence 87 788899999999999984 6899999999998777 788999999
Q ss_pred EEEEEEEEcccccceeccCceEeCCccccCCccCCCCCCCCcC--------------------------CCCCccEEEeE
Q 003426 388 LQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDAD--------------------------RSVRNLYTLHS 441 (821)
Q Consensus 388 i~L~Rf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~~--------------------------~~~~~~Y~L~g 441 (821)
|||+ +|.......+.+++++||..+|. .+++..+.. ......|+|+|
T Consensus 213 ~qlq---~~~~~~~~~~~~dry~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Y~L~a 285 (343)
T cd02666 213 VQAQ---LAQPLQRELISMDRYELPSSIDD----IDELIREAIQSESSLVRQAQNELAELKHEIEKQFDDLKSYGYRLHA 285 (343)
T ss_pred HHHh---hcccccchheeeccccccchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEE
Confidence 9999 56666777888888888887777 444332211 22578899999
Q ss_pred EEEEeecCCCccEEEEEEeCCCCCEEEeeCCceeEcchHhHHHhhcCCCCCCCCCCCCCCCCCcccccCccEEEEEEE
Q 003426 442 VLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYI 519 (821)
Q Consensus 442 VIvH~G~~~~GHY~ayir~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~ 519 (821)
||+|+|+.++|||++|+|+..++.||+|||+.|++++.++++..++|+. .+||||+|+
T Consensus 286 vv~H~G~~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~~--------------------~~pY~l~Yv 343 (343)
T cd02666 286 VFIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNT--------------------ATPYFLVYV 343 (343)
T ss_pred EEEeecCCCCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCCC--------------------CCCEEEEeC
Confidence 9999999999999999999877899999999999999999999887764 489999995
No 19
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.3e-48 Score=398.74 Aligned_cols=220 Identities=31% Similarity=0.544 Sum_probs=196.2
Q ss_pred cccCCCcccchhhHHHHhhccHhHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhHHHhhCCCCCCcccc
Q 003426 198 GLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQ 277 (821)
Q Consensus 198 GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~~~~~~~~~Q 277 (821)
||.|.|||||+|++.|+|+. +|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~----------------------------------------------------------~Q 22 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFS----------------------------------------------------------QQ 22 (228)
T ss_pred CccccCcchhHHHHHHHHHH----------------------------------------------------------HH
Confidence 89999999999999999987 59
Q ss_pred CcHHHHHHHHHHHHHHHhcCC--------cccccccccceeEEeeEEEEeccCceeeeeeeeeeEEEeeCCCCCHHHHHH
Q 003426 278 HDVQELNRVLCEKLEDKMKGT--------VVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFD 349 (821)
Q Consensus 278 ~Da~Ef~~~Lld~Le~~~~~~--------~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l~l~v~~~~~l~esL~ 349 (821)
|||+||++.||+.|++.++.+ ..++.|.++|.|++.+.+.| |+..+.+.|+|++|+|+|++..+|++||+
T Consensus 23 QDa~Ef~~~Lld~Le~~l~~~~~~~~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~~E~F~~L~l~i~~~~~L~e~L~ 100 (228)
T cd02665 23 QDVSEFTHLLLDWLEDAFQAAAEAISPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCNCETFGQYPLQVNGYGNLHECLE 100 (228)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccccccchHhhceEEEEEEEEEE--CCCcccccCccEEEEEEECCCCCHHHHHH
Confidence 999999999999999999744 34568999999999976655 78889999999999999999999999999
Q ss_pred HhhhhecccCCCccccccCCeeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCccccCCccCCCCCCCCc
Q 003426 350 KYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDA 429 (821)
Q Consensus 350 ~~~~~E~l~g~n~y~c~~c~~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~ 429 (821)
.++.+|.+++++.++ ...+.++..|.++|++|+|||+||.|+. +...|++++|+||.+|.
T Consensus 101 ~~~~ee~l~~~~~~~-----~~~~~~~~~i~~lP~vL~i~LkRF~~~~--~~~~Ki~~~v~FP~~l~------------- 160 (228)
T cd02665 101 AAMFEGEVELLPSDH-----SVKSGQERWFTELPPVLTFELSRFEFNQ--GRPEKIHDKLEFPQIIQ------------- 160 (228)
T ss_pred Hhhhhcccccccccc-----hhhhhhhhhhhhCChhhEEEeEeeEEcC--CccEECCEEEEeeCccC-------------
Confidence 999999998865432 2345677789999999999999999985 66799999999999872
Q ss_pred CCCCCccEEEeEEEEEeecCCCccEEEEEEeCCCCCEEEeeCCceeEcchHhHHHhhcCCCCCCCCCCCCCCCCCccccc
Q 003426 430 DRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTK 509 (821)
Q Consensus 430 ~~~~~~~Y~L~gVIvH~G~~~~GHY~ayir~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~~~~~~~~~ 509 (821)
...|+|+|||+|.|++++|||+||+|+..+++||+|||+.|++++.++|+.++|||.+.
T Consensus 161 ----~~~Y~L~aVi~H~G~~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~~----------------- 219 (228)
T cd02665 161 ----QVPYELHAVLVHEGQANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRN----------------- 219 (228)
T ss_pred ----CceeEEEEEEEecCCCCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCCC-----------------
Confidence 24799999999999999999999999877889999999999999999999999999742
Q ss_pred CccEEEEEEE
Q 003426 510 YSNAYMLVYI 519 (821)
Q Consensus 510 ~~~AYmL~Y~ 519 (821)
.+||||||+
T Consensus 220 -~~AYiLfYv 228 (228)
T cd02665 220 -PSAYCLMYI 228 (228)
T ss_pred -CceEEEEEC
Confidence 599999995
No 20
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-44 Score=363.30 Aligned_cols=281 Identities=24% Similarity=0.403 Sum_probs=223.3
Q ss_pred ccccccCCCcccchhhHHHHhhccHhHHHHHh------cCCCCCCCCCCCCHHHHHHHHHHHHhc-----CCCcccchhH
Q 003426 195 GYVGLKNQGATCYMNSLLQTLYHIPYFRKAVY------HMPTTENDLPSGSIPLALQSLFYKLQY-----NDTSVATKEL 263 (821)
Q Consensus 195 g~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~------~~~~~~~~~~~~~~~~~Lq~Lf~~l~~-----s~~~v~~~~l 263 (821)
..+||.|.|||||||++||||+.+..+..++. .+.+.......++ .+.+-|..|+. +..+|+|..|
T Consensus 70 ~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~---~~~k~F~~l~~~~~~Hg~~sis~~nF 146 (415)
T COG5533 70 PPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGS---NAFKQFIALYETPGCHGPKSISPRNF 146 (415)
T ss_pred CCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcch---hHHHHHHHHHhccccCCCcccchHHH
Confidence 35899999999999999999999999987543 2333222222222 33334444433 4577999999
Q ss_pred HHhhCC--CCCCccccCcHHHHHHHHHHHHHHHhcCCc-----------------------------------ccccccc
Q 003426 264 TKSFGW--DTYDSFMQHDVQELNRVLCEKLEDKMKGTV-----------------------------------VEGTIQQ 306 (821)
Q Consensus 264 ~~~~~~--~~~~~~~Q~Da~Ef~~~Lld~Le~~~~~~~-----------------------------------~~~~i~~ 306 (821)
.+.++. +.|...+|||+|||+.+++|.|++++++.. ..+.+.+
T Consensus 147 ~~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~~ 226 (415)
T COG5533 147 IDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAK 226 (415)
T ss_pred HHHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHHH
Confidence 999874 567778999999999999999999987533 2356789
Q ss_pred cceeEEeeEEEEeccCceeeeeeeeeeEEEeeCCCC--CHHHHHHHhhhhecccCCCccccccCC-eeeeeeeEEEecCC
Q 003426 307 LFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCR--DVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFP 383 (821)
Q Consensus 307 lF~g~~~~~i~C~~c~~~s~~~e~f~~l~l~v~~~~--~l~esL~~~~~~E~l~g~n~y~c~~c~-~~~a~k~~~~~~lP 383 (821)
.|.|+..+...|..|++.|+...+|..|.+++...+ .|+|||+.|.++|.|+|+..|.|++|+ ++.++|++.|..+|
T Consensus 227 ~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~~I~~lP 306 (415)
T COG5533 227 TFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVLP 306 (415)
T ss_pred HHhhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccccchheEEEEecC
Confidence 999999999999999999999999999999998654 599999999999999999999999997 56899999999999
Q ss_pred CeeEEEEEEEEEcccccceeccCceEeCCccccCCccCCCCCCCCc-------------CCCCCccEEEeEEEEEeecCC
Q 003426 384 PVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDA-------------DRSVRNLYTLHSVLVHSGGVH 450 (821)
Q Consensus 384 ~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~-------------~~~~~~~Y~L~gVIvH~G~~~ 450 (821)
++|+|||+||.. .|..|..||+. ++.+.+. ..-.+.+|.|+|||||.|+.+
T Consensus 307 ~~LII~i~RF~i------------~V~~~~kiD~p----~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G~L~ 370 (415)
T COG5533 307 DVLIIHISRFHI------------SVMGRKKIDTP----QGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNGTLN 370 (415)
T ss_pred ceEEEEeeeeeE------------EeecccccCCC----cchhccCCceecccccccCCCCCCccceeEEEEEeecceec
Confidence 999999999973 23444455552 2222111 122467999999999999999
Q ss_pred CccEEEEEEeCCCCCEEEeeCCceeEcchHhHHHhhcCCCCCCCCCCCCCCCCCcccccCccEEEEEEEee
Q 003426 451 GGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRE 521 (821)
Q Consensus 451 ~GHY~ayir~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~ 521 (821)
+|||+++++. ++.|+.|||+.|++++...-. +..+||+|||.|.
T Consensus 371 gGHY~s~v~~--~~~W~~~dDs~vr~~~~~t~~-------------------------~~pSsYilFY~r~ 414 (415)
T COG5533 371 GGHYFSEVKR--SGTWNVYDDSQVRKGSRTTSG-------------------------SHPSSYILFYTRS 414 (415)
T ss_pred CceeEEeeee--cCceEEechhheeeccceecc-------------------------cCCcceEEEEEec
Confidence 9999999998 699999999999998633321 1248999999985
No 21
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2e-44 Score=376.49 Aligned_cols=211 Identities=34% Similarity=0.563 Sum_probs=192.6
Q ss_pred cccCCCcccchhhHHHHhhccHhHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhHHHhhCCCCCCcccc
Q 003426 198 GLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQ 277 (821)
Q Consensus 198 GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~~~~~~~~~Q 277 (821)
||.|.|||||+||+||+|++ .|
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~----------------------------------------------------------~Q 22 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA----------------------------------------------------------DQ 22 (230)
T ss_pred CccccCcchhhhHHHHHHHH----------------------------------------------------------hh
Confidence 89999999999999999998 79
Q ss_pred CcHHHHHHHHHHHHHHHhcCCcccccccccceeEEeeEEEEeccCceeeeeeeeeeEEEeeCCCC------CHHHHHHHh
Q 003426 278 HDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCR------DVYASFDKY 351 (821)
Q Consensus 278 ~Da~Ef~~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l~l~v~~~~------~l~esL~~~ 351 (821)
|||+||++.|++.|+ ..+.++|+|++.+.++|..|++.+.+.|+|+.|+|+++... +|+++|+.+
T Consensus 23 qDa~Ef~~~ll~~l~---------~~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l~l~ip~~~~~~~~~sl~~~L~~~ 93 (230)
T cd02674 23 QDAQEFLLFLLDGLH---------SIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGSGDAPKVTLEDCLRLF 93 (230)
T ss_pred hhHHHHHHHHHHHHh---------hhHHheeCCEEeCcEEcCCCcCCcceecceeEEEEecccccCCCCCCCHHHHHHHh
Confidence 999999999999998 36889999999999999999999999999999999998654 999999999
Q ss_pred hhhecccCCCccccccCC-eeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCc-cccCCccCCCCCCCCc
Q 003426 352 VEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPL-QLDLDRENGKYLSPDA 429 (821)
Q Consensus 352 ~~~E~l~g~n~y~c~~c~-~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~-~Ldl~~~~~~~l~~~~ 429 (821)
+.+|.++|.+++.|++|+ .+.+.++..|.++|++|+|||+||.++. +...|++..|+||. .+|+ .+|+.. .
T Consensus 94 ~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~--~~~~K~~~~v~~~~~~l~l----~~~~~~-~ 166 (230)
T cd02674 94 TKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSR--GSTRKLTTPVTFPLNDLDL----TPYVDT-R 166 (230)
T ss_pred cCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCC--CCcccCCceEecccccccc----ccccCc-c
Confidence 999999999999999996 5789999999999999999999999975 66799999999995 5899 666432 2
Q ss_pred CCCCCccEEEeEEEEEeecCCCccEEEEEEeCCCCCEEEeeCCceeEcchHhH
Q 003426 430 DRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRA 482 (821)
Q Consensus 430 ~~~~~~~Y~L~gVIvH~G~~~~GHY~ayir~~~~~~W~~fnD~~V~~v~~~~v 482 (821)
......+|+|+|||+|.|+.++|||+||+|...+++|++|||+.|++++.+++
T Consensus 167 ~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~ 219 (230)
T cd02674 167 SFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSV 219 (230)
T ss_pred cCCCCceEEEEEEEEeeCCCCCcEEEEEEECCCCCceEEEcCCeEEEcCHHHc
Confidence 33456789999999999977999999999997669999999999999999887
No 22
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-45 Score=398.00 Aligned_cols=297 Identities=30% Similarity=0.455 Sum_probs=253.9
Q ss_pred CCcccccccCCCcccchhhHHHHhhccHhHHHHHhcCCC------CCCCCCCCCHHHHHHHHHHHHhcCC-CcccchhHH
Q 003426 192 KETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPT------TENDLPSGSIPLALQSLFYKLQYND-TSVATKELT 264 (821)
Q Consensus 192 ~~~g~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~------~~~~~~~~~~~~~Lq~Lf~~l~~s~-~~v~~~~l~ 264 (821)
++.|.+||.|+||||||||.||||.|++.+|+++++-.. .+...-.+.++.+...|..++-..+ .++.|..+.
T Consensus 261 ke~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK 340 (823)
T COG5560 261 KEAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFK 340 (823)
T ss_pred hhccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHH
Confidence 556999999999999999999999999999999975221 1122223567778888887777654 789999999
Q ss_pred HhhCC--CCCCccccCcHHHHHHHHHHHHHHHhcC--------C------------------------ccccccccccee
Q 003426 265 KSFGW--DTYDSFMQHDVQELNRVLCEKLEDKMKG--------T------------------------VVEGTIQQLFEG 310 (821)
Q Consensus 265 ~~~~~--~~~~~~~Q~Da~Ef~~~Lld~Le~~~~~--------~------------------------~~~~~i~~lF~g 310 (821)
.++|. ..|.++.|||.|||+.+|||.|++.++. . ...+.|.+||.|
T Consensus 341 ~tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqg 420 (823)
T COG5560 341 KTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQG 420 (823)
T ss_pred HHHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 99984 6788999999999999999999999861 0 145689999999
Q ss_pred EEeeEEEEeccCceeeeeeeeeeEEEeeCCCC---------------C--------------------------------
Q 003426 311 HHMNYIECINVDYKSTRKESFYDLQLDVKGCR---------------D-------------------------------- 343 (821)
Q Consensus 311 ~~~~~i~C~~c~~~s~~~e~f~~l~l~v~~~~---------------~-------------------------------- 343 (821)
.+++...|..|+.+|...+||.+|+||++-.. +
T Consensus 421 myKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~gk~gc~ei~ 500 (823)
T COG5560 421 MYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGKLGCFEIK 500 (823)
T ss_pred HhhceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHhccCCcccee
Confidence 99999999999999999999999999987110 0
Q ss_pred --------------------------------------------------------------------------------
Q 003426 344 -------------------------------------------------------------------------------- 343 (821)
Q Consensus 344 -------------------------------------------------------------------------------- 343 (821)
T Consensus 501 v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~~~i~~kLvk 580 (823)
T COG5560 501 VMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIKASIYDKLVK 580 (823)
T ss_pred EEEEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecchhhHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 003426 344 -------------------------------------------------------------------------------- 343 (821)
Q Consensus 344 -------------------------------------------------------------------------------- 343 (821)
T Consensus 581 E~~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~~lFsy~ 660 (823)
T COG5560 581 EFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSYD 660 (823)
T ss_pred HHHHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeeccccchhhhhcCC
Confidence
Q ss_pred ----------------HHHHHHHhhhhecccCCCccccccCC-eeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccC
Q 003426 344 ----------------VYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKIN 406 (821)
Q Consensus 344 ----------------l~esL~~~~~~E~l~g~n~y~c~~c~-~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~ 406 (821)
|++||..|.++|.|.-...|+|+.|+ ...|.|++.++++|.+|+||||||+++ +....||.
T Consensus 661 ~lw~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~--rsfrdKid 738 (823)
T COG5560 661 PLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSV--RSFRDKID 738 (823)
T ss_pred ccchhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhc--ccchhhhh
Confidence 78999999999999999999999995 678999999999999999999999975 45678999
Q ss_pred ceEeCCcc-ccCCccCCCCCCCCcCCCCCccEEEeEEEEEeecCCCccEEEEEEeCCCCCEEEeeCCceeEcchHhHHHh
Q 003426 407 DRYEFPLQ-LDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEE 485 (821)
Q Consensus 407 ~~v~fP~~-Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVIvH~G~~~~GHY~ayir~~~~~~W~~fnD~~V~~v~~~~v~~~ 485 (821)
+-|+||.. |||+.+...+.+ ..-.|+|+||=.|.|...+|||+||+|+..+++||+|||++|+++.+++.+.
T Consensus 739 dlVeyPiddldLs~~~~~~~~------p~liydlyavDNHygglsgGHYtAyarn~~n~~wy~fdDsritevdped~vt- 811 (823)
T COG5560 739 DLVEYPIDDLDLSGVEYMVDD------PRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVT- 811 (823)
T ss_pred hhhccccccccccceEEeecC------cceEEEeeeccccccccCCcceeeeeecccCCceEEecCccccccCcccccc-
Confidence 99999988 999655444422 2378999999999999999999999999989999999999999999888654
Q ss_pred hcCCCCCCCCCCCCCCCCCcccccCccEEEEEEEeec
Q 003426 486 QYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRES 522 (821)
Q Consensus 486 ~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~ 522 (821)
.+||+|||+|++
T Consensus 812 -------------------------ssaYvLFyrrk~ 823 (823)
T COG5560 812 -------------------------SSAYVLFYRRKS 823 (823)
T ss_pred -------------------------ceeEEEEEEecC
Confidence 589999999974
No 23
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=100.00 E-value=7e-43 Score=365.40 Aligned_cols=189 Identities=36% Similarity=0.675 Sum_probs=144.2
Q ss_pred ceEEEEEeecCCCCCCCCCCCCCcchhchHHHHHhhhccccccceeEEEEeecCCCCCCCCCCCCCCCcEEEEEEeecCC
Q 003426 621 LQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEFGPDLHPIAPPDKSKDDILLFFKLYDPE 700 (821)
Q Consensus 621 ~~r~w~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~flK~fd~~ 700 (821)
++|||.|.+|+|+|.||+.|+.+.+.++||+++...... ..++++||||+..+.......++...+++||||||||||.
T Consensus 1 ~~RlW~~~~R~N~T~Rp~~p~~~~~~~~tl~~~~~~~~~-~~~~~~lflE~~~~~~~~~~~~~~~~~~~iLlFlK~fDp~ 79 (249)
T PF12436_consen 1 RFRLWRMVNRQNKTLRPDTPLPEEDEDMTLEEVRNKDSN-KQSELRLFLEEASPNSPSEPLPPYDPSDDILLFLKYFDPE 79 (249)
T ss_dssp GEEEEEEEE-CTTBEEE----CCHHCTSBCHHHHTS--S----SEEEEEEE--HHTTT-------TTTEEEEEEEEEETT
T ss_pred CEEEEEEECCCCCCCCCCCcCCcccccccHHHHhhcccc-cccccEEEEeccCcccccccCCCCCCCCcEEEEEEeeCCC
Confidence 589999999999999999999988999999999876544 4568999999975322222245667788999999999999
Q ss_pred CCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEEEeCCCCC
Q 003426 701 KGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSPPLE 780 (821)
Q Consensus 701 ~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~~~~~~ 780 (821)
+|+|+|+||++|+++++|++|+|.|+++||||+||+|.||||| +|++| ++|+++.||.++||+||||||||+..+++
T Consensus 80 ~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi--~~~~i-e~i~~~~t~~~~el~~GdIi~fQ~~~~~~ 156 (249)
T PF12436_consen 80 TQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEI--KPNMI-EPIDPNQTFEKAELQDGDIICFQRAPSED 156 (249)
T ss_dssp TTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEE--ETTEE-EE--SSSBHHHTT--TTEEEEEEE--GG-
T ss_pred CCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEe--cccee-eEcCCCCchhhcccCCCCEEEEEeccccc
Confidence 9999999999999999999999999999999999999999999 69998 99999999999999999999999998775
Q ss_pred CccCCCCCCHHHHHHHhhcceEEEEEeCccCCC
Q 003426 781 SEQECRYPDVPSFLEYVHNRQVQNMWKFSINSN 813 (821)
Q Consensus 781 ~~~~~~~~~v~~y~~~l~~r~~~~~~~~~~~~~ 813 (821)
...+..||||++||+||+|||+|+|++...+..
T Consensus 157 ~~~~~~~~~v~~Yy~~l~nrv~V~f~~~~~~~~ 189 (249)
T PF12436_consen 157 LDKSSRYPDVKEYYDFLYNRVEVEFKPKDNPND 189 (249)
T ss_dssp -GGGSSS-SHHHHHHHHHHEEEEEEEETTSTT-
T ss_pred cccccCCCCHHHHHHHHhCeEEEEEEECCCCCC
Confidence 667889999999999999999999999877655
No 24
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=8.9e-42 Score=362.35 Aligned_cols=245 Identities=33% Similarity=0.584 Sum_probs=202.6
Q ss_pred cccccCCCcccchhhHHHHhhccHhHHHHHhcC------CCCCCCCCCCCHHHHHHHHHHHHhcC---CCcccchhHHHh
Q 003426 196 YVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHM------PTTENDLPSGSIPLALQSLFYKLQYN---DTSVATKELTKS 266 (821)
Q Consensus 196 ~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~------~~~~~~~~~~~~~~~Lq~Lf~~l~~s---~~~v~~~~l~~~ 266 (821)
++||.|.||||||||+||+|+++|+||+++.+. ..........++..+|++||..|+.+ ...+.+..+...
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 589999999999999999999999999999976 22223333456999999999999987 477899999888
Q ss_pred hCC--CCCCccccCcHHHHHHHHHHHHHHHhcCCc-----------ccccccccceeEEeeEEEEeccCceeeeeeeeee
Q 003426 267 FGW--DTYDSFMQHDVQELNRVLCEKLEDKMKGTV-----------VEGTIQQLFEGHHMNYIECINVDYKSTRKESFYD 333 (821)
Q Consensus 267 ~~~--~~~~~~~Q~Da~Ef~~~Lld~Le~~~~~~~-----------~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~ 333 (821)
+++ ..+..+.||||+||+..|++.|++++.... ..+.+.++|.+++.+.+.|..|+..
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~c~~~--------- 151 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFESSIKCSSCKNS--------- 151 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEEEEEETTTTCE---------
T ss_pred ccccccccccccccchhhhhcccccccchhhcccccccccccccccccccccccccccccccccccccccc---------
Confidence 864 447789999999999999999999987642 4667889999999999999999876
Q ss_pred EEEeeCCCCCHHHHHHHhhhhecccCCCccccccCCeeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCC-
Q 003426 334 LQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFP- 412 (821)
Q Consensus 334 l~l~v~~~~~l~esL~~~~~~E~l~g~n~y~c~~c~~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP- 412 (821)
...|.++|++|+|+|+||.|+..++...|+.+.+.||
T Consensus 152 ------------------------------------------~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~ 189 (269)
T PF00443_consen 152 ------------------------------------------QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEFPL 189 (269)
T ss_dssp ------------------------------------------EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB--S
T ss_pred ------------------------------------------ccccccccceeeeccccceeccccccccccccccccCc
Confidence 5678899999999999999998888899999999999
Q ss_pred ccccCCccCCCCCCCCcC-CCCCccEEEeEEEEEeecCCCccEEEEEEeCCCCCEEEeeCCceeEcchHhHHHhhcCCCC
Q 003426 413 LQLDLDRENGKYLSPDAD-RSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEE 491 (821)
Q Consensus 413 ~~Ldl~~~~~~~l~~~~~-~~~~~~Y~L~gVIvH~G~~~~GHY~ayir~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~ 491 (821)
++||| .+++..+.. ......|+|+|||+|.|+.++|||+||+|...+++|++|||+.|++++.++|++.+
T Consensus 190 ~~l~l----~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~v~~~~~~~W~~~dD~~v~~~~~~~v~~~~----- 260 (269)
T PF00443_consen 190 EELDL----SPYLEKNNSECQSNVKYRLVAVIVHYGSADSGHYVAYVRDSDDGKWYKFDDSRVTEVSWEEVIKSS----- 260 (269)
T ss_dssp SEEEG----GGGBSSCCCTHTSSSEEEEEEEEEEESSTTSEEEEEEEEETTTTEEEEEETTEEEEESHHHHCCGG-----
T ss_pred hhhhh----hhhhccccccccccceeeehhhhccccccccceEEEeeccccCCeEEEeeCCceEECCHHHHhhcc-----
Confidence 79999 666655432 12457999999999999999999999999976667999999999999999986632
Q ss_pred CCCCCCCCCCCCCcccccCccEEEEEE
Q 003426 492 ELPPTNPGFNNTPFKFTKYSNAYMLVY 518 (821)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~AYmL~Y 518 (821)
..+||||||
T Consensus 261 ------------------~~~~yll~Y 269 (269)
T PF00443_consen 261 ------------------NSTAYLLFY 269 (269)
T ss_dssp ------------------STCEEEEEE
T ss_pred ------------------CCceEEEeC
Confidence 258999999
No 25
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.1e-40 Score=346.54 Aligned_cols=230 Identities=21% Similarity=0.310 Sum_probs=185.1
Q ss_pred ccCCCcccchhhHHHHhhccHhHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhHHHhhCCCCCCccccC
Q 003426 199 LKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQH 278 (821)
Q Consensus 199 L~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~~~~~~~~~Q~ 278 (821)
|.|.||.||+||.+|+|..+... .+.|..++||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~-----------------------------------------------~~~F~~~~QQ 34 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSSIGKI-----------------------------------------------NTEFDNDDQQ 34 (245)
T ss_pred ceecCCeeeehhHHHHHHHHhhh-----------------------------------------------hhhcCCCchh
Confidence 78999999999999998543221 1346788999
Q ss_pred cHHHHHHHHHHHHHHHhcCCc----------ccccccccceeEEeeEEEEeccCceeeeeeeeeeEEEeeCCC--CCHHH
Q 003426 279 DVQELNRVLCEKLEDKMKGTV----------VEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGC--RDVYA 346 (821)
Q Consensus 279 Da~Ef~~~Lld~Le~~~~~~~----------~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l~l~v~~~--~~l~e 346 (821)
|||||++.|||.|++++++.. ......++|+|++.+.++|..|++++.+.|+|++|+|+++.. ..+++
T Consensus 35 DAhEFL~~LLd~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~l~s~i~C~~C~~~s~~~e~~~~L~L~i~~~~~~~le~ 114 (245)
T cd02673 35 DAHEFLLTLLEAIDDIMQVNRTNVPPSNIEIKRLNPLEAFKYTIESSYVCIGCSFEENVSDVGNFLDVSMIDNKLDIDEL 114 (245)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCHhHheeeEEEeEEEecCCCCeeeeccccceeccccccCCcchHHH
Confidence 999999999999998775431 111234789999999999999999999999999999999874 56777
Q ss_pred HHHHhhhhecccCCCccccccCCeeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCccccCCccCCCCCC
Q 003426 347 SFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLS 426 (821)
Q Consensus 347 sL~~~~~~E~l~g~n~y~c~~c~~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~ 426 (821)
++..+...+.++ |.|+.|+.+.|.++..|.++|++|+|||+||.++.......|++ .+++ .+|..
T Consensus 115 l~~~~~~~~~~e----~~C~~C~~~~a~k~~~i~~~P~vL~i~lkRf~~~~~~~~~~~~~-------~~~~----~~~~~ 179 (245)
T cd02673 115 LISNFKTWSPIE----KDCSSCKCESAISSERIMTFPECLSINLKRYKLRIATSDYLKKN-------EEIM----KKYCG 179 (245)
T ss_pred HHHHhhcccccC----ccCCCCCCccceeechhhhCChhhEEeeEeeeeccccccccccc-------cccc----ccccC
Confidence 788887766665 79999998889999999999999999999998764322222222 3456 45543
Q ss_pred CCcCCCCCccEEEeEEEEEee-cCCCccEEEEEEeCC-CCCEEEeeCCceeEcchHhHHHhhcCCCCCCCCCCCCCCCCC
Q 003426 427 PDADRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTL-SDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTP 504 (821)
Q Consensus 427 ~~~~~~~~~~Y~L~gVIvH~G-~~~~GHY~ayir~~~-~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~~~~ 504 (821)
....|+|+|||+|.| +.++|||+||+|... +++||+|||+.|++++.++|++..
T Consensus 180 ------~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~~------------------ 235 (245)
T cd02673 180 ------TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTNA------------------ 235 (245)
T ss_pred ------CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhcc------------------
Confidence 346799999999999 489999999999875 689999999999999999997420
Q ss_pred cccccCccEEEEEEE
Q 003426 505 FKFTKYSNAYMLVYI 519 (821)
Q Consensus 505 ~~~~~~~~AYmL~Y~ 519 (821)
..+||||||+
T Consensus 236 -----~~~aYiLFY~ 245 (245)
T cd02673 236 -----RSSGYLIFYD 245 (245)
T ss_pred -----CCceEEEEEC
Confidence 1589999995
No 26
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-40 Score=361.03 Aligned_cols=221 Identities=24% Similarity=0.363 Sum_probs=190.1
Q ss_pred CCcccccccCCCcccchhhHHHHhhccHhHHHHHhcCCC---CCCCCCCCCHHHHHHHHHHHHhcCC-----------Cc
Q 003426 192 KETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPT---TENDLPSGSIPLALQSLFYKLQYND-----------TS 257 (821)
Q Consensus 192 ~~~g~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~---~~~~~~~~~~~~~Lq~Lf~~l~~s~-----------~~ 257 (821)
-.+||+||+|+||+|||||++|+|+.+|.|......... .....|..++-++|.+|...|.... ..
T Consensus 303 ~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qng 382 (763)
T KOG0944|consen 303 FGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQNG 382 (763)
T ss_pred cCCCccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccccCC
Confidence 467999999999999999999999999999887765421 1235667789999999999998743 24
Q ss_pred ccchhHHHhhCC--CCCCccccCcHHHHHHHHHHHHHHHhcCCcccccccccceeEEeeEEEEeccCceeeeeeeeeeEE
Q 003426 258 VATKELTKSFGW--DTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQ 335 (821)
Q Consensus 258 v~~~~l~~~~~~--~~~~~~~Q~Da~Ef~~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l~ 335 (821)
++|..|....|. +.|..++||||+||+..||+.|++...... ..+.++|...+..++.|..|...+...+.-+.|+
T Consensus 383 IsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs~~--~nptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i~ 460 (763)
T KOG0944|consen 383 ISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRSSL--PNPTDLFRFEVEDRVSCLGCRKVRYSYESEYLIQ 460 (763)
T ss_pred cCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhcccccC--CCHHHHHHhhhhhhhhhhccccccccchhheeeE
Confidence 678888887764 678999999999999999999987655432 6788999999999999999999999999999999
Q ss_pred EeeCCC------CCHHHHHHHhhhhecccCCCccccccCC-eeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCce
Q 003426 336 LDVKGC------RDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDR 408 (821)
Q Consensus 336 l~v~~~------~~l~esL~~~~~~E~l~g~n~y~c~~c~-~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~ 408 (821)
|+|+.. .++.++|+.|+.+.+.+ |.|..|| +..|.|+..|++||++|+||++||.| .....+|+...
T Consensus 461 lpv~~~~~v~~~v~~~~cleaff~pq~~d----f~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~--~dw~pkKld~~ 534 (763)
T KOG0944|consen 461 LPVPMTNEVREKVPISACLEAFFEPQVDD----FWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTL--QDWVPKKLDVS 534 (763)
T ss_pred eeccccccccccCCHHHHHHHhcCCcchh----hhhHhhcCccccccccccccCCceEEEEeeEEEe--cCceeeeeccc
Confidence 999853 38999999999995555 8899996 77899999999999999999999999 57888999999
Q ss_pred EeCCccccCCcc
Q 003426 409 YEFPLQLDLDRE 420 (821)
Q Consensus 409 v~fP~~Ldl~~~ 420 (821)
++.|++||++.|
T Consensus 535 iempe~ldls~~ 546 (763)
T KOG0944|consen 535 IEMPEELDLSSY 546 (763)
T ss_pred eecchhhchhhh
Confidence 999999999754
No 27
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-40 Score=380.03 Aligned_cols=303 Identities=27% Similarity=0.461 Sum_probs=244.5
Q ss_pred CCCCcccccccCCCcccchhhHHHHhhccHhHHHHHhcCCC----C-CCCCCCCCHHHHHHHHHHHHhcC--CCcccchh
Q 003426 190 SKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPT----T-ENDLPSGSIPLALQSLFYKLQYN--DTSVATKE 262 (821)
Q Consensus 190 sk~~~g~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~----~-~~~~~~~~~~~~Lq~Lf~~l~~s--~~~v~~~~ 262 (821)
.....|.+||.|+|||||||++||||+.++.||...++... . ........+..+...++..+... ..++.|..
T Consensus 295 ~~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~ 374 (653)
T KOG1868|consen 295 STDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLPRR 374 (653)
T ss_pred cccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCcHH
Confidence 45567889999999999999999999999999955543210 0 12222335666777777666664 35788999
Q ss_pred HHHhhC--CCCCCccccCcHHHHHHHHHHHHHHHhcCCc-----------------------------------cccccc
Q 003426 263 LTKSFG--WDTYDSFMQHDVQELNRVLCEKLEDKMKGTV-----------------------------------VEGTIQ 305 (821)
Q Consensus 263 l~~~~~--~~~~~~~~Q~Da~Ef~~~Lld~Le~~~~~~~-----------------------------------~~~~i~ 305 (821)
|...++ ...+....|||+|||+..+++.|++++.... ....|.
T Consensus 375 f~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~ 454 (653)
T KOG1868|consen 375 FIRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIG 454 (653)
T ss_pred HHHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHH
Confidence 999887 3556667899999999999999999886421 122378
Q ss_pred ccceeEEeeEEEEeccCceeeeeeeeeeEEEeeCCC------CCHHHHHHHhhhhecccCCCccccccCCeeeee---ee
Q 003426 306 QLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGC------RDVYASFDKYVEVERLEGDNKYHAEEHGLQDAK---KG 376 (821)
Q Consensus 306 ~lF~g~~~~~i~C~~c~~~s~~~e~f~~l~l~v~~~------~~l~esL~~~~~~E~l~g~n~y~c~~c~~~~a~---k~ 376 (821)
++|.|++++.++|..|++.+.+.++|++++|+|+.. .+|.+|+..|+..|.++|++.|.|+.|++.... |.
T Consensus 455 ~lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~~~~lK~ 534 (653)
T KOG1868|consen 455 DLFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKESSKTLKK 534 (653)
T ss_pred HHHHHHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhccccchhhcccccccCCccccCcccccccce
Confidence 999999999999999999999999999999999742 359999999999999999999999999865444 89
Q ss_pred EEEecCCCeeEEEEEEEEEcccccceeccCceEeCCcc-ccCCccCCCCCCCCcCCCCCccEEEeEEEEEeecCCCccEE
Q 003426 377 VLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQ-LDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYY 455 (821)
Q Consensus 377 ~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~-Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVIvH~G~~~~GHY~ 455 (821)
..|.+||++|++||+||.+|. +...|....++||.. .++ .++..... .....|+|+|||+|.|+.++|||+
T Consensus 535 ~~i~~lp~iLiihL~Rf~~~~--~~~~k~~~~v~~~~~~~~~----~~~~~~~~--~~~~~Y~L~aVv~H~Gtl~sGHYt 606 (653)
T KOG1868|consen 535 LTILRLPKILIIHLKRFSSDG--NSFNKLSTGVDFPLREADL----SPRFAEKG--NNPKSYRLYAVVNHSGTLNSGHYT 606 (653)
T ss_pred eeeecCCHHHHHHHHHhccCc--ccccccceeeccchHhhhh----chhccccC--CCccceeeEEEEeccCcccCCceE
Confidence 999999999999999999874 456889999999987 445 44433332 234559999999999999999999
Q ss_pred EEEEeCCCCCEEEeeCCceeEcchHhHHHhhcCCCCCCCCCCCCCCCCCcccccCccEEEEEEEeeccccc
Q 003426 456 AFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRESDKDK 526 (821)
Q Consensus 456 ayir~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~~~~~ 526 (821)
||++....+.|+.|||+.|+.++..++- .+.||+|||.|.+..++
T Consensus 607 a~~~~~~~~~W~~fdDs~Vs~~~~~~~~--------------------------~s~aYIlFY~~~~~~~~ 651 (653)
T KOG1868|consen 607 AYVYKNEKQRWFTFDDSEVSPISETDVG--------------------------SSSAYILFYERLGIFEE 651 (653)
T ss_pred EEEeecCCCceEEecCeeeecccccccc--------------------------CCCceEEEeecCCcccc
Confidence 9999977889999999999977655541 25899999999876443
No 28
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.5e-38 Score=331.52 Aligned_cols=238 Identities=36% Similarity=0.603 Sum_probs=201.0
Q ss_pred cccCCCcccchhhHHHHhhccHhHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhHHHhhCCCCCCcccc
Q 003426 198 GLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQ 277 (821)
Q Consensus 198 GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~~~~~~~~~Q 277 (821)
||.|.||+||+||+||+|++ .|
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~----------------------------------------------------------~q 22 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS----------------------------------------------------------EQ 22 (255)
T ss_pred CccccCcchHHhHHHHHHHH----------------------------------------------------------HH
Confidence 89999999999999999999 79
Q ss_pred CcHHHHHHHHHHHHHHHhcC--------CcccccccccceeEEeeEEEEeccCceeeeeeeeeeEEEeeCC----CCCHH
Q 003426 278 HDVQELNRVLCEKLEDKMKG--------TVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKG----CRDVY 345 (821)
Q Consensus 278 ~Da~Ef~~~Lld~Le~~~~~--------~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l~l~v~~----~~~l~ 345 (821)
|||+||+..+++.|+.++.. ......+.++|.|++...+.|..|+..+.....+..++|+++. ..+|+
T Consensus 23 ~Da~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~l~~~~~~~~~~~l~ 102 (255)
T cd02257 23 QDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPLPVKGLPQVSLE 102 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEEeeccCCCCCCCcHH
Confidence 99999999999999999876 3456789999999999999999998877776667677777664 47999
Q ss_pred HHHHHhhhhecccCCCccccccCCeeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCccccCCccCCCCC
Q 003426 346 ASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYL 425 (821)
Q Consensus 346 esL~~~~~~E~l~g~n~y~c~~c~~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l 425 (821)
++|+.++..+.+++.++..|..+..+.+.++..|.++|++|+|+|+||.++.. ....|++..+.||.++++ ..++
T Consensus 103 ~~l~~~~~~e~~~~~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~-~~~~k~~~~v~~~~~l~~----~~~~ 177 (255)
T cd02257 103 DCLEKFFKEEILEGDNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNED-GTKEKLNTKVSFPLELDL----SPYL 177 (255)
T ss_pred HHHHHhhhhhccCCCCcccCCCCcccceeEEEecccCCceeEEEeeceeeccc-cccccCCCeEeCCCcccC----cccc
Confidence 99999999999988544333332367889999999999999999999998753 667899999999999999 5554
Q ss_pred C----CCcCCCCCccEEEeEEEEEeecC-CCccEEEEEEeCCCCCEEEeeCCceeEcchHhHHHhhcCCCCCCCCCCCCC
Q 003426 426 S----PDADRSVRNLYTLHSVLVHSGGV-HGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGF 500 (821)
Q Consensus 426 ~----~~~~~~~~~~Y~L~gVIvH~G~~-~~GHY~ayir~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~ 500 (821)
. ..........|+|+|||+|.|+. ++|||+||+|...+++||+|||..|++++.+++... ++
T Consensus 178 ~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~--~~----------- 244 (255)
T cd02257 178 SEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEF--GS----------- 244 (255)
T ss_pred ccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhc--cC-----------
Confidence 3 23334456789999999999964 999999999997669999999999999999998652 11
Q ss_pred CCCCcccccCccEEEEEEE
Q 003426 501 NNTPFKFTKYSNAYMLVYI 519 (821)
Q Consensus 501 ~~~~~~~~~~~~AYmL~Y~ 519 (821)
...+||||||+
T Consensus 245 --------~~~~~yll~Y~ 255 (255)
T cd02257 245 --------LSSSAYILFYE 255 (255)
T ss_pred --------CCCceEEEEEC
Confidence 12589999995
No 29
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-38 Score=354.18 Aligned_cols=298 Identities=31% Similarity=0.482 Sum_probs=252.6
Q ss_pred CCcccccccCCCcccchhhHHHHhhccHhHHHHHhcCCCC-CCCCC-CCCHHHHHHHHHHHHhcCC--CcccchhHHHhh
Q 003426 192 KETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTT-ENDLP-SGSIPLALQSLFYKLQYND--TSVATKELTKSF 267 (821)
Q Consensus 192 ~~~g~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~-~~~~~-~~~~~~~Lq~Lf~~l~~s~--~~v~~~~l~~~~ 267 (821)
-..|++||.|+|+||+||++||+|.+.+..+...+..... +...+ ..++.+++.++|..++... .++.+..+....
T Consensus 157 ~~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l~~~ 236 (492)
T KOG1867|consen 157 TALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFELLNLV 236 (492)
T ss_pred eeecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCCCCCCcChHHHHHHH
Confidence 4567899999999999999999999888887766543222 22333 5689999999999999865 567777776654
Q ss_pred C--CCCCCccccCcHHHHHHHHHHHHHHHhc--------CC---cccccccccceeEEeeEEEEeccCceeeeeeeeeeE
Q 003426 268 G--WDTYDSFMQHDVQELNRVLCEKLEDKMK--------GT---VVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDL 334 (821)
Q Consensus 268 ~--~~~~~~~~Q~Da~Ef~~~Lld~Le~~~~--------~~---~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l 334 (821)
- -+.+.++.|||++||+..+++.++...+ .. ...+++...|.|.+.+.+.|..|+..|...++|++|
T Consensus 237 ~k~~~~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~~~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~~S~~~dpf~di 316 (492)
T KOG1867|consen 237 WKHSPNLAGYEQQDAHEFLIALLDRLHREKDDCGKSLIASQSNKQCPCIVHTIFSGTLQSDVTCQTCGSKSTTYDPFMDI 316 (492)
T ss_pred HHhCcccccccccchHHHHHHhcccccccccccccccccccCCcccccccceeecceeccceeehhhcceeeeccCccce
Confidence 1 1456679999999999999999988771 11 236789999999999999999999999999999999
Q ss_pred EEeeCCC----------CCHHHHHHHhhhhecccCCCccccccCC-eeeeeeeEEEecCCCeeEEEEEEEEEccccccee
Q 003426 335 QLDVKGC----------RDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMV 403 (821)
Q Consensus 335 ~l~v~~~----------~~l~esL~~~~~~E~l~g~n~y~c~~c~-~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~ 403 (821)
+|+++.. .++.+++..+...+.+....++.|..|+ ++.+.|+..+.++|.+|.+||+||++.......
T Consensus 317 sL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~- 395 (492)
T KOG1867|consen 317 SLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGARE- 395 (492)
T ss_pred eeecchhccCcccccchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceeeeeecccccccccccc-
Confidence 9999743 5689999999999999889999999997 679999999999999999999999987654444
Q ss_pred ccCceEeCCccccCCccCCCCCCCCcC---CCCCccEEEeEEEEEeecCCCccEEEEEEeCCCCCEEEeeCCceeEcchH
Q 003426 404 KINDRYEFPLQLDLDRENGKYLSPDAD---RSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVK 480 (821)
Q Consensus 404 Ki~~~v~fP~~Ldl~~~~~~~l~~~~~---~~~~~~Y~L~gVIvH~G~~~~GHY~ayir~~~~~~W~~fnD~~V~~v~~~ 480 (821)
|+.+.+.||..|+| .+|+..+.. ...+..|+|.|||+|+|+.++|||+||.|. .+.|++|||+.|+.++.+
T Consensus 396 ki~~~v~fp~~l~m----~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~~~SGHY~aY~r~--~~~~~~~dDs~v~~~s~~ 469 (492)
T KOG1867|consen 396 KIDSYVSFPVLLNM----KPYCSSEKLKSQDNPDHLYELRAVVVHHGTVGSGHYVAYRRQ--SGGWFKCDDSTVTKVSEE 469 (492)
T ss_pred ccCcccccchhhcC----CccccccccccCCCCCceEEEEEEEEeccCCCCCceEEEEEe--CCCcEEEcCeEEEEeeHH
Confidence 99999999999999 777765322 245689999999999999999999999999 789999999999999999
Q ss_pred hHHHhhcCCCCCCCCCCCCCCCCCcccccCccEEEEEEEeec
Q 003426 481 RALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRES 522 (821)
Q Consensus 481 ~v~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~ 522 (821)
+|++ +.||+|||.+..
T Consensus 470 eVl~--------------------------~~aylLFY~~~~ 485 (492)
T KOG1867|consen 470 EVLS--------------------------SQAYLLFYTQEQ 485 (492)
T ss_pred Hhhh--------------------------chhhheehhHHh
Confidence 9976 589999998754
No 30
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2e-36 Score=320.84 Aligned_cols=237 Identities=20% Similarity=0.261 Sum_probs=193.3
Q ss_pred cccccCCCCcccccccCCCcccchhhHHHHhhccHhHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhHH
Q 003426 185 YWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELT 264 (821)
Q Consensus 185 ~~~~~sk~~~g~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~ 264 (821)
.++++..+.|+|+||.|.|+|||+||+||+|+++|+||+++.... .......+++++|+.||. .
T Consensus 4 ~fdf~~~n~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~~~~--~~~~~~~~l~~el~~lfs------------~-- 67 (268)
T cd02672 4 DFDFEFYNKTNYAGLENHITNSYCNSLLQLLYFIPPFRNFTAIIL--VACPKESCLLCELGYLFS------------T-- 67 (268)
T ss_pred cccccccccccccccccCCccchHHHHHHHHHhcHHHHHHHHhhc--ccCCcCccHHHHHHHHHH------------H--
Confidence 356777889999999999999999999999999999999854432 334456799999999991 1
Q ss_pred HhhCCCCCCccccCcHHHHHHHHHHHHHHHhcCCcccccccccceeEEeeEEEEeccCceeeeeeeeeeEEEeeCCC---
Q 003426 265 KSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGC--- 341 (821)
Q Consensus 265 ~~~~~~~~~~~~Q~Da~Ef~~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l~l~v~~~--- 341 (821)
=+|-|.+.|++.+..+..++. ..|++.+.+.+++++|+|+++..
T Consensus 68 --------------~iq~F~~fll~~i~~~~~~~~-------------------~~C~~~s~~~~~~~~LsLpip~~~~~ 114 (268)
T cd02672 68 --------------LIQNFTRFLLETISQDQLGTP-------------------FSCGTSRNSVSLLYTLSLPLGSTKTS 114 (268)
T ss_pred --------------HHHHHHHHHHHHHHHHhcccC-------------------CCCCceeeccccceeeeeecCccccc
Confidence 135688899998876543321 67899999999999999999853
Q ss_pred --CCHHHHHHHhhhhecccCCCccccccCC-eeeeeeeEEEecCCC----eeEEEEEEEEEcccc-----cceeccCceE
Q 003426 342 --RDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPP----VLQLQLKRFEYDFMR-----DAMVKINDRY 409 (821)
Q Consensus 342 --~~l~esL~~~~~~E~l~g~n~y~c~~c~-~~~a~k~~~~~~lP~----vL~i~L~Rf~~d~~~-----~~~~Ki~~~v 409 (821)
.++.++|+.+++.|.. +++.|+.|+ ++.|.++..|+++|+ ||+||||||.++... ....|++..+
T Consensus 115 ~~~sl~~cL~~~~~~E~~---~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v 191 (268)
T cd02672 115 KESTFLQLLKRSLDLEKV---TKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKV 191 (268)
T ss_pred cCCCHHHHHHHHhhhhhc---ccccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCee
Confidence 4999999999998854 568999996 689999999999999 999999999875432 2356888999
Q ss_pred eCCccccCCccCCCCCCCCcCCCCCccEEEeEEEEEeec-CCCccEEEEEEeCC----CCCEEEeeCCceeEcch
Q 003426 410 EFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGG-VHGGHYYAFIRPTL----SDQWYKFDDERVTKEDV 479 (821)
Q Consensus 410 ~fP~~Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVIvH~G~-~~~GHY~ayir~~~----~~~W~~fnD~~V~~v~~ 479 (821)
.||...++ ..+.... .....+|+|+|||+|.|+ .++|||+||||... .++||.|||..|++++.
T Consensus 192 ~f~~~~~~----~~~~~~~--~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs~ 260 (268)
T cd02672 192 SPKAIDHD----KLVKNRG--QESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVSE 260 (268)
T ss_pred cccccccc----hhhhccC--CCCCceEEEEEEEEEecCCCCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcCc
Confidence 99998877 4443332 234578999999999996 49999999999854 57999999999999964
No 31
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-34 Score=307.33 Aligned_cols=219 Identities=21% Similarity=0.311 Sum_probs=181.1
Q ss_pred cccccCCCcccchhhHHHHhhccHhHHHHHhcCCC---CCCCCCCCCHHHHHHHHHHHHhcCC-----CcccchhHHHhh
Q 003426 196 YVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPT---TENDLPSGSIPLALQSLFYKLQYND-----TSVATKELTKSF 267 (821)
Q Consensus 196 ~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~---~~~~~~~~~~~~~Lq~Lf~~l~~s~-----~~v~~~~l~~~~ 267 (821)
++||.|+||+||+||++|+|+....+..-+..+.. ..-..|..++.++|.+|...|.... ..+.|..|...+
T Consensus 303 ~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~~i 382 (749)
T COG5207 303 YVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFKMLI 382 (749)
T ss_pred ccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHHHHHhhccCCCCccccCCcChhhHHHHH
Confidence 89999999999999999999998877654432221 1234566789999999999887643 347888888888
Q ss_pred CC--CCCCccccCcHHHHHHHHHHHHHHHhcCCcccccccccceeEEeeEEEEeccCceeeeeeeeeeEEEeeCCC---C
Q 003426 268 GW--DTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGC---R 342 (821)
Q Consensus 268 ~~--~~~~~~~Q~Da~Ef~~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l~l~v~~~---~ 342 (821)
|. ..|..++||||+||+.+||+.|..... +.....|.++|...+.....|..|+..+...++...+++...+. .
T Consensus 383 gq~h~eFg~~~QQDA~EFLlfLL~kirk~~~-S~~~~~It~lf~Fe~e~rlsC~~C~~v~ySye~~~~i~i~le~n~E~~ 461 (749)
T COG5207 383 GQDHPEFGKFAQQDAHEFLLFLLEKIRKGER-SYLIPPITSLFEFEVERRLSCSGCMDVSYSYESMLMICIFLEGNDEPQ 461 (749)
T ss_pred cCCchhhhhhhhhhHHHHHHHHHHHHhhccc-hhcCCCcchhhhhhhcceecccccccccccccceEEEEeecccCcchh
Confidence 74 568889999999999999999986543 33456788999999999999999999999999999999998765 4
Q ss_pred CHHHHHHHhhhhecccCCCccccccCC-eeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCcc--ccCCc
Q 003426 343 DVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQ--LDLDR 419 (821)
Q Consensus 343 ~l~esL~~~~~~E~l~g~n~y~c~~c~-~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~--Ldl~~ 419 (821)
++.++++.|+.+..++ |.|+.|+ +..|.+..-|++||++|++|..||.+. .....|+.+.+.+... +++++
T Consensus 462 di~~~v~a~f~pdtiE----~~CenCk~K~~a~~k~~~kslPk~LIlq~~R~~lq--ny~v~kls~pi~~~~D~m~~~~s 535 (749)
T COG5207 462 DIRKSVEAFFLPDTIE----WSCENCKGKKKASRKPFIKSLPKYLILQVGRYSLQ--NYKVEKLSDPIEMRSDDMIKLGS 535 (749)
T ss_pred hHHHHHHheECcccee----eehhhhcCcccccccchhhccCceeEEecceeecc--ceeehhccCceEEccccccchhh
Confidence 7999999999999998 9999994 788999999999999999999999863 5567788877776553 66655
Q ss_pred cC
Q 003426 420 EN 421 (821)
Q Consensus 420 ~~ 421 (821)
|+
T Consensus 536 ~m 537 (749)
T COG5207 536 FM 537 (749)
T ss_pred Hh
Confidence 43
No 32
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-36 Score=332.54 Aligned_cols=149 Identities=36% Similarity=0.515 Sum_probs=123.8
Q ss_pred HHHHHHHhhhhecccCCCccccccCCe----e------------------------eeeeeEEEecCCCeeEEEEEEEEE
Q 003426 344 VYASFDKYVEVERLEGDNKYHAEEHGL----Q------------------------DAKKGVLFIDFPPVLQLQLKRFEY 395 (821)
Q Consensus 344 l~esL~~~~~~E~l~g~n~y~c~~c~~----~------------------------~a~k~~~~~~lP~vL~i~L~Rf~~ 395 (821)
++.||.+|+..|+|.|+|++.|+.|.+ + -|++.+.|..+||||+||||||.-
T Consensus 680 vq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlKrf~q 759 (877)
T KOG1873|consen 680 VQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKRFFQ 759 (877)
T ss_pred HHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHhhhhh
Confidence 788999999999999999999999943 1 135667788899999999999987
Q ss_pred cccccceeccCceEeCCccccCCccCCCCCCCCcCCCCCccEEEeEEEEEeecCCCccEEEEEEeC--------------
Q 003426 396 DFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPT-------------- 461 (821)
Q Consensus 396 d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVIvH~G~~~~GHY~ayir~~-------------- 461 (821)
+. .+...|+++.+.|++.+||..|+.--++.... .....|+|.|||.|+|+.+.|||+||+|..
T Consensus 760 ~~-~~~~~k~~~h~~f~E~~dL~~~~~~rc~~l~~-~~s~~Yrl~gvvehsgtm~~ghyvayv~~~t~~~~~~~~~~~~~ 837 (877)
T KOG1873|consen 760 DI-RGRLSKLNKHVDFKEFEDLLDYMDFRCSHLDE-PSSFVYRLAGVVEHSGTMSYGHYVAYVRGGTFLDLSAPSNSKDF 837 (877)
T ss_pred hh-hchhhcccccchHHHHHHHHHHhhhhccccCC-cchhhhhhccceeccccccCCcchhhhhccchhhccCccccccc
Confidence 64 45589999999999999994443222222222 246789999999999999999999999942
Q ss_pred ------CCCCEEEeeCCceeEcchHhHHHhhcCCCCCCCCCCCCCCCCCcccccCccEEEEEEEe
Q 003426 462 ------LSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIR 520 (821)
Q Consensus 462 ------~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R 520 (821)
..|+||...|..|.++++++|+. ..||||||+|
T Consensus 838 ~sd~~~~~~~Wy~iSDs~VrevS~d~vLk--------------------------seAYlLFYER 876 (877)
T KOG1873|consen 838 ESDAGIPSGRWYYISDSIVREVSLDEVLK--------------------------SEAYLLFYER 876 (877)
T ss_pred hhccCCCCcceEEecchheecccHHHHhh--------------------------hhhhhhheec
Confidence 24689999999999999999987 5899999998
No 33
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.97 E-value=4.8e-31 Score=285.82 Aligned_cols=266 Identities=25% Similarity=0.339 Sum_probs=226.8
Q ss_pred ccccCCCcccchhhHHHHhhccHhHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHh-cCC-CcccchhHHHhhCCC--CC
Q 003426 197 VGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQ-YND-TSVATKELTKSFGWD--TY 272 (821)
Q Consensus 197 ~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~-~s~-~~v~~~~l~~~~~~~--~~ 272 (821)
+||.|.+++||+||+||+||++|++|+.+++.. ++....|++++|.-||.+|. .+. ....+.+|.++|++. ..
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~---~c~~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~~~~a~ 77 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL---ECPKEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSWIPEAA 77 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc---CCCccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhcCHHHH
Confidence 599999999999999999999999999998865 25567799999999999999 654 567888999999875 34
Q ss_pred CccccCcHHHHHHHHHHHHHHHhcCCcc-------------cccccccceeEEeeEEEEeccCceeeeeeeeeeEEEeeC
Q 003426 273 DSFMQHDVQELNRVLCEKLEDKMKGTVV-------------EGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVK 339 (821)
Q Consensus 273 ~~~~Q~Da~Ef~~~Lld~Le~~~~~~~~-------------~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l~l~v~ 339 (821)
..+.|+|+++|+++|++.|+.++..... ...|.++|+......++|..|+.++.+.+....+.|..+
T Consensus 78 ~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~~~~~~~~~~~l~yp 157 (295)
T PF13423_consen 78 ALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFETTIRCTSCGHESVKESSTLVLDLPYP 157 (295)
T ss_pred hcchhHHHHHHHHHHHHHHhHHHHhcCcccccccccccCCCcchHHHHhCcceeeeecccccCCeEEeecceeeeeccCC
Confidence 4567999999999999999988865443 567899999999999999999999999999888888776
Q ss_pred C---CCCHHHHHHHhhhhecccCCCccccccCCe-eeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCccc
Q 003426 340 G---CRDVYASFDKYVEVERLEGDNKYHAEEHGL-QDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQL 415 (821)
Q Consensus 340 ~---~~~l~esL~~~~~~E~l~g~n~y~c~~c~~-~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~L 415 (821)
. ..++.+.|+.++..|...+ ..|++|++ +.+..+..|.++|+||.|.++|...+ .....|....+.+|..+
T Consensus 158 ~~~~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~--~~w~~~~~~~~~ip~~i 232 (295)
T PF13423_consen 158 PSNSNVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEE--EFWPKKNWLKIWIPPSI 232 (295)
T ss_pred CCCccchHHHHHHHHHhhccccc---ccccccccccceeeeeeccCCCcEEEEEccCCCcc--cccccccCCceecceee
Confidence 5 4589999999999888875 78999974 67888888999999999999999987 33378899999999999
Q ss_pred cCCccCCCCCCCCc-----CCCCCccEEEeEEEEEee-cCCCccEEEEEEeCC--CCCEEEeeCCce
Q 003426 416 DLDRENGKYLSPDA-----DRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTL--SDQWYKFDDERV 474 (821)
Q Consensus 416 dl~~~~~~~l~~~~-----~~~~~~~Y~L~gVIvH~G-~~~~GHY~ayir~~~--~~~W~~fnD~~V 474 (821)
++ ..++.++. ......+|+|.|+|+|.| +..+|||+||||... +++||.|||-.|
T Consensus 233 ~~----~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 233 NL----PHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred ec----cccccccccccccCCCCceEEEEEEEEEEecCCCCCCceEEEEEcCCCCCCcEEEECcEeC
Confidence 99 55554432 345678999999999999 589999999999863 369999999765
No 34
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=1.1e-31 Score=277.74 Aligned_cols=184 Identities=22% Similarity=0.370 Sum_probs=145.0
Q ss_pred cccCCCc-ccchhhHHHHhhccHhHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhHHHhhCCCCCCccc
Q 003426 198 GLKNQGA-TCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFM 276 (821)
Q Consensus 198 GL~N~Gn-TCYlNS~LQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~~~~~~~~~ 276 (821)
|..|.+| +|||-|+|-+||. .
T Consensus 1 g~~~~~~~~cy~d~~~~~~f~----------------------------------------------------------~ 22 (241)
T cd02670 1 GAQNHCNVSCYLDALLFAMFA----------------------------------------------------------E 22 (241)
T ss_pred CCccccCceeehHHHHHHHHH----------------------------------------------------------H
Confidence 7899999 9999999999987 6
Q ss_pred cCcHHHHHHHHHHHHHHHhcCCccccccccccee-EEeeEEEEeccCceeeeeeeeeeEEEeeC---CCCCHHHHHHHhh
Q 003426 277 QHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEG-HHMNYIECINVDYKSTRKESFYDLQLDVK---GCRDVYASFDKYV 352 (821)
Q Consensus 277 Q~Da~Ef~~~Lld~Le~~~~~~~~~~~i~~lF~g-~~~~~i~C~~c~~~s~~~e~f~~l~l~v~---~~~~l~esL~~~~ 352 (821)
|+|+.||+..|++.|+..+-. ..-++|.| +...... +.-.|.++.|.++.. +..+|++||+.|+
T Consensus 23 q~D~~e~~~~l~~~~~~~~~~-----~~~~~~~~g~~~~~~~-------~~~~e~~l~l~ip~~~~~~~~tLedcLe~~~ 90 (241)
T cd02670 23 QQDPEEFFNFITDKLLMPLLE-----PKVDIIHGGKKDQDDD-------KLVNERLLQIPVPDDDDGGGITLEQCLEQYF 90 (241)
T ss_pred hcCHHHHHHHHHHHHhhhhhh-----HHHHHHhcCccccccc-------cccccceEEeecccCCCCCcCCHHHHHHHHh
Confidence 999999999999999864321 23344544 3222111 233567777777764 3569999999999
Q ss_pred hhecccCCCccccccCCeeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCccccCCccCCCCCCCCc---
Q 003426 353 EVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDA--- 429 (821)
Q Consensus 353 ~~E~l~g~n~y~c~~c~~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~--- 429 (821)
+.|. |.++|++|+||||||.++. +...|+++.|.||..||| .+|+.+..
T Consensus 91 ~~e~----------------------i~~lP~vLiIhLKRF~~~~--~~~~Kl~~~I~fP~~Ldl----~~~~~~~~~~~ 142 (241)
T cd02670 91 NNSV----------------------FAKAPSCLIICLKRYGKTE--GKAQKMFKKILIPDEIDI----PDFVADDPRAC 142 (241)
T ss_pred chhh----------------------hhhCCCeEEEEEEccccCC--CcceeCCcEECCCCcCCc----hhhcccccccc
Confidence 9886 7899999999999999975 667999999999999999 55554331
Q ss_pred -----------------CCCCCccEEEeEEEEEee-cCCCccEEEEEEeCC-----------CCCEEEeeCCceeEcch
Q 003426 430 -----------------DRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTL-----------SDQWYKFDDERVTKEDV 479 (821)
Q Consensus 430 -----------------~~~~~~~Y~L~gVIvH~G-~~~~GHY~ayir~~~-----------~~~W~~fnD~~V~~v~~ 479 (821)
.......|+|+|||+|+| ++++|||+||+|... ++.|++|||..|+.+..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~FDD~~v~~~~~ 221 (241)
T cd02670 143 SKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDMADRDGVS 221 (241)
T ss_pred cccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccccccCCCCCeEEEecCcccccccc
Confidence 123456899999999999 589999999999875 37999999999887653
No 35
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-31 Score=305.52 Aligned_cols=286 Identities=27% Similarity=0.436 Sum_probs=228.3
Q ss_pred CCcccccccCCCcccchh--hHHHHhhccHhHHHHHhcCCCCCCCC--CCCCHHHHHHHHHHHHhcCC---CcccchhHH
Q 003426 192 KETGYVGLKNQGATCYMN--SLLQTLYHIPYFRKAVYHMPTTENDL--PSGSIPLALQSLFYKLQYND---TSVATKELT 264 (821)
Q Consensus 192 ~~~g~~GL~N~GnTCYlN--S~LQ~L~~~p~fr~~l~~~~~~~~~~--~~~~~~~~Lq~Lf~~l~~s~---~~v~~~~l~ 264 (821)
....+-|..|.+++|+.| ++.|.++.+..+|+..+...+..... ....+...+..+|....... ..+.++.+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~~~ 307 (587)
T KOG1864|consen 228 ANERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTRFI 307 (587)
T ss_pred ccccccCccccCccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccchhhhcccccccCcchhh
Confidence 335678999999999999 99999999999997776543321110 11123334444443332222 335566655
Q ss_pred HhhC--CCCCCccccCcHHHHHHHHHHHHHHHhcCCc--------------------------------cccccccccee
Q 003426 265 KSFG--WDTYDSFMQHDVQELNRVLCEKLEDKMKGTV--------------------------------VEGTIQQLFEG 310 (821)
Q Consensus 265 ~~~~--~~~~~~~~Q~Da~Ef~~~Lld~Le~~~~~~~--------------------------------~~~~i~~lF~g 310 (821)
..+. ...|..++||||+||+..+++.+++...... ....+..+|.|
T Consensus 308 ~~~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~~lf~g 387 (587)
T KOG1864|consen 308 SDLIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVSKLFQG 387 (587)
T ss_pred hhhhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHHHhhcC
Confidence 5543 2568889999999999999998876542110 23467899999
Q ss_pred EEeeEEEEeccCceeeeeeeeeeEEEeeC--CCCCHHHHHHHhhhhecccCCCccccccC-CeeeeeeeEEEecCCCeeE
Q 003426 311 HHMNYIECINVDYKSTRKESFYDLQLDVK--GCRDVYASFDKYVEVERLEGDNKYHAEEH-GLQDAKKGVLFIDFPPVLQ 387 (821)
Q Consensus 311 ~~~~~i~C~~c~~~s~~~e~f~~l~l~v~--~~~~l~esL~~~~~~E~l~g~n~y~c~~c-~~~~a~k~~~~~~lP~vL~ 387 (821)
++...++|.+|+..+.+.+.|.++++++. ...++..+++.|..+|.+.|+|+|.|++| +.|+|.+++.++++|.+|+
T Consensus 388 ~l~~et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~l~~k~lp~~L~ 467 (587)
T KOG1864|consen 388 ILTNETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAERRLKIKKLPYVLT 467 (587)
T ss_pred eeeeeeeeccccccccccccccccceeccccccccHHHHHHHhcchhhccCCCcccccccCchhhHHHhccccCCcceee
Confidence 99999999999999999999999999998 58899999999999999999999999998 6899999999999999999
Q ss_pred EEEEEEEEcccccceeccCceEeCCccccCCccCCCCCCCCcCCCCCccEEEeEEEEEee-cCCCccEEEEEEeCCCCCE
Q 003426 388 LQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTLSDQW 466 (821)
Q Consensus 388 i~L~Rf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVIvH~G-~~~~GHY~ayir~~~~~~W 466 (821)
||||||.|+.......|+..++.+|.++.+ ...+.++ .....+|.|+|||||.| +++.|||+||+|.. +-.|
T Consensus 468 l~Lkrfk~~~~~~~~~kl~~~v~~plel~l----~~~~~~~--~~~~~~Y~L~avVvH~G~~p~~GHYia~~r~~-~~nW 540 (587)
T KOG1864|consen 468 LHLKRFKYSEQQNRYTKLLYRVVFPLELRL----KDTLKDD--NNPDRKYDLVAVVVHLGSTPNRGHYVAYVKSL-DFNW 540 (587)
T ss_pred eehhccccccccccccccccccccccceee----ccccccc--cCccceeeEEEEEEeccCCCCCcceEEEEeeC-CCCc
Confidence 999999999866778999999999999999 3333322 22247899999999999 79999999999994 2239
Q ss_pred EEeeCCceeEcchHhHHH
Q 003426 467 YKFDDERVTKEDVKRALE 484 (821)
Q Consensus 467 ~~fnD~~V~~v~~~~v~~ 484 (821)
+.|||+.|..++.+.+.+
T Consensus 541 l~fdD~~V~~~s~~~v~~ 558 (587)
T KOG1864|consen 541 LLFDDDNVEPISEEPVSE 558 (587)
T ss_pred eecccccccccCcchhhh
Confidence 999999999999888854
No 36
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.5e-31 Score=320.60 Aligned_cols=297 Identities=29% Similarity=0.467 Sum_probs=252.4
Q ss_pred CCCCcccccccCCCcccchhhHHHHhhccHhHHHHHhcC------CCCCCCCCCCCHHHHHHHHHHHHhcCCC-cccchh
Q 003426 190 SKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHM------PTTENDLPSGSIPLALQSLFYKLQYNDT-SVATKE 262 (821)
Q Consensus 190 sk~~~g~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~------~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~-~v~~~~ 262 (821)
.....|.+||.|+||||||||.+|+|.+.+.++++++.. ...........+..+...+...++.... ++.+..
T Consensus 240 ~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~~v~~~~ 319 (842)
T KOG1870|consen 240 SPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKSAVAPTS 319 (842)
T ss_pred CCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCccccCchh
Confidence 456789999999999999999999999999999887542 2222333345677788888888888765 677877
Q ss_pred HHHhhCC--CCCCccccCcHHHHHHHHHHHHHHHhcCCc-----------------------------ccccccccceeE
Q 003426 263 LTKSFGW--DTYDSFMQHDVQELNRVLCEKLEDKMKGTV-----------------------------VEGTIQQLFEGH 311 (821)
Q Consensus 263 l~~~~~~--~~~~~~~Q~Da~Ef~~~Lld~Le~~~~~~~-----------------------------~~~~i~~lF~g~ 311 (821)
+...++. ..+.++.|||.+||+-+|+|-|++.+.... ....+.++|.|.
T Consensus 320 ~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~~~~ 399 (842)
T KOG1870|consen 320 FRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLFDGT 399 (842)
T ss_pred hhhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeeecce
Confidence 7777664 348899999999999999999998875321 234789999999
Q ss_pred EeeEEEEeccCceeeeeeeeeeEEEeeCCCCC------------------------------------------------
Q 003426 312 HMNYIECINVDYKSTRKESFYDLQLDVKGCRD------------------------------------------------ 343 (821)
Q Consensus 312 ~~~~i~C~~c~~~s~~~e~f~~l~l~v~~~~~------------------------------------------------ 343 (821)
.++...|..|+..+...++|.+|+|+++....
T Consensus 400 ~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~ 479 (842)
T KOG1870|consen 400 YKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLLSWELK 479 (842)
T ss_pred ecccccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHHHHHHhccchhhcc
Confidence 99999999999999999999999998872210
Q ss_pred --------------------------------------------------------------------------------
Q 003426 344 -------------------------------------------------------------------------------- 343 (821)
Q Consensus 344 -------------------------------------------------------------------------------- 343 (821)
T Consensus 480 ~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~ 559 (842)
T KOG1870|consen 480 PVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVSVLS 559 (842)
T ss_pred cceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccccccCcccCCCccccCCcceeeccC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 003426 344 -------------------------------------------------------------------------------- 343 (821)
Q Consensus 344 -------------------------------------------------------------------------------- 343 (821)
T Consensus 560 ~~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (842)
T KOG1870|consen 560 GAQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPSEDDNSDQDLSLECLSEESALRFFQ 639 (842)
T ss_pred CCcccccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCChhHhccccccchhhccCcccccccc
Confidence
Q ss_pred ----------------------------------------------------------HHHHHHHhhhhecccCCCcccc
Q 003426 344 ----------------------------------------------------------VYASFDKYVEVERLEGDNKYHA 365 (821)
Q Consensus 344 ----------------------------------------------------------l~esL~~~~~~E~l~g~n~y~c 365 (821)
|++|++.|+.+|.|..++.|.|
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~~E~L~~~~~w~C 719 (842)
T KOG1870|consen 640 SLESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLESCLELFSEPETLGKDDRWYC 719 (842)
T ss_pred cccccccccccccCCCceeecccChhhccccccccccccccccccccccccCCCCcccHHHHHHhhcchhcCCccccccC
Confidence 7899999999999999999999
Q ss_pred ccCC-eeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCcc-ccCCccCCCCCCCCcCCCCCccEEEeEEE
Q 003426 366 EEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQ-LDLDRENGKYLSPDADRSVRNLYTLHSVL 443 (821)
Q Consensus 366 ~~c~-~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~-Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVI 443 (821)
++|. .+.|.|...+++||++|+||||||.|. +....|+.+.++||.. ||+ ++|+..... ..|+|+||.
T Consensus 720 ~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~--r~~~~k~~~~v~fPi~~ld~----s~~~~~~~~----~~Y~l~av~ 789 (842)
T KOG1870|consen 720 PQCKELRQATKKLDLWRLPEILIIHLKRFQYS--RESSSKVKTKVEFPLGSLDL----SEFVVNKEQ----VLYDLYAVG 789 (842)
T ss_pred hHHHHHHHHhhhhhhhhCCceEEEEeecceee--chhhhhhCccccCCCcCCCc----chhhccCcc----ceeeeeeee
Confidence 9995 689999999999999999999999996 4456999999999998 998 777765432 889999999
Q ss_pred EEeecCCCccEEEEEEeCCCCCEEEeeCCceeEcchHhHHHhhcCCCCCCCCCCCCCCCCCcccccCccEEEEEEEeec
Q 003426 444 VHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRES 522 (821)
Q Consensus 444 vH~G~~~~GHY~ayir~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~ 522 (821)
+|+|...+|||+||.|...+++||.|||+.|++++++++.. ..||+|||+|++
T Consensus 790 nHyG~l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t--------------------------~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 790 NHYGQLSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDT--------------------------EAAYVLFYRRLD 842 (842)
T ss_pred cccCCcCCcchhhhhhcCCCCceEEeccccCCCCChhhccc--------------------------ccceEEEEEecC
Confidence 99999999999999999879999999999999998888733 589999999974
No 37
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9.4e-28 Score=257.87 Aligned_cols=294 Identities=24% Similarity=0.336 Sum_probs=221.6
Q ss_pred ccccCCCcccchhhHHHHhhccHhHHHHHhcCCC----CCCCCCCCCHHHHHHHHHHHHhcCCCcccchhHHHhhC----
Q 003426 197 VGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPT----TENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFG---- 268 (821)
Q Consensus 197 ~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~----~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~---- 268 (821)
+||.|+|||||||+.+|+|...|+++..+-.... +........+..+++.+|..|+.+ .++.|..+...+.
T Consensus 106 ~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~-~~v~pi~llqtl~~~~P 184 (473)
T KOG1872|consen 106 VGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK-GAVAPINLLQTLSSQYP 184 (473)
T ss_pred ccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc-CCcchHHHHHHHHHHhH
Confidence 6999999999999999999999999887754321 111111346778999999999999 8888888776652
Q ss_pred ----CCCCCccccCcHHHHHHHHHHHHHHHhcCCc----ccccccccceeEEeeEEEEeccCceeee--eeeeeeEEEee
Q 003426 269 ----WDTYDSFMQHDVQELNRVLCEKLEDKMKGTV----VEGTIQQLFEGHHMNYIECINVDYKSTR--KESFYDLQLDV 338 (821)
Q Consensus 269 ----~~~~~~~~Q~Da~Ef~~~Lld~Le~~~~~~~----~~~~i~~lF~g~~~~~i~C~~c~~~s~~--~e~f~~l~l~v 338 (821)
|.....+.||||.|++..++..++..+.... ....+..+|+..+.....|.+-+..... .|.|..|++-+
T Consensus 185 qfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~~~~~~~d~~f~~~~~~t~~~~e~e~~~~~~~~E~~~~L~c~i 264 (473)
T KOG1872|consen 185 QFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAPCLEAEAAAGFGAEFSTTMSCSEGEDEGGGAGRELVDQLKCII 264 (473)
T ss_pred HHHHHhhhhhHHHHHHhHhHHHhhhheeccccccccccchhHHHHHhhccccccceeeccCcccccccccccccccceEE
Confidence 2334457899999999999999988776433 2345788899999999999988776554 78999999988
Q ss_pred CCC-CCHHHHHHHhhhhecccCCCccccccCCee-eeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCcccc
Q 003426 339 KGC-RDVYASFDKYVEVERLEGDNKYHAEEHGLQ-DAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLD 416 (821)
Q Consensus 339 ~~~-~~l~esL~~~~~~E~l~g~n~y~c~~c~~~-~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~Ld 416 (821)
... ..+...|+.-++.++-. ..+.-|.. ...|...|.+||.+|+|+..||.|-...+...|+-..|.||..||
T Consensus 265 ~~~~~~~k~Gl~~~~~e~~~K-----~s~~lgr~a~y~k~~~isrlP~ylTvq~vrf~~k~k~~~~akil~~V~fP~~ld 339 (473)
T KOG1872|consen 265 NKTVHDMRFGLKSGLSEEIQK-----ISSILGRPAAYQKVMYISRLPEYLTVQEVRFFSKAKIMVVAKILNAVNFPKDLD 339 (473)
T ss_pred eeeechhhhhhhhhhhhhhhc-----cCcccCCChHHHHHhHhhcCcccceEEEEEEEeccccchHHHHHHhccChhhhh
Confidence 653 34555555444332221 11222322 124667789999999999999999988888999999999999999
Q ss_pred CCccCCCCCCCCc-----------------------------------------------CCCC-CccEEEeEEEEEee-
Q 003426 417 LDRENGKYLSPDA-----------------------------------------------DRSV-RNLYTLHSVLVHSG- 447 (821)
Q Consensus 417 l~~~~~~~l~~~~-----------------------------------------------~~~~-~~~Y~L~gVIvH~G- 447 (821)
.- ..++++. ..+. ...|+|.|||.|.|
T Consensus 340 ~~----d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~~~e~~~~~~~~~s~~~g~y~l~~vithkgr 415 (473)
T KOG1872|consen 340 QQ----DLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEVPLEGMYNKSGGKSRNSGLYDLQLVITHKGR 415 (473)
T ss_pred HH----HhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcccccccccchhccccccccccceeeeeEeeecccc
Confidence 83 3332210 0112 56899999999999
Q ss_pred cCCCccEEEEEEeCCCCCEEEeeCCceeEcchHhHHHhhcCCCCCCCCCCCCCCCCCcccccCccEEEEEEEe
Q 003426 448 GVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIR 520 (821)
Q Consensus 448 ~~~~GHY~ayir~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R 520 (821)
+..+|||+|++|.. .+.|++|||+.|+-+..+.+ ....||.+. .+||+|+|.-
T Consensus 416 ss~sghy~aw~r~s-~~~w~~fdd~~vs~v~~e~i-~~lsgggd~------------------~~ayvllyk~ 468 (473)
T KOG1872|consen 416 SSKSGHYVAWNRVS-EDKWGHFDDDMVSFVLGETI-LSLSGGGDW------------------HSAYVLLYKA 468 (473)
T ss_pred ccCCCcceEEEecc-CCceeeccccccccccccce-eeecCCCcc------------------chhhheeecc
Confidence 79999999999997 56999999999999976665 456677653 6899999964
No 38
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.5e-26 Score=239.49 Aligned_cols=297 Identities=23% Similarity=0.341 Sum_probs=223.3
Q ss_pred cccccCCCcccchhhHHHHhhccHhHHHHHhcCCCCCCC--CCCCCHHHHHHHHHHHHhcC--------------CCccc
Q 003426 196 YVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTEND--LPSGSIPLALQSLFYKLQYN--------------DTSVA 259 (821)
Q Consensus 196 ~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~~~--~~~~~~~~~Lq~Lf~~l~~s--------------~~~v~ 259 (821)
.+|+.|-||-|||||+||+|..|++|.+.+..++..... ..+..++.++..+......- ...+.
T Consensus 28 Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~~~~~ 107 (420)
T KOG1871|consen 28 PRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPEHVVE 107 (420)
T ss_pred CccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCceecccchhHHHHHHHHhhccccchhhhhhhccCCccccccc
Confidence 489999999999999999999999999988776632211 22234555666665544310 01111
Q ss_pred chhHHHh----------------hC---CCCCCccccCcHHHHHHHHHHHHHHHhcCC----------------------
Q 003426 260 TKELTKS----------------FG---WDTYDSFMQHDVQELNRVLCEKLEDKMKGT---------------------- 298 (821)
Q Consensus 260 ~~~l~~~----------------~~---~~~~~~~~Q~Da~Ef~~~Lld~Le~~~~~~---------------------- 298 (821)
-.+..++ ++ ......+.|.||.||+..++|.|++++-.-
T Consensus 108 ~ses~~~d~~~dav~~d~~~~~l~t~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i~~~n~ 187 (420)
T KOG1871|consen 108 KSESNKSDLQGDAVKPDPIYLDLLTMSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLINNGNL 187 (420)
T ss_pred hhhhhhhcccCccccCCchhhhcccCCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCccccccccccccccc
Confidence 1111111 11 123456889999999999999999887310
Q ss_pred ---------------------------------cccccccccceeEEeeEEEEeccCceeeeeeeeeeEEEee--CCCCC
Q 003426 299 ---------------------------------VVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDV--KGCRD 343 (821)
Q Consensus 299 ---------------------------------~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l~l~v--~~~~~ 343 (821)
.....|.++|+|+.++...-.. .+++...+||..|+|++ .+..+
T Consensus 188 ~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~-nkeS~tlqPF~tlqldiq~~~i~s 266 (420)
T KOG1871|consen 188 CNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPS-NKESATLQPFFTLQLDIQSEKIHS 266 (420)
T ss_pred ccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccc-cccccccCccceeeeeeeccccCC
Confidence 0245788999999998776443 44568899999999999 56779
Q ss_pred HHHHHHHhhhhecccCCCccccccCCeeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCccccCCccCCC
Q 003426 344 VYASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGK 423 (821)
Q Consensus 344 l~esL~~~~~~E~l~g~n~y~c~~c~~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~ 423 (821)
++++|+.+...|.+.+ |.-...+-..|.+++.+.+||++|++||+||.|.. ++...|+-+.+++|-.+.+. ..
T Consensus 267 v~~ales~~~re~lp~---~st~s~~eV~~s~q~~leklp~vlilhlkrF~ye~-tgg~~k~~K~i~~~~~l~i~---~~ 339 (420)
T KOG1871|consen 267 VQDALESLVARESLPG---YSTKSGQEVEASSQTTLEKLPPVLILHLKRFVYEK-TGGARKLGKKIEYPWTLKIS---KN 339 (420)
T ss_pred HHHHhhccChhhcccc---eecCCCCeechhhhhhHhhcchhhhhhhhHHHHHh-ccchhhhchhhhccceeeec---hh
Confidence 9999999999999987 55544455789999999999999999999999964 77789999999999998885 22
Q ss_pred CCCCCcC---CCCCccEEEeEEEEEee-cCCCccEEEEEEeCCCCCEEEeeCCceeEcchHhHHHhhcCCCCCCCCCCCC
Q 003426 424 YLSPDAD---RSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPG 499 (821)
Q Consensus 424 ~l~~~~~---~~~~~~Y~L~gVIvH~G-~~~~GHY~ayir~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~ 499 (821)
.++.... ......|+|.+|+.|.| ++..|||.+-+-+..-+.|+++||..|..+..++|++-
T Consensus 340 ~~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~-------------- 405 (420)
T KOG1871|consen 340 CFSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKV-------------- 405 (420)
T ss_pred hhccccchhhhccccccceEEEEEecccccccCceEEeeeecccCceeEeccceeeeccHhhhccc--------------
Confidence 2221111 23345799999999999 79999999999998788999999999999999998651
Q ss_pred CCCCCcccccCccEEEEEEEeec
Q 003426 500 FNNTPFKFTKYSNAYMLVYIRES 522 (821)
Q Consensus 500 ~~~~~~~~~~~~~AYmL~Y~R~~ 522 (821)
....+||+|.|+|.+
T Consensus 406 --------t~~r~~yllyY~~~d 420 (420)
T KOG1871|consen 406 --------TGSRTPYLLYYIEAD 420 (420)
T ss_pred --------cCccchheeEeeecC
Confidence 112589999999864
No 39
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.91 E-value=2.1e-24 Score=206.78 Aligned_cols=129 Identities=27% Similarity=0.579 Sum_probs=113.0
Q ss_pred CcEEEEEEcCccccCCCeeecCcEEEcceEEEEEEEECCCC-----CCcEEEEEEecCCCCCCCCceEEEEEEEEEEecC
Q 003426 52 TMKFTWTIENFSRLNTKKHYSDVFVVGGYKWRILIFPKGNN-----VDHLSMYLDVADSGTLPYGWSRYAQFSLAVVNQI 126 (821)
Q Consensus 52 ~~~~tw~I~n~S~l~~~~~~Sp~f~vgg~~W~I~~yP~G~~-----~~~lSvyL~~~~~~~~~~~W~v~a~f~l~L~n~~ 126 (821)
+++|+|+|+|||.++ +.++||+|.+||++|+|.+||+|+. .++|||||+|..... ...|++.|+|.|+|+|+.
T Consensus 2 ~~~~~~~I~~~S~l~-e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~-~~~w~i~a~~~~~l~~~~ 79 (137)
T cd03772 2 EATFSFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESD-STSWSCHAQAVLRIINYK 79 (137)
T ss_pred CcEEEEEECCcccCC-CcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCC-CCCCeEEEEEEEEEEcCC
Confidence 689999999999995 8999999999999999999999953 379999999976543 348999999999999998
Q ss_pred CCceeeeeccceeecCCCCCceeccccCCCcccCCCCCccccccceeeeeeeeeec
Q 003426 127 HSKYSIRKDTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKV 182 (821)
Q Consensus 127 ~~~~~~~~~~~~~F~~~~~dwG~~~Fi~~~~L~~~~~gfl~dD~l~I~~~V~v~~~ 182 (821)
++..+..+...|.|.....+|||.+||+|++|.++++|||.||+++|+|.|+|..+
T Consensus 80 ~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~~ 135 (137)
T cd03772 80 DDEPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADAP 135 (137)
T ss_pred CCcccEEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeCC
Confidence 65555556667889888889999999999999877899999999999999998663
No 40
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.91 E-value=3.8e-24 Score=204.02 Aligned_cols=124 Identities=38% Similarity=0.707 Sum_probs=110.1
Q ss_pred EEEEEEcCccccCCCeeecCcEEEcceEEEEEEEECCCCC-CcEEEEEEecCCCC----CCCCceEEEEEEEEEEecCCC
Q 003426 54 KFTWTIENFSRLNTKKHYSDVFVVGGYKWRILIFPKGNNV-DHLSMYLDVADSGT----LPYGWSRYAQFSLAVVNQIHS 128 (821)
Q Consensus 54 ~~tw~I~n~S~l~~~~~~Sp~f~vgg~~W~I~~yP~G~~~-~~lSvyL~~~~~~~----~~~~W~v~a~f~l~L~n~~~~ 128 (821)
+|+|+|.|||.+. +.+.|++|.||||.|+|.+||+|+.. +++||||++.+... .+.+|.++|+|.|.|+||.++
T Consensus 2 ~f~w~I~~fS~~~-~~~~S~~F~vGG~~W~l~~yP~G~~~~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~~~ 80 (134)
T cd03775 2 SFTWRIKNWSELE-KKVHSPKFKCGGFEWRILLFPQGNSQTGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPGDP 80 (134)
T ss_pred cEEEEECCcccCC-cceeCCCEEECCeeEEEEEeCCCCCCCCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCCCC
Confidence 6999999999986 89999999999999999999999864 89999999976543 256899999999999999887
Q ss_pred ceeeeeccceeecCCCCCceeccccCCCcccCC----CCCccccccceeeeeee
Q 003426 129 KYSIRKDTQHQFNARESDWGFTSFMPLGDLYDP----SRGYLVNDSVVVEAEVA 178 (821)
Q Consensus 129 ~~~~~~~~~~~F~~~~~dwG~~~Fi~~~~L~~~----~~gfl~dD~l~I~~~V~ 178 (821)
..+......|.|+....+|||.+||++++|++| ++|||+||+|+|+++|+
T Consensus 81 ~~~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 81 SIQLSNVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred ccceEccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 766666778999988889999999999999854 57999999999999884
No 41
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.86 E-value=1.7e-21 Score=203.32 Aligned_cols=276 Identities=22% Similarity=0.218 Sum_probs=209.3
Q ss_pred CCCCcccccccCCCcccchhhHHHHhhccHhHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhcCC---CcccchhHHHh
Q 003426 190 SKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYND---TSVATKELTKS 266 (821)
Q Consensus 190 sk~~~g~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~---~~v~~~~l~~~ 266 (821)
+.-.+|+|||.|..++-|.|++||+|.+.+++|++.+.-.. .-+....+...|..+...||..+ ..++|.++.++
T Consensus 128 ~tYLpG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n--~~d~~~~lv~rl~~l~rklw~~r~fk~hvSphe~lqa 205 (442)
T KOG2026|consen 128 STYLPGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEEN--YFDNLTELVQRLGELIRKLWNPRNFKGHVSPHEFLQA 205 (442)
T ss_pred CcceeeeeccchhhhHHHHHHHHHHHhccchhhhhhccccc--ccchhHHHHHHHHHHHHHhcChhhhcccCCHHHHHHH
Confidence 34567999999999999999999999999999999976321 12223456778888899999865 67999999887
Q ss_pred h---CCCCCCccccCcHHHHHHHHHHHHHHHhcCCcc-cccccccceeEEeeEEEEecc----CceeeeeeeeeeEEEee
Q 003426 267 F---GWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVV-EGTIQQLFEGHHMNYIECINV----DYKSTRKESFYDLQLDV 338 (821)
Q Consensus 267 ~---~~~~~~~~~Q~Da~Ef~~~Lld~Le~~~~~~~~-~~~i~~lF~g~~~~~i~C~~c----~~~s~~~e~f~~l~l~v 338 (821)
. ..+.+..++|-|+.||+.+||+.|+..+.++.. .++|+..|+|.++....-... .......-+|+.|.|++
T Consensus 206 V~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k~~~SIi~~~fqG~~ri~k~~~~~~~~~~~~~i~~~~Fl~LtLDL 285 (442)
T KOG2026|consen 206 VMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSKKASSIIHKSFQGEVRIVKEKQGEASENENKEISVMPFLYLTLDL 285 (442)
T ss_pred HHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCCCchhHhhHhhcceEEeeeeccccccccccceEEEEeeEEEEecC
Confidence 5 357889999999999999999999999998874 489999999999865543331 11233567899999999
Q ss_pred CCCCC--------------HHHHHHHhhhhecccCCCccccccCCeeeeeeeEEEecCCCeeEEEEEEEEEcccccceec
Q 003426 339 KGCRD--------------VYASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVK 404 (821)
Q Consensus 339 ~~~~~--------------l~esL~~~~~~E~l~g~n~y~c~~c~~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~K 404 (821)
+...- |-+.|..|-....-+ --+...| ++..+.++|++|++|++||.- +..-..|
T Consensus 286 P~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e--------~~~~~~~-~rf~l~k~P~ylifh~~rF~k--Nn~f~ek 354 (442)
T KOG2026|consen 286 PPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTE--------VVTPKLA-MRFRLTKLPRYLIFHMKRFKK--NNFFKEK 354 (442)
T ss_pred CCCCcccchhhhcccccchHHHHHHHhcCceeee--------ecchhhh-hheeeecCCceEEEEeeeccc--cCccccc
Confidence 86543 444444433211111 0111233 788899999999999999974 3455789
Q ss_pred cCceEeCC-ccccCCccCCCCCCCCcC-CCCCccEEEeEEEEEeecCCCccEEEEEEeCCCCCEEEeeCCceeEcchHhH
Q 003426 405 INDRYEFP-LQLDLDRENGKYLSPDAD-RSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRA 482 (821)
Q Consensus 405 i~~~v~fP-~~Ldl~~~~~~~l~~~~~-~~~~~~Y~L~gVIvH~G~~~~GHY~ayir~~~~~~W~~fnD~~V~~v~~~~v 482 (821)
..+-++|| ..+|+ .+.+..... ...-..|.|.|-++|. ..-|||...|++...++||..+|-.|++..++.+
T Consensus 355 NpTl~~f~~~~~~~----~~~~~~~~~~~~~~~~~~~~~N~i~~--~e~~~~riqi~~~~s~kW~eiqdl~v~e~~~qmi 428 (442)
T KOG2026|consen 355 NPTLVEFPYSEVDI----LHVLDRLKAVNHKVTQYSLVANAIHE--DEDGNFRIQIYDNSSEKWYEIQDLHVTERLPQMI 428 (442)
T ss_pred CCceeeccCCccch----hhhhhhcccccCccccccchhhhhcC--cccCceEEEEEeCCCcceEEecccchhhhhhHHH
Confidence 99999999 66777 444332211 1223679999999998 6779999999999899999999999999987776
Q ss_pred HH
Q 003426 483 LE 484 (821)
Q Consensus 483 ~~ 484 (821)
.-
T Consensus 429 ~L 430 (442)
T KOG2026|consen 429 FL 430 (442)
T ss_pred HH
Confidence 54
No 42
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.84 E-value=1.5e-20 Score=180.66 Aligned_cols=126 Identities=29% Similarity=0.464 Sum_probs=104.6
Q ss_pred CCcEEEEEEcCccccC---CCeeecCcEEEcce---EEEEEEEECCCC---CCcEEEEEEecCCCCCCCCceEEEEEEEE
Q 003426 51 PTMKFTWTIENFSRLN---TKKHYSDVFVVGGY---KWRILIFPKGNN---VDHLSMYLDVADSGTLPYGWSRYAQFSLA 121 (821)
Q Consensus 51 ~~~~~tw~I~n~S~l~---~~~~~Sp~f~vgg~---~W~I~~yP~G~~---~~~lSvyL~~~~~~~~~~~W~v~a~f~l~ 121 (821)
...+|+|+|+|||.++ ++.+.|++|.+||+ +|+|.+||+|+. .+|+||||++.+.. .|.+.|+|.|.
T Consensus 3 ~~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~~----~~~v~a~f~~~ 78 (139)
T cd03774 3 VKFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP----KSEVRAKFKFS 78 (139)
T ss_pred eEEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccCC----CCcEEEEEEEE
Confidence 4568999999999864 46899999999995 999999999963 47999999996432 35799999999
Q ss_pred EEecCCCceee-eeccceeecCCCCCceeccccCCCcccCCCCCccccccceeeeeeeeee
Q 003426 122 VVNQIHSKYSI-RKDTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRK 181 (821)
Q Consensus 122 L~n~~~~~~~~-~~~~~~~F~~~~~dwG~~~Fi~~~~L~~~~~gfl~dD~l~I~~~V~v~~ 181 (821)
|+|+.++.... .....+.|.. ..+|||.+||++++|.++.+|||.||+++|+|+|+|++
T Consensus 79 l~n~~~~~~~~~~~~~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 79 ILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred EEecCCCeeeeecccCcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 99998765432 2234577854 57999999999999987778999999999999999974
No 43
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.83 E-value=2.5e-20 Score=177.47 Aligned_cols=122 Identities=30% Similarity=0.631 Sum_probs=103.4
Q ss_pred CCCcEEEEEEcCccccC--CCeeecCcEEEcceEEEEEEEECCCC---CCcEEEEEEecCCCCCCCCceEEEEEEEEEEe
Q 003426 50 PPTMKFTWTIENFSRLN--TKKHYSDVFVVGGYKWRILIFPKGNN---VDHLSMYLDVADSGTLPYGWSRYAQFSLAVVN 124 (821)
Q Consensus 50 ~~~~~~tw~I~n~S~l~--~~~~~Sp~f~vgg~~W~I~~yP~G~~---~~~lSvyL~~~~~~~~~~~W~v~a~f~l~L~n 124 (821)
++..+++|+|.|||.++ ++.++|++|.+|||+|+|.+||+|+. .+|||+||++... ..|.+.++|+|+|+|
T Consensus 2 ~~~~~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~----~~~~~~~~~~l~lln 77 (132)
T cd03773 2 PPYDSATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSG----LGEASKYEYRVEMVH 77 (132)
T ss_pred CCCcccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecC----CCCceeEEEEEEEEc
Confidence 45678999999999984 36899999999999999999999974 3699999998653 236788899999999
Q ss_pred cCCCceeeeeccceeecCCCCCceeccccCCCcccCCCCCcccc--ccceeeeeee
Q 003426 125 QIHSKYSIRKDTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVN--DSVVVEAEVA 178 (821)
Q Consensus 125 ~~~~~~~~~~~~~~~F~~~~~dwG~~~Fi~~~~L~~~~~gfl~d--D~l~I~~~V~ 178 (821)
|.++..++.....+.|.. ..+|||.+||++++|.+ +|||.| |+++|+|.|+
T Consensus 78 q~~~~~~~~~~~~~~f~~-~~~wG~~~Fi~~~~L~~--~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 78 QANPTKNIKREFASDFEV-GECWGYNRFFRLDLLIN--EGYLLPENDTLILRFSVR 130 (132)
T ss_pred CCCCccceEEeccccccC-CCCcCHHHhccHHHHhh--CCCcCCCCCEEEEEEEEe
Confidence 966665666667788865 46799999999999965 799999 9999999997
No 44
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.79 E-value=1.4e-19 Score=176.03 Aligned_cols=123 Identities=25% Similarity=0.534 Sum_probs=98.9
Q ss_pred cEEEEEEcCccccC-------CCeeecCcEEEc--ceEEEEEEEECCCC---CCcEEEEEEecCCCCC-CCCceEEEEEE
Q 003426 53 MKFTWTIENFSRLN-------TKKHYSDVFVVG--GYKWRILIFPKGNN---VDHLSMYLDVADSGTL-PYGWSRYAQFS 119 (821)
Q Consensus 53 ~~~tw~I~n~S~l~-------~~~~~Sp~f~vg--g~~W~I~~yP~G~~---~~~lSvyL~~~~~~~~-~~~W~v~a~f~ 119 (821)
|+|+|+|.+||.++ ++.++||+|.+| ||.|+|.+||+|+. .+||||||++.+...+ ...|.+.|+|+
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~ 80 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKIT 80 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEE
Confidence 68999999999974 258999999999 99999999999973 2699999999775432 35799999999
Q ss_pred EEEEecCCC--ceeeeec-----cceeec-----CCCCCceeccccCCCcccCCCCCccccccceeeeee
Q 003426 120 LAVVNQIHS--KYSIRKD-----TQHQFN-----ARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEV 177 (821)
Q Consensus 120 l~L~n~~~~--~~~~~~~-----~~~~F~-----~~~~dwG~~~Fi~~~~L~~~~~gfl~dD~l~I~~~V 177 (821)
|+|+||.++ ..+.... ..+.|. ....+|||.+||++++|++ .|||.||+++|+|.|
T Consensus 81 ~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~v 148 (149)
T cd00270 81 LTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLES--RGYVKDDTLFIKVEV 148 (149)
T ss_pred EEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhcc--CCCEeCCEEEEEEEE
Confidence 999999874 2222111 123453 2457899999999999975 589999999999987
No 45
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.77 E-value=4.6e-19 Score=171.85 Aligned_cols=124 Identities=22% Similarity=0.425 Sum_probs=98.0
Q ss_pred cEEEEEEcCccccCC-----C--eeecCcEEE--cceEEEEEEEECCCC---CCcEEEEEEecCCCC-CCCCceEEEEEE
Q 003426 53 MKFTWTIENFSRLNT-----K--KHYSDVFVV--GGYKWRILIFPKGNN---VDHLSMYLDVADSGT-LPYGWSRYAQFS 119 (821)
Q Consensus 53 ~~~tw~I~n~S~l~~-----~--~~~Sp~f~v--gg~~W~I~~yP~G~~---~~~lSvyL~~~~~~~-~~~~W~v~a~f~ 119 (821)
|+|.|+|.|||.++. + .+.||+|.+ |||.|+|.+||+|.. .+|||+||++.+... ....|.+.|+|+
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~ 80 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTIT 80 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeE
Confidence 589999999997532 2 388999986 799999999999974 369999999986543 245799999999
Q ss_pred EEEEecCCCceeeee-----ccceeecC-----CCCCceeccccCCCcccCCCCCccccccceeeeeee
Q 003426 120 LAVVNQIHSKYSIRK-----DTQHQFNA-----RESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVA 178 (821)
Q Consensus 120 l~L~n~~~~~~~~~~-----~~~~~F~~-----~~~dwG~~~Fi~~~~L~~~~~gfl~dD~l~I~~~V~ 178 (821)
|+|++|.++...+.. ...+.|.. .+.+|||.+||++++|+. .+||.||+++|+|.|.
T Consensus 81 ~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 81 LTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQ--RGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhh--CCCccCCEEEEEEEEC
Confidence 999999864432211 12345642 346799999999999975 6899999999999983
No 46
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.77 E-value=8.8e-19 Score=168.51 Aligned_cols=125 Identities=19% Similarity=0.349 Sum_probs=100.4
Q ss_pred cEEEEEEcCccccCC-----C--eeecCcE--EEcceEEEEEEEECCCC---CCcEEEEEEecCCCCCC-CCceEEEEEE
Q 003426 53 MKFTWTIENFSRLNT-----K--KHYSDVF--VVGGYKWRILIFPKGNN---VDHLSMYLDVADSGTLP-YGWSRYAQFS 119 (821)
Q Consensus 53 ~~~tw~I~n~S~l~~-----~--~~~Sp~f--~vgg~~W~I~~yP~G~~---~~~lSvyL~~~~~~~~~-~~W~v~a~f~ 119 (821)
|+|.|+|.+||.+++ + .++||+| .+|||.|+|.+||+|.+ .+||||||.+..++.++ ..|.+.++|+
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~t 80 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT 80 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEE
Confidence 689999999998752 3 6999999 99999999999999975 36999999998765433 3799999999
Q ss_pred EEEEecCCCcee---eeec--cceeecCC----CCCceeccccCCCcccCCCCCccccccceeeeee
Q 003426 120 LAVVNQIHSKYS---IRKD--TQHQFNAR----ESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEV 177 (821)
Q Consensus 120 l~L~n~~~~~~~---~~~~--~~~~F~~~----~~dwG~~~Fi~~~~L~~~~~gfl~dD~l~I~~~V 177 (821)
|+|++|.+.... .... ..+.|... +..||+.+||++++|+.++++||.||+++|+|.|
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 81 LMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred EEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 999999754332 1111 13557443 4579999999999997655699999999999977
No 47
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.76 E-value=3.9e-18 Score=159.59 Aligned_cols=123 Identities=46% Similarity=0.759 Sum_probs=101.9
Q ss_pred cEEEEEEcCccccCCCeeecCcEEEcceEEEEEEEECCCC--CCcEEEEEEecCCCCCCCCceEEEEEEEEEEecCCCce
Q 003426 53 MKFTWTIENFSRLNTKKHYSDVFVVGGYKWRILIFPKGNN--VDHLSMYLDVADSGTLPYGWSRYAQFSLAVVNQIHSKY 130 (821)
Q Consensus 53 ~~~tw~I~n~S~l~~~~~~Sp~f~vgg~~W~I~~yP~G~~--~~~lSvyL~~~~~~~~~~~W~v~a~f~l~L~n~~~~~~ 130 (821)
++|+|+|.+|+...++.++||.|.+||++|+|.+||+|.. .+++||||+|.........|.+.|+|.|.|++++++.
T Consensus 1 ~~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 79 (126)
T cd00121 1 GKHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGESGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGK- 79 (126)
T ss_pred CEEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCCCCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCc-
Confidence 4799999999995558999999999999999999999974 4699999999876654568999999999999998433
Q ss_pred eeeeccceeec-CCCCCceeccccCCCcccCCCCCccccccceeeeeee
Q 003426 131 SIRKDTQHQFN-ARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVA 178 (821)
Q Consensus 131 ~~~~~~~~~F~-~~~~dwG~~~Fi~~~~L~~~~~gfl~dD~l~I~~~V~ 178 (821)
.......+.|. ....+|||.+||++++|.+ .+++.||+|+|+|+|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~--~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 80 SLSKSFTHVFFSEKGSGWGFPKFISWDDLED--SYYLVDDSLTIEVEVK 126 (126)
T ss_pred cceEeccCCcCCCCCCCCChHHeeEHHHhcc--CCcEECCEEEEEEEEC
Confidence 23334444553 6678999999999999985 3449999999999883
No 48
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.76 E-value=1.6e-18 Score=165.82 Aligned_cols=125 Identities=19% Similarity=0.383 Sum_probs=98.3
Q ss_pred cEEEEEEcCccccCC-------CeeecCcEEEc--ceEEEEEEEECCCC---CCcEEEEEEecCCCCCC-CCceEEEEEE
Q 003426 53 MKFTWTIENFSRLNT-------KKHYSDVFVVG--GYKWRILIFPKGNN---VDHLSMYLDVADSGTLP-YGWSRYAQFS 119 (821)
Q Consensus 53 ~~~tw~I~n~S~l~~-------~~~~Sp~f~vg--g~~W~I~~yP~G~~---~~~lSvyL~~~~~~~~~-~~W~v~a~f~ 119 (821)
|+|.|+|+||++..+ ..++||+|+.+ ||.|+|.+||+|.+ .+|+|+||.+..+..++ ..|.+.++|+
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~t 80 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKVT 80 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEEE
Confidence 689999999996421 36999999887 99999999999975 36999999998654322 3799999999
Q ss_pred EEEEecCCCce--eeeecc--ceeec----CCCCCceeccccCCCcccCCCCCccccccceeeeee
Q 003426 120 LAVVNQIHSKY--SIRKDT--QHQFN----ARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEV 177 (821)
Q Consensus 120 l~L~n~~~~~~--~~~~~~--~~~F~----~~~~dwG~~~Fi~~~~L~~~~~gfl~dD~l~I~~~V 177 (821)
|+|++|.+... ...... .+.|. ..+..||+.+||++++|+...++||.||+++|+|.|
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V 146 (147)
T cd03779 81 FMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV 146 (147)
T ss_pred EEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence 99999975432 111111 25675 445679999999999997533599999999999987
No 49
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.76 E-value=2.5e-18 Score=171.21 Aligned_cols=127 Identities=20% Similarity=0.386 Sum_probs=100.4
Q ss_pred CCCcEEEEEEcCccccCC-----C--eeecCcEEEc--ceEEEEEEEECCCC---CCcEEEEEEecCCCCCC-CCceEEE
Q 003426 50 PPTMKFTWTIENFSRLNT-----K--KHYSDVFVVG--GYKWRILIFPKGNN---VDHLSMYLDVADSGTLP-YGWSRYA 116 (821)
Q Consensus 50 ~~~~~~tw~I~n~S~l~~-----~--~~~Sp~f~vg--g~~W~I~~yP~G~~---~~~lSvyL~~~~~~~~~-~~W~v~a 116 (821)
...|+|.|+|.|||.+++ + .++||+|++| ||.|+|.+||+|.+ .+|+|+||.+..++.++ ..|.+.+
T Consensus 36 ~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~~ 115 (186)
T cd03777 36 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 115 (186)
T ss_pred ccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCceeE
Confidence 346999999999998642 2 6999999999 99999999999975 36999999998754332 3799999
Q ss_pred EEEEEEEecCCCceeeee-----ccceeec-CC---CCCceeccccCCCcccCCCCCccccccceeeeeee
Q 003426 117 QFSLAVVNQIHSKYSIRK-----DTQHQFN-AR---ESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVA 178 (821)
Q Consensus 117 ~f~l~L~n~~~~~~~~~~-----~~~~~F~-~~---~~dwG~~~Fi~~~~L~~~~~gfl~dD~l~I~~~V~ 178 (821)
+|+|+|++|.+....+.. ...+.|. +. +..||+++||++++|+. ++||+||+++|+|.|.
T Consensus 116 ~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~--~~ylkdD~l~Irv~v~ 184 (186)
T cd03777 116 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVD 184 (186)
T ss_pred EEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhcc--CCcEeCCEEEEEEEEe
Confidence 999999999642111110 1124465 33 45799999999999975 8899999999999885
No 50
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.75 E-value=2e-18 Score=168.41 Aligned_cols=123 Identities=25% Similarity=0.477 Sum_probs=97.9
Q ss_pred cEEEEEEcCccccCC-------CeeecCcEEEc--ceEEEEEEEECCCC---CCcEEEEEEecCCCCCC-CCceEEEEEE
Q 003426 53 MKFTWTIENFSRLNT-------KKHYSDVFVVG--GYKWRILIFPKGNN---VDHLSMYLDVADSGTLP-YGWSRYAQFS 119 (821)
Q Consensus 53 ~~~tw~I~n~S~l~~-------~~~~Sp~f~vg--g~~W~I~~yP~G~~---~~~lSvyL~~~~~~~~~-~~W~v~a~f~ 119 (821)
|+|.|+|.+||.+++ ..+.|++|.+| ||.|+|.+||+|.. .+|||+||++...+.++ ..|.+.|+|+
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~ 80 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRIT 80 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEE
Confidence 689999999997642 47999999999 99999999999964 36999999998755433 4899999999
Q ss_pred EEEEecCCC--c--eeeee-----ccceeec--------CCCCCceeccccCCCcccCCCCCccccccceeeeee
Q 003426 120 LAVVNQIHS--K--YSIRK-----DTQHQFN--------ARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEV 177 (821)
Q Consensus 120 l~L~n~~~~--~--~~~~~-----~~~~~F~--------~~~~dwG~~~Fi~~~~L~~~~~gfl~dD~l~I~~~V 177 (821)
|+|++|.++ . .++.. .....|. ..+.+|||.+||++++|+. ++||.||+++|+|.|
T Consensus 81 ~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~Irc~v 153 (154)
T cd03781 81 FTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLKK--RNYIKDDAIFLRASV 153 (154)
T ss_pred EEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHhh--CCcccCCEEEEEEEe
Confidence 999999764 1 11111 1123443 2345799999999999975 789999999999987
No 51
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.72 E-value=2.2e-17 Score=160.88 Aligned_cols=124 Identities=22% Similarity=0.463 Sum_probs=94.7
Q ss_pred CcEEEEEEcCccccC-C----CeeecCcE-EEcceEEEEEEEECCCC--CCcEEEEEEecCCCCC-CCCce-EEEEEEEE
Q 003426 52 TMKFTWTIENFSRLN-T----KKHYSDVF-VVGGYKWRILIFPKGNN--VDHLSMYLDVADSGTL-PYGWS-RYAQFSLA 121 (821)
Q Consensus 52 ~~~~tw~I~n~S~l~-~----~~~~Sp~f-~vgg~~W~I~~yP~G~~--~~~lSvyL~~~~~~~~-~~~W~-v~a~f~l~ 121 (821)
+.+|+|+|.|||.++ + ..++||+| .+|||.|+|.+||+|+. .+||||||++...... ...|. +.|+|+|+
T Consensus 1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~~ 80 (167)
T cd03771 1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTESYPGYTGLYFHLCSGENDDVLEWPCPNRQATMT 80 (167)
T ss_pred CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCCCCCcceEEEEEecCCccccccCcceeEEEEEE
Confidence 357999999999985 2 47999999 99999999999999975 4799999999875442 34799 58999999
Q ss_pred EEecCC---Cceeeee----cc---c---------------eeecC-------CCCCceeccccCCCcccCCCCCccccc
Q 003426 122 VVNQIH---SKYSIRK----DT---Q---------------HQFNA-------RESDWGFTSFMPLGDLYDPSRGYLVND 169 (821)
Q Consensus 122 L~n~~~---~~~~~~~----~~---~---------------~~F~~-------~~~dwG~~~Fi~~~~L~~~~~gfl~dD 169 (821)
|++|.. ...++.. .. . ..++. .+.+|||..||++++|.. ++||+||
T Consensus 81 LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~--r~ylk~d 158 (167)
T cd03771 81 LLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRR--RDFLKGD 158 (167)
T ss_pred EECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhcc--CCCCcCC
Confidence 999963 1111111 00 0 00111 234799999999999976 7799999
Q ss_pred cceeeeee
Q 003426 170 SVVVEAEV 177 (821)
Q Consensus 170 ~l~I~~~V 177 (821)
+|.|++.+
T Consensus 159 tl~i~~~~ 166 (167)
T cd03771 159 DLIILLDF 166 (167)
T ss_pred EEEEEEEe
Confidence 99999876
No 52
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.71 E-value=8.6e-18 Score=156.41 Aligned_cols=116 Identities=41% Similarity=0.717 Sum_probs=96.9
Q ss_pred EcCccccCC-C-eeecCcEEEcceEEEEEEEECCCCCCcEEEEEEecCCCCCC-CCceEEEEEEEEEEecCCCceeeeec
Q 003426 59 IENFSRLNT-K-KHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADSGTLP-YGWSRYAQFSLAVVNQIHSKYSIRKD 135 (821)
Q Consensus 59 I~n~S~l~~-~-~~~Sp~f~vgg~~W~I~~yP~G~~~~~lSvyL~~~~~~~~~-~~W~v~a~f~l~L~n~~~~~~~~~~~ 135 (821)
|+|||.+++ + .+.|+.|.+||++|+|.+||+|+ .+++|+||+|....... .+|+|.|++++.|+++.++.......
T Consensus 1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~-~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
T PF00917_consen 1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGN-GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSISKRIK 79 (119)
T ss_dssp ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTES-TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEEEEEEE
T ss_pred CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCC-cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCcceeeee
Confidence 789999973 3 34458999999999999999998 78999999999876543 58999999999999998887443333
Q ss_pred cceeecCCCCCceeccccCCCcccCCCCCccccccceeeeeeee
Q 003426 136 TQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAV 179 (821)
Q Consensus 136 ~~~~F~~~~~dwG~~~Fi~~~~L~~~~~gfl~dD~l~I~~~V~v 179 (821)
.+.|... .+|||.+|++|++|.++ .|+.||+++|+|+|+|
T Consensus 80 -~~~F~~~-~~~g~~~fi~~~~l~~~--~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 80 -SHSFNNP-SSWGWSSFISWEDLEDP--YFLVDDSLTIEVEVKI 119 (119)
T ss_dssp -CEEECTT-SEEEEEEEEEHHHHTTC--TTSBTTEEEEEEEEEE
T ss_pred -eeEEeee-cccchhheeEHHHhCcc--CCeECCEEEEEEEEEC
Confidence 6888654 88999999999999863 3899999999999986
No 53
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.70 E-value=6.1e-17 Score=184.28 Aligned_cols=293 Identities=16% Similarity=0.199 Sum_probs=197.8
Q ss_pred cccccCCCCcccccccCCCcccchhhHHHHhhccHhHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcccchhH
Q 003426 185 YWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYND-TSVATKEL 263 (821)
Q Consensus 185 ~~~~~sk~~~g~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~-~~v~~~~l 263 (821)
.+++..-..|-|.||.-.+-.-|.|++||.|+++|++|.+++..+ +....|++|+|.-||.+|..+. .+....+|
T Consensus 488 dFDF~~~NqT~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~----C~~e~CL~CELGFLF~Ml~~S~G~~Cqa~NF 563 (1118)
T KOG1275|consen 488 DFDFQDYNQTTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHI----CTKEFCLLCELGFLFTMLDSSTGDPCQANNF 563 (1118)
T ss_pred cCCCcccccceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCc----cchhHHHHHHHHHHHHHHhhhcCCccchhHH
Confidence 345556678899999999999999999999999999999999863 3445699999999999998864 57788888
Q ss_pred HHhhCCCC------------------CCccccCcHH--------------HHHHHHHHHHHH-HhcCCccccccccccee
Q 003426 264 TKSFGWDT------------------YDSFMQHDVQ--------------ELNRVLCEKLED-KMKGTVVEGTIQQLFEG 310 (821)
Q Consensus 264 ~~~~~~~~------------------~~~~~Q~Da~--------------Ef~~~Lld~Le~-~~~~~~~~~~i~~lF~g 310 (821)
.++|.-.. .+...-||+. ++.+........ +.-.......+.+.|+-
T Consensus 564 lraf~t~~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d~~~~~~~~~s~~~~~~~~~vn~~~~l~q~F~~ 643 (1118)
T KOG1275|consen 564 LRAFRTNPEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLDCQDCRGLQQSESVDGESFKVNYAPVLQQSFCQ 643 (1118)
T ss_pred HHHHhhChHhhhhcccccchhhccccchHHHhhhhhhccchhhhhhhhHHHhhhhhhhhcccCceeeecchhHHHHHhhh
Confidence 88873210 0011122333 332222221110 00011234578899999
Q ss_pred EEeeEEEEeccCceeeeeeeeeeEEEeeCCCC---------CHHHHHHHhhhhecccCCCccccccCCe-eeeeeeEEEe
Q 003426 311 HHMNYIECINVDYKSTRKESFYDLQLDVKGCR---------DVYASFDKYVEVERLEGDNKYHAEEHGL-QDAKKGVLFI 380 (821)
Q Consensus 311 ~~~~~i~C~~c~~~s~~~e~f~~l~l~v~~~~---------~l~esL~~~~~~E~l~g~n~y~c~~c~~-~~a~k~~~~~ 380 (821)
.+.....|..|+.++.+....+.+.+..++.. +..+.|+.-+. +...-+-.|+.|++ +....+..++
T Consensus 644 ~~e~~~~Cg~C~~~~~~~k~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~---l~kn~~~~C~~C~k~ep~~q~~~vr 720 (1118)
T KOG1275|consen 644 EIEKSLRCGECGDEKQKSKSLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLS---LFKNKQAWCETCTKPEPTSQKKNVR 720 (1118)
T ss_pred HHHHhhhcccccchhhhhhhhhheeecCCCccchhhcccccchHHHhhhhhh---cccccccccccccCCCCcccccccc
Confidence 99999999999998877666666666554321 23344433322 22212246999976 4567777889
Q ss_pred cCCCeeEEEEEEEEEcccccc--eeccCceEeCCccccCCccC--CC----CCC------CCcCCCCCccEEEeEEEEEe
Q 003426 381 DFPPVLQLQLKRFEYDFMRDA--MVKINDRYEFPLQLDLDREN--GK----YLS------PDADRSVRNLYTLHSVLVHS 446 (821)
Q Consensus 381 ~lP~vL~i~L~Rf~~d~~~~~--~~Ki~~~v~fP~~Ldl~~~~--~~----~l~------~~~~~~~~~~Y~L~gVIvH~ 446 (821)
.+|.+|.+...-+.-...... ..|.-..+.+|..+.|.+-. .. ..+ ++-+.+.-.+|+|.|+|+|.
T Consensus 721 ~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v~~~s~~~~~~~~~~d~~~~~vYeL~a~V~~I 800 (1118)
T KOG1275|consen 721 SLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLVSTISDLDVSPLPDYDEPSAVVYELDAMVHAI 800 (1118)
T ss_pred cCcceeeeeeeccchhhhhhHHHhhccccccccchheeEEEecccceeeeeeccccCCCCccccCCceEEEEeeeEEEEe
Confidence 999999998887753222211 23556678899988773210 00 000 01123344799999999999
Q ss_pred ec-CCCccEEEEEEeC--------CCCCEEEeeCCceeEcchHhHHH
Q 003426 447 GG-VHGGHYYAFIRPT--------LSDQWYKFDDERVTKEDVKRALE 484 (821)
Q Consensus 447 G~-~~~GHY~ayir~~--------~~~~W~~fnD~~V~~v~~~~v~~ 484 (821)
|+ .+.+|.+++||-. .+.+||.|||-.|++++++|++.
T Consensus 801 ~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~ 847 (1118)
T KOG1275|consen 801 GDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALH 847 (1118)
T ss_pred ccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheE
Confidence 95 6999999999942 24599999999999999999975
No 54
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.68 E-value=1.1e-16 Score=154.70 Aligned_cols=126 Identities=21% Similarity=0.389 Sum_probs=101.1
Q ss_pred CCCcEEEEEEcCccccCC-------CeeecCcEEEc--ceEEEEEEEECCCCC---CcEEEEEEecCCCCCC-CCceEEE
Q 003426 50 PPTMKFTWTIENFSRLNT-------KKHYSDVFVVG--GYKWRILIFPKGNNV---DHLSMYLDVADSGTLP-YGWSRYA 116 (821)
Q Consensus 50 ~~~~~~tw~I~n~S~l~~-------~~~~Sp~f~vg--g~~W~I~~yP~G~~~---~~lSvyL~~~~~~~~~-~~W~v~a 116 (821)
...|+|+|+|+|||++.. ..++||+|+.+ ||+|+|.+||+|++. .|||+|+++..++.++ ..|.+..
T Consensus 16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~~ 95 (164)
T cd03778 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 95 (164)
T ss_pred ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCceee
Confidence 446999999999998632 37899999775 899999999999753 5899999999988877 6999999
Q ss_pred EEEEEEEecCCCceeeeecc--------ceee-cCCCCCceeccccCCCcccCCCCCccccccceeeeee
Q 003426 117 QFSLAVVNQIHSKYSIRKDT--------QHQF-NARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEV 177 (821)
Q Consensus 117 ~f~l~L~n~~~~~~~~~~~~--------~~~F-~~~~~dwG~~~Fi~~~~L~~~~~gfl~dD~l~I~~~V 177 (821)
+++|+|++|.+..+ +.... -++. +..+..|||..|+++++|.. .+|||+||++.|+|.|
T Consensus 96 ~itl~llDQ~~r~h-i~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~-~~~Yv~dDtlfIk~~V 163 (164)
T cd03778 96 KVTLMLLDQNNREH-VIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEA-KNSYVRDDAIFIKAIV 163 (164)
T ss_pred EEEEEEECCCCCCc-ceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHccc-cCCcccCCeEEEEEEE
Confidence 99999999976432 21111 1223 34456799999999999974 3699999999999977
No 55
>smart00061 MATH meprin and TRAF homology.
Probab=99.62 E-value=3.3e-15 Score=132.95 Aligned_cols=93 Identities=31% Similarity=0.523 Sum_probs=80.4
Q ss_pred EEEEEcCccccC-CCeeecCcEEEcceEEEEEEEECCCCCCcEEEEEEecCCCCCCCCceEEEEEEEEEEecCCCceeee
Q 003426 55 FTWTIENFSRLN-TKKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADSGTLPYGWSRYAQFSLAVVNQIHSKYSIR 133 (821)
Q Consensus 55 ~tw~I~n~S~l~-~~~~~Sp~f~vgg~~W~I~~yP~G~~~~~lSvyL~~~~~~~~~~~W~v~a~f~l~L~n~~~~~~~~~ 133 (821)
++|+|+||+.++ ++.+.||+|.+||++|+|.+||+ .+|||+||+|.+....+.+|++.|+|+|+|++++++.. .
T Consensus 2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~---~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~--~ 76 (95)
T smart00061 2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRK---NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL--S 76 (95)
T ss_pred ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEc---CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE--e
Confidence 689999999984 57899999999999999999998 47999999998776555589999999999999987654 3
Q ss_pred eccceeecCCCCCceecccc
Q 003426 134 KDTQHQFNARESDWGFTSFM 153 (821)
Q Consensus 134 ~~~~~~F~~~~~dwG~~~Fi 153 (821)
....+.|.. ..+|||.+||
T Consensus 77 ~~~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 77 KKDKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred eeeeEEEcC-CCccceeeEC
Confidence 456788976 7899999986
No 56
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.39 E-value=4.7e-13 Score=128.91 Aligned_cols=123 Identities=21% Similarity=0.439 Sum_probs=93.8
Q ss_pred cEEEEEEcCccccCC-----CeeecCcEEEc-ceEEEEEEEECCCC----CCcEEEEEEecCCCCCCC-CceE-EEEEEE
Q 003426 53 MKFTWTIENFSRLNT-----KKHYSDVFVVG-GYKWRILIFPKGNN----VDHLSMYLDVADSGTLPY-GWSR-YAQFSL 120 (821)
Q Consensus 53 ~~~tw~I~n~S~l~~-----~~~~Sp~f~vg-g~~W~I~~yP~G~~----~~~lSvyL~~~~~~~~~~-~W~v-~a~f~l 120 (821)
..+.|+|.||+++.+ ..++||+|+.+ ||..+|.+||+|++ +.|+|||+++..++.++. .|.| .-+++|
T Consensus 2 p~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~itl 81 (167)
T cd03783 2 PNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAII 81 (167)
T ss_pred CceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEEE
Confidence 468999999998532 57999999885 99999999999975 259999999998876554 8996 569999
Q ss_pred EEEecCC---Cceeeee----ccc---------eeec--------------CCCCCceeccccCCCcccCCCCCcccccc
Q 003426 121 AVVNQIH---SKYSIRK----DTQ---------HQFN--------------ARESDWGFTSFMPLGDLYDPSRGYLVNDS 170 (821)
Q Consensus 121 ~L~n~~~---~~~~~~~----~~~---------~~F~--------------~~~~dwG~~~Fi~~~~L~~~~~gfl~dD~ 170 (821)
+|++|+. ...++.. ... ..|. ..+.++||+.||++++|.. ++||+||+
T Consensus 82 ~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~--r~yikdDt 159 (167)
T cd03783 82 TVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRR--RSFLKNDD 159 (167)
T ss_pred EEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhh--CCcccCCe
Confidence 9999963 1111100 000 0121 1345799999999999976 89999999
Q ss_pred ceeeeee
Q 003426 171 VVVEAEV 177 (821)
Q Consensus 171 l~I~~~V 177 (821)
+.|.+.+
T Consensus 160 lfI~~~~ 166 (167)
T cd03783 160 LIIFVDF 166 (167)
T ss_pred EEEEEec
Confidence 9998775
No 57
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.37 E-value=9.1e-13 Score=126.12 Aligned_cols=123 Identities=21% Similarity=0.455 Sum_probs=95.4
Q ss_pred cEEEEEEcCccccCC-----CeeecCcEEE-cceEEEEEEEECCCC--CCcEEEEEEecCCCCCCC-CceEE-EEEEEEE
Q 003426 53 MKFTWTIENFSRLNT-----KKHYSDVFVV-GGYKWRILIFPKGNN--VDHLSMYLDVADSGTLPY-GWSRY-AQFSLAV 122 (821)
Q Consensus 53 ~~~tw~I~n~S~l~~-----~~~~Sp~f~v-gg~~W~I~~yP~G~~--~~~lSvyL~~~~~~~~~~-~W~v~-a~f~l~L 122 (821)
.++.|+|.||+++.+ ..++||+|+. .||+.++.+||+|++ ..|||+|+++..++.++. .|.+. -+++|+|
T Consensus 2 p~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~~L 81 (167)
T cd03782 2 PEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDYPGNLAIYLHLTSGPNDDQLQWPCPWQQATMML 81 (167)
T ss_pred CcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCCCCEEEEEEEEeccCCCccccCCCcCCeEEEEE
Confidence 579999999998632 5799999965 599999999999975 469999999998876554 89999 8999999
Q ss_pred EecCC---Cceeeee--c-------c-ceee--c----------CC-------CCCceeccccCCCcccCCCCCcccccc
Q 003426 123 VNQIH---SKYSIRK--D-------T-QHQF--N----------AR-------ESDWGFTSFMPLGDLYDPSRGYLVNDS 170 (821)
Q Consensus 123 ~n~~~---~~~~~~~--~-------~-~~~F--~----------~~-------~~dwG~~~Fi~~~~L~~~~~gfl~dD~ 170 (821)
++|+. ...++.. . . +..| . .. +.+|||+.||++++|.. +.||+||+
T Consensus 82 lDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~--r~yikdD~ 159 (167)
T cd03782 82 LDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRS--RDFIKGDD 159 (167)
T ss_pred EcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhh--cCcccCCe
Confidence 99964 2222222 0 0 0123 1 11 46799999999999975 89999999
Q ss_pred ceeeeee
Q 003426 171 VVVEAEV 177 (821)
Q Consensus 171 l~I~~~V 177 (821)
+.|-+.+
T Consensus 160 ifi~~~~ 166 (167)
T cd03782 160 VIFLLTM 166 (167)
T ss_pred EEEEEec
Confidence 9988765
No 58
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=98.48 E-value=2.8e-07 Score=93.41 Aligned_cols=224 Identities=17% Similarity=0.259 Sum_probs=126.1
Q ss_pred cCCCcccchhhHHHHhhccHhHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhHHHhhC--CCCCCcccc
Q 003426 200 KNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFG--WDTYDSFMQ 277 (821)
Q Consensus 200 ~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~--~~~~~~~~Q 277 (821)
+|.-|.||+-++|-+|.|+..+|+.+-+.- ....++...|...+.+.+. .+.+......-+ -.......-
T Consensus 6 ~N~~aLCWLDciLsaLVh~~~Lk~~~~~~~-----~~e~s~~~~L~~~Y~qa~~---ll~~~q~~~~~~~~~~~~~~~~l 77 (275)
T PF15499_consen 6 KNSNALCWLDCILSALVHLESLKNAVTELC-----SKEESVFWRLFTKYNQANK---LLHTCQLDGVKDDDCKKVPSEIL 77 (275)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHhhhc-----cccccHHHHHHHHHHHHHH---HHHhhhhcCCCCcccccCchHHH
Confidence 688899999999999999999999995421 2233444444433332211 111100000000 000000001
Q ss_pred CcHHHHHH----HHHHHHHHHhcCC------c---------ccccccccceeEEeeEEEEeccCceeeee--eeeeeEEE
Q 003426 278 HDVQELNR----VLCEKLEDKMKGT------V---------VEGTIQQLFEGHHMNYIECINVDYKSTRK--ESFYDLQL 336 (821)
Q Consensus 278 ~Da~Ef~~----~Lld~Le~~~~~~------~---------~~~~i~~lF~g~~~~~i~C~~c~~~s~~~--e~f~~l~l 336 (821)
.+|..-+. .+++.|.-.++-+ + .+..+.++|.-.+.=.-.|..||+..... -.....+-
T Consensus 78 ~~ae~~Ln~vR~~iF~~LqPkL~C~LG~~ESPVFAlPLLLk~d~~~E~lF~~sf~WeFeC~~Cg~~~~~R~~K~L~TFtn 157 (275)
T PF15499_consen 78 AKAETCLNEVRMEIFIQLQPKLRCKLGDMESPVFALPLLLKLDPWIEKLFLYSFSWEFECSQCGHKYQNRCTKTLVTFTN 157 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCccCCCCCCCccCcHHHhHHHHhcchHHHhHhheeeEEEEEccccCChhhhhheeeecccCC
Confidence 11222222 2333333332211 0 24467889998888889999999865421 11111111
Q ss_pred eeCCCCCHHHHHHHhhhhecccCCCccccccCCeeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCcccc
Q 003426 337 DVKGCRDVYASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLD 416 (821)
Q Consensus 337 ~v~~~~~l~esL~~~~~~E~l~g~n~y~c~~c~~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~Ld 416 (821)
.++.-..|. ....--|.+|+.....+++.+.++|+++++|+- .| .|.. |
T Consensus 158 v~pdwhPLn-------------A~h~~pCn~C~~ksQ~rkMvlekv~~vfmLHFV-------eG----------LP~n-d 206 (275)
T PF15499_consen 158 VIPDWHPLN-------------AVHFGPCNSCNSKSQRRKMVLEKVPPVFMLHFV-------EG----------LPHN-D 206 (275)
T ss_pred CCCCCCccc-------------ccccCCCcccCChHHhHhhhhhcCchhhhhhhh-------cc----------CCcc-C
Confidence 122222222 222235999988888899999999999999973 11 1222 2
Q ss_pred CCccCCCCCCCCcCCCCCccEEEeEEEEEeecCCCccEEEEEEeCCCCCEEEeeCCc
Q 003426 417 LDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDER 473 (821)
Q Consensus 417 l~~~~~~~l~~~~~~~~~~~Y~L~gVIvH~G~~~~GHY~ayir~~~~~~W~~fnD~~ 473 (821)
+..|.-. -....|++.+||-+.- +--|++++|++. +|.|.++||-+
T Consensus 207 l~~ysF~--------feg~~Y~Vt~VIQY~~--~~~HFvtWi~~~-dGsWLecDDLk 252 (275)
T PF15499_consen 207 LQHYSFH--------FEGCLYQVTSVIQYQA--NLNHFVTWIRDS-DGSWLECDDLK 252 (275)
T ss_pred CCcccee--------ecCeeEEEEEEEEEec--cCceeEEEEEcC-CCCeEeeccCC
Confidence 2111101 1246799999998864 467999999997 88999999954
No 59
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.02 E-value=2.4e-05 Score=85.13 Aligned_cols=122 Identities=44% Similarity=0.760 Sum_probs=98.6
Q ss_pred EEEEEcCccccCCCeeecCcEEEcceEEEEEEEECCCCCCcEEEEEEecCCCCCCCCceEEEEEEEEEEecCCCce-eee
Q 003426 55 FTWTIENFSRLNTKKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADSGTLPYGWSRYAQFSLAVVNQIHSKY-SIR 133 (821)
Q Consensus 55 ~tw~I~n~S~l~~~~~~Sp~f~vgg~~W~I~~yP~G~~~~~lSvyL~~~~~~~~~~~W~v~a~f~l~L~n~~~~~~-~~~ 133 (821)
++|.|.+++... ..++|..|..||..|++.+||.|+ ++|.|+...... +|.+.|.+.|.+.|+..... ...
T Consensus 6 ~~~~~~~~~~~~-l~~ys~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~l~v~n~~~~~~~~~~ 77 (297)
T KOG1987|consen 6 FTWVISNFSSVG-LVIYSNGFVKGGCKWRLSAYPKGN---YLSLTLSVSDSP----GWERYAKLRLTVVNQKSEKYLSTV 77 (297)
T ss_pred cceeeccCcchh-hhccccceeecCceEEEEEecCCC---EEEEEEEeccCC----CcceeEEEEEEEccCCCcceeeee
Confidence 349999999988 789999999999999999999996 788888876443 79999999999999987653 333
Q ss_pred eccceeec--CCCCCceeccccCCCcccCCCCCccccccceeeeeeeeeeccc
Q 003426 134 KDTQHQFN--ARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKVLD 184 (821)
Q Consensus 134 ~~~~~~F~--~~~~dwG~~~Fi~~~~L~~~~~gfl~dD~l~I~~~V~v~~~~~ 184 (821)
......|. .....||+..+++...+.++..||+.++.+.+.+.+.|.+...
T Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~ 130 (297)
T KOG1987|consen 78 EEGFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAMG 130 (297)
T ss_pred eeeEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeeec
Confidence 22333333 3367899999999999988889999998888888877777544
No 60
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.0063 Score=71.37 Aligned_cols=99 Identities=24% Similarity=0.263 Sum_probs=59.4
Q ss_pred ccCCCcccchhhHHHHhhccHhHHHHHhcCCCCCC---------CCCCCCHHHHHHHHHHHHhc---C---CC--cccch
Q 003426 199 LKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTEN---------DLPSGSIPLALQSLFYKLQY---N---DT--SVATK 261 (821)
Q Consensus 199 L~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~~---------~~~~~~~~~~Lq~Lf~~l~~---s---~~--~v~~~ 261 (821)
|.|.||+||.||+||+|+.+|+|+-.+..++..-. ....+...+..+++-.-+.. . .. ..+..
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 113 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSSSNESFNLSVT 113 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCCccccccchHH
Confidence 99999999999999999999999987755432110 11111111222222211111 0 01 11223
Q ss_pred hHHHhhC-----CCCCCccccCcHHHHHHHHHHHHHHHhcC
Q 003426 262 ELTKSFG-----WDTYDSFMQHDVQELNRVLCEKLEDKMKG 297 (821)
Q Consensus 262 ~l~~~~~-----~~~~~~~~Q~Da~Ef~~~Lld~Le~~~~~ 297 (821)
.+...+. ...+....|+|+++++..|+-.+...+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~~~ 154 (587)
T KOG1864|consen 114 QLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVMGV 154 (587)
T ss_pred HHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhccc
Confidence 3333332 13466678999999999999999887764
No 61
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.011 Score=69.76 Aligned_cols=191 Identities=16% Similarity=0.242 Sum_probs=106.1
Q ss_pred CcHHHHHHHHHHHHHHHhcCC--------------------cccccccccceeEEeeEEEEeccCceeeee-eeeeeEEE
Q 003426 278 HDVQELNRVLCEKLEDKMKGT--------------------VVEGTIQQLFEGHHMNYIECINVDYKSTRK-ESFYDLQL 336 (821)
Q Consensus 278 ~Da~Ef~~~Lld~Le~~~~~~--------------------~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~-e~f~~l~l 336 (821)
.++.+++..++..|++....+ ...+..+++|+-.......|..|...+..- ..-+.+.+
T Consensus 550 ~~~S~lL~~ll~~l~~~~~~ss~~~~v~~aile~~~~Wk~~er~~l~~~lf~l~~~e~~Sc~~cr~~~n~peqsS~~~~~ 629 (806)
T KOG1887|consen 550 GVYSELLSDLLLSLEEVHNASSSAADVVVAILEFWQCWKNPERESLVNRLFTLEEKERMSCSKCRRDLNYPEQSSYGIVI 629 (806)
T ss_pred hhHHHHHHHHHhhhHHHhhhcchhhHHHHHHHhcccccccHHHHHHHHhhhhhhhhhhccccccccCCCCcchhhhhhhc
Confidence 345556666666665544322 234567788988888888999998765532 22222222
Q ss_pred eeCCCCCHHHHHHHhhhhecc---cCCCccccc----cCCeeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCc--
Q 003426 337 DVKGCRDVYASFDKYVEVERL---EGDNKYHAE----EHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKIND-- 407 (821)
Q Consensus 337 ~v~~~~~l~esL~~~~~~E~l---~g~n~y~c~----~c~~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~-- 407 (821)
.......+.-++++....+.+ .-..+..|+ +||+.. .....|..+|++.+|.|.- ++....|...
T Consensus 630 ~a~slr~~k~a~~n~~f~~ilk~i~m~~~m~cD~~~gGCgk~n-~v~h~is~~P~vftIvlew-----Ek~ETe~eI~~T 703 (806)
T KOG1887|consen 630 AADSLRQLKCAFQNITFEDILKNIRMNDKMLCDKETGGCGKAN-LVHHILSPCPPVFTIVLEW-----EKSETEKEISET 703 (806)
T ss_pred cchhhhhHHHHhhhhhHHHHHHHhhhhhhhcccccCCCCcchh-hhhhhcCCCCCeeEeeeeh-----hcccchHHHHHH
Confidence 222222333333222222211 111223353 376543 3344577899999996642 2233333221
Q ss_pred eEeCCccccCCccCCCCCCCCcCCCCCccEEEeEEEEEeecCCCccEEEEEEeCCCCCEE--EeeCCceeEcc-hHhHHH
Q 003426 408 RYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWY--KFDDERVTKED-VKRALE 484 (821)
Q Consensus 408 ~v~fP~~Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVIvH~G~~~~GHY~ayir~~~~~~W~--~fnD~~V~~v~-~~~v~~ 484 (821)
...+..++|+. .... ........|+|+++|.-... +++|.|+... .++|. +.+|..+..+. |.+|+.
T Consensus 704 ~~aL~teidis----~~y~--~g~ep~t~yrLVSmv~~~e~--~~~~~C~Aye--~Nrwvs~r~~~~~~e~iG~w~dvvr 773 (806)
T KOG1887|consen 704 TKALATEIDIS----RLYR--EGLEPNTKYRLVSMVGNHEE--GEEYICFAYE--PNRWVSLRHEDSQGEVVGDWKDVVR 773 (806)
T ss_pred HHHHHhhhhHH----HHhh--hccCcCceeEEEEEeeeccc--cceEEEeecc--CCcchhhHHHHHHhhhccchHHHHH
Confidence 12245557772 2222 11234578999999976544 7899999998 56676 99998877664 666655
No 62
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=93.07 E-value=0.15 Score=42.70 Aligned_cols=56 Identities=27% Similarity=0.390 Sum_probs=42.8
Q ss_pred EEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEE
Q 003426 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIIC 772 (821)
Q Consensus 709 ~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~ 772 (821)
++.|.++.+++.|+...++..|+|+++.+.|+= + + +.++++.|+...+|.+||+|=
T Consensus 14 ~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~f----d-G---~~L~~~~T~~~~~ied~d~Id 69 (72)
T PF11976_consen 14 KFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIF----D-G---KRLDPNDTPEDLGIEDGDTID 69 (72)
T ss_dssp EEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEE----T-T---EEE-TTSCHHHHT-STTEEEE
T ss_pred EEEECCCCcHHHHHHHHHHhhCCCccceEEEEE----C-C---EEcCCCCCHHHCCCCCCCEEE
Confidence 567889999999999999999999965555431 1 1 356778899999999999973
No 63
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=92.90 E-value=0.31 Score=52.91 Aligned_cols=100 Identities=13% Similarity=0.147 Sum_probs=54.1
Q ss_pred CCCcccccccCCCcccchhhHHHHhhccHh-HHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhHHHhhC-
Q 003426 191 KKETGYVGLKNQGATCYMNSLLQTLYHIPY-FRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFG- 268 (821)
Q Consensus 191 k~~~g~~GL~N~GnTCYlNS~LQ~L~~~p~-fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~- 268 (821)
....|++=|+=.-|.||+||++=+|=++.. |+ .-+++.++.++..++ +..|..-+=
T Consensus 97 ~~~~g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~------------------~~~l~~aw~~f~~G~----~~~fVa~~Ya 154 (320)
T PF08715_consen 97 VVVNGFRVLKQSDNNCWVNAACLQLQALKIKFK------------------SPGLDEAWNEFKAGD----PAPFVAWCYA 154 (320)
T ss_dssp EEETTEEEE---TTTHHHHHHHHHHTTST--BS------------------SHHHHHHHHHHHTT------HHHHHHHHH
T ss_pred EEECCEEEEEecCCCcHHHHHHHHHHhcCCccC------------------CHHHHHHHHHHhCCC----hHHHHHHHHH
Confidence 345677888888899999999866643321 21 125666666666554 333333221
Q ss_pred CCCCCccccCcHHHHHHHHHHHHHHHhcCCcccccccccceeEEeeEEEEeccCcee
Q 003426 269 WDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKS 325 (821)
Q Consensus 269 ~~~~~~~~Q~Da~Ef~~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s 325 (821)
......++-.||++++..|+..+... ....+.....|..||...
T Consensus 155 ~~~~~~G~~gDa~~~L~~ll~~~~~~-------------~~~~~~~~~~~c~CG~k~ 198 (320)
T PF08715_consen 155 STNAKKGDPGDAEYVLSKLLKDADLD-------------YSVTMTKLEVCCGCGVKQ 198 (320)
T ss_dssp HTT--TTS---HHHHHHHHHTTB-TT-------------T-EEEEEEEEECTTEEEE
T ss_pred HcCCCCCCCcCHHHHHHHHHHhcccc-------------ceEEEEEeeeeccCCcce
Confidence 12345668899999999998765422 223444556788898553
No 64
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=92.21 E-value=0.72 Score=47.57 Aligned_cols=121 Identities=15% Similarity=0.208 Sum_probs=68.0
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCC---ceEEEEEeecC-CCCCCCCCCCCCcchhchHHHHHhhhccccccceeEE
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQ---LQRFWIWAKRQ-NHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLF 668 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~---~~r~w~~~~~~-n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (821)
...+.|+|+.|+.+|.+.+++.++++.+ .+|+|-....+ .+...++. ++..+.+ . ..++
T Consensus 35 ~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~---------~i~~l~~-------~-~~~r 97 (213)
T PF14533_consen 35 EYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDE---------PISSLND-------Y-ITLR 97 (213)
T ss_dssp EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTS---------BGGGS---------T-TEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCC---------chhhccC-------c-ceee
Confidence 3467999999999999999999998765 69999763211 11222332 2333311 1 1488
Q ss_pred EEeecCCCCCCCCCCCCCCCcEEEEEEeecCCCCeEEEe-EEEEEecCCChHHHHHHHHHHcCCCC
Q 003426 669 LEVEFGPDLHPIAPPDKSKDDILLFFKLYDPEKGELRYV-GRLFLKSSSKPIEILRKLNQMAGFDP 733 (821)
Q Consensus 669 ~e~~~~~~~~~~~~~~~~~~~~l~flK~fd~~~~~l~~~-g~~~~~~~~~v~~l~~~i~~~~g~p~ 733 (821)
+|..+..+... .....++.+|.+-+|..+.....|+ =-+.|....+++++..-|.+++|+|.
T Consensus 98 ~E~ip~ee~~~---~~~~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ 160 (213)
T PF14533_consen 98 IEEIPEEELNL---DDESEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSD 160 (213)
T ss_dssp EEE--GGGSS-----TT--TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---H
T ss_pred eecCChHHhhc---ccccccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCCh
Confidence 88765433221 1012245899999998888887774 45566899999999999999999986
No 65
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=92.18 E-value=0.3 Score=42.02 Aligned_cols=62 Identities=15% Similarity=0.229 Sum_probs=37.5
Q ss_pred EeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCcccccccc--CccCcccccccCCCCEEEE
Q 003426 706 YVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHL--DKRTSFRLSQIEDGDIICF 773 (821)
Q Consensus 706 ~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i--~~~~t~~~~el~~GDIi~f 773 (821)
|.-.+-++.++++++|...|.+.+++|.+ .+.||-+- .+. +.+ ....|+.+..|.+||+|-.
T Consensus 14 G~~Rie~~~~~t~~~L~~kI~~~l~~~~~-~~~L~~~~--~~~---~~l~s~~~~tl~~lglkHGdmlyL 77 (80)
T PF11543_consen 14 GMKRIEVSPSSTLSDLKEKISEQLSIPDS-SQSLSKDR--NNK---EELKSSDSKTLSSLGLKHGDMLYL 77 (80)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHS---TT-T---BSSG--GGG---GCSSS-TT-CCCCT---TT-EEE-
T ss_pred CCEEEEcCCcccHHHHHHHHHHHcCCCCc-ceEEEecC--CCC---cccccCCcCCHHHcCCCCccEEEE
Confidence 56667788999999999999999999987 67777655 222 223 4678999999999999853
No 66
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=90.08 E-value=0.13 Score=50.35 Aligned_cols=31 Identities=26% Similarity=0.244 Sum_probs=23.7
Q ss_pred CCCccEEEEEEeCCCCCEEEeeCCceeEcchHh
Q 003426 449 VHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKR 481 (821)
Q Consensus 449 ~~~GHY~ayir~~~~~~W~~fnD~~V~~v~~~~ 481 (821)
-..||-+.+.+. .+.||.+||+.+.+.++.-
T Consensus 136 ~g~~Havfa~~t--s~gWy~iDDe~~y~~tPdp 166 (193)
T PF05408_consen 136 KGQEHAVFACVT--SDGWYAIDDEDFYPWTPDP 166 (193)
T ss_dssp ESTTEEEEEEEE--TTCEEEEETTEEEE----G
T ss_pred cCCcceEEEEEe--eCcEEEecCCeeeeCCCCh
Confidence 346899999998 7999999999999987543
No 67
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=89.76 E-value=0.8 Score=40.00 Aligned_cols=73 Identities=19% Similarity=0.196 Sum_probs=55.4
Q ss_pred CCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccC
Q 003426 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (821)
Q Consensus 687 ~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~ 766 (821)
...|.||+|.= ...++. +-|..+.+++.|+..++++.|+|++.--.+|.= ..++++.|++..+++
T Consensus 9 ~~~i~I~v~~~--~g~~~~----~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G---------~~L~~~~T~~~l~m~ 73 (87)
T cd01763 9 SEHINLKVKGQ--DGNEVF----FKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDG---------QRIRDNQTPDDLGME 73 (87)
T ss_pred CCeEEEEEECC--CCCEEE----EEEcCCCHHHHHHHHHHHHhCCCccceEEEECC---------eECCCCCCHHHcCCC
Confidence 34466666543 334433 467899999999999999999999766556642 356778899999999
Q ss_pred CCCEEEEE
Q 003426 767 DGDIICFQ 774 (821)
Q Consensus 767 ~GDIi~fQ 774 (821)
+||+|-+-
T Consensus 74 d~d~I~v~ 81 (87)
T cd01763 74 DGDEIEVM 81 (87)
T ss_pred CCCEEEEE
Confidence 99999774
No 68
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=89.72 E-value=0.27 Score=55.06 Aligned_cols=92 Identities=13% Similarity=0.224 Sum_probs=48.0
Q ss_pred cccccCCCcccchhhHHHHhhccHhHHHHHh-cCCCCCCCCCCCCHHHHHHHHHHH-----Hhc-----CCCcccchhHH
Q 003426 196 YVGLKNQGATCYMNSLLQTLYHIPYFRKAVY-HMPTTENDLPSGSIPLALQSLFYK-----LQY-----NDTSVATKELT 264 (821)
Q Consensus 196 ~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~-~~~~~~~~~~~~~~~~~Lq~Lf~~-----l~~-----s~~~v~~~~l~ 264 (821)
+.|++-+-|.||+||.|-++|.-...-..++ .-|... ...-..++|.++.. |+. +........+.
T Consensus 368 ~kgiqgh~nscyldstlf~~f~f~sv~dS~l~rrp~p~----d~~nYse~q~~LRseiVnplr~n~fVr~~~~mklR~~l 443 (724)
T KOG3556|consen 368 IKGIQGHPNSCYLDSTLFKPFEFDSVTDSTLPRRPPPS----DSMNYSEMQHSLRSEIVNPLRRNQFVRQNPAMKLRVEL 443 (724)
T ss_pred cccccCCcchhhccccccccccccccccccccCCCCcc----cccccHHHHHHHHHhhhchhhhcceeecCHHHHHHHHH
Confidence 4677778899999999988876554433332 221111 11112244444321 111 11112222233
Q ss_pred HhhCCCCCCccccCcHHHHHHHHHHHH
Q 003426 265 KSFGWDTYDSFMQHDVQELNRVLCEKL 291 (821)
Q Consensus 265 ~~~~~~~~~~~~Q~Da~Ef~~~Lld~L 291 (821)
..+...+-..-+-.|+.||+..|+..+
T Consensus 444 dql~~~sG~tceekdpEEFLn~l~t~i 470 (724)
T KOG3556|consen 444 DQLNFRSGDTCEEKDPEEFLNGLKTLI 470 (724)
T ss_pred HhhhccccCcccccCHHHHHHHHHHHh
Confidence 344444445556778889888887765
No 69
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=89.17 E-value=0.51 Score=40.42 Aligned_cols=61 Identities=18% Similarity=0.301 Sum_probs=38.2
Q ss_pred EEEEecCCChHHHHHHHHHHcCCCCCCcEE--EEEeeccCccccccccCccCcccccccCCCCEEEE
Q 003426 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIE--LYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICF 773 (821)
Q Consensus 709 ~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~--lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~f 773 (821)
-+.++.+.+|++|+|.|.+.++.+....-. -|.=.+ .+- .+++++.|+.++.+.|||+|+-
T Consensus 16 Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~--~~g--~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 16 DLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLAR--AGG--RPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG---GGT--EEEETTSBCGGGT--TT-EEEE
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEe--cCC--cccCCcCcHhHcCCCCCCEEEe
Confidence 466789999999999999999986533211 122111 121 3789999999999999999975
No 70
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=88.65 E-value=0.25 Score=55.78 Aligned_cols=77 Identities=23% Similarity=0.426 Sum_probs=62.4
Q ss_pred CCCCcEEEEEEcCccccCC-------CeeecCcEEE--cceEEEEEEEECCCCC---CcEEEEEEecCCCCCCC-CceEE
Q 003426 49 DPPTMKFTWTIENFSRLNT-------KKHYSDVFVV--GGYKWRILIFPKGNNV---DHLSMYLDVADSGTLPY-GWSRY 115 (821)
Q Consensus 49 ~~~~~~~tw~I~n~S~l~~-------~~~~Sp~f~v--gg~~W~I~~yP~G~~~---~~lSvyL~~~~~~~~~~-~W~v~ 115 (821)
....|++.|+|.+|+..+. ..++|+.|+. .||.-+..+|-+|++. -++|+|+....++.++. .|...
T Consensus 276 ~~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf~ 355 (391)
T KOG0297|consen 276 RSYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPFR 355 (391)
T ss_pred hccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCCC
Confidence 3456999999999965432 5789999966 4999988888888743 48999999998776544 79999
Q ss_pred EEEEEEEEec
Q 003426 116 AQFSLAVVNQ 125 (821)
Q Consensus 116 a~f~l~L~n~ 125 (821)
-+.++.|++|
T Consensus 356 ~~v~~~l~dq 365 (391)
T KOG0297|consen 356 QKVTLMLLDQ 365 (391)
T ss_pred CceEEEEecc
Confidence 9999999999
No 71
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=87.79 E-value=1.9 Score=36.78 Aligned_cols=66 Identities=12% Similarity=0.158 Sum_probs=44.6
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCCCCCCCCCCCcchhchHHHHHhhhccccccceeEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLE 670 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 670 (821)
..+||+...++.+|+++|++.++++++.+.|+.-....+.- -++.+++++..+.++ .+.-+.||.+
T Consensus 13 IaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~s~~~----v~l~d~dle~aws~~-------~~~~lTLwC~ 78 (80)
T cd06406 13 VAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEASGED----VILSDTNMEDVWSQA-------KDGCLTLWCT 78 (80)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCCCCCc----cCcChHHHHHHHHhh-------cCCeEEEEEe
Confidence 46799999999999999999999999999997644333221 233333333333333 2345788876
No 72
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=84.80 E-value=3.3 Score=36.06 Aligned_cols=67 Identities=18% Similarity=0.187 Sum_probs=50.4
Q ss_pred EEEEecCCChHHHHHHHHHHcCCCCCCcEEEEE-eeccCccccccccCccCcccccccCCCCEEEEEeCC
Q 003426 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYE-EIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSP 777 (821)
Q Consensus 709 ~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyE-Eik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~~~ 777 (821)
-.-++.+.+|++|...|..+.|.|++.....+. .- ....++...+...++....+.||++|-+.-..
T Consensus 17 ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~--~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D~~ 84 (87)
T PF14560_consen 17 EKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDK--DDSKIEELDDDDATLGSYGIKDGMRIHVVDTN 84 (87)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TS--SSSEEEESSGSSSBCCHHT-STTEEEEEEE-T
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecC--CCccccccCCCccEeecCCCCCCCEEEEEeCC
Confidence 366789999999999999999999988855554 33 34555455566889999999999999987654
No 73
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=84.10 E-value=2.4 Score=34.87 Aligned_cols=57 Identities=19% Similarity=0.356 Sum_probs=47.6
Q ss_pred EEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEEE
Q 003426 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQ 774 (821)
Q Consensus 709 ~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ 774 (821)
.+-|+.+.+|.+|...|.+..|+|++....+|. +. .++...|+....|.+|++|..-
T Consensus 9 ~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~------G~---~L~d~~tL~~~~i~~~~~I~l~ 65 (69)
T PF00240_consen 9 TLEVDPDDTVADLKQKIAEETGIPPEQQRLIYN------GK---ELDDDKTLSDYGIKDGSTIHLV 65 (69)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTSTGGGEEEEET------TE---EESTTSBTGGGTTSTTEEEEEE
T ss_pred EEEECCCCCHHHhhhhcccccccccccceeeee------ee---cccCcCcHHHcCCCCCCEEEEE
Confidence 356789999999999999999999988777773 22 3578889999999999998764
No 74
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=83.66 E-value=3.5 Score=34.74 Aligned_cols=69 Identities=16% Similarity=0.328 Sum_probs=50.6
Q ss_pred EEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCC--CCCCcEEEEEeeccCccccccccCccCcccccccCCCC
Q 003426 692 LFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGF--DPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (821)
Q Consensus 692 ~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~--p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GD 769 (821)
+|+|..+-. +. .+.+..+.+|++|...|.+..|+ |++..-.+|. + ..++.+.++....+.+||
T Consensus 3 i~vk~~~g~--~~----~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~------G---~~L~d~~~L~~~~i~~~~ 67 (77)
T cd01805 3 ITFKTLKQQ--TF----PIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYS------G---KILKDDTTLEEYKIDEKD 67 (77)
T ss_pred EEEEeCCCC--EE----EEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEEC------C---EEccCCCCHHHcCCCCCC
Confidence 566665433 21 34578889999999999999999 7766555543 2 245667899999999999
Q ss_pred EEEEEe
Q 003426 770 IICFQK 775 (821)
Q Consensus 770 Ii~fQ~ 775 (821)
.|..-.
T Consensus 68 ~i~~~~ 73 (77)
T cd01805 68 FVVVMV 73 (77)
T ss_pred EEEEEE
Confidence 887654
No 75
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=82.60 E-value=1.6 Score=36.50 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=30.3
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+.+..++|+.+|+++|++..|+|++++|||.
T Consensus 12 ~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~ 44 (71)
T cd01796 12 FSLDVDPDLELENFKALCEAESGIPASQQQLIY 44 (71)
T ss_pred EEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEE
Confidence 467888999999999999999999999999985
No 76
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=81.89 E-value=3.6 Score=34.01 Aligned_cols=67 Identities=15% Similarity=0.271 Sum_probs=51.0
Q ss_pred EEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCE
Q 003426 691 LLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDI 770 (821)
Q Consensus 691 l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDI 770 (821)
-||+|..+-..- .+.+..+.+|++|...|.+..|+|++..-.+|. + ..++...++....+.+|+.
T Consensus 2 ~i~vk~~~g~~~------~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~------g---~~L~d~~~L~~~~i~~~~~ 66 (72)
T cd01809 2 EIKVKTLDSQTH------TFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYS------G---RVLKDDETLSEYKVEDGHT 66 (72)
T ss_pred EEEEEeCCCCEE------EEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC------C---EECCCcCcHHHCCCCCCCE
Confidence 467777654322 356778899999999999999999887655552 2 3466778999999999998
Q ss_pred EE
Q 003426 771 IC 772 (821)
Q Consensus 771 i~ 772 (821)
|-
T Consensus 67 l~ 68 (72)
T cd01809 67 IH 68 (72)
T ss_pred EE
Confidence 74
No 77
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=81.86 E-value=1.8 Score=36.46 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=30.2
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
.++.|..++|+++++++|++..|+|++++|||.
T Consensus 11 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~ 43 (74)
T cd01793 11 HTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLL 43 (74)
T ss_pred EEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEE
Confidence 467888899999999999999999999999985
No 78
>PTZ00044 ubiquitin; Provisional
Probab=81.85 E-value=1.9 Score=36.34 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=30.9
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..++++..++|+.+|+++|++..|+|++++|||.
T Consensus 12 ~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~ 45 (76)
T PTZ00044 12 KQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIY 45 (76)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEE
Confidence 3467899999999999999999999999999983
No 79
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=81.57 E-value=1.8 Score=35.80 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=30.0
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+++..++|+.+|+++|++..|++++++||+.
T Consensus 12 ~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~ 44 (71)
T cd01812 12 HDLSISSQATFGDLKKMLAPVTGVEPRDQKLIF 44 (71)
T ss_pred EEEEECCCCcHHHHHHHHHHhhCCChHHeEEee
Confidence 457888999999999999999999999999974
No 80
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=81.55 E-value=1.8 Score=36.14 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=30.0
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
.++.+..++|+.+++++|++..|+|++++|||.
T Consensus 11 ~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~ 43 (70)
T cd01794 11 VKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFF 43 (70)
T ss_pred EEEEECCcChHHHHHHHHHHHhCCCHHHeEEEE
Confidence 457888899999999999999999999999984
No 81
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=81.33 E-value=2.5 Score=44.69 Aligned_cols=37 Identities=14% Similarity=0.284 Sum_probs=27.9
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEEEEEee
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAK 629 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~~~~ 629 (821)
...+.+.+.++..++.+.||+.+|++|+.+|||....
T Consensus 191 ~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~~~~ 227 (249)
T PF12436_consen 191 EFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFTVNP 227 (249)
T ss_dssp -EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE---T
T ss_pred CEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEecc
Confidence 4567899999999999999999999999999999754
No 82
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=81.23 E-value=1.9 Score=36.35 Aligned_cols=31 Identities=13% Similarity=0.089 Sum_probs=28.2
Q ss_pred EEEeeccccHHHHHHHHHHHhCCCCCceEEE
Q 003426 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w 625 (821)
.+.+..++|+.+|+++|++..|++++++||-
T Consensus 15 ~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi 45 (73)
T cd01791 15 RVKCNPDDTIGDLKKLIAAQTGTRPEKIVLK 45 (73)
T ss_pred EEEeCCCCcHHHHHHHHHHHhCCChHHEEEE
Confidence 4578889999999999999999999999994
No 83
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=80.83 E-value=3.6 Score=34.53 Aligned_cols=68 Identities=12% Similarity=0.147 Sum_probs=50.9
Q ss_pred EEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCE
Q 003426 691 LLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDI 770 (821)
Q Consensus 691 l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDI 770 (821)
-||+|..+-. ++ .+-|..+.+|.+|...|.+..|+|++..-.+|.- ..++...++....|++|+.
T Consensus 2 ~i~vk~~~G~--~~----~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G---------~~L~d~~~L~~~~i~~~~~ 66 (74)
T cd01807 2 FLTVKLLQGR--EC----SLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKG---------KALADDKRLSDYSIGPNAK 66 (74)
T ss_pred EEEEEeCCCC--EE----EEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECC---------EECCCCCCHHHCCCCCCCE
Confidence 3666766533 22 2357889999999999999999999776555542 2356678999999999998
Q ss_pred EEE
Q 003426 771 ICF 773 (821)
Q Consensus 771 i~f 773 (821)
|..
T Consensus 67 l~l 69 (74)
T cd01807 67 LNL 69 (74)
T ss_pred EEE
Confidence 843
No 84
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=80.73 E-value=2.3 Score=36.09 Aligned_cols=33 Identities=18% Similarity=0.410 Sum_probs=30.3
Q ss_pred cceEEEeeccccHHHHHHHHHHHhCCCCCceEE
Q 003426 592 KVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRF 624 (821)
Q Consensus 592 ~~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~ 624 (821)
...++.+..++|+.+++++|.+..|+|++++||
T Consensus 13 ~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL 45 (75)
T cd01799 13 VTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW 45 (75)
T ss_pred CeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE
Confidence 455789999999999999999999999999999
No 85
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=80.27 E-value=4.6 Score=33.73 Aligned_cols=57 Identities=12% Similarity=0.310 Sum_probs=45.5
Q ss_pred EEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEEEe
Q 003426 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQK 775 (821)
Q Consensus 710 ~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~ 775 (821)
+-++.+.+|++|...|.+..|+|++..-.+|. + ..++...|+....+++|+.|-+-.
T Consensus 15 ~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~------g---~~L~d~~tl~~~~i~~g~~i~l~~ 71 (76)
T cd01806 15 IDIEPTDKVERIKERVEEKEGIPPQQQRLIYS------G---KQMNDDKTAADYKLEGGSVLHLVL 71 (76)
T ss_pred EEECCCCCHHHHHHHHhHhhCCChhhEEEEEC------C---eEccCCCCHHHcCCCCCCEEEEEE
Confidence 45788999999999999999999987555553 2 235567899999999999886654
No 86
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=80.17 E-value=2.3 Score=35.77 Aligned_cols=33 Identities=21% Similarity=0.413 Sum_probs=30.0
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+.|..++|+.+|+++|++..|++++++||+.
T Consensus 13 ~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~ 45 (74)
T cd01807 13 CSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLF 45 (74)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEE
Confidence 467888999999999999999999999999973
No 87
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=80.02 E-value=3.5 Score=34.38 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=44.5
Q ss_pred EEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccC-ccCcccccccCCCCEEEE
Q 003426 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLD-KRTSFRLSQIEDGDIICF 773 (821)
Q Consensus 709 ~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~-~~~t~~~~el~~GDIi~f 773 (821)
.+-|+.+.+|++|...|.+.-|+|++....+|.-- .++ ...+++...+++||.|..
T Consensus 13 ~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk---------~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 13 SLDVDPDLELENFKALCEAESGIPASQQQLIYNGR---------ELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred EEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCe---------EccCCcccHHHcCCCCCCEEEE
Confidence 36678899999999999999999998876666421 233 346888999999999875
No 88
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=79.80 E-value=2.9 Score=34.62 Aligned_cols=53 Identities=11% Similarity=0.248 Sum_probs=43.1
Q ss_pred EEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEE
Q 003426 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDII 771 (821)
Q Consensus 710 ~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi 771 (821)
+-+..+.+|+++...|.+..|+|++..-.+|. + ..++...++....+++|++|
T Consensus 13 ~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~------G---~~L~d~~~l~~~~i~~~stl 65 (70)
T cd01798 13 VEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFA------G---KELRNTTTIQECDLGQQSIL 65 (70)
T ss_pred EEECCCChHHHHHHHHHHHHCCCHHHeEEEEC------C---eECCCCCcHHHcCCCCCCEE
Confidence 46788999999999999999999876554443 2 24677789999999999987
No 89
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=79.79 E-value=2.3 Score=35.32 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=30.0
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+.+..++|+.++++.|++..|+|++++|||.
T Consensus 11 ~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~ 43 (70)
T cd01798 11 FPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIF 43 (70)
T ss_pred EEEEECCCChHHHHHHHHHHHHCCCHHHeEEEE
Confidence 457888999999999999999999999999974
No 90
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=78.32 E-value=3.8 Score=34.38 Aligned_cols=57 Identities=7% Similarity=0.098 Sum_probs=45.3
Q ss_pred EEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEEEe
Q 003426 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQK 775 (821)
Q Consensus 710 ~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~ 775 (821)
+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++...|+....+++|+.|-.-.
T Consensus 13 l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~------G---~~L~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01810 13 YEVQLTQTVATLKQQVSQRERVQADQFWLSFE------G---RPMEDEHPLGEYGLKPGCTVFMNL 69 (74)
T ss_pred EEECCcChHHHHHHHHHHHhCCCHHHeEEEEC------C---EECCCCCCHHHcCCCCCCEEEEEE
Confidence 56788899999999999999999977655542 2 235567899999999999986543
No 91
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=78.19 E-value=3 Score=33.39 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=29.5
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..++|..++|+.+|++.|++.+|+++++++|+.
T Consensus 12 ~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~ 44 (64)
T smart00213 12 ITLEVKPSDTVSELKEKIAELTGIPVEQQRLIY 44 (64)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 457888899999999999999999999999864
No 92
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=78.15 E-value=3 Score=34.89 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=29.9
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+++..+.|+.+|+++|++..|+|++++||+.
T Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~ 45 (76)
T cd01806 13 IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (76)
T ss_pred EEEEECCCCCHHHHHHHHhHhhCCChhhEEEEE
Confidence 357888999999999999999999999999983
No 93
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=78.13 E-value=2.7 Score=35.20 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=29.9
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+.+..++|+.+|+++|++..|+|++++|||.
T Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~ 45 (76)
T cd01803 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_pred EEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEE
Confidence 357888899999999999999999999999984
No 94
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=77.90 E-value=4.8 Score=33.63 Aligned_cols=57 Identities=14% Similarity=0.256 Sum_probs=45.0
Q ss_pred EEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEEEe
Q 003426 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQK 775 (821)
Q Consensus 710 ~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~ 775 (821)
+.+..+.+|++|...|.++.|+|++..-.+|. + ..++...++....+++|+.|..-.
T Consensus 15 ~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~------g---~~L~d~~~L~~~~i~~~~~i~l~~ 71 (76)
T cd01803 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQKESTLHLVL 71 (76)
T ss_pred EEECCcCcHHHHHHHHHHHhCCCHHHeEEEEC------C---EECCCCCcHHHcCCCCCCEEEEEE
Confidence 57888999999999999999999876544442 2 235667899999999999887644
No 95
>PTZ00044 ubiquitin; Provisional
Probab=77.72 E-value=5.1 Score=33.64 Aligned_cols=69 Identities=12% Similarity=0.194 Sum_probs=51.0
Q ss_pred EEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEE
Q 003426 692 LFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDII 771 (821)
Q Consensus 692 ~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi 771 (821)
||+|..+-.+- .+.+..+.+|++|...|.++.|+|++..-.+|.- ..++...+++...+++|+.|
T Consensus 3 i~vk~~~G~~~------~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g---------~~L~d~~~l~~~~i~~~~~i 67 (76)
T PTZ00044 3 ILIKTLTGKKQ------SFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSG---------KQMSDDLKLSDYKVVPGSTI 67 (76)
T ss_pred EEEEeCCCCEE------EEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECC---------EEccCCCcHHHcCCCCCCEE
Confidence 56666544322 2456788999999999999999999876666632 23567778999999999988
Q ss_pred EEEe
Q 003426 772 CFQK 775 (821)
Q Consensus 772 ~fQ~ 775 (821)
-.-.
T Consensus 68 ~l~~ 71 (76)
T PTZ00044 68 HMVL 71 (76)
T ss_pred EEEE
Confidence 7643
No 96
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=77.26 E-value=4.8 Score=35.00 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=30.9
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEEEEE
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIW 627 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~~ 627 (821)
....|+++++|+.+|+.+|...+|++++.+||-.+
T Consensus 15 ~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~ 49 (87)
T PF14560_consen 15 SVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLK 49 (87)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEE
Confidence 34679999999999999999999999999999775
No 97
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=77.22 E-value=3.4 Score=35.79 Aligned_cols=36 Identities=11% Similarity=0.242 Sum_probs=31.9
Q ss_pred EEEeeccccHHHHHHHHHHHhCCCCCceEEEEEeec
Q 003426 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKR 630 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~~~~~ 630 (821)
..|+++++|+.+|++++...+|+++..+||..+..+
T Consensus 16 ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~ 51 (84)
T cd01789 16 EKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGD 51 (84)
T ss_pred eEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCC
Confidence 458999999999999999999999999999776544
No 98
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=76.39 E-value=3.4 Score=34.13 Aligned_cols=34 Identities=35% Similarity=0.686 Sum_probs=30.5
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
...+++..+.|+.+|+++|++..|++++++||+.
T Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~ 45 (72)
T cd01809 12 THTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIY 45 (72)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 3467888899999999999999999999999985
No 99
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=76.19 E-value=4.2 Score=33.38 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=30.0
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+.|..+.|+.+|++.|++..|+|++.++|-.
T Consensus 8 ~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~ 40 (69)
T PF00240_consen 8 FTLEVDPDDTVADLKQKIAEETGIPPEQQRLIY 40 (69)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEE
T ss_pred EEEEECCCCCHHHhhhhcccccccccccceeee
Confidence 467889999999999999999999999999854
No 100
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=75.02 E-value=3.8 Score=34.10 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=28.9
Q ss_pred EEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
++.+..++|+.+|+++|++..|++++++||+.
T Consensus 13 ~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~ 44 (71)
T cd01808 13 EIEIAEDASVKDFKEAVSKKFKANQEQLVLIF 44 (71)
T ss_pred EEEECCCChHHHHHHHHHHHhCCCHHHEEEEE
Confidence 67888899999999999999999999999864
No 101
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=74.73 E-value=3.9 Score=34.56 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=30.8
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
...+.+..++|+.+|+++|.+..|+|+++++|+.
T Consensus 9 ~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~ 42 (76)
T cd01800 9 MLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQY 42 (76)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 4467888999999999999999999999999985
No 102
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=74.41 E-value=4.8 Score=35.09 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=31.4
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
...++|.+++++..|++++++..|++++++||+.
T Consensus 23 ~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f 56 (87)
T cd01763 23 EVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLF 56 (87)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEE
Confidence 4478999999999999999999999999999986
No 103
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=73.58 E-value=3.8 Score=34.94 Aligned_cols=32 Identities=13% Similarity=0.257 Sum_probs=28.7
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w 625 (821)
.++.+..++|+.+|+++|++..|++++++||-
T Consensus 14 ~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~ 45 (78)
T cd01804 14 FDLSVPPDETVEGLKKRISQRLKVPKERLALL 45 (78)
T ss_pred EEEEECCcCHHHHHHHHHHHHhCCChHHEEEE
Confidence 35788889999999999999999999999884
No 104
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=73.42 E-value=5.2 Score=32.43 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=29.2
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+++..++|+.+|++.|++.+|+++++++||.
T Consensus 10 ~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~ 42 (69)
T cd01769 10 FELEVSPDDTVAELKAKIAAKEGVPPEQQRLIY 42 (69)
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 356788899999999999999999999999854
No 105
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=73.02 E-value=6.1 Score=33.46 Aligned_cols=59 Identities=14% Similarity=0.070 Sum_probs=44.7
Q ss_pred eEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccC-CCCEEEEE
Q 003426 707 VGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE-DGDIICFQ 774 (821)
Q Consensus 707 ~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~-~GDIi~fQ 774 (821)
.-.+.|..+.+|++|...|.+..|+|++..-. |. .. ...+...|+....++ +||++--+
T Consensus 14 t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~-----G~---~L~dD~~tL~~ygi~~~g~~~~l~ 73 (75)
T cd01799 14 TIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VI-----GQ---RLARDQETLYSHGIRTNGDSAFLY 73 (75)
T ss_pred eEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-Ec-----CC---eeCCCcCCHHHcCCCCCCCEEEEE
Confidence 33467788999999999999999999987644 42 11 124567899999999 88987543
No 106
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=72.93 E-value=11 Score=34.18 Aligned_cols=74 Identities=15% Similarity=0.199 Sum_probs=55.8
Q ss_pred CCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccC
Q 003426 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (821)
Q Consensus 687 ~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~ 766 (821)
.+.+-||+|..+-.+-. +.|..+.+|++|...|.++-|+|++..-.+|.- ..++.+.+++...|+
T Consensus 25 ~~~M~I~Vk~l~G~~~~------leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~G---------k~L~D~~tL~dy~I~ 89 (103)
T cd01802 25 YDTMELFIETLTGTCFE------LRVSPFETVISVKAKIQRLEGIPVAQQHLIWNN---------MELEDEYCLNDYNIS 89 (103)
T ss_pred CCCEEEEEEcCCCCEEE------EEeCCCCcHHHHHHHHHHHhCCChHHEEEEECC---------EECCCCCcHHHcCCC
Confidence 34577888877644322 467889999999999999999999876655532 246777899999999
Q ss_pred CCCEEEEEe
Q 003426 767 DGDIICFQK 775 (821)
Q Consensus 767 ~GDIi~fQ~ 775 (821)
+|+.|-...
T Consensus 90 ~~stL~l~~ 98 (103)
T cd01802 90 EGCTLKLVL 98 (103)
T ss_pred CCCEEEEEE
Confidence 999886543
No 107
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=72.26 E-value=6.3 Score=38.92 Aligned_cols=36 Identities=28% Similarity=0.511 Sum_probs=21.3
Q ss_pred CCcccccccCCCcccchhhHHHHhhcc-HhHHHHHhc
Q 003426 192 KETGYVGLKNQGATCYMNSLLQTLYHI-PYFRKAVYH 227 (821)
Q Consensus 192 ~~~g~~GL~N~GnTCYlNS~LQ~L~~~-p~fr~~l~~ 227 (821)
.+..+.|+.|.+++||+||++|.+-.. .+|-+.+|.
T Consensus 29 ~~~eft~~PN~~dnCWlNaL~QL~~~~d~~~Fd~~Y~ 65 (193)
T PF05408_consen 29 GKMEFTGLPNNHDNCWLNALLQLFRYVDEPFFDWYYD 65 (193)
T ss_dssp ---EEE----SSSTHHHHHHHHHHHHHT-GTTHHHHT
T ss_pred cceEEecCCCCCCChHHHHHHHHHHHcCcccchhhcC
Confidence 344567999999999999999998653 345555554
No 108
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=71.81 E-value=5 Score=33.70 Aligned_cols=33 Identities=9% Similarity=0.140 Sum_probs=29.9
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEEE
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w 625 (821)
..++.+..++|+.+++++|++..|+|++++||+
T Consensus 10 ~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~ 42 (74)
T cd01810 10 SSIYEVQLTQTVATLKQQVSQRERVQADQFWLS 42 (74)
T ss_pred EEEEEECCcChHHHHHHHHHHHhCCCHHHeEEE
Confidence 346788899999999999999999999999997
No 109
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=71.22 E-value=14 Score=31.39 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=47.0
Q ss_pred EecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEEEeCC
Q 003426 712 LKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSP 777 (821)
Q Consensus 712 ~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~~~ 777 (821)
+..+.+|+++...|.+..|+|++..-.+|. + ..++...|++...|++|++|......
T Consensus 19 v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~------G---k~L~D~~tL~~y~i~~~~~i~l~~~~ 75 (78)
T cd01797 19 LSRLTKVEELREKIQELFNVEPECQRLFYR------G---KQMEDGHTLFDYNVGLNDIIQLLVRQ 75 (78)
T ss_pred cCCcCcHHHHHHHHHHHhCCCHHHeEEEeC------C---EECCCCCCHHHcCCCCCCEEEEEEec
Confidence 567899999999999999999987766663 2 24777889999999999999887543
No 110
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=70.47 E-value=4.8 Score=33.97 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=28.7
Q ss_pred EEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
.+.|..+.|+.+|+++|++..|+|+++++|-.
T Consensus 13 ~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~ 44 (74)
T cd01813 13 SVTTLSEDTVLDLKQFIKTLTGVLPERQKLLG 44 (74)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCHHHEEEEe
Confidence 45778889999999999999999999999954
No 111
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=70.06 E-value=6.8 Score=34.78 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=31.1
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..++.|..++|+.+|+.+|.+.|+++++.++||.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~ 49 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSI 49 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeee
Confidence 3567888999999999999999999999999987
No 112
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=70.02 E-value=5.6 Score=35.95 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=30.3
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+.|..++|+.+|+++|++..|++++++|||.
T Consensus 40 ~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~ 72 (103)
T cd01802 40 FELRVSPFETVISVKAKIQRLEGIPVAQQHLIW 72 (103)
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEE
Confidence 467889999999999999999999999999974
No 113
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=69.14 E-value=4.9 Score=34.38 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=27.6
Q ss_pred EEEeeccccHHHHHHHHHHHhCCCCCceEEE
Q 003426 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w 625 (821)
.+.+..+.|+.+|+++|++..|++++++||-
T Consensus 16 ~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~ 46 (80)
T cd01792 16 LVSLRDSMTVSELKQQIAQKIGVPAFQQRLA 46 (80)
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCHHHEEEE
Confidence 4567788999999999999999999999993
No 114
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=66.83 E-value=5.2 Score=34.13 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=26.7
Q ss_pred eeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 598 VQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 598 v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
+..++|+.+|+++|++..|+|++++|||.
T Consensus 19 v~~~~TV~~lK~~i~~~~gi~~~~QrLi~ 47 (78)
T cd01797 19 LSRLTKVEELREKIQELFNVEPECQRLFY 47 (78)
T ss_pred cCCcCcHHHHHHHHHHHhCCCHHHeEEEe
Confidence 56789999999999999999999999985
No 115
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=66.55 E-value=12 Score=31.65 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=46.6
Q ss_pred EEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEEEeC
Q 003426 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKS 776 (821)
Q Consensus 710 ~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~~ 776 (821)
+.|+.+.+|.+|...|....|+|++..-.+|. + ..++...|+....|++|+.|..-..
T Consensus 12 l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~------G---~~L~d~~tL~~~~i~~g~~l~v~~~ 69 (76)
T cd01800 12 FTLQLSDPVSVLKVKIHEETGMPAGKQKLQYE------G---IFIKDSNSLAYYNLANGTIIHLQLK 69 (76)
T ss_pred EEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC------C---EEcCCCCcHHHcCCCCCCEEEEEEe
Confidence 56788999999999999999999987765553 2 2356678999999999999976543
No 116
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=65.56 E-value=43 Score=29.32 Aligned_cols=68 Identities=9% Similarity=0.148 Sum_probs=46.6
Q ss_pred EeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCcccccccc-CccCcccccccCCCCEEEEEeCCC
Q 003426 706 YVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHL-DKRTSFRLSQIEDGDIICFQKSPP 778 (821)
Q Consensus 706 ~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i-~~~~t~~~~el~~GDIi~fQ~~~~ 778 (821)
-+-+...++.++|..+...++++..++.+ ..||--- .++.- |.+ ++..|+..+.|.+|-.|+++...+
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i~~E--~RLW~~~--~~~~~-e~L~~~~~Tv~da~L~~gQ~vliE~rn~ 82 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNIQEE--TRLWNKY--SENSY-ELLNNPEITVEDAGLYDGQVVLIEERNE 82 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT-TS---EEEEEEC--TTTCE-EEE--TTSBTTTTT--TTEEEEEEE--T
T ss_pred cHhHhhccccChHHHHHHHHHHHhCCCcc--ceehhcc--CCcch-hhhCCCCccHHHccCcCCCEEEEEeecc
Confidence 34456678999999999999999999554 5556544 44544 665 567899999999999999987653
No 117
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=65.00 E-value=9.4 Score=32.07 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=29.2
Q ss_pred eEEEeeccccHHHHHHHHHHHhCC--CCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGI--PIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~--~~~~~r~w~ 626 (821)
..+.+..++|+.+|++.|++..|+ +++++||+.
T Consensus 13 ~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~ 47 (77)
T cd01805 13 FPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIY 47 (77)
T ss_pred EEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEE
Confidence 356788899999999999999999 999999974
No 118
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=64.90 E-value=12 Score=31.44 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=45.2
Q ss_pred EEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEE
Q 003426 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIIC 772 (821)
Q Consensus 709 ~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~ 772 (821)
.+-|..+.+|+++...|.+.-|+|++..-.+|. + ..++...|++...+++|+.|-
T Consensus 12 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~------G---k~L~D~~tL~~~~i~~~~tl~ 66 (74)
T cd01793 12 TLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLA------G---VPLEDDATLGQCGVEELCTLE 66 (74)
T ss_pred EEEECCcCcHHHHHHHHHhhhCCCHHHEEEEEC------C---eECCCCCCHHHcCCCCCCEEE
Confidence 356789999999999999999999988766663 2 246777899999999999884
No 119
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=64.10 E-value=27 Score=30.20 Aligned_cols=66 Identities=14% Similarity=0.091 Sum_probs=49.8
Q ss_pred EEEEecCCChHHHHHHHHHHcCCCCCCcEE-EEEeeccCccccccccCccCcccccccCCCCEEEEEeCC
Q 003426 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIE-LYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSP 777 (821)
Q Consensus 709 ~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~-lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~~~ 777 (821)
-.-++...+|++|...|..+.|.|+...-. +|-.= ...+++..+...++....+.||..|-.-...
T Consensus 16 ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~---~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~~ 82 (84)
T cd01789 16 EKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGD---DKLVSKLDDDDALLGSYPVDDGCRIHVIDVS 82 (84)
T ss_pred eEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCC---CCeEeecCCCccEeeeccCCCCCEEEEEeCC
Confidence 345678899999999999999998888755 55543 2334345567889999999999998776543
No 120
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=63.95 E-value=30 Score=30.91 Aligned_cols=65 Identities=9% Similarity=0.055 Sum_probs=54.0
Q ss_pred EeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEEEeCCC
Q 003426 706 YVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSPP 778 (821)
Q Consensus 706 ~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~~~~ 778 (821)
+--++.|+.+++|.+|...|.+..|.|++.+-..|. . . +..|...|+....|..|.+|+-=...+
T Consensus 15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~d--G----~--~L~DDsrTLssyGv~sgSvl~LlideP 79 (107)
T cd01795 15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSID--G----K--ILSDDCATLGTLGVIPESVILLKADEP 79 (107)
T ss_pred CCceEEeCccccHHHHHHHHHHHhcCCcccceeeec--C----c--eeccCCccHHhcCCCCCCEEEEEecCC
Confidence 344567899999999999999999999988766665 2 1 578889999999999999999876443
No 121
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=60.71 E-value=14 Score=30.72 Aligned_cols=53 Identities=17% Similarity=0.287 Sum_probs=42.3
Q ss_pred EEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEE
Q 003426 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDII 771 (821)
Q Consensus 710 ~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi 771 (821)
+-|..+.+|.+|...|.+.-|+|++..-.+|. + .+++...++....|.+|.+|
T Consensus 13 l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~------G---~~L~D~~~l~~~~i~~~~tv 65 (70)
T cd01794 13 LSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFS------G---KLLTDKTRLQETKIQKDYVV 65 (70)
T ss_pred EEECCcChHHHHHHHHHHHhCCCHHHeEEEEC------C---eECCCCCCHHHcCCCCCCEE
Confidence 56788899999999999999999977666553 2 24677788888888887765
No 122
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=60.67 E-value=22 Score=28.65 Aligned_cols=55 Identities=18% Similarity=0.319 Sum_probs=42.2
Q ss_pred EEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEE
Q 003426 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICF 773 (821)
Q Consensus 710 ~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~f 773 (821)
+-++.+.+|.+|...|.+..|+|++....+|. + ..++...++....+.+|+.|.+
T Consensus 12 ~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~------g---~~l~d~~~l~~~~v~~~~~i~v 66 (69)
T cd01769 12 LEVSPDDTVAELKAKIAAKEGVPPEQQRLIYA------G---KILKDDKTLSDYGIQDGSTLHL 66 (69)
T ss_pred EEECCCChHHHHHHHHHHHHCcChHHEEEEEC------C---cCCCCcCCHHHCCCCCCCEEEE
Confidence 45677899999999999999999876544332 2 2356677888899999998765
No 123
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=58.49 E-value=21 Score=29.23 Aligned_cols=55 Identities=16% Similarity=0.358 Sum_probs=42.8
Q ss_pred EEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEE
Q 003426 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICF 773 (821)
Q Consensus 710 ~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~f 773 (821)
+.++.+.+|.+|...|.+..|+|++..-.+|. .. .++...++....+.+|+-|..
T Consensus 14 i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~-----g~----~l~d~~~L~~~~i~~g~~l~v 68 (71)
T cd01812 14 LSISSQATFGDLKKMLAPVTGVEPRDQKLIFK-----GK----ERDDAETLDMSGVKDGSKVML 68 (71)
T ss_pred EEECCCCcHHHHHHHHHHhhCCChHHeEEeeC-----Cc----ccCccCcHHHcCCCCCCEEEE
Confidence 45788999999999999999999976554442 22 344577899999999998753
No 124
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=58.12 E-value=31 Score=29.46 Aligned_cols=67 Identities=9% Similarity=0.103 Sum_probs=44.1
Q ss_pred EEEeeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCCCCCCCCCCCcchhchHHHHHhhhccccccceeEEEE
Q 003426 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLE 670 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 670 (821)
.+++++..++.+|.+.|++.|+.+++...|+......++. -.|+.. +..|+++.+.+ .+..+.|++.
T Consensus 10 ai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~~~~~---~v~l~~---e~~me~aW~~v---~~~~ltLwcq 76 (78)
T cd06411 10 ALRAPRGADVSSLRALLSQALPQQAQRGQLSYRAPGEDGH---WVPISG---EESLQRAWQDV---ADGPRGLQLQ 76 (78)
T ss_pred EEEccCCCCHHHHHHHHHHHhcCChhhcEEEecCCCCCcc---EeecCc---chHHHHHHHhc---cCCceEEEEe
Confidence 4688899999999999999999999999998754333211 123431 12455554432 2345667764
No 125
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=57.22 E-value=17 Score=28.86 Aligned_cols=62 Identities=23% Similarity=0.324 Sum_probs=44.3
Q ss_pred EEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCC
Q 003426 692 LFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (821)
Q Consensus 692 ~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GD 769 (821)
|++|..+ . . ..+-|+.+.+|++|...|.+..|+|++..-.+|. + ..++...|+....+.+|+
T Consensus 3 i~vk~~~-~--~----~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~------g---~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 3 LTVKTLD-G--T----ITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYK------G---KVLEDDRTLADYNIQDGS 64 (64)
T ss_pred EEEEECC-c--e----EEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC------C---EECCCCCCHHHcCCcCCC
Confidence 5666665 2 2 2456888999999999999999999875443432 1 124456788888888886
No 126
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=55.08 E-value=21 Score=29.48 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=31.0
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCC-CceEEEE
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPI-QLQRFWI 626 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~-~~~r~w~ 626 (821)
...++|.+++++..|.+..++..|+++ +.++|+.
T Consensus 12 ~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~f 46 (72)
T PF11976_consen 12 EIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIF 46 (72)
T ss_dssp EEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEE
T ss_pred EEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEE
Confidence 457899999999999999999999999 8999975
No 127
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=54.29 E-value=52 Score=27.90 Aligned_cols=58 Identities=10% Similarity=0.063 Sum_probs=44.3
Q ss_pred EEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEEEe
Q 003426 708 GRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQK 775 (821)
Q Consensus 708 g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~ 775 (821)
..+-|+.+.+|++|...|.+..|+|++..-..|. +. .++.. ++....|.+|+-|..=.
T Consensus 14 ~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~------Gk---~L~d~-~L~~~gi~~~~~i~l~~ 71 (78)
T cd01804 14 FDLSVPPDETVEGLKKRISQRLKVPKERLALLHR------ET---RLSSG-KLQDLGLGDGSKLTLVP 71 (78)
T ss_pred EEEEECCcCHHHHHHHHHHHHhCCChHHEEEEEC------Cc---CCCCC-cHHHcCCCCCCEEEEEe
Confidence 3467888999999999999999999875544443 32 34555 89999999999887643
No 128
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=53.44 E-value=42 Score=29.92 Aligned_cols=58 Identities=14% Similarity=0.206 Sum_probs=46.2
Q ss_pred EEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEEEe
Q 003426 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQK 775 (821)
Q Consensus 709 ~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~ 775 (821)
++-|..+.+++-|+..-+++.|++-++==-||.= ..|+...|-.+.+..+||.||+=.
T Consensus 34 ~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG---------~rI~~~~TP~~L~mEd~D~Iev~~ 91 (99)
T KOG1769|consen 34 VFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDG---------QRIRETHTPADLEMEDGDEIEVVQ 91 (99)
T ss_pred EEEeecCChHHHHHHHHHHHcCCccceEEEEECC---------cCcCCCCChhhhCCcCCcEEEEEe
Confidence 4567889999999999999999998653334431 367788899999999999999743
No 129
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=52.54 E-value=29 Score=29.51 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=41.5
Q ss_pred EEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEE
Q 003426 711 FLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICF 773 (821)
Q Consensus 711 ~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~f 773 (821)
-+..+.+|++|...|.+..|+|++..- |.- + -.+ ..++.+.++....+.+|+.|..
T Consensus 18 ~v~~~~TV~~lK~~I~~~~~i~~~~qr-L~~-~--~~G---~~L~D~~tL~~~gi~~gs~l~l 73 (80)
T cd01792 18 SLRDSMTVSELKQQIAQKIGVPAFQQR-LAH-L--DSR---EVLQDGVPLVSQGLGPGSTVLL 73 (80)
T ss_pred EcCCCCcHHHHHHHHHHHhCCCHHHEE-EEe-c--cCC---CCCCCCCCHHHcCCCCCCEEEE
Confidence 567889999999999999999885543 321 1 122 2466777999999999998854
No 130
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=51.60 E-value=32 Score=30.11 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=29.2
Q ss_pred CcceEEEeeccccHHHHHHHHHHHhCCCCCceEEEEEe
Q 003426 591 DKVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWA 628 (821)
Q Consensus 591 ~~~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~~~ 628 (821)
+.+.+-.+.|..|+..+.+.+.+.|.+ .+..|||...
T Consensus 13 ~~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~ 49 (88)
T PF14836_consen 13 QSVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKY 49 (88)
T ss_dssp CEEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEEC
T ss_pred ccHhHhhccccChHHHHHHHHHHHhCC-Cccceehhcc
Confidence 345677888999999999999999999 7779999865
No 131
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=51.34 E-value=29 Score=29.19 Aligned_cols=53 Identities=11% Similarity=0.065 Sum_probs=42.7
Q ss_pred EEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEE
Q 003426 711 FLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIIC 772 (821)
Q Consensus 711 ~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~ 772 (821)
-++.+.+|++|...|.+.-|+|++..=..|- +. .++...|+....|.+|+.|-
T Consensus 17 ~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~------Gk---~L~D~~tL~~ygi~~~stv~ 69 (73)
T cd01791 17 KCNPDDTIGDLKKLIAAQTGTRPEKIVLKKW------YT---IFKDHISLGDYEIHDGMNLE 69 (73)
T ss_pred EeCCCCcHHHHHHHHHHHhCCChHHEEEEeC------Cc---CCCCCCCHHHcCCCCCCEEE
Confidence 5678899999999999999999987755442 32 46677899999999998764
No 132
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=48.69 E-value=49 Score=38.25 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=54.0
Q ss_pred EEEEecCCChHHHHHHHHHHcCCCC--CCcEEEEEeeccCccccccccCccCcccccccCCCCEEEEEeCCCCCCccCCC
Q 003426 709 RLFLKSSSKPIEILRKLNQMAGFDP--DEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSPPLESEQECR 786 (821)
Q Consensus 709 ~~~~~~~~~v~~l~~~i~~~~g~p~--~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~~~~~~~~~~~~ 786 (821)
-+.++.+..+.||+|.|.+..|=.. .+.=.-|.=. .++- .++++..|+.+..+.|||+|..+..... .....
T Consensus 15 DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~--r~gG--~pL~~~~sL~~~gV~DG~~L~L~p~~~~--~p~~v 88 (452)
T TIGR02958 15 DVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALA--RAGG--SPLDPDASLAEAGVRDGELLVLVPASAT--EPAPV 88 (452)
T ss_pred eeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEe--cCCC--CCCCCCCCHHHcCCCCCCeEEEeeCCCC--CCCCc
Confidence 3456888999999999999987421 1111223333 2332 5899999999999999999999975433 23336
Q ss_pred CCCHHH
Q 003426 787 YPDVPS 792 (821)
Q Consensus 787 ~~~v~~ 792 (821)
|.|+.+
T Consensus 89 ~dDv~d 94 (452)
T TIGR02958 89 VEDVSD 94 (452)
T ss_pred cccHHH
Confidence 777765
No 133
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=48.28 E-value=25 Score=26.61 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=28.7
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+++...+|+.+|++.|++.+|++++.++|..
T Consensus 10 ~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~ 42 (69)
T cd00196 10 VELLVPSGTTVADLKEKLAKKLGLPPEQQRLLV 42 (69)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEE
Confidence 456777789999999999999999999999865
No 134
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=44.04 E-value=29 Score=29.80 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=22.4
Q ss_pred cceEEEeeccccHHHHHHHHHHHhCCCCCceEE
Q 003426 592 KVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRF 624 (821)
Q Consensus 592 ~~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~ 624 (821)
....+.+..+.|+.+|+++|++.++++.+.+.|
T Consensus 14 G~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L 46 (80)
T PF11543_consen 14 GMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSL 46 (80)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHS---TTT---
T ss_pred CCEEEEcCCcccHHHHHHHHHHHcCCCCcceEE
Confidence 345677888999999999999999999887665
No 135
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=43.76 E-value=49 Score=27.29 Aligned_cols=55 Identities=7% Similarity=0.155 Sum_probs=41.8
Q ss_pred EEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEE
Q 003426 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIIC 772 (821)
Q Consensus 709 ~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~ 772 (821)
.+-+..+.+|.+|...|.+..|.|.+..-.+| .+. .++...|+....+++|+.|-
T Consensus 13 ~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~------~Gk---~L~d~~tL~~~~i~~~stl~ 67 (71)
T cd01808 13 EIEIAEDASVKDFKEAVSKKFKANQEQLVLIF------AGK---ILKDTDTLTQHNIKDGLTVH 67 (71)
T ss_pred EEEECCCChHHHHHHHHHHHhCCCHHHEEEEE------CCe---EcCCCCcHHHcCCCCCCEEE
Confidence 46788899999999999999998775433222 232 35667799999999998874
No 136
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=43.69 E-value=65 Score=27.63 Aligned_cols=49 Identities=16% Similarity=0.303 Sum_probs=37.0
Q ss_pred EEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCC-CCCcEEEEEee
Q 003426 694 FKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFD-PDEEIELYEEI 743 (821)
Q Consensus 694 lK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p-~~t~l~lyEEi 743 (821)
+|.|..+- .-.-.-++.|+.+.+..+++..+.++.|+. ......|||.+
T Consensus 2 ikV~~~~~-~~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~ 51 (87)
T cd01768 2 LRVYPEDP-SGGTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVL 51 (87)
T ss_pred EEEeCCcC-CCccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEE
Confidence 45554442 112234677899999999999999999999 66678899988
No 137
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=41.85 E-value=65 Score=27.05 Aligned_cols=58 Identities=9% Similarity=0.157 Sum_probs=46.2
Q ss_pred EEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEE
Q 003426 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICF 773 (821)
Q Consensus 710 ~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~f 773 (821)
+-|..+.+|++|...|.++.|+|++..-.+|.-+ + + ..++...++....|.+|+-|..
T Consensus 14 v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~--~-G---k~l~D~~~L~~~~i~~g~~i~l 71 (74)
T cd01813 14 VTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKV--K-G---KPAEDDVKISALKLKPNTKIMM 71 (74)
T ss_pred EEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecc--c-C---CcCCCCcCHHHcCCCCCCEEEE
Confidence 4578899999999999999999999888888323 2 3 2356678898889999987753
No 138
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=41.44 E-value=72 Score=27.42 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=37.8
Q ss_pred EEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCC-CCCCcEEEEEee
Q 003426 693 FFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGF-DPDEEIELYEEI 743 (821)
Q Consensus 693 flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~-p~~t~l~lyEEi 743 (821)
++|.|......=.-.-++.|+...++++++..+.++.|+ .......|||..
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~ 55 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVE 55 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEE
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEE
Confidence 577776665533345678899999999999999999999 333447787444
No 139
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=41.40 E-value=2e+02 Score=25.09 Aligned_cols=65 Identities=17% Similarity=0.346 Sum_probs=43.8
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCCCCCCCCCCCcchhchHHHHHhhhccccccceeEEEEee
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVE 672 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 672 (821)
...+.|+.+.|+.+|...|.+.+++++++ .+..+. |++.-|. ++.+|+++++... . +=.||+-..
T Consensus 17 k~kflv~~~~tv~~~~~~lrk~L~l~~~~-slflyv---nn~f~p~-------~d~~~g~LY~~~~--~--dGfLyi~Ys 81 (87)
T cd01612 17 QKVFKISATQSFQAVIDFLRKRLKLKASD-SLFLYI---NNSFAPS-------PDENVGNLYRCFG--T--NGELIVSYC 81 (87)
T ss_pred ccEEEeCCCCCHHHHHHHHHHHhCCCccC-eEEEEE---CCccCCC-------chhHHHHHHHhcC--C--CCEEEEEEe
Confidence 34678999999999999999999987765 333333 3333332 3468999987652 1 234666554
No 140
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=40.67 E-value=51 Score=28.83 Aligned_cols=34 Identities=9% Similarity=0.159 Sum_probs=29.5
Q ss_pred EEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEe
Q 003426 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEE 742 (821)
Q Consensus 709 ~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEE 742 (821)
.+.|+.+.++++++..|+++++++++..|-||=.
T Consensus 19 kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvn 52 (87)
T cd01612 19 VFKISATQSFQAVIDFLRKRLKLKASDSLFLYIN 52 (87)
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEEC
Confidence 3568999999999999999999999888888743
No 141
>COG5131 URM1 Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=39.46 E-value=50 Score=28.72 Aligned_cols=56 Identities=21% Similarity=0.393 Sum_probs=35.5
Q ss_pred CChHHHHHHHHHHcCCCCCCcEEEEE---eeccCccccccccCccC-cc---cccccCCCCEEEEEeC
Q 003426 716 SKPIEILRKLNQMAGFDPDEEIELYE---EIKFEPCVMCEHLDKRT-SF---RLSQIEDGDIICFQKS 776 (821)
Q Consensus 716 ~~v~~l~~~i~~~~g~p~~t~l~lyE---Eik~~p~~i~e~i~~~~-t~---~~~el~~GDIi~fQ~~ 776 (821)
.+|..++..+.....-| +.-.+|- |+ .|+.|| .|.... -+ .+.-|.+||||+|-..
T Consensus 30 ~~vg~liD~~~~~i~~p--~~~sifie~g~l--rpGiI~-LINd~DWeLleke~y~ledgDiIvfist 92 (96)
T COG5131 30 SSVGTLIDALRYFIYAP--TRDSIFIEHGEL--RPGIIC-LINDMDWELLEKERYPLEDGDIIVFIST 92 (96)
T ss_pred cchhhHHHHHHHHHhCC--ccceeeecCCCC--cccEEE-EEcCccHhhhhcccccCCCCCEEEEEec
Confidence 56788888888853333 3444553 56 688873 333322 22 2477999999999643
No 142
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=39.37 E-value=1.2e+02 Score=25.76 Aligned_cols=78 Identities=13% Similarity=0.118 Sum_probs=53.6
Q ss_pred CcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCC
Q 003426 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (821)
Q Consensus 688 ~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~ 767 (821)
+.+.|=+++-|-. ++ ......+++|++|...|...++-+......|+--. |.......+ +.||.+++|..
T Consensus 5 ~~~~I~vRlpdG~--~l----~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~---Pr~~l~~~~-~~tl~e~~l~p 74 (82)
T PF00789_consen 5 DVVRIQVRLPDGS--RL----QRRFPKSDTLQDLYDFVESQLFSPEESDFELITAF---PRRELTDED-SKTLEEAGLLP 74 (82)
T ss_dssp SEEEEEEEETTST--EE----EEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESS---STEECCSTT-TSBTCCCTTSS
T ss_pred CEEEEEEECCCCC--EE----EEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCC---CCcCCCccc-cccHHHhcCCC
Confidence 3456666664432 32 22345889999999999998888776557776655 643323333 58999999999
Q ss_pred CCEEEEEe
Q 003426 768 GDIICFQK 775 (821)
Q Consensus 768 GDIi~fQ~ 775 (821)
+..|+.++
T Consensus 75 ~~~l~v~~ 82 (82)
T PF00789_consen 75 SATLIVEK 82 (82)
T ss_dssp CEEEEEE-
T ss_pred CeEEEEEC
Confidence 99998874
No 143
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=37.10 E-value=37 Score=29.09 Aligned_cols=30 Identities=13% Similarity=0.035 Sum_probs=24.5
Q ss_pred EEeeccccHHHHHHHHHHHhC--CCCCceEEE
Q 003426 596 FRVQKQTSFMAFKEEIAKEFG--IPIQLQRFW 625 (821)
Q Consensus 596 ~~v~k~~~~~~~~~~v~~~~~--~~~~~~r~w 625 (821)
+.+..++|+.+|+++|++..+ .+++++||-
T Consensus 18 ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLI 49 (79)
T cd01790 18 VSCFLNWTVGELKTHLSRVYPSKPLEQDQRLI 49 (79)
T ss_pred EecCCcChHHHHHHHHHHhcCCCCChhHeEEE
Confidence 344678999999999999985 557999984
No 144
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=36.96 E-value=28 Score=31.87 Aligned_cols=41 Identities=17% Similarity=0.256 Sum_probs=33.4
Q ss_pred ccccCCCcceEEEeeccccHHHHHHHHHHHhC-------CCCCceEEE
Q 003426 585 FDLVDHDKVRSFRVQKQTSFMAFKEEIAKEFG-------IPIQLQRFW 625 (821)
Q Consensus 585 ~~l~~~~~~~~~~v~k~~~~~~~~~~v~~~~~-------~~~~~~r~w 625 (821)
|-|.|-.++-.+++..++|+.+++++|++..+ .+++++||-
T Consensus 9 frl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLI 56 (113)
T cd01814 9 FRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLI 56 (113)
T ss_pred EEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEE
Confidence 66667667778899999999999999997764 558888884
No 145
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=34.03 E-value=73 Score=28.87 Aligned_cols=32 Identities=6% Similarity=0.252 Sum_probs=26.5
Q ss_pred EEEEecCCChHHHHHHHHHHcCCCCCCcEEEE
Q 003426 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELY 740 (821)
Q Consensus 709 ~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~ly 740 (821)
.+.|+.+.+|++++-.|++++++++++.|-||
T Consensus 36 KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~ 67 (104)
T PF02991_consen 36 KFLVPKDLTVGQFVYIIRKRLQLSPEQALFLF 67 (104)
T ss_dssp EEEEETTSBHHHHHHHHHHHTT--TTS-EEEE
T ss_pred EEEEcCCCchhhHHHHhhhhhcCCCCceEEEE
Confidence 45689999999999999999999999988888
No 146
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.56 E-value=96 Score=34.92 Aligned_cols=71 Identities=17% Similarity=0.292 Sum_probs=52.3
Q ss_pred EEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcC---CCCCCcEEEEEeeccCccccccccCccCcccccccCC
Q 003426 691 LLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAG---FDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (821)
Q Consensus 691 l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g---~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~ 767 (821)
-|++|..+-. ++ .+-|..+.+|.+|...|.+.-| +|.+..-.+|. +. .++...|+....|.+
T Consensus 2 kItVKtl~g~--~~----~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~------Gk---iL~Dd~tL~dy~I~e 66 (378)
T TIGR00601 2 TLTFKTLQQQ--KF----KIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYS------GK---ILSDDKTVREYKIKE 66 (378)
T ss_pred EEEEEeCCCC--EE----EEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEEC------CE---ECCCCCcHHHcCCCC
Confidence 3666765533 22 2467889999999999999988 88876555553 33 366777999999999
Q ss_pred CCEEEEEeC
Q 003426 768 GDIICFQKS 776 (821)
Q Consensus 768 GDIi~fQ~~ 776 (821)
||.|++-..
T Consensus 67 ~~~Ivvmv~ 75 (378)
T TIGR00601 67 KDFVVVMVS 75 (378)
T ss_pred CCEEEEEec
Confidence 998887644
No 147
>PF14353 CpXC: CpXC protein
Probab=33.39 E-value=53 Score=30.70 Aligned_cols=45 Identities=7% Similarity=0.096 Sum_probs=25.4
Q ss_pred EEEeccCceeeeeeeeeeEEEeeCCCCCHHHHHHHhhhhecccCCCccccccCCe
Q 003426 316 IECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEEHGL 370 (821)
Q Consensus 316 i~C~~c~~~s~~~e~f~~l~l~v~~~~~l~esL~~~~~~E~l~g~n~y~c~~c~~ 370 (821)
++|++|++..... -+ -.++......+.+.|. ..+. +.+.|+.||.
T Consensus 2 itCP~C~~~~~~~-v~--~~I~~~~~p~l~e~il---~g~l----~~~~CP~Cg~ 46 (128)
T PF14353_consen 2 ITCPHCGHEFEFE-VW--TSINADEDPELKEKIL---DGSL----FSFTCPSCGH 46 (128)
T ss_pred cCCCCCCCeeEEE-EE--eEEcCcCCHHHHHHHH---cCCc----CEEECCCCCC
Confidence 6899999864421 11 3344444444555442 2222 3478999985
No 148
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=33.07 E-value=70 Score=29.39 Aligned_cols=33 Identities=9% Similarity=0.217 Sum_probs=29.3
Q ss_pred EEEEecCCChHHHHHHHHHHcCCCCCCcEEEEE
Q 003426 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYE 741 (821)
Q Consensus 709 ~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyE 741 (821)
.+.|+.+.+|++++-.|++++++++++.|-||=
T Consensus 44 KflVp~~~tv~~f~~~irk~l~l~~~~slfl~V 76 (112)
T cd01611 44 KYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFV 76 (112)
T ss_pred eEEecCCCCHHHHHHHHHHHhCCCccceEEEEE
Confidence 456899999999999999999999988887773
No 149
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=32.93 E-value=1.6e+02 Score=26.40 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=26.1
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEE
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRF 624 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~ 624 (821)
.+-+.|.+.+++.+|..++++.++++.. +.+
T Consensus 24 tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~l 54 (97)
T cd06410 24 TRIVSVDRSISFKELVSKLSELFGAGVV-VTL 54 (97)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEE
Confidence 4567899999999999999999999866 444
No 150
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=30.86 E-value=1e+02 Score=26.90 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=30.6
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
...|+|+|+++|..|.+..++..|...+.+|+..
T Consensus 36 elfFkiKktT~f~klm~af~~rqGK~m~slRfL~ 69 (103)
T COG5227 36 ELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLF 69 (103)
T ss_pred EEEEEEeccchHHHHHHHHHHHhCcCcceeEEEE
Confidence 3478999999999999999999999999999864
No 151
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=30.86 E-value=43 Score=29.46 Aligned_cols=32 Identities=13% Similarity=0.325 Sum_probs=27.5
Q ss_pred eccccHHHHHHHHHHHhCCCCCceEEEEEeec
Q 003426 599 QKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKR 630 (821)
Q Consensus 599 ~k~~~~~~~~~~v~~~~~~~~~~~r~w~~~~~ 630 (821)
..+.|+-||+..++-.+.-|++.+|||+|..-
T Consensus 19 ~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~e 50 (110)
T KOG4495|consen 19 KESSTVFELKRKLEGILKRPVNEQRLYKMDTE 50 (110)
T ss_pred CccccHHHHHHHHHHHHhCCCcchheeecCHH
Confidence 34678999999999999999999999998653
No 152
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=29.17 E-value=2.2e+02 Score=24.54 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=28.3
Q ss_pred cceEEEeeccccHHHHHHHHHHHhCCCC-CceEEEEE
Q 003426 592 KVRSFRVQKQTSFMAFKEEIAKEFGIPI-QLQRFWIW 627 (821)
Q Consensus 592 ~~~~~~v~k~~~~~~~~~~v~~~~~~~~-~~~r~w~~ 627 (821)
....++++.+.++.+|++.|++.+++.. ..+.|=..
T Consensus 10 d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~ 46 (82)
T cd06407 10 EKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYL 46 (82)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEE
Confidence 3457899999999999999999999865 45665333
No 153
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=28.97 E-value=44 Score=27.22 Aligned_cols=34 Identities=15% Similarity=0.281 Sum_probs=23.9
Q ss_pred CccccccCCeeeee-eeEEE--ecCCCeeEEEEEEEE
Q 003426 361 NKYHAEEHGLQDAK-KGVLF--IDFPPVLQLQLKRFE 394 (821)
Q Consensus 361 n~y~c~~c~~~~a~-k~~~~--~~lP~vL~i~L~Rf~ 394 (821)
+.+.|++||-.... +.+.. ..+..++-||.++|.
T Consensus 3 ~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~ 39 (68)
T COG3478 3 NAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFI 39 (68)
T ss_pred ccccCCCcCCcchhhceeeccCCCcceeEEecccEEE
Confidence 45679999865543 33332 258899999999996
No 154
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=28.16 E-value=1.4e+02 Score=25.48 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=29.3
Q ss_pred cceEEEeeccccHHHHHHHHHHHhCC--CCCceEEE
Q 003426 592 KVRSFRVQKQTSFMAFKEEIAKEFGI--PIQLQRFW 625 (821)
Q Consensus 592 ~~~~~~v~k~~~~~~~~~~v~~~~~~--~~~~~r~w 625 (821)
..++++|.+.+|..++.+.+.+.+++ ++....||
T Consensus 17 ~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 17 TYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp SEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred cEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 36789999999999999999999998 45567777
No 155
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=28.05 E-value=70 Score=26.95 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=23.2
Q ss_pred eccccHHHHHHHHHHHhC-CCCCceEEEE
Q 003426 599 QKQTSFMAFKEEIAKEFG-IPIQLQRFWI 626 (821)
Q Consensus 599 ~k~~~~~~~~~~v~~~~~-~~~~~~r~w~ 626 (821)
..+.|+.+|++.|++..+ ++++++|++.
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~ 48 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRL 48 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEe
Confidence 346799999999999976 5789999974
No 156
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=27.84 E-value=1.1e+02 Score=25.68 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=30.2
Q ss_pred cceEEEeeccccHHHHHHHHHHHhCCCCCceEEEEE
Q 003426 592 KVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIW 627 (821)
Q Consensus 592 ~~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~~ 627 (821)
....++++...++.+|+++|++.++.+...++|...
T Consensus 11 ~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~ 46 (81)
T smart00666 11 ETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ 46 (81)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 356788899999999999999999988777777443
No 157
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=26.47 E-value=2.1e+02 Score=24.67 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=31.1
Q ss_pred EEEEEecCCChHHHHHHHHHHcCCCCC-CcEEEEEee
Q 003426 708 GRLFLKSSSKPIEILRKLNQMAGFDPD-EEIELYEEI 743 (821)
Q Consensus 708 g~~~~~~~~~v~~l~~~i~~~~g~p~~-t~l~lyEEi 743 (821)
-++.|....++++++..+.++.|++.+ ..-.|||.+
T Consensus 18 kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~ 54 (90)
T smart00314 18 KTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVL 54 (90)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEe
Confidence 456788999999999999999999875 568889988
No 158
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=25.45 E-value=3.3e+02 Score=22.57 Aligned_cols=52 Identities=12% Similarity=0.110 Sum_probs=37.9
Q ss_pred EEEEecCCChHHHHHHHHHHcCCCCCCcEEEEE-eeccCccccccccCccCccccc
Q 003426 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYE-EIKFEPCVMCEHLDKRTSFRLS 763 (821)
Q Consensus 709 ~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyE-Eik~~p~~i~e~i~~~~t~~~~ 763 (821)
.+.|+.+.++.+|+..|++.+|+.+..-.-|+- .. +.+.- ..+++..++.+.
T Consensus 10 ~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~--~~~~~-~wL~~~k~l~~q 62 (80)
T PF09379_consen 10 TFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVD--KDGEH-HWLDLDKKLKKQ 62 (80)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EB--TTSSE-EEE-SSSBGGGS
T ss_pred EEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeec--CCCcc-eeccCcccHHHH
Confidence 456889999999999999999999777777666 34 22322 457777777654
No 159
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=25.20 E-value=3e+02 Score=23.98 Aligned_cols=48 Identities=15% Similarity=0.183 Sum_probs=39.1
Q ss_pred EEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEee
Q 003426 692 LFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEI 743 (821)
Q Consensus 692 ~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi 743 (821)
+++|+|-++..+. ++.|....++.++...+.++-+...+..-.|||-+
T Consensus 3 ~vvkv~~~Dg~sK----~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~ 50 (85)
T cd01787 3 QVVKVYSEDGASK----SLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHL 50 (85)
T ss_pred eEEEEEecCCCee----EEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEec
Confidence 4567775553332 45788999999999999999999999999999998
No 160
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=24.98 E-value=2.2e+02 Score=24.33 Aligned_cols=62 Identities=23% Similarity=0.265 Sum_probs=39.9
Q ss_pred EEEeeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCCCCCCCCCCCcchhchHHHHHhhhccccccceeEEEEe
Q 003426 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEV 671 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 671 (821)
.-|...+.++++|+.-|... |.+++.++|- |.=|.+.+...+.+.|+.++.= .+.-.||||.
T Consensus 18 ~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~--------t~fPRk~~~~~d~~~TL~e~gL------~p~~~L~Vee 79 (80)
T cd01771 18 ERRFLGDTPLQVLLNFVASK-GYPIDEYKLL--------SSWPRRDLTQLDPNFTLLELKL------YPQETLILEE 79 (80)
T ss_pred EEEeCCCCcHHHHHHHHHhc-CCCCCCEEEe--------cCCCCCCCcCCCCCCcHHHcCC------CCCcEEEEEc
Confidence 44778899999999999654 7776666652 2234555654455678877621 1234588873
No 161
>PLN02560 enoyl-CoA reductase
Probab=24.54 E-value=80 Score=34.50 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=0.0
Q ss_pred EEEeeccccHHHHHHHHHHHhCC-CCCceEEEE
Q 003426 595 SFRVQKQTSFMAFKEEIAKEFGI-PIQLQRFWI 626 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~~~~-~~~~~r~w~ 626 (821)
++.+..++|+++|+++|++..++ +++++|++.
T Consensus 17 ~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~ 49 (308)
T PLN02560 17 GLEVPDSATVADLKKAIHKRKKKYYPSRQRLTL 49 (308)
T ss_pred eEEcCCCCcHHHHHHHHHHHcCCCChhheEEEE
No 162
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.45 E-value=1.3e+02 Score=26.47 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=36.3
Q ss_pred CCChHHHHHHHHH-HcCCCCCCcEEEE---EeeccCccccccccCccC----cccccccCCCCEEEEEeC
Q 003426 715 SSKPIEILRKLNQ-MAGFDPDEEIELY---EEIKFEPCVMCEHLDKRT----SFRLSQIEDGDIICFQKS 776 (821)
Q Consensus 715 ~~~v~~l~~~i~~-~~g~p~~t~l~ly---EEik~~p~~i~e~i~~~~----t~~~~el~~GDIi~fQ~~ 776 (821)
..+|.+++..|.. .+.-|++ || -++ .|+.| -.|..-. --....|++||+|+|-..
T Consensus 35 ~~tvgdll~yi~~~~ie~r~~----lFi~~gsv--rpGii-~lINd~DWEllekedy~ledgD~ivfiST 97 (101)
T KOG4146|consen 35 PATVGDLLDYIFGKYIETRDS----LFIHHGSV--RPGII-VLINDMDWELLEKEDYPLEDGDHIVFIST 97 (101)
T ss_pred cccHHHHHHHHHHHHhcCCcc----eEeeCCcC--cCcEE-EEEeccchhhhcccccCcccCCEEEEEEe
Confidence 3678888888876 5555554 55 356 68877 3333322 224588999999999643
No 163
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=24.23 E-value=1.5e+02 Score=30.47 Aligned_cols=65 Identities=14% Similarity=0.249 Sum_probs=32.7
Q ss_pred eEEEEEecCCChHHHHHHHHHHcCCCCC--CcEEEEEeeccCccccccccCccCcccccccCCCCEEEEEeC
Q 003426 707 VGRLFLKSSSKPIEILRKLNQMAGFDPD--EEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKS 776 (821)
Q Consensus 707 ~g~~~~~~~~~v~~l~~~i~~~~g~p~~--t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~~ 776 (821)
.-.++|+++.+|+||+..+.+.++++++ .+|.+||=. -+.|...++...++.. |.++..+..+..
T Consensus 35 ~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~---~~ki~~~~~~d~~i~~--l~~~~~~r~E~i 101 (213)
T PF14533_consen 35 EYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVS---NHKIYKILSEDEPISS--LNDYITLRIEEI 101 (213)
T ss_dssp EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEE---TTEEEEEE-TTSBGGG--S--TTEEEEEE-
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeE---CCEEEeecCCCCchhh--ccCcceeeeecC
Confidence 3467899999999999999999999875 578888554 2333233343333332 244444555543
No 164
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=23.94 E-value=66 Score=27.32 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=0.0
Q ss_pred eccccHHHHHHHHHHHhC--CC-CCceEE
Q 003426 599 QKQTSFMAFKEEIAKEFG--IP-IQLQRF 624 (821)
Q Consensus 599 ~k~~~~~~~~~~v~~~~~--~~-~~~~r~ 624 (821)
+-++|+.+|+++|++.++ ++ ++++||
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrL 46 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPDPELIDL 46 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCChHHeEE
No 165
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=23.36 E-value=3.3e+02 Score=23.82 Aligned_cols=33 Identities=21% Similarity=0.435 Sum_probs=27.2
Q ss_pred cceEEEeeccccHHHHHHHHHHHhCCCCCceEEE
Q 003426 592 KVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (821)
Q Consensus 592 ~~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w 625 (821)
....++|+...++.+|.++|.+.+|+. ..+.+-
T Consensus 12 Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iK 44 (86)
T cd06408 12 DTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIK 44 (86)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEE
Confidence 456789999999999999999999985 455553
No 166
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=22.94 E-value=4.9e+02 Score=25.77 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=50.2
Q ss_pred EEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccC-CCCEE
Q 003426 693 FFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE-DGDII 771 (821)
Q Consensus 693 flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~-~GDIi 771 (821)
+++.|=++.+.. .+.+....++.+++..+++.+|++.-.-.-||+..+ .+...-.+++..++.+.... ..-.|
T Consensus 5 ~~~V~l~dg~~~----~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~--~~~~~~~l~~~~~l~~~~~~~~~~~l 78 (207)
T smart00295 5 VLKVYLLDGTTL----EFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDP--DEDLSHWLDPAKTLLDQDVKSEPLTL 78 (207)
T ss_pred EEEEEecCCCEE----EEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcC--CCCcCeeCCCccCHHHhcCCCCCcEE
Confidence 444444444433 466888999999999999999998766677888773 22221245556666544433 23467
Q ss_pred EEEeC
Q 003426 772 CFQKS 776 (821)
Q Consensus 772 ~fQ~~ 776 (821)
+|-+.
T Consensus 79 ~fr~r 83 (207)
T smart00295 79 YFRVK 83 (207)
T ss_pred EEEEE
Confidence 77754
No 167
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=22.90 E-value=97 Score=28.87 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=25.9
Q ss_pred EEecCCChHHHHHHHHHHcCCCCCCcEEEE
Q 003426 711 FLKSSSKPIEILRKLNQMAGFDPDEEIELY 740 (821)
Q Consensus 711 ~~~~~~~v~~l~~~i~~~~g~p~~t~l~ly 740 (821)
.|+.+.+|++++-.|++++++++.+ +-||
T Consensus 46 lVP~d~tV~qF~~iIRkrl~l~~~k-~flf 74 (121)
T PTZ00380 46 ALPRDATVAELEAAVRQALGTSAKK-VTLA 74 (121)
T ss_pred EcCCCCcHHHHHHHHHHHcCCChhH-EEEE
Confidence 4899999999999999999999988 6544
No 168
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=22.59 E-value=3.2e+02 Score=25.53 Aligned_cols=66 Identities=11% Similarity=0.217 Sum_probs=44.2
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCCCCCCCCCCCcchhchHHHHHhhhccccccceeEEEEee
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVE 672 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 672 (821)
.+.+-|++.+|+.+|...|.+.++++++.+ .+++ |+++-| ...+|++|++.... .|==||+-..
T Consensus 42 ~KfllVP~d~tV~qF~~iIRkrl~l~~~k~--flfV---nn~lp~--------~s~~mg~lYe~~KD---eDGFLYi~Ys 105 (121)
T PTZ00380 42 VHFLALPRDATVAELEAAVRQALGTSAKKV--TLAI---EGSTPA--------VTATVGDIADACKR---DDGFLYVSVR 105 (121)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCChhHE--EEEE---CCccCC--------ccchHHHHHHHhcC---CCCeEEEEEc
Confidence 333369999999999999999999999984 4444 333222 23589999874432 2334777665
Q ss_pred cC
Q 003426 673 FG 674 (821)
Q Consensus 673 ~~ 674 (821)
..
T Consensus 106 ~e 107 (121)
T PTZ00380 106 TE 107 (121)
T ss_pred cc
Confidence 43
No 169
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=22.08 E-value=2.4e+02 Score=23.60 Aligned_cols=55 Identities=7% Similarity=0.004 Sum_probs=39.1
Q ss_pred ecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEE
Q 003426 713 KSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICF 773 (821)
Q Consensus 713 ~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~f 773 (821)
+.+.+|.+|...|.+..+..+-..+.+.-+- .+. .++.+.|+....+.+|+-|.|
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~---~g~---~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEP---KGK---SLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCC---CCc---ccCCcccHhhcCCCCCCEEEE
Confidence 5667999999999988764332345555222 233 466777899999999998877
No 170
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=21.82 E-value=35 Score=40.37 Aligned_cols=160 Identities=16% Similarity=0.239 Sum_probs=88.6
Q ss_pred EeeccccHHHHHHHHHHH--------hCCCCCceEEEEEeecCCCCCCCCCCCCCcchhchHHHHHhhhccccccceeEE
Q 003426 597 RVQKQTSFMAFKEEIAKE--------FGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLF 668 (821)
Q Consensus 597 ~v~k~~~~~~~~~~v~~~--------~~~~~~~~r~w~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (821)
-+.+.+|+.+.+..+-.. +-++..++|+|.= +-..|.+.+.+ .+.+.+++..... .+-++
T Consensus 974 V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K-----~g~~Pg~~~lD--~~~~~eD~~~~~~-----~~~~~ 1041 (1203)
T KOG4598|consen 974 VVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGK-----SGVGPGRAVLD--PNDTLEDRSYNWC-----SHLYL 1041 (1203)
T ss_pred hhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHcc-----CCcCCceEecC--cchhhhhhhhhhH-----HHHHH
Confidence 345567777665443222 3356778888862 22345555533 3345555542111 13355
Q ss_pred EEeecCCCCCCCCCCCCCCCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCcc
Q 003426 669 LEVEFGPDLHPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPC 748 (821)
Q Consensus 669 ~e~~~~~~~~~~~~~~~~~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~ 748 (821)
.|+..+- .+....+..-||+.-|-|.+-++.-.--+++.. ..+.|+-..|.++-|+|-|. |.+-.-=.+=|-
T Consensus 1042 qE~~deV------~~~k~~~sL~i~vRRW~Ps~~e~~pFQEV~Ld~-~~~~E~Re~LS~ISgIPiD~-l~~~Kl~~~FPC 1113 (1203)
T KOG4598|consen 1042 QEITDEV------MIGKPGESLPIMVRRWRPSTVEVNPFQEVLLDA-NAEVEFREALSKISGIPVDR-LAITKLKEFFPC 1113 (1203)
T ss_pred HHHHhhc------ccCCCCccchhhheeccccceecCCceeEEecC-cchHHHHHHHHHhcCCchhh-hhhhhcccCCCc
Confidence 5554322 223345668899999999988876665555544 45788999999999999763 332210000132
Q ss_pred c-cccccCc---------cCcccc---cccCCCCEEEEEeCC
Q 003426 749 V-MCEHLDK---------RTSFRL---SQIEDGDIICFQKSP 777 (821)
Q Consensus 749 ~-i~e~i~~---------~~t~~~---~el~~GDIi~fQ~~~ 777 (821)
. | -.++. -.|+.. .-+++|-||-|-...
T Consensus 1114 ~~I-S~Ld~~e~~~W~~~~~TL~~~PL~~~d~GgV~~YkD~T 1154 (1203)
T KOG4598|consen 1114 KWI-SRLDMLENKVWTKDLQTLYPLPLEFLDKGGVLYYKDST 1154 (1203)
T ss_pred chh-hhhhhhhccccccCcccccccchhhcccCcEEEEccCc
Confidence 1 2 11221 124432 557899999996443
No 171
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=21.46 E-value=65 Score=35.81 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=30.5
Q ss_pred cccccCCCcccchhhHHHHhhccHhHHHHHhcCCC
Q 003426 196 YVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPT 230 (821)
Q Consensus 196 ~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~ 230 (821)
.+|+.|.||-|.++|..|.+.++..+...+-....
T Consensus 178 ~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k 212 (420)
T KOG1871|consen 178 PRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQK 212 (420)
T ss_pred ccccccccccccccchhhcccccCchhhhcCCccc
Confidence 48999999999999999999999999887765443
No 172
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=21.42 E-value=2.4e+02 Score=20.77 Aligned_cols=55 Identities=18% Similarity=0.309 Sum_probs=34.6
Q ss_pred EEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEEE
Q 003426 711 FLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQ 774 (821)
Q Consensus 711 ~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ 774 (821)
.+....++.++...|.++.|.+++. ..|+..- ..++.........+.+|+.|.+-
T Consensus 13 ~~~~~~tv~~l~~~i~~~~~~~~~~-~~l~~~~--------~~~~~~~~~~~~~~~~~~~i~~~ 67 (69)
T cd00196 13 LVPSGTTVADLKEKLAKKLGLPPEQ-QRLLVNG--------KILPDSLTLEDYGLQDGDELVLV 67 (69)
T ss_pred EcCCCCcHHHHHHHHHHHHCcChHH-eEEEECC--------eECCCCCcHHHcCCCCCCEEEEE
Confidence 3456899999999999999966543 4444322 11222222245678888888764
No 173
>PF04921 XAP5: XAP5, circadian clock regulator; InterPro: IPR007005 These proteins are found in a wide range of eukaryotes. Their function is uncertain though they are nuclear proteins, possibly with DNA-binding activity.; GO: 0005634 nucleus
Probab=20.61 E-value=3e+02 Score=28.85 Aligned_cols=30 Identities=30% Similarity=0.486 Sum_probs=21.8
Q ss_pred cccccCCCcceEEEeeccccHHHHHHHHHHHh
Q 003426 584 YFDLVDHDKVRSFRVQKQTSFMAFKEEIAKEF 615 (821)
Q Consensus 584 ~~~l~~~~~~~~~~v~k~~~~~~~~~~v~~~~ 615 (821)
|||-.. +..+++|.|.+|+.+|.+...+.+
T Consensus 105 ywDGs~--hrr~v~vKKGdtI~~FL~~~r~~l 134 (239)
T PF04921_consen 105 YWDGSG--HRRTVRVKKGDTIWQFLEKCRKQL 134 (239)
T ss_pred EECCCC--CcceEEEcCCCCHHHHHHHHHHHH
Confidence 355433 345899999999999988776653
No 174
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=20.58 E-value=2.4e+02 Score=25.23 Aligned_cols=35 Identities=17% Similarity=0.417 Sum_probs=31.3
Q ss_pred cceEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 592 KVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 592 ~~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
....|+|.+++++..|.+.-++..|++.+.+||..
T Consensus 31 ~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlF 65 (99)
T KOG1769|consen 31 SVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLF 65 (99)
T ss_pred CEEEEEeecCChHHHHHHHHHHHcCCccceEEEEE
Confidence 34578999999999999999999999999999954
No 175
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=20.48 E-value=2.8e+02 Score=22.64 Aligned_cols=50 Identities=14% Similarity=0.152 Sum_probs=36.4
Q ss_pred EEEeecCCCC-eEEEeEEEEEecCCChHHHHHHHHHHc-CCCCCCcEEEE---Eee
Q 003426 693 FFKLYDPEKG-ELRYVGRLFLKSSSKPIEILRKLNQMA-GFDPDEEIELY---EEI 743 (821)
Q Consensus 693 flK~fd~~~~-~l~~~g~~~~~~~~~v~~l~~~i~~~~-g~p~~t~l~ly---EEi 743 (821)
.+++++...+ .+. -+.+.|+.+.+..+|-.++|+++ +.....+..|| +||
T Consensus 3 ~v~F~t~~~~~~~~-~~~~~VP~~~t~~~Ls~LvN~LL~~~~~~vpfdF~i~~~~l 57 (65)
T PF08154_consen 3 QVQFVTEDGEYEVP-GTPISVPSNITRKELSELVNQLLDDEEEPVPFDFLINGEEL 57 (65)
T ss_pred EEEEEcCCCCccCC-CCCEEEeCCCCHHHHHHHHHHHhccCCCCCcEEEEECCEEe
Confidence 4455555543 111 25567889999999999999999 88888888887 566
No 176
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=20.09 E-value=1.6e+02 Score=25.76 Aligned_cols=40 Identities=18% Similarity=0.349 Sum_probs=27.0
Q ss_pred EEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCcc
Q 003426 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPC 748 (821)
Q Consensus 709 ~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~ 748 (821)
.+-|+.+++++.++..|++.+++.++..|-+|=-=.|.|+
T Consensus 19 k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~sFaPs 58 (87)
T PF04110_consen 19 KFKISASQTFATVIAFLRKKLKLKPSDSLFLYINNSFAPS 58 (87)
T ss_dssp EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEEEE---
T ss_pred EEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcCccCCC
Confidence 4568899999999999999999999999999954334554
Done!