Query 003426
Match_columns 821
No_of_seqs 537 out of 2495
Neff 7.8
Searched_HMMs 29240
Date Tue Mar 26 00:48:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003426.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003426hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f1z_A Ubiquitin carboxyl-term 100.0 2.1E-96 7E-101 856.8 41.3 492 49-560 27-522 (522)
2 1nb8_A Ubiquitin carboxyl-term 100.0 8.9E-71 3E-75 610.4 32.5 353 191-560 1-353 (353)
3 2y6e_A Ubiquitin carboxyl-term 100.0 1.8E-58 6E-63 514.8 29.6 299 191-523 3-360 (367)
4 3nhe_A Ubiquitin carboxyl-term 100.0 3.9E-58 1.3E-62 507.5 26.5 301 189-524 2-345 (348)
5 2gfo_A Ubiquitin carboxyl-term 100.0 4.6E-57 1.6E-61 507.9 28.5 298 191-522 57-396 (396)
6 3i3t_A Ubiquitin carboxyl-term 100.0 2.8E-57 9.5E-62 502.1 23.2 293 194-523 1-352 (355)
7 2ayn_A Ubiquitin carboxyl-term 100.0 2E-56 7E-61 504.5 23.2 302 193-523 11-395 (404)
8 1vjv_A Ubiquitin carboxyl-term 100.0 1.2E-55 4.1E-60 500.0 28.4 299 191-522 19-414 (415)
9 3mhs_A Ubiquitin carboxyl-term 100.0 2E-53 7E-58 490.1 27.5 299 191-522 136-474 (476)
10 3ihp_A Ubiquitin carboxyl-term 100.0 9.7E-51 3.3E-55 492.1 27.1 224 191-421 339-622 (854)
11 2ylm_A Ubiquitin carboxyl-term 100.0 4.5E-45 1.5E-49 420.1 21.9 238 558-810 4-249 (530)
12 2foj_A Ubiquitin carboxyl-term 99.9 5.7E-26 2E-30 221.1 13.3 134 49-184 15-152 (155)
13 2vhf_A Ubiquitin carboxyl-term 99.9 1.6E-26 5.5E-31 247.2 8.9 220 196-471 9-308 (374)
14 3ivv_A Speckle-type POZ protei 99.9 2.4E-24 8.1E-29 207.2 11.9 129 48-181 6-144 (145)
15 2kvr_A Ubiquitin carboxyl-term 99.9 1.9E-24 6.4E-29 201.0 9.5 128 535-671 1-130 (130)
16 4gjh_A TNF receptor-associated 99.9 8.2E-24 2.8E-28 210.4 5.2 134 48-181 19-174 (178)
17 4ghu_A TNF receptor-associated 99.9 5.4E-23 1.8E-27 207.3 4.4 134 49-184 36-191 (198)
18 1ca9_A TRAF2, protein (TNF rec 99.9 1.4E-22 4.9E-27 204.1 4.6 130 50-181 40-191 (192)
19 1d00_A Tumor necrosis factor r 99.8 3.4E-22 1.2E-26 197.0 5.9 130 50-181 16-167 (168)
20 1lb6_A TNF receptor-associated 99.8 1.2E-21 4.2E-26 191.4 7.1 130 50-181 2-157 (160)
21 2gkw_A TNF receptor-associated 99.8 1.2E-21 4E-26 197.1 3.1 130 50-181 37-188 (192)
22 3hqi_A Speckle-type POZ protei 99.8 1.6E-20 5.3E-25 203.9 9.7 126 51-181 5-140 (312)
23 1flk_A TNF receptor associated 99.8 4.7E-21 1.6E-25 197.8 3.1 130 50-181 73-224 (228)
24 4gwm_A Meprin A subunit beta; 98.9 1.6E-09 5.4E-14 124.8 7.7 134 41-179 394-565 (592)
25 3mp2_A Non-structural protein 96.6 0.039 1.3E-06 54.5 14.8 190 187-478 4-195 (211)
26 3u30_A Ubiquitin, linear DI-ub 96.4 0.039 1.3E-06 53.4 13.3 133 594-773 33-165 (172)
27 3b08_A Polyubiquitin-C, ubiqui 96.4 0.051 1.7E-06 51.1 13.7 135 594-775 13-147 (152)
28 3rt3_B Ubiquitin-like protein 96.3 0.039 1.3E-06 52.6 13.0 138 594-775 15-152 (159)
29 2ylm_A Ubiquitin carboxyl-term 96.3 0.078 2.7E-06 60.7 17.0 136 593-743 254-391 (530)
30 2fe8_A PP1AB, ORF1AB, replicas 94.8 0.12 4E-06 54.4 10.5 200 187-478 93-295 (315)
31 2io1_B Small ubiquitin-related 92.2 0.41 1.4E-05 41.2 7.6 74 688-776 6-79 (94)
32 3goe_A DNA repair protein RAD6 91.3 0.46 1.6E-05 39.0 6.3 57 709-773 23-79 (82)
33 2io0_B Small ubiquitin-related 90.2 1 3.5E-05 38.5 8.1 73 689-776 5-77 (91)
34 3kyd_D Small ubiquitin-related 90.2 1 3.5E-05 40.2 8.3 70 691-773 40-109 (115)
35 1wm3_A Ubiquitin-like protein 89.8 1.2 4E-05 36.1 7.8 56 709-773 15-70 (72)
36 2k8h_A Small ubiquitin protein 89.6 0.73 2.5E-05 40.9 6.9 76 686-776 23-98 (110)
37 2kj6_A Tubulin folding cofacto 89.2 2.8 9.7E-05 36.1 10.2 83 687-775 12-94 (97)
38 2d07_B Ubiquitin-like protein 89.1 1 3.4E-05 38.7 7.2 73 687-774 15-87 (93)
39 3plu_A Ubiquitin-like modifier 89.0 0.81 2.8E-05 39.2 6.4 70 688-772 20-89 (93)
40 3a4r_A Nfatc2-interacting prot 88.5 0.63 2.2E-05 38.6 5.3 72 688-773 6-77 (79)
41 3dbh_I NEDD8; cell cycle, acti 88.4 1.3 4.6E-05 36.9 7.5 73 687-774 10-82 (88)
42 2eke_C Ubiquitin-like protein 88.3 1.5 5.2E-05 38.6 7.9 73 686-774 28-100 (106)
43 1wz0_A Ubiquitin-like protein 88.1 1.3 4.3E-05 38.9 7.3 74 687-775 22-95 (104)
44 1wjn_A Tubulin-folding protein 88.0 1.7 5.9E-05 37.3 8.1 67 710-777 27-93 (97)
45 4dbg_A Ranbp-type and C3HC4-ty 87.8 0.55 1.9E-05 41.3 4.7 36 592-628 37-72 (105)
46 3v6c_B Ubiquitin; structural g 87.8 1.7 5.7E-05 36.8 7.8 74 686-774 14-87 (91)
47 2jxx_A Nfatc2-interacting prot 87.4 1.8 6E-05 37.5 7.7 71 690-773 24-95 (97)
48 2dzi_A Ubiquitin-like protein 87.1 2.7 9.3E-05 34.3 8.6 72 688-774 6-77 (81)
49 2l76_A Nfatc2-interacting prot 87.0 0.59 2E-05 40.0 4.2 60 706-774 31-91 (95)
50 2uyz_B Small ubiquitin-related 86.7 0.99 3.4E-05 37.0 5.5 71 690-775 4-74 (79)
51 2kjr_A CG11242; UBL, ubiquitin 86.2 5.4 0.00019 34.2 10.1 81 687-774 13-93 (95)
52 3plu_A Ubiquitin-like modifier 86.1 0.85 2.9E-05 39.1 4.8 34 593-626 33-66 (93)
53 1wyw_B Ubiquitin-like protein 86.1 1.2 4.3E-05 38.3 6.1 74 687-775 19-92 (97)
54 3n3k_B Ubiquitin; hydrolase, p 86.0 1.4 4.8E-05 36.5 6.3 72 690-776 4-75 (85)
55 4hcn_B Polyubiquitin, ubiquiti 85.7 1.2 4.1E-05 38.4 5.8 74 686-774 19-92 (98)
56 4b6w_A Tubulin-specific chaper 85.4 2.3 7.8E-05 35.8 7.2 62 710-773 19-80 (86)
57 3mtn_B UBA80, ubcep1, ubiquiti 85.3 2.1 7E-05 35.4 7.0 73 689-776 3-75 (85)
58 1wx7_A Ubiquilin 3; ubiquitin- 85.2 3.8 0.00013 35.7 9.0 76 686-777 14-89 (106)
59 3phx_B Ubiquitin-like protein 85.0 1.9 6.6E-05 35.2 6.5 70 690-774 5-74 (79)
60 2bwf_A Ubiquitin-like protein 84.9 4.6 0.00016 32.5 8.8 70 690-775 5-74 (77)
61 2kjr_A CG11242; UBL, ubiquitin 84.8 1.1 3.7E-05 38.6 5.0 34 594-627 30-63 (95)
62 4b6w_A Tubulin-specific chaper 84.6 0.68 2.3E-05 39.1 3.5 34 594-627 17-50 (86)
63 3tix_A Ubiquitin-like protein 84.5 2.1 7.1E-05 41.6 7.2 74 686-775 54-127 (207)
64 1wh3_A 59 kDa 2'-5'-oligoadeny 83.5 3.9 0.00013 34.0 8.0 73 689-776 7-79 (87)
65 1j8c_A Ubiquitin-like protein 83.5 5.1 0.00017 36.2 9.2 75 687-777 30-104 (125)
66 2kj6_A Tubulin folding cofacto 83.4 1.3 4.4E-05 38.3 4.9 35 594-628 29-63 (97)
67 1v5o_A 1700011N24RIK protein; 83.1 4.5 0.00015 35.0 8.4 77 690-778 8-86 (102)
68 3jyu_A Ubiquitin carboxyl-term 83.0 3.3 0.00011 41.8 8.6 68 709-778 155-222 (231)
69 4a3p_A Ubiquitin carboxyl-term 83.0 3 0.0001 41.7 8.1 67 709-778 143-210 (217)
70 4fbj_B NEDD8; effector-HOST ta 82.7 2.1 7.3E-05 36.0 6.0 72 691-777 2-73 (88)
71 1uh6_A Ubiquitin-like 5; beta- 82.6 2.5 8.6E-05 36.7 6.4 70 688-772 27-96 (100)
72 1wx8_A Riken cDNA 4931431F19; 82.3 3.2 0.00011 35.4 7.1 72 688-775 16-87 (96)
73 2hj8_A Interferon-induced 17 k 82.0 4.3 0.00015 34.0 7.6 73 690-777 5-77 (88)
74 3n3k_B Ubiquitin; hydrolase, p 81.8 1.4 4.8E-05 36.5 4.4 33 594-626 16-48 (85)
75 1yqb_A Ubiquilin 3; structural 81.4 7 0.00024 33.7 8.9 76 686-777 19-94 (100)
76 2klc_A Ubiquilin-1; ubiquitin- 80.9 8 0.00027 33.4 9.1 73 688-776 24-96 (101)
77 3a9j_A Ubiquitin; protein comp 80.8 2.3 7.9E-05 34.1 5.3 59 709-776 14-72 (76)
78 1v6e_A Cytoskeleton-associated 80.7 1.3 4.5E-05 38.0 3.9 34 594-627 21-54 (95)
79 3mtn_B UBA80, ubcep1, ubiquiti 80.5 1.8 6.1E-05 35.8 4.7 33 594-626 16-48 (85)
80 2l7r_A Ubiquitin-like protein 80.2 3 0.0001 35.5 6.0 69 689-774 19-87 (93)
81 1ndd_A NEDD8, protein (ubiquit 79.7 2.7 9.2E-05 33.7 5.4 57 710-775 15-71 (76)
82 1wy8_A NP95-like ring finger p 79.2 7.9 0.00027 32.2 8.4 75 688-776 6-81 (89)
83 3phx_B Ubiquitin-like protein 79.2 2.3 7.9E-05 34.7 4.8 33 594-626 17-49 (79)
84 2faz_A Ubiquitin-like containi 79.0 8.9 0.00031 30.9 8.5 72 690-775 3-75 (78)
85 3a9j_A Ubiquitin; protein comp 79.0 2 6.9E-05 34.5 4.4 33 594-626 13-45 (76)
86 1t0y_A Tubulin folding cofacto 79.0 13 0.00044 33.3 10.2 83 689-778 6-88 (122)
87 1uh6_A Ubiquitin-like 5; beta- 79.0 2.4 8.1E-05 36.9 4.9 33 594-626 41-73 (100)
88 4dwf_A HLA-B-associated transc 78.9 4.3 0.00015 34.0 6.6 74 688-777 4-77 (90)
89 2kk8_A Uncharacterized protein 78.9 2.4 8.1E-05 35.5 4.8 33 594-626 23-55 (84)
90 2uyz_B Small ubiquitin-related 78.7 2.1 7.1E-05 35.0 4.4 33 594-626 16-48 (79)
91 2ojr_A Ubiquitin; lanthide-bin 78.6 6.9 0.00024 34.4 8.1 74 688-776 34-107 (111)
92 2kk8_A Uncharacterized protein 78.4 3.6 0.00012 34.3 5.8 71 689-774 10-81 (84)
93 4eew_A Large proline-rich prot 78.3 2.4 8.2E-05 35.5 4.8 33 594-626 30-62 (88)
94 1wju_A NEDD8 ultimate buster-1 78.3 2.2 7.4E-05 37.1 4.5 32 594-625 32-63 (100)
95 1wh3_A 59 kDa 2'-5'-oligoadeny 78.2 2.6 9E-05 35.0 5.0 32 595-626 21-52 (87)
96 2kzr_A Ubiquitin thioesterase 78.0 3.4 0.00011 34.6 5.6 62 712-777 17-78 (86)
97 1ttn_A DC-UBP, dendritic cell- 77.8 4.1 0.00014 35.6 6.3 77 686-777 20-96 (106)
98 3pge_A SUMO-modified prolifera 77.7 5.2 0.00018 39.3 7.5 76 685-776 25-101 (200)
99 4a3p_A Ubiquitin carboxyl-term 77.6 5 0.00017 40.0 7.7 68 593-673 141-209 (217)
100 2bwf_A Ubiquitin-like protein 77.2 2.7 9.3E-05 33.9 4.7 33 594-626 16-48 (77)
101 2hj8_A Interferon-induced 17 k 77.2 2.8 9.5E-05 35.2 4.9 33 594-626 17-49 (88)
102 1ndd_A NEDD8, protein (ubiquit 77.1 2.5 8.5E-05 33.9 4.4 33 594-626 13-45 (76)
103 1sif_A Ubiquitin; hydrophobic 76.8 2.4 8.3E-05 35.6 4.4 33 594-626 22-54 (88)
104 4dwf_A HLA-B-associated transc 76.6 3.1 0.0001 35.0 5.0 33 594-626 18-50 (90)
105 3dbh_I NEDD8; cell cycle, acti 76.5 2.3 7.8E-05 35.5 4.1 33 594-626 25-57 (88)
106 1v6e_A Cytoskeleton-associated 76.5 8.1 0.00028 32.9 7.7 81 689-776 7-87 (95)
107 2dzi_A Ubiquitin-like protein 76.4 3 0.0001 34.0 4.8 32 595-626 21-52 (81)
108 4fbj_B NEDD8; effector-HOST ta 76.4 2.4 8.1E-05 35.7 4.2 33 594-626 13-45 (88)
109 2wyq_A HHR23A, UV excision rep 76.4 8.6 0.00029 31.6 7.7 72 690-776 6-80 (85)
110 3m62_B UV excision repair prot 76.3 3.4 0.00012 36.1 5.4 72 691-777 3-74 (106)
111 3v6c_B Ubiquitin; structural g 76.3 2.6 9E-05 35.6 4.5 33 594-626 30-62 (91)
112 2kd0_A LRR repeats and ubiquit 76.2 5.1 0.00017 33.4 6.2 56 710-774 26-81 (85)
113 2kan_A Uncharacterized protein 76.2 3 0.0001 35.6 4.8 33 594-626 27-59 (94)
114 1oey_A P67-PHOX, neutrophil cy 76.1 2.8 9.7E-05 35.0 4.4 36 593-628 15-50 (83)
115 1t0y_A Tubulin folding cofacto 76.0 3.1 0.00011 37.5 5.1 34 594-627 20-53 (122)
116 3k9o_B Ubiquitin, UBB+1; E2-25 75.9 4.7 0.00016 34.2 6.1 72 691-777 3-74 (96)
117 2faz_A Ubiquitin-like containi 75.9 3.1 0.00011 33.8 4.7 32 595-626 17-49 (78)
118 2kd0_A LRR repeats and ubiquit 75.9 2.6 8.9E-05 35.2 4.3 32 594-625 24-55 (85)
119 1sif_A Ubiquitin; hydrophobic 75.9 3.8 0.00013 34.4 5.3 57 710-775 24-80 (88)
120 4eew_A Large proline-rich prot 75.7 5.6 0.00019 33.1 6.4 69 688-772 16-84 (88)
121 1qmy_A Protease, leader protea 75.3 1 3.6E-05 40.9 1.6 35 195-229 12-47 (167)
122 1v5o_A 1700011N24RIK protein; 75.3 2.8 9.6E-05 36.4 4.5 34 593-626 23-56 (102)
123 3k9o_B Ubiquitin, UBB+1; E2-25 74.8 2.9 9.9E-05 35.6 4.4 33 594-626 14-46 (96)
124 1wjn_A Tubulin-folding protein 74.5 2.8 9.4E-05 36.0 4.2 36 593-628 24-59 (97)
125 2l7r_A Ubiquitin-like protein 74.3 2.9 9.8E-05 35.6 4.2 32 595-626 31-62 (93)
126 4hcn_B Polyubiquitin, ubiquiti 74.0 2.9 9.9E-05 35.9 4.2 33 594-626 35-67 (98)
127 3vdz_A Ubiquitin-40S ribosomal 73.6 3.7 0.00013 36.2 4.9 33 594-626 48-80 (111)
128 2pjh_A Protein NPL4, nuclear p 73.4 3.4 0.00011 34.3 4.2 64 706-774 14-78 (80)
129 4a20_A Ubiquitin-like protein 73.1 11 0.00038 32.4 7.7 75 688-775 18-94 (98)
130 1yx5_B Ubiquitin; proteasome, 73.0 5.1 0.00017 34.2 5.6 59 710-777 15-73 (98)
131 1wf9_A NPL4 family protein; be 72.9 5.6 0.00019 34.8 5.9 79 690-776 8-94 (107)
132 1yqb_A Ubiquilin 3; structural 72.9 4 0.00014 35.3 4.8 32 595-626 35-66 (100)
133 1wyw_B Ubiquitin-like protein 72.7 3.5 0.00012 35.4 4.4 33 594-626 34-66 (97)
134 2kdi_A Ubiquitin, vacuolar pro 72.4 5.6 0.00019 35.3 5.8 60 710-778 24-83 (114)
135 3u30_A Ubiquitin, linear DI-ub 72.4 6.5 0.00022 37.4 6.7 76 686-776 17-92 (172)
136 4ajy_B Transcription elongatio 72.4 4.2 0.00014 36.4 4.8 32 595-626 15-46 (118)
137 3vdz_A Ubiquitin-40S ribosomal 72.4 8.1 0.00028 34.0 6.8 73 688-775 34-106 (111)
138 2bps_A YUKD protein; ubiquitin 71.9 6.3 0.00021 32.7 5.5 59 710-773 21-80 (81)
139 1wy8_A NP95-like ring finger p 71.8 4.7 0.00016 33.7 4.9 33 594-626 21-54 (89)
140 1v86_A DNA segment, CHR 7, way 71.6 2.6 9E-05 36.1 3.3 31 595-625 30-60 (95)
141 3a4r_A Nfatc2-interacting prot 71.6 4.5 0.00016 33.3 4.6 34 593-626 20-53 (79)
142 1wxv_A BAG-family molecular ch 70.6 25 0.00085 29.4 9.4 75 688-777 6-85 (92)
143 1yx5_B Ubiquitin; proteasome, 70.4 4.3 0.00015 34.7 4.4 33 594-626 13-45 (98)
144 2dzm_A FAS-associated factor 1 70.3 4.1 0.00014 35.4 4.2 31 594-624 21-51 (100)
145 2klc_A Ubiquilin-1; ubiquitin- 70.3 4.6 0.00016 35.0 4.6 33 594-626 37-69 (101)
146 1wx8_A Riken cDNA 4931431F19; 70.3 3.7 0.00013 35.0 4.0 32 595-626 30-61 (96)
147 1v5t_A 8430435I17RIK protein; 70.1 3.2 0.00011 35.1 3.5 31 595-625 20-51 (90)
148 1wx7_A Ubiquilin 3; ubiquitin- 69.3 5.5 0.00019 34.7 5.0 32 595-626 30-61 (106)
149 2kc2_A Talin-1, F1; FERM, adhe 69.1 12 0.00042 33.8 7.2 69 707-775 23-121 (128)
150 1wz0_A Ubiquitin-like protein 68.4 7.6 0.00026 33.9 5.6 34 593-626 36-69 (104)
151 3m63_B Ubiquitin domain-contai 68.4 3.1 0.00011 36.1 3.1 32 595-626 41-72 (101)
152 2ojr_A Ubiquitin; lanthide-bin 67.9 6 0.0002 34.8 5.0 33 594-626 48-80 (111)
153 1wxv_A BAG-family molecular ch 67.6 6.2 0.00021 33.3 4.8 32 595-626 20-56 (92)
154 1v5t_A 8430435I17RIK protein; 67.6 9.5 0.00032 32.1 6.0 75 689-776 7-82 (90)
155 2fnj_B Transcription elongatio 67.5 6.1 0.00021 35.3 4.8 31 595-625 15-45 (118)
156 2daf_A FLJ35834 protein; hypot 67.3 5.6 0.00019 35.4 4.5 61 594-673 29-89 (118)
157 1uel_A HHR23B, UV excision rep 67.3 11 0.00036 32.0 6.3 58 710-776 15-75 (95)
158 1wm3_A Ubiquitin-like protein 67.0 7 0.00024 31.4 4.8 34 593-626 13-46 (72)
159 1wgg_A Ubiquitin carboxyl-term 67.0 3.9 0.00013 35.1 3.4 30 596-625 22-51 (96)
160 2kan_A Uncharacterized protein 66.5 8.3 0.00028 32.8 5.4 73 688-776 14-87 (94)
161 3m63_B Ubiquitin domain-contai 66.5 5.7 0.00019 34.4 4.4 69 690-774 29-97 (101)
162 1wgd_A Homocysteine-responsive 66.0 5.9 0.0002 33.5 4.4 32 595-626 23-56 (93)
163 2kdi_A Ubiquitin, vacuolar pro 65.7 6.2 0.00021 35.0 4.6 34 593-626 21-54 (114)
164 2io0_B Small ubiquitin-related 64.7 9 0.00031 32.5 5.2 34 593-626 17-50 (91)
165 1ttn_A DC-UBP, dendritic cell- 64.5 5.7 0.0002 34.6 4.1 32 595-626 37-68 (106)
166 1j8c_A Ubiquitin-like protein 64.4 7.4 0.00025 35.1 4.9 32 595-626 45-76 (125)
167 1v86_A DNA segment, CHR 7, way 64.3 20 0.00068 30.4 7.4 72 687-775 15-86 (95)
168 2lxa_A Ubiquitin-like protein 64.0 4.5 0.00016 34.1 3.2 28 599-626 21-49 (87)
169 1we6_A Splicing factor, putati 64.0 14 0.00049 32.2 6.7 58 710-776 45-103 (111)
170 1wgg_A Ubiquitin carboxyl-term 63.9 27 0.00091 29.7 8.2 74 688-777 6-79 (96)
171 3uf8_A Ubiquitin-like protein 63.8 15 0.0005 36.3 7.4 71 686-772 18-88 (209)
172 1wju_A NEDD8 ultimate buster-1 63.4 26 0.0009 30.2 8.0 71 691-774 15-89 (100)
173 2io1_B Small ubiquitin-related 63.4 8.6 0.00029 32.8 4.9 34 593-626 19-52 (94)
174 2wyq_A HHR23A, UV excision rep 62.8 8.5 0.00029 31.6 4.7 32 595-626 19-53 (85)
175 3q3f_A Ribonuclease/ubiquitin 62.2 11 0.00039 36.6 6.1 72 690-776 106-177 (189)
176 1we7_A SF3A1 protein; structur 62.2 7.8 0.00027 34.3 4.6 34 593-626 47-80 (115)
177 3m62_B UV excision repair prot 61.8 5.1 0.00017 35.0 3.2 33 594-626 14-46 (106)
178 1we6_A Splicing factor, putati 61.8 8.5 0.00029 33.8 4.7 33 594-626 43-76 (111)
179 2d07_B Ubiquitin-like protein 61.8 11 0.00037 32.1 5.2 33 594-626 30-62 (93)
180 3kyd_D Small ubiquitin-related 61.6 10 0.00036 33.7 5.1 33 594-626 53-85 (115)
181 2k8h_A Small ubiquitin protein 60.8 8.6 0.00029 33.9 4.5 34 593-626 38-71 (110)
182 2eke_C Ubiquitin-like protein 60.3 11 0.00038 33.0 5.0 34 593-626 42-75 (106)
183 1wf9_A NPL4 family protein; be 60.0 5.9 0.0002 34.6 3.3 32 595-626 20-52 (107)
184 1we7_A SF3A1 protein; structur 58.7 14 0.00047 32.6 5.6 58 710-776 50-107 (115)
185 1uel_A HHR23B, UV excision rep 58.3 11 0.00038 32.0 4.7 32 595-626 14-48 (95)
186 3jyu_A Ubiquitin carboxyl-term 58.2 9.7 0.00033 38.3 5.0 67 594-673 154-221 (231)
187 3pge_A SUMO-modified prolifera 58.1 15 0.00051 36.0 6.1 34 593-626 40-73 (200)
188 2dzj_A Synaptic glycoprotein S 56.9 29 0.00098 29.0 7.0 73 690-773 11-85 (88)
189 3b08_A Polyubiquitin-C, ubiqui 56.0 17 0.00059 33.3 6.0 60 709-777 14-73 (152)
190 2daf_A FLJ35834 protein; hypot 55.5 14 0.00047 32.9 4.8 74 690-777 16-89 (118)
191 2dzj_A Synaptic glycoprotein S 55.1 10 0.00034 31.9 3.8 31 595-625 26-58 (88)
192 3l0w_B Monoubiquitinated proli 55.0 12 0.00042 35.6 4.8 33 594-626 13-45 (169)
193 2kzr_A Ubiquitin thioesterase 53.8 6.6 0.00023 32.7 2.4 28 598-625 17-44 (86)
194 4a20_A Ubiquitin-like protein 53.6 9.9 0.00034 32.7 3.6 31 596-626 36-67 (98)
195 3l0w_B Monoubiquitinated proli 53.1 18 0.00061 34.4 5.7 57 710-775 15-71 (169)
196 3b1l_X E3 ubiquitin-protein li 58.0 2.9 9.9E-05 33.7 0.0 32 595-626 14-45 (76)
197 1wgd_A Homocysteine-responsive 52.5 34 0.0012 28.6 6.8 75 689-776 7-85 (93)
198 3b1l_X E3 ubiquitin-protein li 57.4 3 0.0001 33.6 0.0 55 710-773 15-69 (76)
199 4gdk_A Ubiquitin-like protein 51.7 97 0.0033 26.1 9.4 66 593-673 21-86 (91)
200 2jxx_A Nfatc2-interacting prot 51.0 19 0.00064 31.0 4.8 34 593-626 38-71 (97)
201 1v2y_A 3300001G02RIK protein; 50.0 15 0.0005 32.1 4.1 76 690-779 8-98 (105)
202 3v7o_A Minor nucleoprotein VP3 47.9 3.8 0.00013 40.3 0.0 56 709-773 34-89 (227)
203 2kdb_A Homocysteine-responsive 47.2 16 0.00055 31.4 3.9 32 595-626 39-72 (99)
204 3q3f_A Ribonuclease/ubiquitin 46.5 17 0.00057 35.4 4.3 33 594-626 118-150 (189)
205 3rt3_B Ubiquitin-like protein 46.2 25 0.00085 32.7 5.4 72 691-776 4-76 (159)
206 2l76_A Nfatc2-interacting prot 46.1 21 0.00073 30.4 4.3 35 592-626 31-65 (95)
207 3u5e_m 60S ribosomal protein L 44.3 4.7 0.00016 36.5 0.0 59 710-777 15-73 (128)
208 2kdb_A Homocysteine-responsive 44.1 43 0.0015 28.6 6.2 72 688-772 22-97 (99)
209 4dbg_A Ranbp-type and C3HC4-ty 43.7 42 0.0014 29.2 6.0 58 706-772 37-95 (105)
210 4gdk_A Ubiquitin-like protein 43.1 28 0.00094 29.5 4.6 31 710-740 24-54 (91)
211 1wgr_A Growth factor receptor- 42.0 53 0.0018 28.3 6.3 79 692-777 10-93 (100)
212 3u5e_m 60S ribosomal protein L 41.0 5.7 0.00019 36.0 0.0 32 595-626 14-45 (128)
213 1x1m_A Ubiquitin-like protein 40.7 45 0.0015 28.8 5.9 54 715-777 44-100 (107)
214 3u5c_f 40S ribosomal protein S 40.5 5.9 0.0002 37.2 0.0 58 710-776 15-72 (152)
215 4efo_A Serine/threonine-protei 40.5 29 0.00099 29.6 4.3 35 592-626 24-58 (94)
216 1x1m_A Ubiquitin-like protein 40.0 29 0.001 30.0 4.5 26 601-626 44-72 (107)
217 3goe_A DNA repair protein RAD6 39.9 37 0.0013 27.9 4.6 46 594-643 22-68 (82)
218 3ai5_A Yeast enhanced green fl 39.5 56 0.0019 34.1 7.3 72 688-774 232-303 (307)
219 3rui_B Autophagy-related prote 38.3 39 0.0013 30.1 5.0 31 710-740 51-81 (118)
220 3u5c_f 40S ribosomal protein S 36.9 7.2 0.00025 36.5 0.0 32 595-626 14-45 (152)
221 3shq_A UBLCP1; phosphatase, hy 36.4 25 0.00086 37.1 4.1 31 595-625 18-48 (320)
222 4ajy_B Transcription elongatio 35.4 45 0.0015 29.6 4.9 55 711-774 17-78 (118)
223 4efo_A Serine/threonine-protei 35.0 80 0.0028 26.8 6.2 49 691-742 12-60 (94)
224 3m95_A Autophagy related prote 34.9 41 0.0014 30.3 4.6 32 709-740 56-87 (125)
225 3tix_A Ubiquitin-like protein 33.4 38 0.0013 32.9 4.3 34 593-626 68-101 (207)
226 3ai5_A Yeast enhanced green fl 32.8 35 0.0012 35.7 4.5 33 594-626 246-278 (307)
227 3h9d_A ATG8, microtubule-assoc 32.4 45 0.0015 29.7 4.4 31 710-740 52-82 (119)
228 2r2q_A Gamma-aminobutyric acid 31.1 53 0.0018 28.8 4.7 32 709-740 47-78 (110)
229 2daj_A KIAA0977 protein, COBL- 30.2 47 0.0016 27.6 3.8 52 710-767 25-76 (91)
230 1wia_A Hypothetical ubiquitin- 30.2 1.8E+02 0.0061 24.0 7.9 72 688-777 6-78 (95)
231 2lxa_A Ubiquitin-like protein 30.1 52 0.0018 27.4 4.2 70 691-773 3-74 (87)
232 2zjd_A Microtubule-associated 30.0 59 0.002 29.4 4.8 32 709-740 56-88 (130)
233 3uf8_A Ubiquitin-like protein 29.8 56 0.0019 32.1 5.2 46 594-639 33-78 (209)
234 3ix6_A TS, tsase, thymidylate 28.9 12 0.0004 40.1 0.0 74 687-776 19-92 (360)
235 2pjh_A Protein NPL4, nuclear p 28.9 30 0.001 28.4 2.5 30 595-624 17-46 (80)
236 2xzm_9 RPS31E; ribosome, trans 28.8 12 0.0004 36.4 0.0 32 595-626 14-45 (189)
237 1eo6_A GATE-16, golgi-associat 28.7 55 0.0019 29.0 4.4 32 709-740 48-79 (117)
238 2fnj_B Transcription elongatio 28.4 54 0.0018 29.1 4.2 55 710-773 16-77 (118)
239 3w1s_C Ubiquitin-like protein 25.9 2.9E+02 0.01 23.1 8.4 61 594-672 25-85 (91)
240 2dzm_A FAS-associated factor 1 25.5 66 0.0023 27.6 4.2 70 690-773 9-78 (100)
241 1wz3_A Autophagy 12B, ATG12B, 23.8 1.9E+02 0.0065 24.5 6.7 69 592-678 28-96 (96)
242 1se9_A Ubiquitin family; ubiqu 23.7 2.4E+02 0.0081 25.3 7.6 69 688-769 15-89 (126)
243 1v2y_A 3300001G02RIK protein; 23.7 31 0.001 30.0 1.7 27 594-620 20-46 (105)
244 1oqy_A HHR23A, UV excision rep 20.7 71 0.0024 34.3 4.2 67 690-771 8-77 (368)
245 2dzk_A UBX domain-containing p 20.2 1.2E+02 0.004 26.4 4.8 49 597-653 29-77 (109)
No 1
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=2.1e-96 Score=856.80 Aligned_cols=492 Identities=47% Similarity=0.797 Sum_probs=435.7
Q ss_pred CCCCcEEEEEEcCccccCCCeeecCcEEEcceEEEEEEEECCC----CCCcEEEEEEecCCCCCCCCceEEEEEEEEEEe
Q 003426 49 DPPTMKFTWTIENFSRLNTKKHYSDVFVVGGYKWRILIFPKGN----NVDHLSMYLDVADSGTLPYGWSRYAQFSLAVVN 124 (821)
Q Consensus 49 ~~~~~~~tw~I~n~S~l~~~~~~Sp~f~vgg~~W~I~~yP~G~----~~~~lSvyL~~~~~~~~~~~W~v~a~f~l~L~n 124 (821)
....++|+|+|+|||.++ +.++|++|.+||++|+|++||+|+ +.+|||+||+|.+. ..+.+|+|+|+|.|+|+|
T Consensus 27 ~~~~~~~~w~I~nfS~~~-~~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~l~n 104 (522)
T 2f1z_A 27 WRSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIIN 104 (522)
T ss_dssp CCSEEEEEEEESSCTTCC-SCEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEEECC
T ss_pred ccCCcEEEEEECChhhcC-CceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEEEEc
Confidence 345799999999999998 499999999999999999999995 44799999999877 446789999999999999
Q ss_pred cCCCceeeeeccceeecCCCCCceeccccCCCcccCCCCCccccccceeeeeeeeeeccccccccCCCCcccccccCCCc
Q 003426 125 QIHSKYSIRKDTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKVLDYWSYDSKKETGYVGLKNQGA 204 (821)
Q Consensus 125 ~~~~~~~~~~~~~~~F~~~~~dwG~~~Fi~~~~L~~~~~gfl~dD~l~I~~~V~v~~~~~~~~~~sk~~~g~~GL~N~Gn 204 (821)
+.++..+..+...|+|...+.+|||.+||++++|.++++|||.||+++|+|+|+|.. +....|++++.+|++||.|+||
T Consensus 105 ~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~-p~g~~~~~~~~~g~~GL~NlGn 183 (522)
T 2f1z_A 105 YRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADA-PHGVAWDSKKHTGYVGLKNQGA 183 (522)
T ss_dssp TTCGGGCEEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECC-CBSSCCCTTTTTSCCCBCCC--
T ss_pred CCCCccceeccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccc-cccccCCccccCCccceecCcc
Confidence 998877777788899988888999999999999988889999999999999999965 4456789999999999999999
Q ss_pred ccchhhHHHHhhccHhHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhHHHhhCCCCCCccccCcHHHHH
Q 003426 205 TCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELN 284 (821)
Q Consensus 205 TCYlNS~LQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~~~~~~~~~Q~Da~Ef~ 284 (821)
||||||+||+|+++|+||++++.++.. ......+++++|++||..|+.+..++.+..|+++|+|..+..++|||||||+
T Consensus 184 TCYmNSvLQ~L~~~~~fr~~~~~~~~~-~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~~~~~~~~~QqDa~Efl 262 (522)
T 2f1z_A 184 TCYMNSLLQTLFFTNQLRKAVYMMPTE-GDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWETLDSFMQHDVQELC 262 (522)
T ss_dssp CTTHHHHHHHHHTCHHHHHHHHTCCCC-SSCTTTCHHHHHHHHHHHHHHCSSCBCCTTHHHHTCCCTTTSSTTSCHHHHH
T ss_pred cHHHHHHHHHHhccHHHHHHHhhcccc-CCcccchHHHHHHHHHHHHhcCCCccCcHHHHhhcCCccCCCcccccHHHHH
Confidence 999999999999999999999987753 3344568999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcccccccccceeEEeeEEEEeccCceeeeeeeeeeEEEeeCCCCCHHHHHHHhhhhecccCCCccc
Q 003426 285 RVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYH 364 (821)
Q Consensus 285 ~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l~l~v~~~~~l~esL~~~~~~E~l~g~n~y~ 364 (821)
+.||+.|+++++++...+.|.++|+|++.+.++|..|++.+.+.|+|++|+|+|++..+|.++|+.|+.+|.++|+|+|.
T Consensus 263 ~~LLd~L~~~l~~~~~~s~i~~lF~G~~~s~i~C~~C~~~s~~~e~f~~LsL~i~~~~~l~~~L~~~~~~E~l~~~n~~~ 342 (522)
T 2f1z_A 263 RVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYD 342 (522)
T ss_dssp HHHHHHHHHHHTTSTTTTHHHHHHCEEEEEEECCSSSCCCCCEEEEESCEEECCTTCCBHHHHHHHHTCEEEECTTSCBC
T ss_pred HHHHHHHHhhccCCccccchhhheeEEEEEEEEcCCCCceeeeeeeeEEEEEEeCCcccchHHHHHhhceeecCCcceee
Confidence 99999999999988888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCeeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCccccCCccCCCCCCCCcCCCCCccEEEeEEEE
Q 003426 365 AEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLV 444 (821)
Q Consensus 365 c~~c~~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVIv 444 (821)
|+.|+++.|.|+..|.++|+||+|||+||.|+..++...|++++|+||..||| ++|+.... ...+..|+|+|||+
T Consensus 343 C~~c~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ldl----~~~~~~~~-~~~~~~Y~L~avv~ 417 (522)
T 2f1z_A 343 AGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPL----DEFLQKTD-PKDPANYILHAVLV 417 (522)
T ss_dssp CGGGCSBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEEC----GGGBSSCC-TTSCCEEEEEEEEE
T ss_pred cCcCCccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeecc----hhhhcccc-CCCCcEEEEEEEEE
Confidence 99999999999999999999999999999999888889999999999999999 67766432 23467899999999
Q ss_pred EeecCCCccEEEEEEeCCCCCEEEeeCCceeEcchHhHHHhhcCCCCCCCCCCCCCCCCCcccccCccEEEEEEEeeccc
Q 003426 445 HSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRESDK 524 (821)
Q Consensus 445 H~G~~~~GHY~ayir~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~~~ 524 (821)
|.|++++|||+||+|+..+++||+|||+.|++++.++|+..+|||.+... ......+||||||+|.+..
T Consensus 418 H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~-----------~~~~~~~aYiLfY~r~~~~ 486 (522)
T 2f1z_A 418 HSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDL-----------SVRHCTNAYMLVYIRESKL 486 (522)
T ss_dssp EECSSSCSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC-------------------CEEEEEEEEEETTSH
T ss_pred ecccCCCceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhcCCCcccc-----------ccCcCCceEEEEEEECCch
Confidence 99999999999999986689999999999999999999999999975311 1122468999999999999
Q ss_pred ccccccCCccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 003426 525 DKIICNVDEKDIAEHLRIRLKKEQEEKEDKRRYKAQ 560 (821)
Q Consensus 525 ~~~~~~~~~~~ip~~l~~~~~~e~~~~~~~~~e~~~ 560 (821)
++++.++.+.+||+++.+++++|+++.++++||++|
T Consensus 487 ~~~~~~~~~~~ip~~~~~~~~~e~~~~~~~~~~~~~ 522 (522)
T 2f1z_A 487 SEVLQAVTDHDIPQQLVERLQEEKRIEAQKRKERQE 522 (522)
T ss_dssp HHHTCCCCTTTSCSHHHHHHHHTTTCC---------
T ss_pred HHhhcccCccCCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999888875
No 2
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=8.9e-71 Score=610.43 Aligned_cols=353 Identities=54% Similarity=0.912 Sum_probs=309.7
Q ss_pred CCCcccccccCCCcccchhhHHHHhhccHhHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhHHHhhCCC
Q 003426 191 KKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWD 270 (821)
Q Consensus 191 k~~~g~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~~~ 270 (821)
|+.+|++||.|+||||||||+||+|+++|+||++++..+.. ......+++++|++||..|+.+..++.+..|+++|+|.
T Consensus 1 k~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~-~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~~~ 79 (353)
T 1nb8_A 1 KKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE-GDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWE 79 (353)
T ss_dssp CCCSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCT-TSCTTTCHHHHHHHHHHHHHHCSSCBCCHHHHHHHTCC
T ss_pred CCCCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCC-CCcccccHHHHHHHHHHHHhhcCCCCCCHHHHhhcCCC
Confidence 57899999999999999999999999999999999987652 33445689999999999999998999999999999999
Q ss_pred CCCccccCcHHHHHHHHHHHHHHHhcCCcccccccccceeEEeeEEEEeccCceeeeeeeeeeEEEeeCCCCCHHHHHHH
Q 003426 271 TYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDK 350 (821)
Q Consensus 271 ~~~~~~Q~Da~Ef~~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l~l~v~~~~~l~esL~~ 350 (821)
.+..++|||||||++.||+.|+++++++...+.|.++|+|++.+.++|..|++.+.+.|+|++|+|+|++..++.++|+.
T Consensus 80 ~~~~~~QqDA~EFl~~LLd~L~~~~~~~~~~s~i~~~F~g~~~~~i~C~~C~~~s~~~e~f~~LsL~i~~~~~l~~~L~~ 159 (353)
T 1nb8_A 80 TLDSFMQHDVQELCRVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVD 159 (353)
T ss_dssp BTTTTTTSCHHHHHHHHHHHHHHHTTTSTTTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESCEEECCTTCSBHHHHHHH
T ss_pred CCCcccchhHHHHHHHHHHHHHHHhcCCCccchhhhhceeEEEEEEEeccCCCeeceeeeeEEEEEEECCCcchHHHHHH
Confidence 99999999999999999999999999888888999999999999999999999999999999999999999999999999
Q ss_pred hhhhecccCCCccccccCCeeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCccccCCccCCCCCCCCcC
Q 003426 351 YVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDAD 430 (821)
Q Consensus 351 ~~~~E~l~g~n~y~c~~c~~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~~ 430 (821)
|+.+|.++|+|+|.|+.|+++.|.|+..|.++|+||+|||+||.|+..++...|+++.|.||..||| ++|+....
T Consensus 160 ~~~~E~l~~~~~~~C~~c~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl----~~~~~~~~- 234 (353)
T 1nb8_A 160 YVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPL----DEFLQKTD- 234 (353)
T ss_dssp HTCCEEECTTTCEECGGGCEECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEEC----GGGBSSCC-
T ss_pred hhCccccCCCccccCCcCccEeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeeh----hhhhcccC-
Confidence 9999999999999999999999999999999999999999999999877788999999999999999 67765432
Q ss_pred CCCCccEEEeEEEEEeecCCCccEEEEEEeCCCCCEEEeeCCceeEcchHhHHHhhcCCCCCCCCCCCCCCCCCcccccC
Q 003426 431 RSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKY 510 (821)
Q Consensus 431 ~~~~~~Y~L~gVIvH~G~~~~GHY~ayir~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~~~~~~~~~~ 510 (821)
...+..|+|+|||+|.|++++|||+||+|+..+++||+|||+.|+++++++|+..+|||.+... .....
T Consensus 235 ~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~-----------~~~~~ 303 (353)
T 1nb8_A 235 PKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDL-----------SVRHC 303 (353)
T ss_dssp TTSCCEEEEEEEEEEESSTTCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC------------------CC
T ss_pred CCCCceEEEEEEEEEeCCCCCcEEEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCCcccc-----------ccCcC
Confidence 2345789999999999999999999999986689999999999999999999999999975311 11123
Q ss_pred ccEEEEEEEeecccccccccCCccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 003426 511 SNAYMLVYIRESDKDKIICNVDEKDIAEHLRIRLKKEQEEKEDKRRYKAQ 560 (821)
Q Consensus 511 ~~AYmL~Y~R~~~~~~~~~~~~~~~ip~~l~~~~~~e~~~~~~~~~e~~~ 560 (821)
.+||||||+|.+..++++.++.+.+||+++.+++.+|++..++++||++|
T Consensus 304 ~~aYiLfY~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 353 (353)
T 1nb8_A 304 TNAYMLVYIRESKLSEVLQAVTDHDIPQQLVERLQEEKRIEAQKRKERQE 353 (353)
T ss_dssp EEEEEEEEEETTTHHHHTCCCCGGGSCHHHHHHHHHHHHHHHCC------
T ss_pred CeEEEEEEEECchhhhhhcccCccccCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 68999999999999999999999999999999999999998888888765
No 3
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.8e-58 Score=514.80 Aligned_cols=299 Identities=25% Similarity=0.395 Sum_probs=259.0
Q ss_pred CCCcccccccCCCcccchhhHHHHhhccHhHHHHHhcCCCCC---CC---CCCCCHHHHHHHHHHHHhcCC-CcccchhH
Q 003426 191 KKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTE---ND---LPSGSIPLALQSLFYKLQYND-TSVATKEL 263 (821)
Q Consensus 191 k~~~g~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~---~~---~~~~~~~~~Lq~Lf~~l~~s~-~~v~~~~l 263 (821)
...+|++||.|+||||||||+||+|+++|+||++++...... .. .....+..+|+.||..|+.+. .+++|..|
T Consensus 3 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~ 82 (367)
T 2y6e_A 3 HIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMF 82 (367)
T ss_dssp -CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHH
T ss_pred CCCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHH
Confidence 356899999999999999999999999999999998643211 11 123468899999999999864 68999999
Q ss_pred HHhhCC--CCCCccccCcHHHHHHHHHHHHHHHhcCCc-----------------------------ccccccccceeEE
Q 003426 264 TKSFGW--DTYDSFMQHDVQELNRVLCEKLEDKMKGTV-----------------------------VEGTIQQLFEGHH 312 (821)
Q Consensus 264 ~~~~~~--~~~~~~~Q~Da~Ef~~~Lld~Le~~~~~~~-----------------------------~~~~i~~lF~g~~ 312 (821)
.+++++ +.|..++|||||||++.|||.|+++++... ..+.|.++|+|++
T Consensus 83 ~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l 162 (367)
T 2y6e_A 83 KTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLF 162 (367)
T ss_dssp HHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEE
T ss_pred HHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEE
Confidence 999874 568889999999999999999999986421 1346889999999
Q ss_pred eeEEEEeccCceeeeeeeeeeEEEeeCCC-------------------CCHHHHHHHhhhhecccCCCccccccCC-eee
Q 003426 313 MNYIECINVDYKSTRKESFYDLQLDVKGC-------------------RDVYASFDKYVEVERLEGDNKYHAEEHG-LQD 372 (821)
Q Consensus 313 ~~~i~C~~c~~~s~~~e~f~~l~l~v~~~-------------------~~l~esL~~~~~~E~l~g~n~y~c~~c~-~~~ 372 (821)
.+.++|..|++.+.+.|+|++|+|+|+.. .+|+++|+.|+.+|.++|+|+|.|++|+ ++.
T Consensus 163 ~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~ 242 (367)
T 2y6e_A 163 KSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQ 242 (367)
T ss_dssp EEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEEEC
T ss_pred eeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCCce
Confidence 99999999999999999999999999743 4799999999999999999999999997 578
Q ss_pred eeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCc-cccCCccCCCCCCCCcCCCCCccEEEeEEEEEeecCCC
Q 003426 373 AKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPL-QLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHG 451 (821)
Q Consensus 373 a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~-~Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVIvH~G~~~~ 451 (821)
|.|+..|.++|+||+|||+||.|+. ....|+++.|+||. .||| ++|+..... ....|+|+|||+|.|+.++
T Consensus 243 a~K~~~i~~lP~vL~i~LkRF~~~~--~~~~K~~~~v~fp~~~Ldl----~~~~~~~~~--~~~~Y~L~avv~H~G~~~~ 314 (367)
T 2y6e_A 243 ATKKFDLWSLPKILVVHLKRFSYNR--YWRDKLDTVVEFPIRGLNM----SEFVCNLSA--RPYVYDLIAVSNHYGAMGV 314 (367)
T ss_dssp CEEEEEEEECCSEEEEEEECEEECS--SCEEECCCCEECCSSCEEC----GGGBSCSSS--CCCEEEEEEEEEEECSSSS
T ss_pred EEEEEEEecCCcEEEEEEeCeeecC--ccceecCceEEecCCcCCh----hhhccCCCC--CCceEEEEEEeecCCCCCC
Confidence 9999999999999999999999973 45789999999997 6999 777765432 3578999999999999999
Q ss_pred ccEEEEEEeCCCCCEEEeeCCceeEcchHhHHHhhcCCCCCCCCCCCCCCCCCcccccCccEEEEEEEeecc
Q 003426 452 GHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRESD 523 (821)
Q Consensus 452 GHY~ayir~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~~ 523 (821)
|||+||+|...+++||+|||+.|++++.++|+. .+||||||+|++.
T Consensus 315 GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~--------------------------~~aYiLfY~r~~~ 360 (367)
T 2y6e_A 315 GHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVT--------------------------KAAYVLFYQRRDD 360 (367)
T ss_dssp CEEEEEEECTTTCCEEEEETTEEEECCGGGTSS--------------------------TTEEEEEEEECCC
T ss_pred CeeeEEEEcCCCCeEEEECCCCceECCHHHcCC--------------------------CCcEEEEEEEcCC
Confidence 999999999778999999999999999888853 4899999999874
No 4
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=3.9e-58 Score=507.53 Aligned_cols=301 Identities=27% Similarity=0.429 Sum_probs=258.7
Q ss_pred cCCCCcccccccCCCcccchhhHHHHhhccHhHHHHHhcCCCC----CCCCCCCCHHHHHHHHHHHHhc--CCCcccchh
Q 003426 189 DSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTT----ENDLPSGSIPLALQSLFYKLQY--NDTSVATKE 262 (821)
Q Consensus 189 ~sk~~~g~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~----~~~~~~~~~~~~Lq~Lf~~l~~--s~~~v~~~~ 262 (821)
++++.+|++||.|+||||||||+||+|+++|+||+++++.... .......++..+|+.||..|+. ....++|..
T Consensus 2 ~sk~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~ 81 (348)
T 3nhe_A 2 NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSE 81 (348)
T ss_dssp ----CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCCTTCEECCHH
T ss_pred CCCCCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcCCCCCccCHHH
Confidence 5788999999999999999999999999999999999864221 1122345788999999999984 447899999
Q ss_pred HHHhhC--CCCCCccccCcHHHHHHHHHHHHHHHhcCCc-----------------------------ccccccccceeE
Q 003426 263 LTKSFG--WDTYDSFMQHDVQELNRVLCEKLEDKMKGTV-----------------------------VEGTIQQLFEGH 311 (821)
Q Consensus 263 l~~~~~--~~~~~~~~Q~Da~Ef~~~Lld~Le~~~~~~~-----------------------------~~~~i~~lF~g~ 311 (821)
|.++++ .+.+..+.|||||||++.||+.|+++++... ..+.|.++|+|+
T Consensus 82 ~~~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~ 161 (348)
T 3nhe_A 82 FKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQ 161 (348)
T ss_dssp HHHHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEE
T ss_pred HHHHHHHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccceE
Confidence 999886 3567888999999999999999999986432 124588999999
Q ss_pred EeeEEEEeccCceeeeeeeeeeEEEeeCCCC----CHHHHHHHhhhhecccCCCccccccCC-eeeeeeeEEEecCCCee
Q 003426 312 HMNYIECINVDYKSTRKESFYDLQLDVKGCR----DVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVL 386 (821)
Q Consensus 312 ~~~~i~C~~c~~~s~~~e~f~~l~l~v~~~~----~l~esL~~~~~~E~l~g~n~y~c~~c~-~~~a~k~~~~~~lP~vL 386 (821)
+.+.++|..|++.+.+.|+|++|+|+++... +|+++|+.|+.+|.++|+|+|.|++|+ ++.|.|+..|.++|++|
T Consensus 162 ~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL 241 (348)
T 3nhe_A 162 LKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKIL 241 (348)
T ss_dssp EEEEEEETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEEEEEECCSEE
T ss_pred EEEEEEcCCCCCEeeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceEecCCCceECCCCCCcccEEEEEEeecCCceE
Confidence 9999999999999999999999999998743 899999999999999999999999997 57899999999999999
Q ss_pred EEEEEEEEEcccccceeccCceEeCC-ccccCCccCCCCCCCCcCCCCCccEEEeEEEEEeecCCCccEEEEEEeCCCCC
Q 003426 387 QLQLKRFEYDFMRDAMVKINDRYEFP-LQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQ 465 (821)
Q Consensus 387 ~i~L~Rf~~d~~~~~~~Ki~~~v~fP-~~Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVIvH~G~~~~GHY~ayir~~~~~~ 465 (821)
+|||+||.++ +....|+++.|+|| ..||| ++|+..+. ....|+|+|||+|.|++++|||+||+|...+++
T Consensus 242 ~i~lkRf~~~--~~~~~K~~~~v~fp~~~ldl----~~~~~~~~---~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~~~ 312 (348)
T 3nhe_A 242 VLHLKRFSES--RIRTSKLTTFVNFPLRDLDL----REFASENT---NHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGE 312 (348)
T ss_dssp EEEECCBCCC--SSCCCBCCCCEECCSSCEEC----GGGBCTTC---CCCEEEEEEEEEEEECSSCEEEEEEEECTTTCC
T ss_pred EEEEEccccc--CCceeecCcceeccCCcCCH----hhhcCCCC---CCCcEEEEEEEEccCCCCCcccEEEEccCCCCc
Confidence 9999999875 46779999999999 57999 67776543 356899999999999999999999999977899
Q ss_pred EEEeeCCceeEcchHhHHHhhcCCCCCCCCCCCCCCCCCcccccCccEEEEEEEeeccc
Q 003426 466 WYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRESDK 524 (821)
Q Consensus 466 W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~~~ 524 (821)
||+|||+.|++++.++|.. .+||||||+|.+..
T Consensus 313 W~~~nD~~V~~v~~~~v~~--------------------------~~aY~LfY~r~~~~ 345 (348)
T 3nhe_A 313 WHTFNDSSVTPMSSSQVRT--------------------------SDAYLLFYELASPP 345 (348)
T ss_dssp EEEEETTEEEEECGGGTCC--------------------------TTEEEEEEEECC--
T ss_pred EEEEeCCCceECCHHHcCC--------------------------CCceEEEEEecCCC
Confidence 9999999999999988842 48999999998753
No 5
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=4.6e-57 Score=507.87 Aligned_cols=298 Identities=29% Similarity=0.474 Sum_probs=258.0
Q ss_pred CCCcccccccCCCcccchhhHHHHhhccHhHHHHHhcCCC------CCCCCCCCCHHHHHHHHHHHHhcCC-CcccchhH
Q 003426 191 KKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPT------TENDLPSGSIPLALQSLFYKLQYND-TSVATKEL 263 (821)
Q Consensus 191 k~~~g~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~------~~~~~~~~~~~~~Lq~Lf~~l~~s~-~~v~~~~l 263 (821)
...+|++||.|+||||||||+||+|+++|+||++++.... .........++.+++.|+..|+.+. ..++|..|
T Consensus 57 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f 136 (396)
T 2gfo_A 57 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDF 136 (396)
T ss_dssp CSSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHH
T ss_pred CCCCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHH
Confidence 3478999999999999999999999999999999976321 1111123467889999999998865 67899999
Q ss_pred HHhhCC--CCCCccccCcHHHHHHHHHHHHHHHhcCCc-----------------------------ccccccccceeEE
Q 003426 264 TKSFGW--DTYDSFMQHDVQELNRVLCEKLEDKMKGTV-----------------------------VEGTIQQLFEGHH 312 (821)
Q Consensus 264 ~~~~~~--~~~~~~~Q~Da~Ef~~~Lld~Le~~~~~~~-----------------------------~~~~i~~lF~g~~ 312 (821)
..++++ +.|..++|||||||++.|||.|++++++.. ..+.|.++|+|++
T Consensus 137 ~~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l 216 (396)
T 2gfo_A 137 KITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQF 216 (396)
T ss_dssp HHHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEE
T ss_pred HHHHHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccchhhCcEE
Confidence 988863 568889999999999999999999986532 2356889999999
Q ss_pred eeEEEEeccCceeeeeeeeeeEEEeeCCC--CCHHHHHHHhhhhecccCCCccccccCC-eeeeeeeEEEecCCCeeEEE
Q 003426 313 MNYIECINVDYKSTRKESFYDLQLDVKGC--RDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQ 389 (821)
Q Consensus 313 ~~~i~C~~c~~~s~~~e~f~~l~l~v~~~--~~l~esL~~~~~~E~l~g~n~y~c~~c~-~~~a~k~~~~~~lP~vL~i~ 389 (821)
.+.++|..|++.+.+.|+|++|+|+|+.. .+|+++|+.|+.+|.++|+|+|.|++|+ +++|.|+..|.++|+||+||
T Consensus 217 ~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vLiih 296 (396)
T 2gfo_A 217 KSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVH 296 (396)
T ss_dssp EEEEEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECCSEEEEE
T ss_pred EEEEEeCCCCceecccccceeeeecccccccCCHHHHHHHhCCcccccCCcccccCCcccccceEEEEEEecCCcEEEEE
Confidence 99999999999999999999999999864 5899999999999999999999999997 57899999999999999999
Q ss_pred EEEEEEcccccceeccCceEeCCc-cccCCccCCCCCCCCcCCCCCccEEEeEEEEEeecCCCccEEEEEEeCCCCCEEE
Q 003426 390 LKRFEYDFMRDAMVKINDRYEFPL-QLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYK 468 (821)
Q Consensus 390 L~Rf~~d~~~~~~~Ki~~~v~fP~-~Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVIvH~G~~~~GHY~ayir~~~~~~W~~ 468 (821)
|+||.|+. ....|+++.|.||. .||| ++|+..+. .....|+|+|||+|.|++++|||+||+|...+++||+
T Consensus 297 LkRF~~~~--~~~~K~~~~v~fp~~~Ldl----~~~~~~~~--~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~ 368 (396)
T 2gfo_A 297 LKRFSYDG--RWKQKLQTSVDFPLENLDL----SQYVIGPK--NNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFK 368 (396)
T ss_dssp ECCEEECS--SSEEECCCEEECCSSCBCC----GGGBCSCC--SSCCCBEEEEEEEEESCTTTCEEEEEEEETTTTEEEE
T ss_pred ecceeccC--ccceecCceEecchhhccc----cccccCCC--CCCceEEEEEEEEecCCCCCCceEEEEcCCCCCCEEE
Confidence 99999974 34689999999995 6999 67776432 2356899999999999999999999999977799999
Q ss_pred eeCCceeEcchHhHHHhhcCCCCCCCCCCCCCCCCCcccccCccEEEEEEEeec
Q 003426 469 FDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRES 522 (821)
Q Consensus 469 fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~ 522 (821)
|||+.|++++.++|.. .+||||||+|.+
T Consensus 369 fnD~~V~~v~~~~v~~--------------------------~~aYiLfY~r~~ 396 (396)
T 2gfo_A 369 FDDHEVSDISVSSVKS--------------------------SAAYILFYTSLG 396 (396)
T ss_dssp EETTEEEECCHHHHSC--------------------------TTEEEEEEECC-
T ss_pred EeCCCeEECCHHHcCC--------------------------CCceEEEEEEcC
Confidence 9999999999988842 489999999864
No 6
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=2.8e-57 Score=502.05 Aligned_cols=293 Identities=27% Similarity=0.440 Sum_probs=250.9
Q ss_pred cccccccCCCcccchhhHHHHhhccHhHHHHHhcCCCCC---CCCCCCCHHHHHHHHHHHHhcCC--CcccchhHHHhhC
Q 003426 194 TGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTE---NDLPSGSIPLALQSLFYKLQYND--TSVATKELTKSFG 268 (821)
Q Consensus 194 ~g~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~---~~~~~~~~~~~Lq~Lf~~l~~s~--~~v~~~~l~~~~~ 268 (821)
||++||.|+||||||||+||+|+++|+||+++++..... ......++..+|+.||..|+.+. .+++|..|.+.++
T Consensus 1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~l~ 80 (355)
T 3i3t_A 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQ 80 (355)
T ss_dssp --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHHHH
T ss_pred CCCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 699999999999999999999999999999998643211 11223468899999999999854 6899999999886
Q ss_pred --CCCCCccccCcHHHHHHHHHHHHHHHhcCCc--------------------------------------------ccc
Q 003426 269 --WDTYDSFMQHDVQELNRVLCEKLEDKMKGTV--------------------------------------------VEG 302 (821)
Q Consensus 269 --~~~~~~~~Q~Da~Ef~~~Lld~Le~~~~~~~--------------------------------------------~~~ 302 (821)
++.+..+.|||||||++.||+.|+++++... ..+
T Consensus 81 ~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 160 (355)
T 3i3t_A 81 KYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDS 160 (355)
T ss_dssp HHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHCCS
T ss_pred HhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhccCC
Confidence 5678899999999999999999999986432 124
Q ss_pred cccccceeEEeeEEEEeccCceeeeeeeeeeEEEeeCCC------CCHHHHHHHhhhhecccCCCccccccCC-eeeeee
Q 003426 303 TIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGC------RDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKK 375 (821)
Q Consensus 303 ~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l~l~v~~~------~~l~esL~~~~~~E~l~g~n~y~c~~c~-~~~a~k 375 (821)
.|.++|+|++.+.++|..|++.+.+.|+|++|+|+++.. .+|+++|+.|+.+|.++|+|+|.|++|+ ++.|.|
T Consensus 161 ~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~k 240 (355)
T 3i3t_A 161 KIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTK 240 (355)
T ss_dssp HHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHHHHHHCCEEECGGGCCCCSSSCCCCCEEE
T ss_pred cccccccEEEEeeEEeCCCCCCceeeccceeecccCCccccccCccCHHHHHHHhCCccccCCCCCeeCCCCCCccceEE
Confidence 588999999999999999999999999999999999753 4999999999999999999999999997 678999
Q ss_pred eEEEecCCCeeEEEEEEEEEcccccceeccCceEeCC-ccccCCccCCCCCCCCcCCCCCccEEEeEEEEEeecCCCccE
Q 003426 376 GVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFP-LQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHY 454 (821)
Q Consensus 376 ~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP-~~Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVIvH~G~~~~GHY 454 (821)
+..|.++|++|+|||+||.++ .+...|++..|+|| +.||| ++|+... .....|+|+|||+|.|++++|||
T Consensus 241 ~~~i~~lP~vL~i~lkRF~~~--~~~~~K~~~~v~fp~~~l~l----~~~~~~~---~~~~~Y~L~avv~H~G~~~~GHY 311 (355)
T 3i3t_A 241 KLTVQRFPRILVLHLNRFSAS--RGSIKKSSVGVDFPLQRLSL----GDFASDK---AGSPVYQLYALCNHSGSVHYGHY 311 (355)
T ss_dssp EEEEEECCSEEEEEECCEECC--SSCCEECCCCCBCCSSCEEC----GGGBC-------CCEEEEEEEEEEEEETTEEEE
T ss_pred EEEcccCChheEEEhhheecC--CCCceECCcceeCCccccCc----hhhccCC---CCCcceEEEEEEEecCCCCCCeE
Confidence 999999999999999999986 56778999999999 45999 6776543 23568999999999999999999
Q ss_pred EEEEEeCCCCCEEEeeCCceeEcchHhHHHhhcCCCCCCCCCCCCCCCCCcccccCccEEEEEEEeecc
Q 003426 455 YAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRESD 523 (821)
Q Consensus 455 ~ayir~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~~ 523 (821)
+||+|. ++.||+|||+.|++++.++|+. .+||||||+|.+.
T Consensus 312 ~~~~~~--~~~W~~~nD~~V~~v~~~~v~~--------------------------~~aYiLfY~r~~~ 352 (355)
T 3i3t_A 312 TALCRC--QTGWHVYNDSRVSPVSENQVAS--------------------------SEGYVLFYQLMQE 352 (355)
T ss_dssp EEEEEE--TTEEEEEETTEEEEECHHHHHT--------------------------SCCSEEEEEEC--
T ss_pred EEEEEc--CCeEEEEcCCCcEECCHHHcCC--------------------------CCcEEEEEEeccC
Confidence 999998 5779999999999999999964 4899999999764
No 7
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=2e-56 Score=504.51 Aligned_cols=302 Identities=23% Similarity=0.368 Sum_probs=254.8
Q ss_pred CcccccccCCCcccchhhHHHHhhccHhHHHHHhcCCCCC--C--CCCCCCHHHHHHHHHHHHhcCCCcccchhHHHhhC
Q 003426 193 ETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTE--N--DLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFG 268 (821)
Q Consensus 193 ~~g~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~--~--~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~ 268 (821)
..+++||.|+||||||||+||+|+++|+||++++...... . ..+..+++++|++||..|+.+..+++|..|+++++
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~v~P~~~~~~l~ 90 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLH 90 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHCSEECCHHHHHHHH
T ss_pred cCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcCCCcCChHHHHHHHH
Confidence 4567999999999999999999999999999998865421 1 11234789999999999999889999999998764
Q ss_pred C--CCC------CccccCcHHHHHHHHHHHHHHHhcCCc-------------------ccccccccceeEEeeEEEEecc
Q 003426 269 W--DTY------DSFMQHDVQELNRVLCEKLEDKMKGTV-------------------VEGTIQQLFEGHHMNYIECINV 321 (821)
Q Consensus 269 ~--~~~------~~~~Q~Da~Ef~~~Lld~Le~~~~~~~-------------------~~~~i~~lF~g~~~~~i~C~~c 321 (821)
. +.| ..+.|||||||++.||+.|+++++... ..+.|.++|+|++.+.++|..|
T Consensus 91 ~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~F~G~l~s~i~C~~C 170 (404)
T 2ayn_A 91 MAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTES 170 (404)
T ss_dssp HHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEEESSS
T ss_pred HhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcccccchhhhhhhhccccCchhhhhccEEEEEEEEecCC
Confidence 2 223 368999999999999999999987543 3457899999999999999999
Q ss_pred Ccee--eeeeeeeeEEEeeCCC-CCHHHHHHHhhhhecccCCCccccccCC-eeeeeeeEEEecCCCeeEEEEEEEEEcc
Q 003426 322 DYKS--TRKESFYDLQLDVKGC-RDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDF 397 (821)
Q Consensus 322 ~~~s--~~~e~f~~l~l~v~~~-~~l~esL~~~~~~E~l~g~n~y~c~~c~-~~~a~k~~~~~~lP~vL~i~L~Rf~~d~ 397 (821)
++.+ .+.|+|++|+|+|++. .+|+++|+.++. |.++ |.|+.|+ .+.+.|+..|.++|+||+|||+||.|+.
T Consensus 171 ~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~-e~l~----~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~ 245 (404)
T 2ayn_A 171 EEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQ-EEIT----KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKE 245 (404)
T ss_dssp CCCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTE-ECCC----CEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCC
T ss_pred CCccCceeeccCceEEeecCCCcccHHHHHHHhcc-ccee----ecchhhCCccceeeeeeHhhCCCceEEEEEEEEEec
Confidence 9995 6999999999999875 589999999987 4443 7899997 4678999999999999999999999998
Q ss_pred cccceeccCceEeCCccccCCccCCCCCCCC-----------------------------------------------cC
Q 003426 398 MRDAMVKINDRYEFPLQLDLDRENGKYLSPD-----------------------------------------------AD 430 (821)
Q Consensus 398 ~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~-----------------------------------------------~~ 430 (821)
.++...|+++.|.||..|||. +|+..+ ..
T Consensus 246 ~~~~~~Ki~~~v~fP~~Ldl~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 321 (404)
T 2ayn_A 246 KESVNAKVLKDVKFPLMLDMY----ELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIG 321 (404)
T ss_dssp SSSSCCBCCCCCBCCSEEECG----GGBCHHHHHHTTTTTGGGTCTTC----------------------CCCCCSCTTT
T ss_pred ccCceeccCceeccCceeEHh----HhcChhhhhhcchhhhHHhhhhcccchhhhhhccccccccccccccccccccccC
Confidence 878889999999999999994 444321 00
Q ss_pred CCCCccEEEeEEEEEee-cCCCccEEEEEEeCCCCCEEEeeCCceeEcchHhHHHhhcCCCCCCCCCCCCCCCCCccccc
Q 003426 431 RSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTK 509 (821)
Q Consensus 431 ~~~~~~Y~L~gVIvH~G-~~~~GHY~ayir~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~~~~~~~~~ 509 (821)
......|+|+|||+|.| ++++|||+||||.. +++||+|||+.|++++.++|+...+||..
T Consensus 322 ~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~-~~~W~~fnD~~V~~v~~~~v~~~~~g~~~------------------ 382 (404)
T 2ayn_A 322 SNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRK-QDEWIKFDDDKVSIVTPEDILRLSGGGDW------------------ 382 (404)
T ss_dssp TCCCSEEEEEEEEEEESSSTTSSEEEEEEEEE-TTEEEEEBTTBCCCBCHHHHGGGGSSSSS------------------
T ss_pred cCCCceEEEEEEEEecCCCCCCCCeEEEEECC-CCeEEEeecccceecCHHHHHhhhCCCCC------------------
Confidence 12357899999999999 69999999999984 78999999999999999999887766642
Q ss_pred CccEEEEEEEeecc
Q 003426 510 YSNAYMLVYIRESD 523 (821)
Q Consensus 510 ~~~AYmL~Y~R~~~ 523 (821)
.+||||||+|.+.
T Consensus 383 -~~aYiLfY~r~~~ 395 (404)
T 2ayn_A 383 -HIAYVLLYGPRRV 395 (404)
T ss_dssp -CEEEEEEEECC--
T ss_pred -ceEEEEEEEecCC
Confidence 5899999999874
No 8
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=1.2e-55 Score=500.03 Aligned_cols=299 Identities=24% Similarity=0.354 Sum_probs=248.1
Q ss_pred CCCcccccccCCCcccchhhHHHHhhccHhHHHHHhcCCCCCCCCC--------CCCHHHHHHHHHHHHhcCC-Ccccch
Q 003426 191 KKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLP--------SGSIPLALQSLFYKLQYND-TSVATK 261 (821)
Q Consensus 191 k~~~g~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~~~~~--------~~~~~~~Lq~Lf~~l~~s~-~~v~~~ 261 (821)
....+++||.|+||||||||+||+|+++|+||++++.......... ..+++++|++||..|+.+. .+++|.
T Consensus 19 ~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p~ 98 (415)
T 1vjv_A 19 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPV 98 (415)
T ss_dssp CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCH
T ss_pred ccCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCHH
Confidence 3455789999999999999999999999999999988654332211 2368999999999999976 889999
Q ss_pred hHHHhhCC--CCCC-------ccccCcHHHHHHHHHHHHHHHhcCCcccccccccceeEEeeEEEEeccCcee--eeeee
Q 003426 262 ELTKSFGW--DTYD-------SFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKS--TRKES 330 (821)
Q Consensus 262 ~l~~~~~~--~~~~-------~~~Q~Da~Ef~~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s--~~~e~ 330 (821)
.|.+.++. +.|. .+.||||+||++.||+.|+++++. +.|.++|+ ++.+.++|..|++.+ .+.|+
T Consensus 99 ~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~----~~i~~~F~-~~~~~~~C~~C~~~s~s~~~e~ 173 (415)
T 1vjv_A 99 VLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD----KFSEDFRI-QFKTTIKDTANDNDITVKENES 173 (415)
T ss_dssp HHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH----HHHTTTCE-EEEEEEEETTEEEEEEEECCCE
T ss_pred HHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc----chHHHHHH-hheEEEEECCCCCCcccccccc
Confidence 99887641 2333 789999999999999999999865 67999999 999999999999987 58999
Q ss_pred eeeEEEeeCCC-CCHHHHHHHhhhhecccCCCccccccCC-eeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCce
Q 003426 331 FYDLQLDVKGC-RDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDR 408 (821)
Q Consensus 331 f~~l~l~v~~~-~~l~esL~~~~~~E~l~g~n~y~c~~c~-~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~ 408 (821)
|++|+|+|++. .+|+++|+.++..+ ++ |.|+.|+ .+.|.|+..|.++|+||+|||+||.|+..++...|+++.
T Consensus 174 f~~Lsl~i~~~~~~l~~~L~~~~~e~-i~----~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~ 248 (415)
T 1vjv_A 174 DSKLQCHISGTTNFMRNGLLEGLNEK-IE----KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRK 248 (415)
T ss_dssp ESCEEECCCTTCCBHHHHHHHHHEEC--------------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCC
T ss_pred ceeeeeccccccchHHHHHHHHhhhh-hh----hcccccCCcccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCc
Confidence 99999999875 48999999998743 43 7899996 568999999999999999999999999888889999999
Q ss_pred EeCCccccCCccCCCCCCCC------------------------------------------------------------
Q 003426 409 YEFPLQLDLDRENGKYLSPD------------------------------------------------------------ 428 (821)
Q Consensus 409 v~fP~~Ldl~~~~~~~l~~~------------------------------------------------------------ 428 (821)
|+||..||| .+|+..+
T Consensus 249 V~FP~~Ldl----~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 324 (415)
T 1vjv_A 249 VVFPFQLDV----ADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQW 324 (415)
T ss_dssp CBCCSEEEC----GGGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcEeEh----HHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccccccccccchhhhhchhhHHhhhhhh
Confidence 999999999 4554321
Q ss_pred -------------cCCCCCccEEEeEEEEEee-cCCCccEEEEEEe-CCCCCEEEeeCCceeEcchHhHHHhhcCCCCCC
Q 003426 429 -------------ADRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRP-TLSDQWYKFDDERVTKEDVKRALEEQYGGEEEL 493 (821)
Q Consensus 429 -------------~~~~~~~~Y~L~gVIvH~G-~~~~GHY~ayir~-~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~ 493 (821)
........|+|+|||+|.| ++++|||+||||. ..+++||+|||+.|++++.++|+...+||..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~-- 402 (415)
T 1vjv_A 325 LEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGES-- 402 (415)
T ss_dssp HHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTTS--
T ss_pred hhhcccccccccccccCCCceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHhhhcCCCCc--
Confidence 0113457899999999999 7999999999998 5688999999999999999999887777642
Q ss_pred CCCCCCCCCCCcccccCccEEEEEEEeec
Q 003426 494 PPTNPGFNNTPFKFTKYSNAYMLVYIRES 522 (821)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~ 522 (821)
.+||||||+|++
T Consensus 403 -----------------~~aYiLfY~r~~ 414 (415)
T 1vjv_A 403 -----------------DSALILMYKGFG 414 (415)
T ss_dssp -----------------CEEEEEEEEETT
T ss_pred -----------------ceEEEEEEEecC
Confidence 589999999975
No 9
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=2e-53 Score=490.15 Aligned_cols=299 Identities=29% Similarity=0.482 Sum_probs=253.6
Q ss_pred CCCcccccccCCCcccchhhHHHHhhccHhHHHHHhcCCC---CCCCCCCCCHHHHHHHHHHHHhcCC----------Cc
Q 003426 191 KKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPT---TENDLPSGSIPLALQSLFYKLQYND----------TS 257 (821)
Q Consensus 191 k~~~g~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~---~~~~~~~~~~~~~Lq~Lf~~l~~s~----------~~ 257 (821)
...+|++||.|+||||||||+||+|+++|+||++++.... .....+..++.++|+.+|..|+... ..
T Consensus 136 ~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~ 215 (476)
T 3mhs_A 136 ERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTST 215 (476)
T ss_dssp GGTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--------CC
T ss_pred cCCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhcccccccccccccc
Confidence 4678999999999999999999999999999999985321 1223446689999999999998632 13
Q ss_pred ccchhHHHhhC-----CCCCCccccCcHHHHHHHHHHHHHHHhcCC-------------cccccccccceeEEeeEEEEe
Q 003426 258 VATKELTKSFG-----WDTYDSFMQHDVQELNRVLCEKLEDKMKGT-------------VVEGTIQQLFEGHHMNYIECI 319 (821)
Q Consensus 258 v~~~~l~~~~~-----~~~~~~~~Q~Da~Ef~~~Lld~Le~~~~~~-------------~~~~~i~~lF~g~~~~~i~C~ 319 (821)
+.+..+...++ .+.|..++||||+||++.||+.|+++++.. ...+.|.++|+|++.+.++|.
T Consensus 216 ~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G~l~~~~~C~ 295 (476)
T 3mhs_A 216 NRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCP 295 (476)
T ss_dssp CSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCEEEEEEEECT
T ss_pred cCcchHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCcceeecceEEEEEEEEC
Confidence 44555444332 256888999999999999999999887521 124578999999999999999
Q ss_pred ccCceee-eeeeeeeEEEeeCCCCCHHHHHHHhhhhecccCCCccccccCC-eeeeeeeEEEecCCCeeEEEEEEEEEcc
Q 003426 320 NVDYKST-RKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDF 397 (821)
Q Consensus 320 ~c~~~s~-~~e~f~~l~l~v~~~~~l~esL~~~~~~E~l~g~n~y~c~~c~-~~~a~k~~~~~~lP~vL~i~L~Rf~~d~ 397 (821)
.|++.+. +.++|++|+|+|++..+|+++|+.|+.+|.++|.+ |.|++|+ ++.|.|+..|.++|++|+|||+||.|+.
T Consensus 296 ~C~~~s~~~~e~f~~LsL~i~~~~sl~~~L~~~~~~E~l~~~~-~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~ 374 (476)
T 3mhs_A 296 GCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLL 374 (476)
T ss_dssp TTCCCCEEEEEEESCEEECCTTCCBHHHHHHHHHCCEECSSCC-CEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECT
T ss_pred CCCCeeCCcccchhhhccchhhhhHHHHHHHHhcChhhccCCC-CcCCccCCcccEEEEEEcccCCcceEEEeeeccccC
Confidence 9999975 58999999999999999999999999999999755 9999997 5689999999999999999999999975
Q ss_pred cccceeccCceEeCCccccCCccCCCCCCCCcC-------CCCCccEEEeEEEEEeecCCCccEEEEEEeCCCCCEEEee
Q 003426 398 MRDAMVKINDRYEFPLQLDLDRENGKYLSPDAD-------RSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFD 470 (821)
Q Consensus 398 ~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~~-------~~~~~~Y~L~gVIvH~G~~~~GHY~ayir~~~~~~W~~fn 470 (821)
.+...|+++.|.||..||| ++|++.... ......|+|+|||+|.|++++|||+||+|.. +++||+||
T Consensus 375 -~~~~~K~~~~V~fP~~Ldl----~~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~vr~~-~~~W~~fn 448 (476)
T 3mhs_A 375 -NGSNRKLDDFIEFPTYLNM----KNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCKIS-GGQWFKFN 448 (476)
T ss_dssp -TSCEEECCCCCBCCSEEEC----GGGBSCCBCCC--CCCBCCCEEEEEEEEEEEEECSSSEEEEEEEECT-TSCEEEEE
T ss_pred -CCCeEECCEEEcCCCeeec----hhhcCcccccccccccCCCCCcEEEEEEEEeCCCCCCCceEEEEECC-CCcEEEEe
Confidence 3568999999999999999 666654432 2346789999999999999999999999975 78999999
Q ss_pred CCceeEcchHhHHHhhcCCCCCCCCCCCCCCCCCcccccCccEEEEEEEeec
Q 003426 471 DERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRES 522 (821)
Q Consensus 471 D~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~ 522 (821)
|+.|+++++++|+. .+||||||+|++
T Consensus 449 D~~V~~v~~~~v~~--------------------------~~aYiLfY~r~~ 474 (476)
T 3mhs_A 449 DSMVSSISQEEVLK--------------------------EQAYLLFYTIRQ 474 (476)
T ss_dssp TTEEEEECHHHHTT--------------------------SCEEEEEEEEEE
T ss_pred CCceEECCHHHhcc--------------------------CCcEEEEEEEec
Confidence 99999999999964 489999999986
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=9.7e-51 Score=492.10 Aligned_cols=224 Identities=21% Similarity=0.325 Sum_probs=197.7
Q ss_pred CCCcccccccCCCcccchhhHHHHhhccHhHHHHHhcCCC----CCCCCCCCCHHHHHHHHHHHHhcC------------
Q 003426 191 KKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPT----TENDLPSGSIPLALQSLFYKLQYN------------ 254 (821)
Q Consensus 191 k~~~g~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~----~~~~~~~~~~~~~Lq~Lf~~l~~s------------ 254 (821)
...+|++||.|+||||||||+||+|+++|+||++++.... .....+..++.++|++||..|+..
T Consensus 339 ~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~ 418 (854)
T 3ihp_A 339 LFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDG 418 (854)
T ss_dssp CCSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC-----------
T ss_pred ccCCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhcccccccccccccc
Confidence 3467999999999999999999999999999999974211 122345568999999999999853
Q ss_pred ---------CCcccchhHHHhhCC--CCCCccccCcHHHHHHHHHHHHHHHhcCCcccccccccceeEEeeEEEEeccCc
Q 003426 255 ---------DTSVATKELTKSFGW--DTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDY 323 (821)
Q Consensus 255 ---------~~~v~~~~l~~~~~~--~~~~~~~Q~Da~Ef~~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~ 323 (821)
...++|..|...+++ ..|..++||||+||++.||+.|++++++ ...|.++|+|++.+.++|..|++
T Consensus 419 ~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~~---~s~i~~lF~G~l~s~i~C~~C~~ 495 (854)
T 3ihp_A 419 ERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCRS---SENPNEVFRFLVEEKIKCLATEK 495 (854)
T ss_dssp ----------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCTT---SCCGGGGTCEEEEEEEEETTTTE
T ss_pred ccccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHhcc---cCCchhhcCceEEEEEEecCCCC
Confidence 347899999999975 5688899999999999999999999865 45789999999999999999999
Q ss_pred eeeeeeeeeeEEEeeCCC--------------------------------CCHHHHHHHhhhhecccCCCccccccCC-e
Q 003426 324 KSTRKESFYDLQLDVKGC--------------------------------RDVYASFDKYVEVERLEGDNKYHAEEHG-L 370 (821)
Q Consensus 324 ~s~~~e~f~~l~l~v~~~--------------------------------~~l~esL~~~~~~E~l~g~n~y~c~~c~-~ 370 (821)
.+.+.++|++|+|+|+.. .+|+++|+.|+.+|.++| |.|+.|+ +
T Consensus 496 vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dcL~~f~~~E~Le~---y~C~~C~~k 572 (854)
T 3ihp_A 496 VKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAPEQVDD---FWSTALQAK 572 (854)
T ss_dssp EEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHHHHHHHHSCEEEEE---EEETTTTEE
T ss_pred EeEEeeeceEEEeeCCccccccccchhhhcccccccccccccccccccCCCCHHHHHHHhcCceEeee---eeccccCCc
Confidence 999999999999999853 389999999999999997 9999997 5
Q ss_pred eeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCccccCCccC
Q 003426 371 QDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDREN 421 (821)
Q Consensus 371 ~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~ 421 (821)
+.|.|+..|.+||+||+|||+||.|+.. +...|+++.|+||..|||.+|.
T Consensus 573 ~~a~K~~~i~~lP~vLiihLkRF~~d~~-~~~~Ki~~~V~FP~~LDl~~y~ 622 (854)
T 3ihp_A 573 SVAVKTTRFASFPDYLVIQIKKFTFGLD-WVPKKLDVSIEMPEELDISQLR 622 (854)
T ss_dssp EEEEEEEEESSCCSEEEEEECCEEECGG-GCEEECCEECCCCSEEECGGGB
T ss_pred ceeeEEEEeeeCCceEEEEeehheecCC-CceEECCeEEecCCcEehHHhc
Confidence 7899999999999999999999999865 6789999999999999997664
No 11
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.5e-45 Score=420.12 Aligned_cols=238 Identities=27% Similarity=0.476 Sum_probs=204.1
Q ss_pred HHhhccceeeEEecChhhHhhhcccccccccCCCc--ceEEEeeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCCC
Q 003426 558 KAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDK--VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTY 635 (821)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~~~~~~n~~~ 635 (821)
++|+|+|++++|+|+++|..|+| |||+|++. ++++||+|++|+.+|++.||+++|++++++|||.|.+|+|+|.
T Consensus 4 ~~EahlY~~vkv~tde~f~~~~G----fDL~d~~~~~~~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~ 79 (530)
T 2ylm_A 4 GSEAHLYMQVQIVAEDQFCGHQG----NDMYDEEKVKYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTK 79 (530)
T ss_dssp CTTGGGEEEEEEEEGGGGTTCCS----SSSCCTTTCCCEEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCE
T ss_pred hhhhhceeEEEEeeHHHHhhccC----CCCcCCccCCcceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCcc
Confidence 46899999999999999999999 99998764 4589999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcchhchHHHHHhhhccccccceeEEEEeecCC-CCC--CCCCCCCCCCcEEEEEEeecCCCCeEEEeEEEEE
Q 003426 636 RPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEFGP-DLH--PIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFL 712 (821)
Q Consensus 636 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~~--~~~~~~~~~~~~l~flK~fd~~~~~l~~~g~~~~ 712 (821)
||+....+.+.+.++.++.. ...+++||||+..+. ... + .+|....+++|||||||||.+|+|+|+||++|
T Consensus 80 Rp~~~~~~~~~~~~~~~~~~-----~~~~~~lflE~~~~~~~~~~~~-l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v 153 (530)
T 2ylm_A 80 RPAMLDNEADGNKTMIELSD-----NENPWTIFLETVDPELAASGAT-LPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYT 153 (530)
T ss_dssp EECCCCHHHHTTSBHHHHHT-----SCSSEEEEEEECCHHHHTTTCC-CCCCCTTTEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred CCccCCccccHHHHHHHHhc-----cCCceEEEEEecccccCCcccc-CCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEE
Confidence 99942212223334554432 134699999996431 111 2 24456678899999999999999999999999
Q ss_pred ecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccC-ccCccccc--ccCCCCEEEEEeCCCCCCccCCCCCC
Q 003426 713 KSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLD-KRTSFRLS--QIEDGDIICFQKSPPLESEQECRYPD 789 (821)
Q Consensus 713 ~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~-~~~t~~~~--el~~GDIi~fQ~~~~~~~~~~~~~~~ 789 (821)
+++++|++|+|.|+++||||++|+|.||||| +|++| |+|+ ++.||.++ ||++|||||||+..++ ..+..|||
T Consensus 154 ~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi--~~~~i-e~l~~~~~t~~~~~~eL~~GdII~fQ~~~~~--~~~~~y~~ 228 (530)
T 2ylm_A 154 PISCKIRDLLPVMCDRAGFIQDTSLILYEEV--KPNLT-ERIQDYDVSLDKALDELMDGDIIVFQKDDPE--NDNSELPT 228 (530)
T ss_dssp ETTCBGGGTHHHHHHHHTCCTTCCEEEEEEE--ETTEE-EECCCSSSBHHHHSTTCCTTEEEEEEECCGG--GGGSSSCS
T ss_pred CCCCCHHHHHHHHHHHcCCCCCCceEEEEec--CCCce-eEcccccccHHHHHhcccCCCEEEEEecCCc--cccccCCC
Confidence 9999999999999999999999999999999 68988 9999 89999999 9999999999998653 24567999
Q ss_pred HHHHHHHhhcceEEEEEeCcc
Q 003426 790 VPSFLEYVHNRQVQNMWKFSI 810 (821)
Q Consensus 790 v~~y~~~l~~r~~~~~~~~~~ 810 (821)
|.+||+||+||+.|+|++...
T Consensus 229 v~~yy~~l~nrv~V~f~~~~~ 249 (530)
T 2ylm_A 229 AKEYFRDLYHRVDVIFCDKTI 249 (530)
T ss_dssp HHHHHHHHHHEEEEEEEETTS
T ss_pred HHHHHHHHhcceEEEEeecCC
Confidence 999999999999999999543
No 12
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.93 E-value=5.7e-26 Score=221.05 Aligned_cols=134 Identities=27% Similarity=0.500 Sum_probs=117.6
Q ss_pred CCCCcEEEEEEcCccccCCCeeecCcEEEcceEEEEEEEECCCC----CCcEEEEEEecCCCCCCCCceEEEEEEEEEEe
Q 003426 49 DPPTMKFTWTIENFSRLNTKKHYSDVFVVGGYKWRILIFPKGNN----VDHLSMYLDVADSGTLPYGWSRYAQFSLAVVN 124 (821)
Q Consensus 49 ~~~~~~~tw~I~n~S~l~~~~~~Sp~f~vgg~~W~I~~yP~G~~----~~~lSvyL~~~~~~~~~~~W~v~a~f~l~L~n 124 (821)
....++|+|+|+|||.++ +.++||+|.+||++|+|++||+|++ .++|||||+|... ..+.+|+++|+|+|+|+|
T Consensus 15 ~~~~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~l~~ 92 (155)
T 2foj_A 15 WRSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIIN 92 (155)
T ss_dssp TCSEEEEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEEEEEEEECC
T ss_pred cCCCcEEEEEECChhhcC-CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEEEEc
Confidence 345789999999999997 8999999999999999999999953 4799999999654 346689999999999999
Q ss_pred cCCCceeeeeccceeecCCCCCceeccccCCCcccCCCCCccccccceeeeeeeeeeccc
Q 003426 125 QIHSKYSIRKDTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKVLD 184 (821)
Q Consensus 125 ~~~~~~~~~~~~~~~F~~~~~dwG~~~Fi~~~~L~~~~~gfl~dD~l~I~~~V~v~~~~~ 184 (821)
|.++..+..+...|.|.....+|||.+||+|++|+++++|||+||+|+|+|+|+|.++.+
T Consensus 93 ~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG 152 (155)
T 2foj_A 93 YRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHG 152 (155)
T ss_dssp SSCGGGCEEEEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBS
T ss_pred CCCCcceEEeccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCccc
Confidence 998875666677889988788999999999999998889999999999999999977655
No 13
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.93 E-value=1.6e-26 Score=247.23 Aligned_cols=220 Identities=19% Similarity=0.248 Sum_probs=140.4
Q ss_pred cccccCCCcccchhhHHHHhhccHhHHHHHhcCCCCCCCCCC-CCHHHHH-HHHHHHHhcCCCcccchhHHH-------h
Q 003426 196 YVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPS-GSIPLAL-QSLFYKLQYNDTSVATKELTK-------S 266 (821)
Q Consensus 196 ~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~~~~~~-~~~~~~L-q~Lf~~l~~s~~~v~~~~l~~-------~ 266 (821)
.+||.|+||||||||.||+|+.+|++++.|...+....+.+. ..+..+| +.||..|.. ..+.|..++. .
T Consensus 9 p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~~~~~~~l~~~L~r~i~~~Lrk--~~~~P~~~l~~LR~~~pQ 86 (374)
T 2vhf_A 9 KKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRI--YGYVCATKIMKLRKILEK 86 (374)
T ss_dssp SCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTSCTTHHHHHHHHHHTTHHHHHH--TSEECHHHHHHHHHHHHH
T ss_pred CccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhHH
Confidence 489999999999999999999999999999887653333111 2477788 899999987 5666655443 3
Q ss_pred hCCCCCCccccCcHHHHHHHHHHHHHHH-hc--CC---c--ccccccccceeEEeeEEEEeccCceeeeeeeeeeEEEee
Q 003426 267 FGWDTYDSFMQHDVQELNRVLCEKLEDK-MK--GT---V--VEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDV 338 (821)
Q Consensus 267 ~~~~~~~~~~Q~Da~Ef~~~Lld~Le~~-~~--~~---~--~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l~l~v 338 (821)
|++.....++||||.||+..|+..|... +. .. . ..+.+.++|. ++. +.
T Consensus 87 fae~~G~~~~QQDaEE~~t~Ll~~L~~~ep~lkl~s~~~~~~~~~~~q~f~--------------E~~--e~-------- 142 (374)
T 2vhf_A 87 VEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRSAGQKVQDCYFYQIFM--------------EKN--EK-------- 142 (374)
T ss_dssp HC--------CCCHHHHHHHHHTTTTCCCCSEEEEETTCCCEEESCEECCC--------------CCC------------
T ss_pred HhcccCCCccccCHHHHHHHHHHHHhhcccccccccccccccccHHHHHhc--------------Ccc--cc--------
Confidence 4665444689999999999999988643 21 00 0 0012223332 000 00
Q ss_pred CCCCCHHHHHHHhhhhecccCCCccccccCCeeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCccccCC
Q 003426 339 KGCRDVYASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLD 418 (821)
Q Consensus 339 ~~~~~l~esL~~~~~~E~l~g~n~y~c~~c~~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~Ldl~ 418 (821)
....+....+ +...+ ..++.|.++|++|+||+.|| +...||-.+|.||.+||+.
T Consensus 143 ~~~e~~~qL~----e~nfl----------------~~gikisrLP~yLtVq~vRF------gKkaKIlrkV~fp~eLDvt 196 (374)
T 2vhf_A 143 VGVPTIQQLL----EWSFI----------------NSNLKFAEAPSCLIIQMPRF------GKDFKLFKKIFPSLELNIT 196 (374)
T ss_dssp CCCCBHHHHH----HHHHH----------------HHTEEESSCCSEEEEECCCC------SSSSSCCCCCBCCSEECCG
T ss_pred cCCcHHHHhh----hHHHH----------------HcCCeeecCCcceEEeeecc------CccccccCCCCCcchhccH
Confidence 0011222222 11111 12344999999999999999 5668999999999999994
Q ss_pred ccCCC-------------------C----CCC-C--------------------------------------cCCCCCcc
Q 003426 419 RENGK-------------------Y----LSP-D--------------------------------------ADRSVRNL 436 (821)
Q Consensus 419 ~~~~~-------------------~----l~~-~--------------------------------------~~~~~~~~ 436 (821)
.+..+ + ... + ........
T Consensus 197 dl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~psg~ 276 (374)
T 2vhf_A 197 DLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLNHKYNPVSLPKDLPDWDWRHGCIPCQN 276 (374)
T ss_dssp GGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECHHHHHHHTTSGGGTTCCCEECCC----------------CC
T ss_pred hhcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhhhhcccccccccCccccccccccCCCCcee
Confidence 32100 0 000 0 00112368
Q ss_pred EEEeEEEEEeecCCCccEEEEEEeC-CCCCEEEeeC
Q 003426 437 YTLHSVLVHSGGVHGGHYYAFIRPT-LSDQWYKFDD 471 (821)
Q Consensus 437 Y~L~gVIvH~G~~~~GHY~ayir~~-~~~~W~~fnD 471 (821)
|+|.|||+ +++|||+||||.. .+++|++||-
T Consensus 277 yeL~aVlt----adsgHYvafVK~~~~d~~W~~FDs 308 (374)
T 2vhf_A 277 MELFAVLC----IETSHYVAFVKYGKDDSAWLFFDS 308 (374)
T ss_dssp EEEEEEEE----EETTEEEEEEECSSSTTCEEEEET
T ss_pred EEEEEEEE----ccCCceEEEEEecCCCCCeEEEec
Confidence 99999999 8999999999973 3789999996
No 14
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.91 E-value=2.4e-24 Score=207.19 Aligned_cols=129 Identities=28% Similarity=0.457 Sum_probs=111.9
Q ss_pred cCCCCcEEEEEEcCccccC---CCeeecCcEEEcce---EEEEEEEECCCC---CCcEEEEEEecCCCCCCCCceEEEEE
Q 003426 48 EDPPTMKFTWTIENFSRLN---TKKHYSDVFVVGGY---KWRILIFPKGNN---VDHLSMYLDVADSGTLPYGWSRYAQF 118 (821)
Q Consensus 48 ~~~~~~~~tw~I~n~S~l~---~~~~~Sp~f~vgg~---~W~I~~yP~G~~---~~~lSvyL~~~~~~~~~~~W~v~a~f 118 (821)
.....++|+|+|+|||.++ ++.++||+|.+||| +|+|++||+|++ .+|||+||+|.+. .+|++.|+|
T Consensus 6 ~~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~----~~w~v~a~f 81 (145)
T 3ivv_A 6 GKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKF 81 (145)
T ss_dssp CCCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC----SSSEEEEEE
T ss_pred CcEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC----CCCcEEEEE
Confidence 3456799999999999986 36899999999996 999999999975 4799999999864 369999999
Q ss_pred EEEEEecCCCceee-eeccceeecCCCCCceeccccCCCcccCCCCCccccccceeeeeeeeee
Q 003426 119 SLAVVNQIHSKYSI-RKDTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRK 181 (821)
Q Consensus 119 ~l~L~n~~~~~~~~-~~~~~~~F~~~~~dwG~~~Fi~~~~L~~~~~gfl~dD~l~I~~~V~v~~ 181 (821)
+|+|+||.++.... .....|+|. ...+|||.+||++++|.++++|||+||+++|+|+|+|++
T Consensus 82 ~l~llnq~~~~~~~~~~~~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~ 144 (145)
T 3ivv_A 82 KFSILNAKGEETKAMESQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 144 (145)
T ss_dssp EEEEECTTSCEEEEEECSSCEEEE-TTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC
T ss_pred EEEEEecCCCceeeecccceEEec-CCCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEe
Confidence 99999998876543 334678896 468899999999999987779999999999999999976
No 15
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=99.90 E-value=1.9e-24 Score=200.95 Aligned_cols=128 Identities=24% Similarity=0.421 Sum_probs=108.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccceeeEEecChhhHhhhcccccccccCCCc--ceEEEeeccccHHHHHHHHH
Q 003426 535 DIAEHLRIRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDK--VRSFRVQKQTSFMAFKEEIA 612 (821)
Q Consensus 535 ~ip~~l~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~v~k~~~~~~~~~~v~ 612 (821)
+||+||.+++++|+++.++++||++|+|+|++|+|+++++|..|+| |||+|++. .++|||+|++++.+|++.||
T Consensus 1 ~iP~hL~~rl~eE~~~~e~rrKEr~EahlY~~vkv~t~~~f~~~~g----fDL~~~~~~~~~~~rv~k~~~~~~~~~~va 76 (130)
T 2kvr_A 1 GSPQQLVERLQEEKRIEAQKRKERQEAHLYMQVQIVAEDQFCGHQG----NDMYDEEKVKYTVFKVLKNSSLAEFVQSLS 76 (130)
T ss_dssp --CTHHHHHHHHHHTTHHHHTCCCCSSTTCCEEEEECCSTTTTCCC----CSSCCSSSCSCEEEECCTTSBHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHhceeEEEEecHHHHHhccC----ccCcCCccCCcceEEEeccCcHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999 99998874 56899999999999999999
Q ss_pred HHhCCCCCceEEEEEeecCCCCCCCCCCCCCcchhchHHHHHhhhccccccceeEEEEe
Q 003426 613 KEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEV 671 (821)
Q Consensus 613 ~~~~~~~~~~r~w~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 671 (821)
+.+|+|++++|||.|++|+|+|.||+... .+.+++.+...... ...+++||||+
T Consensus 77 ~~lg~~~~~~RlW~~~~RqN~T~Rp~~~d----~~~t~~~~~~~~~~-~~~~~~l~lE~ 130 (130)
T 2kvr_A 77 QTMGFPQDQIRLWPMQARSNGTKRPAMLD----NEADGNKTMIELSD-NENPWTIFLET 130 (130)
T ss_dssp HHHCCCGGGCEEEECCCCBTTBCCCCCCC----TTGGGTSBTHHHHT-SCSSEEEEEEC
T ss_pred HHhCCCcccEEEEEeecCCCCCCCCCCCC----ccccHHHHHHHhhc-CCCCcEEEEeC
Confidence 99999999999999999999999998322 22334433322111 23579999995
No 16
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.88 E-value=8.2e-24 Score=210.40 Aligned_cols=134 Identities=18% Similarity=0.334 Sum_probs=111.8
Q ss_pred cCCCCcEEEEEEcCccccCC-------CeeecCcEEEc--ceEEEEEEEECCCC---CCcEEEEEEecCCCC-CCCCceE
Q 003426 48 EDPPTMKFTWTIENFSRLNT-------KKHYSDVFVVG--GYKWRILIFPKGNN---VDHLSMYLDVADSGT-LPYGWSR 114 (821)
Q Consensus 48 ~~~~~~~~tw~I~n~S~l~~-------~~~~Sp~f~vg--g~~W~I~~yP~G~~---~~~lSvyL~~~~~~~-~~~~W~v 114 (821)
..+..|+|+|+|+|||.+++ ..++||+|.+| ||+|+|.+||+|++ .+||||||+|.+... ...+|++
T Consensus 19 ~~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v 98 (178)
T 4gjh_A 19 GACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPF 98 (178)
T ss_dssp HCCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSC
T ss_pred CcccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEEecCCCCcccCCce
Confidence 35678999999999998763 27999999999 99999999999974 379999999976543 2357999
Q ss_pred EEEEEEEEEecCCCceeeeec-----cceeec----CCCCCceeccccCCCcccCCCCCccccccceeeeeeeeee
Q 003426 115 YAQFSLAVVNQIHSKYSIRKD-----TQHQFN----ARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRK 181 (821)
Q Consensus 115 ~a~f~l~L~n~~~~~~~~~~~-----~~~~F~----~~~~dwG~~~Fi~~~~L~~~~~gfl~dD~l~I~~~V~v~~ 181 (821)
.|+|+|+|+||.++..++... ..+.|. ..+.+|||.+||++++|+++++|||+||+++|+|+|.|.+
T Consensus 99 ~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~ 174 (178)
T 4gjh_A 99 RQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTD 174 (178)
T ss_dssp CCEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTT
T ss_pred EEEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecC
Confidence 999999999998765444332 346776 3467899999999999998889999999999999998754
No 17
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.86 E-value=5.4e-23 Score=207.30 Aligned_cols=134 Identities=19% Similarity=0.327 Sum_probs=110.1
Q ss_pred CCCCcEEEEEEcCccccCC-------CeeecCcEEEc--ceEEEEEEEECCCC---CCcEEEEEEecCCCCC-CCCceEE
Q 003426 49 DPPTMKFTWTIENFSRLNT-------KKHYSDVFVVG--GYKWRILIFPKGNN---VDHLSMYLDVADSGTL-PYGWSRY 115 (821)
Q Consensus 49 ~~~~~~~tw~I~n~S~l~~-------~~~~Sp~f~vg--g~~W~I~~yP~G~~---~~~lSvyL~~~~~~~~-~~~W~v~ 115 (821)
.+..|+|+|+|+|||.+++ +.++||+|.+| ||+|+|.+||+|++ .+||||||.+.+++.+ ...|.+.
T Consensus 36 ~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~ 115 (198)
T 4ghu_A 36 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFK 115 (198)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred cccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCCccCCCCCceEE
Confidence 4567999999999998763 57999999999 99999999999975 4799999999876543 3489999
Q ss_pred EEEEEEEEecCCCceeeeec---------cceeecCCCCCceeccccCCCcccCCCCCccccccceeeeeeeeeeccc
Q 003426 116 AQFSLAVVNQIHSKYSIRKD---------TQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKVLD 184 (821)
Q Consensus 116 a~f~l~L~n~~~~~~~~~~~---------~~~~F~~~~~dwG~~~Fi~~~~L~~~~~gfl~dD~l~I~~~V~v~~~~~ 184 (821)
|+|+|+|+||.++..++... ..+.|...+.+|||.+||++++|++ +|||+||+++|+|.|.|+..++
T Consensus 116 a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~~~ 191 (198)
T 4ghu_A 116 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLPD 191 (198)
T ss_dssp CCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTBEEEEEEECCTTCC-
T ss_pred EEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhhh--cCCeeCCEEEEEEEEEeccCCC
Confidence 99999999998764433321 1233555677999999999999975 8999999999999999987654
No 18
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.85 E-value=1.4e-22 Score=204.07 Aligned_cols=130 Identities=22% Similarity=0.392 Sum_probs=106.6
Q ss_pred CCCcEEEEEEcCccccCCC-------eeecCcEEE--cceEEEEEEEECCCC---CCcEEEEEEecCCCCCC-CCceEEE
Q 003426 50 PPTMKFTWTIENFSRLNTK-------KHYSDVFVV--GGYKWRILIFPKGNN---VDHLSMYLDVADSGTLP-YGWSRYA 116 (821)
Q Consensus 50 ~~~~~~tw~I~n~S~l~~~-------~~~Sp~f~v--gg~~W~I~~yP~G~~---~~~lSvyL~~~~~~~~~-~~W~v~a 116 (821)
...++|+|+|+|||.++++ .++||+|.+ |||+|+|.+||+|++ .+|||+||++.+....+ .+|++.|
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~W~~~a 119 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 119 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCCCceEE
Confidence 5679999999999998632 499999999 999999999999975 47999999998775544 6899999
Q ss_pred EEEEEEEecCCCceeeeec-----cceeec----CCCCCceeccccCCCcccCCCCCccccccceeeeeeeeee
Q 003426 117 QFSLAVVNQIHSKYSIRKD-----TQHQFN----ARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRK 181 (821)
Q Consensus 117 ~f~l~L~n~~~~~~~~~~~-----~~~~F~----~~~~dwG~~~Fi~~~~L~~~~~gfl~dD~l~I~~~V~v~~ 181 (821)
+|+|+|+||.++... ... ..+.|. ..+.+|||.+||++++|++ ++|||+||+++|+|+|.|.+
T Consensus 120 ~~~l~lldq~~~~~~-~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~ 191 (192)
T 1ca9_A 120 KVTLMLLDQNNREHV-IDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG 191 (192)
T ss_dssp CEEEEECCTTSSCCE-EEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCCcee-eEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence 999999999887432 111 122353 2456899999999999985 48999999999999998853
No 19
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.85 E-value=3.4e-22 Score=197.01 Aligned_cols=130 Identities=21% Similarity=0.377 Sum_probs=105.3
Q ss_pred CCCcEEEEEEcCccccCC-----C--eeecCcEE--EcceEEEEEEEECCCC---CCcEEEEEEecCCCCCC-CCceEEE
Q 003426 50 PPTMKFTWTIENFSRLNT-----K--KHYSDVFV--VGGYKWRILIFPKGNN---VDHLSMYLDVADSGTLP-YGWSRYA 116 (821)
Q Consensus 50 ~~~~~~tw~I~n~S~l~~-----~--~~~Sp~f~--vgg~~W~I~~yP~G~~---~~~lSvyL~~~~~~~~~-~~W~v~a 116 (821)
...++|+|+|+|||.+++ + .++||+|. +|||+|+|.+||+|++ .+|||+||++.+....+ .+|++.|
T Consensus 16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~w~~~~ 95 (168)
T 1d00_A 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 95 (168)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecCCCCccCCCceEE
Confidence 467999999999999863 2 39999996 8999999999999974 47999999998765544 5899999
Q ss_pred EEEEEEEecCCCceeeeecc-----ceeec----CCCCCceeccccCCCcccCCCCCccccccceeeeeeeeee
Q 003426 117 QFSLAVVNQIHSKYSIRKDT-----QHQFN----ARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRK 181 (821)
Q Consensus 117 ~f~l~L~n~~~~~~~~~~~~-----~~~F~----~~~~dwG~~~Fi~~~~L~~~~~gfl~dD~l~I~~~V~v~~ 181 (821)
+|+|+|+||.++... .... .+.|. ..+.+|||.+||++++|+++ +|||+||+++|+|+|.|.+
T Consensus 96 ~~~l~ll~q~~~~~~-~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~~ 167 (168)
T 1d00_A 96 KVTLMLLDQNNREHV-IDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLTG 167 (168)
T ss_dssp CEEEEECCTTSSCCE-EEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCCccc-eeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEecC
Confidence 999999999876522 2211 23464 24578999999999999863 3999999999999998743
No 20
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.84 E-value=1.2e-21 Score=191.40 Aligned_cols=130 Identities=21% Similarity=0.351 Sum_probs=101.5
Q ss_pred CCCcEEEEEEcCccccCC-----C--eeecCcEEEc--ceEEEEEEEECCCC----CCcEEEEEEecCCCCC-CCCceEE
Q 003426 50 PPTMKFTWTIENFSRLNT-----K--KHYSDVFVVG--GYKWRILIFPKGNN----VDHLSMYLDVADSGTL-PYGWSRY 115 (821)
Q Consensus 50 ~~~~~~tw~I~n~S~l~~-----~--~~~Sp~f~vg--g~~W~I~~yP~G~~----~~~lSvyL~~~~~~~~-~~~W~v~ 115 (821)
+..|+|+|+|+|||.+++ + .++||+|.+| ||+|+|.+||+|++ .+|||+||.+.+.+.. ..+|++.
T Consensus 2 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~ 81 (160)
T 1lb6_A 2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ 81 (160)
T ss_dssp CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCcee
Confidence 356899999999998853 2 7999999999 99999999999963 4699999999866543 3479999
Q ss_pred EEEEEEEEecCCCce--eeeec-----cceeecC-----CCCCceeccccCCCcccCCCCCccccccceeeeeeeeee
Q 003426 116 AQFSLAVVNQIHSKY--SIRKD-----TQHQFNA-----RESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRK 181 (821)
Q Consensus 116 a~f~l~L~n~~~~~~--~~~~~-----~~~~F~~-----~~~dwG~~~Fi~~~~L~~~~~gfl~dD~l~I~~~V~v~~ 181 (821)
|+|+|+|+||.++.. ++... ..+.|.. ...+|||.+||++++|+. +|||+||+++|+|.|.|+.
T Consensus 82 a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~~--~~yl~dD~l~I~~~V~v~~ 157 (160)
T 1lb6_A 82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEVSTRF 157 (160)
T ss_dssp SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGT--SCCCBTTBEEEEEEEEC--
T ss_pred eeEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhhh--CCCccCCEEEEEEEEEEee
Confidence 999999999987531 11111 0122421 123799999999999974 8999999999999999875
No 21
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.82 E-value=1.2e-21 Score=197.13 Aligned_cols=130 Identities=20% Similarity=0.367 Sum_probs=106.4
Q ss_pred CCCcEEEEEEcCccccCC-----C--eeecCcEEEc--ceEEEEEEEECCCC---CCcEEEEEEecCCCCC-CCCceEEE
Q 003426 50 PPTMKFTWTIENFSRLNT-----K--KHYSDVFVVG--GYKWRILIFPKGNN---VDHLSMYLDVADSGTL-PYGWSRYA 116 (821)
Q Consensus 50 ~~~~~~tw~I~n~S~l~~-----~--~~~Sp~f~vg--g~~W~I~~yP~G~~---~~~lSvyL~~~~~~~~-~~~W~v~a 116 (821)
...++|+|+|+|||.++. + .++||+|.+| ||+|+|.+||+|++ .+|||+||++.+++.+ ..+|++.|
T Consensus 37 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a 116 (192)
T 2gkw_A 37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 116 (192)
T ss_dssp CCSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecCCCCccCCCcEEE
Confidence 367899999999999862 2 5999999999 99999999999974 4799999999866543 34799999
Q ss_pred EEEEEEEecCCCceeeeec-----cceeecC----CCCCceeccccCCCcccCCCCCccccccceeeeeeeeee
Q 003426 117 QFSLAVVNQIHSKYSIRKD-----TQHQFNA----RESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRK 181 (821)
Q Consensus 117 ~f~l~L~n~~~~~~~~~~~-----~~~~F~~----~~~dwG~~~Fi~~~~L~~~~~gfl~dD~l~I~~~V~v~~ 181 (821)
+|+|+|+||.++..++... ..+.|.. .+.+|||.+||++++|++ +|||+||+++|+|.|.|.+
T Consensus 117 ~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v~~ 188 (192)
T 2gkw_A 117 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSD 188 (192)
T ss_dssp CEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCc--CCCeeCCEEEEEEEEEcCC
Confidence 9999999998875443322 1255743 246899999999999976 6999999999999998754
No 22
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.82 E-value=1.6e-20 Score=203.92 Aligned_cols=126 Identities=29% Similarity=0.484 Sum_probs=106.7
Q ss_pred CCcEEEEEEcCccccC---CCeeecCcEEEcce---EEEEEEEECCCC---CCcEEEEEEecCCCCCCCCceEEEEEEEE
Q 003426 51 PTMKFTWTIENFSRLN---TKKHYSDVFVVGGY---KWRILIFPKGNN---VDHLSMYLDVADSGTLPYGWSRYAQFSLA 121 (821)
Q Consensus 51 ~~~~~tw~I~n~S~l~---~~~~~Sp~f~vgg~---~W~I~~yP~G~~---~~~lSvyL~~~~~~~~~~~W~v~a~f~l~ 121 (821)
..++|+|+|.|||.++ ++.++||+|.+||+ +|+|.+||+|++ .+|+|+||.|.+. .+|.+.|+|+|+
T Consensus 5 ~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~----~~~~v~a~~~~~ 80 (312)
T 3hqi_A 5 VKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFS 80 (312)
T ss_dssp EEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEEC----CC-CEEEEEEEE
T ss_pred EEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCC----CCCcEEEEEEEE
Confidence 4689999999999996 57899999999996 999999999963 4799999999853 368999999999
Q ss_pred EEecCCCceeeee-ccceeecCCCCCceeccccCCCcccCCCCCccccccceeeeeeeeee
Q 003426 122 VVNQIHSKYSIRK-DTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRK 181 (821)
Q Consensus 122 L~n~~~~~~~~~~-~~~~~F~~~~~dwG~~~Fi~~~~L~~~~~gfl~dD~l~I~~~V~v~~ 181 (821)
|+|++++...... ...++|.. +.+|||.+||+|++|+++.+|||+||+++|+|+|+|.+
T Consensus 81 l~~~~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~ 140 (312)
T 3hqi_A 81 ILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQ 140 (312)
T ss_dssp EECTTSCEEEEEECSSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEE
T ss_pred EEeCCCCcccccccCCceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEe
Confidence 9999887654433 56788875 46899999999999988788999999999999999986
No 23
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.81 E-value=4.7e-21 Score=197.77 Aligned_cols=130 Identities=19% Similarity=0.354 Sum_probs=107.0
Q ss_pred CCCcEEEEEEcCccccCC-------CeeecCcEEEc--ceEEEEEEEECCCC---CCcEEEEEEecCCCCC-CCCceEEE
Q 003426 50 PPTMKFTWTIENFSRLNT-------KKHYSDVFVVG--GYKWRILIFPKGNN---VDHLSMYLDVADSGTL-PYGWSRYA 116 (821)
Q Consensus 50 ~~~~~~tw~I~n~S~l~~-------~~~~Sp~f~vg--g~~W~I~~yP~G~~---~~~lSvyL~~~~~~~~-~~~W~v~a 116 (821)
+..++|+|+|.|||.+++ ..++||+|.+| ||.|+|.+||+|++ .+|+|+||.+.++..+ ...|++.|
T Consensus 73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~a 152 (228)
T 1flk_A 73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 152 (228)
T ss_dssp CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCCC
T ss_pred CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCcEEE
Confidence 467999999999998853 27999999999 99999999999974 4799999999866543 34799999
Q ss_pred EEEEEEEecCCCceeeeec-----cceeec----CCCCCceeccccCCCcccCCCCCccccccceeeeeeeeee
Q 003426 117 QFSLAVVNQIHSKYSIRKD-----TQHQFN----ARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRK 181 (821)
Q Consensus 117 ~f~l~L~n~~~~~~~~~~~-----~~~~F~----~~~~dwG~~~Fi~~~~L~~~~~gfl~dD~l~I~~~V~v~~ 181 (821)
+|+|+|+||.++..++... ..+.|. ..+.+|||.+||++++|++ +|||+||+++|+|.|.|.+
T Consensus 153 ~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~ 224 (228)
T 1flk_A 153 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSD 224 (228)
T ss_dssp CEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSS--STTCCSSEEEEEEECCCTT
T ss_pred EEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHcc--CCCccCCEEEEEEEEEccc
Confidence 9999999998776443321 223464 3356899999999999976 8999999999999998855
No 24
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=98.88 E-value=1.6e-09 Score=124.84 Aligned_cols=134 Identities=19% Similarity=0.391 Sum_probs=103.1
Q ss_pred ccccccccCCCCcEEEEEEcCccccC---CCeeecCcEEE-cceEEEEEEEECCCCCCcEEEEEEecCCCCCC-CCceE-
Q 003426 41 TVENQQVEDPPTMKFTWTIENFSRLN---TKKHYSDVFVV-GGYKWRILIFPKGNNVDHLSMYLDVADSGTLP-YGWSR- 114 (821)
Q Consensus 41 ~~~s~~~~~~~~~~~tw~I~n~S~l~---~~~~~Sp~f~v-gg~~W~I~~yP~G~~~~~lSvyL~~~~~~~~~-~~W~v- 114 (821)
..++..+++..+..+.|+|.||+++- +..++||+|+- .||.++|.++|+| ..++|+|+++..++.++ ..|.+
T Consensus 394 AIDDIs~t~G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~--~~~~~~~~~l~sG~~D~~L~WP~~ 471 (592)
T 4gwm_A 394 SIDDINLSETRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH--VTNAGIYFHLISGANDDQLQWPCP 471 (592)
T ss_dssp EEEEEEEESSCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS--SSEEEEEEEEECCTTGGGSCSSCC
T ss_pred EEeeEEEeeCCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC--CceEEEEEEEecCCCCCCccCCCC
Confidence 57788889999999999999999974 36899999965 5999999999865 46899999999876543 38999
Q ss_pred EEEEEEEEEecCCCceeeeeccceeec---------------------------C-----CCCCceeccccCCCcccCCC
Q 003426 115 YAQFSLAVVNQIHSKYSIRKDTQHQFN---------------------------A-----RESDWGFTSFMPLGDLYDPS 162 (821)
Q Consensus 115 ~a~f~l~L~n~~~~~~~~~~~~~~~F~---------------------------~-----~~~dwG~~~Fi~~~~L~~~~ 162 (821)
.-+++++|++|+..... .......|+ . .+.+|||+.||+++.|..
T Consensus 472 ~~q~t~~llDQ~pd~~~-rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~~-- 548 (592)
T 4gwm_A 472 WQQATMTLLDQNPDIRQ-RMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLKS-- 548 (592)
T ss_dssp SEEEEEEECCCCSSGGG-CCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHTS--
T ss_pred CCEEEEEEeCCCCChHh-cCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHhh--
Confidence 57899999999643211 111111111 0 123589999999999964
Q ss_pred CCccccccceeeeeeee
Q 003426 163 RGYLVNDSVVVEAEVAV 179 (821)
Q Consensus 163 ~gfl~dD~l~I~~~V~v 179 (821)
+.||+||.+.|.+.|+=
T Consensus 549 r~fiK~d~~~i~~~~eD 565 (592)
T 4gwm_A 549 RDFIKGDDVYILLTVED 565 (592)
T ss_dssp TTSSBTTBEEEEEEEEE
T ss_pred cCcccCCeEEEEEEEEe
Confidence 78999999999998853
No 25
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=96.61 E-value=0.039 Score=54.54 Aligned_cols=190 Identities=13% Similarity=0.130 Sum_probs=103.6
Q ss_pred cccCCCCcccccccCCCcccchhhHHHHhhccHhHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhHHHh
Q 003426 187 SYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKS 266 (821)
Q Consensus 187 ~~~sk~~~g~~GL~N~GnTCYlNS~LQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~ 266 (821)
.|+.....|.+=|+=.-|.||+||++=+|=+.... ++.++.++..++ +..|...
T Consensus 4 ~f~~~~~nG~~vLkq~dNNCwVNaa~l~LQ~~~~~----------------------~~~aw~~f~~Gd----~~~fV~~ 57 (211)
T 3mp2_A 4 PFKTTNLNGKIILKQGDNNCWINACCYQLQAFDFF----------------------NNEAWEKFKKGD----VMDFVNL 57 (211)
T ss_dssp CCCEEEETTEEEECCCTTCHHHHHHHHHHTTCTTC----------------------CCHHHHHHTTTC----CHHHHHH
T ss_pred CCcceeECCEEEEEccCCCcHHHHHHHHHHhcChh----------------------HHHHHHHHhCCC----hHHHHHH
Confidence 34555566777777788999999998766433321 444454444443 3333332
Q ss_pred hCC-CCCCccccCcHHHHHHHHHHHHHHHhcCCcccccccccceeEEeeEEEEeccCceeeeeeeeeeEEEeeCCCCCHH
Q 003426 267 FGW-DTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVY 345 (821)
Q Consensus 267 ~~~-~~~~~~~Q~Da~Ef~~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l~l~v~~~~~l~ 345 (821)
+=| .....++-.||++++..|+..+ =...+...+.|. ||. +.+.+...-..+...+
T Consensus 58 ~Ya~~~~~~G~~gDa~~~L~~Ll~~~----------------~~a~~v~~~~C~-Cg~---~~~~~~G~v~~~~~~~--- 114 (211)
T 3mp2_A 58 CYAATTLARGHSGDAEYLLELMLNDY----------------STAKIVLAAKCG-CGE---KEIVLERAVFKLTPLK--- 114 (211)
T ss_dssp HHHHHTCCTTSCCCHHHHHHHHHTTC----------------CCEEEEEEEEET-TEE---EEEEEEESEEESCCBS---
T ss_pred HHHHcCCCCCCCcCHHHHHHHHHHhh----------------ccceEEEEEEEc-CCC---ceEEEeeeEEEEEeee---
Confidence 211 1345567889999999997321 123445567787 875 3344444444433211
Q ss_pred HHHHHhhhhecccCCCcc-ccccCCeeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCccccCCccCCCC
Q 003426 346 ASFDKYVEVERLEGDNKY-HAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKY 424 (821)
Q Consensus 346 esL~~~~~~E~l~g~n~y-~c~~c~~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~ 424 (821)
.+ -.| .|..|+.... .++.+.+-.++| .++. -|..++.+ +..
T Consensus 115 ------------~~-~~~g~C~~c~~~~~---~~v~~v~Gt~i~----------------~~~~--~~~~v~~~---~~~ 157 (211)
T 3mp2_A 115 ------------ES-FNYGVCGDCMQVNT---CRFLSVEGSGVF----------------VHDI--LSKQTPEA---MFV 157 (211)
T ss_dssp ------------SC-EEEEECTTTCCEEE---EEEEEEEEEEEE----------------EEEE--ECSCCCGG---GBS
T ss_pred ------------cC-CCceECCCCCceeE---EEEEEeeeeEEE----------------EcCC--CCcccccc---cce
Confidence 11 224 6888874322 122222222211 1111 13333331 111
Q ss_pred CCCCcCCCCCccEEEeEEEEEeecCCCccEEEEEEeCCCCCEEEeeCCceeEcc
Q 003426 425 LSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKED 478 (821)
Q Consensus 425 l~~~~~~~~~~~Y~L~gVIvH~G~~~~GHY~ayir~~~~~~W~~fnD~~V~~v~ 478 (821)
++ =.+-++.+|+.++|||+.+... .+ +.+|-..+.+++
T Consensus 158 v~------------~~~~~vF~G~~~~GHY~~~~~~--~~--~~vDG~~~~~~~ 195 (211)
T 3mp2_A 158 VK------------PVMHAVYTGTTQNGHYMVDDIE--HG--YCVDGMGIKPLK 195 (211)
T ss_dssp SC------------CSEEEEEESCTTTCEEEEEETT--TT--EEEETTEEECCC
T ss_pred ee------------ceeEEEEEcCCCCceEEEEecc--cc--eEEeCCceeEcc
Confidence 11 1355677999999999999765 23 889998888885
No 26
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=96.37 E-value=0.039 Score=53.40 Aligned_cols=133 Identities=17% Similarity=0.306 Sum_probs=91.5
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCCCCCCCCCCCcchhchHHHHHhhhccccccceeEEEEeec
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEF 673 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 673 (821)
..++|..++|+.+|+++|++..|+|++++||..- ++ .|.+ +.++.+. .+. ..-.|+|-...
T Consensus 33 ~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~----g~------~L~d---~~tL~~~-~i~-----~~~~l~l~~~~ 93 (172)
T 3u30_A 33 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA----GK------QLED---GRTLSDY-NIQ-----KESTLHLVLRL 93 (172)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET----TE------ECCT---TCBTGGG-TCC-----TTCEEEEEECC
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC----Cc------cccc---cCCHhHc-CCc-----ccceeeeeecc
Confidence 3578889999999999999999999999999741 11 2221 2344332 111 11234443321
Q ss_pred CCCCCCCCCCCCCCCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccc
Q 003426 674 GPDLHPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEH 753 (821)
Q Consensus 674 ~~~~~~~~~~~~~~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~ 753 (821)
...+.+|+|..+-. ++ .+.|..+.+|.+|...|.++.|+|++..-.+|. + ..
T Consensus 94 -------------~gg~~i~Vk~~~g~--~~----~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~------g---~~ 145 (172)
T 3u30_A 94 -------------RGGMQIFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQ 145 (172)
T ss_dssp -------------CCCEEEEEEESSCC--EE----EEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET------T---EE
T ss_pred -------------cccccceeecccCc--ce----eEEecCCCCHHHHHHHHHHHhCCCceeEEEEEC------C---cc
Confidence 12367888875532 32 235789999999999999999999987766653 2 23
Q ss_pred cCccCcccccccCCCCEEEE
Q 003426 754 LDKRTSFRLSQIEDGDIICF 773 (821)
Q Consensus 754 i~~~~t~~~~el~~GDIi~f 773 (821)
++...|+....|++|+.|-.
T Consensus 146 L~D~~tL~~y~i~~g~tl~l 165 (172)
T 3u30_A 146 LEDGRTLSDYNIQKESTLHL 165 (172)
T ss_dssp CCTTSBSGGGTCCTTCEEEE
T ss_pred CCCCCcHHHhCCCCCCEEEE
Confidence 56678999999999998864
No 27
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=96.35 E-value=0.051 Score=51.11 Aligned_cols=135 Identities=17% Similarity=0.312 Sum_probs=93.2
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCCCCCCCCCCCcchhchHHHHHhhhccccccceeEEEEeec
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEF 673 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 673 (821)
.++.+..++|+.+|+++|++..|+|++++||.. ++ ..|. ++.++.+. .+ . +.-.+++....
T Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~-----~g-----~~L~---d~~tL~~~-~i----~-~~~~l~l~~~~ 73 (152)
T 3b08_A 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-----AG-----KQLE---DGRTLSDY-NI----Q-KESTLHLVLRL 73 (152)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-----TT-----EECC---TTSBTGGG-TC----C-TTCEEEEEECC
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChHHeEEEE-----CC-----eECc---CcccHHHh-cc----C-CCCeeEEEeec
Confidence 356888899999999999999999999999864 11 1221 12344332 11 1 12345554321
Q ss_pred CCCCCCCCCCCCCCCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccc
Q 003426 674 GPDLHPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEH 753 (821)
Q Consensus 674 ~~~~~~~~~~~~~~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~ 753 (821)
...+.+++|..+-. ++ .+-++.+.+|.+|...|.+..|+|++..-.+|. + ..
T Consensus 74 -------------~~~~~i~Vk~~~g~--~~----~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~------g---~~ 125 (152)
T 3b08_A 74 -------------RGGMQIFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQ 125 (152)
T ss_dssp -------------TTCEEEEEEESSSC--EE----EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EE
T ss_pred -------------ccccceeeeecCCC--EE----EEEeCCCCcHHHHHHHHHHHhCcChhhEEEEEC------C---EE
Confidence 12367888876542 22 356789999999999999999999887766652 2 23
Q ss_pred cCccCcccccccCCCCEEEEEe
Q 003426 754 LDKRTSFRLSQIEDGDIICFQK 775 (821)
Q Consensus 754 i~~~~t~~~~el~~GDIi~fQ~ 775 (821)
++...|+....+.+|+.|..-.
T Consensus 126 L~d~~tL~~~~i~~~~~i~l~~ 147 (152)
T 3b08_A 126 LEDGRTLSDYNIQKESTLHLVL 147 (152)
T ss_dssp CCTTSBTGGGTCCTTCEEEEEE
T ss_pred CCCCCCHHHcCCCCCCEEEEEE
Confidence 5677899999999999887644
No 28
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=96.35 E-value=0.039 Score=52.59 Aligned_cols=138 Identities=10% Similarity=0.139 Sum_probs=93.2
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCCCCCCCCCCCcchhchHHHHHhhhccccccceeEEEEeec
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEF 673 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 673 (821)
.++.|..++|+.+|+++|++..|+|++++||..+. ++ ..|. ++.++.+. .+. +.-.+++-...
T Consensus 15 ~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~---~g-----~~L~---d~~tL~~y-~i~-----~~~~l~l~~~~ 77 (159)
T 3rt3_B 15 FQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHP---SG-----VALQ---DRVPLASQ-GLG-----PGSTVLLVVDK 77 (159)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEET---TC-----CBCC---TTSCGGGG-TCC-----TTCEEEEEECC
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcC---CC-----CCCC---CCCCHHHc-CCC-----CCCEEEEEccC
Confidence 35788889999999999999999999999997431 11 1231 22344332 111 12234443321
Q ss_pred CCCCCCCCCCCCCCCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccc
Q 003426 674 GPDLHPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEH 753 (821)
Q Consensus 674 ~~~~~~~~~~~~~~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~ 753 (821)
....+-||+|..+- +++. +-|..+.+|.+|...|.+..|+|++..-.+|. + ..
T Consensus 78 ------------~~~~m~i~vk~~~g--~~~~----~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~------G---~~ 130 (159)
T 3rt3_B 78 ------------SDEPLSILVRNNKG--RSST----YEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE------G---KP 130 (159)
T ss_dssp ------------CCCCEEEEEECTTS--CEEE----EEECTTSBHHHHHHHHHHHHTCCGGGEEEEET------T---EE
T ss_pred ------------CCCcEEEEEECCCC--CEEE----EEeCCCCCHHHHHHHHHHHHCCCHHHEEEEEC------C---ee
Confidence 01237788886432 3332 46789999999999999999999987666552 2 23
Q ss_pred cCccCcccccccCCCCEEEEEe
Q 003426 754 LDKRTSFRLSQIEDGDIICFQK 775 (821)
Q Consensus 754 i~~~~t~~~~el~~GDIi~fQ~ 775 (821)
++...|+....|++|+.|-.-.
T Consensus 131 L~d~~tL~~y~i~~g~~l~l~~ 152 (159)
T 3rt3_B 131 LEDQLPLGEYGLKPLSTVFMNL 152 (159)
T ss_dssp CCTTSBGGGGTCCTTCEEEEEE
T ss_pred cCCCCCHHHcCCCCCCEEEEEE
Confidence 5667899999999999887653
No 29
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=96.26 E-value=0.078 Score=60.74 Aligned_cols=136 Identities=11% Similarity=0.126 Sum_probs=92.6
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCCCCCCCCCCCcchhchHHHHHhhhccccccceeEEEEee
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVE 672 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 672 (821)
...+.+.+.+|+.++.+.||+.+|++|+.+|||... +.+.+|..++... ...++.++....... ..-.||-|+.
T Consensus 254 ~F~l~Ls~~~~Y~~la~~va~~l~~dP~~lRf~~~~---~~~~~p~~~i~~~-~~~~L~d~l~~~~~~--~~~~l~YevL 327 (530)
T 2ylm_A 254 GFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQ---GYRDGPGNPLRHN-YEGTLRDLLQFFKPR--QPKKLYYQQL 327 (530)
T ss_dssp CEEEEEETTCCHHHHHHHHHHHHTSCGGGEEEECCC---TTSCSCCSBCCTT-CCSCHHHHSTTSCSS--SCCEEEEEEC
T ss_pred CeEEEECCCCCHHHHHHHHHHHhCCCchhEEEEecc---cccCCCCCccccC-CCCcHHHHhhcccCC--CCCeEEEEEC
Confidence 356789999999999999999999999999999762 2345676666543 345777775322111 1135888876
Q ss_pred cCCCCCCCCCCCCCCCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCC--CCcEEEEEee
Q 003426 673 FGPDLHPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDP--DEEIELYEEI 743 (821)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~--~t~l~lyEEi 743 (821)
.-+ + ........+-++ +.++..+.- .=.++|+++.+|+||+..+.+++|+++ ..+|.+||-.
T Consensus 328 ~ip----l-~ElE~~r~~kv~--w~~~~~~~~--~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~ 391 (530)
T 2ylm_A 328 KMK----I-TDFENRRSFKCI--WLNSQFREE--EITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIV 391 (530)
T ss_dssp SSC----H-HHHHSBCCEEEE--EECTTSCEE--EEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEE
T ss_pred CCC----H-HHHhhCceEEEE--EECCCCceE--EEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEE
Confidence 421 0 000122333333 347766543 667888999999999999999999985 5668888553
No 30
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=94.84 E-value=0.12 Score=54.41 Aligned_cols=200 Identities=17% Similarity=0.224 Sum_probs=106.2
Q ss_pred cccCCCCcccccccCCCcccchhhHHHHhhccHh-HHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhHHH
Q 003426 187 SYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPY-FRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTK 265 (821)
Q Consensus 187 ~~~sk~~~g~~GL~N~GnTCYlNS~LQ~L~~~p~-fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~ 265 (821)
.|+.....|++=|+=.-|.||+||++=+|=+... | -.-+||.++..+..++ +..|..
T Consensus 93 ~w~~~~~~G~~vLkq~dNNCwVNaa~l~LQ~~~~~F------------------~~~~l~~aw~~f~~Gd----~~~FVa 150 (315)
T 2fe8_A 93 KWKFPQVGGLTSIKWADNNCYLSSVLLALQQLEVKF------------------NAPALQEAYYRARAGD----AANFCA 150 (315)
T ss_dssp TSCCCEETTEECCCCCTTTHHHHHHHHHHHTSCCCB------------------SSHHHHHHHHHHHHTC----CHHHHH
T ss_pred CCceEEECCEEEEeecCCccHHHHHHHHHHhcCCcc------------------CCHHHHHHHHHHhCCC----hHHHHH
Confidence 3455566677778888899999999866532211 1 0137788887777665 344433
Q ss_pred hhCC-CCCCccccCcHHHHHHHHHHHHHHHhcCCcccccccccceeEEeeEEEEeccCceeeeeeeeeeEEEee-CCCCC
Q 003426 266 SFGW-DTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDV-KGCRD 343 (821)
Q Consensus 266 ~~~~-~~~~~~~Q~Da~Ef~~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~l~l~v-~~~~~ 343 (821)
.+=| .....++-.||++++..|+... .+... +....+.|..||..... +...-..+ .+..+
T Consensus 151 ~~Ya~~~~~~G~~gDa~~~L~~Ll~~~-----------~v~ta---~~~~~~~C~~Cg~~~~~---~~G~~a~~~~~~~~ 213 (315)
T 2fe8_A 151 LILAYSNKTVGELGDVRETMTHLLQHA-----------NLESA---KRVLNVVCKHCGQKTTT---LTGVEAVMYMGTLS 213 (315)
T ss_dssp HHHHHTTCCTTSCCCHHHHHHHHHTTB-----------CCTTC---EEEEEEEETTTEEEEEE---EETHHHHEEESCSC
T ss_pred HHHHhcCCCCCCCccHHHHHHHHHhcC-----------CeeeE---EEEEeeecCCCCCCeEE---EeccEEEEEeccCc
Confidence 3211 2234667889999999994322 11111 22223679889843222 11110001 01112
Q ss_pred HHHHHHHhhhhecccCCCccccccCCeeeeeeeEEEecCCCeeEEEEEEEEEcccccceeccCceEeCCccccCCccCCC
Q 003426 344 VYASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGK 423 (821)
Q Consensus 344 l~esL~~~~~~E~l~g~n~y~c~~c~~~~a~k~~~~~~lP~vL~i~L~Rf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~ 423 (821)
+ +.|.. |.+ .|-.||.... .++.-.+.|-+|.-+- . ...+++
T Consensus 214 ~-~~~~~--------G~~--~~c~Cg~~~~-~~v~~~~g~~i~~s~~-p--------------------~~~~~~----- 255 (315)
T 2fe8_A 214 Y-DNLKT--------GVS--IPCVCGRDAT-QYLVQQESSFVMMSAP-P--------------------AEYKLQ----- 255 (315)
T ss_dssp H-HHHHH--------CEE--EECTTSSEEE-EEEEEEESSEEEEEEE-E--------------------EEEEEE-----
T ss_pred h-HHhhc--------CCc--ccccCCCEeE-EEEEEeecCEEEEeCC-C--------------------Cccccc-----
Confidence 2 22211 211 3777875322 2222233454444222 1 112220
Q ss_pred CCCCCcCCCCCccEEEeEEEEEeecCCCccEEEEEEeCCCCCEEEeeCCceeEcc
Q 003426 424 YLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKED 478 (821)
Q Consensus 424 ~l~~~~~~~~~~~Y~L~gVIvH~G~~~~GHY~ayir~~~~~~W~~fnD~~V~~v~ 478 (821)
...+ ++..+..|+.++|||..+... ++. +++|-..+.+++
T Consensus 256 ----------~~~~--~~a~vF~G~~~~GHYt~~~~~--~~~-~~~Dg~~~~~~~ 295 (315)
T 2fe8_A 256 ----------QGTF--LCANEYTGNYQCGHYTHITAK--ETL-YRIDGAHLTKMS 295 (315)
T ss_dssp ----------TTSC--SEEEEEESCGGGCEEEEEEES--SSE-EEEETTEEEEES
T ss_pred ----------CCce--EEEEEEECCCCccceEEEecC--Cce-eEEeCCcceecc
Confidence 0011 455667999899999988874 233 899999999885
No 31
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=92.19 E-value=0.41 Score=41.25 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=54.8
Q ss_pred CcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCC
Q 003426 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (821)
Q Consensus 688 ~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~ 767 (821)
..|.|++|-.| ..++ ++-|.++.+++.|+...+++.|+|++.--.+|. + +.|.+..|....++++
T Consensus 6 ~~i~ikVk~~~--g~~i----~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~Fd------G---~~l~~~~Tp~dl~med 70 (94)
T 2io1_B 6 DHINLKVAGQD--GSVV----QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD------G---QPINETDTPAQLEMED 70 (94)
T ss_dssp CEEEEEEECTT--SCEE----EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTCCTTTTTCCT
T ss_pred CeEEEEEECCC--CCEE----EEEECCCCHHHHHHHHHHHHhCCCcccEEEEEC------C---EEcCCCCCHHHcCCCC
Confidence 45777777443 3344 567899999999999999999999865433332 2 3567788999999999
Q ss_pred CCEEEEEeC
Q 003426 768 GDIICFQKS 776 (821)
Q Consensus 768 GDIi~fQ~~ 776 (821)
||+|=+-..
T Consensus 71 gD~Idv~~~ 79 (94)
T 2io1_B 71 EDTIDVFQQ 79 (94)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEEe
Confidence 998865443
No 32
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=91.30 E-value=0.46 Score=38.96 Aligned_cols=57 Identities=21% Similarity=0.299 Sum_probs=47.4
Q ss_pred EEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEE
Q 003426 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICF 773 (821)
Q Consensus 709 ~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~f 773 (821)
.+-|+.+.+|++|+..-+++-|+|.++.|.|- . + + +.++++.|++..|+.|||-|=.
T Consensus 23 ~f~I~~~t~v~kLi~ayc~~~~I~~~~~Irll--F--D-G---dRLdp~~tp~DlemeD~D~IDv 79 (82)
T 3goe_A 23 RLSIPVDFTVKDLIKRYCTEVKISFHERIRLE--F--E-G---EWLDPNDQVQSTELEDEDQVSV 79 (82)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTCCCCTTCEEE--E--T-T---EECCTTSBGGGSSCCTTCEEEE
T ss_pred EEEecCCCCHHHHHHHHHHHcCCCcCceEEEE--E--c-C---cccCccCChhhhCCcCCceeee
Confidence 35688999999999999999999998777642 2 2 2 6789999999999999998744
No 33
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=90.21 E-value=1 Score=38.51 Aligned_cols=73 Identities=11% Similarity=0.127 Sum_probs=54.0
Q ss_pred cEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCC
Q 003426 689 DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDG 768 (821)
Q Consensus 689 ~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~G 768 (821)
.|.|++|- .....+ .+-|.++.+++.|+...+++.|+|++.--.+|. + +.|.+..|....++.+|
T Consensus 5 ~i~ikVk~--~~g~~v----~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~Fd------G---~~l~~~~Tp~dl~medg 69 (91)
T 2io0_B 5 HINLKVAG--QDGSVV----QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD------G---QPINETDTPAQLEMEDE 69 (91)
T ss_dssp EEEEEEEC--TTSCEE----EEEEETTSCTHHHHHHHHHHTTCCSTTEEEEET------T---EECCTTCCTTTTTCCTT
T ss_pred eEEEEEEC--CCCCEE----EEEECCCChHHHHHHHHHHHhCCCcccEEEEEC------C---EEcCCCCCHHHcCCCCC
Confidence 45666663 344444 567899999999999999999999865444442 2 35677889999999999
Q ss_pred CEEEEEeC
Q 003426 769 DIICFQKS 776 (821)
Q Consensus 769 DIi~fQ~~ 776 (821)
|+|=+-..
T Consensus 70 D~Idv~~~ 77 (91)
T 2io0_B 70 DTIDVFQQ 77 (91)
T ss_dssp EEEEEEEC
T ss_pred CEEEEEEe
Confidence 98866544
No 34
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=90.19 E-value=1 Score=40.23 Aligned_cols=70 Identities=14% Similarity=0.213 Sum_probs=52.7
Q ss_pred EEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCE
Q 003426 691 LLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDI 770 (821)
Q Consensus 691 l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDI 770 (821)
.|-||.-+.+...+ ++-|.++.+++.|+...+++.|++.+.--.+|.- +.|.++.|....++.|||+
T Consensus 40 ~I~LKV~~qdg~ev----~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG---------~rI~~~~TP~dL~MEDgD~ 106 (115)
T 3kyd_D 40 YIKLKVIGQDSSEI----HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEG---------QRIADNHTPKELGMEEEDV 106 (115)
T ss_dssp EEEEEEECTTSCEE----EEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETT---------EECCTTCCTTTTTCCTTCE
T ss_pred eEEEEEEcCCCCEE----EEEEccCChHHHHHHHHHHHhCCChhhEEEEECC---------eECCCCCCHHHcCCCCCCE
Confidence 44445545555554 6789999999999999999999988654444532 3567789999999999998
Q ss_pred EEE
Q 003426 771 ICF 773 (821)
Q Consensus 771 i~f 773 (821)
|=+
T Consensus 107 IdV 109 (115)
T 3kyd_D 107 IEV 109 (115)
T ss_dssp EEE
T ss_pred EEE
Confidence 744
No 35
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=89.76 E-value=1.2 Score=36.14 Aligned_cols=56 Identities=11% Similarity=0.175 Sum_probs=45.5
Q ss_pred EEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEE
Q 003426 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICF 773 (821)
Q Consensus 709 ~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~f 773 (821)
++-|.++.+++.|+...+++.|+|++.--.+|. + +.+.+..|....++.+||+|=+
T Consensus 15 ~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd------G---~~l~~~~Tp~~l~medgD~Idv 70 (72)
T 1wm3_A 15 QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD------G---QPINETDTPAQLEMEDEDTIDV 70 (72)
T ss_dssp EEEECTTSCTHHHHHHHHHHHTCCTTTCEEEET------T---EECCTTCCTTTTTCCTTEEEEE
T ss_pred EEEECCCChHHHHHHHHHHHhCCCcceEEEEEC------C---EEcCCCCCHHHcCCCCCCEEEE
Confidence 567899999999999999999999866544442 2 3567788999999999998843
No 36
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=89.65 E-value=0.73 Score=40.89 Aligned_cols=76 Identities=14% Similarity=0.134 Sum_probs=56.7
Q ss_pred CCCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCccccccc
Q 003426 686 SKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI 765 (821)
Q Consensus 686 ~~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el 765 (821)
....|.|++|--|- ..+ .+-|.++.+++.|+...+++.|+|++.--.+|. + +.|.+..|....++
T Consensus 23 ~~~~I~IkVk~~~g--~~i----~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFd------G---~~L~~~~Tp~dl~m 87 (110)
T 2k8h_A 23 ETALVAVKVVNADG--AEM----FFRIKSRTALKKLIDTYCKKQGISRNSVRFLFD------G---TPIDETKTPEELGM 87 (110)
T ss_dssp CCCCEEEEEEETTS--CCE----EEEECTTSSHHHHHHHHHHHHTCCSSSCEEESS------S---CBCCSSSHHHHHHC
T ss_pred CCCeEEEEEECCCC--CEE----EEEECCCChHHHHHHHHHHHhCCCcccEEEEEC------C---EEcCCCCCHHHcCC
Confidence 44567777775433 333 577899999999999999999999875433342 2 45778899999999
Q ss_pred CCCCEEEEEeC
Q 003426 766 EDGDIICFQKS 776 (821)
Q Consensus 766 ~~GDIi~fQ~~ 776 (821)
.+||+|=+-..
T Consensus 88 EDgD~Idv~~~ 98 (110)
T 2k8h_A 88 EDDDVIDAMVE 98 (110)
T ss_dssp SSEEEEEEECC
T ss_pred CCCCEEEEEEc
Confidence 99998866544
No 37
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=89.16 E-value=2.8 Score=36.14 Aligned_cols=83 Identities=10% Similarity=-0.024 Sum_probs=60.3
Q ss_pred CCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccC
Q 003426 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (821)
Q Consensus 687 ~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~ 766 (821)
.+.+-|+++.=..+.+. -.+-|..+.+|++|...|..+.|+|++..-.+|.-= .+..++...+...|+....|+
T Consensus 12 ~~~v~l~It~s~~~~~~----~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~--~g~~~~~L~~D~~tL~~Y~I~ 85 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFS----ADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDD--SGSKVAVLSDDSRPLGFFSPF 85 (97)
T ss_dssp CCCEEEEEEETTSSCCC----EEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECS--SSCBCCCSSGGGSCHHHHCCC
T ss_pred CceEEEEEEECCCCceE----EEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecC--CCcccceecCCcCCHHHCCCC
Confidence 35688888873222222 246789999999999999999999999987777532 122231234778899999999
Q ss_pred CCCEEEEEe
Q 003426 767 DGDIICFQK 775 (821)
Q Consensus 767 ~GDIi~fQ~ 775 (821)
+|+.|..-.
T Consensus 86 ~g~~Ihlvd 94 (97)
T 2kj6_A 86 DGFRLHIID 94 (97)
T ss_dssp SCCEEEEEE
T ss_pred CCCEEEEEe
Confidence 999987654
No 38
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=89.07 E-value=1 Score=38.67 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=54.0
Q ss_pred CCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccC
Q 003426 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (821)
Q Consensus 687 ~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~ 766 (821)
...|.|++| +.....+ ++-|.++.+++.|+...+++.|+|++.--.+|. + +.|.+..|....++.
T Consensus 15 ~~~i~ikV~--~~~g~~i----~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd------G---~~l~~~~Tp~dl~me 79 (93)
T 2d07_B 15 NDHINLKVA--GQDGSVV----QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD------G---QPINETDTPAQLEME 79 (93)
T ss_dssp CCEEEEEEE--CTTSCEE----EEEEETTSCHHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTCCTTTTTCC
T ss_pred CCeEEEEEE--CCCCCEE----EEEEccCCHHHHHHHHHHHHhCCCccceEEEEC------C---EEcCCCCCHHHcCCC
Confidence 345666666 4444444 678899999999999999999999874333332 2 356788899999999
Q ss_pred CCCEEEEE
Q 003426 767 DGDIICFQ 774 (821)
Q Consensus 767 ~GDIi~fQ 774 (821)
+||+|=+-
T Consensus 80 dgD~Idv~ 87 (93)
T 2d07_B 80 DEDTIDVF 87 (93)
T ss_dssp TTEEEEEE
T ss_pred CCCEEEEE
Confidence 99987543
No 39
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=88.98 E-value=0.81 Score=39.20 Aligned_cols=70 Identities=11% Similarity=0.035 Sum_probs=52.9
Q ss_pred CcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCC
Q 003426 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (821)
Q Consensus 688 ~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~ 767 (821)
..|-||+|...-. ++ .+-+.++++|.+|...|.+..|+|++.....|. +. .++...|+...+|++
T Consensus 20 ~mIqI~Vk~~~Gk--k~----~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~------Gk---~LkD~~TL~dY~I~d 84 (93)
T 3plu_A 20 HMIEVVVNDRLGK--KV----RVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKG------GS---VLKDHISLEDYEVHD 84 (93)
T ss_dssp CEEEEEEECTTSC--EE----EEEEETTSBHHHHHHHHHHHHTCCGGGEEEEET------TE---ECCTTSBTGGGTCCT
T ss_pred ceEEEEEECCCCC--EE----EEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeC------CE---EccCcCCHHHcCCCC
Confidence 4577888764333 22 245788999999999999999999987665442 22 477788999999999
Q ss_pred CCEEE
Q 003426 768 GDIIC 772 (821)
Q Consensus 768 GDIi~ 772 (821)
|+.|-
T Consensus 85 gstLh 89 (93)
T 3plu_A 85 QTNLE 89 (93)
T ss_dssp TCEEE
T ss_pred CCEEE
Confidence 99773
No 40
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=88.46 E-value=0.63 Score=38.61 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=52.3
Q ss_pred CcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCC
Q 003426 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (821)
Q Consensus 688 ~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~ 767 (821)
..|.|++|--|-. +.+ ++-|.++.+++.|+...+++.|+|++.--.+|. + +.|.+..|....++.+
T Consensus 6 ~~i~ikV~~~~g~-~~i----~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fd------G---~~l~~~~Tp~~l~med 71 (79)
T 3a4r_A 6 QELRLRVQGKEKH-QML----EISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFD------G---TKLSGKELPADLGLES 71 (79)
T ss_dssp CCEEEEEECSSTT-CEE----EEEECTTSCHHHHHHHHHHHHTCTTCCCEEEET------T---EECCSCCCHHHHTCCT
T ss_pred CEEEEEEEeCCCC-EEE----EEEECCCChHHHHHHHHHHHhCCCcccEEEEEC------C---EEcCCCCCHHHcCCCC
Confidence 4466666543332 133 467899999999999999999999875433442 2 3567788999999999
Q ss_pred CCEEEE
Q 003426 768 GDIICF 773 (821)
Q Consensus 768 GDIi~f 773 (821)
||+|=+
T Consensus 72 gD~Idv 77 (79)
T 3a4r_A 72 GDLIEV 77 (79)
T ss_dssp TCEEEE
T ss_pred CCEEEE
Confidence 998843
No 41
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=88.36 E-value=1.3 Score=36.94 Aligned_cols=73 Identities=14% Similarity=0.295 Sum_probs=56.6
Q ss_pred CCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccC
Q 003426 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (821)
Q Consensus 687 ~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~ 766 (821)
...+-||+|..+-. ++ .+.|..+.+|.+|...|.+..|+|++..-.+|. + ..++...|+....|.
T Consensus 10 ~~~m~i~vk~~~g~--~~----~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~------G---~~L~d~~tL~~~~i~ 74 (88)
T 3dbh_I 10 GGSMLIKVKTLTGK--EI----EIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS------G---KQMNDEKTAADYKIL 74 (88)
T ss_dssp CCCEEEEEECTTSC--EE----EEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET------T---EECCTTSBGGGGTCC
T ss_pred CCcEEEEEEcCCCC--EE----EEEECCCCCHHHHHHHHHHHHCcCHHHEEEEEC------C---eECCCCCcHHHcCCC
Confidence 34588999987543 22 356889999999999999999999987766662 2 235668899999999
Q ss_pred CCCEEEEE
Q 003426 767 DGDIICFQ 774 (821)
Q Consensus 767 ~GDIi~fQ 774 (821)
+|+.|..-
T Consensus 75 ~~~~i~l~ 82 (88)
T 3dbh_I 75 GGSVLHLV 82 (88)
T ss_dssp TTCEEEEC
T ss_pred CCCEEEEE
Confidence 99998764
No 42
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=88.27 E-value=1.5 Score=38.57 Aligned_cols=73 Identities=18% Similarity=0.180 Sum_probs=54.6
Q ss_pred CCCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCccccccc
Q 003426 686 SKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI 765 (821)
Q Consensus 686 ~~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el 765 (821)
....|.|++|- + ...+ .+-|.++.+++.|+...+++.|++.+.--.+|. + +.|.+..|....++
T Consensus 28 ~~~~I~IkV~~-~--g~~i----~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~Fd------G---~rl~~~~Tp~dl~m 91 (106)
T 2eke_C 28 PETHINLKVSD-G--SSEI----FFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD------G---IRIQADQTPEDLDM 91 (106)
T ss_dssp CCSEEEEEEEC-S--SCEE----EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTCCTTTTTC
T ss_pred CCCeEEEEEec-C--CcEE----EEEeCCCCHHHHHHHHHHHHhCCCcccEEEEEC------C---eEcCCCCCHHHcCC
Confidence 44568888775 3 3333 567899999999999999999999864333332 1 35677889999999
Q ss_pred CCCCEEEEE
Q 003426 766 EDGDIICFQ 774 (821)
Q Consensus 766 ~~GDIi~fQ 774 (821)
.+||+|=+-
T Consensus 92 edgD~Idv~ 100 (106)
T 2eke_C 92 EDNDIIEAH 100 (106)
T ss_dssp CTTEEEEEE
T ss_pred CCCCEEEEE
Confidence 999987554
No 43
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=88.13 E-value=1.3 Score=38.94 Aligned_cols=74 Identities=14% Similarity=0.151 Sum_probs=55.5
Q ss_pred CCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccC
Q 003426 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (821)
Q Consensus 687 ~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~ 766 (821)
...|.|++|--| ...+ ++-|.++.+++.|+...+++.|+|++.--.+|. + +.|.+..|....++.
T Consensus 22 ~~~I~IkVk~~~--g~~i----~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~Fd------G---~~l~~~~Tp~dl~me 86 (104)
T 1wz0_A 22 NDHINLKVAGQD--GSVV----QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD------G---QPINETDTPAQLEME 86 (104)
T ss_dssp SCCEEEEEECSS--SCEE----EEEECTTSCHHHHHHHHHHHHTCCTTTSCEESS------S---SBCCTTSCTTTTTCC
T ss_pred CCeEEEEEECCC--CCEE----EEEEcCCChHHHHHHHHHHHhCCCcceEEEEEC------C---EEcCCCCCHHHcCCC
Confidence 355777777543 3333 678999999999999999999999875333332 2 457788999999999
Q ss_pred CCCEEEEEe
Q 003426 767 DGDIICFQK 775 (821)
Q Consensus 767 ~GDIi~fQ~ 775 (821)
+||+|=+-.
T Consensus 87 dgD~Idv~~ 95 (104)
T 1wz0_A 87 DEDTIDVFQ 95 (104)
T ss_dssp TTEEEEECC
T ss_pred CCCEEEEEE
Confidence 999886543
No 44
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=87.98 E-value=1.7 Score=37.34 Aligned_cols=67 Identities=19% Similarity=0.168 Sum_probs=52.0
Q ss_pred EEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEEEeCC
Q 003426 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSP 777 (821)
Q Consensus 710 ~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~~~ 777 (821)
..++.+.+|++|...|.++.|.|+...-.+|..-. .|..+++.-+...++....+++||.|.+....
T Consensus 27 ~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~-~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~~ 93 (97)
T 1wjn_A 27 KQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSK-MPGREIELENDLQPLQFYSVENGDCLLVRWSG 93 (97)
T ss_dssp EEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTT-SCSCEEECCCSSSBSGGGTCCTTCEEEEECCS
T ss_pred EECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCC-CCceeeccCCCcccHhhcCCCCCCEEEEEecC
Confidence 45789999999999999999999988765555211 34333245577889999999999999998644
No 45
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=87.81 E-value=0.55 Score=41.26 Aligned_cols=36 Identities=19% Similarity=0.452 Sum_probs=32.0
Q ss_pred cceEEEeeccccHHHHHHHHHHHhCCCCCceEEEEEe
Q 003426 592 KVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWA 628 (821)
Q Consensus 592 ~~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~~~ 628 (821)
...++.|..++|+.+|+++|++.+|+|++++| |.+.
T Consensus 37 ~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR-li~g 72 (105)
T 4dbg_A 37 VTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQ-WVIG 72 (105)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEET
T ss_pred ceEEEEECCcChHHHHHHHHHHHhCCCHHHEE-Eecc
Confidence 35578899999999999999999999999999 7754
No 46
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=87.80 E-value=1.7 Score=36.82 Aligned_cols=74 Identities=12% Similarity=0.276 Sum_probs=57.0
Q ss_pred CCCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCccccccc
Q 003426 686 SKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI 765 (821)
Q Consensus 686 ~~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el 765 (821)
....+-||+|..+-. ++ .+.|..+.+|.+|...|.+..|+|++..-.+|. + ..++...|+....|
T Consensus 14 ~~~~m~i~Vk~~~g~--~~----~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~------G---k~L~D~~tL~~~gi 78 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGT--HI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNI 78 (91)
T ss_dssp CCCSEEEEEECTTSC--EE----EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET------T---EECCTTCBTGGGTC
T ss_pred CCCeEEEEEEeCCCC--EE----EEEECCCCCHHHHHHHHHhhhCCChhhEEEEEC------C---eECCCcCcHHHCCC
Confidence 345689999977543 32 356889999999999999999999987766662 2 23566789999999
Q ss_pred CCCCEEEEE
Q 003426 766 EDGDIICFQ 774 (821)
Q Consensus 766 ~~GDIi~fQ 774 (821)
.+|+.|-.-
T Consensus 79 ~~g~~i~l~ 87 (91)
T 3v6c_B 79 QKESTLHLV 87 (91)
T ss_dssp CTTCEEEEE
T ss_pred CCCCEEEEE
Confidence 999988653
No 47
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=87.44 E-value=1.8 Score=37.46 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=53.0
Q ss_pred EEEEEEeecCCCC-eEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCC
Q 003426 690 ILLFFKLYDPEKG-ELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDG 768 (821)
Q Consensus 690 ~l~flK~fd~~~~-~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~G 768 (821)
-.|-||.=+.+.. .+ .+.|.++.+++-|+..-+++.|++.++=-.+|. + +.|.++.|....++.||
T Consensus 24 ~~I~LkV~~~dg~~~v----~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FD------G---~rI~~~~TP~dLdMEDg 90 (97)
T 2jxx_A 24 QQLQLRVQGKEKHQTL----EVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFD------G---TKLSGRELPADLGMESG 90 (97)
T ss_dssp SEEEEEEEESSSSCEE----EEEEETTSCHHHHHHHHHHHTTCSSSCCEEEET------T---EECCSCSCHHHHTCCTT
T ss_pred CeEEEEEEcCCCCEEE----EEEECCCChHHHHHHHHHHHHCCCcccEEEEEC------C---EEcCCCCCHHHcCCCCC
Confidence 3566666666653 44 367899999999999999999998764322332 1 45778889999999999
Q ss_pred CEEEE
Q 003426 769 DIICF 773 (821)
Q Consensus 769 DIi~f 773 (821)
|+|=+
T Consensus 91 D~IDv 95 (97)
T 2jxx_A 91 DLIEV 95 (97)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 98854
No 48
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.10 E-value=2.7 Score=34.28 Aligned_cols=72 Identities=10% Similarity=0.044 Sum_probs=54.2
Q ss_pred CcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCC
Q 003426 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (821)
Q Consensus 688 ~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~ 767 (821)
..+-||+|..+- +.+ .+-|+.+.+|.+|...|.+..|+|++..-.+|. +. .++...|+....+.+
T Consensus 6 ~~m~i~vk~~~g--~~~----~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~------gk---~L~d~~tL~~~~i~~ 70 (81)
T 2dzi_A 6 SGMQLTVKALQG--REC----SLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFK------GK---ALADGKRLSDYSIGP 70 (81)
T ss_dssp SSEEEEEEETTS--CEE----EEEECSSCBHHHHHHHHHHHTCCCTTTCEEEET------TE---ECCTTSBGGGGTCCS
T ss_pred CcEEEEEEeCCC--CEE----EEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC------Ce---ECCCCCcHHHcCCCC
Confidence 347788885432 333 356889999999999999999999987766663 21 345678999999999
Q ss_pred CCEEEEE
Q 003426 768 GDIICFQ 774 (821)
Q Consensus 768 GDIi~fQ 774 (821)
|+.|..-
T Consensus 71 g~~i~l~ 77 (81)
T 2dzi_A 71 NSKLNLV 77 (81)
T ss_dssp SBCCEEE
T ss_pred CCEEEEE
Confidence 9987654
No 49
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=86.97 E-value=0.59 Score=40.01 Aligned_cols=60 Identities=23% Similarity=0.339 Sum_probs=50.5
Q ss_pred EeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEE-EEE
Q 003426 706 YVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDII-CFQ 774 (821)
Q Consensus 706 ~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi-~fQ 774 (821)
..-++-|.++.+++-|+...+++.|++.++=.-+|... .|.+..|-...++.+|||| ||+
T Consensus 31 ~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~---------rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 31 DLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGET---------ELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp SEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTE---------ECCTTSCHHHHTCCSSCEEEEEE
T ss_pred cEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCc---------CCCCCCCHhHcCCCCCCEEEEEE
Confidence 34467789999999999999999999998888788665 4677888899999999999 443
No 50
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=86.68 E-value=0.99 Score=37.02 Aligned_cols=71 Identities=17% Similarity=0.162 Sum_probs=52.7
Q ss_pred EEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCC
Q 003426 690 ILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (821)
Q Consensus 690 ~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GD 769 (821)
+-||+|--+- +++ .+-|..+.+|.+|...+.+..|+|++..-.+|. + ..++...|+....+.+||
T Consensus 4 m~i~vk~~~g--~~~----~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~------G---~~L~d~~tl~~~~i~~~~ 68 (79)
T 2uyz_B 4 IKLKVIGQDS--SEI----HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE------G---QRIADNHTPKELGMEEED 68 (79)
T ss_dssp EEEEEECTTC--CEE----EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTCCHHHHTCCTTE
T ss_pred EEEEEECCCC--CEE----EEEECCCChHHHHHHHHHHHHCCCcccEEEEEC------C---EEeCCCCCHHHcCCCCCC
Confidence 5566665432 232 356789999999999999999999976555552 2 245677899999999999
Q ss_pred EEEEEe
Q 003426 770 IICFQK 775 (821)
Q Consensus 770 Ii~fQ~ 775 (821)
.|-.-.
T Consensus 69 ~i~l~~ 74 (79)
T 2uyz_B 69 VIEVYQ 74 (79)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 987653
No 51
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=86.17 E-value=5.4 Score=34.18 Aligned_cols=81 Identities=10% Similarity=-0.070 Sum_probs=59.3
Q ss_pred CCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccC
Q 003426 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (821)
Q Consensus 687 ~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~ 766 (821)
.+.|-|+++.=....+ .-.+-+..+.+|++|...|..+.|+|++..-.+|..= +..+....+...|+....|+
T Consensus 13 ~~~v~l~It~s~~~~~----~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~---g~~~~~L~~D~~tL~~Y~i~ 85 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAV----AFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKG---DTCVSTMDNNDAQLGYYANS 85 (95)
T ss_dssp CCEEEEEEEESSCSCE----EEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEET---TEEEEECCCTTSBHHHHCCS
T ss_pred CCeEEEEEEECCCCce----EEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecC---CcccceeCCCCCCHhHCCcC
Confidence 4668888887322222 2346688999999999999999999999987777641 11121234778899999999
Q ss_pred CCCEEEEE
Q 003426 767 DGDIICFQ 774 (821)
Q Consensus 767 ~GDIi~fQ 774 (821)
+|+.|..-
T Consensus 86 ~gstihlv 93 (95)
T 2kjr_A 86 DGLRLHVV 93 (95)
T ss_dssp SSCEEEEE
T ss_pred CCCEEEEE
Confidence 99988764
No 52
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=86.10 E-value=0.85 Score=39.07 Aligned_cols=34 Identities=12% Similarity=0.056 Sum_probs=30.9
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
...+.+..++|+.+|+++|++..|+|++++||+.
T Consensus 33 k~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif 66 (93)
T 3plu_A 33 KVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK 66 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe
Confidence 3467888999999999999999999999999976
No 53
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=86.06 E-value=1.2 Score=38.27 Aligned_cols=74 Identities=16% Similarity=0.150 Sum_probs=56.2
Q ss_pred CCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccC
Q 003426 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (821)
Q Consensus 687 ~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~ 766 (821)
...+-||+|..+- +++ .+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++...|+....|+
T Consensus 19 ~~~m~I~Vk~~~g--~~~----~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~------G---k~L~d~~tl~dy~i~ 83 (97)
T 1wyw_B 19 GEYIKLKVIGQDS--SEI----HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE------G---QRIADNHTPKELGME 83 (97)
T ss_dssp CCEEEEEEECTTC--CEE----EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTCCHHHHTCC
T ss_pred CCcEEEEEEeCCC--CEE----EEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC------C---eEcCCCCCHHHCCCC
Confidence 4558888886543 333 356889999999999999999999986655553 2 245677899999999
Q ss_pred CCCEEEEEe
Q 003426 767 DGDIICFQK 775 (821)
Q Consensus 767 ~GDIi~fQ~ 775 (821)
+||+|..-.
T Consensus 84 ~g~~I~l~~ 92 (97)
T 1wyw_B 84 EEDVIEVYQ 92 (97)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEE
Confidence 999987643
No 54
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=86.03 E-value=1.4 Score=36.49 Aligned_cols=72 Identities=13% Similarity=0.218 Sum_probs=54.7
Q ss_pred EEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCC
Q 003426 690 ILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (821)
Q Consensus 690 ~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GD 769 (821)
+-||+|..+-.. + .+.|+.+.+|.+|...|.+..|+|++..-.+|.- ..++...|+....|.+|+
T Consensus 4 m~i~vk~~~g~~--~----~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g---------~~L~d~~tL~~~~i~~~~ 68 (85)
T 3n3k_B 4 MRIVVKTLMGRT--I----ILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG---------KQLEDGRTLSDYNIHNHS 68 (85)
T ss_dssp CEEEEECGGGCE--E----EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETB---------EECCTTCBTTTTTCCTTC
T ss_pred EEEEEEeCCCCE--E----EEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECC---------eECCCCCCHHHCCCCCCC
Confidence 567777765332 2 2467889999999999999999999877666632 235667799999999999
Q ss_pred EEEEEeC
Q 003426 770 IICFQKS 776 (821)
Q Consensus 770 Ii~fQ~~ 776 (821)
.|..-..
T Consensus 69 ~i~l~~r 75 (85)
T 3n3k_B 69 ALYLLLK 75 (85)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 9877544
No 55
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=85.68 E-value=1.2 Score=38.41 Aligned_cols=74 Identities=15% Similarity=0.270 Sum_probs=55.5
Q ss_pred CCCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCccccccc
Q 003426 686 SKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI 765 (821)
Q Consensus 686 ~~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el 765 (821)
....+-||+|..+-. ++ .+.|..+.+|.+|...|.++.|+|++..-.+|. + ..++...++....|
T Consensus 19 ~~~~m~I~Vk~~~g~--~~----~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------G---k~L~D~~tL~~~~i 83 (98)
T 4hcn_B 19 QGRPMQIFVKTLTGK--TI----TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNI 83 (98)
T ss_dssp ---CCEEEEEETTCC--EE----EEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET------T---EECCTTCBSGGGTC
T ss_pred CCCeEEEEEEeCCCC--EE----EEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC------C---EECCCCCcHHHCCC
Confidence 345588999987643 22 346788999999999999999999987766652 2 23567789999999
Q ss_pred CCCCEEEEE
Q 003426 766 EDGDIICFQ 774 (821)
Q Consensus 766 ~~GDIi~fQ 774 (821)
.+|+.|-.-
T Consensus 84 ~~g~~i~l~ 92 (98)
T 4hcn_B 84 QKESTLHLV 92 (98)
T ss_dssp CTTEEEEEE
T ss_pred CCCCEEEEE
Confidence 999988764
No 56
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=85.35 E-value=2.3 Score=35.84 Aligned_cols=62 Identities=8% Similarity=-0.060 Sum_probs=48.4
Q ss_pred EEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEE
Q 003426 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICF 773 (821)
Q Consensus 710 ~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~f 773 (821)
.-++.+.+|.+|...|.++.|+|++..-.+|..- .-..+...++...|+....|++|..|-.
T Consensus 19 ~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~--~~~~~g~~l~d~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 19 KRYGLAQTIESIKENVFTHFATPPEYMQLQLIDD--RGITIEKNMANDKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp EEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECT--TSCEEESSCCTTSBGGGGTCCTTCEEEE
T ss_pred EEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecC--CCCceeeEcCCCCCHHHCCCCCCCEEEE
Confidence 5578999999999999999999999986666432 1111224577888999999999999943
No 57
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=85.29 E-value=2.1 Score=35.38 Aligned_cols=73 Identities=14% Similarity=0.256 Sum_probs=54.9
Q ss_pred cEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCC
Q 003426 689 DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDG 768 (821)
Q Consensus 689 ~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~G 768 (821)
.+-||+|..+-. ++ .+.|+.+.+|.+|...|.+..|+|++..-.+|. + ..++...|+....|.+|
T Consensus 3 ~m~i~vk~~~g~--~~----~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~------g---~~L~d~~tL~~~~i~~~ 67 (85)
T 3mtn_B 3 HMQIFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQKW 67 (85)
T ss_dssp CEEEEEECTTSC--EE----EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET------T---EECCTTSBTGGGTCCTT
T ss_pred eEEEEEEcCCCC--EE----EEEECCCCCHHHHHHHHHHHHCcChHHEEEEEC------C---EECCCCCCHHHcCCCCC
Confidence 367788876532 22 346789999999999999999999987765552 2 23556789999999999
Q ss_pred CEEEEEeC
Q 003426 769 DIICFQKS 776 (821)
Q Consensus 769 DIi~fQ~~ 776 (821)
+.|-.-..
T Consensus 68 ~~l~l~~r 75 (85)
T 3mtn_B 68 STLFLLLR 75 (85)
T ss_dssp CEEEEECC
T ss_pred CEEEEEEE
Confidence 98876543
No 58
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=85.23 E-value=3.8 Score=35.70 Aligned_cols=76 Identities=12% Similarity=0.113 Sum_probs=58.4
Q ss_pred CCCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCccccccc
Q 003426 686 SKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI 765 (821)
Q Consensus 686 ~~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el 765 (821)
....+-||+|..+- + + .+.|..+.+|.+|...|.+..|+|++..-.+|. +. .++...|+....|
T Consensus 14 ~~~~m~I~Vk~~~g---~--~--~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------Gk---~L~D~~tL~~~gi 77 (106)
T 1wx7_A 14 DPHLIKVTVKTPKD---K--E--DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA------GK---ILKDPDSLAQCGV 77 (106)
T ss_dssp CSSEEEEEEECSSC---E--E--EEEEETTCCHHHHHHHHHHHHTCCTTTEEEEET------TE---ECCTTSCHHHHTC
T ss_pred CCceEEEEEEeCCC---c--E--EEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC------CE---ECCCcCcHHHcCC
Confidence 34558899998542 2 2 567889999999999999999999877666652 22 3456789999999
Q ss_pred CCCCEEEEEeCC
Q 003426 766 EDGDIICFQKSP 777 (821)
Q Consensus 766 ~~GDIi~fQ~~~ 777 (821)
.+|+.|..-...
T Consensus 78 ~~g~~i~l~~~~ 89 (106)
T 1wx7_A 78 RDGLTVHLVIKR 89 (106)
T ss_dssp CTTEEEEEEECC
T ss_pred CCCCEEEEEEcC
Confidence 999998877554
No 59
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=85.01 E-value=1.9 Score=35.20 Aligned_cols=70 Identities=6% Similarity=0.096 Sum_probs=53.2
Q ss_pred EEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCC
Q 003426 690 ILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (821)
Q Consensus 690 ~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GD 769 (821)
+-||+|..+-. ++ .+.|..+.+|.+|...|.+..|+|++..-.+|. + ..++...|+....|.+|+
T Consensus 5 m~i~Vk~~~g~--~~----~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~------G---~~L~d~~tL~~~~i~~~~ 69 (79)
T 3phx_B 5 LSILVRNNKGR--SS----TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE------G---KPLEDQLPLGEYGLKPLS 69 (79)
T ss_dssp EEEEEECTTSC--EE----EEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTSBGGGGTCCTTC
T ss_pred EEEEEEeCCCC--EE----EEEECCcChHHHHHHHHHhhcCCCHHHEEEEEC------C---EECCCCCcHHHCCCCCCC
Confidence 66777765432 22 256889999999999999999999987665552 2 235667899999999999
Q ss_pred EEEEE
Q 003426 770 IICFQ 774 (821)
Q Consensus 770 Ii~fQ 774 (821)
.|-.-
T Consensus 70 ~l~l~ 74 (79)
T 3phx_B 70 TVFMN 74 (79)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88654
No 60
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=84.93 E-value=4.6 Score=32.50 Aligned_cols=70 Identities=14% Similarity=0.245 Sum_probs=52.2
Q ss_pred EEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCC
Q 003426 690 ILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (821)
Q Consensus 690 ~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GD 769 (821)
+-||+|. + .++. .+-++.+.+|.+|...|.+..|+|++..-.+|. +. .++...|+....+.+|+
T Consensus 5 m~i~vk~-~--g~~~----~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~------gk---~L~d~~tL~~~~i~~g~ 68 (77)
T 2bwf_A 5 LNIHIKS-G--QDKW----EVNVAPESTVLQFKEAINKANGIPVANQRLIYS------GK---ILKDDQTVESYHIQDGH 68 (77)
T ss_dssp EEEEEEE-T--TEEE----EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET------TE---ECCTTSBTGGGTCCTTC
T ss_pred EEEEEEE-C--CEEE----EEEECCCCcHHHHHHHHHHHhCCCHHHEEEEEC------Ce---EcCCCCCHHHcCCCCCC
Confidence 5677776 2 2222 356789999999999999999999877655552 22 35567899999999999
Q ss_pred EEEEEe
Q 003426 770 IICFQK 775 (821)
Q Consensus 770 Ii~fQ~ 775 (821)
.|..-.
T Consensus 69 ~i~l~~ 74 (77)
T 2bwf_A 69 SVHLVK 74 (77)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 987654
No 61
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=84.83 E-value=1.1 Score=38.62 Aligned_cols=34 Identities=9% Similarity=0.086 Sum_probs=31.4
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIW 627 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~~ 627 (821)
..+++..++|+.+|+++|.+..|+|++++||...
T Consensus 30 ~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~ 63 (95)
T 2kjr_A 30 FEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVF 63 (95)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEE
T ss_pred EEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 4679999999999999999999999999999874
No 62
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=84.59 E-value=0.68 Score=39.12 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=31.3
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIW 627 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~~ 627 (821)
...|+.+++|+.+|+++|.+..|+|++++||...
T Consensus 17 ~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~ 50 (86)
T 4b6w_A 17 PEKRYGLAQTIESIKENVFTHFATPPEYMQLQLI 50 (86)
T ss_dssp EEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEE
T ss_pred EEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEe
Confidence 3579999999999999999999999999999875
No 63
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=84.47 E-value=2.1 Score=41.56 Aligned_cols=74 Identities=19% Similarity=0.205 Sum_probs=55.3
Q ss_pred CCCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCccccccc
Q 003426 686 SKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI 765 (821)
Q Consensus 686 ~~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el 765 (821)
+...|.|.++ + +... -++-|.++.+++.|+...+++.|+|.+.--.+|.- +.|.++.|....++
T Consensus 54 p~e~InLKVk--~-dG~e----V~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDG---------qRI~~ddTPeDLdM 117 (207)
T 3tix_A 54 PETHINLKVS--D-GSSE----IFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDG---------IEIQADQTPEDLDM 117 (207)
T ss_dssp -CCEEEEEEE--C-SSCE----EEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETT---------EECCSSCCTTTTTC
T ss_pred CCCcEEEEEe--c-CCCE----EEEEEccCChHHHHHHHHHHHhCCCcccEEEEECC---------eecCCCCCHHHcCC
Confidence 4567888886 3 3333 36788999999999999999999998554444422 35778899999999
Q ss_pred CCCCEEEEEe
Q 003426 766 EDGDIICFQK 775 (821)
Q Consensus 766 ~~GDIi~fQ~ 775 (821)
.|||+|=+-.
T Consensus 118 EDGDtIDV~l 127 (207)
T 3tix_A 118 EDNDIIEAHR 127 (207)
T ss_dssp CTTEEEEECC
T ss_pred CCCCEEEEEE
Confidence 9999775543
No 64
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=83.55 E-value=3.9 Score=33.96 Aligned_cols=73 Identities=16% Similarity=0.275 Sum_probs=55.7
Q ss_pred cEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCC
Q 003426 689 DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDG 768 (821)
Q Consensus 689 ~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~G 768 (821)
.+-||+|..+- +++ .+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++...|+....+.+|
T Consensus 7 ~m~i~Vk~~~g--~~~----~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~------G---k~L~d~~tL~~~~i~~g 71 (87)
T 1wh3_A 7 GIQVFVKNPDG--GSY----AYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQ------G---QVLQDWLGLGIYGIQDS 71 (87)
T ss_dssp SEEEEEEETTT--EEE----EEEECSSSBHHHHHHHHHHHTCCCTTTEEEEET------T---EECCSSSBHHHHTCCTT
T ss_pred CEEEEEEcCCC--CEE----EEEeCCCChHHHHHHHHHHHhCCChHHEEEEEC------C---EEccCCCCHHHCCCCCC
Confidence 47788887542 222 356889999999999999999999988766663 2 23556789999999999
Q ss_pred CEEEEEeC
Q 003426 769 DIICFQKS 776 (821)
Q Consensus 769 DIi~fQ~~ 776 (821)
+.|..-..
T Consensus 72 ~~i~l~~~ 79 (87)
T 1wh3_A 72 DTLILSKK 79 (87)
T ss_dssp EEEEEEEC
T ss_pred CEEEEEEe
Confidence 98876544
No 65
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=83.53 E-value=5.1 Score=36.21 Aligned_cols=75 Identities=12% Similarity=0.084 Sum_probs=57.3
Q ss_pred CCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccC
Q 003426 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (821)
Q Consensus 687 ~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~ 766 (821)
...+-||+|.- .+++ .+-|..+.+|.+|...|.+..|+|++..-.+|. +. .++...|+....|.
T Consensus 30 ~~~m~I~Vk~~---g~~~----~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~------Gk---~L~D~~tL~dygI~ 93 (125)
T 1j8c_A 30 PKIIKVTVKTP---KEKE----EFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA------GK---ILKDQDTLIQHGIH 93 (125)
T ss_dssp CCCEEEEEECS---SCEE----EEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET------TE---EESTTSCGGGTTCS
T ss_pred CCcEEEEEEeC---CeEE----EEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC------CE---EcCCCCCHHHcCCC
Confidence 34588999985 3332 457889999999999999999999987766663 22 24567899999999
Q ss_pred CCCEEEEEeCC
Q 003426 767 DGDIICFQKSP 777 (821)
Q Consensus 767 ~GDIi~fQ~~~ 777 (821)
+|+.|..-...
T Consensus 94 ~gstI~lv~~~ 104 (125)
T 1j8c_A 94 DGLTVHLVIKR 104 (125)
T ss_dssp SSEEEEEEEC-
T ss_pred CCCEEEEEecc
Confidence 99998776544
No 66
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=83.45 E-value=1.3 Score=38.33 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=31.8
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEEEe
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWA 628 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~~~ 628 (821)
..++|..++|+.+|+++|.+..|+|++++||....
T Consensus 29 ~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g 63 (97)
T 2kj6_A 29 ADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYD 63 (97)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEEC
T ss_pred EEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEec
Confidence 46799999999999999999999999999997643
No 67
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=83.15 E-value=4.5 Score=35.02 Aligned_cols=77 Identities=14% Similarity=0.184 Sum_probs=54.3
Q ss_pred EEEEEEeecCC--CCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCC
Q 003426 690 ILLFFKLYDPE--KGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (821)
Q Consensus 690 ~l~flK~fd~~--~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~ 767 (821)
+-|++|.-.-. .+++ .+-|..+.+|.+|...|.+..|+|++..-.+|.- .. .-|...|+....|.+
T Consensus 8 m~I~Vk~~~~~~~~~~~----~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~g------k~--L~D~~~tL~~ygI~~ 75 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTF----SLQVNPDFELSNFRVLCELESGVPAEEAQIVYME------QL--LTDDHCSLGSYGLKD 75 (102)
T ss_dssp EEEEEEECCCCCCCCEE----EEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETT------EE--ECCSSSBHHHHTCCT
T ss_pred EEEEEEECCCCcCceEE----EEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECC------EE--CCCCcccHHHCCCCC
Confidence 55666654221 1222 2568899999999999999999999877666632 11 223446899999999
Q ss_pred CCEEEEEeCCC
Q 003426 768 GDIICFQKSPP 778 (821)
Q Consensus 768 GDIi~fQ~~~~ 778 (821)
|+.|.+-....
T Consensus 76 g~~l~l~~~~~ 86 (102)
T 1v5o_A 76 GDMVVLLQKDN 86 (102)
T ss_dssp TEEEEECBCCC
T ss_pred CCEEEEEECCC
Confidence 99998876543
No 68
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=83.05 E-value=3.3 Score=41.77 Aligned_cols=68 Identities=6% Similarity=0.154 Sum_probs=54.1
Q ss_pred EEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEEEeCCC
Q 003426 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSPP 778 (821)
Q Consensus 709 ~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~~~~ 778 (821)
.+.+++..+|.+|...+++++++|.++++.||-=. ..+......+.+.|+..+.|++|+-|+.+....
T Consensus 155 ~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~--~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~ 222 (231)
T 3jyu_A 155 SCHFSKADTIATIEKEMRKLFNIPAERETRLWNKY--MSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNE 222 (231)
T ss_dssp EEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECS--SSSSCEECCCTTSBTTTTTCCTTEEEEEEECCT
T ss_pred EEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEec--CCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecC
Confidence 45679999999999999999999999889988633 222221334457899999999999999998754
No 69
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=82.98 E-value=3 Score=41.69 Aligned_cols=67 Identities=10% Similarity=0.237 Sum_probs=53.6
Q ss_pred EEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCc-cCcccccccCCCCEEEEEeCCC
Q 003426 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDK-RTSFRLSQIEDGDIICFQKSPP 778 (821)
Q Consensus 709 ~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~-~~t~~~~el~~GDIi~fQ~~~~ 778 (821)
.+.+++..+|.+|...+++++++|.++++.||-=. ..+.. +.++. ..|+..+.|++|+-|+.+....
T Consensus 143 ~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~--~~~~~-~~L~~~~~tl~~~~l~~~Q~illE~r~~ 210 (217)
T 4a3p_A 143 TRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKY--MSNTF-EPLNKPDSTIQDAGLYQGQVLVIEQKNE 210 (217)
T ss_dssp EEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEE--ETTEE-EECCCTTSBHHHHTCCTTCEEEEEECCC
T ss_pred EEEEcccchHHHHHHHHHHHhCCCCCCceEEEEec--CCCCe-eecCCCCCCHHHhCCCCCCEEEEEEecC
Confidence 45679999999999999999999999888888633 12333 44444 6799999999999999987653
No 70
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=82.72 E-value=2.1 Score=35.96 Aligned_cols=72 Identities=14% Similarity=0.274 Sum_probs=54.3
Q ss_pred EEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCE
Q 003426 691 LLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDI 770 (821)
Q Consensus 691 l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDI 770 (821)
-||+|..+-. ++ .+.|..+.+|.+|...|.+..|+|++..-.+|. + ..++...|+....|.+|+.
T Consensus 2 ~I~Vk~~~g~--~~----~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------G---k~L~D~~tL~~~~i~~g~~ 66 (88)
T 4fbj_B 2 LIKVKTLTGK--EI----EIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS------G---KQMNDEKTAADYKILGGSV 66 (88)
T ss_dssp EEEEEETTCC--EE----EEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET------T---EECCTTSBTTTTTCCTTCE
T ss_pred EEEEEcCCCC--EE----EEEECCCCCHHHHHHHHHHHHCcChhHEEEEEC------C---eECCCCCcHHHcCCCCCCE
Confidence 3666765432 22 346788999999999999999999988766662 2 2356688999999999999
Q ss_pred EEEEeCC
Q 003426 771 ICFQKSP 777 (821)
Q Consensus 771 i~fQ~~~ 777 (821)
|-.-...
T Consensus 67 l~l~~rl 73 (88)
T 4fbj_B 67 LHLVLAL 73 (88)
T ss_dssp EEEECBC
T ss_pred EEEEEEC
Confidence 8876544
No 71
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=82.62 E-value=2.5 Score=36.69 Aligned_cols=70 Identities=10% Similarity=-0.015 Sum_probs=53.8
Q ss_pred CcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCC
Q 003426 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (821)
Q Consensus 688 ~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~ 767 (821)
..+-||+|--. .+++. +-|..+++|.+|...|.+.-|+|++..-.+|. +. .++...|+....|++
T Consensus 27 ~mm~I~VKtl~--Gk~i~----lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~------Gk---~L~D~~TL~dygI~~ 91 (100)
T 1uh6_A 27 TMIEVVCNDRL--GKKVR----VKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW------YT---IFKDHVSLGDYEIHD 91 (100)
T ss_dssp CEEEEEEECSS--SSCEE----EEEETTSBHHHHHHHHHHHHCCCGGGCEEEET------TE---ECCSSCBHHHHTCCT
T ss_pred CeEEEEEECCC--CCEEE----EEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEC------CE---ECCCCCCHHHcCCCC
Confidence 34788888443 24443 57889999999999999999999887766654 32 357788999999999
Q ss_pred CCEEE
Q 003426 768 GDIIC 772 (821)
Q Consensus 768 GDIi~ 772 (821)
|+-|.
T Consensus 92 gstlh 96 (100)
T 1uh6_A 92 GMNLE 96 (100)
T ss_dssp TEEEE
T ss_pred CCEEE
Confidence 99654
No 72
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=82.34 E-value=3.2 Score=35.38 Aligned_cols=72 Identities=14% Similarity=0.160 Sum_probs=55.6
Q ss_pred CcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCC
Q 003426 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (821)
Q Consensus 688 ~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~ 767 (821)
..+-||+|.- .+++ .+.|..+.+|.+|...|.+..|+|++..-.+|. + ..++...|+....|.+
T Consensus 16 ~~m~i~Vk~~---g~~~----~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~------G---k~L~D~~tL~~~gi~~ 79 (96)
T 1wx8_A 16 RIIRVSVKTP---QDCH----EFFLAENSNVRRFKKQISKYLHCNADRLVLIFT------G---KILRDQDILSQRGILD 79 (96)
T ss_dssp CEEEEEEECS---SSEE----EEEEETTCCHHHHHHHHHHHTCSCTTTBCCEET------T---EECCTTSCHHHHTCCT
T ss_pred CcEEEEEEEC---CeEE----EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC------C---EECCCcCCHHHCCCCC
Confidence 4588888875 3333 456889999999999999999999987766653 2 1356678999999999
Q ss_pred CCEEEEEe
Q 003426 768 GDIICFQK 775 (821)
Q Consensus 768 GDIi~fQ~ 775 (821)
|+.|..-.
T Consensus 80 g~~i~l~~ 87 (96)
T 1wx8_A 80 GSTVHVVV 87 (96)
T ss_dssp TEEEECCB
T ss_pred CCEEEEEE
Confidence 99886643
No 73
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=82.04 E-value=4.3 Score=34.00 Aligned_cols=73 Identities=5% Similarity=0.065 Sum_probs=54.6
Q ss_pred EEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCC
Q 003426 690 ILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (821)
Q Consensus 690 ~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GD 769 (821)
+-||+|..+- +++ .+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++...|+....|.+|+
T Consensus 5 m~I~Vk~~~g--~~~----~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~------G---k~L~D~~tL~~~~I~~g~ 69 (88)
T 2hj8_A 5 LSILVRNNKG--RSS----TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE------G---KPLEDQLPLGEYGLKPLS 69 (88)
T ss_dssp EEEEEEETTS--CEE----EEEEESSSBHHHHHHHHHHHTCSCTTTEEEESS------S---SCCCTTSBHHHHHCSTTC
T ss_pred EEEEEECCCC--CEE----EEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC------C---EECCCCCcHHHcCCCCCC
Confidence 5677776542 222 356789999999999999999999987766652 2 235667899999999999
Q ss_pred EEEEEeCC
Q 003426 770 IICFQKSP 777 (821)
Q Consensus 770 Ii~fQ~~~ 777 (821)
.|..-...
T Consensus 70 ~i~l~~~~ 77 (88)
T 2hj8_A 70 TVFMNLRL 77 (88)
T ss_dssp EEEEEEC-
T ss_pred EEEEEEEc
Confidence 88776544
No 74
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=81.77 E-value=1.4 Score=36.51 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=29.9
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+.+..++|+.+|+++|++..++|++++||+.
T Consensus 16 ~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~ 48 (85)
T 3n3k_B 16 IILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 356888899999999999999999999999975
No 75
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=81.44 E-value=7 Score=33.71 Aligned_cols=76 Identities=13% Similarity=0.120 Sum_probs=58.3
Q ss_pred CCCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCccccccc
Q 003426 686 SKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI 765 (821)
Q Consensus 686 ~~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el 765 (821)
....+-||+|.-+- + + .+-|..+.+|.+|...|.+..|+|++..-.+|. +. .++...|+....|
T Consensus 19 ~~~~m~I~Vk~~~g---~--~--~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~------Gk---~L~D~~tL~~ygI 82 (100)
T 1yqb_A 19 SPHLIKVTVKTPKD---K--E--DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA------GK---ILKDPDSLAQCGV 82 (100)
T ss_dssp CTTEEEEEEECSSC---E--E--EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET------TE---ECCTTSBHHHHTC
T ss_pred CCCeEEEEEEcCCC---c--E--EEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC------CE---ECCCcCcHHHCCC
Confidence 34568899998542 2 2 567899999999999999999999877666552 22 3556789999999
Q ss_pred CCCCEEEEEeCC
Q 003426 766 EDGDIICFQKSP 777 (821)
Q Consensus 766 ~~GDIi~fQ~~~ 777 (821)
.+|+.|..-...
T Consensus 83 ~~gstI~l~~r~ 94 (100)
T 1yqb_A 83 RDGLTVHLVIKR 94 (100)
T ss_dssp CTTCEEEEEECC
T ss_pred CCCCEEEEEEcC
Confidence 999998776544
No 76
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=80.86 E-value=8 Score=33.38 Aligned_cols=73 Identities=11% Similarity=0.101 Sum_probs=55.7
Q ss_pred CcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCC
Q 003426 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (821)
Q Consensus 688 ~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~ 767 (821)
..+-||+|.- .+++ .+-|..+.+|.+|...|.+..|+|++..-.+|. +. .++...|+....|.+
T Consensus 24 ~~m~I~Vk~~---g~~~----~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------Gk---~L~D~~tL~~~gI~~ 87 (101)
T 2klc_A 24 KIMKVTVKTP---KEKE----EFAVPENSSVQQFKEEISKRFKSHTDQLVLIFA------GK---ILKDQDTLSQHGIHD 87 (101)
T ss_dssp CCEEEEEECS---SCEE----EEEECSCCCHHHHHHHHHHHHTCCGGGEEEEET------TE---EECTTCCTGGGTCCT
T ss_pred CeEEEEEEeC---CcEE----EEEECCCCCHHHHHHHHHHHHCcChhhEEEEEC------CE---ECCCcCcHHHcCCCC
Confidence 4578888875 2332 456789999999999999999999877666652 22 345678999999999
Q ss_pred CCEEEEEeC
Q 003426 768 GDIICFQKS 776 (821)
Q Consensus 768 GDIi~fQ~~ 776 (821)
|+.|..-..
T Consensus 88 g~~I~l~~~ 96 (101)
T 2klc_A 88 GLTVHLVIK 96 (101)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEEc
Confidence 998876544
No 77
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=80.77 E-value=2.3 Score=34.13 Aligned_cols=59 Identities=14% Similarity=0.224 Sum_probs=46.3
Q ss_pred EEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEEEeC
Q 003426 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKS 776 (821)
Q Consensus 709 ~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~~ 776 (821)
.+-++.+.+|++|...|.+..|+|++..-.+|. +. .++...|+....+.+|+.|..-..
T Consensus 14 ~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~------g~---~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------GK---QLEDGRTLSDYNIQRESTLHLVLR 72 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET------TE---ECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC------Ce---ECCCCCcHHHcCCCCCCEEEEEEe
Confidence 345788999999999999999999877666652 21 345678999999999998876543
No 78
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=80.71 E-value=1.3 Score=37.97 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=31.2
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIW 627 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~~ 627 (821)
..+++..++|+.+|+++|++..|+|++++||...
T Consensus 21 ~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~ 54 (95)
T 1v6e_A 21 SEKRYSRSLTIAEFKCKLELVVGSPASCMELELY 54 (95)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEE
T ss_pred EEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEe
Confidence 4678999999999999999999999999999764
No 79
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=80.50 E-value=1.8 Score=35.77 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=29.9
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+++..++|+.+|+++|++..++|++++||..
T Consensus 16 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~ 48 (85)
T 3mtn_B 16 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChHHEEEEE
Confidence 467888899999999999999999999999874
No 80
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=80.15 E-value=3 Score=35.49 Aligned_cols=69 Identities=12% Similarity=0.241 Sum_probs=53.1
Q ss_pred cEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCC
Q 003426 689 DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDG 768 (821)
Q Consensus 689 ~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~G 768 (821)
.+-||+|. .+++ .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++...|+....|.+|
T Consensus 19 ~m~I~Vk~----g~~~----~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------G---k~L~D~~tL~~y~I~~g 81 (93)
T 2l7r_A 19 SMQLFVRA----QELH----TFEVTGQETVAQIKAHVASLEGIAPEDQVVLLA------G---APLEDEATLGQCGVEAL 81 (93)
T ss_dssp -CEEEEES----SSEE----EEECCSSCBHHHHHHHHHHHHTCCGGGCEEEET------T---EECCTTSBHHHHTCCSS
T ss_pred cEEEEEEC----CCEE----EEEeCCCCcHHHHHHHHHHHhCcChhHEEEEEC------C---EECCCCCcHHHCCCCCC
Confidence 47788886 2333 356788999999999999999999987766663 2 23566789999999999
Q ss_pred CEEEEE
Q 003426 769 DIICFQ 774 (821)
Q Consensus 769 DIi~fQ 774 (821)
+.|..-
T Consensus 82 stI~lv 87 (93)
T 2l7r_A 82 TTLEVA 87 (93)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 988764
No 81
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=79.66 E-value=2.7 Score=33.71 Aligned_cols=57 Identities=12% Similarity=0.283 Sum_probs=45.7
Q ss_pred EEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEEEe
Q 003426 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQK 775 (821)
Q Consensus 710 ~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~ 775 (821)
+-++.+.+|.+|...|.+..|+|++..-.+|. + ..++...|+....+.+|+.|..-.
T Consensus 15 ~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~------g---~~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 1ndd_A 15 IDIEPTDKVERIKERVEEKEGIPPQQQRLIYS------G---KQMNDEKTAADYKILGGSVLHLVL 71 (76)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEECCCChHHHHHHHHHHHHCcChHHEEEEEC------C---EECCCCCcHHHcCCCCCCEEEEEE
Confidence 45788999999999999999999877655552 2 235667899999999999987654
No 82
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=79.23 E-value=7.9 Score=32.21 Aligned_cols=75 Identities=11% Similarity=0.123 Sum_probs=55.6
Q ss_pred CcEEEEEEeecCCCCeEEEeEEE-EEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccC
Q 003426 688 DDILLFFKLYDPEKGELRYVGRL-FLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (821)
Q Consensus 688 ~~~l~flK~fd~~~~~l~~~g~~-~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~ 766 (821)
..+-||+|..+-. +++ .+ -|+.+.+|.+|...|.+..|+|++..-.+|. + ..++...|+....|.
T Consensus 6 ~~m~i~Vk~~~g~-~~~----~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~------g---k~L~d~~tL~~~~i~ 71 (89)
T 1wy8_A 6 SGMWIQVRTIDGS-KTC----TIEDVSRKATIEELRERVWALFDVRPECQRLFYR------G---KQLENGYTLFDYDVG 71 (89)
T ss_dssp SCEEEEEEETTCS-CEE----EEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEET------T---EECCSSSBHHHHTCC
T ss_pred CcEEEEEEECCCC-ceE----EEEecCCCCCHHHHHHHHHHHHCcChhhEEEEEC------C---eECCCCCCHHHCCCC
Confidence 3477888875431 122 35 3889999999999999999999988766663 2 235667899999999
Q ss_pred CCCEEEEEeC
Q 003426 767 DGDIICFQKS 776 (821)
Q Consensus 767 ~GDIi~fQ~~ 776 (821)
+|+.|..-..
T Consensus 72 ~g~~i~l~~~ 81 (89)
T 1wy8_A 72 LNDIIQLLVR 81 (89)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEe
Confidence 9998876543
No 83
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=79.18 E-value=2.3 Score=34.71 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=29.8
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+.|..++|+.+|+++|++..|+|++++||..
T Consensus 17 ~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 49 (79)
T 3phx_B 17 STYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (79)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEECCcChHHHHHHHHHhhcCCCHHHEEEEE
Confidence 357888899999999999999999999999964
No 84
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=79.04 E-value=8.9 Score=30.91 Aligned_cols=72 Identities=14% Similarity=0.193 Sum_probs=52.0
Q ss_pred EEEEEEeecCCCCeEEEeEEEE-EecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCC
Q 003426 690 ILLFFKLYDPEKGELRYVGRLF-LKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDG 768 (821)
Q Consensus 690 ~l~flK~fd~~~~~l~~~g~~~-~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~G 768 (821)
+-||+|..+-. ++ -.+- |..+.+|.+|...|.+..|+|++..-.+|. + ..++...|+....+.+|
T Consensus 3 m~i~Vk~~~g~--~~---~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~------g---~~L~d~~tL~~~~i~~g 68 (78)
T 2faz_A 3 MWIQVRTMDGR--QT---HTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYR------G---KQMEDGHTLFDYEVRLN 68 (78)
T ss_dssp EEEEEEETTSS--CE---EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTCBTTTTTCCTT
T ss_pred EEEEEEECCCC--EE---EEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEEC------C---EECCCCCCHHHcCCCCC
Confidence 45666654322 21 1244 788999999999999999999987766652 2 23566789999999999
Q ss_pred CEEEEEe
Q 003426 769 DIICFQK 775 (821)
Q Consensus 769 DIi~fQ~ 775 (821)
+.|..-.
T Consensus 69 ~~i~l~~ 75 (78)
T 2faz_A 69 DTIQLLV 75 (78)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 9887643
No 85
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=79.03 E-value=2 Score=34.49 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=29.7
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+.+..++|+.+|++.|++..|+|++++||..
T Consensus 13 ~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 3a9j_A 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 356888899999999999999999999999965
No 86
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=78.97 E-value=13 Score=33.29 Aligned_cols=83 Identities=13% Similarity=-0.011 Sum_probs=59.5
Q ss_pred cEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCC
Q 003426 689 DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDG 768 (821)
Q Consensus 689 ~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~G 768 (821)
.|-|+++.= ... ..-.+-++.+.+|++|...|.++.|+|++..-.+|..- +...++...+...|+....|++|
T Consensus 6 ~v~l~V~~~---~~~--~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~--~~~~~~~l~~D~~tL~~y~i~~g 78 (122)
T 1t0y_A 6 VYDLEITTN---ATD--FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDG--DDQLKGELTDGAKSLKDLGVRDG 78 (122)
T ss_dssp EEEEEEEES---SCC--SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECS--SSSEEEECCCCSSBTTTTTCCSS
T ss_pred EEEEEEEEC---CCC--ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecC--CCccccccCCCcCCHHHCCCCCC
Confidence 466666652 111 23456788999999999999999999999987777542 12222123467889999999999
Q ss_pred CEEEEEeCCC
Q 003426 769 DIICFQKSPP 778 (821)
Q Consensus 769 DIi~fQ~~~~ 778 (821)
+.|..-...+
T Consensus 79 ~~ihvvd~~p 88 (122)
T 1t0y_A 79 YRIHAVDVTG 88 (122)
T ss_dssp EEEEEEECTT
T ss_pred CEEEEEeCCC
Confidence 9998876443
No 87
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=78.95 E-value=2.4 Score=36.86 Aligned_cols=33 Identities=12% Similarity=0.048 Sum_probs=29.9
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
.++.|..++|+.+|+++|++..|+|++++||..
T Consensus 41 i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~ 73 (100)
T 1uh6_A 41 VRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKK 73 (100)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEE
Confidence 357888899999999999999999999999964
No 88
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=78.91 E-value=4.3 Score=34.02 Aligned_cols=74 Identities=11% Similarity=0.241 Sum_probs=55.3
Q ss_pred CcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCC
Q 003426 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (821)
Q Consensus 688 ~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~ 767 (821)
..+-||+|..+-. ++ .+.|..+.+|.+|...|.++.|+|++..-.+|. + ..++...|+....| +
T Consensus 4 ~~m~i~Vk~~~g~--~~----~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~------G---k~L~d~~tL~~~~i-~ 67 (90)
T 4dwf_A 4 DSLEVLVKTLDSQ--TR----TFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ------G---RVLQDDKKLQEYNV-G 67 (90)
T ss_dssp CEEEEEEEETTCC--EE----EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTSBGGGGTC-T
T ss_pred cEEEEEEEcCCCC--EE----EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC------C---eECCCCCCHHHcCC-C
Confidence 3477888886543 22 246789999999999999999999988766662 2 23566789999999 8
Q ss_pred CCEEEEEeCC
Q 003426 768 GDIICFQKSP 777 (821)
Q Consensus 768 GDIi~fQ~~~ 777 (821)
|++|-.-...
T Consensus 68 g~~i~l~~~~ 77 (90)
T 4dwf_A 68 GKVIHLVERA 77 (90)
T ss_dssp TEEEEEEECC
T ss_pred CcEEEEEecC
Confidence 9988665544
No 89
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=78.87 E-value=2.4 Score=35.46 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=29.9
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
.++.|..++|+.+|+++|++..|+|++++||..
T Consensus 23 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 55 (84)
T 2kk8_A 23 FELEVDYRDTLLVVKQKIERSQHIPVSKQTLIV 55 (84)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 467888899999999999999999999999964
No 90
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=78.71 E-value=2.1 Score=35.00 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=30.2
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
.+++|..++|+.+|++.+++..|+|++++||..
T Consensus 16 ~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~ 48 (79)
T 2uyz_B 16 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 48 (79)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEECCCChHHHHHHHHHHHHCCCcccEEEEE
Confidence 467899999999999999999999999999954
No 91
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=78.56 E-value=6.9 Score=34.40 Aligned_cols=74 Identities=14% Similarity=0.234 Sum_probs=56.3
Q ss_pred CcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCC
Q 003426 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (821)
Q Consensus 688 ~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~ 767 (821)
..+-||+|..+- +++ .+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++...|+....+.+
T Consensus 34 ~~m~I~Vk~~~g--~~~----~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------G---k~L~D~~tL~~~gI~~ 98 (111)
T 2ojr_A 34 LAMQIFVKTLTG--KTI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQK 98 (111)
T ss_dssp SCEEEEEECSSS--CEE----EEEECTTCBHHHHHHHHHHHHCCCTTTEEEEET------T---EECCSSCBTTTTTCCT
T ss_pred CeEEEEEEcCCC--CEE----EEEeCCCCCHHHHHHHHHHHHCcCcccEEEEEC------C---EECCCCCcHHHcCCCC
Confidence 458899986542 232 356889999999999999999999987766662 2 1345678999999999
Q ss_pred CCEEEEEeC
Q 003426 768 GDIICFQKS 776 (821)
Q Consensus 768 GDIi~fQ~~ 776 (821)
|+.|-.-..
T Consensus 99 gs~I~l~~r 107 (111)
T 2ojr_A 99 ESTLHLVLR 107 (111)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEEe
Confidence 998876543
No 92
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=78.40 E-value=3.6 Score=34.32 Aligned_cols=71 Identities=8% Similarity=0.091 Sum_probs=53.2
Q ss_pred cEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccc-cCccCcccccccCC
Q 003426 689 DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEH-LDKRTSFRLSQIED 767 (821)
Q Consensus 689 ~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~-i~~~~t~~~~el~~ 767 (821)
.+-||+|...-.. . .+-|+.+.+|.+|...|.+..|+|++..-.+|. + .. ++...|+....|.+
T Consensus 10 ~~~i~vk~l~g~~--~----~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~------G---k~lL~D~~tL~~y~I~~ 74 (84)
T 2kk8_A 10 HMKFLVENLNGSS--F----ELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVD------G---IVILREDLTVEQCQIVP 74 (84)
T ss_dssp CEEEEEEETTSCE--E----EEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET------T---EECCCSSSBHHHHTCCT
T ss_pred ceEEEEEecCCcE--E----EEEECCCChHHHHHHHHHHHHCcChHHEEEEEC------C---EEecCCcCCHHHcCCCC
Confidence 3567777665432 2 245789999999999999999999987766653 2 13 56678999999999
Q ss_pred CCEEEEE
Q 003426 768 GDIICFQ 774 (821)
Q Consensus 768 GDIi~fQ 774 (821)
|+.|..-
T Consensus 75 gs~i~lv 81 (84)
T 2kk8_A 75 TSDIQLE 81 (84)
T ss_dssp TSCEEEE
T ss_pred CCEEEEE
Confidence 9988653
No 93
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=78.33 E-value=2.4 Score=35.46 Aligned_cols=33 Identities=39% Similarity=0.523 Sum_probs=29.8
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+.+..++|+.+|+++|++..|+|++++||..
T Consensus 30 ~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 62 (88)
T 4eew_A 30 RTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 62 (88)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 356888999999999999999999999999965
No 94
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=78.25 E-value=2.2 Score=37.13 Aligned_cols=32 Identities=13% Similarity=0.233 Sum_probs=29.4
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w 625 (821)
..+.|..+.|+.+|+++|++..|+|++++||-
T Consensus 32 ~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI 63 (100)
T 1wju_A 32 NLLETRLHITGRELRSKIAETFGLQENYIKIV 63 (100)
T ss_dssp EEEEEESSSBHHHHHHHHHHHTTCCSTTCEEE
T ss_pred EEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEE
Confidence 46788999999999999999999999999994
No 95
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=78.21 E-value=2.6 Score=35.04 Aligned_cols=32 Identities=16% Similarity=0.443 Sum_probs=29.3
Q ss_pred EEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
.+.|..++|+.+|+++|++..|+|++++||..
T Consensus 21 ~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~ 52 (87)
T 1wh3_A 21 AYAINPNSFILGLKQQIEDQQGLPKKQQQLEF 52 (87)
T ss_dssp EEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE
T ss_pred EEEeCCCChHHHHHHHHHHHhCCChHHEEEEE
Confidence 56888899999999999999999999999964
No 96
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=78.03 E-value=3.4 Score=34.57 Aligned_cols=62 Identities=18% Similarity=0.370 Sum_probs=46.0
Q ss_pred EecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEEEeCC
Q 003426 712 LKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSP 777 (821)
Q Consensus 712 ~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~~~ 777 (821)
+..+.+|.+|...|.+..|+|++..-.+|- |.|..+ +.-+...|+....|.+|+.|.+....
T Consensus 17 l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~---~p~k~l-~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 17 LSSRTRLRELQGQIAAITGIAPGSQRILVG---YPPECL-DLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp CCTTCBHHHHHHHHHHHTCCCTTTCCCEES---SCCCCC-CCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred cCCCCCHHHHHHHHHHHhCCCccceEEEeC---CCCccc-ccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 567899999999999999999776544442 223322 22236779999999999999998654
No 97
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=77.76 E-value=4.1 Score=35.56 Aligned_cols=77 Identities=18% Similarity=0.297 Sum_probs=58.5
Q ss_pred CCCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCccccccc
Q 003426 686 SKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI 765 (821)
Q Consensus 686 ~~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el 765 (821)
....+-||+|..+-. ++ .+-|..+.+|.+|...|.++.|+|++..-.+|. +. .++...|+....|
T Consensus 20 ~~~~m~I~Vk~~~g~--~~----~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------Gk---~L~D~~tL~~ygI 84 (106)
T 1ttn_A 20 SGYECQLRLRLSTGK--DL----KLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFS------GR---PLTDKMKFEELKI 84 (106)
T ss_dssp -CCSEEEEEEETTTE--EE----EEEECTTSHHHHHHHHHHHTTCCCSTTCEEEET------TE---ECCTTSHHHHCCC
T ss_pred CCCeEEEEEEcCCCC--EE----EEEeCCCCcHHHHHHHHHHHHCcCcccEEEEEC------CE---ECCCCCcHHHcCC
Confidence 345688999986532 22 256889999999999999999999988776662 32 3566789999999
Q ss_pred CCCCEEEEEeCC
Q 003426 766 EDGDIICFQKSP 777 (821)
Q Consensus 766 ~~GDIi~fQ~~~ 777 (821)
.+|+.|..-...
T Consensus 85 ~~g~ti~lv~~~ 96 (106)
T 1ttn_A 85 PKDYVVQVIVSQ 96 (106)
T ss_dssp SSSCEEEEECCC
T ss_pred CCCCEEEEEEeC
Confidence 999998776543
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=77.68 E-value=5.2 Score=39.31 Aligned_cols=76 Identities=20% Similarity=0.222 Sum_probs=55.9
Q ss_pred CCCCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccc
Q 003426 685 KSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQ 764 (821)
Q Consensus 685 ~~~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~e 764 (821)
++...|.|+++ + .... -++-|.++.+++.|+...+++.|+|.+.--.+|. + ..|....|....+
T Consensus 25 ~~~~~I~LkV~--~-~g~~----v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~Fd------G---~rI~~~~TP~dL~ 88 (200)
T 3pge_A 25 KPETHINLKVS--D-GSSE----IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD------G---IRIQADQTPEDLD 88 (200)
T ss_dssp CCCCCEEEEEE--C-SSCE----EEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEET------T---EECCTTCCTTTTT
T ss_pred CCCCeEEEEEe--c-CCCE----EEEEEecCCHHHHHHHHHHHHhCCChhhEEEEEC------C---EEcCCCCCHHHcC
Confidence 34677888887 3 3333 3678899999999999999999998755433442 1 3567788899999
Q ss_pred cCCCCEE-EEEeC
Q 003426 765 IEDGDII-CFQKS 776 (821)
Q Consensus 765 l~~GDIi-~fQ~~ 776 (821)
+.|||+| +|+..
T Consensus 89 MEdgD~Idv~~~q 101 (200)
T 3pge_A 89 MEDNDIIEAHREQ 101 (200)
T ss_dssp CCTTEEEEEEECC
T ss_pred CCCCCEEEEEecc
Confidence 9999955 55543
No 99
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=77.63 E-value=5 Score=40.03 Aligned_cols=68 Identities=24% Similarity=0.291 Sum_probs=48.5
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCC-ceEEEEEeecCCCCCCCCCCCCCcchhchHHHHHhhhccccccceeEEEEe
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQ-LQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEV 671 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~-~~r~w~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 671 (821)
..+..+.|..|+.+|++.+.+.|+++.+ .+|||.+....+. ..| .+.+.||+++.- ..+-.|.+|+
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~-----~~L--~~~~~tl~~~~l------~~~Q~illE~ 207 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTF-----EPL--NKPDSTIQDAGL------YQGQVLVIEQ 207 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEE-----EEC--CCTTSBHHHHTC------CTTCEEEEEE
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCe-----eec--CCCCCCHHHhCC------CCCCEEEEEE
Confidence 3467889999999999999999999997 6999998653322 122 224568877632 1235688997
Q ss_pred ec
Q 003426 672 EF 673 (821)
Q Consensus 672 ~~ 673 (821)
..
T Consensus 208 r~ 209 (217)
T 4a3p_A 208 KN 209 (217)
T ss_dssp CC
T ss_pred ec
Confidence 63
No 100
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=77.24 E-value=2.7 Score=33.92 Aligned_cols=33 Identities=33% Similarity=0.522 Sum_probs=29.6
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+.+..+.|+.+|+++|++..|+|++++||..
T Consensus 16 ~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 48 (77)
T 2bwf_A 16 WEVNVAPESTVLQFKEAINKANGIPVANQRLIY 48 (77)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEE
Confidence 356888899999999999999999999999963
No 101
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=77.17 E-value=2.8 Score=35.20 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=29.7
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+.|..++|+.+|+++|++..|+|++++||..
T Consensus 17 ~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 49 (88)
T 2hj8_A 17 STYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (88)
T ss_dssp EEEEEESSSBHHHHHHHHHHHTCSCTTTEEEES
T ss_pred EEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 357888899999999999999999999999963
No 102
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=77.13 E-value=2.5 Score=33.93 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=29.5
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+.+..++|+.+|++.|++..|+|++++||..
T Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 1ndd_A 13 IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (76)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 356888899999999999999999999999864
No 103
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=76.77 E-value=2.4 Score=35.60 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=29.9
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+.+..++|+.+|+++|++..|+|++++||..
T Consensus 22 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 54 (88)
T 1sif_A 22 FTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF 54 (88)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChhhEEEEE
Confidence 457888899999999999999999999999964
No 104
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=76.57 E-value=3.1 Score=34.96 Aligned_cols=33 Identities=39% Similarity=0.523 Sum_probs=29.9
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+.|..++|+.+|+++|++..|++++++||..
T Consensus 18 ~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 50 (90)
T 4dwf_A 18 RTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 50 (90)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 357888999999999999999999999999964
No 105
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=76.54 E-value=2.3 Score=35.46 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=29.9
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+.|..++|+.+|+++|++..|+|++++||..
T Consensus 25 ~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 57 (88)
T 3dbh_I 25 IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 57 (88)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE
Confidence 367888899999999999999999999999865
No 106
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=76.54 E-value=8.1 Score=32.87 Aligned_cols=81 Identities=11% Similarity=0.010 Sum_probs=57.9
Q ss_pred cEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCC
Q 003426 689 DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDG 768 (821)
Q Consensus 689 ~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~G 768 (821)
++-|+++.=.. . ..-.+-+..+.+|.+|...|.++.|+|++..-.+|..- +...+++..+...++....|++|
T Consensus 7 ~v~l~I~~~~~--~---~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~--~g~~~~~l~~D~~tL~~y~i~~g 79 (95)
T 1v6e_A 7 GVMVFISSSLN--S---FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGA--DDKFYSKLDQEDALLGSYPVDDG 79 (95)
T ss_dssp CEEEEEEETTS--S---SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECS--SSCEEEECCCSSSBTTSSSCCTT
T ss_pred EEEEEEEECCC--C---eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCC--CCccccccCCCcCCHhHCCCCCC
Confidence 36677776211 1 23456788999999999999999999999887777542 11112123567889999999999
Q ss_pred CEEEEEeC
Q 003426 769 DIICFQKS 776 (821)
Q Consensus 769 DIi~fQ~~ 776 (821)
+.|..-..
T Consensus 80 ~~l~v~d~ 87 (95)
T 1v6e_A 80 CRIHVIDH 87 (95)
T ss_dssp CEEEEBCC
T ss_pred CEEEEEEC
Confidence 99887653
No 107
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.42 E-value=3 Score=34.01 Aligned_cols=32 Identities=19% Similarity=0.466 Sum_probs=29.2
Q ss_pred EEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
.+.+..++|+.+|+++|++..|++++++||..
T Consensus 21 ~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 52 (81)
T 2dzi_A 21 SLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF 52 (81)
T ss_dssp EEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 56888899999999999999999999999854
No 108
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=76.40 E-value=2.4 Score=35.68 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=29.6
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+.|..++|+.+|+++|++..|+|++++||..
T Consensus 13 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 45 (88)
T 4fbj_B 13 IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (88)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChhHEEEEE
Confidence 356888899999999999999999999999964
No 109
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=76.35 E-value=8.6 Score=31.57 Aligned_cols=72 Identities=10% Similarity=0.201 Sum_probs=54.0
Q ss_pred EEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHH---cCCCCCCcEEEEEeeccCccccccccCccCcccccccC
Q 003426 690 ILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQM---AGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (821)
Q Consensus 690 ~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~---~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~ 766 (821)
+-||+|..+-. ++ .+-|..+.+|.+|...|.+. .|+|++..-.+|. +. .++...|+....|.
T Consensus 6 m~i~vk~~~g~--~~----~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~------Gk---~L~D~~tL~~~~i~ 70 (85)
T 2wyq_A 6 VTITLKTLQQQ--TF----KIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA------GK---ILSDDVPIRDYRID 70 (85)
T ss_dssp EEEEEEETTSC--EE----EEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET------TE---ECCTTSBGGGGCCC
T ss_pred EEEEEEECCCC--EE----EEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC------CE---ECcCCCCHHHcCCC
Confidence 66777765432 22 35678999999999999997 7899877766653 22 35567899999999
Q ss_pred CCCEEEEEeC
Q 003426 767 DGDIICFQKS 776 (821)
Q Consensus 767 ~GDIi~fQ~~ 776 (821)
+|+.|.+-..
T Consensus 71 ~g~~i~l~~~ 80 (85)
T 2wyq_A 71 EKNFVVVMVT 80 (85)
T ss_dssp TTSEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999987654
No 110
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=76.32 E-value=3.4 Score=36.11 Aligned_cols=72 Identities=25% Similarity=0.308 Sum_probs=53.3
Q ss_pred EEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCE
Q 003426 691 LLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDI 770 (821)
Q Consensus 691 l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDI 770 (821)
-||+|..+-. ++ .+.|..+.+|.+|...|.+..|+|++..-.+|. +. .++...++....|.+|+.
T Consensus 3 ~I~Vk~~~g~--~~----~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~------Gk---~L~D~~tL~~~~i~~g~~ 67 (106)
T 3m62_B 3 SLTFKNFKKE--KV----PLDLEPSNTILETKTKLAQSISCEESQIKLIYS------GK---VLQDSKTVSECGLKDGDQ 67 (106)
T ss_dssp CEEEECTTCC--EE----EECCCTTSBHHHHHHHHHHTTTSCGGGCEEEET------TE---ECCTTSBTTTTTCCTTCE
T ss_pred EEEEEeCCCC--EE----EEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC------CE---ECCCcCCHHHcCCCCCCE
Confidence 4666755433 22 245788999999999999999999887766652 22 356678999999999998
Q ss_pred EEEEeCC
Q 003426 771 ICFQKSP 777 (821)
Q Consensus 771 i~fQ~~~ 777 (821)
|..-...
T Consensus 68 i~lv~~~ 74 (106)
T 3m62_B 68 VVFMVSQ 74 (106)
T ss_dssp EEEECCC
T ss_pred EEEEEcC
Confidence 8876543
No 111
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=76.29 E-value=2.6 Score=35.57 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=29.9
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+.|..++|+.+|+++|++..|++++++||..
T Consensus 30 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 62 (91)
T 3v6c_B 30 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 62 (91)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE
Confidence 356888899999999999999999999999975
No 112
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=76.17 E-value=5.1 Score=33.39 Aligned_cols=56 Identities=11% Similarity=0.239 Sum_probs=45.3
Q ss_pred EEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEEE
Q 003426 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQ 774 (821)
Q Consensus 710 ~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ 774 (821)
+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++...++....|.+|+.|..-
T Consensus 26 l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~------G---k~L~D~~tL~~~gi~~g~~l~l~ 81 (85)
T 2kd0_A 26 LSVSPDCTVKDLKSQLQPITNVLPRGQKLIFK------G---KVLVETSTLKQSDVGSGAKLMLM 81 (85)
T ss_dssp EEECTTSBHHHHHHHHHHHHCCCTTTCEEEET------T---EECCTTCBTTTTTCCTTEEEEEE
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHEEEEEC------C---eECCCcCCHHHCCCCCCCEEEEE
Confidence 45788999999999999999999987766652 2 23566789999999999988764
No 113
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=76.16 E-value=3 Score=35.63 Aligned_cols=33 Identities=15% Similarity=0.284 Sum_probs=29.8
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
.++.|..++|+.+|+++|++..|+|++++||..
T Consensus 27 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 59 (94)
T 2kan_A 27 FTVEVDRTETVSSLKDKIHIVENTPIKRMQLYY 59 (94)
T ss_dssp EEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 457888899999999999999999999999963
No 114
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=76.10 E-value=2.8 Score=34.97 Aligned_cols=36 Identities=6% Similarity=0.207 Sum_probs=31.7
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEEEEEe
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWA 628 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~~~ 628 (821)
...+||++..++.+|++.|++.|+++++.+.|+.-.
T Consensus 15 tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 15 TVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 346799999999999999999999999999887644
No 115
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=76.05 E-value=3.1 Score=37.48 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=31.3
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIW 627 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~~ 627 (821)
..+++..++|+.+|+++|++..|+|++++||...
T Consensus 20 ~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~ 53 (122)
T 1t0y_A 20 MEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLF 53 (122)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEe
Confidence 4679999999999999999999999999999764
No 116
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=75.95 E-value=4.7 Score=34.22 Aligned_cols=72 Identities=14% Similarity=0.248 Sum_probs=53.6
Q ss_pred EEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCE
Q 003426 691 LLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDI 770 (821)
Q Consensus 691 l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDI 770 (821)
-||+|..+-. ++ .+.|..+.+|.+|...|.+..|+|++..-.+|. + ..++...|+....|.+|+.
T Consensus 3 ~i~vk~~~g~--~~----~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~------G---~~L~d~~tL~~~~i~~~~~ 67 (96)
T 3k9o_B 3 QIFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQKEST 67 (96)
T ss_dssp EEEEEETTCC--EE----EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTSBTGGGTCCTTCE
T ss_pred EEEEEeCCCC--EE----EEEECCCCCHHHHHHHHHhhhCCChhHEEEEEC------C---EECCCCCcHHHcCCCCCCE
Confidence 4677766432 22 246788999999999999999999977665552 2 2356678999999999998
Q ss_pred EEEEeCC
Q 003426 771 ICFQKSP 777 (821)
Q Consensus 771 i~fQ~~~ 777 (821)
|-.-...
T Consensus 68 i~l~~r~ 74 (96)
T 3k9o_B 68 LHLVLRL 74 (96)
T ss_dssp EEEEECC
T ss_pred EEEEEEc
Confidence 8776543
No 117
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=75.88 E-value=3.1 Score=33.78 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=29.2
Q ss_pred EEE-eeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 595 SFR-VQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 595 ~~~-v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
++. +..++|+.+|+++|++..|+|++++||..
T Consensus 17 ~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~ 49 (78)
T 2faz_A 17 TVDSLSRLTKVEELRRKIQELFHVEPGLQRLFY 49 (78)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEeccCCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 567 88899999999999999999999999964
No 118
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=75.87 E-value=2.6 Score=35.24 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=29.1
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w 625 (821)
..+.+..++|+.+|+++|++..|+|++++||.
T Consensus 24 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~ 55 (85)
T 2kd0_A 24 IPLSVSPDCTVKDLKSQLQPITNVLPRGQKLI 55 (85)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHCCCTTTCEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChHHEEEE
Confidence 35688889999999999999999999999995
No 119
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=75.85 E-value=3.8 Score=34.38 Aligned_cols=57 Identities=12% Similarity=0.230 Sum_probs=45.5
Q ss_pred EEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEEEe
Q 003426 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQK 775 (821)
Q Consensus 710 ~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~ 775 (821)
+-|+.+.+|++|...|.+..|+|++..-.+|. +. .++...|+....+.+|+.|..-.
T Consensus 24 l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~------Gk---~L~D~~tL~~~gi~~g~~i~l~~ 80 (88)
T 1sif_A 24 VEMEPSDTIENLKAKIQDKEGIPPDQQRLIFA------GK---QLEDGRTLSDYNIQKESTLHLVL 80 (88)
T ss_dssp EECCTTSBHHHHHHHHHHHHCCCGGGCEEEET------TE---ECCTTSBSGGGTCCTTCEEEEEC
T ss_pred EEECCCChHHHHHHHHHHHHCcChhhEEEEEC------CE---ECCCCCcHHHcCCCCCCEEEEEE
Confidence 45778899999999999999999987766663 22 34567899999999999887643
No 120
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=75.74 E-value=5.6 Score=33.11 Aligned_cols=69 Identities=12% Similarity=0.250 Sum_probs=52.1
Q ss_pred CcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCC
Q 003426 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (821)
Q Consensus 688 ~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~ 767 (821)
..+-||+|..+-. ++ .+.|..+.+|.+|...|.+..|+|++..-.+|. + ..++...++....| +
T Consensus 16 ~~m~i~Vk~~~g~--~~----~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~------G---k~L~D~~tL~~~~i-~ 79 (88)
T 4eew_A 16 DSLEVLVKTLDSQ--TR----TFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ------G---RVLQDDKKLQEYNV-G 79 (88)
T ss_dssp CEEEEEEEETTSC--EE----EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTSBGGGGTC-T
T ss_pred CeEEEEEEcCCCC--EE----EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC------C---EECCCCCcHHHcCC-C
Confidence 4578888875433 22 246789999999999999999999988766652 2 23566789999999 8
Q ss_pred CCEEE
Q 003426 768 GDIIC 772 (821)
Q Consensus 768 GDIi~ 772 (821)
|+.|-
T Consensus 80 g~~i~ 84 (88)
T 4eew_A 80 GKVIH 84 (88)
T ss_dssp TEEEE
T ss_pred CcEEE
Confidence 98874
No 121
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=75.32 E-value=1 Score=40.90 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=28.2
Q ss_pred ccccccCCCcccchhhHHHHhhcc-HhHHHHHhcCC
Q 003426 195 GYVGLKNQGATCYMNSLLQTLYHI-PYFRKAVYHMP 229 (821)
Q Consensus 195 g~~GL~N~GnTCYlNS~LQ~L~~~-p~fr~~l~~~~ 229 (821)
.+.|+.|.-++||+|++||+.... .+|-+.+|..|
T Consensus 12 ~fys~pN~hdncWLNtilQLfryvdepfFd~~y~sp 47 (167)
T 1qmy_A 12 TFYSRPNNHDNAWLNAILQLFRYVEEPFFDWVYSSP 47 (167)
T ss_dssp ECCCCCCSSSCHHHHHHHHHHHHHTCCTTHHHHTCS
T ss_pred ccccCCCCCcchHHHHHHHHHHHcCccchhhccCCh
Confidence 367899999999999999998664 46777777644
No 122
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=75.30 E-value=2.8 Score=36.36 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=30.3
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..++.|..++|+.+|+++|++..|++++++||..
T Consensus 23 ~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 56 (102)
T 1v5o_A 23 TFSLQVNPDFELSNFRVLCELESGVPAEEAQIVY 56 (102)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEE
Confidence 3357888899999999999999999999999964
No 123
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=74.84 E-value=2.9 Score=35.57 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=29.8
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+.|..++|+.+|++.|++..|++++++||..
T Consensus 14 ~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~ 46 (96)
T 3k9o_B 14 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 46 (96)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHhhhCCChhHEEEEE
Confidence 356888899999999999999999999999975
No 124
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=74.50 E-value=2.8 Score=36.01 Aligned_cols=36 Identities=6% Similarity=0.074 Sum_probs=32.3
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEEEEEe
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWA 628 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~~~ 628 (821)
....++++++|+.+|+.+|++.+|+|+..+||....
T Consensus 24 ~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~ 59 (97)
T 1wjn_A 24 ILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYES 59 (97)
T ss_dssp CEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEc
Confidence 346799999999999999999999999999998754
No 125
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=74.27 E-value=2.9 Score=35.63 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=29.2
Q ss_pred EEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
.+.|..++|+.+|+++|++..|+|++++||..
T Consensus 31 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 62 (93)
T 2l7r_A 31 TFEVTGQETVAQIKAHVASLEGIAPEDQVVLL 62 (93)
T ss_dssp EEECCSSCBHHHHHHHHHHHHTCCGGGCEEEE
T ss_pred EEEeCCCCcHHHHHHHHHHHhCcChhHEEEEE
Confidence 56788899999999999999999999999964
No 126
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=73.97 E-value=2.9 Score=35.93 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=29.6
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+.|..++|+.+|+++|++..|+|++++||..
T Consensus 35 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 67 (98)
T 4hcn_B 35 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 67 (98)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 356888899999999999999999999999964
No 127
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=73.56 E-value=3.7 Score=36.24 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=30.1
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..++|..++|+.+|+++|++..|+|++++||..
T Consensus 48 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 80 (111)
T 3vdz_A 48 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEE
Confidence 367888999999999999999999999999974
No 128
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=73.38 E-value=3.4 Score=34.26 Aligned_cols=64 Identities=19% Similarity=0.291 Sum_probs=43.7
Q ss_pred EeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCc-cccccccCccCcccccccCCCCEEEEE
Q 003426 706 YVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEP-CVMCEHLDKRTSFRLSQIEDGDIICFQ 774 (821)
Q Consensus 706 ~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p-~~i~e~i~~~~t~~~~el~~GDIi~fQ 774 (821)
|.-.+-+..+.++.+|...|.+.+++|.+.. .+|=.- .| +-+ ......++....|.+||.|...
T Consensus 14 G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~-~l~~~~--~p~~~l--~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 14 GVKRITATKRETAATFLKKVAKEFGFQNNGF-SVYINR--NKTGEI--TASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHTCCCTTTC-CCCCSC--CGGGGS--SSCCCCTTTTTCCCTTCCEEC-
T ss_pred CCEEEEcCCcChHHHHHHHHHHHcCCCCCcc-eEEecC--CCCCcc--cCCCCCCHHHcCCCCCCEEEEe
Confidence 3444455788999999999999999986442 223233 44 211 1226778999999999999864
No 129
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=73.08 E-value=11 Score=32.40 Aligned_cols=75 Identities=13% Similarity=0.062 Sum_probs=55.7
Q ss_pred CcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHH-HHHcCCCCCCcEEEEEeeccCccccccccCccCccccccc-
Q 003426 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKL-NQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI- 765 (821)
Q Consensus 688 ~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i-~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el- 765 (821)
..+-||+|.....+ +.-.+-|..+.+|.+|...| .+.-|+|++..-.+|. + ..++...|+....|
T Consensus 18 ~~m~I~VKtl~g~~----~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~------G---k~L~D~~tL~dy~I~ 84 (98)
T 4a20_A 18 AAVHLTLKKIQAPK----FSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK------G---KVLHDNLFLSDLKVT 84 (98)
T ss_dssp CCEEEEEEECSSSC----EEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEET------T---EEECTTCBGGGSCCB
T ss_pred CCEEEEEEcCCCCE----EEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEEC------C---EECcCcCCHHHcCcC
Confidence 34778888766552 22334567999999999999 8888999987766652 3 23567789999999
Q ss_pred CCCCEEEEEe
Q 003426 766 EDGDIICFQK 775 (821)
Q Consensus 766 ~~GDIi~fQ~ 775 (821)
++|+.|..=.
T Consensus 85 ~~g~ti~lmv 94 (98)
T 4a20_A 85 PANSTITVMI 94 (98)
T ss_dssp TTBCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 9999887643
No 130
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=73.04 E-value=5.1 Score=34.25 Aligned_cols=59 Identities=14% Similarity=0.233 Sum_probs=46.9
Q ss_pred EEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEEEeCC
Q 003426 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSP 777 (821)
Q Consensus 710 ~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~~~ 777 (821)
+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++...|+....|.+|+.|..-...
T Consensus 15 ~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~------G---k~L~D~~tL~~~gi~~g~~i~l~~~~ 73 (98)
T 1yx5_B 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQKESTLHLVLRL 73 (98)
T ss_dssp EECCTTCBHHHHHHHHHHHTCCCGGGEEEEET------T---EECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChhhEEEEEC------C---EECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 55788999999999999999999877666652 2 13456789999999999998766544
No 131
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=72.94 E-value=5.6 Score=34.77 Aligned_cols=79 Identities=8% Similarity=0.089 Sum_probs=53.1
Q ss_pred EEEEEEeecCCCCeEEEeEEEEEe-cCCChHHHHHHHHHHcCCCCCCcEEEEEee----ccCccc---cccccCccCccc
Q 003426 690 ILLFFKLYDPEKGELRYVGRLFLK-SSSKPIEILRKLNQMAGFDPDEEIELYEEI----KFEPCV---MCEHLDKRTSFR 761 (821)
Q Consensus 690 ~l~flK~fd~~~~~l~~~g~~~~~-~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi----k~~p~~---i~e~i~~~~t~~ 761 (821)
++|++|-= . |.-.+-|. .+.+|.+|...|.+..|+|++..-..|.-- | .|.. +....+...|+.
T Consensus 8 M~irvrs~--~-----G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k-~~~~~~~l~~~l~d~~tL~ 79 (107)
T 1wf9_A 8 TMLRVRSR--D-----GLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAK-SPSDFLAFTDMADPNLRIS 79 (107)
T ss_dssp EEEEEECS--S-----CEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCC-SHHHHTTCCSSCCTTCBGG
T ss_pred EEEEEECC--C-----CCEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCcccccc-CccccccccccCCCCCCHH
Confidence 67777732 2 22234577 889999999999999999987764322211 0 0111 111257788999
Q ss_pred ccccCCCCEEEEEeC
Q 003426 762 LSQIEDGDIICFQKS 776 (821)
Q Consensus 762 ~~el~~GDIi~fQ~~ 776 (821)
...|++||.|.+-..
T Consensus 80 ~~gi~~G~~L~l~~~ 94 (107)
T 1wf9_A 80 SLNLAHGSMVYLAYE 94 (107)
T ss_dssp GTCCCTTCEEECCCS
T ss_pred HCCCCCCCEEEEEeC
Confidence 999999999987654
No 132
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=72.85 E-value=4 Score=35.30 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=29.3
Q ss_pred EEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
.+.|..++|+.+|+++|++..|+|++++||..
T Consensus 35 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 66 (100)
T 1yqb_A 35 DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF 66 (100)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 56888899999999999999999999999964
No 133
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=72.74 E-value=3.5 Score=35.36 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=30.2
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
.+++|..++|+.+|++.|++..|+|++++||..
T Consensus 34 ~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif 66 (97)
T 1wyw_B 34 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 66 (97)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE
Confidence 467899999999999999999999999999865
No 134
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=72.40 E-value=5.6 Score=35.26 Aligned_cols=60 Identities=15% Similarity=0.205 Sum_probs=47.5
Q ss_pred EEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEEEeCCC
Q 003426 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSPP 778 (821)
Q Consensus 710 ~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~~~~ 778 (821)
+-|..+.+|.+|...|.+..|+|++..-.+|. +. .++...|+....|.+|+.|..-....
T Consensus 24 l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------Gk---~L~D~~tL~~ygI~~gstI~l~~~~~ 83 (114)
T 2kdi_A 24 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIWA------GK---QLEDGRTLSDYNIQRESTLHLVLRLR 83 (114)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGEEEEET------TE---ECCTTCBTTTTTCCSSCEEEEEECCC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHEEEEEC------CE---ECCCCCcHHHCCCCCCCEEEEEEEcC
Confidence 45678899999999999999999987766653 21 35567899999999999987765543
No 135
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=72.39 E-value=6.5 Score=37.43 Aligned_cols=76 Identities=13% Similarity=0.255 Sum_probs=56.3
Q ss_pred CCCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCccccccc
Q 003426 686 SKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI 765 (821)
Q Consensus 686 ~~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el 765 (821)
....+-||+|.++-. ++ .+.|..+.+|.+|...|.+..|+|++..-.+|. + ..++...|+....|
T Consensus 17 ~~~~m~i~Vk~~~g~--~~----~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~------g---~~L~d~~tL~~~~i 81 (172)
T 3u30_A 17 RGSHMQIFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNI 81 (172)
T ss_dssp --CCEEEEEEETTTE--EE----EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTCBTGGGTC
T ss_pred CCCcEEEEEEeCCCC--EE----EEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC------C---ccccccCCHhHcCC
Confidence 445689999986533 22 356889999999999999999999987766653 2 23566788888889
Q ss_pred CCCCEEEEEeC
Q 003426 766 EDGDIICFQKS 776 (821)
Q Consensus 766 ~~GDIi~fQ~~ 776 (821)
.+|+.|..-..
T Consensus 82 ~~~~~l~l~~~ 92 (172)
T 3u30_A 82 QKESTLHLVLR 92 (172)
T ss_dssp CTTCEEEEEEC
T ss_pred cccceeeeeec
Confidence 99888766543
No 136
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=72.39 E-value=4.2 Score=36.37 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=29.3
Q ss_pred EEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
++.+..+.|+.+|+++|++..|+|++++||+.
T Consensus 15 ~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~ 46 (118)
T 4ajy_B 15 FTDAKESSTVFELKRIVEGILKRPPDEQRLYK 46 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEcCCCChHHHHHHHHHHHHCCCHHHeEEEe
Confidence 45788899999999999999999999999984
No 137
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=72.39 E-value=8.1 Score=33.99 Aligned_cols=73 Identities=14% Similarity=0.248 Sum_probs=55.8
Q ss_pred CcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCC
Q 003426 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (821)
Q Consensus 688 ~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~ 767 (821)
..+-||+|..+-. ++ .+.|..+.+|.+|...|.++.|+|++..-.+|. + ..++...|+....|.+
T Consensus 34 ~~m~I~Vk~~~G~--~~----~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~------G---k~L~D~~tL~~~gI~~ 98 (111)
T 3vdz_A 34 LAMQIFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQK 98 (111)
T ss_dssp GCEEEEEECSSSC--EE----EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTSBTTTTTCCT
T ss_pred ccEEEEEEeCCCC--EE----EEEeCCCCCHHHHHHHHHHHhCCChHHEEEEEC------C---EECCCCCcHHHCCCCC
Confidence 3588999987543 32 356889999999999999999999977665552 2 2356677999999999
Q ss_pred CCEEEEEe
Q 003426 768 GDIICFQK 775 (821)
Q Consensus 768 GDIi~fQ~ 775 (821)
|+.|-.-.
T Consensus 99 gs~I~l~~ 106 (111)
T 3vdz_A 99 ESTLHLVL 106 (111)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEE
Confidence 99886643
No 138
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=71.86 E-value=6.3 Score=32.75 Aligned_cols=59 Identities=12% Similarity=0.063 Sum_probs=44.5
Q ss_pred EEEecCCChHHHHHHHHHHcCCCCCCcEE-EEEeeccCccccccccCccCcccccccCCCCEEEE
Q 003426 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIE-LYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICF 773 (821)
Q Consensus 710 ~~~~~~~~v~~l~~~i~~~~g~p~~t~l~-lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~f 773 (821)
+.|+..-+++.|+..+.+..+++.. +.. .+=.+. .++ -.+..+.+++...+.|||+|..
T Consensus 21 LRIP~~~tvK~Li~~l~ea~~l~~~-~~~~~~irv~-NK~---~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 21 LRLSDYHPVKKVIDIAWQAQSVSMP-PREGHWIRVV-NKD---KVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEETTSBTTHHHHHHHHHSCCCSC-CCTTCEEEEG-GGT---EEEETTSBTGGGTCCTTCEEEE
T ss_pred EECCCchhHHHHHHHHHHHhCCCcC-CCCCCEEEEe-cCC---EEEcCCCEEeeCCcCCCCEEEE
Confidence 5688999999999999999999852 223 444443 223 2477888999999999999863
No 139
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=71.83 E-value=4.7 Score=33.67 Aligned_cols=33 Identities=15% Similarity=0.336 Sum_probs=29.3
Q ss_pred eEE-EeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSF-RVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~-~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
.++ .|..++|+.+|+++|++..|+|++++||..
T Consensus 21 ~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 54 (89)
T 1wy8_A 21 CTIEDVSRKATIEELRERVWALFDVRPECQRLFY 54 (89)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEE
T ss_pred EEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 356 488899999999999999999999999965
No 140
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=71.59 E-value=2.6 Score=36.06 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=28.5
Q ss_pred EEEeeccccHHHHHHHHHHHhCCCCCceEEE
Q 003426 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w 625 (821)
.+.|..++|+.+|+++|++..|+|++++||.
T Consensus 30 ~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~ 60 (95)
T 1v86_A 30 DVKVPLDSTGSELKQKIHSITGLPPAMQKVM 60 (95)
T ss_dssp EEEECTTSBHHHHHHHHHHHHCSCSTTCCCB
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHeEEE
Confidence 4678889999999999999999999999985
No 141
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=71.58 E-value=4.5 Score=33.30 Aligned_cols=34 Identities=6% Similarity=0.225 Sum_probs=31.2
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
...++|.+++++..|.+..++..|++++.+||+.
T Consensus 20 ~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f 53 (79)
T 3a4r_A 20 MLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF 53 (79)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE
Confidence 3478999999999999999999999999999975
No 142
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=70.64 E-value=25 Score=29.36 Aligned_cols=75 Identities=9% Similarity=0.115 Sum_probs=54.5
Q ss_pred CcEEEEEEeecCCCCeEEEeEEEEEecC-----CChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccc
Q 003426 688 DDILLFFKLYDPEKGELRYVGRLFLKSS-----SKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRL 762 (821)
Q Consensus 688 ~~~l~flK~fd~~~~~l~~~g~~~~~~~-----~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~ 762 (821)
..+-|++|. . .++. .+-+..+ .+|.+|...|.+..|+|++..-.+|. +.+ .-|...++..
T Consensus 6 ~~~~v~Vk~-~--~~~~----~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~------Gk~--L~D~~~~L~~ 70 (92)
T 1wxv_A 6 SGLTVTVTH-S--NEKH----DLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFK------GKS--LKEMETPLSA 70 (92)
T ss_dssp SSEEEEEEC-S--SSEE----EEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEET------TEE--ECCSSSBHHH
T ss_pred CeEEEEEEE-C--CEEE----EEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEEC------Cee--cCCCcccHHH
Confidence 347788887 2 3333 4567774 99999999999999999988766653 211 2233668999
Q ss_pred cccCCCCEEEEEeCC
Q 003426 763 SQIEDGDIICFQKSP 777 (821)
Q Consensus 763 ~el~~GDIi~fQ~~~ 777 (821)
..|.+|+.|..-...
T Consensus 71 ~~i~~g~~i~l~~~~ 85 (92)
T 1wxv_A 71 LGIQDGCRVMLIGKK 85 (92)
T ss_dssp HTCCSSEEEEEESCC
T ss_pred CCCCCCCEEEEEecC
Confidence 999999998886543
No 143
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=70.39 E-value=4.3 Score=34.73 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=29.5
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+.|..++|+.+|+++|++..|+|++++||..
T Consensus 13 ~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~ 45 (98)
T 1yx5_B 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (98)
T ss_dssp EEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 356788899999999999999999999999964
No 144
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.30 E-value=4.1 Score=35.35 Aligned_cols=31 Identities=13% Similarity=0.230 Sum_probs=28.6
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRF 624 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~ 624 (821)
..+.|..++|+.+|+++|.+..|+|++++||
T Consensus 21 ~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkL 51 (100)
T 2dzm_A 21 VDVVLEDTCTVGEIKQILENELQIPVSKMLL 51 (100)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHCCCTTTCCE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCChhHeEE
Confidence 3578888999999999999999999999998
No 145
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=70.30 E-value=4.6 Score=34.95 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=29.6
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+.|..++|+.+|+++|++..|+|++++||..
T Consensus 37 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 69 (101)
T 2klc_A 37 EEFAVPENSSVQQFKEEISKRFKSHTDQLVLIF 69 (101)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 356888899999999999999999999999954
No 146
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=70.29 E-value=3.7 Score=34.95 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=29.2
Q ss_pred EEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
.++|..++|+.+|+++|++..|++++++||..
T Consensus 30 ~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 61 (96)
T 1wx8_A 30 EFFLAENSNVRRFKKQISKYLHCNADRLVLIF 61 (96)
T ss_dssp EEEEETTCCHHHHHHHHHHHTCSCTTTBCCEE
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 56888899999999999999999999999864
No 147
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=70.12 E-value=3.2 Score=35.10 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=27.7
Q ss_pred EE-EeeccccHHHHHHHHHHHhCCCCCceEEE
Q 003426 595 SF-RVQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (821)
Q Consensus 595 ~~-~v~k~~~~~~~~~~v~~~~~~~~~~~r~w 625 (821)
.+ .|..++|+.+|+++|++..|+|++++||.
T Consensus 20 ~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi 51 (90)
T 1v5t_A 20 SVTTLSEDDTVLDLKQFLKTLTGVLPERQKLL 51 (90)
T ss_dssp EECSCCSSSBHHHHHHHHHHHTCCCTTTCEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEE
Confidence 35 56778999999999999999999999996
No 148
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=69.34 E-value=5.5 Score=34.65 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=29.0
Q ss_pred EEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
.+.|..++|+.+|+++|++..|++++++||..
T Consensus 30 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 61 (106)
T 1wx7_A 30 DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF 61 (106)
T ss_dssp EEEEETTCCHHHHHHHHHHHHTCCTTTEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 56888899999999999999999999999954
No 149
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=69.06 E-value=12 Score=33.81 Aligned_cols=69 Identities=17% Similarity=0.301 Sum_probs=47.9
Q ss_pred eEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEee------------------ccCccccc------------cccCc
Q 003426 707 VGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEI------------------KFEPCVMC------------EHLDK 756 (821)
Q Consensus 707 ~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi------------------k~~p~~i~------------e~i~~ 756 (821)
+-.+.|+.+.+|.+++..||+.+|++..++..|--+- .++|..+. ..+++
T Consensus 23 ~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~dd~~~WLD~ 102 (128)
T 2kc2_A 23 VKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHTDDELNWLDH 102 (128)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCCSSSEEEECS
T ss_pred EEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcccCCCCcccC
Confidence 3467789999999999999999999976553332111 01222220 34566
Q ss_pred cCcccccccCCCCEEEEEe
Q 003426 757 RTSFRLSQIEDGDIICFQK 775 (821)
Q Consensus 757 ~~t~~~~el~~GDIi~fQ~ 775 (821)
..|+.+..|..||+|+.-+
T Consensus 103 srtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 103 GRTLREQGVEEHETLLLRR 121 (128)
T ss_dssp SSCHHHHTCCTTSEEEEEE
T ss_pred CCcHHHcCCCCCCEEEEEE
Confidence 7888888999999988754
No 150
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=68.43 E-value=7.6 Score=33.88 Aligned_cols=34 Identities=18% Similarity=0.441 Sum_probs=31.0
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
...|+|.+++++..|.+..++..|++++.+||+.
T Consensus 36 ~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~F 69 (104)
T 1wz0_A 36 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 69 (104)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEES
T ss_pred EEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEE
Confidence 3478999999999999999999999999999964
No 151
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=68.40 E-value=3.1 Score=36.10 Aligned_cols=32 Identities=34% Similarity=0.555 Sum_probs=28.6
Q ss_pred EEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
.++|..+.|+.+|+++|++..|++++++||..
T Consensus 41 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 72 (101)
T 3m63_B 41 EVNVAPESTVLQFKEAINKANGIPVANQRLIY 72 (101)
T ss_dssp CBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcChHHEEEEE
Confidence 45777889999999999999999999999975
No 152
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=67.95 E-value=6 Score=34.80 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=29.7
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+.|..++|+.+|+++|++..|++++++||..
T Consensus 48 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 80 (111)
T 2ojr_A 48 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE
Confidence 357888899999999999999999999999964
No 153
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=67.60 E-value=6.2 Score=33.26 Aligned_cols=32 Identities=16% Similarity=0.378 Sum_probs=27.9
Q ss_pred EEEeecc-----ccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 595 SFRVQKQ-----TSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 595 ~~~v~k~-----~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
.+.+... .|+.+|+++|++..|+|++++||..
T Consensus 20 ~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~ 56 (92)
T 1wxv_A 20 DLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIF 56 (92)
T ss_dssp EEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEE
T ss_pred EEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 4567774 9999999999999999999999963
No 154
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=67.56 E-value=9.5 Score=32.05 Aligned_cols=75 Identities=11% Similarity=0.177 Sum_probs=53.4
Q ss_pred cEEEEEEeecCCCCeEEEeEEE-EEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCC
Q 003426 689 DILLFFKLYDPEKGELRYVGRL-FLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (821)
Q Consensus 689 ~~l~flK~fd~~~~~l~~~g~~-~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~ 767 (821)
.+-|++|+ . .+++. + -|..+.+|.+|...|.++.|+|++..-.+.-.. + +. .++...++....|.+
T Consensus 7 ~m~i~Vk~-~--g~~~~----i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~--~-Gk---~L~D~~~L~~~~i~~ 73 (90)
T 1v5t_A 7 GLPIIVKW-G--GQEYS----VTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKV--K-GK---PAENDVKLGALKLKP 73 (90)
T ss_dssp SCCEEEEE-T--TEEEE----ECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEE--T-TE---ECCTTSBHHHHTCCT
T ss_pred eEEEEEEE-C--CEEEE----EEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeecc--C-Cc---CcCCCCCHHHcCCCC
Confidence 46788884 2 23322 4 578899999999999999999998876661111 1 21 345677899999999
Q ss_pred CCEEEEEeC
Q 003426 768 GDIICFQKS 776 (821)
Q Consensus 768 GDIi~fQ~~ 776 (821)
|+.|..=..
T Consensus 74 g~~l~l~~~ 82 (90)
T 1v5t_A 74 NTKIMMMGT 82 (90)
T ss_dssp TEEEEEECC
T ss_pred CCEEEEEec
Confidence 998887543
No 155
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=67.51 E-value=6.1 Score=35.35 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=29.0
Q ss_pred EEEeeccccHHHHHHHHHHHhCCCCCceEEE
Q 003426 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w 625 (821)
++.|..++|+.+|+++|+...|+|++++||.
T Consensus 15 ~lev~~sdTV~~lK~kI~~~egIP~~qQrLi 45 (118)
T 2fnj_B 15 FTDAKESSTVFELKRIVEGILKRPPEEQRLY 45 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHHCCCGGGEEEE
T ss_pred EEEeCCcChHHHHHHHHHHHhCCCHHHeEEE
Confidence 5688889999999999999999999999997
No 156
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.29 E-value=5.6 Score=35.44 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=42.5
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCCCCCCCCCCCcchhchHHHHHhhhccccccceeEEEEeec
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEF 673 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 673 (821)
.++.+..+.|+.+|++.+++.+++|++++||-. ++. .|.+ +.||.+.. + .+...+.|+...
T Consensus 29 ~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy-----~GK-----iLKD---~eTL~~~g-I-----k~g~TIhLvi~s 89 (118)
T 2daf_A 29 IVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRY-----SGK-----ILKN---NETLVQHG-V-----KPQEIVQVEIFS 89 (118)
T ss_dssp EEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEE-----TTE-----EECS---SCCHHHHS-C-----CSSCEEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEE-----CCe-----EcCC---cchHHHcC-C-----CCCCEEEEEEec
Confidence 456778899999999999999999999999843 332 2322 34666541 1 134678888764
No 157
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=67.28 E-value=11 Score=32.04 Aligned_cols=58 Identities=10% Similarity=0.202 Sum_probs=46.0
Q ss_pred EEEecCCChHHHHHHHHHH---cCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEEEeC
Q 003426 710 LFLKSSSKPIEILRKLNQM---AGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKS 776 (821)
Q Consensus 710 ~~~~~~~~v~~l~~~i~~~---~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~~ 776 (821)
+-|..+.+|.+|...|.+. -|+|++..-.+|. +. .++...|+....|.+|+.|..-..
T Consensus 15 ~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~------Gk---~L~D~~tL~~ygI~~g~~i~l~~~ 75 (95)
T 1uel_A 15 IDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA------GK---ILNDDTALKEYKIDEKNFVVVMVT 75 (95)
T ss_dssp EECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET------TE---ECCTTSBGGGGTCCSSSEEEEEES
T ss_pred EEECCCCHHHHHHHHHHhhcccCCCChhhEEEEEC------CE---ECCCcCcHHHCCCCCCCEEEEEEe
Confidence 4578889999999999998 7899887766663 22 355678999999999998876543
No 158
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=67.05 E-value=7 Score=31.42 Aligned_cols=34 Identities=18% Similarity=0.441 Sum_probs=31.3
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
...++|.+++++..|.+..++..|++++.+||+.
T Consensus 13 ~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f 46 (72)
T 1wm3_A 13 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 46 (72)
T ss_dssp EEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcceEEEEE
Confidence 3478999999999999999999999999999976
No 159
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=67.00 E-value=3.9 Score=35.09 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=28.2
Q ss_pred EEeeccccHHHHHHHHHHHhCCCCCceEEE
Q 003426 596 FRVQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (821)
Q Consensus 596 ~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w 625 (821)
+.|..+.|+.+|+++|++..|++++++||.
T Consensus 22 l~v~~~~TV~~lK~~I~~~tgip~~~QkLi 51 (96)
T 1wgg_A 22 VELNTDEPPMVFKAQLFALTGVQPARQKVM 51 (96)
T ss_dssp EEEESSSCHHHHHHHHHHHTCCCTTTSCCE
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHeEEE
Confidence 678889999999999999999999999996
No 160
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=66.54 E-value=8.3 Score=32.79 Aligned_cols=73 Identities=10% Similarity=0.021 Sum_probs=54.7
Q ss_pred CcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCcc-CcccccccC
Q 003426 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKR-TSFRLSQIE 766 (821)
Q Consensus 688 ~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~-~t~~~~el~ 766 (821)
..+-||+|.-. .+ -.+-|..+.+|.+|...|.+..|+|++..-.+|. +. .++.. .|+....|.
T Consensus 14 ~~~~I~Vk~~~---~~----~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~------Gk---~L~D~~~tL~~ygI~ 77 (94)
T 2kan_A 14 RKIHVTVKFPS---KQ----FTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS------GI---ELADDYRNLNEYGIT 77 (94)
T ss_dssp CCEEEEEECSS---CE----EEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEET------TE---EECCTTSBHHHHTCC
T ss_pred CCEEEEEEcCC---cE----EEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC------CE---ECCCCcccHHHCCCC
Confidence 44788888632 12 2456889999999999999999999987766653 22 24555 899999999
Q ss_pred CCCEEEEEeC
Q 003426 767 DGDIICFQKS 776 (821)
Q Consensus 767 ~GDIi~fQ~~ 776 (821)
+|+.|..-..
T Consensus 78 ~gstl~lv~r 87 (94)
T 2kan_A 78 EFSEIVVFLK 87 (94)
T ss_dssp TTEEEEEEEC
T ss_pred CCCEEEEEEe
Confidence 9998876544
No 161
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=66.47 E-value=5.7 Score=34.36 Aligned_cols=69 Identities=13% Similarity=0.242 Sum_probs=51.2
Q ss_pred EEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCC
Q 003426 690 ILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (821)
Q Consensus 690 ~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GD 769 (821)
+.|++|. ..+++ .+-|..+.+|.+|...|.++.|+|++..-.+|. + ..++...|+....|++|+
T Consensus 29 i~I~Vk~---~g~~~----~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~------G---k~L~D~~tL~~~gI~~g~ 92 (101)
T 3m63_B 29 LNIHIKS---GQDKW----EVNVAPESTVLQFKEAINKANGIPVANQRLIYS------G---KILKDDQTVESYHIQDGH 92 (101)
T ss_dssp CCEEEEC---SSCCC----CBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEET------T---EECCTTSBTTTTTCCTTE
T ss_pred EEEEEEE---CCEEE----EEEeCCCCCHHHHHHHHHHHHCcChHHEEEEEC------C---EECCCcCcHHHCCCCCCC
Confidence 5667774 22222 235678899999999999999999988766662 2 235668899999999999
Q ss_pred EEEEE
Q 003426 770 IICFQ 774 (821)
Q Consensus 770 Ii~fQ 774 (821)
.|..-
T Consensus 93 tI~lv 97 (101)
T 3m63_B 93 SVHLV 97 (101)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 98764
No 162
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=66.00 E-value=5.9 Score=33.49 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=27.8
Q ss_pred EEEeeccccHHHHHHHHHHHh--CCCCCceEEEE
Q 003426 595 SFRVQKQTSFMAFKEEIAKEF--GIPIQLQRFWI 626 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~~--~~~~~~~r~w~ 626 (821)
.+.+..++|+.+|+++|++.. |++++++||..
T Consensus 23 ~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~ 56 (93)
T 1wgd_A 23 ELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIY 56 (93)
T ss_dssp EEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEE
T ss_pred EEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEE
Confidence 445558999999999999999 99999999964
No 163
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=65.72 E-value=6.2 Score=34.98 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=30.3
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
...+.|..++|+.+|+++|++..|+|++++||..
T Consensus 21 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 54 (114)
T 2kdi_A 21 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIW 54 (114)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE
Confidence 4467888899999999999999999999999954
No 164
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=64.66 E-value=9 Score=32.49 Aligned_cols=34 Identities=18% Similarity=0.441 Sum_probs=31.3
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
...|+|.+++++..|.+..++..|++++.+||+.
T Consensus 17 ~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~F 50 (91)
T 2io0_B 17 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 50 (91)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE
Confidence 3478999999999999999999999999999975
No 165
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=64.49 E-value=5.7 Score=34.61 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=29.4
Q ss_pred EEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
.+.|..++|+.+|+++|++..|++++++||..
T Consensus 37 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 68 (106)
T 1ttn_A 37 KLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF 68 (106)
T ss_dssp EEEECTTSHHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred EEEeCCCCcHHHHHHHHHHHHCcCcccEEEEE
Confidence 56888899999999999999999999999975
No 166
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=64.36 E-value=7.4 Score=35.12 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=29.2
Q ss_pred EEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
.++|..++|+.+|+++|++..|++++++||..
T Consensus 45 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 76 (125)
T 1j8c_A 45 EFAVPENSSVQQFKEAISKRFKSQTDQLVLIF 76 (125)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCSCSSSEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCcceEEEEE
Confidence 56888899999999999999999999999964
No 167
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=64.31 E-value=20 Score=30.40 Aligned_cols=72 Identities=17% Similarity=0.290 Sum_probs=53.3
Q ss_pred CCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccC
Q 003426 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (821)
Q Consensus 687 ~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~ 766 (821)
...+-|++| +. .+++ .+-|+.+.+|.+|...|.++.|+|++..-.+| + +.+ ++.. ++....|.
T Consensus 15 ~~~~~i~Vk-~~--g~~~----~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~-----~-Gk~---Ldd~-tL~~~~i~ 77 (95)
T 1v86_A 15 KELVDLKII-WN--KTKH----DVKVPLDSTGSELKQKIHSITGLPPAMQKVMY-----K-GLV---PEDK-TLREIKVT 77 (95)
T ss_dssp CCCEEEEEE-ET--TEEE----EEEECTTSBHHHHHHHHHHHHCSCSTTCCCBS-----S-SBC---CSSS-BHHHHCCC
T ss_pred CceEEEEEE-EC--CEEE----EEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE-----C-Cee---CCcC-cHHHCCCC
Confidence 456889998 43 2332 36789999999999999999999998765553 2 222 3444 99999999
Q ss_pred CCCEEEEEe
Q 003426 767 DGDIICFQK 775 (821)
Q Consensus 767 ~GDIi~fQ~ 775 (821)
+|+.|..-.
T Consensus 78 ~g~~i~lv~ 86 (95)
T 1v86_A 78 SGAKIMVVG 86 (95)
T ss_dssp TTEEEEECC
T ss_pred CCCEEEEEe
Confidence 999887643
No 168
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=64.02 E-value=4.5 Score=34.05 Aligned_cols=28 Identities=11% Similarity=0.246 Sum_probs=25.5
Q ss_pred eccccHHHHHHHH-HHHhCCCCCceEEEE
Q 003426 599 QKQTSFMAFKEEI-AKEFGIPIQLQRFWI 626 (821)
Q Consensus 599 ~k~~~~~~~~~~v-~~~~~~~~~~~r~w~ 626 (821)
..++|+.+|+++| ++..|+|++++||+.
T Consensus 21 ~~~~TV~~lK~~I~~~~~gip~~~QrLi~ 49 (87)
T 2lxa_A 21 SPSDTILQIKQHLISEEKASHISEIKLLL 49 (87)
T ss_dssp CTTCBHHHHHHHHHHTTSCSSSTTEEEEE
T ss_pred CCCCcHHHHHHHHHHHhcCCChHHEEEEE
Confidence 3889999999999 888999999999975
No 169
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=63.98 E-value=14 Score=32.24 Aligned_cols=58 Identities=12% Similarity=0.137 Sum_probs=47.2
Q ss_pred EEEec-CCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEEEeC
Q 003426 710 LFLKS-SSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKS 776 (821)
Q Consensus 710 ~~~~~-~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~~ 776 (821)
+-|.. +.+|.+|...|.+..|+|++..-.+|. + ..++...|+....|.+|+.|..-..
T Consensus 45 l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~------G---k~L~D~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 45 ITVQSLSENVGSLKEKIAGEIQIPANKQKLSGK------A---GFLKDNMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp EEESCSSSBHHHHHHHHHHHTTCCTTTSEEECS------S---SBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred EEecCCCCcHHHHHHHHHHHHCCCHHHeEEEEC------C---EECCCCCcHHHCCCCCCCEEEEEEE
Confidence 56786 999999999999999999988877662 2 2356678999999999999877543
No 170
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=63.92 E-value=27 Score=29.68 Aligned_cols=74 Identities=14% Similarity=0.216 Sum_probs=54.1
Q ss_pred CcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCC
Q 003426 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (821)
Q Consensus 688 ~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~ 767 (821)
..+-|++|+ . .++. ..+-|..+.+|.+|...|.++.|+|++..-.+| + +. .++.. ++....|.+
T Consensus 6 ~~m~i~Vk~-~--g~~~---~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~-----~-Gk---~L~D~-tL~~~~I~~ 69 (96)
T 1wgg_A 6 SGYSVTVKW-G--KEKF---EGVELNTDEPPMVFKAQLFALTGVQPARQKVMV-----K-GG---TLKDD-DWGNIKMKN 69 (96)
T ss_dssp CEEEEEEEE-T--TEEE---EEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEE-----T-TE---ECCSS-CCCSCCCCS
T ss_pred cEEEEEEEE-C--CEEE---EEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE-----C-Cc---CCCCC-CHHHCCCCC
Confidence 457788884 2 2332 125688999999999999999999998776664 2 22 24455 999999999
Q ss_pred CCEEEEEeCC
Q 003426 768 GDIICFQKSP 777 (821)
Q Consensus 768 GDIi~fQ~~~ 777 (821)
|+.|..-...
T Consensus 70 g~~i~l~~~~ 79 (96)
T 1wgg_A 70 GMTVLMMGSA 79 (96)
T ss_dssp SCEEECCCCC
T ss_pred CCEEEEEecc
Confidence 9988875543
No 171
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=63.79 E-value=15 Score=36.32 Aligned_cols=71 Identities=20% Similarity=0.232 Sum_probs=52.8
Q ss_pred CCCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCccccccc
Q 003426 686 SKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI 765 (821)
Q Consensus 686 ~~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el 765 (821)
.++.|-|.++ + ....+ ++-|.++.++.-|+...+++.|+|.++--.+|.= .++....|....++
T Consensus 18 ~~~~i~ikv~--~-~~~~v----~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG---------~~i~~~~Tpk~L~~ 81 (209)
T 3uf8_A 18 PETHINLKVS--D-GSSEI----FFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDG---------IRIQADQTPEDLDM 81 (209)
T ss_dssp CCSEEEEEEE--C-SSCEE----EEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETT---------EECCTTCCTTTTTC
T ss_pred CCCcEEEEEE--c-CCCEE----EEEEeeCCHHHHHHHHHHHhhCCChheEEEEECC---------EeccCCCChHHhhh
Confidence 3455666665 4 33333 4788999999999999999999998776555532 35667778888888
Q ss_pred CCCCEEE
Q 003426 766 EDGDIIC 772 (821)
Q Consensus 766 ~~GDIi~ 772 (821)
.|||+|=
T Consensus 82 ed~d~I~ 88 (209)
T 3uf8_A 82 EDNDIIE 88 (209)
T ss_dssp CTTEEEE
T ss_pred cccccch
Confidence 8999884
No 172
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=63.45 E-value=26 Score=30.19 Aligned_cols=71 Identities=8% Similarity=0.034 Sum_probs=54.1
Q ss_pred EEEEEeecCC----CCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccC
Q 003426 691 LLFFKLYDPE----KGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (821)
Q Consensus 691 l~flK~fd~~----~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~ 766 (821)
+.-|+.+-|. .+++ .+-|..+.+|.+|...|.+..|+|++..-.+|. +. .++...|+....|+
T Consensus 15 ~ati~V~~~~~~~~~~~~----~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~------GK---iL~D~~TL~~y~I~ 81 (100)
T 1wju_A 15 IATIEVFLPPRLKKDRKN----LLETRLHITGRELRSKIAETFGLQENYIKIVIN------KK---QLQLGKTLEEQGVA 81 (100)
T ss_dssp EEEEEEECCTTTCCSSSE----EEEEESSSBHHHHHHHHHHHTTCCSTTCEEEET------TE---ECCTTSBHHHHTCC
T ss_pred eEEEEEEecCCCCCCcEE----EEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeC------Ce---ECCCCCcHHHcCCC
Confidence 5556666555 2333 456889999999999999999999988766654 33 36778899999999
Q ss_pred CCCEEEEE
Q 003426 767 DGDIICFQ 774 (821)
Q Consensus 767 ~GDIi~fQ 774 (821)
+|+-|.+=
T Consensus 82 ~gsti~vl 89 (100)
T 1wju_A 82 HNVKAMVL 89 (100)
T ss_dssp SSEEEEEE
T ss_pred CCCEEEEE
Confidence 99977554
No 173
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=63.38 E-value=8.6 Score=32.82 Aligned_cols=34 Identities=18% Similarity=0.441 Sum_probs=31.1
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
...++|.+++++..|++.+++..|++++++||+.
T Consensus 19 ~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~F 52 (94)
T 2io1_B 19 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 52 (94)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEE
Confidence 3478999999999999999999999999999965
No 174
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=62.84 E-value=8.5 Score=31.59 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=28.5
Q ss_pred EEEeeccccHHHHHHHHHHH---hCCCCCceEEEE
Q 003426 595 SFRVQKQTSFMAFKEEIAKE---FGIPIQLQRFWI 626 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~---~~~~~~~~r~w~ 626 (821)
.+.|..++|+.+|+++|++. .|++++++||..
T Consensus 19 ~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~ 53 (85)
T 2wyq_A 19 KIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY 53 (85)
T ss_dssp EEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEE
T ss_pred EEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEE
Confidence 56888899999999999998 689999999964
No 175
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=62.23 E-value=11 Score=36.56 Aligned_cols=72 Identities=14% Similarity=0.238 Sum_probs=55.3
Q ss_pred EEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCC
Q 003426 690 ILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (821)
Q Consensus 690 ~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GD 769 (821)
+-||+|..+-. ++ .+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++...|+....|++|+
T Consensus 106 MqI~VKtl~Gk--t~----~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~------G---k~L~D~~tL~dygI~~gs 170 (189)
T 3q3f_A 106 GQIFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQKES 170 (189)
T ss_dssp EEEEEECTTSC--EE----EEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET------T---EECCTTCBGGGGTCCTTC
T ss_pred eeeeeecCCCC--EE----EEEeCCCCcHHHHHHHHHhccCCCHHHEEEEEC------C---EECCCCCCHHHCCCCCCC
Confidence 78898876533 22 246789999999999999999999987765552 2 235567899999999999
Q ss_pred EEEEEeC
Q 003426 770 IICFQKS 776 (821)
Q Consensus 770 Ii~fQ~~ 776 (821)
.|-.-..
T Consensus 171 tI~Lvlr 177 (189)
T 3q3f_A 171 TLHLVLR 177 (189)
T ss_dssp EEEECCC
T ss_pred EEEEEEE
Confidence 9877544
No 176
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=62.23 E-value=7.8 Score=34.28 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=30.4
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..++.|..++|+.+|+++|++..|++++++||..
T Consensus 47 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~ 80 (115)
T 1we7_A 47 GLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQY 80 (115)
T ss_dssp EEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence 3467888899999999999999999999999965
No 177
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=61.81 E-value=5.1 Score=34.98 Aligned_cols=33 Identities=6% Similarity=0.143 Sum_probs=29.2
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+.|..++|+.+|+++|++..|++++++||..
T Consensus 14 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 46 (106)
T 3m62_B 14 VPLDLEPSNTILETKTKLAQSISCEESQIKLIY 46 (106)
T ss_dssp EEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE
Confidence 356778899999999999999999999999864
No 178
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=61.79 E-value=8.5 Score=33.76 Aligned_cols=33 Identities=30% Similarity=0.326 Sum_probs=29.7
Q ss_pred eEEEeec-cccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQK-QTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k-~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+.|.. ++|+.+|+++|++..|+|++++||..
T Consensus 43 ~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~ 76 (111)
T 1we6_A 43 MEITVQSLSENVGSLKEKIAGEIQIPANKQKLSG 76 (111)
T ss_dssp EEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEEC
T ss_pred EEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEE
Confidence 4578887 99999999999999999999999964
No 179
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=61.78 E-value=11 Score=32.10 Aligned_cols=33 Identities=15% Similarity=0.420 Sum_probs=30.8
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..|+|.+++++..|.+..++..|++++.+||+.
T Consensus 30 i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f 62 (93)
T 2d07_B 30 VQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 62 (93)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEEccCCHHHHHHHHHHHHhCCCccceEEEE
Confidence 478999999999999999999999999999975
No 180
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=61.55 E-value=10 Score=33.66 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=31.1
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..|+|.+++++..|.+..++..|++++.+|||.
T Consensus 53 v~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlF 85 (115)
T 3kyd_D 53 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 85 (115)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEE
T ss_pred EEEEEccCChHHHHHHHHHHHhCCChhhEEEEE
Confidence 468999999999999999999999999999987
No 181
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=60.81 E-value=8.6 Score=33.93 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=30.8
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
...|+|.+++++..|.+..++..|++++.+||+.
T Consensus 38 ~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiF 71 (110)
T 2k8h_A 38 EMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF 71 (110)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEES
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE
Confidence 3478999999999999999999999999999964
No 182
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=60.26 E-value=11 Score=32.98 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=31.3
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
...|+|.+++++..|.+..++..|++++.+||+.
T Consensus 42 ~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~F 75 (106)
T 2eke_C 42 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY 75 (106)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEE
Confidence 3468999999999999999999999999999986
No 183
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=60.01 E-value=5.9 Score=34.64 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=28.5
Q ss_pred EEEee-ccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 595 SFRVQ-KQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 595 ~~~v~-k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
.+.|. .++|+.+|+++|++.+|++++++||..
T Consensus 20 ~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~ 52 (107)
T 1wf9_A 20 RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLST 52 (107)
T ss_dssp EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBS
T ss_pred EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEE
Confidence 46777 889999999999999999999999854
No 184
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=58.73 E-value=14 Score=32.61 Aligned_cols=58 Identities=16% Similarity=0.265 Sum_probs=47.2
Q ss_pred EEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEEEeC
Q 003426 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKS 776 (821)
Q Consensus 710 ~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~~ 776 (821)
+-|+.+.+|.+|...|.+..|+|++..-.+|. +. .++...|+....|.+|+.|..-..
T Consensus 50 l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~------Gk---~L~D~~tL~~y~i~~g~~i~lv~r 107 (115)
T 1we7_A 50 FTLPLTDQVSVIKVKIHEATGMPAGKQKLQYE------GI---FIKDSNSLAYYNMASGAVIHLALK 107 (115)
T ss_dssp EEECSCSBTHHHHHHHHHHSSCCTTTEEEEET------TE---EECTTSBHHHHTCCSSCEEEEEEC
T ss_pred EEECCCCCHHHHHHHHHHHHCCChHHEEEEEC------CE---ECCCCCCHHHCCCCCCCEEEEEEE
Confidence 55788999999999999999999988776662 22 345678999999999999877643
No 185
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=58.35 E-value=11 Score=31.95 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=28.3
Q ss_pred EEEeeccccHHHHHHHHHHH---hCCCCCceEEEE
Q 003426 595 SFRVQKQTSFMAFKEEIAKE---FGIPIQLQRFWI 626 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~---~~~~~~~~r~w~ 626 (821)
.+.|..++|+.+|+++|++. .|+|++++||..
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~ 48 (95)
T 1uel_A 14 KIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIY 48 (95)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEE
T ss_pred EEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEE
Confidence 56788899999999999999 689999999954
No 186
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=58.15 E-value=9.7 Score=38.28 Aligned_cols=67 Identities=19% Similarity=0.234 Sum_probs=46.2
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCC-ceEEEEEeecCCCCCCCCCCCCCcchhchHHHHHhhhccccccceeEEEEee
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQ-LQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVE 672 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~-~~r~w~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 672 (821)
.+.++.|..|+.+|++.+.+.|+++.+ .+|||.+....+.. .| .+.+.||+++. -..+-.|.+|+.
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~-----~L--~~~~~tl~d~~------L~~~Q~illE~r 220 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYE-----QL--SKLDNTIQDAG------LYQGQVLVIEPQ 220 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCE-----EC--CCTTSBTTTTT------CCTTEEEEEEEC
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHh-----hh--cCCCCCHHHhC------CCCCCEEEEEEe
Confidence 356788999999999999999999997 69999976443221 12 22345665542 113457899986
Q ss_pred c
Q 003426 673 F 673 (821)
Q Consensus 673 ~ 673 (821)
.
T Consensus 221 ~ 221 (231)
T 3jyu_A 221 N 221 (231)
T ss_dssp C
T ss_pred c
Confidence 4
No 187
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=58.06 E-value=15 Score=36.03 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=31.6
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
...|+|.+++++..|.+..++..|++++.+||+.
T Consensus 40 ~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~F 73 (200)
T 3pge_A 40 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY 73 (200)
T ss_dssp EEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEE
T ss_pred EEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEE
Confidence 3478999999999999999999999999999987
No 188
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.92 E-value=29 Score=29.03 Aligned_cols=73 Identities=8% Similarity=0.043 Sum_probs=52.7
Q ss_pred EEEEEEeecCCCCeEEEeEEE-EEecCCChHHHHHHHHHH-cCCCCCCcEEEEEeeccCccccccccCccCcccccccCC
Q 003426 690 ILLFFKLYDPEKGELRYVGRL-FLKSSSKPIEILRKLNQM-AGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (821)
Q Consensus 690 ~l~flK~fd~~~~~l~~~g~~-~~~~~~~v~~l~~~i~~~-~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~ 767 (821)
+-||+|--...+. ++.+ -|..+.+|.+|...|.+. -|+|++..-..|.. + +. .++...|+....|.+
T Consensus 11 M~I~Vk~~~g~~~----~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~---~-Gk---~L~D~~tL~~y~i~~ 79 (88)
T 2dzj_A 11 YEVEILDAKTREK----LCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDP---K-GK---SLKDEDVLQKLPVGT 79 (88)
T ss_dssp EEEEEEESSSCCC----CEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESST---T-SC---CCCTTCBTTTSSCCS
T ss_pred EEEEEECCCCCEE----eeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecC---C-Cc---CcCCCCCHHHcCCCC
Confidence 4566664432222 3566 789999999999999995 79998876555431 1 22 466788999999999
Q ss_pred CCEEEE
Q 003426 768 GDIICF 773 (821)
Q Consensus 768 GDIi~f 773 (821)
|+-|.|
T Consensus 80 ~stl~~ 85 (88)
T 2dzj_A 80 TATLYF 85 (88)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 998877
No 189
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=55.96 E-value=17 Score=33.25 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=47.0
Q ss_pred EEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEEEeCC
Q 003426 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSP 777 (821)
Q Consensus 709 ~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~~~ 777 (821)
.+-|+.+.+|.+|...|.+..|+|++..-.+|. +. .++...|+....+.+|+.|..-...
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~------g~---~L~d~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------GK---QLEDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET------TE---ECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHHeEEEEC------Ce---ECcCcccHHHhccCCCCeeEEEeec
Confidence 356788999999999999999999987666652 21 3466789999999999988776543
No 190
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.50 E-value=14 Score=32.93 Aligned_cols=74 Identities=9% Similarity=0.047 Sum_probs=56.9
Q ss_pred EEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCC
Q 003426 690 ILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (821)
Q Consensus 690 ~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GD 769 (821)
+-+.+|..-+ .++. .+-+..+.+|.+|...+.+..+.|++..-.+|..- .++.+.|+.+..+.+|.
T Consensus 16 itvkv~l~~~-~~k~----tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GK---------iLKD~eTL~~~gIk~g~ 81 (118)
T 2daf_A 16 ATVKVVLIPV-GQEI----VIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGK---------ILKNNETLVQHGVKPQE 81 (118)
T ss_dssp EEEEEEETTT-CCEE----EEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTE---------EECSSCCHHHHSCCSSC
T ss_pred EEEEEEEcCC-CcEE----EEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCe---------EcCCcchHHHcCCCCCC
Confidence 5555554433 3443 33488999999999999999999999888777533 36789999999999999
Q ss_pred EEEEEeCC
Q 003426 770 IICFQKSP 777 (821)
Q Consensus 770 Ii~fQ~~~ 777 (821)
+|=.-+..
T Consensus 82 TIhLvi~s 89 (118)
T 2daf_A 82 IVQVEIFS 89 (118)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEec
Confidence 98776543
No 191
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.09 E-value=10 Score=31.90 Aligned_cols=31 Identities=13% Similarity=0.058 Sum_probs=27.5
Q ss_pred EE-EeeccccHHHHHHHHHHH-hCCCCCceEEE
Q 003426 595 SF-RVQKQTSFMAFKEEIAKE-FGIPIQLQRFW 625 (821)
Q Consensus 595 ~~-~v~k~~~~~~~~~~v~~~-~~~~~~~~r~w 625 (821)
++ .|..++|+.+|++.|++. -|++++++||-
T Consensus 26 ~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~ 58 (88)
T 2dzj_A 26 FLDKVEPHATIAEIKNLFTKTHPQWYPARQSLR 58 (88)
T ss_dssp EEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEE
T ss_pred EEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEE
Confidence 56 788899999999999996 68999999983
No 192
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=54.96 E-value=12 Score=35.58 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=29.8
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+.|..++|+.+|+++|++..|+|++++||..
T Consensus 13 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 45 (169)
T 3l0w_B 13 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45 (169)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEE
Confidence 357888899999999999999999999999864
No 193
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=53.84 E-value=6.6 Score=32.72 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=25.5
Q ss_pred eeccccHHHHHHHHHHHhCCCCCceEEE
Q 003426 598 VQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (821)
Q Consensus 598 v~k~~~~~~~~~~v~~~~~~~~~~~r~w 625 (821)
+..++|+.+|++.|++..|++++++||-
T Consensus 17 l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~ 44 (86)
T 2kzr_A 17 LSSRTRLRELQGQIAAITGIAPGSQRIL 44 (86)
T ss_dssp CCTTCBHHHHHHHHHHHTCCCTTTCCCE
T ss_pred cCCCCCHHHHHHHHHHHhCCCccceEEE
Confidence 6678999999999999999999999984
No 194
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=53.56 E-value=9.9 Score=32.72 Aligned_cols=31 Identities=10% Similarity=0.219 Sum_probs=26.6
Q ss_pred EEeeccccHHHHHHHH-HHHhCCCCCceEEEE
Q 003426 596 FRVQKQTSFMAFKEEI-AKEFGIPIQLQRFWI 626 (821)
Q Consensus 596 ~~v~k~~~~~~~~~~v-~~~~~~~~~~~r~w~ 626 (821)
+.+..+.|+.+|+++| ++..|+|++++||..
T Consensus 36 v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~ 67 (98)
T 4a20_A 36 HDFSPSDTILQIKQHLISEEKASHISEIKLLL 67 (98)
T ss_dssp EEECTTCBHHHHHHHHHHTTSCSCGGGEEEEE
T ss_pred EecCCCChHHHHHHHHHHHhcCCChhhEEEEE
Confidence 3556899999999999 777899999999864
No 195
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=53.07 E-value=18 Score=34.38 Aligned_cols=57 Identities=16% Similarity=0.269 Sum_probs=41.7
Q ss_pred EEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEEEe
Q 003426 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQK 775 (821)
Q Consensus 710 ~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~ 775 (821)
+-|..+.+|.+|...|.+..|+|++..-.+|.- ..++...|+....|++|+.|-.-.
T Consensus 15 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G---------k~L~D~~tL~~y~I~~gstI~Lvl 71 (169)
T 3l0w_B 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAG---------KQLEDGRTLSDYNIQKESTLHLVL 71 (169)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCTTTEEEEETT---------EECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECC---------ccccCcCcHHHcCCCCCCEEEEEE
Confidence 457889999999999999999999887766621 124455666666677776665543
No 196
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=57.97 E-value=2.9 Score=33.72 Aligned_cols=32 Identities=31% Similarity=0.495 Sum_probs=28.2
Q ss_pred EEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
.+.+..++|+.+|++.|++..|+|++++||..
T Consensus 14 ~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~ 45 (76)
T 3b1l_X 14 PVEVDSDTSILQLKEVVAKQQGVPADQLRVIF 45 (76)
Confidence 45777789999999999999999999999853
No 197
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=52.48 E-value=34 Score=28.60 Aligned_cols=75 Identities=12% Similarity=0.060 Sum_probs=53.0
Q ss_pred cEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHc--CCCCCCcEEEEEeeccCccccccccCccCccccc--c
Q 003426 689 DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMA--GFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLS--Q 764 (821)
Q Consensus 689 ~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~--g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~--e 764 (821)
.+-|++|.-+-.. +.-.+-+..+.+|.+|...|.+.. |+|++..-.+|. +. .++...|+... .
T Consensus 7 ~m~i~Vk~~~~~~----~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~------Gk---~L~D~~tL~~~~~~ 73 (93)
T 1wgd_A 7 GVTLLVKSPNQRH----RDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS------GK---LLLDHQCLRDLLPK 73 (93)
T ss_dssp CCEEEEECSSSSC----CCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET------TE---ECCSSSCHHHHSCS
T ss_pred EEEEEEEeCCCCe----EEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEEC------CE---ECcCcCCHHHHhcC
Confidence 4677887653321 112233458999999999999998 999887766653 32 35566788888 8
Q ss_pred cCCCCEEEEEeC
Q 003426 765 IEDGDIICFQKS 776 (821)
Q Consensus 765 l~~GDIi~fQ~~ 776 (821)
|.+|+.|..-..
T Consensus 74 i~~~~~i~lv~~ 85 (93)
T 1wgd_A 74 QEKRHVLHLVCN 85 (93)
T ss_dssp SSCSEEEEEECC
T ss_pred CCCCCEEEEEeC
Confidence 999998876543
No 198
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=57.44 E-value=3 Score=33.63 Aligned_cols=55 Identities=11% Similarity=0.237 Sum_probs=43.0
Q ss_pred EEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEE
Q 003426 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICF 773 (821)
Q Consensus 710 ~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~f 773 (821)
+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++...|+....+.+|+.|..
T Consensus 15 ~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~------g---k~L~d~~tL~~~~i~~g~~i~l 69 (76)
T 3b1l_X 15 VEVDSDTSILQLKEVVAKQQGVPADQLRVIFA------G---KELPNHLTVQNCDLEQQSIVHI 69 (76)
Confidence 45677899999999999999999877665553 2 1345678999999999997754
No 199
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=51.69 E-value=97 Score=26.10 Aligned_cols=66 Identities=21% Similarity=0.349 Sum_probs=44.9
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCCCCCCCCCCCcchhchHHHHHhhhccccccceeEEEEee
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVE 672 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 672 (821)
...+.|+.+.|+.+|...|.+.+++++++- +..++ |++.-|. ++.+|+++++.... +=.||+...
T Consensus 21 k~KflVp~~~tv~~~~~~lRkrL~l~~~~a-lFlyV---nn~~~P~-------~d~~~~~Ly~~~k~----DGfLyv~Ys 85 (91)
T 4gdk_A 21 TKKWAVERTRTIQGLIDFIKKFLKLVASEQ-LFIYV---NQSFAPS-------PDQEVGTLYECFGS----DGKLVLHYC 85 (91)
T ss_dssp CCEEEEETTCBHHHHHHHHHHHTTCCSSSC-CEEEE---TTTBCCC-------TTCBHHHHHHHHCB----TTEEEEEEE
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhCCCCCCe-EEEEE---CCccCCC-------hhhHHHHHHHHhCC----CCEEEEEEe
Confidence 346899999999999999999999987652 33333 4443332 24589999876542 224777655
Q ss_pred c
Q 003426 673 F 673 (821)
Q Consensus 673 ~ 673 (821)
.
T Consensus 86 ~ 86 (91)
T 4gdk_A 86 K 86 (91)
T ss_dssp S
T ss_pred C
Confidence 3
No 200
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=51.00 E-value=19 Score=30.97 Aligned_cols=34 Identities=6% Similarity=0.241 Sum_probs=31.2
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
...|+|.+++++..|.+..++..|++++.+||+.
T Consensus 38 ~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F 71 (97)
T 2jxx_A 38 TLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF 71 (97)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE
Confidence 3478999999999999999999999999999976
No 201
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=49.96 E-value=15 Score=32.10 Aligned_cols=76 Identities=12% Similarity=0.136 Sum_probs=54.2
Q ss_pred EEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCc---------------EEEEEeeccCcccccccc
Q 003426 690 ILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEE---------------IELYEEIKFEPCVMCEHL 754 (821)
Q Consensus 690 ~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~---------------l~lyEEik~~p~~i~e~i 754 (821)
+-|++|-.+-. ++ .+.|..+.+|.+|...|.+..|+|++.+ -.+| .+.+ ..
T Consensus 8 M~I~Vk~l~g~--~~----~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~------~Gk~--L~ 73 (105)
T 1v2y_A 8 MTVRVCKMDGE--VM----PVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS------AGEK--LT 73 (105)
T ss_dssp EEEEEECSSSC--EE----EEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEES------SSCE--EC
T ss_pred EEEEEEecCCC--EE----EEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEe------CCcC--cc
Confidence 67777754432 33 2678999999999999999999887321 2223 2322 23
Q ss_pred CccCcccccccCCCCEEEEEeCCCC
Q 003426 755 DKRTSFRLSQIEDGDIICFQKSPPL 779 (821)
Q Consensus 755 ~~~~t~~~~el~~GDIi~fQ~~~~~ 779 (821)
+...|+....|++||.|.|=.....
T Consensus 74 dD~~tL~dygI~~g~~l~lv~~lr~ 98 (105)
T 1v2y_A 74 EDRKKLRDYGIRNRDEVSFIKKLGQ 98 (105)
T ss_dssp CSSSBHHHHTCCSSEEEEEEECSCS
T ss_pred CCcCCHHHcCCCCCCEEEEEehhcc
Confidence 5678999999999999999876543
No 202
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=47.86 E-value=3.8 Score=40.26 Aligned_cols=56 Identities=18% Similarity=0.193 Sum_probs=0.0
Q ss_pred EEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEE
Q 003426 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICF 773 (821)
Q Consensus 709 ~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~f 773 (821)
++-|.++.+++.|+...+++.|+|.+.---+|.- ..|.++.|....++.|||+|=+
T Consensus 34 ~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDG---------qRI~dddTPadL~MEDGDtIDV 89 (227)
T 3v7o_A 34 FFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDG---------IRIQADQTPEDLDMEDNDIIEA 89 (227)
T ss_dssp -----------------------------------------------------------------
T ss_pred EEEEccCChHHHHHHHHHHHhCCCccceEEEECC---------EecCCCCCHHHcCCCCCCEEEE
Confidence 5667899999999999999999998544334432 3577789999999999997743
No 203
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=47.22 E-value=16 Score=31.43 Aligned_cols=32 Identities=9% Similarity=0.053 Sum_probs=26.3
Q ss_pred EEEeeccccHHHHHHHHHHHh-CC-CCCceEEEE
Q 003426 595 SFRVQKQTSFMAFKEEIAKEF-GI-PIQLQRFWI 626 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~~-~~-~~~~~r~w~ 626 (821)
++.+..++|+.+|+++|++.+ |. +++++||..
T Consensus 39 ~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy 72 (99)
T 2kdb_A 39 TISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVY 72 (99)
T ss_dssp EEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEE
T ss_pred EEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEE
Confidence 667788999999999999876 44 459999953
No 204
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=46.54 E-value=17 Score=35.37 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=29.8
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+.|..++|+.+|+++|++..|+|++++||..
T Consensus 118 ~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~ 150 (189)
T 3q3f_A 118 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 150 (189)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE
T ss_pred EEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEE
Confidence 357888899999999999999999999999964
No 205
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=46.17 E-value=25 Score=32.67 Aligned_cols=72 Identities=18% Similarity=0.176 Sum_probs=53.5
Q ss_pred EEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEE-EEeeccCccccccccCccCcccccccCCCC
Q 003426 691 LLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIEL-YEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (821)
Q Consensus 691 l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~l-yEEik~~p~~i~e~i~~~~t~~~~el~~GD 769 (821)
-||+|..+-. ++ .+-|..+.+|.+|...|.+..|+|++..-.+ |+ .+. .++...|++...|.+|+
T Consensus 4 ~i~vk~~~g~--~~----~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~-----~g~---~L~d~~tL~~y~i~~~~ 69 (159)
T 3rt3_B 4 DLTVKMLAGN--EF----QVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHP-----SGV---ALQDRVPLASQGLGPGS 69 (159)
T ss_dssp EEEEEETTSC--EE----EEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEET-----TCC---BCCTTSCGGGGTCCTTC
T ss_pred EEEEEECCCC--EE----EEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcC-----CCC---CCCCCCCHHHcCCCCCC
Confidence 4666655422 22 2467899999999999999999999777665 63 222 35778899999999999
Q ss_pred EEEEEeC
Q 003426 770 IICFQKS 776 (821)
Q Consensus 770 Ii~fQ~~ 776 (821)
.|..-..
T Consensus 70 ~l~l~~~ 76 (159)
T 3rt3_B 70 TVLLVVD 76 (159)
T ss_dssp EEEEEEC
T ss_pred EEEEEcc
Confidence 9887765
No 206
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=46.13 E-value=21 Score=30.39 Aligned_cols=35 Identities=6% Similarity=0.176 Sum_probs=31.6
Q ss_pred cceEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 592 KVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 592 ~~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
....|+|++++.++.|.+..|+..|++++.+||..
T Consensus 31 ~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlf 65 (95)
T 2l76_A 31 DLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLF 65 (95)
T ss_dssp SEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEE
T ss_pred cEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEE
Confidence 34578999999999999999999999999999964
No 207
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=44.31 E-value=4.7 Score=36.51 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=0.0
Q ss_pred EEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEEEeCC
Q 003426 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSP 777 (821)
Q Consensus 710 ~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~~~ 777 (821)
+.|..+.+|.+|...|.+..|+|++..-.+|. + ..++...|+....|.+|+.|-.-...
T Consensus 15 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~------G---k~L~D~~tL~~~~I~~gsti~l~~rl 73 (128)
T 3u5e_m 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQKESTLHLVLRL 73 (128)
T ss_dssp --------------------------------------------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHhCcChHHEEEEEC------C---EECCCCCchhhhccCCCCEEEEEEEc
Confidence 45678899999999999999999987765552 2 23566889999999999987665443
No 208
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=44.11 E-value=43 Score=28.64 Aligned_cols=72 Identities=7% Similarity=0.031 Sum_probs=49.0
Q ss_pred CcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHc-CCCC-CCcEEEEEeeccCccccccccCccCccccc--
Q 003426 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMA-GFDP-DEEIELYEEIKFEPCVMCEHLDKRTSFRLS-- 763 (821)
Q Consensus 688 ~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~-g~p~-~t~l~lyEEik~~p~~i~e~i~~~~t~~~~-- 763 (821)
..+-||+|..+-....+ .+-|..+.+|.+|...|.+.. |.|+ +..-.+|. +. .++...|+...
T Consensus 22 ~~m~I~VK~~~g~~~~i----~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~------Gk---~L~D~~tL~~y~~ 88 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQ----TISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYS------GR---LLPDHLQLKDILR 88 (99)
T ss_dssp -CEEEEEECTTSSSCCE----EEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEET------TE---EECTTSBTHHHHT
T ss_pred CeEEEEEEcCCCCEEEE----EEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEEC------CE---ECCCCCCHHHHhc
Confidence 45888988755443233 345689999999999999865 5554 55444442 32 35667788887
Q ss_pred ccCCCCEEE
Q 003426 764 QIEDGDIIC 772 (821)
Q Consensus 764 el~~GDIi~ 772 (821)
.|++|+.|.
T Consensus 89 ~I~~~~tih 97 (99)
T 2kdb_A 89 KQDEYHMVH 97 (99)
T ss_dssp TTCSEEEEE
T ss_pred CCCCCCEEE
Confidence 899998874
No 209
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=43.72 E-value=42 Score=29.19 Aligned_cols=58 Identities=10% Similarity=0.057 Sum_probs=44.3
Q ss_pred EeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCccccccc-CCCCEEE
Q 003426 706 YVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI-EDGDIIC 772 (821)
Q Consensus 706 ~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el-~~GDIi~ 772 (821)
..-.+-|..+.+|.+|...|.+..|+|++..=.+| -+ ..++...|+....| ++|+.|-
T Consensus 37 ~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~------gg---kll~D~~TL~~ygI~~~G~t~h 95 (105)
T 4dbg_A 37 VTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVI------GQ---RLARDQETLHSHGVRQNGDSAY 95 (105)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE------TT---EEECTTCBTGGGTCCSTTCEEE
T ss_pred ceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEec------cC---eEccCcCcHHHcCCCCCCCEEE
Confidence 33456678999999999999999999997764221 12 24667889999999 6999763
No 210
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=43.06 E-value=28 Score=29.51 Aligned_cols=31 Identities=6% Similarity=0.185 Sum_probs=29.0
Q ss_pred EEEecCCChHHHHHHHHHHcCCCCCCcEEEE
Q 003426 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELY 740 (821)
Q Consensus 710 ~~~~~~~~v~~l~~~i~~~~g~p~~t~l~ly 740 (821)
+.|+.+.++++++-.|+++++++++..|-||
T Consensus 24 flVp~~~tv~~~~~~lRkrL~l~~~~alFly 54 (91)
T 4gdk_A 24 WAVERTRTIQGLIDFIKKFLKLVASEQLFIY 54 (91)
T ss_dssp EEEETTCBHHHHHHHHHHHTTCCSSSCCEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCCCeEEEE
Confidence 5689999999999999999999999999888
No 211
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=42.01 E-value=53 Score=28.27 Aligned_cols=79 Identities=18% Similarity=0.139 Sum_probs=56.7
Q ss_pred EEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCcc-ccccccCccCccc----ccccC
Q 003426 692 LFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPC-VMCEHLDKRTSFR----LSQIE 766 (821)
Q Consensus 692 ~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~-~i~e~i~~~~t~~----~~el~ 766 (821)
+++|+|..+.... .+.|....++.+++..|.++.+...+..-.|||.+ |. -+-..+.....+. .=+..
T Consensus 10 ~vvkvf~~Dgssk----si~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~---P~L~~ER~~EDHE~vvevl~~W~~~ 82 (100)
T 1wgr_A 10 HVVKVYSEDGACR----SVEVAAGATARHVCEMLVQRAHALSDETWGLVECH---PHLALERGLEDHESVVEVQAAWPVG 82 (100)
T ss_dssp EEEEEEETTSCEE----EEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEE---TTTTEEEEECSSSCHHHHHTTSCSS
T ss_pred EEEEEEecCCCEE----EEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEec---CCCCcEEeccCchhHHHHHhhCccC
Confidence 5788887665553 57889999999999999999999999999999999 43 1212344444332 23455
Q ss_pred CCCEEEEEeCC
Q 003426 767 DGDIICFQKSP 777 (821)
Q Consensus 767 ~GDIi~fQ~~~ 777 (821)
..--|+|.+..
T Consensus 83 s~nr~~F~kr~ 93 (100)
T 1wgr_A 83 GDSRFVFRKNF 93 (100)
T ss_dssp SCCEEEECSCC
T ss_pred CCcEEEEecch
Confidence 66778887653
No 212
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=40.99 E-value=5.7 Score=35.95 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=0.0
Q ss_pred EEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
.+.|..++|+.+|++.|++..|+|++++||..
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 45 (128)
T 3u5e_m 14 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45 (128)
T ss_dssp --------------------------------
T ss_pred EEEeCCCCCHHHHHHHHHHHhCcChHHEEEEE
Confidence 45778889999999999999999999999864
No 213
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=40.74 E-value=45 Score=28.77 Aligned_cols=54 Identities=9% Similarity=0.053 Sum_probs=41.9
Q ss_pred CCChHHHHHHHHHHc--CCCCCC-cEEEEEeeccCccccccccCccCcccccccCCCCEEEEEeCC
Q 003426 715 SSKPIEILRKLNQMA--GFDPDE-EIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSP 777 (821)
Q Consensus 715 ~~~v~~l~~~i~~~~--g~p~~t-~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~~~ 777 (821)
+.+|.+|...|.+.. |+|++. .-.+|. +. .++...|+....|.+|+.|..-...
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi~~------Gk---~L~D~~tL~~y~i~~g~~i~lv~~~ 100 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLIYC------GR---KLKDDQTLDFYGIQPGSTVHVLRKS 100 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEEET------TE---ECCTTCBHHHHTCCTTCEEEEEESS
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEEEC------Ce---ECCCCCcHHHcCCCCCCEEEEEeCC
Confidence 489999999999999 999987 544442 22 3466789999999999988775543
No 214
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=40.53 E-value=5.9 Score=37.18 Aligned_cols=58 Identities=16% Similarity=0.257 Sum_probs=0.0
Q ss_pred EEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCCEEEEEeC
Q 003426 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKS 776 (821)
Q Consensus 710 ~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GDIi~fQ~~ 776 (821)
+-|..+++|.+|...|.+..|+|++..-.+|. + ..++...|+....|++|+.|-.-..
T Consensus 15 l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~------G---k~L~D~~tL~dygI~~gstL~Lvlr 72 (152)
T 3u5c_f 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp -------------------------------------------------------------------
T ss_pred EEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC------C---EEccccCcHHHcCCCCCCEEEEEee
Confidence 45678899999999999999999988766553 2 2355678999999999998876543
No 215
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=40.53 E-value=29 Score=29.57 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=30.2
Q ss_pred cceEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 592 KVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 592 ~~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..-++-|....|+..|++.|.++.|++++++||-.
T Consensus 24 ~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~ 58 (94)
T 4efo_A 24 TAHKIYIHSYNTATIFHELVYKQTKIISSNQELIY 58 (94)
T ss_dssp EEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred eEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHh
Confidence 34467788889999999999999999999999854
No 216
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=39.99 E-value=29 Score=30.01 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=23.7
Q ss_pred cccHHHHHHHHHHHh--CCCCCc-eEEEE
Q 003426 601 QTSFMAFKEEIAKEF--GIPIQL-QRFWI 626 (821)
Q Consensus 601 ~~~~~~~~~~v~~~~--~~~~~~-~r~w~ 626 (821)
++|+.+|+++|++.. |+++++ +||..
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi~ 72 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLIY 72 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEEE
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEEE
Confidence 389999999999999 999999 99953
No 217
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=39.93 E-value=37 Score=27.85 Aligned_cols=46 Identities=11% Similarity=0.142 Sum_probs=36.5
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCC-ceEEEEEeecCCCCCCCCCCCCC
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQ-LQRFWIWAKRQNHTYRPNRPLLP 643 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~-~~r~w~~~~~~n~~~r~~~~~~~ 643 (821)
..++|+.++++.++...-.+..|++++ .+||-. -+..++|+..+.+
T Consensus 22 l~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllF----DGdRLdp~~tp~D 68 (82)
T 3goe_A 22 LRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEF----EGEWLDPNDQVQS 68 (82)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEE----TTEECCTTSBGGG
T ss_pred eEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEE----cCcccCccCChhh
Confidence 478999999999999999999999999 799853 2334677766543
No 218
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=39.49 E-value=56 Score=34.15 Aligned_cols=72 Identities=14% Similarity=0.271 Sum_probs=55.0
Q ss_pred CcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCC
Q 003426 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (821)
Q Consensus 688 ~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~ 767 (821)
..+-|++|..+-. ++ .+-|..+.+|.+|...|.++.|+|++..-.+|. +. .++...|+....|.+
T Consensus 232 ~~MqI~VKtl~Gk--~~----~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~------Gk---~L~D~~TLsdygI~~ 296 (307)
T 3ai5_A 232 GSMQIFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------GK---QLEDGRTLSDYNIQK 296 (307)
T ss_dssp CCEEEEEECTTSC--EE----EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET------TE---ECCTTSBTGGGTCCT
T ss_pred CeEEEEEEeCCCC--EE----EEEECCCCcHHHHHHHHHHHHCcChHHEEEEeC------Ce---ecCCCCCHHHcCCCC
Confidence 4477888875432 22 456889999999999999999999987766663 22 355678999999999
Q ss_pred CCEEEEE
Q 003426 768 GDIICFQ 774 (821)
Q Consensus 768 GDIi~fQ 774 (821)
|+.|..-
T Consensus 297 gstL~Lv 303 (307)
T 3ai5_A 297 ESTLHLV 303 (307)
T ss_dssp TCEEEEE
T ss_pred CCEEEEE
Confidence 9988653
No 219
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=38.33 E-value=39 Score=30.08 Aligned_cols=31 Identities=6% Similarity=0.184 Sum_probs=28.7
Q ss_pred EEEecCCChHHHHHHHHHHcCCCCCCcEEEE
Q 003426 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELY 740 (821)
Q Consensus 710 ~~~~~~~~v~~l~~~i~~~~g~p~~t~l~ly 740 (821)
+.|+.+.+|++++..|+++++++++..|-||
T Consensus 51 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~ 81 (118)
T 3rui_B 51 YLVPADLTVGQFVYVIRKRIMLPPEKAIFIF 81 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTCCEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCcCCCccEEEE
Confidence 4589999999999999999999999988888
No 220
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=36.87 E-value=7.2 Score=36.54 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=0.0
Q ss_pred EEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
.+.|..++|+.+|++.|++..|+|++++||..
T Consensus 14 ~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~ 45 (152)
T 3u5c_f 14 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45 (152)
T ss_dssp --------------------------------
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 45777889999999999999999999999864
No 221
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=36.43 E-value=25 Score=37.09 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=28.8
Q ss_pred EEEeeccccHHHHHHHHHHHhCCCCCceEEE
Q 003426 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w 625 (821)
++.|..++|+.+|+++|++..|+|++++||.
T Consensus 18 ~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi 48 (320)
T 3shq_A 18 PVDLTDQDTVEVLRHEIFRKTQVRPERQKLL 48 (320)
T ss_dssp EEEEETTSBHHHHHHHHHHHHCCCGGGCEET
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHeEEe
Confidence 5688889999999999999999999999985
No 222
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=35.36 E-value=45 Score=29.64 Aligned_cols=55 Identities=18% Similarity=0.152 Sum_probs=44.3
Q ss_pred EEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCC-------CCEEEEE
Q 003426 711 FLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED-------GDIICFQ 774 (821)
Q Consensus 711 ~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~-------GDIi~fQ 774 (821)
-+..+++|.+|...|..+.|+|++..-.+|. + ..++...|+....|++ |+.|..=
T Consensus 17 dve~sdTV~~lK~kI~~~~giPp~qQrLI~~------G---k~LeD~kTL~dy~I~~~ta~~q~~atl~Lv 78 (118)
T 4ajy_B 17 DAKESSTVFELKRIVEGILKRPPDEQRLYKD------D---QLLDDGKTLGECGFTSQTARPQAPATVGLA 78 (118)
T ss_dssp EEETTSBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTSBTTTTTCCGGGSBTTBCEEEEEE
T ss_pred EcCCCChHHHHHHHHHHHHCCCHHHeEEEeC------C---eECCCcCCHHHcCCCcCcccCCCCCEEEEE
Confidence 4678999999999999999999988766552 3 2467788999988988 9886543
No 223
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=34.98 E-value=80 Score=26.81 Aligned_cols=49 Identities=6% Similarity=0.173 Sum_probs=41.5
Q ss_pred EEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEe
Q 003426 691 LLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEE 742 (821)
Q Consensus 691 l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEE 742 (821)
+.-+..|+..+.++. +++|....++..+...|.+.-|+|++....+||-
T Consensus 12 rkvvHVf~~~~a~~h---~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg 60 (94)
T 4efo_A 12 RMVIHVFSLQQMTAH---KIYIHSYNTATIFHELVYKQTKIISSNQELIYEG 60 (94)
T ss_dssp EEEEEEEETTTTEEE---EEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETT
T ss_pred ceeEEEEEcccceEE---EEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 345566777777764 4899999999999999999999999999999986
No 224
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=34.89 E-value=41 Score=30.25 Aligned_cols=32 Identities=6% Similarity=0.201 Sum_probs=29.1
Q ss_pred EEEEecCCChHHHHHHHHHHcCCCCCCcEEEE
Q 003426 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELY 740 (821)
Q Consensus 709 ~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~ly 740 (821)
.+.|+.+.+|++++..|+++++++++..|-||
T Consensus 56 KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~ 87 (125)
T 3m95_A 56 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFF 87 (125)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTSCCEEE
T ss_pred EEEcCCCCEeeeehhhhHhhcCCCccccEEEE
Confidence 35689999999999999999999999988887
No 225
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=33.38 E-value=38 Score=32.86 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=31.4
Q ss_pred ceEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 593 ~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
...|+|.+++++..|.+..++..|+++..+||+.
T Consensus 68 eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLF 101 (207)
T 3tix_A 68 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLY 101 (207)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEE
T ss_pred EEEEEEccCChHHHHHHHHHHHhCCCcccEEEEE
Confidence 3478999999999999999999999999999986
No 226
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=32.85 E-value=35 Score=35.68 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=29.8
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
..+.|..++|+.+|+++|++..|++++++||..
T Consensus 246 ~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~ 278 (307)
T 3ai5_A 246 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 278 (307)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChHHEEEEe
Confidence 357888899999999999999999999999964
No 227
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=32.42 E-value=45 Score=29.71 Aligned_cols=31 Identities=10% Similarity=0.236 Sum_probs=28.7
Q ss_pred EEEecCCChHHHHHHHHHHcCCCCCCcEEEE
Q 003426 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELY 740 (821)
Q Consensus 710 ~~~~~~~~v~~l~~~i~~~~g~p~~t~l~ly 740 (821)
+.|+.+.+|++++..|+++++++++..|-||
T Consensus 52 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~ 82 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQLEAESALFVY 82 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTSCCEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCccceEEEE
Confidence 5689999999999999999999999988888
No 228
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=31.14 E-value=53 Score=28.76 Aligned_cols=32 Identities=6% Similarity=0.201 Sum_probs=28.4
Q ss_pred EEEEecCCChHHHHHHHHHHcCCCCCCcEEEE
Q 003426 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELY 740 (821)
Q Consensus 709 ~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~ly 740 (821)
.+.|+.+.++++++..|+++++++++..|-||
T Consensus 47 KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~ 78 (110)
T 2r2q_A 47 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFF 78 (110)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCTTSCCEEE
T ss_pred EEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEE
Confidence 35688899999999999999999999888775
No 229
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.24 E-value=47 Score=27.59 Aligned_cols=52 Identities=17% Similarity=0.148 Sum_probs=38.5
Q ss_pred EEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCC
Q 003426 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (821)
Q Consensus 710 ~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~ 767 (821)
+.|++..++++|+|.||+.-.+.++.-+.+- +..--|+++...++....|+-
T Consensus 25 vRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~------d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 25 VRVSPHASLQELAPIICSKCEFDPLHTLLLK------DYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp EEECSSSCTTTHHHHHHHHTTCCTTSEEEES------CSSCCCBCCTTSCHHHHTCSE
T ss_pred EEeCCCCcHHHHHHHHhhcccCChhhEEEec------CCCCCcccchhcchhhhhhhh
Confidence 4578999999999999999999887654432 222237788888887665553
No 230
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=30.18 E-value=1.8e+02 Score=24.02 Aligned_cols=72 Identities=14% Similarity=0.186 Sum_probs=50.2
Q ss_pred CcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCcc-CcccccccC
Q 003426 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKR-TSFRLSQIE 766 (821)
Q Consensus 688 ~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~-~t~~~~el~ 766 (821)
..+-||+|..+-. . -.+-|..+.+|.+|...|.+.. +..-.| +|. +. .++.. .++....|.
T Consensus 6 ~~m~i~Vk~~~g~--~----~~~~v~~~~TV~~LK~~i~~~~--~~~qrL-i~~------Gk---~L~D~~~tL~~y~i~ 67 (95)
T 1wia_A 6 SGINVRLKFLNDT--E----ELAVARPEDTVGTLKSKYFPGQ--ESQMKL-IYQ------GR---LLQDPARTLSSLNIT 67 (95)
T ss_dssp CSEEEEEEETTTE--E----EEEEECSSSBHHHHHHHHSSST--TTTCEE-EET------TE---ECCCSSCBTTTTTCC
T ss_pred CeEEEEEEeCCCC--E----EEEEECCCCcHHHHHHHHHhhC--cCcEEE-EEC------CE---EccCCcCCHHHcCCC
Confidence 4578888864322 2 1356789999999999999886 554444 331 32 34555 899999999
Q ss_pred CCCEEEEEeCC
Q 003426 767 DGDIICFQKSP 777 (821)
Q Consensus 767 ~GDIi~fQ~~~ 777 (821)
+|+.|.+-...
T Consensus 68 ~g~~i~l~~~~ 78 (95)
T 1wia_A 68 NNCVIHCHRSP 78 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCCEEEEEECC
Confidence 99999876544
No 231
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=30.06 E-value=52 Score=27.42 Aligned_cols=70 Identities=14% Similarity=0.047 Sum_probs=48.2
Q ss_pred EEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHH-HHHcCCCCCCcEEEEEeeccCccccccccCccCccccccc-CCC
Q 003426 691 LLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKL-NQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI-EDG 768 (821)
Q Consensus 691 l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i-~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el-~~G 768 (821)
-||+|-.+..+-++ .+-+..+++|.+|...| .++-|+|++..-.+|. +. .++...|++...+ .+|
T Consensus 3 qI~VKtl~g~~~~i----~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~------Gk---~L~D~~tL~~y~I~~~~ 69 (87)
T 2lxa_A 3 HLTLKKIQAPKFSI----EHDFSPSDTILQIKQHLISEEKASHISEIKLLLK------GK---VLHDNLFLSDLKVTPAN 69 (87)
T ss_dssp EEEEEECSSSCEEC----CEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEET------TE---ECCTTCBHHHHCCCGGG
T ss_pred EEEEEcCCCCEEEE----EEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEEC------CE---ECcCcCCHHHcCCCCCC
Confidence 45666544433222 11235889999999999 9999999988776662 32 3667788888888 677
Q ss_pred CEEEE
Q 003426 769 DIICF 773 (821)
Q Consensus 769 DIi~f 773 (821)
..|-.
T Consensus 70 stl~v 74 (87)
T 2lxa_A 70 STITV 74 (87)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 76654
No 232
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=30.02 E-value=59 Score=29.43 Aligned_cols=32 Identities=6% Similarity=0.238 Sum_probs=29.0
Q ss_pred EEEEecCCChHHHHHHHHHHcCCCCCCcEEE-E
Q 003426 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIEL-Y 740 (821)
Q Consensus 709 ~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~l-y 740 (821)
.+.|+.+.+|++++-.|+++++++++..|-| |
T Consensus 56 KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~ 88 (130)
T 2zjd_A 56 KFLVPDHVNMSELIKIIRRRLQLNANQAFFLLV 88 (130)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEE
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEE
Confidence 4678999999999999999999999998877 6
No 233
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=29.78 E-value=56 Score=32.06 Aligned_cols=46 Identities=24% Similarity=0.289 Sum_probs=36.9
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCCCCCCC
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNR 639 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~~~~~~n~~~r~~~ 639 (821)
..|+|.+++++..|.+..++..|++++.+||-.-..+-+.+-.|..
T Consensus 33 v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~ 78 (209)
T 3uf8_A 33 IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPED 78 (209)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTT
T ss_pred EEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHH
Confidence 4689999999999999999999999999999764444444444443
No 234
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=28.88 E-value=12 Score=40.12 Aligned_cols=74 Identities=18% Similarity=0.172 Sum_probs=0.0
Q ss_pred CCcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccC
Q 003426 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (821)
Q Consensus 687 ~~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~ 766 (821)
+..|.|.++ + ... .-++-|.++.+++.|+...+++.|++.++---+|+- ..|.++.|.+..++.
T Consensus 19 ~~~I~LKV~--~-~g~----~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG---------~rI~~~~TP~~L~ME 82 (360)
T 3ix6_A 19 ETHINLKVS--D-GSS----EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDG---------IRIQADQTPEDLDME 82 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEEe--c-CCc----EEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECC---------eECCCCCChHHcCCC
Confidence 456777776 3 222 336678899999999999999999987554444432 357788999999999
Q ss_pred CCCEEEEEeC
Q 003426 767 DGDIICFQKS 776 (821)
Q Consensus 767 ~GDIi~fQ~~ 776 (821)
|||+|=+-..
T Consensus 83 DgD~Idv~~~ 92 (360)
T 3ix6_A 83 DNDIIEAHRE 92 (360)
T ss_dssp ----------
T ss_pred ccchhhhhhc
Confidence 9999865443
No 235
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=28.85 E-value=30 Score=28.39 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=24.7
Q ss_pred EEEeeccccHHHHHHHHHHHhCCCCCceEE
Q 003426 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRF 624 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~ 624 (821)
.+.+..+.|+.+|+++|++.++++.+.+.+
T Consensus 17 Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l 46 (80)
T 2pjh_A 17 RITATKRETAATFLKKVAKEFGFQNNGFSV 46 (80)
T ss_dssp ECCCCSSCCHHHHHHHHHHHTCCCTTTCCC
T ss_pred EEEcCCcChHHHHHHHHHHHcCCCCCcceE
Confidence 455667899999999999999998776554
No 236
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=28.84 E-value=12 Score=36.37 Aligned_cols=32 Identities=19% Similarity=0.445 Sum_probs=0.0
Q ss_pred EEEeeccccHHHHHHHHHHHhCCCCCceEEEE
Q 003426 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (821)
Q Consensus 595 ~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~ 626 (821)
++.|..++|+.+|++.|++..|+|++++||..
T Consensus 14 tLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf 45 (189)
T 2xzm_9 14 IYTLEQGTSVLDLKSQISQDMGFEIDMMTLVN 45 (189)
T ss_dssp --------------------------------
T ss_pred EEEECCcChHHHHHHHHHHHhCcChhHEEEEe
Confidence 56777889999999999999999999999964
No 237
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=28.75 E-value=55 Score=29.01 Aligned_cols=32 Identities=9% Similarity=0.231 Sum_probs=28.4
Q ss_pred EEEEecCCChHHHHHHHHHHcCCCCCCcEEEE
Q 003426 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELY 740 (821)
Q Consensus 709 ~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~ly 740 (821)
.+.|+.+.++++++..|+++++++++..|-||
T Consensus 48 KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~ 79 (117)
T 1eo6_A 48 KYLVPSDITVAQFMWIIRKRIQLPSEKAIFLF 79 (117)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTCCTTSCCEEE
T ss_pred EEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEE
Confidence 35688899999999999999999999888775
No 238
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=28.43 E-value=54 Score=29.15 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=42.8
Q ss_pred EEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccC-------CCCEEEE
Q 003426 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE-------DGDIICF 773 (821)
Q Consensus 710 ~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~-------~GDIi~f 773 (821)
+-|..+.+|.+|...|..+.|+|++..-.+|. + ..++...|+....|+ .|..|+.
T Consensus 16 lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~------G---k~LeD~~TLsdy~I~~~~a~~q~~stL~L 77 (118)
T 2fnj_B 16 TDAKESSTVFELKRIVEGILKRPPEEQRLYKD------D---QLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTSBHHHHTCCTTTSBTTBCEEEEE
T ss_pred EEeCCcChHHHHHHHHHHHhCCCHHHeEEEEC------C---eECCCCCCHHHcCcccccccCCCCCEEEE
Confidence 45788999999999999999999987766552 2 246777888888888 6776554
No 239
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=25.94 E-value=2.9e+02 Score=23.12 Aligned_cols=61 Identities=13% Similarity=0.255 Sum_probs=41.0
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCCCCCCCCCCCcchhchHHHHHhhhccccccceeEEEEee
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVE 672 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 672 (821)
..+.|+.+.|+.+|...|.+.+++ +. +..++ |++.-|. .+.+|+++++.... + =.||+-..
T Consensus 25 ~KflV~~~~t~~~~v~~lRkrL~l--~a--lFlyV---Nn~f~Ps-------~d~~~~~Ly~~fk~--d--g~Lyv~Ys 85 (91)
T 3w1s_C 25 SVCKISMSQSFAMVILFLKRRLKM--DH--VYCYI---NNSFAPS-------PQQNIGELWMQFKT--N--DELIVSYC 85 (91)
T ss_dssp -EEEEETTSBHHHHHHHHHHHHTC--SC--CEEEE---TTTBCCC-------TTSBHHHHHHHHCB--T--TEEEEEEE
T ss_pred cEEEcCCCCCHHHHHHHHHHhhCC--ce--EEEEE---CCccCCC-------cccHHHHHHHHhCC--C--CEEEEEEe
Confidence 468999999999999999999998 33 44444 4433343 23589999876542 2 24666544
No 240
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.53 E-value=66 Score=27.58 Aligned_cols=70 Identities=11% Similarity=0.130 Sum_probs=50.7
Q ss_pred EEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHHHcCCCCCCcEEEEEeeccCccccccccCccCcccccccCCCC
Q 003426 690 ILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (821)
Q Consensus 690 ~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~~GD 769 (821)
+++|.+.+.-+ +. .+-|..+++|.+|...|.++-|+|++..-.+| ++++. ++...++....|+.|+
T Consensus 9 m~~~~vk~~Gk--~~----~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~----~~~gk----L~D~~tLs~~~I~~gs 74 (100)
T 2dzm_A 9 MLDFRVEYRDR--NV----DVVLEDTCTVGEIKQILENELQIPVSKMLLKG----WKTGD----VEDSTVLKSLHLPKNN 74 (100)
T ss_dssp EEEEEEECSSC--EE----EEEEETTSBHHHHHHHHHHHHCCCTTTCCEEC----CSSSC----CCTTSBHHHHCCCSEE
T ss_pred eEEEEEEeCCe--EE----EEEECCCCcHHHHHHHHHHHHCCChhHeEEEc----cCCCC----CCCcCCHHHcCCCCCC
Confidence 56777766432 22 24588999999999999999999998664322 13442 4567788888999998
Q ss_pred EEEE
Q 003426 770 IICF 773 (821)
Q Consensus 770 Ii~f 773 (821)
.|..
T Consensus 75 tL~l 78 (100)
T 2dzm_A 75 SLYV 78 (100)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
No 241
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=23.77 E-value=1.9e+02 Score=24.52 Aligned_cols=69 Identities=14% Similarity=0.250 Sum_probs=0.0
Q ss_pred cceEEEeeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCCCCCCCCCCCcchhchHHHHHhhhccccccceeEEEEe
Q 003426 592 KVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEV 671 (821)
Q Consensus 592 ~~~~~~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 671 (821)
+...+.|+.+.|+.+|...|.+.++++ .++.++ |++.-|. .+.+|+++++....... ||+..
T Consensus 28 ~k~KflV~~~~t~~~~~~~lRkrL~l~----alFlyv---n~~~~Ps-------~d~~m~~LY~~~kdDGf----Lyi~Y 89 (96)
T 1wz3_A 28 KQSKFKVSGSDKFANVIDFLRRQLHSD----SLFVYV---NSAFSPN-------PDESVIDLYNNFGFDGK----LVVNY 89 (96)
T ss_dssp SCCEEEEETTSBTHHHHHHHHHHHTCS----SCEEEE---EEEECCC-------TTSBHHHHHHHHCBTTB----EEEEE
T ss_pred cccEEEeCCCCcHHHHHHHHHHhcCCc----eEEEEE---CCcccCC-------hhhHHHHHHHHhCCCCE----EEEEE
Q ss_pred ecCCCCC
Q 003426 672 EFGPDLH 678 (821)
Q Consensus 672 ~~~~~~~ 678 (821)
...+.+.
T Consensus 90 s~~~afG 96 (96)
T 1wz3_A 90 ACSMAWG 96 (96)
T ss_dssp ESCSCC-
T ss_pred eCCcccC
No 242
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=23.70 E-value=2.4e+02 Score=25.25 Aligned_cols=69 Identities=12% Similarity=0.146 Sum_probs=49.4
Q ss_pred CcEEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHH-----HcCCCCC-CcEEEEEeeccCccccccccCccCccc
Q 003426 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQ-----MAGFDPD-EEIELYEEIKFEPCVMCEHLDKRTSFR 761 (821)
Q Consensus 688 ~~~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~-----~~g~p~~-t~l~lyEEik~~p~~i~e~i~~~~t~~ 761 (821)
+.+-|++|..+-. -++.+-+..+++|.+|...|.. .-|+|++ ..+.| | --+. .++...|++
T Consensus 15 ~~~~i~~kt~~G~-----~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrL---I--y~GK---~LeD~~TLs 81 (126)
T 1se9_A 15 NQLEIKFRLTDGS-----DIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKL---I--SAGK---VLENSKTVK 81 (126)
T ss_dssp CCEEEEEEETTSC-----EEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEE---E--ETTE---ECCTTSBGG
T ss_pred ccEEEEEEECCCC-----EEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEE---E--ECCe---ECcCCCcHH
Confidence 6688999888765 2456788999999999999954 4466653 22222 2 1243 377888999
Q ss_pred ccccCCCC
Q 003426 762 LSQIEDGD 769 (821)
Q Consensus 762 ~~el~~GD 769 (821)
...|+.||
T Consensus 82 dy~I~~~~ 89 (126)
T 1se9_A 82 DYRSPVSN 89 (126)
T ss_dssp GGSCCTTS
T ss_pred HcCCCcCC
Confidence 99999997
No 243
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=23.66 E-value=31 Score=30.04 Aligned_cols=27 Identities=11% Similarity=0.210 Sum_probs=23.7
Q ss_pred eEEEeeccccHHHHHHHHHHHhCCCCC
Q 003426 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQ 620 (821)
Q Consensus 594 ~~~~v~k~~~~~~~~~~v~~~~~~~~~ 620 (821)
..+.|..++|+.+|++.|++..+++++
T Consensus 20 ~~v~V~~~~TV~dLK~~I~~~~~i~~~ 46 (105)
T 1v2y_A 20 MPVVVVQNATVLDLKKAIQRYVQLKQE 46 (105)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCcc
Confidence 357888999999999999999998774
No 244
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=20.73 E-value=71 Score=34.28 Aligned_cols=67 Identities=10% Similarity=0.210 Sum_probs=48.0
Q ss_pred EEEEEEeecCCCCeEEEeEEEEEecCCChHHHHHHHHH---HcCCCCCCcEEEEEeeccCccccccccCccCcccccccC
Q 003426 690 ILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQ---MAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (821)
Q Consensus 690 ~l~flK~fd~~~~~l~~~g~~~~~~~~~v~~l~~~i~~---~~g~p~~t~l~lyEEik~~p~~i~e~i~~~~t~~~~el~ 766 (821)
+-||+|..+- +++ .+-|..+.+|.+|...|.+ +-|+|.+..-.+|. +. .++...|+....|.
T Consensus 8 M~I~VKtl~G--k~~----~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~------GK---~L~D~~tL~dygI~ 72 (368)
T 1oqy_A 8 VTITLKTLQQ--QTF----KIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA------GK---ILSDDVPIRDYRID 72 (368)
T ss_dssp CCEEEEETTT--EEE----EECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESS------SS---EECSSSBTTTTCCC
T ss_pred EEEEEEeCCC--CEE----EEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEEC------Ce---ecCCcCCHHHcCCC
Confidence 5677776532 222 2457788999999999999 56799876655542 33 35567899999999
Q ss_pred CCCEE
Q 003426 767 DGDII 771 (821)
Q Consensus 767 ~GDIi 771 (821)
+|+.|
T Consensus 73 ~gstI 77 (368)
T 1oqy_A 73 EKNFV 77 (368)
T ss_dssp TTSCE
T ss_pred CCCEE
Confidence 99977
No 245
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=20.18 E-value=1.2e+02 Score=26.36 Aligned_cols=49 Identities=12% Similarity=0.107 Sum_probs=0.0
Q ss_pred EeeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCCCCCCCCCCCcchhchHHHH
Q 003426 597 RVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQL 653 (821)
Q Consensus 597 ~v~k~~~~~~~~~~v~~~~~~~~~~~r~w~~~~~~n~~~r~~~~~~~~~~~~~~~~~ 653 (821)
|+..+.|+.++++.|....+.+...+.|. +.-|.+.+..++..+|+.++
T Consensus 29 rF~~~~tl~~v~~fV~~~~~~~~~~f~L~--------t~fPrk~l~~~d~~~TL~el 77 (109)
T 2dzk_A 29 QFPSDAPLEEARQFAAQTVGNTYGNFSLA--------TMFPRREFTREDYKRRLLDL 77 (109)
T ss_dssp EECTTSBHHHHHHHHHHHHTTSSCSCEEE--------CSSSCCBCCTTTTTSBTGGG
T ss_pred EeCCCCCHHHHHHHHHhccCCCCCceEEE--------cCCCCcCCcccccCCCHHHC
Done!