Query 003428
Match_columns 820
No_of_seqs 469 out of 2269
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 23:14:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003428.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003428hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0317 SpoT Guanosine polypho 100.0 1E-162 2E-167 1401.5 57.5 621 125-819 7-650 (701)
2 PRK10872 relA (p)ppGpp synthet 100.0 4E-158 8E-163 1384.1 54.2 630 132-819 18-689 (743)
3 PRK11092 bifunctional (p)ppGpp 100.0 9E-156 2E-160 1368.0 59.7 618 131-819 4-649 (702)
4 TIGR00691 spoT_relA (p)ppGpp s 100.0 6E-146 1E-150 1288.2 55.9 601 152-819 1-633 (683)
5 KOG1157 Predicted guanosine po 100.0 6.2E-78 1.3E-82 643.1 23.6 426 143-625 71-524 (543)
6 PF13328 HD_4: HD domain; PDB: 100.0 2.1E-38 4.6E-43 311.3 2.5 153 152-310 1-153 (153)
7 PF04607 RelA_SpoT: Region fou 99.9 3.7E-26 8E-31 213.4 10.2 110 375-498 1-113 (115)
8 cd05399 NT_Rel-Spo_like Nucleo 99.9 1E-25 2.2E-30 215.1 11.8 107 370-488 20-129 (129)
9 COG2357 PpGpp synthetase catal 99.9 2.4E-24 5.3E-29 221.2 11.7 116 371-498 53-178 (231)
10 PF02824 TGS: TGS domain; Int 99.7 2.8E-18 6.1E-23 143.6 5.2 60 565-624 1-60 (60)
11 cd01666 TGS_DRG_C TGS_DRG_C: 99.3 4.5E-12 9.7E-17 110.9 5.0 60 565-624 2-75 (75)
12 cd01669 TGS_Ygr210_C TGS_Ygr21 99.2 1.7E-11 3.8E-16 107.5 4.3 52 572-624 22-76 (76)
13 PRK00413 thrS threonyl-tRNA sy 99.1 1.6E-10 3.5E-15 137.9 10.9 120 564-710 1-127 (638)
14 cd01668 TGS_RelA_SpoT TGS_RelA 99.0 1.4E-09 3E-14 89.7 7.1 60 565-624 1-60 (60)
15 PLN02908 threonyl-tRNA synthet 98.9 1.2E-08 2.6E-13 122.9 14.1 145 525-710 25-180 (686)
16 PRK12444 threonyl-tRNA synthet 98.9 6.5E-09 1.4E-13 124.4 11.2 122 562-710 3-131 (639)
17 cd01616 TGS The TGS domain, na 98.6 1.2E-07 2.5E-12 76.5 6.6 59 566-624 2-60 (60)
18 cd04938 TGS_Obg-like TGS_Obg-l 98.4 2.7E-07 5.8E-12 81.2 5.4 52 573-624 24-76 (76)
19 cd01667 TGS_ThrRS_N TGS _ThrRS 98.4 5.4E-07 1.2E-11 73.1 6.7 59 566-624 2-60 (61)
20 PRK09602 translation-associate 98.4 2.6E-07 5.5E-12 104.8 4.8 63 563-625 318-395 (396)
21 TIGR03276 Phn-HD phosphonate d 98.0 1.3E-05 2.9E-10 81.2 7.5 73 160-232 13-103 (179)
22 KOG1637 Threonyl-tRNA syntheta 97.9 2.3E-06 5.1E-11 95.9 0.3 107 569-705 5-117 (560)
23 COG1163 DRG Predicted GTPase [ 97.4 0.00012 2.7E-09 79.9 4.1 62 563-624 289-364 (365)
24 PRK05659 sulfur carrier protei 97.3 0.00063 1.4E-08 57.8 6.8 54 570-625 5-62 (66)
25 PRK06437 hypothetical protein; 97.2 0.0011 2.3E-08 57.1 7.2 61 563-625 3-63 (67)
26 PTZ00258 GTP-binding protein; 97.2 0.00053 1.2E-08 77.8 5.8 62 564-625 304-387 (390)
27 cd00565 ThiS ThiaminS ubiquiti 97.1 0.0013 2.8E-08 55.9 6.2 53 571-625 5-61 (65)
28 COG0441 ThrS Threonyl-tRNA syn 97.0 0.0007 1.5E-08 80.2 5.3 82 597-714 1-87 (589)
29 PRK07440 hypothetical protein; 96.9 0.0031 6.7E-08 54.7 6.6 53 571-625 10-66 (70)
30 PRK06944 sulfur carrier protei 96.8 0.0031 6.8E-08 53.3 6.4 52 571-625 6-61 (65)
31 PRK01777 hypothetical protein; 96.8 0.0021 4.6E-08 59.1 5.6 54 573-626 19-77 (95)
32 TIGR01683 thiS thiamine biosyn 96.7 0.0053 1.1E-07 52.1 6.7 53 571-625 4-60 (64)
33 PRK08364 sulfur carrier protei 96.6 0.0057 1.2E-07 52.9 6.4 50 574-625 17-66 (70)
34 PRK07696 sulfur carrier protei 96.6 0.0053 1.1E-07 52.8 6.1 53 571-625 6-63 (67)
35 PRK08053 sulfur carrier protei 96.5 0.008 1.7E-07 51.4 6.8 53 571-625 6-62 (66)
36 COG2104 ThiS Sulfur transfer p 96.2 0.012 2.7E-07 50.9 6.3 52 572-625 9-64 (68)
37 PRK06488 sulfur carrier protei 96.0 0.018 3.9E-07 48.9 6.2 52 571-625 6-61 (65)
38 PLN02799 Molybdopterin synthas 95.6 0.022 4.8E-07 50.4 5.2 53 572-624 20-77 (82)
39 PRK09601 GTP-binding protein Y 95.3 0.023 5E-07 64.1 5.5 61 564-624 280-362 (364)
40 PF03658 Ub-RnfH: RnfH family 95.3 0.012 2.7E-07 52.9 2.6 52 574-625 17-73 (84)
41 PRK06083 sulfur carrier protei 95.0 0.054 1.2E-06 48.9 5.8 54 570-625 23-80 (84)
42 PRK05863 sulfur carrier protei 94.8 0.059 1.3E-06 46.0 5.4 53 571-625 6-61 (65)
43 cd00754 MoaD Ubiquitin domain 94.5 0.066 1.4E-06 46.7 5.2 53 573-625 18-76 (80)
44 PF14451 Ub-Mut7C: Mut7-C ubiq 94.4 0.086 1.9E-06 47.3 5.6 48 574-625 26-76 (81)
45 PF13291 ACT_4: ACT domain; PD 94.1 0.052 1.1E-06 47.5 3.6 27 793-819 2-29 (80)
46 PRK11840 bifunctional sulfur c 93.8 0.13 2.8E-06 57.0 6.7 53 571-625 6-62 (326)
47 PF02597 ThiS: ThiS family; I 93.5 0.099 2.1E-06 45.1 4.2 53 573-625 14-73 (77)
48 PRK14707 hypothetical protein; 91.1 1 2.2E-05 59.7 10.3 153 321-499 2263-2424(2710)
49 TIGR01682 moaD molybdopterin c 90.6 0.64 1.4E-05 40.9 5.9 52 573-624 18-75 (80)
50 PF06071 YchF-GTPase_C: Protei 89.5 0.36 7.8E-06 43.6 3.4 52 573-624 13-83 (84)
51 COG2914 Uncharacterized protei 87.6 0.8 1.7E-05 42.1 4.3 52 574-625 20-76 (99)
52 PLN02837 threonine-tRNA ligase 87.0 0.98 2.1E-05 54.7 6.0 68 616-710 28-101 (614)
53 cd04867 TGS_YchF_C TGS_YchF_C: 83.1 1.4 3E-05 39.7 3.6 51 573-623 13-82 (83)
54 TIGR01687 moaD_arch MoaD famil 81.6 3 6.5E-05 37.2 5.3 50 574-624 19-83 (88)
55 PRK12703 tRNA 2'-O-methylase; 80.6 6.6 0.00014 44.3 8.7 58 171-228 188-257 (339)
56 PF01842 ACT: ACT domain; Int 79.3 2.1 4.5E-05 35.1 3.2 22 798-819 2-23 (66)
57 smart00471 HDc Metal dependent 78.3 1.2 2.5E-05 40.0 1.5 37 168-204 2-44 (124)
58 PRK11130 moaD molybdopterin sy 73.4 8.6 0.00019 34.0 5.7 46 579-624 24-76 (81)
59 cd04895 ACT_ACR_1 ACT domain-c 72.0 3.3 7.2E-05 36.4 2.7 22 798-819 3-24 (72)
60 PF01966 HD: HD domain; Inter 71.9 1.6 3.5E-05 39.6 0.7 33 172-204 2-41 (122)
61 cd04897 ACT_ACR_3 ACT domain-c 69.9 4.6 9.9E-05 35.8 3.1 22 798-819 3-24 (75)
62 COG1418 Predicted HD superfami 69.2 4.5 9.8E-05 42.9 3.5 38 167-204 33-75 (222)
63 COG4341 Predicted HD phosphohy 68.8 4.6 9.9E-05 40.9 3.2 41 159-200 18-60 (186)
64 PF13740 ACT_6: ACT domain; PD 67.3 5.5 0.00012 34.7 3.1 22 798-819 4-25 (76)
65 PRK11589 gcvR glycine cleavage 64.1 5.8 0.00013 41.2 3.0 23 798-820 97-119 (190)
66 PRK09169 hypothetical protein; 64.1 70 0.0015 44.1 13.2 110 372-499 1915-2034(2316)
67 cd04899 ACT_ACR-UUR-like_2 C-t 63.7 6.2 0.00014 33.0 2.7 21 799-819 3-23 (70)
68 TIGR02988 YaaA_near_RecF S4 do 63.6 7.9 0.00017 32.1 3.2 23 600-622 35-58 (59)
69 cd04900 ACT_UUR-like_1 ACT dom 63.3 7.3 0.00016 33.5 3.1 22 798-819 3-24 (73)
70 cd00077 HDc Metal dependent ph 62.1 4.4 9.4E-05 36.9 1.6 35 170-204 2-44 (145)
71 COG2716 GcvR Glycine cleavage 61.3 8.9 0.00019 39.2 3.6 27 793-819 88-115 (176)
72 PRK13480 3'-5' exoribonuclease 60.9 18 0.00039 40.4 6.3 75 124-201 106-196 (314)
73 COG0012 Predicted GTPase, prob 60.3 1.9 4.1E-05 48.8 -1.4 57 563-622 297-368 (372)
74 KOG1487 GTP-binding protein DR 59.7 3.8 8.2E-05 44.5 0.8 60 565-624 283-357 (358)
75 PRK12305 thrS threonyl-tRNA sy 59.2 9.9 0.00021 45.6 4.3 57 646-710 2-65 (575)
76 smart00363 S4 S4 RNA-binding d 59.0 9.1 0.0002 30.0 2.7 24 600-623 27-51 (60)
77 KOG1486 GTP-binding protein DR 57.9 10 0.00022 41.2 3.6 52 573-624 305-363 (364)
78 PRK14707 hypothetical protein; 56.3 31 0.00067 46.9 7.9 103 378-498 2544-2654(2710)
79 TIGR03401 cyanamide_fam HD dom 55.9 17 0.00036 38.9 4.8 50 145-201 37-95 (228)
80 COG1977 MoaD Molybdopterin con 55.3 14 0.00031 33.1 3.6 29 596-624 51-79 (84)
81 PRK07334 threonine dehydratase 55.0 9.5 0.00021 43.8 3.0 27 793-819 322-349 (403)
82 cd04873 ACT_UUR-ACR-like ACT d 54.4 13 0.00027 30.8 3.0 22 798-819 2-23 (70)
83 PF01479 S4: S4 domain; Inter 54.1 10 0.00022 29.9 2.1 21 600-620 27-48 (48)
84 cd04878 ACT_AHAS N-terminal AC 52.6 15 0.00032 30.1 3.1 22 798-819 2-23 (72)
85 cd01764 Urm1 Urm1-like ubuitin 51.4 31 0.00068 31.7 5.2 46 579-624 27-89 (94)
86 cd04901 ACT_3PGDH C-terminal A 51.2 14 0.0003 30.7 2.7 21 799-819 2-22 (69)
87 TIGR00092 GTP-binding protein 50.9 14 0.0003 42.3 3.4 61 564-624 284-366 (368)
88 cd04926 ACT_ACR_4 C-terminal 48.3 18 0.00039 31.1 3.0 22 798-819 3-24 (72)
89 TIGR00277 HDIG uncharacterized 47.2 20 0.00043 30.2 3.1 33 170-202 4-41 (80)
90 COG2316 Predicted hydrolase (H 46.3 24 0.00051 36.0 3.8 58 169-226 46-117 (212)
91 PRK07569 bidirectional hydroge 46.0 31 0.00067 36.7 5.0 55 568-622 6-76 (234)
92 PF13510 Fer2_4: 2Fe-2S iron-s 45.8 16 0.00035 32.6 2.4 55 567-622 5-79 (82)
93 cd00165 S4 S4/Hsp/ tRNA synthe 45.4 23 0.00049 28.6 3.1 24 600-623 27-51 (70)
94 PRK00106 hypothetical protein; 44.4 19 0.00042 43.0 3.4 36 167-202 347-387 (535)
95 PRK05007 PII uridylyl-transfer 44.1 21 0.00045 45.4 3.8 36 784-819 796-831 (884)
96 TIGR00488 putative HD superfam 43.4 19 0.00041 35.8 2.8 32 171-202 9-45 (158)
97 cd01809 Scythe_N Ubiquitin-lik 43.4 72 0.0016 26.7 6.0 61 564-624 2-71 (72)
98 COG1713 Predicted HD superfami 41.8 23 0.00049 36.8 3.0 35 171-205 18-57 (187)
99 PF14453 ThiS-like: ThiS-like 41.4 50 0.0011 27.9 4.5 50 571-624 6-55 (57)
100 COG1188 Ribosome-associated he 41.3 28 0.0006 32.7 3.2 27 600-626 35-61 (100)
101 PRK08577 hypothetical protein; 41.0 25 0.00053 34.2 3.0 23 797-819 57-79 (136)
102 PF00498 FHA: FHA domain; Int 40.9 18 0.00039 30.2 1.8 23 600-622 43-67 (68)
103 PRK01759 glnD PII uridylyl-tra 40.1 27 0.00058 44.2 3.9 36 784-819 771-806 (854)
104 COG1078 HD superfamily phospho 39.3 15 0.00033 42.7 1.4 52 144-201 27-96 (421)
105 TIGR00384 dhsB succinate dehyd 38.1 30 0.00065 36.4 3.4 45 575-619 19-78 (220)
106 TIGR00295 conserved hypothetic 38.0 31 0.00068 34.7 3.4 58 169-226 12-86 (164)
107 cd01806 Nedd8 Nebb8-like ubiq 37.6 81 0.0018 26.7 5.4 62 564-625 2-72 (76)
108 PRK10119 putative hydrolase; P 37.3 62 0.0013 34.7 5.6 51 149-202 7-62 (231)
109 cd04874 ACT_Af1403 N-terminal 37.0 32 0.00069 28.2 2.7 22 798-819 2-23 (72)
110 COG2844 GlnD UTP:GlnB (protein 36.8 34 0.00073 42.7 3.9 36 783-818 778-813 (867)
111 TIGR01693 UTase_glnD [Protein- 35.7 35 0.00076 43.1 4.0 35 785-819 768-802 (850)
112 PRK10885 cca multifunctional t 35.1 1.3E+02 0.0029 34.9 8.2 82 121-202 168-259 (409)
113 PF05153 DUF706: Family of unk 34.9 49 0.0011 35.8 4.2 52 149-200 41-93 (253)
114 PRK12704 phosphodiesterase; Pr 34.8 37 0.0008 40.6 3.8 35 167-201 332-371 (520)
115 cd04928 ACT_TyrKc Uncharacteri 34.4 42 0.0009 29.3 3.0 22 798-819 3-24 (68)
116 PRK12705 hypothetical protein; 34.0 36 0.00079 40.5 3.5 36 167-202 320-360 (508)
117 PF11976 Rad60-SLD: Ubiquitin- 32.4 72 0.0016 27.0 4.3 60 564-623 2-71 (72)
118 TIGR03319 YmdA_YtgF conserved 31.8 42 0.00091 40.1 3.6 34 168-201 327-365 (514)
119 cd04908 ACT_Bt0572_1 N-termina 31.7 49 0.0011 27.6 3.1 22 798-819 3-24 (66)
120 PRK05092 PII uridylyl-transfer 29.6 50 0.0011 42.2 4.0 35 785-819 832-866 (931)
121 cd04889 ACT_PDH-BS-like C-term 28.5 45 0.00098 26.7 2.2 21 799-819 1-21 (56)
122 PF10584 Proteasome_A_N: Prote 27.5 15 0.00034 25.5 -0.6 16 562-577 2-17 (23)
123 PTZ00305 NADH:ubiquinone oxido 27.3 93 0.002 34.6 5.0 51 571-621 74-141 (297)
124 cd01803 Ubiquitin Ubiquitin. U 27.3 2.1E+02 0.0045 24.2 6.3 61 565-625 3-72 (76)
125 PRK04374 PII uridylyl-transfer 27.2 59 0.0013 41.4 3.9 35 785-819 785-819 (869)
126 PRK01286 deoxyguanosinetriphos 26.8 83 0.0018 35.7 4.6 30 172-201 64-98 (336)
127 cd04909 ACT_PDH-BS C-terminal 26.6 62 0.0013 27.0 2.8 22 798-819 3-24 (69)
128 PRK03381 PII uridylyl-transfer 26.4 59 0.0013 40.8 3.7 35 785-819 696-730 (774)
129 PRK00275 glnD PII uridylyl-tra 25.7 65 0.0014 41.2 3.9 35 785-819 803-837 (895)
130 PRK11507 ribosome-associated p 25.7 76 0.0016 28.0 3.2 23 600-622 38-61 (70)
131 PRK07152 nadD putative nicotin 25.5 47 0.001 37.3 2.5 34 169-202 195-233 (342)
132 cd01805 RAD23_N Ubiquitin-like 25.3 1.5E+02 0.0032 25.3 5.0 62 564-625 2-74 (77)
133 PRK05950 sdhB succinate dehydr 25.3 68 0.0015 34.1 3.4 51 574-624 21-88 (232)
134 KOG1573 Aldehyde reductase [Ge 23.9 1.2E+02 0.0026 31.0 4.6 33 168-200 94-127 (204)
135 COG1034 NuoG NADH dehydrogenas 23.2 94 0.002 38.6 4.5 51 571-621 7-73 (693)
136 PF12791 RsgI_N: Anti-sigma fa 22.7 59 0.0013 26.6 1.9 22 559-580 2-23 (56)
137 cd02116 ACT ACT domains are co 22.1 71 0.0015 23.4 2.1 21 799-819 1-21 (60)
138 PF04031 Las1: Las1-like ; In 22.0 2.6E+02 0.0057 28.1 6.7 72 144-231 22-95 (154)
139 PRK04435 hypothetical protein; 22.0 1.2E+02 0.0026 30.1 4.3 26 794-819 67-92 (147)
140 cd01763 Sumo Small ubiquitin-r 21.5 3.9E+02 0.0085 23.8 7.1 62 564-625 13-83 (87)
141 PRK05327 rpsD 30S ribosomal pr 21.0 92 0.002 32.7 3.4 24 600-623 119-143 (203)
142 PF12917 HD_2: HD containing h 20.9 49 0.0011 35.1 1.3 101 169-278 28-142 (215)
143 PRK03059 PII uridylyl-transfer 20.7 90 0.002 39.7 3.8 35 785-819 775-809 (856)
No 1
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=100.00 E-value=1.1e-162 Score=1401.48 Aligned_cols=621 Identities=38% Similarity=0.599 Sum_probs=557.6
Q ss_pred CChHHHHHhHhhhhcCCChhhHHHHHHHHHHHHHhhcCCccccCCcccchHHHHHHHHHHcCCCHHHHHHHhhccccccC
Q 003428 125 DSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDT 204 (820)
Q Consensus 125 ~~~~~~~~~l~~~~~~~~~~~~~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILaelglD~~tIiAALLHDvVEDT 204 (820)
.+.+++.+.+. .+.++.+.+ +.+|+.||.++|.||+|+||+|||.||++||.||+++++|.++++||||||++|||
T Consensus 7 ~~~~~~~~~~~---~~~~~~~~~-l~kA~~~A~q~H~~q~r~SGePYi~Hpl~Va~iLael~~d~~tl~AaLLHD~vEDt 82 (701)
T COG0317 7 VELEELLDSLA---TYLPPVDIE-LKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHMDMETLAAALLHDTIEDT 82 (701)
T ss_pred ccHHHHHHHHH---hcCChHHHH-HHHHHHHHHHHhHhhcCcCCCchhhCHHHHHHHHHHccCCHHHHHHHHccchHhcC
Confidence 34444444443 455555566 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhChHHHHHHhhhcccccccccccccCCcchhhhhHHHHHHHHHhccCCceEEeeeehhhhhccccccCC
Q 003428 205 NVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHM 284 (820)
Q Consensus 205 ~~~T~eeI~~~FG~~Va~LV~glTkvs~l~~~~~~~~~~~~~~~qae~~RkmLLam~~D~RViLIKLADRLhNMRtL~~~ 284 (820)
+ +|.++|++.||++|++||+||||+.+++++.. ....|+||+|+||+||++|+||+|||||||||||||+..+
T Consensus 83 ~-~t~e~i~~~FG~eVa~LV~GvTkl~~i~~~~~------~~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~~~ 155 (701)
T COG0317 83 P-VTEELIEEIFGKEVAKLVEGVTKLKKIGQLSS------EEELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNL 155 (701)
T ss_pred C-CCHHHHHHHHCHHHHHHHhhHHHhhhhhccCc------cchhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCccC
Confidence 9 89999999999999999999999998753321 2345899999999999999999999999999999999998
Q ss_pred CCcchhhHHHHHHHHHHHHHHHhCHHHHHHHHhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 003428 285 PPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFL 364 (820)
Q Consensus 285 p~~kq~~iA~ETl~iYaPLA~RLGl~~iK~ELEDLsf~~l~P~~y~~i~~~l~~~r~~~e~~i~~~~~~L~~~L~~~~~l 364 (820)
+++||+++|+||++|||||||||||+++|||||||||+|++|++|+.|++.|.+.+.+|++++++|...|++.|.+.
T Consensus 156 ~~ek~~riakETl~IyAPLA~RLGi~~iK~ELEDlsFr~l~P~~Y~~I~~~l~e~r~~re~~i~~~~~~l~~~L~~~--- 232 (701)
T COG0317 156 DEEKRRRIARETLDIYAPLAHRLGIGQIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQYIENVVSELREELKAA--- 232 (701)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred ccccceeEEEEEecChHHHHHHHHhcCCCCCccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccccccccc
Q 003428 365 DLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMK 444 (820)
Q Consensus 365 ~~~~i~~~V~~R~K~~ySI~~Km~rk~~~~~eI~Di~giRIIv~~~~c~~~~~~~~~~~dCY~vlg~Ih~~~~pip~r~k 444 (820)
|+.++|.||+||+||||+||++|+..|++|+|++||||||++. .|||++||+||.+|+|+|+|||
T Consensus 233 ---gi~a~v~gR~KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~~~------------~dCY~~LGiVH~~~kp~PgrFK 297 (701)
T COG0317 233 ---GIKAEVSGRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDTI------------PDCYTALGIVHTLWKPIPGEFD 297 (701)
T ss_pred ---CCeEEEEcCCCcccHHHHHHHHcccChhhhhhheeEEEEECCh------------HHHHHHHHHHHhcCcCCCCccc
Confidence 7899999999999999999999999999999999999999864 6999999999999999999999
Q ss_pred ccccCCCCCCcceeEEEEeccCCCCceeEEEEEechHHHHHHHHHHHhhccCcccccccccCCCCCCCCCCCcccccchh
Q 003428 445 DYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNA 524 (820)
Q Consensus 445 DyIa~PK~NGYqSLHttV~~~~~~~~~~vEVQIRT~~Mh~~AE~G~aahwkyK~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (820)
||||+||+||||||||||+++.| .++||||||++||..||+|+||||+||++. .
T Consensus 298 DYIA~PK~NgYQSlHTtv~gp~g---~~vEvQIRT~eMh~~AE~GvAAHW~YKe~~-----------------------~ 351 (701)
T COG0317 298 DYIANPKPNGYQSLHTTVIGPEG---KPVEVQIRTKEMHEIAELGVAAHWRYKEGG-----------------------S 351 (701)
T ss_pred cccccCCCCCCceeEEEEECCCC---ceEEEEEecHHHHHHHhhhHHHHhHhhcCC-----------------------c
Confidence 99999999999999999997654 799999999999999999999999999841 1
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCchhhhhhhcccccCCCeeeecCCCceEecCCCCcHhHHHhhcccccccceEEEEEC
Q 003428 525 NIALRISWLNAIREWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVN 604 (820)
Q Consensus 525 ~~~~~~~wl~~l~e~~~~~~~~~~~~ef~~~~k~dL~~~~I~VftP~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVN 604 (820)
.....+.||++|++||++.. ++.||++.+|.|||.|+||||||||++++||.||||+||||+|||++|++|+|||||
T Consensus 352 ~~~~~~~Wlr~lle~q~~~~---d~~ef~e~~k~dlf~d~VyvfTPkG~vi~LP~GatplDFAY~vHt~iG~~c~gAkVn 428 (701)
T COG0317 352 AYEEKIAWLRQLLEWQEESA---DSGEFLEQLKSDLFPDRVYVFTPKGKVIDLPKGATPLDFAYAVHTDIGHRCIGAKVN 428 (701)
T ss_pred hhhHHHHHHHHHHHHHHhcC---CcHHHHHHHhhcccCceEEEECCCCCEEeCCCCCcchhhhhhhhchhcceeeEEEEC
Confidence 12356799999999999862 368999999999999999999999999999999999999999999999999999999
Q ss_pred CEecCCCccCCCCCeEEEEeccCCCCCCcCCCChhHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 003428 605 GNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITADTVGDFVADSGEES 684 (820)
Q Consensus 605 G~~v~l~~~L~~gd~VeIlT~~~~~~~~~~~p~~~WL~~v~T~~Ar~~ir~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 684 (820)
|++|||+++|++||+|||+|+++. .|+++||+||+|++||+|||+|||++.++.+...|+++|++.|...++.-
T Consensus 429 G~ivpl~~~Lk~Gd~VEIit~k~~------~Ps~~Wl~~v~t~kAR~kIr~~~k~~~re~~i~~G~~lLe~~l~~~g~~~ 502 (701)
T COG0317 429 GRIVPLTTKLQTGDQVEIITSKHA------GPSRDWLNFVVTSRARAKIRAWFKKQDRDENVEAGRELLEKELSRLGLPK 502 (701)
T ss_pred CEEeccceecCCCCEEEEEeCCCC------CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCh
Confidence 999999999999999999999864 59999999999999999999999999999999999999999999766621
Q ss_pred ------------ccccccccccCCchhHHHHHHHHhhcCCCCCCCcccccCCC-CCCCCCeecCcCCcccc------cc-
Q 003428 685 ------------EVEDLSDGSKQDKPLWEKILMNVVQMSSPVRNSKAVCSDDN-ASLWAPKVNGKHNKRVH------YV- 744 (820)
Q Consensus 685 ------------~~~~fy~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~V~G~~n~~~~------PI- 744 (820)
+.++||.+|+.++-....+.+.+.+..+.. ... ..++ .....+.|.|.++..++ ||
T Consensus 503 ~~~~~l~~~~~~~~edl~a~ig~g~~~~~~v~~~l~~~~~~~--~~~--~~~~~~~~~~~~v~G~~~l~~~~a~CC~Pip 578 (701)
T COG0317 503 ELEELLEKLNFKTVEDLYAAVGAGDIRLNHVVNALQKLNEPP--LEK--LSRKSIGKGGVLVEGVGNLLTHLAKCCQPVP 578 (701)
T ss_pred HHHHHHHHhCCCCHHHHHHHhccCCCCHHHHHHHHHhccccc--hhh--hhccccCCCceEEeccCCceeEeecCCCCCC
Confidence 228999999876555555555544211111 001 0110 01467999999998765 99
Q ss_pred CCcceeeeecCCCCee--eecCCChhhhhhhCCCcccccCCCceecccCCCceee-EEEEEEecccchHHHHHHHhhc
Q 003428 745 GSKAEGELSSQENSFA--KMMHANVPMYKEVLPGLESWQASKIATWHNLEGHSIQ-WFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 745 GD~i~G~it~~g~gi~--r~~C~n~~~l~~~~~~rii~~~~~~a~W~~~~~~sf~-~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
||+|+|||| +|+||+ |.+|||+.++....|+|++ +++|+......|. .|.|.+.||.|+|++|+++|++
T Consensus 579 GD~IvG~it-~g~Gi~iHr~dC~~~~~~~~~~per~i-----~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~ 650 (701)
T COG0317 579 GDPIVGYIT-KGRGISIHRQDCPNFLQLAGHAPERVI-----DVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLAN 650 (701)
T ss_pred CCcEEEEEe-cCCcEEEehhcChhHHHhhhcCcceEE-----EEEecCCCCcceEEEEEEEEccccchHHHHHHHHHh
Confidence 999999998 999998 9999999999998899999 9999999888999 9999999999999999999986
No 2
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=100.00 E-value=3.6e-158 Score=1384.10 Aligned_cols=630 Identities=26% Similarity=0.437 Sum_probs=550.4
Q ss_pred HhHhhhh-cCCChhhHHHHHHHHHHHHHhhcCCccccCCcccchHHHHHHHHHHcCCCHHHHHHHhhccccccCCCCCHH
Q 003428 132 EDLRPTI-SYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFE 210 (820)
Q Consensus 132 ~~l~~~~-~~~~~~~~~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILaelglD~~tIiAALLHDvVEDT~~~T~e 210 (820)
+.|...+ .|+ +.+.+.|++|+.||.++|.| |+||+|||.||++||.||++++||.++|+||||||+||||+ +|.+
T Consensus 18 ~~l~~~~~~~~-~~~~~~i~~A~~~a~~~H~g--r~sGepyi~Hpl~vA~iLa~~~~D~~ti~AaLLHD~vedt~-~t~e 93 (743)
T PRK10872 18 DKWIASLGITS-QQSCERLAETWAYCLQQTQG--HPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANV-VSED 93 (743)
T ss_pred HHHHHHHHhhh-HHHHHHHHHHHHHHHHhccC--CCCCChhhhhHHHHHHHHHHcCCCHHHHHHHHhhhhHhcCC-CCHH
Confidence 3444444 577 88999999999999999999 89999999999999999999999999999999999999999 8999
Q ss_pred HHHHHhChHHHHHHhhhcccccccccccccCCcchhhhhHHHHHHHHHhccCCceEEeeeehhhhhccccccCCCCcchh
Q 003428 211 RIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQS 290 (820)
Q Consensus 211 eI~~~FG~~Va~LV~glTkvs~l~~~~~~~~~~~~~~~qae~~RkmLLam~~D~RViLIKLADRLhNMRtL~~~p~~kq~ 290 (820)
+|++.||++|+.||+||||++++....... ..+....|+||||||||||++|+||+||||||||||||||..+|++||+
T Consensus 94 ~i~~~FG~~Va~lVdgvtKl~~i~~~~~~~-~~~~~~~qae~~RKmllam~~DiRVilIKLADRLhnmrTl~~~~~~kq~ 172 (743)
T PRK10872 94 VLRESVGKSIVNLIHGVRDMDAIRQLKATH-NDSVSSEQVDNVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEDERV 172 (743)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHhhhhhccc-ccchhHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhhcCChHHHH
Confidence 999999999999999999998864211100 0123456999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhCHHHHHHHHhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccce
Q 003428 291 SIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVK 370 (820)
Q Consensus 291 ~iA~ETl~iYaPLA~RLGl~~iK~ELEDLsf~~l~P~~y~~i~~~l~~~r~~~e~~i~~~~~~L~~~L~~~~~l~~~~i~ 370 (820)
+||+||++||||||||||||+||||||||||+||+|++|+.|++.|.+.+.+|+.+++.+++.|++.|.+. |++
T Consensus 173 ~iA~ETl~IyAPlA~RLGi~~iK~ELEDL~f~~l~P~~Y~~i~~~l~~~~~~r~~~i~~~~~~l~~~L~~~------~i~ 246 (743)
T PRK10872 173 LAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPDEYKRIAKLLHERRIDREHYIEEFVGHLRAEMKAE------GVK 246 (743)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999654 789
Q ss_pred eEEEEEecChHHHHHHHHhcCCCCCccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhcccccccccccccccCC
Q 003428 371 TEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATP 450 (820)
Q Consensus 371 ~~V~~R~K~~ySI~~Km~rk~~~~~eI~Di~giRIIv~~~~c~~~~~~~~~~~dCY~vlg~Ih~~~~pip~r~kDyIa~P 450 (820)
++|.||+||+||||+||++++.+|++|+|++|+||||++ ..+||++||+||++|+|+|++|||||++|
T Consensus 247 ~~v~gR~K~~ySI~~Km~~k~~~~~~i~Di~a~RIIv~~------------~~dCY~vLg~ih~~~~pip~~fkDYIa~P 314 (743)
T PRK10872 247 AEVYGRPKHIYSIWRKMQKKSLAFDELFDVRAVRIVAER------------LQDCYAALGIVHTHYRHLPDEFDDYVANP 314 (743)
T ss_pred eEEEeecCCHHHHHHHHHHcCCCHHHhccceeEEEEECC------------HHHHHHHHHHHHhhccCCcchhhhcccCC
Confidence 999999999999999999999999999999999999975 47999999999999999999999999999
Q ss_pred CCCCcceeEEEEeccCCCCceeEEEEEechHHHHHHHHHHHhhccCcccccccccCCCCCCCCCCCcccccchhhHHHHH
Q 003428 451 KPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRI 530 (820)
Q Consensus 451 K~NGYqSLHttV~~~~~~~~~~vEVQIRT~~Mh~~AE~G~aahwkyK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (820)
|+||||||||+|++++ |.++||||||..||.+||+|+||||+||++.. .. +. ...++.++
T Consensus 315 K~NGYqSLHttv~~~~---g~~vEVQIRT~~Mh~~AE~GvAAHW~YKeg~~-----------~~--~~----~~~~~~~~ 374 (743)
T PRK10872 315 KPNGYQSIHTVVLGPG---GKTVEIQIRTRQMHEDAELGVAAHWKYKEGAA-----------AG--GG----RSGHEDRI 374 (743)
T ss_pred CCCCcceeEEEEECCC---CcEEEEEEEcHHHHHHHhhhHHHHHhccCCCC-----------cc--cc----ccchHHHH
Confidence 9999999999998754 48999999999999999999999999997421 00 00 01134568
Q ss_pred HHHHHHHHHHHhhhcCCCchhhhhhhcccccCCCeeeecCCCceEecCCCCcHhHHHhhcccccccceEEEEECCEecCC
Q 003428 531 SWLNAIREWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSP 610 (820)
Q Consensus 531 ~wl~~l~e~~~~~~~~~~~~ef~~~~k~dL~~~~I~VftP~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l 610 (820)
.||++|++||++. .++.||++.+|.|||+++||||||+|+++.||.||||+||||+|||++|++|+||||||++|||
T Consensus 375 ~wLr~lle~~~~~---~d~~ef~e~~k~dl~~d~V~VfTPkG~~~~Lp~gaT~lDfAy~iHt~iG~~~~gAkvng~~v~l 451 (743)
T PRK10872 375 AWLRKLIAWQEEM---ADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPF 451 (743)
T ss_pred HHHHHHHHHHhcc---CCHHHHHHHHHHHhcCCeEEEECCCCCeEEcCCCCcHHHHHHHHhHHHHhhceEEEECCEECCC
Confidence 9999999999984 2478999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCeEEEEeccCCCCCCcCCCChhHHH----HhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC--
Q 003428 611 THVLANAEVVEIITYNALSSKSAFQRHKQWLE----HAKTRSARHKIMKFLREQAALSASEITADTVGDFVADSGEES-- 684 (820)
Q Consensus 611 ~~~L~~gd~VeIlT~~~~~~~~~~~p~~~WL~----~v~T~~Ar~~ir~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-- 684 (820)
+++|++||+|||+|++++ .|+++||+ ||+|++||++||+|||+++++.+.+.|+++|++.|++.++..
T Consensus 452 ~~~L~~GD~VeIits~~~------~Ps~dWL~~~lg~v~T~rAR~kIr~~~k~~~~~~~i~~Gr~lL~k~l~~~~~~~~~ 525 (743)
T PRK10872 452 TYQLQMGDQIEIITQKQP------NPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKE 525 (743)
T ss_pred CcCCCCCCEEEEEeCCCC------CCChhHhccccCeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 999999999999999865 49999999 999999999999999999999999999999999999877542
Q ss_pred ------------ccccccccccCCchhHHHHHHHHhhc-CCCC--CC---C-cccc---c-CC-CCCCCC-CeecCcCCc
Q 003428 685 ------------EVEDLSDGSKQDKPLWEKILMNVVQM-SSPV--RN---S-KAVC---S-DD-NASLWA-PKVNGKHNK 739 (820)
Q Consensus 685 ------------~~~~fy~~i~~~~~~~~~i~~~~~~~-~~~~--~~---~-~~~~---~-~~-~~~~~~-~~V~G~~n~ 739 (820)
+.++||++|+.++-....+.....+. .+.. +. . .... + .+ .....+ +.|.|.++.
T Consensus 526 ~~~~l~~~~~~~~~ddl~~~iG~g~i~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~G~~~~ 605 (743)
T PRK10872 526 AEKHLLPRYNFNSLDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYTPQNRSKDNGRVVVEGVGNL 605 (743)
T ss_pred HHHHHHHHhCCCCHHHHHHHhcCCCCCHHHHHHHHHHHhcccccccchhhhhhhhcccccccccccCCCCeEEEecCCCc
Confidence 23899999977554444444333110 0000 00 0 0000 0 00 001222 789999977
Q ss_pred ccc------cc-CCcceeeeecCCCCee--eecCCChhhhhhhCCCcccccCCCceecccCCCceee-EEEEEEecccch
Q 003428 740 RVH------YV-GSKAEGELSSQENSFA--KMMHANVPMYKEVLPGLESWQASKIATWHNLEGHSIQ-WFSVVCIDRRGN 809 (820)
Q Consensus 740 ~~~------PI-GD~i~G~it~~g~gi~--r~~C~n~~~l~~~~~~rii~~~~~~a~W~~~~~~sf~-~i~V~~~DR~Gl 809 (820)
.++ || ||+|+|||| +|+||+ |.+|||+.++.+..|+|++ +++|+......|. .|.|.+.||.||
T Consensus 606 lv~~A~CC~PiPGD~IvG~iT-rGrGI~VHr~dC~nl~~l~~~~~eR~I-----~V~W~~~~~~~~~v~I~I~~~Dr~Gl 679 (743)
T PRK10872 606 MHHIARCCQPIPGDEIVGFIT-QGRGISIHRADCEQLAELRSHAPERIV-----DAVWGESYSSGYSLVVRVTANDRSGL 679 (743)
T ss_pred eEEECCCCCCCCCCcEEEEEE-CCCCEEEEcccChhhHhhhhcCCceEE-----EeEecCCCCceeEEEEEEEEcCCCCH
Confidence 654 99 999999998 999998 9999999998888899999 9999875455899 999999999999
Q ss_pred HHHHHHHhhc
Q 003428 810 FHSVEIVMQS 819 (820)
Q Consensus 810 l~dvt~vi~~ 819 (820)
|+|||++|++
T Consensus 680 L~dIt~~is~ 689 (743)
T PRK10872 680 LRDITTILAN 689 (743)
T ss_pred HHHHHHHHHH
Confidence 9999999974
No 3
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=100.00 E-value=8.9e-156 Score=1368.05 Aligned_cols=618 Identities=31% Similarity=0.526 Sum_probs=549.9
Q ss_pred HHhHhhhh-cCCChhhHHHHHHHHHHHHHhhcCCccccCCcccchHHHHHHHHHHcCCCHHHHHHHhhccccccCCCCCH
Q 003428 131 WEDLRPTI-SYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTF 209 (820)
Q Consensus 131 ~~~l~~~~-~~~~~~~~~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILaelglD~~tIiAALLHDvVEDT~~~T~ 209 (820)
++.|...+ .|+++.+.+++.+|+.||.++|.||+|++|+||+.||++||.||+++++|.++|+||||||+||||+ +|.
T Consensus 4 ~~~l~~~~~~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~ti~AaLLHDvvEDt~-~t~ 82 (702)
T PRK11092 4 FESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMRLDYETLMAALLHDVIEDTP-ATY 82 (702)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccCCcCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHhcccchhhhCC-CCH
Confidence 44555555 6899999999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred HHHHHHhChHHHHHHhhhcccccccccccccCCcchhhhhHHHHHHHHHhccCCceEEeeeehhhhhccccccCCCCcch
Q 003428 210 ERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQ 289 (820)
Q Consensus 210 eeI~~~FG~~Va~LV~glTkvs~l~~~~~~~~~~~~~~~qae~~RkmLLam~~D~RViLIKLADRLhNMRtL~~~p~~kq 289 (820)
++|++.||++|+.+|+||||++++.. .+ ....++|++||||++|++|+||+||||||||||||||..+|+++|
T Consensus 83 e~i~~~FG~~Va~lV~gvTk~~~l~~---~~----~~~~q~e~~rkmllam~~DiRVvlIKLADRlhNmrtL~~~~~ek~ 155 (702)
T PRK11092 83 QDMEQLFGKSVAELVEGVSKLDKLKF---RD----KKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKR 155 (702)
T ss_pred HHHHHHHCHHHHHHHHHHHhhccccc---cc----hhhHHHHHHHHHHHHhcCCCceEEEEHHHHHhhHHHHHhcCccHH
Confidence 99999999999999999999877542 11 234589999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhCHHHHHHHHhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 003428 290 SSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTV 369 (820)
Q Consensus 290 ~~iA~ETl~iYaPLA~RLGl~~iK~ELEDLsf~~l~P~~y~~i~~~l~~~r~~~e~~i~~~~~~L~~~L~~~~~l~~~~i 369 (820)
++||+||++||||||||||||+||||||||||+||+|++|+.|++.|.+.+.+|+++++.+.+.|++.|.+. |+
T Consensus 156 ~~iA~ETl~iyaPlA~rlGi~~ik~eLedL~f~~l~P~~y~~i~~~~~~~~~~r~~~i~~~~~~l~~~l~~~------~i 229 (702)
T PRK11092 156 RRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILSEIEGRLQEA------GI 229 (702)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999654 78
Q ss_pred eeEEEEEecChHHHHHHHHhcCCCCCccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhcccccccccccccccC
Q 003428 370 KTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIAT 449 (820)
Q Consensus 370 ~~~V~~R~K~~ySI~~Km~rk~~~~~eI~Di~giRIIv~~~~c~~~~~~~~~~~dCY~vlg~Ih~~~~pip~r~kDyIa~ 449 (820)
+++|.||+||+||||+||++|+.+|++|+|++|+||||++ ..+||++||+||++|+|+|++|||||+.
T Consensus 230 ~~~i~~R~K~~ySI~~Km~~k~~~~~~i~Di~a~Riiv~~------------~~dCY~~lg~ih~~~~pip~~~kDyIa~ 297 (702)
T PRK11092 230 PCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVDD------------SDTCYRVLGQMHSLYKPRPGRVKDYIAI 297 (702)
T ss_pred cEEEEeccCCHHHHHHHHHHcCCChhHhccceeEEEEECC------------HHHHHHHHHHHHhcCCCCcCccccccCC
Confidence 9999999999999999999999999999999999999875 4799999999999999999999999999
Q ss_pred CCCCCcceeEEEEeccCCCCceeEEEEEechHHHHHHHHHHHhhccCcccccccccCCCCCCCCCCCcccccchhhHHHH
Q 003428 450 PKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALR 529 (820)
Q Consensus 450 PK~NGYqSLHttV~~~~~~~~~~vEVQIRT~~Mh~~AE~G~aahwkyK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (820)
||+||||||||+|++++ |.++||||||.+||.+||+|+||||+||++.. . . .....+.
T Consensus 298 PK~NgYqSLHt~v~g~~---g~~vEvQIRT~~Mh~~Ae~GvaAhW~yK~~~~------------~---~----~~~~~~~ 355 (702)
T PRK11092 298 PKANGYQSLHTSMIGPH---GVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGE------------T---G----TTAQIRA 355 (702)
T ss_pred CCCCCCceEEEEEECCC---CcEEEEEEEcHHHHHHHhhhhHhhhhhccCCC------------c---c----chhHHHH
Confidence 99999999999998754 48999999999999999999999999997410 0 0 0111234
Q ss_pred HHHHHHHHHHHHhhhcCCCchhhhhhhcccccCCCeeeecCCCceEecCCCCcHhHHHhhcccccccceEEEEECCEecC
Q 003428 530 ISWLNAIREWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS 609 (820)
Q Consensus 530 ~~wl~~l~e~~~~~~~~~~~~ef~~~~k~dL~~~~I~VftP~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~ 609 (820)
+.||+++++||++. .++.||++.+|.|||+++||||||+|++++||.||||+||||+|||++|++|+||||||++||
T Consensus 356 ~~wlr~ll~~~~~~---~~~~ef~~~~~~dl~~d~v~VfTP~G~v~~LP~GaT~lDFAY~iHt~iG~~c~gAkVNg~~vp 432 (702)
T PRK11092 356 QRWMQSLLELQQSA---GSSFEFIESVKSDLFPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYP 432 (702)
T ss_pred HHHHHHHHHHHhhc---CChHHHHHHHHhhhccceEEEECCCCCEEeCCCCCchhhhhHhhCchhhceeEEEEECCEECC
Confidence 78999999999874 247899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCeEEEEeccCCCCCCcCCCChhHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CC-C---
Q 003428 610 PTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITADTVGDFVADSG-EE-S--- 684 (820)
Q Consensus 610 l~~~L~~gd~VeIlT~~~~~~~~~~~p~~~WL~~v~T~~Ar~~ir~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~-~--- 684 (820)
|+|+|++||+|||+|++++ +|+++||+||+|++||++||+|||+++++.+.++|+++|++.|++.+ +. +
T Consensus 433 L~~~L~~Gd~VeIiT~~~~------~P~~dWL~~v~T~rAr~kIr~~~r~~~~~~~i~~Gr~lL~~~l~~~~~~~~~~~~ 506 (702)
T PRK11092 433 LSQPLTSGQTVEIITAPGA------RPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKLDEIPQE 506 (702)
T ss_pred CCccCCCCCEEEEEeCCCC------CCChHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCChhhcCHH
Confidence 9999999999999999865 38999999999999999999999999999999999999999998763 11 1
Q ss_pred ------------ccccccccccCCchhHHHHHHHHhhcCCCCCCCcccccCCCCCCCCCeecCcCCcccc------cc-C
Q 003428 685 ------------EVEDLSDGSKQDKPLWEKILMNVVQMSSPVRNSKAVCSDDNASLWAPKVNGKHNKRVH------YV-G 745 (820)
Q Consensus 685 ------------~~~~fy~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~G~~n~~~~------PI-G 745 (820)
+.++||++|+.++-....+...+..... + .. ..+....++.|.|.++..++ || |
T Consensus 507 ~l~~~~~~~~~~~~d~l~~~iG~g~i~~~~v~~~~~~~~~--~--~~---~~~~~~~~i~I~G~~~~~v~~A~CC~PiPG 579 (702)
T PRK11092 507 NIQRELDRMKLATLDDLLAEIGLGNAMSVVVAKNLLGDDA--E--LP---TATSSHGKLPIKGADGVLITFAKCCRPIPG 579 (702)
T ss_pred HHHHHHHHcCCCCHHHHHHHHcCCCCCHHHHHHHhhhhcc--c--cc---ccccCCCceEEeccCCceEEeCCCCCCCCC
Confidence 1288888887765444455444422100 0 00 00012345889999988654 99 9
Q ss_pred CcceeeeecCCCCee--eecCCChhhhhhhCCCcccccCCCceecccCCCceee-EEEEEEecccchHHHHHHHhhc
Q 003428 746 SKAEGELSSQENSFA--KMMHANVPMYKEVLPGLESWQASKIATWHNLEGHSIQ-WFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 746 D~i~G~it~~g~gi~--r~~C~n~~~l~~~~~~rii~~~~~~a~W~~~~~~sf~-~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
|+|+|||| +|+||+ |.+|||+.++ ...|+|++ +++|+......|. .|.|.+.||.|+|++||++|++
T Consensus 580 D~IvG~it-~grGI~VHr~dC~nl~~l-~~~~er~i-----~v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~ 649 (702)
T PRK11092 580 DPIIAHVS-PGKGLVIHHESCRNIRGY-QKEPEKFM-----AVEWDKETEQEFIAEIKVEMFNHQGALANLTAAINT 649 (702)
T ss_pred CcEEEEEE-CCCCEEEECcCCchhhhh-hcCcceeE-----EeEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHH
Confidence 99999998 999998 9999999988 44699999 9999876566899 9999999999999999999975
No 4
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=100.00 E-value=6.1e-146 Score=1288.20 Aligned_cols=601 Identities=38% Similarity=0.591 Sum_probs=532.1
Q ss_pred HHHHHHHhhcCCccccCCcccchHHHHHHHHHHcCCCHHHHHHHhhccccccCCCCCHHHHHHHhChHHHHHHhhhcccc
Q 003428 152 ALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVS 231 (820)
Q Consensus 152 A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILaelglD~~tIiAALLHDvVEDT~~~T~eeI~~~FG~~Va~LV~glTkvs 231 (820)
|+.||..+|.||+|++|+||+.||++||.+|+++|+|.++++||||||+||||+ +|.++|++.||++|+.+|+||||++
T Consensus 1 A~~~A~~aH~gQ~rksg~PYi~Hpl~VA~iL~~~~~D~~~i~AaLLHDvvEDt~-~t~e~i~~~FG~~Va~lV~~vTk~~ 79 (683)
T TIGR00691 1 ALEIAKDLHEGQKRKSGEPYIIHPLAVALILAELGMDEETVCAALLHDVIEDTP-VTEEEIEEEFGEEVAELVDGVTKIT 79 (683)
T ss_pred CHHHHHHhcccCcCCCCCcHHHHHHHHHHHHHHhCCCHHHHHHHhccchHhcCC-CCHHHHHHHHCHHHHHHHHHHHHhc
Confidence 688999999999999999999999999999999999999999999999999999 8999999999999999999999998
Q ss_pred cccccccccCCcchhhhhHHHHHHHHHhccCCceEEeeeehhhhhccccccCCCCcchhhHHHHHHHHHHHHHHHhCHHH
Q 003428 232 KLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQ 311 (820)
Q Consensus 232 ~l~~~~~~~~~~~~~~~qae~~RkmLLam~~D~RViLIKLADRLhNMRtL~~~p~~kq~~iA~ETl~iYaPLA~RLGl~~ 311 (820)
.+... .....++|++|+||++|+.|+||++|||||||||||+|..+|+++|+++|+||++||||||||||||+
T Consensus 80 ~~~~~-------~~~~~q~e~~rkmlla~~~d~rvvlVKLADrlhNmrtl~~~~~~k~~~iA~Et~~iyaPlA~rLG~~~ 152 (683)
T TIGR00691 80 KLKKK-------SRQELQAENFRKMILAMAQDIRVIVIKLADRLHNMRTLDFLPPEKQKRIAKETLEIYAPLAHRLGMSS 152 (683)
T ss_pred ccccc-------hhhHHHHHHHHHHHHhhcCCcceEeeeHHHHHhHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 76421 12446899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeEEEEEecChHHHHHHHHhcC
Q 003428 312 IKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTEIRSVCKEPYSIYKAVLKSR 391 (820)
Q Consensus 312 iK~ELEDLsf~~l~P~~y~~i~~~l~~~r~~~e~~i~~~~~~L~~~L~~~~~l~~~~i~~~V~~R~K~~ySI~~Km~rk~ 391 (820)
||||||||||+||+|++|+.|++.|++.+.+|+.+++.+.+.|++.|.+. +++++|.||+|++||||+||++++
T Consensus 153 ik~eLedl~f~~l~p~~y~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~------~i~~~i~~R~K~~~Si~~Km~~k~ 226 (683)
T TIGR00691 153 IKTELEDLSFKYLYPKEYENIKSLVNEQKVNRENKLEKFKSELEKRLEDS------GIEAELEGRSKHLYSIYQKMTRKG 226 (683)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCceEEEeeeCCHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999654 688999999999999999999999
Q ss_pred CCCCccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhcccccccccccccccCCCCCCcceeEEEEeccCCCCce
Q 003428 392 GSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMF 471 (820)
Q Consensus 392 ~~~~eI~Di~giRIIv~~~~c~~~~~~~~~~~dCY~vlg~Ih~~~~pip~r~kDyIa~PK~NGYqSLHttV~~~~~~~~~ 471 (820)
.+|++|+|++|+||||++ ..+||.+||+||++|+|+|++|||||++||+||||||||+|.+++ |.
T Consensus 227 ~~~~~i~Di~~~RIi~~~------------~~dcy~vlg~ih~~~~p~~~~~kDyIa~PK~nGYqSlHt~v~~~~---g~ 291 (683)
T TIGR00691 227 QNFDEIHDLLAIRIIVKS------------ELDCYRVLGIIHLLFKPIPGRFKDYIASPKENGYQSLHTTVRGPK---GL 291 (683)
T ss_pred CCHHHcccceeEEEEECC------------HHHHHHHHHHHHhcCCCCcccccccccCCCCCCcceeEEEEEcCC---CC
Confidence 999999999999999875 479999999999999999999999999999999999999998644 48
Q ss_pred eEEEEEechHHHHHHHHHHHhhccCcccccccccCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHhhhcCCCchh
Q 003428 472 RLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQEEFVGNMTSRE 551 (820)
Q Consensus 472 ~vEVQIRT~~Mh~~AE~G~aahwkyK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~l~e~~~~~~~~~~~~e 551 (820)
++||||||..||.|||+|+|+||+||++.. + ......++.||+++++||++. .++.+
T Consensus 292 ~~EvQIRT~~mh~~Ae~Gvaahw~yk~~~~--------------~------~~~~~~~~~wl~~~~~~~~~~---~~~~~ 348 (683)
T TIGR00691 292 PVEIQIRTEDMDRVAEYGIAAHWIYKEGNP--------------Q------KEALIDDMRWLNYLVEWQQES---ANFFE 348 (683)
T ss_pred EEEEEEEehHHHHHHHHHHHHHHhhcCCCC--------------c------chhHHHHHHHHHHHHHHHhhc---ccchh
Confidence 999999999999999999999999997411 0 011235679999999999874 24779
Q ss_pred hhhhhcccccCCCeeeecCCCceEecCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEeccCCCCC
Q 003428 552 FVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSK 631 (820)
Q Consensus 552 f~~~~k~dL~~~~I~VftP~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l~~~L~~gd~VeIlT~~~~~~~ 631 (820)
|++.+|.|||+++||||||+|+++.||.||||+||||+|||++|++|+||||||+.|||+++|++||+|||+|++++
T Consensus 349 ~~~~~k~~l~~~~i~vfTPkG~~~~lp~gst~~DfAy~ih~~~g~~~~~a~vng~~v~l~~~l~~gd~vei~t~~~~--- 425 (683)
T TIGR00691 349 FIENLKSDLFNEEIYVFTPKGDVVELPSGSTPVDFAYAVHTDVGNKCTGAKVNGKIVPLDKELENGDVVEIITGKNS--- 425 (683)
T ss_pred HHHHhhHHhccCceEEECCCCeEEEcCCCCCHHHHHHHHhHHhHhceeEEEECCEECCCCccCCCCCEEEEEeCCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CcCCCChhHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc-----------------ccccccccc
Q 003428 632 SAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITADTVGDFVADSGEESE-----------------VEDLSDGSK 694 (820)
Q Consensus 632 ~~~~p~~~WL~~v~T~~Ar~~ir~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----------------~~~fy~~i~ 694 (820)
.|+++||+||+|++||++||+|||+++++.+.+.|+++|++.|+..++... -++||++|+
T Consensus 426 ---~P~~dWL~~v~T~rAR~kIr~~~k~~~r~~~i~~G~~lLek~l~~~~~~~~~~~~~~~~~l~~~~~~~~ddl~~~iG 502 (683)
T TIGR00691 426 ---NPSVIWLNFVVTSKARNKIRQWLKKLRREVAISEGKNILEKELGRSGLKLEDLTQYIQKRLNRLRFKKLSELLAEIG 502 (683)
T ss_pred ---CCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCCCHHHHHHHHh
Confidence 499999999999999999999999999999999999999999998776531 188888887
Q ss_pred CCchhHHHHHHHHhhc-CCCCCC--Ccccc-cCCC-CCCCCCeecCcCCcccc------cc-CCcceeeeecCCCCee--
Q 003428 695 QDKPLWEKILMNVVQM-SSPVRN--SKAVC-SDDN-ASLWAPKVNGKHNKRVH------YV-GSKAEGELSSQENSFA-- 760 (820)
Q Consensus 695 ~~~~~~~~i~~~~~~~-~~~~~~--~~~~~-~~~~-~~~~~~~V~G~~n~~~~------PI-GD~i~G~it~~g~gi~-- 760 (820)
.++-....+.....+. ...... ...+. +.+. .....+.|.|.++..++ |+ ||+|+||+| +|+||+
T Consensus 503 ~g~i~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~~v~~A~CC~PvPGD~IiG~it-~g~Gi~VH 581 (683)
T TIGR00691 503 KGNFSSKEVAKLLAQNNSKWQALTKPLKFAFSPKVFENSSFESIEGIEITKIVIAKCCSPIPGDPIIGIVT-KGKGLSVH 581 (683)
T ss_pred CCCCCHHHHHHHHHHhhhcccccchhhhcccccccccCCCceeeecCCCceeEECCCCCCCCCCcEEEEEE-CCCCEEEE
Confidence 7554444444443221 000000 00000 0000 01234779998877654 99 999999998 999998
Q ss_pred eecCCChhhhhhhCCCcccccCCCceecccCCCceee-EEEEEEecccchHHHHHHHhhc
Q 003428 761 KMMHANVPMYKEVLPGLESWQASKIATWHNLEGHSIQ-WFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 761 r~~C~n~~~l~~~~~~rii~~~~~~a~W~~~~~~sf~-~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
|.+|||+..+ .|+|++ +++|+......|. +|.|.+.||.|+|++||++|++
T Consensus 582 r~dC~nl~~~---~~er~I-----~v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~ 633 (683)
T TIGR00691 582 HKDCKNLKNY---KQEKII-----EVEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISE 633 (683)
T ss_pred ccCchhhhhc---CcccEE-----EEEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHH
Confidence 9999999865 368999 9999876566899 9999999999999999999975
No 5
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-78 Score=643.12 Aligned_cols=426 Identities=33% Similarity=0.488 Sum_probs=358.7
Q ss_pred hhhHHHHHHHHHHHHHhhcCCccccC-CcccchHHHHHHHHHHcCCCHHHHHHHhhccccccCCCCCHHHHHHHhChHHH
Q 003428 143 PNELELVRRALMLAFEAHDGQKRRSG-EPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVR 221 (820)
Q Consensus 143 ~~~~~~l~~A~~~A~~aH~gQ~RksG-ePYi~Hpl~VA~ILaelglD~~tIiAALLHDvVEDT~~~T~eeI~~~FG~~Va 221 (820)
-.+-+++-+|+.+|+.+|++|+|+++ +||+.||+.+|.||+.+++|+++++||+|||||+||. +++++|++.||.+|+
T Consensus 71 t~~s~lv~KAl~~Aa~~HR~Q~Rad~~rPY~nH~i~ta~iLAd~~~ds~Vv~AaiLHDVVDDt~-~S~eeI~~~FG~gVa 149 (543)
T KOG1157|consen 71 TFSSELVIKALYEAAKAHRGQMRADDDRPYLNHCIETAMILADIGADSTVVVAAILHDVVDDTF-MSYEEILRHFGTGVA 149 (543)
T ss_pred cCcHHHHHHHHHHHHHHHhcccccCCCCchhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhhcc-CCHHHHHHHhCccHH
Confidence 34567899999999999999999965 5999999999999999999999999999999999999 899999999999999
Q ss_pred HHHhhhcccccccccccccCCcchhhhhHHHHHHHHHhccCCceEEeeeehhhhhccccccCCCCcchhhHHHHHHHHHH
Q 003428 222 RIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFA 301 (820)
Q Consensus 222 ~LV~glTkvs~l~~~~~~~~~~~~~~~qae~~RkmLLam~~D~RViLIKLADRLhNMRtL~~~p~~kq~~iA~ETl~iYa 301 (820)
++|+++|+++.+.+..+++ ..+.+++| |+++++. .|++||||||+|||||+|.++||-+|++.+.||+.|||
T Consensus 150 ~LV~EvtddKnL~K~eRk~------l~qiet~~-~fyak~s-~RAvLIkLADKLdNMRdL~~lpPvgwq~~r~e~lfIwa 221 (543)
T KOG1157|consen 150 DLVEEVTDDKNLSKLERKN------LTQIETVE-MFYAKAS-ARAVLIKLADKLDNMRDLYALPPVGWQRFRKETLFIWA 221 (543)
T ss_pred HHHHHHhcccchhHHHHHH------HHHHHHHH-HHHHHHH-HHHHHHHHHHHHhhhhhhhccCcchhHHHHHHHHHHhh
Confidence 9999999999887654332 24778887 6667764 99999999999999999999999999999999999999
Q ss_pred HHHHHhCHHHHHHHHhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccce-eEEEEEecCh
Q 003428 302 PLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVK-TEIRSVCKEP 380 (820)
Q Consensus 302 PLA~RLGl~~iK~ELEDLsf~~l~P~~y~~i~~~l~~~r~~~e~~i~~~~~~L~~~L~~~~~l~~~~i~-~~V~~R~K~~ 380 (820)
|||+++|.+..+.+||||||+|++|..|.++..+|+.... +..|+..++.|++.|... |+. +-|+||.|++
T Consensus 222 pla~~~g~gtn~~lle~Ldf~~l~p~~~~~m~s~l~~~~~--~~mi~~~~~~l~~~l~~a------~i~~~~i~gr~ks~ 293 (543)
T KOG1157|consen 222 PLANRLGIGTNKVLLENLDFKHLFPCQHIEMSSMLEDSFD--EAMITSAIEKLEQALKKA------GISYHVIKGRHKSL 293 (543)
T ss_pred HHHHHhcccchHHHHhhhhHHHhCchhHHHHHHHHhcccc--hHHHHHHHHHHHHHHHhc------cceeEEEecchhhH
Confidence 9999999999999999999999999999999999998766 778888888999888654 444 5799999999
Q ss_pred HHHHHHHHhcCCCCCccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhcccccccccccccccCCCCCCcceeEE
Q 003428 381 YSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHT 460 (820)
Q Consensus 381 ySI~~Km~rk~~~~~eI~Di~giRIIv~~~~c~~~~~~~~~~~dCY~vlg~Ih~~~~pip~r~kDyIa~PK~NGYqSLHt 460 (820)
||||+||.|++...+||+|+.|+|+||++. .+||+++|+||.+|+.+|+++||||+.||.||||||||
T Consensus 294 ysi~~kmlk~~~~~dei~di~glr~i~~~~------------~~cyk~~~vv~slw~evp~k~kdyia~pk~ngy~slh~ 361 (543)
T KOG1157|consen 294 YSIYKKMLKKKLTPDEIHDIHGLRLIVDNE------------SDCYKALGVVHSLWSEVPGKLKDYIAHPKFNGYQSLHT 361 (543)
T ss_pred HHHHHHHHhcCCCHHHhhhhcceEEEEcCc------------hHHHHHHHHHHHHHHhCcchhhhhhcCccccccceeee
Confidence 999999999999999999999999999974 49999999999999999999999999999999999999
Q ss_pred EEeccCCCCceeEEEEEechHHHHHHHHHHHhhccCcccccccccCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHH
Q 003428 461 TLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQ 540 (820)
Q Consensus 461 tV~~~~~~~~~~vEVQIRT~~Mh~~AE~G~aahwkyK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~l~e~~ 540 (820)
+|+..+ ..|+||||||.+||.-||+|+|+||.||++.. +....+++.|.+....|.
T Consensus 362 ~v~~d~---~~plevqirt~em~~~a~~g~aah~~yk~g~~---------------------~~~~~q~~~~~~~~~~~~ 417 (543)
T KOG1157|consen 362 VVMVDG---TRPLEVQIRTMEMHLQAEFGFAAHWRYKEGKT---------------------SSFVLQMVEWARWVVTWH 417 (543)
T ss_pred EEecCC---cceeEEEEeeeccccccccchhhHhhhhcCCC---------------------CHHHHHHHHHHHHHHHHH
Confidence 998644 47999999999999999999999999998421 233567899999999998
Q ss_pred Hhhh-cCCCchhhhhhhcc-cccCCCeeeecCCCc----------------eEecCCCCcHhHHHhhccccccc------
Q 003428 541 EEFV-GNMTSREFVDTITR-DLLGSRVFVFTPRGE----------------IKNLPKGATVVDYAYMIHTEIGN------ 596 (820)
Q Consensus 541 ~~~~-~~~~~~ef~~~~k~-dL~~~~I~VftP~G~----------------i~~lP~GaT~lDfAy~Iht~lg~------ 596 (820)
-+.. .+.++.. -..+|. .--+|.+|.+.|++. +-++|+.+|++|.--.-.+.-..
T Consensus 418 ~~~~~kd~ss~~-~~~~k~~s~~~d~~f~~~~~~~~~~~~~~~~ie~e~m~~~~~~e~~~~~d~~s~~~~~s~~~~~~~~ 496 (543)
T KOG1157|consen 418 AEIMSKDISSIK-SSSCKFPSHQEDCPFSYKPKNGQGGPVYVIVIENEKMGVQEFPEMSTVSDLLSRAGPGSSRWSMYQI 496 (543)
T ss_pred HHHHhccccccc-ccccCCCCccccCceeecCCCCCCCceEEEEeeccccCCCCCchhhhHHHhhccCCCCccchhhhcC
Confidence 6652 1222211 112332 224678999999762 45689999999975332221100
Q ss_pred --ceEEEEECCEecCCCccCCCCCeEEEEec
Q 003428 597 --KMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (820)
Q Consensus 597 --~~~~akVNG~~v~l~~~L~~gd~VeIlT~ 625 (820)
.-..-+.|. ++.+.|+-||+||.+..
T Consensus 497 ~~e~lr~~~~~---d~~~k~~m~d~~~~~p~ 524 (543)
T KOG1157|consen 497 PAEELRPRLNQ---DLKYKLKMGDVVELTPH 524 (543)
T ss_pred cHHHhhhhhcc---chhHHhhhcchhhcCCC
Confidence 111233443 88889999999998654
No 6
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=100.00 E-value=2.1e-38 Score=311.32 Aligned_cols=153 Identities=55% Similarity=0.843 Sum_probs=98.1
Q ss_pred HHHHHHHhhcCCccccCCcccchHHHHHHHHHHcCCCHHHHHHHhhccccccCCCCCHHHHHHHhChHHHHHHhhhcccc
Q 003428 152 ALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVS 231 (820)
Q Consensus 152 A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILaelglD~~tIiAALLHDvVEDT~~~T~eeI~~~FG~~Va~LV~glTkvs 231 (820)
|+.||.++|.||++++|+||+.||++||.+|.++|+|+++++||||||++|||. .+ ++|++.||++|+++|.++|+++
T Consensus 1 A~~~A~~~h~~~~~~~g~py~~H~~~va~~l~~~~~d~~~i~aalLHD~ied~~-~~-~~i~~~fg~~V~~lV~~lt~~~ 78 (153)
T PF13328_consen 1 ALAFAAEAHAGQRRKSGEPYISHPLEVAEILAELGLDEETIAAALLHDVIEDTE-TT-EDIEERFGEDVADLVDALTKIK 78 (153)
T ss_dssp HHHHHHHHTTT-B-ST--BTTHHHHHHHHHHHTS---HHHHHHHHHTTHHHHSS----HHHHHHHHHHHHHHHHHT---T
T ss_pred CHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHcCCCHHHHhhheeecHHHhcC-CH-HHHHHccChHHHHHHHHHHhcc
Confidence 789999999999999999999999999999999999999999999999999996 55 9999999999999999999988
Q ss_pred cccccccccCCcchhhhhHHHHHHHHHhccCCceEEeeeehhhhhccccccCCCCcchhhHHHHHHHHHHHHHHHhCHH
Q 003428 232 KLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMY 310 (820)
Q Consensus 232 ~l~~~~~~~~~~~~~~~qae~~RkmLLam~~D~RViLIKLADRLhNMRtL~~~p~~kq~~iA~ETl~iYaPLA~RLGl~ 310 (820)
.+++.. .......+.+++|+||+++++|+||++|||||||||||++...++++++++|+||+++|+|||||||||
T Consensus 79 ~~~~~~----~~~~~~~~~~~~r~ml~~~~~d~~~~lIKlaDrl~nl~~~~~~~~~~~~~~a~Et~~i~apLA~rLGiw 153 (153)
T PF13328_consen 79 KLSKKP----WEERSEEYAERLRRMLLAMSEDVRAVLIKLADRLHNLRTIKYLPPEKQRRYARETLDIYAPLAHRLGIW 153 (153)
T ss_dssp TS-HH-------HHHHHHHHHGGG-----S-H-HHHHHHHHHHHHHHHHHHH---TT----------------------
T ss_pred cccccc----chhhHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhccHHHCCHHHhhhhhhccccccccccccccCC
Confidence 765430 011345688999999999999999999999999999999999999999999999999999999999998
No 7
>PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat. RelA (2.7.6.5 from EC) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (3.1.7.2 from EC) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homologue to SpoT and RelA appears reponsible for both ppGpp synthesis and ppGpp degradation. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. ; GO: 0015969 guanosine tetraphosphate metabolic process; PDB: 2BE3_B 1VJ7_B 3L9D_B.
Probab=99.93 E-value=3.7e-26 Score=213.43 Aligned_cols=110 Identities=32% Similarity=0.453 Sum_probs=91.2
Q ss_pred EEecChHHHHHHHHhcCC---CCCccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhcccccccccccccccCCC
Q 003428 375 SVCKEPYSIYKAVLKSRG---SINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPK 451 (820)
Q Consensus 375 ~R~K~~ySI~~Km~rk~~---~~~eI~Di~giRIIv~~~~c~~~~~~~~~~~dCY~vlg~Ih~~~~pip~r~kDyIa~PK 451 (820)
+|+|+++|+++|+.|++. .+.+|+|++|+|||+... .|||.++++|+..|.+.+.+++|||+.||
T Consensus 1 ~RvK~~~Sl~~Kl~r~~~~~~~~~~i~Dl~G~RIi~~~~------------~d~~~v~~~l~~~~~~~~~~~~d~i~~~~ 68 (115)
T PF04607_consen 1 SRVKSPESLIEKLRRKGGPDNPLKDIQDLVGIRIIVYFP------------DDCYKVLGLLHKLFDVKIDRSKDYIANPK 68 (115)
T ss_dssp EEE--HHHHHHCHHHHTGCCCCCCCTCCSEEEEEEESSC------------CHHHHHHHHHHTHSSCEEEEEEETTTT--
T ss_pred CCCCCHHHHHHHHHhHCCCcccHHHhccccEEEEEEeeH------------HHHHHHHHHHHHcCCcccccccccccccc
Confidence 699999999999999874 799999999999998764 59999999999999999999999999999
Q ss_pred CCCcceeEEEEeccCCCCceeEEEEEechHHHHHHHHHHHhhccCcc
Q 003428 452 PNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRV 498 (820)
Q Consensus 452 ~NGYqSLHttV~~~~~~~~~~vEVQIRT~~Mh~~AE~G~aahwkyK~ 498 (820)
.|||||+|++|.......+.++||||||.+||.|||..| ||.||.
T Consensus 69 ~~GYrs~H~~v~~~~~~~~~~~EiQIrT~~~~~waei~h--~~~YK~ 113 (115)
T PF04607_consen 69 SNGYRSLHYIVPENESFKGYPFEIQIRTLLQHAWAEIEH--DLRYKS 113 (115)
T ss_dssp TTS--EEEEEEEETTECEEEEEEEEEEEHHHHHHHHHHH--HHHHHC
T ss_pred cCCcEeeEeeeeecccCCCceeeeeeccHHHHHHHHHHH--HHhCCC
Confidence 999999999993333345689999999999999999555 566663
No 8
>cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases. This family includes the catalytic domains of Escherichia coli ppGpp synthetase (RelA), ppGpp synthetase/hydrolase (SpoT), and related proteins. RelA synthesizes (p)ppGpp in response to amino-acid starvation and in association with ribosomes. (p)ppGpp triggers the bacterial stringent response. SpoT catalyzes (p)ppGpp synthesis under carbon limitation in a ribosome-independent manner. It also catalyzes (p)ppGpp degradation. Gram-negative bacteria have two enzymes involved in (p)ppGpp metabolism while most Gram-positive organisms have a single Rel-Spo enzyme (Rel), which both synthesizes and degrades (p)ppGpp. The Arabidopsis thaliana Rel-Spo proteins, At-RSH1,-2, and-3 appear to regulate a rapid (p)ppGpp-mediated response to pathogens and other stresses. This catalytic domain is found in association with an N-terminal HD domain and a C-terminal metal dependent phosphohydro
Probab=99.93 E-value=1e-25 Score=215.14 Aligned_cols=107 Identities=36% Similarity=0.572 Sum_probs=96.9
Q ss_pred eeEEEEEecChHHHHHHHHhcCCCC---CccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccccccccccc
Q 003428 370 KTEIRSVCKEPYSIYKAVLKSRGSI---NEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDY 446 (820)
Q Consensus 370 ~~~V~~R~K~~ySI~~Km~rk~~~~---~eI~Di~giRIIv~~~~c~~~~~~~~~~~dCY~vlg~Ih~~~~pip~r~kDy 446 (820)
.+.|.+|+|+++|+++||.+++... ++|+|++|+|||++. ..|||.+++.|++.|++.|++++||
T Consensus 20 ~~~v~~RvK~~~sl~~Kl~~~~~~~~~~~~i~Dl~g~Rii~~~------------~~d~~~v~~~l~~~f~~~~~~~~D~ 87 (129)
T cd05399 20 VASVSGRVKSPYSIYEKLRRKGKDLPILDEITDLVGVRVVLLF------------VDDCYRVLDLLHSLFKVIPGRVKDY 87 (129)
T ss_pred CcEEEEecCCHHHHHHHHHhhCCCCCcHHHhhhhheEEEEEeC------------HHHHHHHHHHHHhCCcccCccccCC
Confidence 6799999999999999999998777 999999999999875 4799999999999999999999999
Q ss_pred ccCCCCCCcceeEEEEeccCCCCceeEEEEEechHHHHHHHH
Q 003428 447 IATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAER 488 (820)
Q Consensus 447 Ia~PK~NGYqSLHttV~~~~~~~~~~vEVQIRT~~Mh~~AE~ 488 (820)
|+.||+|||||+|++|..++...+.++||||||..||.|||.
T Consensus 88 ~~~p~~~GYrslH~~~~~~~~~~~~~~EIQirT~~~~~wae~ 129 (129)
T cd05399 88 IAEPKENGYQSLHLVVRGPEDKAGVLIEIQIRTILMHAWAEL 129 (129)
T ss_pred cCCCCCCCceEEEEEEEcCCCcCCcEEEEEeCCHHHHHHhcC
Confidence 999999999999999964331135899999999999999984
No 9
>COG2357 PpGpp synthetase catalytic domain [General function prediction only]
Probab=99.91 E-value=2.4e-24 Score=221.18 Aligned_cols=116 Identities=34% Similarity=0.441 Sum_probs=101.5
Q ss_pred eEEEEEecChHHHHHHHHhcCCCC------CccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccccccccc
Q 003428 371 TEIRSVCKEPYSIYKAVLKSRGSI------NEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMK 444 (820)
Q Consensus 371 ~~V~~R~K~~ySI~~Km~rk~~~~------~eI~Di~giRIIv~~~~c~~~~~~~~~~~dCY~vlg~Ih~~~~pip~r~k 444 (820)
..|++|+|++.||..|++||+.++ ++|+||+||||+ | .+.+|.|.+..++.+......-..|
T Consensus 53 e~Vt~RvK~~~Si~~Kl~RK~~~i~~~~~~e~i~DIaGIRI~-----c-------~F~~DI~~v~~~l~~~~d~~iv~~k 120 (231)
T COG2357 53 EHVTSRVKSPESILEKLRRKGLEITYENLKEDIQDIAGIRII-----C-------QFVDDIYRVVDLLKSRKDFTIVEEK 120 (231)
T ss_pred HHHhhccCCHHHHHHHHHhcCCCCChHHHHhHHHhhcceeEe-----e-------ehHhhHHHHHHHHhcccCccchhHH
Confidence 479999999999999999999443 689999999998 3 3568999999999987666666899
Q ss_pred ccccCCCCCCcceeEEEE-ecc---CCCCceeEEEEEechHHHHHHHHHHHhhccCcc
Q 003428 445 DYIATPKPNGYQSLHTTL-IPF---LYESMFRLEVQIRTEEMDLIAERGIAAHYSGRV 498 (820)
Q Consensus 445 DyIa~PK~NGYqSLHttV-~~~---~~~~~~~vEVQIRT~~Mh~~AE~G~aahwkyK~ 498 (820)
|||.+||+|||||+|++| +|- .+.....|||||||..||.||++.|.-.|||.+
T Consensus 121 Dyi~n~k~~GYRS~Hlive~pv~~~~~~~~~~vEIQIRTiam~fWAsiEH~l~YKy~~ 178 (231)
T COG2357 121 DYIRNPKPNGYRSYHLILEVPVFTINGVKKVRVEIQIRTIAMDFWASIEHKLRYKYGG 178 (231)
T ss_pred HHHhCCCCCCCceEEEEEeccchhhccccceEEEEehhHHHHHHHHHHHHHhhccccc
Confidence 999999999999999999 442 244568999999999999999999999999975
No 10
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=99.73 E-value=2.8e-18 Score=143.62 Aligned_cols=60 Identities=53% Similarity=0.854 Sum_probs=58.1
Q ss_pred eeeecCCCceEecCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEe
Q 003428 565 VFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (820)
Q Consensus 565 I~VftP~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l~~~L~~gd~VeIlT 624 (820)
|+||||||++++||+|+||+||||+||+++|+++++|+|||+.|+|+++|++||+|||+|
T Consensus 1 I~v~lpdG~~~~~~~g~T~~d~A~~I~~~l~~~~~~A~Vng~~vdl~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 1 IRVYLPDGSIKELPEGSTVLDVAYSIHSSLAKRAVAAKVNGQLVDLDHPLEDGDVVEIIT 60 (60)
T ss_dssp EEEEETTSCEEEEETTBBHHHHHHHHSHHHHHCEEEEEETTEEEETTSBB-SSEEEEEEE
T ss_pred CEEECCCCCeeeCCCCCCHHHHHHHHCHHHHhheeEEEEcCEECCCCCCcCCCCEEEEEC
Confidence 689999999999999999999999999999999999999999999999999999999998
No 11
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.26 E-value=4.5e-12 Score=110.88 Aligned_cols=60 Identities=35% Similarity=0.514 Sum_probs=53.9
Q ss_pred eeeec-CCC------ceEecCCCCcHhHHHhhcccccccceEEEEE-------CCEecCCCccCCCCCeEEEEe
Q 003428 565 VFVFT-PRG------EIKNLPKGATVVDYAYMIHTEIGNKMVAAKV-------NGNLVSPTHVLANAEVVEIIT 624 (820)
Q Consensus 565 I~Vft-P~G------~i~~lP~GaT~lDfAy~Iht~lg~~~~~akV-------NG~~v~l~~~L~~gd~VeIlT 624 (820)
|.||| |+| +.+.||+|||+.|||++||+++++.+..|+| +|+.|+++++|++||+|||++
T Consensus 2 irvytk~~g~~~d~~~~liL~~GaTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq~Vgl~~~L~d~DvVeI~~ 75 (75)
T cd01666 2 IRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQRVGLDHVLEDEDVVQIVK 75 (75)
T ss_pred EEEEeCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCeECCCCCEecCCCEEEEeC
Confidence 45676 233 6899999999999999999999999998886 999999999999999999985
No 12
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.18 E-value=1.7e-11 Score=107.51 Aligned_cols=52 Identities=37% Similarity=0.600 Sum_probs=47.9
Q ss_pred CceEecCCCCcHhHHHhhcccccccceEE---EEECCEecCCCccCCCCCeEEEEe
Q 003428 572 GEIKNLPKGATVVDYAYMIHTEIGNKMVA---AKVNGNLVSPTHVLANAEVVEIIT 624 (820)
Q Consensus 572 G~i~~lP~GaT~lDfAy~Iht~lg~~~~~---akVNG~~v~l~~~L~~gd~VeIlT 624 (820)
++.+.||.|+|++||||+||+++|++++. +| ||+.++++|+|++||+|+|+|
T Consensus 22 ~d~~~l~~GaTv~D~A~~IHtdi~~~f~~Ai~~k-~~~~vg~~~~L~dgDvV~Ii~ 76 (76)
T cd01669 22 PDAFLLPKGSTARDLAYAIHTDIGDGFLHAIDAR-TGRRVGEDYELKHRDVIKIVS 76 (76)
T ss_pred cceEEECCCCCHHHHHHHHHHHHHhcceeeEEee-CCEEeCCCcEecCCCEEEEeC
Confidence 36899999999999999999999999664 46 999999999999999999997
No 13
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.12 E-value=1.6e-10 Score=137.85 Aligned_cols=120 Identities=23% Similarity=0.261 Sum_probs=107.5
Q ss_pred CeeeecCCCceEecCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEeccCCCCCCcCCCChhHHHH
Q 003428 564 RVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEH 643 (820)
Q Consensus 564 ~I~VftP~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l~~~L~~gd~VeIlT~~~~~~~~~~~p~~~WL~~ 643 (820)
+|.|..|+|.++++|.|+|++|+|+.+++..++.+++|+|||++++|+++|.+++.||++|..++
T Consensus 1 ~~~i~~~~g~~~~~~~gtt~~dia~~~~~~~~~~~v~a~vng~l~dL~~~l~~d~~Vefi~~~~~--------------- 65 (638)
T PRK00413 1 MIKITLPDGSVREFEAGVTVADVAASISPGLAKAAVAGKVNGELVDLSTPIEEDASLEIITAKDE--------------- 65 (638)
T ss_pred CcEEEeCCCCEEEeCCCCCHHHHHHHhhhhchhheEEEEECCEEeeCCccccCCCceeeeeccch---------------
Confidence 46788999999999999999999999999999999999999999999999999999999997643
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC---ccccccccccC----CchhHHHHHHHHhhc
Q 003428 644 AKTRSARHKIMKFLREQAALSASEITADTVGDFVADSGEES---EVEDLSDGSKQ----DKPLWEKILMNVVQM 710 (820)
Q Consensus 644 v~T~~Ar~~ir~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~fy~~i~~----~~~~~~~i~~~~~~~ 710 (820)
.++...+| ++.|+...|+.+.|++.++.. .+++||++++. ++.++.+|++.|.+.
T Consensus 66 ----~g~~~y~h--------S~~hll~~A~~~~~~~~~~~~~~~~~~g~y~d~~~~~~lt~e~l~~Ie~~m~~i 127 (638)
T PRK00413 66 ----EGLEIIRH--------SAAHLLAQAVKRLYPDAKLTIGPVIENGFYYDFDRERPFTPEDLEAIEKEMKEI 127 (638)
T ss_pred ----hhHHHHhh--------hHHHHHHHHHHHHcCCceEEECCccCCeEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 68899999 999999999999998765544 46999999954 556799999999876
No 14
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=98.97 E-value=1.4e-09 Score=89.72 Aligned_cols=60 Identities=63% Similarity=1.042 Sum_probs=57.7
Q ss_pred eeeecCCCceEecCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEe
Q 003428 565 VFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (820)
Q Consensus 565 I~VftP~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l~~~L~~gd~VeIlT 624 (820)
||||+|+|+.+++|.|.|+.|++..++..+....+++++||++++++++|.+||.||++|
T Consensus 1 ~~~~~~~g~~~~~~~~~t~~~~~~~~~~~~~~~~va~~vng~~vdl~~~l~~~~~ve~v~ 60 (60)
T cd01668 1 IYVFTPKGEIIELPAGATVLDFAYAIHTEIGNRCVGAKVNGKLVPLSTVLKDGDIVEIIT 60 (60)
T ss_pred CEEECCCCCEEEcCCCCCHHHHHHHHChHhhhheEEEEECCEECCCCCCCCCCCEEEEEC
Confidence 689999999999999999999999999988889999999999999999999999999986
No 15
>PLN02908 threonyl-tRNA synthetase
Probab=98.89 E-value=1.2e-08 Score=122.95 Aligned_cols=145 Identities=19% Similarity=0.176 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCchhhhhhhcccccCCCeeeecCCCceEecCC-CCcHhHHHhhcccccccceEEEEE
Q 003428 525 NIALRISWLNAIREWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPK-GATVVDYAYMIHTEIGNKMVAAKV 603 (820)
Q Consensus 525 ~~~~~~~wl~~l~e~~~~~~~~~~~~ef~~~~k~dL~~~~I~VftP~G~i~~lP~-GaT~lDfAy~Iht~lg~~~~~akV 603 (820)
-+..|+.-++++.+-|.+. +... -.++|.|..|+|.+++.|+ |+||.|+|..|...+...+++|+|
T Consensus 25 ~~~~r~~~f~~~~~~~~~~---------~~~~----~~~~i~i~~~dg~~~~~~~~~tt~~~ia~~i~~~~~~~~v~a~V 91 (686)
T PLN02908 25 VIKKRIELFEKIQARQLAR---------LESA----GGDPIKVTLPDGAVKDGKKWVTTPMDIAKEISKGLANSALIAQV 91 (686)
T ss_pred hHHHHHHHHHHHHHHHHHH---------hhhc----cCCceEEEeCCCceEeecCCCCCHHHHHHHhCccchhhcEEEEE
Confidence 3456777666665544332 1111 2347899999999999995 599999999999999999999999
Q ss_pred CCEecCCCccCCCCCeEEEEeccCCCCCCcCCCChhHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 003428 604 NGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITADTVGDFVADSGEE 683 (820)
Q Consensus 604 NG~~v~l~~~L~~gd~VeIlT~~~~~~~~~~~p~~~WL~~v~T~~Ar~~ir~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 683 (820)
||++++|+++|+.+..|+++|.+++ .|+..+|| +++|+...|+++.| +.++.
T Consensus 92 ng~l~dL~~~l~~d~~le~l~~~~~-------------------eg~~~y~h--------S~ahlL~~A~~~~~-~~~l~ 143 (686)
T PLN02908 92 DGVLWDMTRPLEGDCKLKLFKFDDD-------------------EGRDTFWH--------SSAHILGEALELEY-GCKLC 143 (686)
T ss_pred CCEEeecCccccCCCeeEEeccccH-------------------HHHHHHHH--------HHHHHHHHHHHHHh-CCeEE
Confidence 9999999999999999999997653 79999999 99999999999988 44444
Q ss_pred C---cc--ccccccccC-----CchhHHHHHHHHhhc
Q 003428 684 S---EV--EDLSDGSKQ-----DKPLWEKILMNVVQM 710 (820)
Q Consensus 684 ~---~~--~~fy~~i~~-----~~~~~~~i~~~~~~~ 710 (820)
+ ++ ++|||++.. ++.++.+|++.|.+.
T Consensus 144 ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~i 180 (686)
T PLN02908 144 IGPCTTRGEGFYYDAFYGDRTLNEEDFKPIEARAEKA 180 (686)
T ss_pred ecCccccCCcEEEEeecCCCCCCHHHHHHHHHHHHHH
Confidence 3 44 999999752 567899999999887
No 16
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=98.88 E-value=6.5e-09 Score=124.38 Aligned_cols=122 Identities=24% Similarity=0.218 Sum_probs=109.3
Q ss_pred CCCeeeecCCCceEecCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEeccCCCCCCcCCCChhHH
Q 003428 562 GSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWL 641 (820)
Q Consensus 562 ~~~I~VftP~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l~~~L~~gd~VeIlT~~~~~~~~~~~p~~~WL 641 (820)
+++|.|..|+|..+++|+|.|+.|+|..+........++|+|||++++|+++|..+..|+++|.++.
T Consensus 3 ~~mi~i~~~~~~~~~~~~g~t~~~ia~~~~~~~~~~iv~a~vn~~l~dL~~~i~~d~~i~fv~~~~~------------- 69 (639)
T PRK12444 3 EQMIEIKFPDGSVKEFVKGITLEEIAGSISSSLKKKAVAGKVNDKLYDLRRNLEEDAEVEIITIDSN------------- 69 (639)
T ss_pred CCCeEEEeCCCCEEEecCCCCHHHHHHHhhhhcchheEEEEECCEEEEcCcccCCCCeEEEecCCCh-------------
Confidence 4678999999999999999999999999999999999999999999999999999999999997643
Q ss_pred HHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC---ccccccccccC----CchhHHHHHHHHhhc
Q 003428 642 EHAKTRSARHKIMKFLREQAALSASEITADTVGDFVADSGEES---EVEDLSDGSKQ----DKPLWEKILMNVVQM 710 (820)
Q Consensus 642 ~~v~T~~Ar~~ir~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~fy~~i~~----~~~~~~~i~~~~~~~ 710 (820)
.|...+|| +++|+...|+.+.|+..++.+ .+++||++++. ++.++.+|++.|.+.
T Consensus 70 ------~g~~iy~h--------S~~hlL~~A~~~~~~~~~~~i~~~~~~g~y~d~~~~~~it~edl~~Ie~~m~ei 131 (639)
T PRK12444 70 ------EGVEIARH--------SAAHILAQAVKRLYGDVNLGVGPVIENGFYYDMDLPSSVNVEDLRKIEKEMKKI 131 (639)
T ss_pred ------HHHHHHHH--------HHHHHHHHHHHHHcCCcEEEeCCcCCCeEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 78899999 999999999999999865543 57999999954 567899999999877
No 17
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.59 E-value=1.2e-07 Score=76.50 Aligned_cols=59 Identities=44% Similarity=0.771 Sum_probs=55.3
Q ss_pred eeecCCCceEecCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEe
Q 003428 566 FVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (820)
Q Consensus 566 ~VftP~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l~~~L~~gd~VeIlT 624 (820)
.++.++|+.+.+|+|+|+.|++..+|..+....+++++||++++|+++|.+||.|+++|
T Consensus 2 ~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~vn~~~~~l~~~l~~~~~i~~i~ 60 (60)
T cd01616 2 IIFTPDGSAVELPKGATAMDFALKIHTDLGKGFIGALVNGQLVDLSYTLQDGDTVSIVT 60 (60)
T ss_pred EEECCCCCEEEcCCCCCHHHHHHHHHHHHHhheEEEEECCEECCCCcCcCCCCEEEEeC
Confidence 46778899999999999999999999988889999999999999999999999999986
No 18
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.44 E-value=2.7e-07 Score=81.19 Aligned_cols=52 Identities=23% Similarity=0.304 Sum_probs=49.3
Q ss_pred ceEecCCCCcHhHHHhhcccccccceEEEEECC-EecCCCccCCCCCeEEEEe
Q 003428 573 EIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNG-NLVSPTHVLANAEVVEIIT 624 (820)
Q Consensus 573 ~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG-~~v~l~~~L~~gd~VeIlT 624 (820)
+.+.||+|+|+.|||+.||++++...+.|.|-| +.+.+++.|++||+|+|+|
T Consensus 24 ~~~~l~~g~tv~d~a~~IH~d~~~~F~~A~v~~~~~vg~d~~l~d~DVv~i~~ 76 (76)
T cd04938 24 DCVLVKKGTTVGDVARKIHGDLEKGFIEAVGGRRRLEGKDVILGKNDILKFKT 76 (76)
T ss_pred eeEEEcCCCCHHHHHHHHhHHHHhccEEEEEccCEEECCCEEecCCCEEEEEC
Confidence 688999999999999999999999999999988 8999999999999999985
No 19
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=98.43 E-value=5.4e-07 Score=73.14 Aligned_cols=59 Identities=42% Similarity=0.567 Sum_probs=55.3
Q ss_pred eeecCCCceEecCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEe
Q 003428 566 FVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (820)
Q Consensus 566 ~VftP~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l~~~L~~gd~VeIlT 624 (820)
.+..|+|..+.+|.|+|+.|+|+.++...+...++|+|||++++|.++|.+|+.||+++
T Consensus 2 ~i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~v~~~vng~~~dL~~~l~~~~~ie~i~ 60 (61)
T cd01667 2 KITLPDGSVKEFPKGTTPLDIAKSISPGLAKKAVAAKVNGELVDLSRPLEEDCELEIIT 60 (61)
T ss_pred EEEcCCCCEEEeCCCCCHHHHHHHHHHHHHhheEEEEECCEEecCCcCcCCCCEEEEEe
Confidence 46678899999999999999999999988899999999999999999999999999987
No 20
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.38 E-value=2.6e-07 Score=104.77 Aligned_cols=63 Identities=30% Similarity=0.500 Sum_probs=53.7
Q ss_pred CCeeeecC---------CC----ceEecCCCCcHhHHHhhcccccccceEEEEE--CCEecCCCccCCCCCeEEEEec
Q 003428 563 SRVFVFTP---------RG----EIKNLPKGATVVDYAYMIHTEIGNKMVAAKV--NGNLVSPTHVLANAEVVEIITY 625 (820)
Q Consensus 563 ~~I~VftP---------~G----~i~~lP~GaT~lDfAy~Iht~lg~~~~~akV--NG~~v~l~~~L~~gd~VeIlT~ 625 (820)
+-|.|||- +| +.+.||+|+|+.||||.||+++|++++.|.. +++.++++|+|++||+|+|+|+
T Consensus 318 ~li~~yt~~~~~~~~~~~g~~~~~~~~l~~g~t~~d~A~~IH~d~~~~fi~A~~~~~~~~~g~~~~l~dgDiv~i~~~ 395 (396)
T PRK09602 318 DMIVVYPVEDENKLTDKKGNVLPDAFLLPKGSTARDLAYKIHTDIGEGFLYAIDARTKRRIGEDYELKDGDVIKIVST 395 (396)
T ss_pred CCEEEEecCcccccccccCcccceeEEECCCCCHHHHHHHHHHHHHhhceehhcccCCcccCCCcEecCCCEEEEEeC
Confidence 46778882 22 3899999999999999999999999764432 7899999999999999999995
No 21
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=98.00 E-value=1.3e-05 Score=81.24 Aligned_cols=73 Identities=22% Similarity=0.364 Sum_probs=57.8
Q ss_pred hcCCccccCC--cccchHHHHHHHHHHcCCCHHHHHHHhhccc---cccCCC-------------CCHHHHHHHhChHHH
Q 003428 160 HDGQKRRSGE--PFIIHPVEVARILGELELDWESIAAGLLHDT---VEDTNV-------------VTFERIEEEFGATVR 221 (820)
Q Consensus 160 H~gQ~RksGe--PYi~Hpl~VA~ILaelglD~~tIiAALLHDv---VEDT~~-------------~T~eeI~~~FG~~Va 221 (820)
+.|+...+|+ |++.|++++|.+..+-|.|++.|+||||||+ ++|+.. +..+.|+..||+.|+
T Consensus 13 ~~g~~~y~Ge~Vs~leH~LQ~A~lA~~~Gad~elvvAALLHDIGhll~~~~~~~~~~g~~~~He~iga~~Lr~~F~~~V~ 92 (179)
T TIGR03276 13 EHGARQYGGEAVSQLEHALQCAQLAEAAGADDELIVAAFLHDIGHLLADEGATPMGRGGDDHHEELAADYLRELFSPSVT 92 (179)
T ss_pred hcCccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcchhhhcccccccccCCCccHHHHHHHHHHHHcCHHHH
Confidence 4455555776 5899999999988899999999999999998 775431 124678888999999
Q ss_pred HHHhhhccccc
Q 003428 222 RIVEGETKVSK 232 (820)
Q Consensus 222 ~LV~glTkvs~ 232 (820)
.+|..-...++
T Consensus 93 ~lV~~Hv~aKr 103 (179)
T TIGR03276 93 EPIRLHVQAKR 103 (179)
T ss_pred HHHHHHHHHHH
Confidence 99998765444
No 22
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=2.3e-06 Score=95.88 Aligned_cols=107 Identities=16% Similarity=0.145 Sum_probs=90.8
Q ss_pred cCCCceEecCC-CCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEeccCCCCCCcCCCChhHHHHhhcc
Q 003428 569 TPRGEIKNLPK-GATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTR 647 (820)
Q Consensus 569 tP~G~i~~lP~-GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l~~~L~~gd~VeIlT~~~~~~~~~~~p~~~WL~~v~T~ 647 (820)
.|+|.+++.-. +.||.|+|-. ...+++.++.++|||.+++|++||+..- +|+++-++.
T Consensus 5 Lpdg~~~~~~~w~ttp~~ia~~-s~~la~~~~~~~vn~~~~Dl~rp~e~~~-lell~f~~~------------------- 63 (560)
T KOG1637|consen 5 LPDGKVVEGVSWETTPYDIACQ-SKGLADDAVIAKVNGVLWDLDRPLEGDC-LELLKFDDD------------------- 63 (560)
T ss_pred cCCcceeeeeeccCChhHHhhh-ccchhhhhHHHhhcCceeccCCcchhhH-HHHccCCCc-------------------
Confidence 99998877655 8899999999 8999999999999999999999998666 999998765
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC---Ccccccccccc--CCchhHHHHHH
Q 003428 648 SARHKIMKFLREQAALSASEITADTVGDFVADSGEE---SEVEDLSDGSK--QDKPLWEKILM 705 (820)
Q Consensus 648 ~Ar~~ir~~l~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~fy~~i~--~~~~~~~~i~~ 705 (820)
.||..+|| |++|++-+++++.+.. .+- .+++||||++- .+.++|++|+.
T Consensus 64 ~~k~vfwh--------ssahvlg~a~e~~~g~-~lc~Gpp~~~gf~yd~~~~i~~~d~~~~e~ 117 (560)
T KOG1637|consen 64 EGKDVFWH--------SSAHVLGEALEQEYGA-HLCIGPPIEEGFYYDMLDEISSNDFPSIEA 117 (560)
T ss_pred ccceeeee--------hhhhHhhHHHHHhcCe-eEeeCCCCcCceehhhhccccccccccccc
Confidence 89999999 9999999999998874 232 37899999982 14556777765
No 23
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.40 E-value=0.00012 Score=79.91 Aligned_cols=62 Identities=35% Similarity=0.493 Sum_probs=53.5
Q ss_pred CCeeeec-CCC------ceEecCCCCcHhHHHhhcccccccceEEEEE-------CCEecCCCccCCCCCeEEEEe
Q 003428 563 SRVFVFT-PRG------EIKNLPKGATVVDYAYMIHTEIGNKMVAAKV-------NGNLVSPTHVLANAEVVEIIT 624 (820)
Q Consensus 563 ~~I~Vft-P~G------~i~~lP~GaT~lDfAy~Iht~lg~~~~~akV-------NG~~v~l~~~L~~gd~VeIlT 624 (820)
+-|.||| |+| +.+-|.+|+|+.|+|-.||.++.....-|.| +|+.|.++|+|+++|+|+|+.
T Consensus 289 ~liRVYtK~~g~~pd~~~PlIlr~GsTV~Dvc~~IH~~l~~~FryA~VWGkSvk~~~QrVG~dHvLeD~DIV~I~~ 364 (365)
T COG1163 289 GLIRVYTKPPGEEPDFDEPLILRRGSTVGDVCRKIHRDLVENFRYARVWGKSVKHPGQRVGLDHVLEDEDIVEIHA 364 (365)
T ss_pred CeEEEEecCCCCCCCCCCCeEEeCCCcHHHHHHHHHHHHHHhcceEEEeccCCCCCccccCcCcCccCCCeEEEee
Confidence 3577888 445 5778899999999999999999999887777 677899999999999999974
No 24
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=97.33 E-value=0.00063 Score=57.79 Aligned_cols=54 Identities=31% Similarity=0.498 Sum_probs=46.1
Q ss_pred CCCceEecCCCCcHhHHHhhcccccccceEEEEECCEecC----CCccCCCCCeEEEEec
Q 003428 570 PRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS----PTHVLANAEVVEIITY 625 (820)
Q Consensus 570 P~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~----l~~~L~~gd~VeIlT~ 625 (820)
=+|+.+++|+|.|..|+.-... +-...++..+||++++ .+++|++||+|||++.
T Consensus 5 vNG~~~~~~~~~tl~~lL~~l~--~~~~~vav~vNg~iv~r~~~~~~~l~~gD~vei~~~ 62 (66)
T PRK05659 5 LNGEPRELPDGESVAALLAREG--LAGRRVAVEVNGEIVPRSQHASTALREGDVVEIVHA 62 (66)
T ss_pred ECCeEEEcCCCCCHHHHHHhcC--CCCCeEEEEECCeEeCHHHcCcccCCCCCEEEEEEE
Confidence 3789999999999999986653 3456778889999999 9999999999999984
No 25
>PRK06437 hypothetical protein; Provisional
Probab=97.23 E-value=0.0011 Score=57.12 Aligned_cols=61 Identities=18% Similarity=0.123 Sum_probs=50.4
Q ss_pred CCeeeecCCCceEecCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEec
Q 003428 563 SRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (820)
Q Consensus 563 ~~I~VftP~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l~~~L~~gd~VeIlT~ 625 (820)
.+|+|--++-+.+++|+|.|+.|+.-.++-. ..-+++.+||++++.+++|++||.|||++-
T Consensus 3 ~~~~v~g~~~~~~~i~~~~tv~dLL~~Lgi~--~~~vaV~vNg~iv~~~~~L~dgD~Veiv~~ 63 (67)
T PRK06437 3 AMIRVKGHINKTIEIDHELTVNDIIKDLGLD--EEEYVVIVNGSPVLEDHNVKKEDDVLILEV 63 (67)
T ss_pred ceEEecCCcceEEEcCCCCcHHHHHHHcCCC--CccEEEEECCEECCCceEcCCCCEEEEEec
Confidence 3566765555889999999999999887654 345577799999999999999999999974
No 26
>PTZ00258 GTP-binding protein; Provisional
Probab=97.15 E-value=0.00053 Score=77.79 Aligned_cols=62 Identities=19% Similarity=0.302 Sum_probs=54.3
Q ss_pred Ceeeec--CC-CceEecCCCCcHhHHHhhcccccccceEEEEE----------------C-C--EecCCCccCCCCCeEE
Q 003428 564 RVFVFT--PR-GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKV----------------N-G--NLVSPTHVLANAEVVE 621 (820)
Q Consensus 564 ~I~Vft--P~-G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akV----------------N-G--~~v~l~~~L~~gd~Ve 621 (820)
-|.+|| || -+...+|+|+|+.|+|..|||+++...+.|.| - | +.+.-+|.|++||+|+
T Consensus 304 li~ffT~g~~e~raw~i~~Gsta~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkdYiv~DGDIi~ 383 (390)
T PTZ00258 304 LIHFFTAGPDEVRCWTIQKGTKAPQAAGVIHSDFEKGFICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVVQDGDIIF 383 (390)
T ss_pred CEEEEcCCCCceeEEEeCCCCcHHHHHhhhhhHHhhCcEEEEECcHHHHHHcCCHHHHHhcCceeeeCCceEecCCCEEE
Confidence 566777 22 37899999999999999999999999999999 3 6 7899999999999999
Q ss_pred EEec
Q 003428 622 IITY 625 (820)
Q Consensus 622 IlT~ 625 (820)
+..+
T Consensus 384 f~fn 387 (390)
T PTZ00258 384 FKFN 387 (390)
T ss_pred EEec
Confidence 9764
No 27
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=97.09 E-value=0.0013 Score=55.95 Aligned_cols=53 Identities=26% Similarity=0.427 Sum_probs=45.4
Q ss_pred CCceEecCCCCcHhHHHhhcccccccceEEEEECCEecCCC----ccCCCCCeEEEEec
Q 003428 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPT----HVLANAEVVEIITY 625 (820)
Q Consensus 571 ~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l~----~~L~~gd~VeIlT~ 625 (820)
+|+.+++|.+.|+.|+.-.+.- -...++..|||+.++.+ ++|++||.|+|++-
T Consensus 5 Ng~~~~~~~~~tv~~ll~~l~~--~~~~i~V~vNg~~v~~~~~~~~~L~~gD~V~ii~~ 61 (65)
T cd00565 5 NGEPREVEEGATLAELLEELGL--DPRGVAVALNGEIVPRSEWASTPLQDGDRIEIVTA 61 (65)
T ss_pred CCeEEEcCCCCCHHHHHHHcCC--CCCcEEEEECCEEcCHHHcCceecCCCCEEEEEEe
Confidence 5899999999999999766643 33556788999999999 89999999999984
No 28
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.0007 Score=80.16 Aligned_cols=82 Identities=20% Similarity=0.114 Sum_probs=67.2
Q ss_pred ceEEEEECCEecCCCccCCCCCeEEEEeccCCCCCCcCCCChhHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003428 597 KMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITADTVGDF 676 (820)
Q Consensus 597 ~~~~akVNG~~v~l~~~L~~gd~VeIlT~~~~~~~~~~~p~~~WL~~v~T~~Ar~~ir~~l~~~~~~~~~~~~~~~l~~~ 676 (820)
+++++++|| .+++.. +|+|..+. .|+..+|| +++|++++||+++
T Consensus 1 ~~~~~~~~~-~~~~~~--------~~~~~~~~-------------------~~~~~~rh--------s~ah~l~~av~~l 44 (589)
T COG0441 1 KALAIHVDG-ELDLKD--------EIITAEDE-------------------EGLEIIRH--------SCAHVLAQAVKRL 44 (589)
T ss_pred CceEEEccc-ceeccc--------cccCccCc-------------------cchhhhhh--------HHHHHHHHHHHHh
Confidence 367899999 888877 66665432 78999999 9999999999999
Q ss_pred hhhcCCC-CccccccccccC----CchhHHHHHHHHhhcCCCC
Q 003428 677 VADSGEE-SEVEDLSDGSKQ----DKPLWEKILMNVVQMSSPV 714 (820)
Q Consensus 677 ~~~~~~~-~~~~~fy~~i~~----~~~~~~~i~~~~~~~~~~~ 714 (820)
+|+..++ .++++||||++. +..|+.+|+..|.++.+++
T Consensus 45 ~p~~~~gp~ie~gfyyd~~~~~~~~~~dl~~ie~~m~~i~~~~ 87 (589)
T COG0441 45 YPDVTIGPVIEEGFYYDFDVKEPITPEDLLKIEKEMKEIAKEN 87 (589)
T ss_pred CCCccccCcccceeEEeeccCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9996554 388999999965 6778999999998874433
No 29
>PRK07440 hypothetical protein; Provisional
Probab=96.86 E-value=0.0031 Score=54.75 Aligned_cols=53 Identities=21% Similarity=0.407 Sum_probs=45.7
Q ss_pred CCceEecCCCCcHhHHHhhcccccccceEEEEECCEecC----CCccCCCCCeEEEEec
Q 003428 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS----PTHVLANAEVVEIITY 625 (820)
Q Consensus 571 ~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~----l~~~L~~gd~VeIlT~ 625 (820)
+|+.+++|.|.|..|+--.+. +-...+++.+||+++| -+++|++||.|||++.
T Consensus 10 NG~~~~~~~~~tl~~lL~~l~--~~~~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv~~ 66 (70)
T PRK07440 10 NGETRTCSSGTSLPDLLQQLG--FNPRLVAVEYNGEILHRQFWEQTQVQPGDRLEIVTI 66 (70)
T ss_pred CCEEEEcCCCCCHHHHHHHcC--CCCCeEEEEECCEEeCHHHcCceecCCCCEEEEEEE
Confidence 678999999999999875543 2346789999999999 8899999999999985
No 30
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=96.83 E-value=0.0031 Score=53.30 Aligned_cols=52 Identities=27% Similarity=0.388 Sum_probs=43.2
Q ss_pred CCceEecCCCCcHhHHHhhcccccccceEEEEECCEecCC----CccCCCCCeEEEEec
Q 003428 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSP----THVLANAEVVEIITY 625 (820)
Q Consensus 571 ~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l----~~~L~~gd~VeIlT~ 625 (820)
+|+.+++|.|+|+.|+--++... .-+..-|||+.++- +++|++||.|||++.
T Consensus 6 Ng~~~~~~~~~tl~~ll~~l~~~---~~~~v~vN~~~v~~~~~~~~~L~~gD~vei~~~ 61 (65)
T PRK06944 6 NQQTLSLPDGATVADALAAYGAR---PPFAVAVNGDFVARTQHAARALAAGDRLDLVQP 61 (65)
T ss_pred CCEEEECCCCCcHHHHHHhhCCC---CCeEEEECCEEcCchhcccccCCCCCEEEEEee
Confidence 68999999999999987655433 33678899999986 578999999999984
No 31
>PRK01777 hypothetical protein; Validated
Probab=96.82 E-value=0.0021 Score=59.14 Aligned_cols=54 Identities=22% Similarity=0.137 Sum_probs=41.7
Q ss_pred ceEecCCCCcHhHHHhhccc-----ccccceEEEEECCEecCCCccCCCCCeEEEEecc
Q 003428 573 EIKNLPKGATVVDYAYMIHT-----EIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYN 626 (820)
Q Consensus 573 ~i~~lP~GaT~lDfAy~Iht-----~lg~~~~~akVNG~~v~l~~~L~~gd~VeIlT~~ 626 (820)
...++|.|+|+.|..-+..- ++.-.....-|||+.++++++|++||.|||+-.=
T Consensus 19 ~~l~vp~GtTv~dal~~sgi~~~~pei~~~~~~vgI~Gk~v~~d~~L~dGDRVeIyrPL 77 (95)
T PRK01777 19 QRLTLQEGATVEEAIRASGLLELRTDIDLAKNKVGIYSRPAKLTDVLRDGDRVEIYRPL 77 (95)
T ss_pred EEEEcCCCCcHHHHHHHcCCCccCcccccccceEEEeCeECCCCCcCCCCCEEEEecCC
Confidence 36789999999999766542 3322223456899999999999999999997643
No 32
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=96.69 E-value=0.0053 Score=52.07 Aligned_cols=53 Identities=26% Similarity=0.453 Sum_probs=44.4
Q ss_pred CCceEecCCCCcHhHHHhhcccccccceEEEEECCEecCC----CccCCCCCeEEEEec
Q 003428 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSP----THVLANAEVVEIITY 625 (820)
Q Consensus 571 ~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l----~~~L~~gd~VeIlT~ 625 (820)
+|+.+++|.|.|+.|+.-.+.-. ...++..|||+.++- +++|++||.|||++-
T Consensus 4 Ng~~~~~~~~~tv~~ll~~l~~~--~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~~ 60 (64)
T TIGR01683 4 NGEPVEVEDGLTLAALLESLGLD--PRRVAVAVNGEIVPRSEWDDTILKEGDRIEIVTF 60 (64)
T ss_pred CCeEEEcCCCCcHHHHHHHcCCC--CCeEEEEECCEEcCHHHcCceecCCCCEEEEEEe
Confidence 68999999999999998776544 366788999999973 358999999999984
No 33
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=96.59 E-value=0.0057 Score=52.94 Aligned_cols=50 Identities=24% Similarity=0.294 Sum_probs=43.2
Q ss_pred eEecCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEec
Q 003428 574 IKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (820)
Q Consensus 574 i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l~~~L~~gd~VeIlT~ 625 (820)
.+++|.|.|+.|+.-.+.- -...+...+||++++.+++|+.||.|+|++-
T Consensus 17 ~~~~~~~~tv~~ll~~l~~--~~~~v~v~vNg~iv~~~~~l~~gD~Veii~~ 66 (70)
T PRK08364 17 EIEWRKGMKVADILRAVGF--NTESAIAKVNGKVALEDDPVKDGDYVEVIPV 66 (70)
T ss_pred EEEcCCCCcHHHHHHHcCC--CCccEEEEECCEECCCCcCcCCCCEEEEEcc
Confidence 6788999999999877743 3366889999999999999999999999973
No 34
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=96.59 E-value=0.0053 Score=52.80 Aligned_cols=53 Identities=21% Similarity=0.419 Sum_probs=45.1
Q ss_pred CCceEecCCC-CcHhHHHhhcccccccceEEEEECCEecCCC----ccCCCCCeEEEEec
Q 003428 571 RGEIKNLPKG-ATVVDYAYMIHTEIGNKMVAAKVNGNLVSPT----HVLANAEVVEIITY 625 (820)
Q Consensus 571 ~G~i~~lP~G-aT~lDfAy~Iht~lg~~~~~akVNG~~v~l~----~~L~~gd~VeIlT~ 625 (820)
+|+.+++|.+ +|+.|+--.+.- -...+++.+||+++|-+ +.|++||.|||++.
T Consensus 6 NG~~~~~~~~~~tv~~lL~~l~~--~~~~vav~vN~~iv~r~~w~~~~L~~gD~iEIv~~ 63 (67)
T PRK07696 6 NGNQIEVPESVKTVAELLTHLEL--DNKIVVVERNKDILQKDDHTDTSVFDGDQIEIVTF 63 (67)
T ss_pred CCEEEEcCCCcccHHHHHHHcCC--CCCeEEEEECCEEeCHHHcCceecCCCCEEEEEEE
Confidence 6889999999 799998765543 34577899999999999 88999999999985
No 35
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=96.52 E-value=0.008 Score=51.37 Aligned_cols=53 Identities=11% Similarity=0.211 Sum_probs=44.1
Q ss_pred CCceEecCCCCcHhHHHhhcccccccceEEEEECCEecC----CCccCCCCCeEEEEec
Q 003428 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS----PTHVLANAEVVEIITY 625 (820)
Q Consensus 571 ~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~----l~~~L~~gd~VeIlT~ 625 (820)
+|+.+++|.|.|..|+--.+.- -...++.-|||++|| -++.|++||.|||++.
T Consensus 6 Ng~~~~~~~~~tl~~ll~~l~~--~~~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii~~ 62 (66)
T PRK08053 6 NDQPMQCAAGQTVHELLEQLNQ--LQPGAALAINQQIIPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_pred CCeEEEcCCCCCHHHHHHHcCC--CCCcEEEEECCEEeChHHcCccccCCCCEEEEEEE
Confidence 7899999999999998765433 235689999999999 5568999999999984
No 36
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=96.24 E-value=0.012 Score=50.90 Aligned_cols=52 Identities=25% Similarity=0.454 Sum_probs=44.6
Q ss_pred CceEecCCCCcHhHHHhhcccccccceEEEEECCEecC----CCccCCCCCeEEEEec
Q 003428 572 GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS----PTHVLANAEVVEIITY 625 (820)
Q Consensus 572 G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~----l~~~L~~gd~VeIlT~ 625 (820)
|+..+++.+.|..|+--.+. +-..-+++.+||.+|| .++.|++||.|||++-
T Consensus 9 g~~~e~~~~~tv~dLL~~l~--~~~~~vav~vNg~iVpr~~~~~~~l~~gD~ievv~~ 64 (68)
T COG2104 9 GKEVEIAEGTTVADLLAQLG--LNPEGVAVAVNGEIVPRSQWADTILKEGDRIEVVRV 64 (68)
T ss_pred CEEEEcCCCCcHHHHHHHhC--CCCceEEEEECCEEccchhhhhccccCCCEEEEEEe
Confidence 89999999999999854443 2336789999999999 9999999999999984
No 37
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=96.00 E-value=0.018 Score=48.89 Aligned_cols=52 Identities=25% Similarity=0.339 Sum_probs=41.9
Q ss_pred CCceEecCCCCcHhHHHhhcccccccceEEEEECCEecCC----CccCCCCCeEEEEec
Q 003428 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSP----THVLANAEVVEIITY 625 (820)
Q Consensus 571 ~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l----~~~L~~gd~VeIlT~ 625 (820)
+|+.+++ .+.|+.|+--.+. +....+++-|||+++|. +++|++||.|||++.
T Consensus 6 Ng~~~~~-~~~tl~~Ll~~l~--~~~~~vavavN~~iv~~~~~~~~~L~dgD~Ieiv~~ 61 (65)
T PRK06488 6 NGETLQT-EATTLALLLAELD--YEGNWLATAVNGELVHKEARAQFVLHEGDRIEILSP 61 (65)
T ss_pred CCeEEEc-CcCcHHHHHHHcC--CCCCeEEEEECCEEcCHHHcCccccCCCCEEEEEEe
Confidence 5788899 4579998865543 33366789999999998 789999999999984
No 38
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=95.55 E-value=0.022 Score=50.44 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=42.8
Q ss_pred CceEecCCCCcHhHHHhhc---cccccc--ceEEEEECCEecCCCccCCCCCeEEEEe
Q 003428 572 GEIKNLPKGATVVDYAYMI---HTEIGN--KMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (820)
Q Consensus 572 G~i~~lP~GaT~lDfAy~I---ht~lg~--~~~~akVNG~~v~l~~~L~~gd~VeIlT 624 (820)
+..+++|.|+|+-|+--.+ |+.+.. ..+..-|||+.++.+++|++||.|+|+.
T Consensus 20 ~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~~~l~dgDeVai~P 77 (82)
T PLN02799 20 DMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTESAALKDGDELAIIP 77 (82)
T ss_pred eEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCCcCcCCCCEEEEeC
Confidence 4678899999998886555 555544 3456789999999999999999999986
No 39
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=95.30 E-value=0.023 Score=64.11 Aligned_cols=61 Identities=23% Similarity=0.321 Sum_probs=48.6
Q ss_pred CeeeecCCC---ceEecCCCCcHhHHHhhcccccccceEEEEE-----------------CCE--ecCCCccCCCCCeEE
Q 003428 564 RVFVFTPRG---EIKNLPKGATVVDYAYMIHTEIGNKMVAAKV-----------------NGN--LVSPTHVLANAEVVE 621 (820)
Q Consensus 564 ~I~VftP~G---~i~~lP~GaT~lDfAy~Iht~lg~~~~~akV-----------------NG~--~v~l~~~L~~gd~Ve 621 (820)
.|.+||--- +...+|+|+|+.|+|+.|||+++...+.|.| .|+ +..-+|.+++||+|.
T Consensus 280 li~fftvg~~evrawti~~GstA~~aAg~IHsD~~kgFI~AeVi~~~d~~~~g~~~~ak~~gk~rleGkdY~v~DGDIi~ 359 (364)
T PRK09601 280 LITYFTAGPKEVRAWTIKKGTTAPQAAGVIHTDFEKGFIRAEVISYDDLIEYGSEAGAKEAGKVRLEGKDYIVQDGDVMH 359 (364)
T ss_pred CEEEecCCCCeEEEEEeCCCCchHHHhhcchhhHhhccEEEEEecHHHHHHcCCHHHHHHccceeccCCceEecCCCEEE
Confidence 555666321 5789999999999999999999999998874 133 336688999999999
Q ss_pred EEe
Q 003428 622 IIT 624 (820)
Q Consensus 622 IlT 624 (820)
|-.
T Consensus 360 f~f 362 (364)
T PRK09601 360 FRF 362 (364)
T ss_pred EEc
Confidence 864
No 40
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=95.28 E-value=0.012 Score=52.88 Aligned_cols=52 Identities=27% Similarity=0.282 Sum_probs=29.9
Q ss_pred eEecCCCCcHhHHHh-----hcccccccceEEEEECCEecCCCccCCCCCeEEEEec
Q 003428 574 IKNLPKGATVVDYAY-----MIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (820)
Q Consensus 574 i~~lP~GaT~lDfAy-----~Iht~lg~~~~~akVNG~~v~l~~~L~~gd~VeIlT~ 625 (820)
-++||.|+|+.|.-- .-++++.-.....=|=|+.++++++|++||.|||.-.
T Consensus 17 ~l~vp~GtTv~~Ai~~Sgi~~~~p~idl~~~~vGIfGk~~~~d~~L~~GDRVEIYRP 73 (84)
T PF03658_consen 17 TLEVPEGTTVAQAIEASGILEQFPEIDLEKNKVGIFGKLVKLDTVLRDGDRVEIYRP 73 (84)
T ss_dssp EEEEETT-BHHHHHHHHTHHHH-TT--TTTSEEEEEE-S--TT-B--TT-EEEEE-S
T ss_pred EEECCCcCcHHHHHHHcCchhhCcccCcccceeeeeeeEcCCCCcCCCCCEEEEecc
Confidence 578999999999643 3456664444444567999999999999999999754
No 41
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=94.98 E-value=0.054 Score=48.86 Aligned_cols=54 Identities=7% Similarity=0.155 Sum_probs=45.0
Q ss_pred CCCceEecCCCCcHhHHHhhcccccccceEEEEECCEecCCC----ccCCCCCeEEEEec
Q 003428 570 PRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPT----HVLANAEVVEIITY 625 (820)
Q Consensus 570 P~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l~----~~L~~gd~VeIlT~ 625 (820)
=+|+.++++.+.|..|+--.. ++-..-++.-+||.+||-+ +.|++||.|||++.
T Consensus 23 VNG~~~~~~~~~tl~~LL~~l--~~~~~~vAVevNg~iVpr~~w~~t~L~egD~IEIv~~ 80 (84)
T PRK06083 23 INDQSIQVDISSSLAQIIAQL--SLPELGCVFAINNQVVPRSEWQSTVLSSGDAISLFQA 80 (84)
T ss_pred ECCeEEEcCCCCcHHHHHHHc--CCCCceEEEEECCEEeCHHHcCcccCCCCCEEEEEEE
Confidence 378999999999999986654 3455677889999999965 46999999999985
No 42
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=94.82 E-value=0.059 Score=45.97 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=43.3
Q ss_pred CCceEecCCCCcHhHHHhhcccccccceEEEEECCEecCCC---ccCCCCCeEEEEec
Q 003428 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPT---HVLANAEVVEIITY 625 (820)
Q Consensus 571 ~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l~---~~L~~gd~VeIlT~ 625 (820)
+|+.+++|++.|..|+--...- -...++.-+||.++|-. +.|++||.|||++.
T Consensus 6 NG~~~~~~~~~tl~~ll~~l~~--~~~~vav~~N~~iv~r~~~~~~L~~gD~ieIv~~ 61 (65)
T PRK05863 6 NEEQVEVDEQTTVAALLDSLGF--PEKGIAVAVDWSVLPRSDWATKLRDGARLEVVTA 61 (65)
T ss_pred CCEEEEcCCCCcHHHHHHHcCC--CCCcEEEEECCcCcChhHhhhhcCCCCEEEEEee
Confidence 7899999999999999766533 34678899999977643 36999999999984
No 43
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=94.54 E-value=0.066 Score=46.67 Aligned_cols=53 Identities=30% Similarity=0.283 Sum_probs=42.8
Q ss_pred ceEecCCCCcHhHHHhhcccc------cccceEEEEECCEecCCCccCCCCCeEEEEec
Q 003428 573 EIKNLPKGATVVDYAYMIHTE------IGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (820)
Q Consensus 573 ~i~~lP~GaT~lDfAy~Iht~------lg~~~~~akVNG~~v~l~~~L~~gd~VeIlT~ 625 (820)
..+++|.|+|+.|+--.+-.. .....+.+-|||+.++.+++|++||.|.|++.
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~~~l~~gD~v~i~pp 76 (80)
T cd00754 18 EELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLDTPLKDGDEVAIIPP 76 (80)
T ss_pred EEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCCcccCCCCEEEEeCC
Confidence 456888999999987666433 22456788899999999999999999999873
No 44
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=94.40 E-value=0.086 Score=47.25 Aligned_cols=48 Identities=31% Similarity=0.344 Sum_probs=42.4
Q ss_pred eEecCCCCcHhHHHhhc---ccccccceEEEEECCEecCCCccCCCCCeEEEEec
Q 003428 574 IKNLPKGATVVDYAYMI---HTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (820)
Q Consensus 574 i~~lP~GaT~lDfAy~I---ht~lg~~~~~akVNG~~v~l~~~L~~gd~VeIlT~ 625 (820)
...++.++|+-|..-++ |+++|- ..|||+.|++++.|++||.|.|...
T Consensus 26 ~~~~~~~~tvkd~IEsLGVP~tEV~~----i~vNG~~v~~~~~~~~Gd~v~V~P~ 76 (81)
T PF14451_consen 26 THPFDGGATVKDVIESLGVPHTEVGL----ILVNGRPVDFDYRLKDGDRVAVYPV 76 (81)
T ss_pred EEecCCCCcHHHHHHHcCCChHHeEE----EEECCEECCCcccCCCCCEEEEEec
Confidence 46889999999998887 888874 5699999999999999999999764
No 45
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=94.12 E-value=0.052 Score=47.46 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=21.1
Q ss_pred Cceee-EEEEEEecccchHHHHHHHhhc
Q 003428 793 GHSIQ-WFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 793 ~~sf~-~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
...|. +|+|.+.||.|+|+|||++|++
T Consensus 2 ~~~f~~~l~i~~~dr~GlL~dI~~~i~~ 29 (80)
T PF13291_consen 2 NKSFPVRLRIEAEDRPGLLADITSVISE 29 (80)
T ss_dssp ---EEEEEEEEEE--TTHHHHHHHHHHC
T ss_pred CcEEEEEEEEEEEcCCCHHHHHHHHHHH
Confidence 46799 9999999999999999999985
No 46
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=93.78 E-value=0.13 Score=57.03 Aligned_cols=53 Identities=25% Similarity=0.374 Sum_probs=45.4
Q ss_pred CCceEecCCCCcHhHHHhhcccccccceEEEEECCEecC----CCccCCCCCeEEEEec
Q 003428 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS----PTHVLANAEVVEIITY 625 (820)
Q Consensus 571 ~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~----l~~~L~~gd~VeIlT~ 625 (820)
+|+.++++.|.|..|+--...- -.+-++..|||++|+ .+++|++||.|||++-
T Consensus 6 NGk~~el~e~~TL~dLL~~L~i--~~~~VAVeVNgeIVpr~~w~~t~LkeGD~IEII~~ 62 (326)
T PRK11840 6 NGEPRQVPAGLTIAALLAELGL--APKKVAVERNLEIVPRSEYGQVALEEGDELEIVHF 62 (326)
T ss_pred CCEEEecCCCCcHHHHHHHcCC--CCCeEEEEECCEECCHHHcCccccCCCCEEEEEEE
Confidence 6899999999999999766543 345678889999999 7779999999999996
No 47
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=93.49 E-value=0.099 Score=45.14 Aligned_cols=53 Identities=28% Similarity=0.379 Sum_probs=45.1
Q ss_pred ceEecCCCCcHhHHHhhccccccc----ceEEEEECCEecCC---CccCCCCCeEEEEec
Q 003428 573 EIKNLPKGATVVDYAYMIHTEIGN----KMVAAKVNGNLVSP---THVLANAEVVEIITY 625 (820)
Q Consensus 573 ~i~~lP~GaT~lDfAy~Iht~lg~----~~~~akVNG~~v~l---~~~L~~gd~VeIlT~ 625 (820)
....+|.|+|+.|+--.+...... ..+..-|||+.++. +++|++||.|.|++.
T Consensus 14 ~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~~~~~~~l~~gD~V~i~pp 73 (77)
T PF02597_consen 14 EEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPDDGLDTPLKDGDEVAILPP 73 (77)
T ss_dssp EEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGGGTTTSBEETTEEEEEEES
T ss_pred eEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCCccCCcCcCCCCEEEEECC
Confidence 577889999999998887666642 55688899999999 999999999999973
No 48
>PRK14707 hypothetical protein; Provisional
Probab=91.11 E-value=1 Score=59.72 Aligned_cols=153 Identities=14% Similarity=0.114 Sum_probs=101.0
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeEEEEEecChHHHHHHHHh----cCCCC--
Q 003428 321 FMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTEIRSVCKEPYSIYKAVLK----SRGSI-- 394 (820)
Q Consensus 321 f~~l~P~~y~~i~~~l~~~r~~~e~~i~~~~~~L~~~L~~~~~l~~~~i~~~V~~R~K~~ySI~~Km~r----k~~~~-- 394 (820)
|+-+.|+.-....+.+...-..-|..|..+ |+..+...+ |-=.....|.|+..|+.+|+.. ++.++
T Consensus 2263 ~~~~~p~~~~~~a~~Ll~~A~~~Ep~ITp~---Lr~ia~~~~-----G~L~GLe~RLKS~~SLkrKL~~~~~~~~~slee 2334 (2710)
T PRK14707 2263 LRDVQPQDIALKAQTLLGRARQMEPQVTDM---LQNIAARHG-----GQLAGTQHQLKSYSSLQEKLKQRVALKKQSLEE 2334 (2710)
T ss_pred hccCCHHHHHHHHHHHHHHHHhccccccHH---HHHHHHHhc-----CcccchHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 455566666666666665544445555543 333332211 1112234689999999999953 34554
Q ss_pred --CccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhc-ccccccccccccccCCCCCCcceeEEEEeccCCCCce
Q 003428 395 --NEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHG-IWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMF 471 (820)
Q Consensus 395 --~eI~Di~giRIIv~~~~c~~~~~~~~~~~dCY~vlg~Ih~-~~~pip~r~kDyIa~PK~NGYqSLHttV~~~~~~~~~ 471 (820)
..|.|.+-.=||+++. .+...+..|++.+.. -|+-+ +++++-. .+.++|..+++++..++ |.
T Consensus 2335 Aaa~VnDALRYTVVLpp~---------~Fva~~r~Il~aL~~qGy~~v--kvkN~F~-~~~~~YkGINvtL~~pd---G~ 2399 (2710)
T PRK14707 2335 AAASVNDALRYSVVLEPQ---------GFTAGLRAVLAALDDQGHARV--KLTNQFT-EYSPSFKAINLTLRSPE---GA 2399 (2710)
T ss_pred HHHHhhhheeEEEEcCch---------hHHHHHHHHHHHHHHcCCeEE--EEeeccc-CCCCCccceEEEEEcCC---Cc
Confidence 6889987777777653 477889999988864 46544 6677663 34589999999997554 47
Q ss_pred eEEEEEechHHHHHHHHHHHhhccCccc
Q 003428 472 RLEVQIRTEEMDLIAERGIAAHYSGRVF 499 (820)
Q Consensus 472 ~vEVQIRT~~Mh~~AE~G~aahwkyK~~ 499 (820)
.+|||.=|..--..-+. .|=.||+.
T Consensus 2400 ~FEIQFHT~qSF~LK~r---~HdLYKQ~ 2424 (2710)
T PRK14707 2400 LWEIQFHTPETFALKER---FHDLYKRT 2424 (2710)
T ss_pred EEEEEeccHHHHHHHHH---HHHHHHHH
Confidence 99999999877666553 57778764
No 49
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=90.65 E-value=0.64 Score=40.94 Aligned_cols=52 Identities=25% Similarity=0.321 Sum_probs=39.6
Q ss_pred ceEecCCC-CcHhHHHhhc---cccccc--ceEEEEECCEecCCCccCCCCCeEEEEe
Q 003428 573 EIKNLPKG-ATVVDYAYMI---HTEIGN--KMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (820)
Q Consensus 573 ~i~~lP~G-aT~lDfAy~I---ht~lg~--~~~~akVNG~~v~l~~~L~~gd~VeIlT 624 (820)
..+++|.+ +|+-|+.-.+ ++++.. ..+..-|||+.++.+++|++||.|.|+.
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~~~l~dgDevai~P 75 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDDALLNEGDEVAFIP 75 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCCcCcCCCCEEEEeC
Confidence 46778866 8888876555 333322 3456789999999999999999999986
No 50
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.
Probab=89.54 E-value=0.36 Score=43.57 Aligned_cols=52 Identities=19% Similarity=0.344 Sum_probs=39.9
Q ss_pred ceEecCCCCcHhHHHhhcccccccceEEEEE-----------------CCE--ecCCCccCCCCCeEEEEe
Q 003428 573 EIKNLPKGATVVDYAYMIHTEIGNKMVAAKV-----------------NGN--LVSPTHVLANAEVVEIIT 624 (820)
Q Consensus 573 ~i~~lP~GaT~lDfAy~Iht~lg~~~~~akV-----------------NG~--~v~l~~~L~~gd~VeIlT 624 (820)
+..++++|+|+.+.|-.||+++-+..+.|.| .|+ ...-+|.+++||+|.+..
T Consensus 13 RaWti~~G~~Ap~aAG~IHsDfekgFI~Aevi~~~d~~~~~s~~~~k~~Gk~r~eGK~YivqDGDIi~f~f 83 (84)
T PF06071_consen 13 RAWTIRKGTTAPQAAGVIHSDFEKGFIRAEVISYDDFVEYGSEAAAKEAGKLRLEGKDYIVQDGDIIHFRF 83 (84)
T ss_dssp EEEEEETT-BHHHHHHCC-THHHHHEEEEEEEEHHHHHHHTSHHHHHHTT-SEEEETT-B--TTEEEEEEE
T ss_pred EEEEccCCCCHHHhHhHHHHHHHhhceEEEEEcHHHHHHcCCHHHHHHcCCccccCCceeEeCCCEEEEEc
Confidence 4568999999999999999999999999998 355 566788999999998854
No 51
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.56 E-value=0.8 Score=42.14 Aligned_cols=52 Identities=23% Similarity=0.201 Sum_probs=39.7
Q ss_pred eEecCCCCcHhHHHhh-----cccccccceEEEEECCEecCCCccCCCCCeEEEEec
Q 003428 574 IKNLPKGATVVDYAYM-----IHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (820)
Q Consensus 574 i~~lP~GaT~lDfAy~-----Iht~lg~~~~~akVNG~~v~l~~~L~~gd~VeIlT~ 625 (820)
-+.++.|+|+.|..-+ +-++++-+.--.=|=|+.+-++.+|+.||.|||.-.
T Consensus 20 ~v~v~egatV~dAi~~Sgll~~~~~idl~~n~~GI~~k~~kl~~~l~dgDRVEIyRP 76 (99)
T COG2914 20 RVQLQEGATVEDAILASGLLELFPDIDLHENKVGIYSKPVKLDDELHDGDRVEIYRP 76 (99)
T ss_pred EEEeccCcCHHHHHHhcchhhccccCCccccceeEEccccCccccccCCCEEEEecc
Confidence 5789999999998654 556665543233345789999999999999999764
No 52
>PLN02837 threonine-tRNA ligase
Probab=86.96 E-value=0.98 Score=54.69 Aligned_cols=68 Identities=13% Similarity=0.067 Sum_probs=56.4
Q ss_pred CCCeEEEEeccCCCCCCcCCCChhHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC---cccccccc
Q 003428 616 NAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITADTVGDFVADSGEES---EVEDLSDG 692 (820)
Q Consensus 616 ~gd~VeIlT~~~~~~~~~~~p~~~WL~~v~T~~Ar~~ir~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~fy~~ 692 (820)
....|+++|.++. +++..++| +++|++..|+.+.|++.++.+ .+++||+|
T Consensus 28 ~~~~~~~~~~~~~-------------------~~~~~~~H--------Sa~HLL~~Av~~l~~~~~~~ig~~~~~g~y~D 80 (614)
T PLN02837 28 EPERVVLPTNESS-------------------EKLLKIRH--------TCAHVMAMAVQKLFPDAKVTIGPWIENGFYYD 80 (614)
T ss_pred CCceEEEEeccCh-------------------hhHHHHHH--------HHHHHHHHHHHHHcCCcEEEECCccCCCEEEE
Confidence 3467999997643 78999999 999999999999998765544 56999999
Q ss_pred ccC---CchhHHHHHHHHhhc
Q 003428 693 SKQ---DKPLWEKILMNVVQM 710 (820)
Q Consensus 693 i~~---~~~~~~~i~~~~~~~ 710 (820)
++. ++.++.+|++.|.+.
T Consensus 81 ~~~~~lt~edl~~IEk~m~~i 101 (614)
T PLN02837 81 FDMEPLTDKDLKRIKKEMDRI 101 (614)
T ss_pred ecCCCCCHHHHHHHHHHHHHH
Confidence 964 567899999999877
No 53
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=83.14 E-value=1.4 Score=39.73 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=41.1
Q ss_pred ceEecCCCCcHhHHHhhcccccccceEEEEE-----------------CCE--ecCCCccCCCCCeEEEE
Q 003428 573 EIKNLPKGATVVDYAYMIHTEIGNKMVAAKV-----------------NGN--LVSPTHVLANAEVVEII 623 (820)
Q Consensus 573 ~i~~lP~GaT~lDfAy~Iht~lg~~~~~akV-----------------NG~--~v~l~~~L~~gd~VeIl 623 (820)
+..+++.|+|+-+.|-.||+++-...+.|.| .|+ +-.-+|.+++||++.+.
T Consensus 13 RAWti~~g~tAp~AAG~IHsDfekgFIrAeVi~~~d~i~~g~~~~ak~~Gkir~eGK~Yiv~DGDi~~f~ 82 (83)
T cd04867 13 RAWTIRKGTKAPQAAGVIHTDFEKGFIRAEVMKYEDLVELGSEAAAKEAGKYRQEGKDYVVQDGDIIFFK 82 (83)
T ss_pred EEEEccCCCChHHhcCCcccccccCcEEEEEEcHHHHHHcCCHHHHHHcChhhhhCCceEeeCCeEEEEE
Confidence 4678999999999999999999999999988 232 22336678999998763
No 54
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=81.62 E-value=3 Score=37.20 Aligned_cols=50 Identities=26% Similarity=0.169 Sum_probs=37.7
Q ss_pred eEecCCCCcHhHHHhhc---cccccc----------ceEEEEECCEecCCCc--cCCCCCeEEEEe
Q 003428 574 IKNLPKGATVVDYAYMI---HTEIGN----------KMVAAKVNGNLVSPTH--VLANAEVVEIIT 624 (820)
Q Consensus 574 i~~lP~GaT~lDfAy~I---ht~lg~----------~~~~akVNG~~v~l~~--~L~~gd~VeIlT 624 (820)
.+++| |+|+.|+--.+ |+++.. ..+..-|||+.++.+. +|++||.|.|+.
T Consensus 19 ~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~~~l~dgdev~i~P 83 (88)
T TIGR01687 19 EIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLGTELKDGDVVAIFP 83 (88)
T ss_pred EEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCCCCCCCCCEEEEeC
Confidence 45667 89999987666 443221 1257789999998887 999999999986
No 55
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=80.62 E-value=6.6 Score=44.27 Aligned_cols=58 Identities=24% Similarity=0.231 Sum_probs=35.7
Q ss_pred ccchHHHHHHHHH----HcCCCHHH-HHHHhhccccccCCC------CCHHHHHH-HhChHHHHHHhhhc
Q 003428 171 FIIHPVEVARILG----ELELDWES-IAAGLLHDTVEDTNV------VTFERIEE-EFGATVRRIVEGET 228 (820)
Q Consensus 171 Yi~Hpl~VA~ILa----elglD~~t-IiAALLHDvVEDT~~------~T~eeI~~-~FG~~Va~LV~glT 228 (820)
.+.|.++|+.+.. .++.|.+. ++||||||+-..... ...+-+++ .|.+.++.+|+.-.
T Consensus 188 l~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~k~~~~~H~~~Ga~iL~e~G~~e~i~~iIe~H~ 257 (339)
T PRK12703 188 LIRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRTKTNGIDHAVAGAEILRKENIDDRVVSIVERHI 257 (339)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 4689999987643 46778765 577999999643210 01222332 25567888886543
No 56
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=79.28 E-value=2.1 Score=35.11 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.0
Q ss_pred EEEEEEecccchHHHHHHHhhc
Q 003428 798 WFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 798 ~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
.|.|.+.||.|+|++|+++|+.
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~ 23 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILAD 23 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4788999999999999999975
No 57
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=78.28 E-value=1.2 Score=39.99 Aligned_cols=37 Identities=24% Similarity=0.168 Sum_probs=28.1
Q ss_pred CCcccchHHHHHHHHHHcC------CCHHHHHHHhhccccccC
Q 003428 168 GEPFIIHPVEVARILGELE------LDWESIAAGLLHDTVEDT 204 (820)
Q Consensus 168 GePYi~Hpl~VA~ILaelg------lD~~tIiAALLHDvVEDT 204 (820)
+++.+.|.+.|+.+...+. ......+||||||+-...
T Consensus 2 ~~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~ 44 (124)
T smart00471 2 DYHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPG 44 (124)
T ss_pred CchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCcc
Confidence 5677899999998886543 234678999999997644
No 58
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=73.38 E-value=8.6 Score=34.03 Aligned_cols=46 Identities=24% Similarity=0.234 Sum_probs=31.9
Q ss_pred CCCcHhHHHhhc---ccc----cccceEEEEECCEecCCCccCCCCCeEEEEe
Q 003428 579 KGATVVDYAYMI---HTE----IGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (820)
Q Consensus 579 ~GaT~lDfAy~I---ht~----lg~~~~~akVNG~~v~l~~~L~~gd~VeIlT 624 (820)
.|+|+.|+--.+ |+. +...-+..-||++.++.+++|++||.|-|+.
T Consensus 24 ~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~~~~l~dgDeVai~P 76 (81)
T PRK11130 24 DFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFP 76 (81)
T ss_pred CCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCCCCCCCCCCEEEEeC
Confidence 367777764443 221 1122234678999999999999999999985
No 59
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.98 E-value=3.3 Score=36.37 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=20.0
Q ss_pred EEEEEEecccchHHHHHHHhhc
Q 003428 798 WFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 798 ~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
-|+|.+-||.|+|.+|+++|..
T Consensus 3 viev~a~DRpGLL~~i~~~l~~ 24 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTD 24 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 60
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=71.86 E-value=1.6 Score=39.62 Aligned_cols=33 Identities=33% Similarity=0.318 Sum_probs=23.6
Q ss_pred cchHHHHHHHHHHc----C--CCHH-HHHHHhhccccccC
Q 003428 172 IIHPVEVARILGEL----E--LDWE-SIAAGLLHDTVEDT 204 (820)
Q Consensus 172 i~Hpl~VA~ILael----g--lD~~-tIiAALLHDvVEDT 204 (820)
+.|.+.|+.+...+ + .+.+ .++||||||+-.-.
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~~ 41 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKIP 41 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHHS
T ss_pred hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCCC
Confidence 57999999887654 3 2333 57999999986543
No 61
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.87 E-value=4.6 Score=35.81 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.8
Q ss_pred EEEEEEecccchHHHHHHHhhc
Q 003428 798 WFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 798 ~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
-++|.|-||.|||.+|+.+|..
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~ 24 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTD 24 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHh
Confidence 5889999999999999999863
No 62
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=69.19 E-value=4.5 Score=42.88 Aligned_cols=38 Identities=29% Similarity=0.335 Sum_probs=30.3
Q ss_pred cCCcccchHHHHHHHHH----HcCCCHHH-HHHHhhccccccC
Q 003428 167 SGEPFIIHPVEVARILG----ELELDWES-IAAGLLHDTVEDT 204 (820)
Q Consensus 167 sGePYi~Hpl~VA~ILa----elglD~~t-IiAALLHDvVEDT 204 (820)
+|..-+.|.++||.+.. +.|.|.+. ..||||||+.--.
T Consensus 33 ~~~~~l~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~~~ 75 (222)
T COG1418 33 YGQHVLEHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGKAI 75 (222)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcccc
Confidence 67777999999987753 56889876 6899999987543
No 63
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=68.82 E-value=4.6 Score=40.85 Aligned_cols=41 Identities=34% Similarity=0.468 Sum_probs=32.1
Q ss_pred hhcCCccccCCcc--cchHHHHHHHHHHcCCCHHHHHHHhhccc
Q 003428 159 AHDGQKRRSGEPF--IIHPVEVARILGELELDWESIAAGLLHDT 200 (820)
Q Consensus 159 aH~gQ~RksGePY--i~Hpl~VA~ILaelglD~~tIiAALLHDv 200 (820)
.|..+- .+|+|. ..|.++.|...-.-|.|.+.|+||||||+
T Consensus 18 ~~g~e~-y~ge~VTq~eHaLQ~AtlAerdGa~~~lVaaALLHDi 60 (186)
T COG4341 18 RHGDEG-YSGEPVTQLEHALQCATLAERDGADTALVAAALLHDI 60 (186)
T ss_pred Hccccc-cccCcchhhhhHHHHhHHHHhcCCcHHHHHHHHHHhH
Confidence 444443 378885 37999999876678999999999999986
No 64
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=67.32 E-value=5.5 Score=34.69 Aligned_cols=22 Identities=32% Similarity=0.302 Sum_probs=17.9
Q ss_pred EEEEEEecccchHHHHHHHhhc
Q 003428 798 WFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 798 ~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
-|.|.|-||.|++++||++|+.
T Consensus 4 vItv~G~DrpGiv~~v~~~l~~ 25 (76)
T PF13740_consen 4 VITVVGPDRPGIVAAVTGVLAE 25 (76)
T ss_dssp EEEEEEE--TTHHHHHHHHHHC
T ss_pred EEEEEecCCCcHHHHHHHHHHH
Confidence 4789999999999999999975
No 65
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=64.09 E-value=5.8 Score=41.16 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=21.7
Q ss_pred EEEEEEecccchHHHHHHHhhcC
Q 003428 798 WFSVVCIDRRGNFHSVEIVMQSR 820 (820)
Q Consensus 798 ~i~V~~~DR~Gll~dvt~vi~~~ 820 (820)
++.|.|.||.||+++||++++++
T Consensus 97 ~v~v~G~DrPGIV~~vT~~la~~ 119 (190)
T PRK11589 97 WVQVEVADSPHLIERFTALFDSH 119 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHc
Confidence 89999999999999999999875
No 66
>PRK09169 hypothetical protein; Validated
Probab=64.07 E-value=70 Score=44.11 Aligned_cols=110 Identities=17% Similarity=0.174 Sum_probs=76.7
Q ss_pred EEEEEecChHHHHHHHH----hcCCCC----CccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhh-ccccccccc
Q 003428 372 EIRSVCKEPYSIYKAVL----KSRGSI----NEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVH-GIWTPIPRA 442 (820)
Q Consensus 372 ~V~~R~K~~ySI~~Km~----rk~~~~----~eI~Di~giRIIv~~~~c~~~~~~~~~~~dCY~vlg~Ih-~~~~pip~r 442 (820)
....|+|+.-|+.+|+. +++.++ ..|.|.+=.=|++++. .+...+..+++.+. .-|.-+ +
T Consensus 1915 Gle~RlKS~~SL~rKL~~~~~~~~~s~e~Aaa~VnDALRYtvvLp~~---------~Fva~~r~iv~~L~~~G~~~V--k 1983 (2316)
T PRK09169 1915 GLAHRLKSEGSLFEKLRGLMAKKHLTPEEAAALVNDALRYSVVLPPQ---------TFVAGYRRILGALDEQGHTRT--R 1983 (2316)
T ss_pred chHhhhCCHHHHHHHHHHHHhccCCCHHHHHHhccceeeEEEecCCc---------cHHHHHHHHHHHHHhCCCeEE--E
Confidence 34569999999999986 455554 5778866555555543 47788888988886 346544 5
Q ss_pred ccccccCCCCCCcceeEEEE-eccCCCCceeEEEEEechHHHHHHHHHHHhhccCccc
Q 003428 443 MKDYIATPKPNGYQSLHTTL-IPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVF 499 (820)
Q Consensus 443 ~kDyIa~PK~NGYqSLHttV-~~~~~~~~~~vEVQIRT~~Mh~~AE~G~aahwkyK~~ 499 (820)
++++-..+ .++|..+|+++ .. .++..+|||-=|..--..-+. .|--||..
T Consensus 1984 v~N~F~~~-~~~YkGVNv~l~~s---~~g~~fEIQFHT~qSF~lK~r---~H~lYkq~ 2034 (2316)
T PRK09169 1984 VTNHFKKR-GPAFKGINVTLDAT---GEGVRLEIQFHTPQTFDLKER---FHDLYKQA 2034 (2316)
T ss_pred EEeeeccC-CCCccceEEeeecC---CCCceEEEEecCHHHHHHHHH---hHHHHHHH
Confidence 55543322 49999999988 33 345799999999876665553 57778763
No 67
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.69 E-value=6.2 Score=32.99 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.4
Q ss_pred EEEEEecccchHHHHHHHhhc
Q 003428 799 FSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 799 i~V~~~DR~Gll~dvt~vi~~ 819 (820)
|.|.+.|+.|+|++|+++|++
T Consensus 3 l~v~~~d~~gll~~i~~~l~~ 23 (70)
T cd04899 3 LELTALDRPGLLADVTRVLAE 23 (70)
T ss_pred EEEEEcCCccHHHHHHHHHHH
Confidence 789999999999999999975
No 68
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=63.63 E-value=7.9 Score=32.14 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=20.3
Q ss_pred EEEECCEec-CCCccCCCCCeEEE
Q 003428 600 AAKVNGNLV-SPTHVLANAEVVEI 622 (820)
Q Consensus 600 ~akVNG~~v-~l~~~L~~gd~VeI 622 (820)
...|||+.+ ..++.|+.||.|+|
T Consensus 35 ~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 35 EVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred CEEECCEEccCCCCCCCCCCEEEe
Confidence 567999998 77999999999986
No 69
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.25 E-value=7.3 Score=33.50 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=20.1
Q ss_pred EEEEEEecccchHHHHHHHhhc
Q 003428 798 WFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 798 ~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
.|.|.+-||.||+++||.+|++
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~ 24 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQ 24 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHH
Confidence 5789999999999999999975
No 70
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=62.15 E-value=4.4 Score=36.88 Aligned_cols=35 Identities=26% Similarity=0.122 Sum_probs=25.5
Q ss_pred cccchHHHHHHHHHHcCC--------CHHHHHHHhhccccccC
Q 003428 170 PFIIHPVEVARILGELEL--------DWESIAAGLLHDTVEDT 204 (820)
Q Consensus 170 PYi~Hpl~VA~ILaelgl--------D~~tIiAALLHDvVEDT 204 (820)
+...|.+.|+.+...+.. .....+||||||+-+..
T Consensus 2 ~~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~ 44 (145)
T cd00077 2 HRFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPG 44 (145)
T ss_pred chHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCcc
Confidence 456899999888765421 24568999999998753
No 71
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=61.28 E-value=8.9 Score=39.17 Aligned_cols=27 Identities=19% Similarity=0.355 Sum_probs=23.6
Q ss_pred Cceee-EEEEEEecccchHHHHHHHhhc
Q 003428 793 GHSIQ-WFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 793 ~~sf~-~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
.+... |++|++.||.||++++|+.+..
T Consensus 88 a~~~~v~v~v~a~DrpgIv~~~T~lf~~ 115 (176)
T COG2716 88 ANPAPVWVYVDANDRPGIVEEFTALFDG 115 (176)
T ss_pred CCCceEEEEEEecCCccHHHHHHHHHHh
Confidence 44577 9999999999999999999864
No 72
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=60.91 E-value=18 Score=40.45 Aligned_cols=75 Identities=23% Similarity=0.279 Sum_probs=45.2
Q ss_pred CCChHHHHHhHhhhhcCCChhhHHHHHHHHH------H----HHHhhcCCccccCCcccchHHHHHHHHHHc-----CCC
Q 003428 124 EDSPERLWEDLRPTISYLSPNELELVRRALM------L----AFEAHDGQKRRSGEPFIIHPVEVARILGEL-----ELD 188 (820)
Q Consensus 124 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~A~~------~----A~~aH~gQ~RksGePYi~Hpl~VA~ILael-----glD 188 (820)
..+++.+++.|...+..........+-+++- | |...|.... .+| .+.|-+.|+.+...+ .+|
T Consensus 106 ~~~~e~l~~el~~~i~~i~~~~l~~l~~~~~~~~~~~f~~~PAa~~~HHay-~GG--LleHtl~v~~~~~~l~~~y~~~n 182 (314)
T PRK13480 106 PLSKEEMQEEITQYIFEMENPNIQRITRHLLKKYQEEFLDYPAATKNHHEF-VSG--LAYHVVSMLRLAKSICDLYPSLN 182 (314)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCChHhhccccc-ccH--HHHHHHHHHHHHHHHHHhccccC
Confidence 3467889999988775555555444433321 1 011111111 133 368999999987654 467
Q ss_pred HH-HHHHHhhcccc
Q 003428 189 WE-SIAAGLLHDTV 201 (820)
Q Consensus 189 ~~-tIiAALLHDvV 201 (820)
.+ .+++|||||+=
T Consensus 183 ~dll~agalLHDiG 196 (314)
T PRK13480 183 KDLLYAGIILHDLG 196 (314)
T ss_pred HHHHHHHHHHHHhh
Confidence 77 47889999974
No 73
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=60.31 E-value=1.9 Score=48.84 Aligned_cols=57 Identities=25% Similarity=0.326 Sum_probs=43.1
Q ss_pred CCeeeec-CCC------------ceEecCCCCcHhHHHhhcccccccceEEEEECCEe--cCCCccCCCCCeEEE
Q 003428 563 SRVFVFT-PRG------------EIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNL--VSPTHVLANAEVVEI 622 (820)
Q Consensus 563 ~~I~Vft-P~G------------~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~--v~l~~~L~~gd~VeI 622 (820)
++|.++| .+| |....+.|||++||+|.||++ ...+||-.|+. ..-+|.|++||++..
T Consensus 297 ~evrawti~~g~kap~aaG~Ih~Dfe~~fi~aevi~~~d~i~~~---~~~~Akeag~~r~~GkdY~vqdGDVi~F 368 (372)
T COG0012 297 KEVRAWTIKDGSKAPDAAGVIHPDFEKGFIRAEVISYADLIHYG---GEAAAKEAGKRRLEGKDYIVQDGDVIHF 368 (372)
T ss_pred CeEEEEEeccCCcccccCCccccchhhccccceEeeHHHHHhcC---cHHHHHHhcceeeccccceecCCCEEEE
Confidence 6777777 223 577789999999999999998 33344444444 788999999999943
No 74
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=59.75 E-value=3.8 Score=44.54 Aligned_cols=60 Identities=32% Similarity=0.459 Sum_probs=45.9
Q ss_pred eeeec-CCCc------eEecCC-CCcHhHHHhhcccccccceEEEE-------ECCEecCCCccCCCCCeEEEEe
Q 003428 565 VFVFT-PRGE------IKNLPK-GATVVDYAYMIHTEIGNKMVAAK-------VNGNLVSPTHVLANAEVVEIIT 624 (820)
Q Consensus 565 I~Vft-P~G~------i~~lP~-GaT~lDfAy~Iht~lg~~~~~ak-------VNG~~v~l~~~L~~gd~VeIlT 624 (820)
+.+|| |+|. ...|+. -.|+-||--.||..+-....-|. -|.+.|.++|.|.+.|+|.|+.
T Consensus 283 vriYtkPKgq~PDy~~pVvLs~~~~sv~dfc~~ih~~~~~~fk~alvwg~s~kh~pq~vg~~h~l~dedvv~ivk 357 (358)
T KOG1487|consen 283 VRIYTKPKGQPPDYTSPVVLSSERRSVEDFCNKIHKSILKQFKYALVWGSSVKHNPQRVGKEHVLEDEDVVQIVK 357 (358)
T ss_pred eEEecCCCCCCCCCCCCceecCCcccHHHHHHHHHHHHHHhhhhheEeccccCcChhhcchhheeccchhhhhcc
Confidence 44666 6774 334444 46899999999999977755444 4778899999999999999974
No 75
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=59.19 E-value=9.9 Score=45.60 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=46.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC---ccccccccccC----CchhHHHHHHHHhhc
Q 003428 646 TRSARHKIMKFLREQAALSASEITADTVGDFVADSGEES---EVEDLSDGSKQ----DKPLWEKILMNVVQM 710 (820)
Q Consensus 646 T~~Ar~~ir~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~fy~~i~~----~~~~~~~i~~~~~~~ 710 (820)
+..|+..++| +++|+...|+.+.|++.++.. .+++||++++. ++.++.+|++.|.+.
T Consensus 2 ~~~g~~~~~h--------S~~hlL~~A~~~~~~~~~~~~~~~~~~g~~~d~~~~~~it~e~l~~Ie~~m~~l 65 (575)
T PRK12305 2 SPDGLEVIRH--------SAAHVLAQAVQELFPDAKLGIGPPIEDGFYYDFDVPEPFTPEDLKKIEKKMKKI 65 (575)
T ss_pred CHHHHHHHHH--------HHHHHHHHHHHHHcCCceEEeCCCcCCeEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 3468888899 999999999999998765443 56999999865 456799999999876
No 76
>smart00363 S4 S4 RNA-binding domain.
Probab=58.98 E-value=9.1 Score=30.03 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=21.2
Q ss_pred EEEECCEec-CCCccCCCCCeEEEE
Q 003428 600 AAKVNGNLV-SPTHVLANAEVVEII 623 (820)
Q Consensus 600 ~akVNG~~v-~l~~~L~~gd~VeIl 623 (820)
+.+|||+.+ ..+++|..||.|++-
T Consensus 27 ~i~vng~~~~~~~~~l~~gd~i~~~ 51 (60)
T smart00363 27 RVKVNGKKVTKPSYIVKPGDVISVR 51 (60)
T ss_pred CEEECCEEecCCCeEeCCCCEEEEc
Confidence 578999999 899999999998874
No 77
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=57.94 E-value=10 Score=41.16 Aligned_cols=52 Identities=33% Similarity=0.399 Sum_probs=46.0
Q ss_pred ceEecCCCCcHhHHHhhcccccccceEEEEECC-------EecCCCccCCCCCeEEEEe
Q 003428 573 EIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNG-------NLVSPTHVLANAEVVEIIT 624 (820)
Q Consensus 573 ~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG-------~~v~l~~~L~~gd~VeIlT 624 (820)
+.+-|..|+|+-|+--+||..+.....-|.|=| +.|.|.+.+.+.|+|.|+.
T Consensus 305 d~~vlr~g~tve~~C~~iHr~l~~qfkyAlVWGtSakhsPQrvgl~h~~~dEdvvqi~~ 363 (364)
T KOG1486|consen 305 DPLVLRKGSTVEDVCHRIHRTLAAQFKYALVWGTSAKHSPQRVGLGHTLEDEDVVQIVK 363 (364)
T ss_pred CceEEeCCCcHHHHHHHHHHHHHHhhceeeEeccccccCcceeccccccccccceeeec
Confidence 678888999999999999999999988777755 5789999999999999974
No 78
>PRK14707 hypothetical protein; Provisional
Probab=56.25 E-value=31 Score=46.91 Aligned_cols=103 Identities=14% Similarity=0.119 Sum_probs=72.9
Q ss_pred cChHHHHHHHHhc---CCC----CCccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhh-cccccccccccccccC
Q 003428 378 KEPYSIYKAVLKS---RGS----INEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVH-GIWTPIPRAMKDYIAT 449 (820)
Q Consensus 378 K~~ySI~~Km~rk---~~~----~~eI~Di~giRIIv~~~~c~~~~~~~~~~~dCY~vlg~Ih-~~~~pip~r~kDyIa~ 449 (820)
|++.||.+|+.+. +.+ +..|.|.+-.=||+++ +.+......+...+. .-|+.+ ++|++-..
T Consensus 2544 Ks~~Si~RKI~~~~~~~ls~eqAaarVrDalRYtviLp~---------e~Fv~~v~~~~~~L~~~G~~~~--rvKNtw~~ 2612 (2710)
T PRK14707 2544 KSLASIKDKIRRHLRAGMTAEQATQSVGDALRYALELPS---------EGFVAKVQAAQDALRRQGMTCV--NLQNYFTS 2612 (2710)
T ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHhhhheeEEEEcCc---------chHHHHHHHHHHHHHhcCCeEE--EeeccccC
Confidence 9999999999653 333 4678887666666554 457788888888876 457666 78887754
Q ss_pred CCCCCcceeEEEEeccCCCCceeEEEEEechHHHHHHHHHHHhhccCcc
Q 003428 450 PKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRV 498 (820)
Q Consensus 450 PK~NGYqSLHttV~~~~~~~~~~vEVQIRT~~Mh~~AE~G~aahwkyK~ 498 (820)
| .+.|..+-+++...+ |..||||.=|..=-..-+. .|=.|+.
T Consensus 2613 ~-d~tY~GvN~~~r~~~---g~~FEIQFHT~~Sf~~K~~---tH~lYek 2654 (2710)
T PRK14707 2613 G-DGTYRGINASFTDAE---GYAFEVQFHTAESFNAKAQ---THLSYKR 2654 (2710)
T ss_pred C-CCcccceeeeEEcCC---CCeEEEEeccHHHHHHHHH---hHHHHHh
Confidence 4 477999999986543 3589999999776554443 4555543
No 79
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=55.85 E-value=17 Score=38.87 Aligned_cols=50 Identities=24% Similarity=0.099 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHhhcCCccccCCcccchHHHHHHHHH-----H---cCCCHHH-HHHHhhcccc
Q 003428 145 ELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILG-----E---LELDWES-IAAGLLHDTV 201 (820)
Q Consensus 145 ~~~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa-----e---lglD~~t-IiAALLHDvV 201 (820)
|..++++|.+++.+.... .-+.|.++|..... + ++.|.+. .+||||||+.
T Consensus 37 dt~l~~~a~~~~~~~l~~-------~~~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG 95 (228)
T TIGR03401 37 DTPLVKFAQEYAKARLPP-------ETYNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIG 95 (228)
T ss_pred ChHHHHHHHHHHHhhCCH-------hhhHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhc
Confidence 566678888888776442 33689999865432 1 3677765 5899999986
No 80
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=55.26 E-value=14 Score=33.10 Aligned_cols=29 Identities=28% Similarity=0.256 Sum_probs=26.5
Q ss_pred cceEEEEECCEecCCCccCCCCCeEEEEe
Q 003428 596 NKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (820)
Q Consensus 596 ~~~~~akVNG~~v~l~~~L~~gd~VeIlT 624 (820)
..++.+.+|...++++++|++||+|-|+.
T Consensus 51 ~~~v~~~~~~~~~~~~t~L~dGDeVa~~P 79 (84)
T COG1977 51 NIVVNAANNEFLVGLDTPLKDGDEVAFFP 79 (84)
T ss_pred cceEEeeeceeeccccccCCCCCEEEEeC
Confidence 46788889999999999999999999986
No 81
>PRK07334 threonine dehydratase; Provisional
Probab=54.97 E-value=9.5 Score=43.78 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=24.4
Q ss_pred Cceee-EEEEEEecccchHHHHHHHhhc
Q 003428 793 GHSIQ-WFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 793 ~~sf~-~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
...|+ +|+|.+.||.|+|+||+++|++
T Consensus 322 ~~~y~v~l~I~~~dr~GlL~dI~~~is~ 349 (403)
T PRK07334 322 RAGRLARLRVDIRDRPGALARVTALIGE 349 (403)
T ss_pred hCCCEEEEEEEeCCCCCHHHHHHHHHhh
Confidence 45688 9999999999999999999974
No 82
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=54.45 E-value=13 Score=30.75 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.8
Q ss_pred EEEEEEecccchHHHHHHHhhc
Q 003428 798 WFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 798 ~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
.|.|.|-|+.|+|++|+.+|+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~ 23 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLAD 23 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999999875
No 83
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=54.11 E-value=10 Score=29.91 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=19.1
Q ss_pred EEEECCEecC-CCccCCCCCeE
Q 003428 600 AAKVNGNLVS-PTHVLANAEVV 620 (820)
Q Consensus 600 ~akVNG~~v~-l~~~L~~gd~V 620 (820)
+.+|||+.+. .+++++.||+|
T Consensus 27 ~V~VNg~~v~~~~~~v~~~d~I 48 (48)
T PF01479_consen 27 RVKVNGKVVKDPSYIVKPGDVI 48 (48)
T ss_dssp TEEETTEEESSTTSBESTTEEE
T ss_pred EEEECCEEEcCCCCCCCCcCCC
Confidence 5789999999 99999999987
No 84
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=52.57 E-value=15 Score=30.07 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=19.9
Q ss_pred EEEEEEecccchHHHHHHHhhc
Q 003428 798 WFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 798 ~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
+|+|.+.|+.|+|++|+++++.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~ 23 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFAR 23 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHh
Confidence 5889999999999999999864
No 85
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=51.36 E-value=31 Score=31.72 Aligned_cols=46 Identities=20% Similarity=0.124 Sum_probs=32.5
Q ss_pred CCCcHhHHHhhc---cccccc----------ceEEEEECCEec----CCCccCCCCCeEEEEe
Q 003428 579 KGATVVDYAYMI---HTEIGN----------KMVAAKVNGNLV----SPTHVLANAEVVEIIT 624 (820)
Q Consensus 579 ~GaT~lDfAy~I---ht~lg~----------~~~~akVNG~~v----~l~~~L~~gd~VeIlT 624 (820)
.|+|+-|.--.+ |+.... .-+-..|||+.+ .++++|+.||.|.|+.
T Consensus 27 ~~~tV~dll~~L~~~~~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P 89 (94)
T cd01764 27 KPVTVGDLLDYVASNLLEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFIS 89 (94)
T ss_pred CCCcHHHHHHHHHHhCchhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEEC
Confidence 577887764333 322211 246788999987 4779999999999986
No 86
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=51.19 E-value=14 Score=30.69 Aligned_cols=21 Identities=5% Similarity=0.167 Sum_probs=18.7
Q ss_pred EEEEEecccchHHHHHHHhhc
Q 003428 799 FSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 799 i~V~~~DR~Gll~dvt~vi~~ 819 (820)
|.+.+.|+.|+|++|+++|+.
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~ 22 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAE 22 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHH
Confidence 567899999999999999975
No 87
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=50.93 E-value=14 Score=42.27 Aligned_cols=61 Identities=25% Similarity=0.221 Sum_probs=46.5
Q ss_pred CeeeecC--C-CceEecCCCCcHhHHHhhcccccccceEEEEEC-----------------CE--ecCCCccCCCCCeEE
Q 003428 564 RVFVFTP--R-GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVN-----------------GN--LVSPTHVLANAEVVE 621 (820)
Q Consensus 564 ~I~VftP--~-G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVN-----------------G~--~v~l~~~L~~gd~Ve 621 (820)
-++-||- + =+..++++|+|+.+.|-.|||++-...+.|.|= |+ +-.-+|.+++||++.
T Consensus 284 L~sFfT~g~~EvRaWti~~G~~Ap~AAG~IHsDfekgFIrAEV~~yddl~~~gs~~~~k~~Gk~r~eGK~YivqDGDIi~ 363 (368)
T TIGR00092 284 LSFFFTGGKEEVRAWTRKGGWAAPQAAGIIHTDFETGFIAAEVISWDDFIYKKSSQGAKKGGLMRLEGKYYVVDDGDVLF 363 (368)
T ss_pred eeEEEcCCCceeEEeecCCCCchhHhcCCcccccccCceEEEEecHHHHHHcCCHHHHHhcCchhhcCCeEEeeCCeEEE
Confidence 3445553 2 257899999999999999999999999999882 21 233467899999998
Q ss_pred EEe
Q 003428 622 IIT 624 (820)
Q Consensus 622 IlT 624 (820)
+-.
T Consensus 364 f~f 366 (368)
T TIGR00092 364 FAF 366 (368)
T ss_pred Eec
Confidence 753
No 88
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.31 E-value=18 Score=31.13 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.9
Q ss_pred EEEEEEecccchHHHHHHHhhc
Q 003428 798 WFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 798 ~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
.|.|.+-||.|+|++|+.+|++
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~ 24 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRE 24 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHH
Confidence 5788999999999999999975
No 89
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=47.15 E-value=20 Score=30.20 Aligned_cols=33 Identities=39% Similarity=0.534 Sum_probs=23.2
Q ss_pred cccchHHHHHHHHH----HcCCCHH-HHHHHhhccccc
Q 003428 170 PFIIHPVEVARILG----ELELDWE-SIAAGLLHDTVE 202 (820)
Q Consensus 170 PYi~Hpl~VA~ILa----elglD~~-tIiAALLHDvVE 202 (820)
+-..|.+.|+.... .+++|.+ ...||||||+-.
T Consensus 4 ~~~~H~~~v~~~a~~la~~~~~~~~~l~~AalLHDiG~ 41 (80)
T TIGR00277 4 NVLQHSLEVAKLAEALARELGLDVELARRGALLHDIGK 41 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHccCC
Confidence 34578888877654 3577765 578999999743
No 90
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=46.32 E-value=24 Score=36.03 Aligned_cols=58 Identities=28% Similarity=0.346 Sum_probs=36.5
Q ss_pred CcccchHHHHHHHH---H-HcCCCHHH-HHHHhhcccccc-C-------CCCCHHHHHHH-hChHHHHHHhh
Q 003428 169 EPFIIHPVEVARIL---G-ELELDWES-IAAGLLHDTVED-T-------NVVTFERIEEE-FGATVRRIVEG 226 (820)
Q Consensus 169 ePYi~Hpl~VA~IL---a-elglD~~t-IiAALLHDvVED-T-------~~~T~eeI~~~-FG~~Va~LV~g 226 (820)
+..+-|+++|+..+ + ++|-|++. -.+|||||.=-+ | +..+.+-+++. -.++|++.|.+
T Consensus 46 e~L~kHcla~eavMr~lARe~gEDEEkw~~~GlLHD~DYe~tqgdpEeHgl~g~eiL~~edv~eeil~ai~~ 117 (212)
T COG2316 46 ESLQKHCLAVEAVMRWLAREWGEDEEKWAVTGLLHDFDYELTQGDPEEHGLWGVEILREEDVSEEILDAIMG 117 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhhhccHHhhcCChhhcCccceehHhhcCCCHHHHHHHHH
Confidence 45678998776554 4 78999886 678999996211 1 11223333332 66777777765
No 91
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=46.00 E-value=31 Score=36.72 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=40.4
Q ss_pred ecCCCceEecCCCCcHhHHHhhcccccccceE-------------EEEECCEe--c-CCCccCCCCCeEEE
Q 003428 568 FTPRGEIKNLPKGATVVDYAYMIHTEIGNKMV-------------AAKVNGNL--V-SPTHVLANAEVVEI 622 (820)
Q Consensus 568 ftP~G~i~~lP~GaT~lDfAy~Iht~lg~~~~-------------~akVNG~~--v-~l~~~L~~gd~VeI 622 (820)
++-||..++.|+|.|.||.|.+.+-.+-.-|. -++|||+. + .=.+++++|..|+-
T Consensus 6 i~idg~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~g~~~~~~aC~t~v~~Gm~v~t 76 (234)
T PRK07569 6 LTIDDQLVSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEIEGSNKLLPACVTPVAEGMVVQT 76 (234)
T ss_pred EEECCEEEEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEECCCCccccCcCCCCCCCCEEEE
Confidence 34599999999999999999887655533322 46889853 2 55678898887764
No 92
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=45.83 E-value=16 Score=32.60 Aligned_cols=55 Identities=22% Similarity=0.297 Sum_probs=34.7
Q ss_pred eecCCCceEecCCCCcHhHHHhhcccccccc------------------eEEEEECCEe-cC-CCccCCCCCeEEE
Q 003428 567 VFTPRGEIKNLPKGATVVDYAYMIHTEIGNK------------------MVAAKVNGNL-VS-PTHVLANAEVVEI 622 (820)
Q Consensus 567 VftP~G~i~~lP~GaT~lDfAy~Iht~lg~~------------------~~~akVNG~~-v~-l~~~L~~gd~VeI 622 (820)
-|+=||+.++.++|.|.++++.+.+..+=.. | -+.|||+. +. =.+++++|..|+-
T Consensus 5 ~i~idG~~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C-~Vev~g~~~v~AC~t~v~~GM~V~T 79 (82)
T PF13510_consen 5 TITIDGKPVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLC-LVEVDGEPNVRACSTPVEDGMVVET 79 (82)
T ss_dssp EEEETTEEEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS--EEEESSEEEEETTT-B--TTEEEE-
T ss_pred EEEECCEEEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceE-EEEECCCcceEcccCCCcCCcEEEE
Confidence 3556899999999999999998864443211 3 48899987 42 3447899988763
No 93
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=45.44 E-value=23 Score=28.62 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.2
Q ss_pred EEEECCEec-CCCccCCCCCeEEEE
Q 003428 600 AAKVNGNLV-SPTHVLANAEVVEII 623 (820)
Q Consensus 600 ~akVNG~~v-~l~~~L~~gd~VeIl 623 (820)
+.+|||+.+ ...+++..||+|.+.
T Consensus 27 ~V~vn~~~~~~~~~~v~~~d~i~i~ 51 (70)
T cd00165 27 HVLVNGKVVTKPSYKVKPGDVIEVD 51 (70)
T ss_pred CEEECCEEccCCccCcCCCCEEEEc
Confidence 678999999 889999999998875
No 94
>PRK00106 hypothetical protein; Provisional
Probab=44.38 E-value=19 Score=43.02 Aligned_cols=36 Identities=33% Similarity=0.464 Sum_probs=28.0
Q ss_pred cCCcccchHHHHHHHH---H-HcCCCH-HHHHHHhhccccc
Q 003428 167 SGEPFIIHPVEVARIL---G-ELELDW-ESIAAGLLHDTVE 202 (820)
Q Consensus 167 sGePYi~Hpl~VA~IL---a-elglD~-~tIiAALLHDvVE 202 (820)
.|.+.+.|.++||.+. + .+|+|. ..-.||||||+=.
T Consensus 347 y~qnl~~HSv~VA~lA~~lA~~lgld~e~a~~AGLLHDIGK 387 (535)
T PRK00106 347 YGQNVLRHSVEVGKLAGILAGELGENVALARRAGFLHDMGK 387 (535)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccC
Confidence 3667789999998875 3 678885 4579999999743
No 95
>PRK05007 PII uridylyl-transferase; Provisional
Probab=44.08 E-value=21 Score=45.43 Aligned_cols=36 Identities=8% Similarity=0.236 Sum_probs=31.6
Q ss_pred CceecccCCCceeeEEEEEEecccchHHHHHHHhhc
Q 003428 784 KIATWHNLEGHSIQWFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 784 ~~a~W~~~~~~sf~~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
..+.|++.....|.-|+|.+-||.|||++|++++..
T Consensus 796 ~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~ 831 (884)
T PRK05007 796 TEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFAD 831 (884)
T ss_pred CEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHH
Confidence 358899887777889999999999999999999863
No 96
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=43.42 E-value=19 Score=35.76 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=24.1
Q ss_pred ccchHHHHHHHHH----HcCCCHH-HHHHHhhccccc
Q 003428 171 FIIHPVEVARILG----ELELDWE-SIAAGLLHDTVE 202 (820)
Q Consensus 171 Yi~Hpl~VA~ILa----elglD~~-tIiAALLHDvVE 202 (820)
-+.|.+.||.+.. .++.|++ .-+||||||+=.
T Consensus 9 r~~Hsl~Va~~a~~lA~~~~~d~e~a~~AGLLHDIGk 45 (158)
T TIGR00488 9 RYQHCLGVGQTAKQLAEANKLDSKKAEIAGAYHDLAK 45 (158)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhc
Confidence 3689999987753 4577654 578999999865
No 97
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=43.38 E-value=72 Score=26.72 Aligned_cols=61 Identities=15% Similarity=0.214 Sum_probs=44.2
Q ss_pred CeeeecCCCc--eEecCCCCcHhHHHhhcccccccc--eEEEEECCEecCCCcc-----CCCCCeEEEEe
Q 003428 564 RVFVFTPRGE--IKNLPKGATVVDYAYMIHTEIGNK--MVAAKVNGNLVSPTHV-----LANAEVVEIIT 624 (820)
Q Consensus 564 ~I~VftP~G~--i~~lP~GaT~lDfAy~Iht~lg~~--~~~akVNG~~v~l~~~-----L~~gd~VeIlT 624 (820)
.|+|-+++|+ .++++...|+.|+-..|+...|-. -..-..+|++..-+.+ +++|++|.++.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 2 EIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 4789999987 456778999999988887765532 2344558887775554 68888887763
No 98
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=41.78 E-value=23 Score=36.81 Aligned_cols=35 Identities=34% Similarity=0.343 Sum_probs=27.3
Q ss_pred ccchHHHHHHHHHH----cCCCHH-HHHHHhhccccccCC
Q 003428 171 FIIHPVEVARILGE----LELDWE-SIAAGLLHDTVEDTN 205 (820)
Q Consensus 171 Yi~Hpl~VA~ILae----lglD~~-tIiAALLHDvVEDT~ 205 (820)
-+.|.++||....+ +++|.+ +=+||+|||.--+-+
T Consensus 18 R~~H~l~V~~~A~~LA~~y~~d~~kA~~AgilHD~aK~~p 57 (187)
T COG1713 18 RFEHCLGVAETAIELAEAYGLDPEKAYLAGILHDIAKELP 57 (187)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCC
Confidence 37999999887643 588865 579999999986654
No 99
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=41.43 E-value=50 Score=27.94 Aligned_cols=50 Identities=12% Similarity=0.050 Sum_probs=40.5
Q ss_pred CCceEecCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEe
Q 003428 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (820)
Q Consensus 571 ~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l~~~L~~gd~VeIlT 624 (820)
+|+.++...|+|+-++.-.+-+ .+-=.-+||=...-+.+|++||.|-.|-
T Consensus 6 N~k~~~~~~~~tl~~lr~~~k~----~~DI~I~NGF~~~~d~~L~e~D~v~~Ik 55 (57)
T PF14453_consen 6 NEKEIETEENTTLFELRKESKP----DADIVILNGFPTKEDIELKEGDEVFLIK 55 (57)
T ss_pred CCEEEEcCCCcCHHHHHHhhCC----CCCEEEEcCcccCCccccCCCCEEEEEe
Confidence 5788999999999777655544 4445678999999999999999998774
No 100
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=41.25 E-value=28 Score=32.70 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.9
Q ss_pred EEEECCEecCCCccCCCCCeEEEEecc
Q 003428 600 AAKVNGNLVSPTHVLANAEVVEIITYN 626 (820)
Q Consensus 600 ~akVNG~~v~l~~~L~~gd~VeIlT~~ 626 (820)
..+|||+.+-.++.++.||+|+|-..+
T Consensus 35 rV~vNG~~aKpS~~VK~GD~l~i~~~~ 61 (100)
T COG1188 35 RVKVNGQRAKPSKEVKVGDILTIRFGN 61 (100)
T ss_pred eEEECCEEcccccccCCCCEEEEEeCC
Confidence 467999999999999999999997654
No 101
>PRK08577 hypothetical protein; Provisional
Probab=41.02 E-value=25 Score=34.21 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=20.9
Q ss_pred eEEEEEEecccchHHHHHHHhhc
Q 003428 797 QWFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 797 ~~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
-+|+|.+.|+.|+|++|+++|+.
T Consensus 57 ~~I~V~~~Dr~GvLa~I~~~l~~ 79 (136)
T PRK08577 57 VEIELVVEDRPGVLAKITGLLAE 79 (136)
T ss_pred EEEEEEEcCCCCHHHHHHHHHHH
Confidence 38999999999999999999875
No 102
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=40.92 E-value=18 Score=30.22 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=18.4
Q ss_pred EEEECCEecCC--CccCCCCCeEEE
Q 003428 600 AAKVNGNLVSP--THVLANAEVVEI 622 (820)
Q Consensus 600 ~akVNG~~v~l--~~~L~~gd~VeI 622 (820)
|..|||+.+.. .++|++||+|.|
T Consensus 43 gt~vng~~l~~~~~~~L~~gd~i~~ 67 (68)
T PF00498_consen 43 GTFVNGQRLGPGEPVPLKDGDIIRF 67 (68)
T ss_dssp -EEETTEEESSTSEEEE-TTEEEEE
T ss_pred cEEECCEEcCCCCEEECCCCCEEEc
Confidence 78899999998 567999999986
No 103
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=40.10 E-value=27 Score=44.24 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=32.0
Q ss_pred CceecccCCCceeeEEEEEEecccchHHHHHHHhhc
Q 003428 784 KIATWHNLEGHSIQWFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 784 ~~a~W~~~~~~sf~~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
..+.|++.....|.-|+|.+.||.|||++|++++..
T Consensus 771 ~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~ 806 (854)
T PRK01759 771 TEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSE 806 (854)
T ss_pred CEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHH
Confidence 368899987778889999999999999999999863
No 104
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=39.26 E-value=15 Score=42.70 Aligned_cols=52 Identities=27% Similarity=0.275 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHhh----cCCccccCCcccchHHHHHHHHHHc----CC--CH--------HHHHHHhhcccc
Q 003428 144 NELELVRRALMLAFEAH----DGQKRRSGEPFIIHPVEVARILGEL----EL--DW--------ESIAAGLLHDTV 201 (820)
Q Consensus 144 ~~~~~l~~A~~~A~~aH----~gQ~RksGePYi~Hpl~VA~ILael----gl--D~--------~tIiAALLHDvV 201 (820)
.+.++|+.-.++....+ +..+| +.|.+.|..+...+ +. +. .+.+||||||+=
T Consensus 27 ~~FQRLRrIkQLG~a~lvyPgAnHTR------FeHSLGV~~la~~~~~~l~~~~~~~~~~~~~~~~~~AALLHDIG 96 (421)
T COG1078 27 PEFQRLRRIKQLGLAYLVYPGANHTR------FEHSLGVYHLARRLLEHLEKNSEEEIDEEERLLVRLAALLHDIG 96 (421)
T ss_pred HHHHHHHHhhhccceeEecCCCcccc------cchhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHccC
Confidence 35666666555544421 22234 79999998877532 21 11 378999999973
No 105
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=38.06 E-value=30 Score=36.42 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=32.9
Q ss_pred EecCCCCcHhHHHhhcc----cccccce---------EEEEECCEec-CCCccCCC-CCe
Q 003428 575 KNLPKGATVVDYAYMIH----TEIGNKM---------VAAKVNGNLV-SPTHVLAN-AEV 619 (820)
Q Consensus 575 ~~lP~GaT~lDfAy~Ih----t~lg~~~---------~~akVNG~~v-~l~~~L~~-gd~ 619 (820)
++.+.|.|++|++..|+ +.++.+. =+++|||+.+ .-.+++.. |..
T Consensus 19 v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~vnG~~~laC~t~v~~~g~~ 78 (220)
T TIGR00384 19 VPADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNVNGKPVLACKTKVEDLGQP 78 (220)
T ss_pred EeCCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEECCEEhhhhhChHHHcCCC
Confidence 45669999999998876 3343331 1789999987 67888888 873
No 106
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=38.01 E-value=31 Score=34.67 Aligned_cols=58 Identities=24% Similarity=0.298 Sum_probs=34.0
Q ss_pred CcccchHHHHHHHHH----HcC-----CCHH-HHHHHhhccccccCCC-CC----HHHHHHH--hChHHHHHHhh
Q 003428 169 EPFIIHPVEVARILG----ELE-----LDWE-SIAAGLLHDTVEDTNV-VT----FERIEEE--FGATVRRIVEG 226 (820)
Q Consensus 169 ePYi~Hpl~VA~ILa----elg-----lD~~-tIiAALLHDvVEDT~~-~T----~eeI~~~--FG~~Va~LV~g 226 (820)
+..+.|.+.|+.+.. .++ .|.+ ..+||||||+-..... .. -.++-.. |.++++.+|..
T Consensus 12 ~~~~~Hs~~Va~~A~~ia~~~~~~~~~~d~~~l~~aaLLHDIGK~~~~~~~H~~~G~~iL~~~g~~~~i~~iI~~ 86 (164)
T TIGR00295 12 ESVRRHCLAVARVAMELAENIRKKGHEVDMDLVLKGALLHDIGRARTHGFEHFVKGAEILRKEGVDEKIVRIAER 86 (164)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 345689999987643 344 4544 5789999998642210 01 1123333 45668887753
No 107
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=37.61 E-value=81 Score=26.72 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=45.0
Q ss_pred CeeeecCCCce--EecCCCCcHhHHHhhcccccccce--EEEEECCEecCCCcc-----CCCCCeEEEEec
Q 003428 564 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGNKM--VAAKVNGNLVSPTHV-----LANAEVVEIITY 625 (820)
Q Consensus 564 ~I~VftP~G~i--~~lP~GaT~lDfAy~Iht~lg~~~--~~akVNG~~v~l~~~-----L~~gd~VeIlT~ 625 (820)
.|+|-+++|+. ++++...|+.++--.|+...|-.+ ..-..+|+...-+.+ +++|++|.++-.
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~ 72 (76)
T cd01806 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLA 72 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEE
Confidence 37788999986 557889999999888877765432 234457877654443 789999998753
No 108
>PRK10119 putative hydrolase; Provisional
Probab=37.25 E-value=62 Score=34.72 Aligned_cols=51 Identities=20% Similarity=0.124 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhcCCccccCCcccchHHHHHHHHH----HcCCCHH-HHHHHhhccccc
Q 003428 149 VRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILG----ELELDWE-SIAAGLLHDTVE 202 (820)
Q Consensus 149 l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa----elglD~~-tIiAALLHDvVE 202 (820)
+..+..|..+...+. .+|-. +.|-.+|..... .-+.|.+ ..+||||||+..
T Consensus 7 ~~~~~~~v~~~l~~~--~~~HD-~~Hi~RV~~lA~~Ia~~e~~D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 7 QAQFENWLKNHHQHQ--DAAHD-ICHFRRVWATAQKLAADDDVDMLVVLTACYFHDIVS 62 (231)
T ss_pred HHHHHHHHHHHhhcC--CCccC-hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcch
Confidence 445555665544432 23333 578877764433 3366766 469999999974
No 109
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.00 E-value=32 Score=28.19 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=19.5
Q ss_pred EEEEEEecccchHHHHHHHhhc
Q 003428 798 WFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 798 ~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
.|+|.+.|+.|+|++|+++|+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~ 23 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAE 23 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHh
Confidence 3788999999999999999864
No 110
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=36.81 E-value=34 Score=42.71 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=30.5
Q ss_pred CCceecccCCCceeeEEEEEEecccchHHHHHHHhh
Q 003428 783 SKIATWHNLEGHSIQWFSVVCIDRRGNFHSVEIVMQ 818 (820)
Q Consensus 783 ~~~a~W~~~~~~sf~~i~V~~~DR~Gll~dvt~vi~ 818 (820)
...+.|.+.....+..++|+|.||.|+|++|+++++
T Consensus 778 ~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~ 813 (867)
T COG2844 778 PPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFA 813 (867)
T ss_pred CCceeeccccCCCceEEEEEeCCcccHHHHHHHHHH
Confidence 345678887677777999999999999999999986
No 111
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=35.66 E-value=35 Score=43.12 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=31.0
Q ss_pred ceecccCCCceeeEEEEEEecccchHHHHHHHhhc
Q 003428 785 IATWHNLEGHSIQWFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 785 ~a~W~~~~~~sf~~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
.+.+++.....|.-+.|.|.||.|||++||+++..
T Consensus 768 ~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~ 802 (850)
T TIGR01693 768 RVTILNTASRKATIMEVRALDRPGLLARVGRTLEE 802 (850)
T ss_pred eEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHH
Confidence 57888887777889999999999999999999874
No 112
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=35.10 E-value=1.3e+02 Score=34.86 Aligned_cols=82 Identities=18% Similarity=0.163 Sum_probs=49.7
Q ss_pred cCCCCChHHHHHhHhhhhcCCCh-hhHHHHHHHH-------HHHHHhhcCCccccC--CcccchHHHHHHHHHHcCCCHH
Q 003428 121 AFKEDSPERLWEDLRPTISYLSP-NELELVRRAL-------MLAFEAHDGQKRRSG--EPFIIHPVEVARILGELELDWE 190 (820)
Q Consensus 121 ~~~~~~~~~~~~~l~~~~~~~~~-~~~~~l~~A~-------~~A~~aH~gQ~RksG--ePYi~Hpl~VA~ILaelglD~~ 190 (820)
...++++|.+|+++...+..-.+ .-++.+.+.= +++.-.+-.|....- .+...|-+.|...++.+..+..
T Consensus 168 ~L~~~~~ERi~~El~kiL~~~~p~~~l~~L~~~g~L~~l~PEl~~l~~~~Q~~~~H~e~dv~~Htl~~l~~~~~l~~~l~ 247 (409)
T PRK10885 168 ELDALTPERVWKETERALMERNPQVFFQVLRDCGALAVLLPEIDALFGVPQPAKWHPEIDTGIHTLMVLDQAAKLSPSLD 247 (409)
T ss_pred hhhhCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhHHHHHhhHHHHHhcCCCCcCCCCCCcHHHHHHHHHHHHHhcCCCHH
Confidence 35567899999999887744333 2233333321 122222223432211 2345798888888887777777
Q ss_pred HHHHHhhccccc
Q 003428 191 SIAAGLLHDTVE 202 (820)
Q Consensus 191 tIiAALLHDvVE 202 (820)
...||||||+=.
T Consensus 248 lr~AaLlHDlGK 259 (409)
T PRK10885 248 VRFAALCHDLGK 259 (409)
T ss_pred HHHHHHhccccC
Confidence 889999999853
No 113
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=34.86 E-value=49 Score=35.80 Aligned_cols=52 Identities=25% Similarity=0.255 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhcCCccccCCcccchHHHHHHHHHHcCCCHHH-HHHHhhccc
Q 003428 149 VRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWES-IAAGLLHDT 200 (820)
Q Consensus 149 l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILaelglD~~t-IiAALLHDv 200 (820)
|.+|+++....-+..-.....|-|.|.+++|.....-.-+++- ..+||+||+
T Consensus 41 i~eA~~~L~~LvDeSDPD~d~~~i~H~lQTAEaiR~d~~~~dW~~LtGLiHDL 93 (253)
T PF05153_consen 41 IWEALELLNTLVDESDPDTDLPQIQHALQTAEAIRRDHPDPDWMQLTGLIHDL 93 (253)
T ss_dssp HHHHHHHGGG---TT-TT--S-HHHHHHHHHHHHHHHSTT-HHHHHHHHHTTG
T ss_pred HHHHHHHHHHhccCccCCCchhHHHHHHHHHHHHHHhCCCcchhhheehhccc
Confidence 4566666555544333335678899999999999865445554 579999996
No 114
>PRK12704 phosphodiesterase; Provisional
Probab=34.85 E-value=37 Score=40.63 Aligned_cols=35 Identities=43% Similarity=0.614 Sum_probs=26.4
Q ss_pred cCCcccchHHHHHHHH---H-HcCCCHH-HHHHHhhcccc
Q 003428 167 SGEPFIIHPVEVARIL---G-ELELDWE-SIAAGLLHDTV 201 (820)
Q Consensus 167 sGePYi~Hpl~VA~IL---a-elglD~~-tIiAALLHDvV 201 (820)
.|...+.|.++||.+. + .+|+|.+ ...||||||+=
T Consensus 332 ~~qn~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIG 371 (520)
T PRK12704 332 YGQNVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIG 371 (520)
T ss_pred CCCcHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccC
Confidence 3455678999998775 3 5788765 46899999974
No 115
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.36 E-value=42 Score=29.28 Aligned_cols=22 Identities=5% Similarity=0.049 Sum_probs=19.8
Q ss_pred EEEEEEecccchHHHHHHHhhc
Q 003428 798 WFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 798 ~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
.|.|.+-||.||++.||.+|++
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~ 24 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGD 24 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHH
Confidence 5778999999999999999975
No 116
>PRK12705 hypothetical protein; Provisional
Probab=33.97 E-value=36 Score=40.54 Aligned_cols=36 Identities=42% Similarity=0.609 Sum_probs=27.8
Q ss_pred cCCcccchHHHHHHHHH----HcCCCHH-HHHHHhhccccc
Q 003428 167 SGEPFIIHPVEVARILG----ELELDWE-SIAAGLLHDTVE 202 (820)
Q Consensus 167 sGePYi~Hpl~VA~ILa----elglD~~-tIiAALLHDvVE 202 (820)
.|...+.|.++||.+.. ++|+|++ ...||||||+=.
T Consensus 320 ygqnvl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK 360 (508)
T PRK12705 320 YGQNVLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGK 360 (508)
T ss_pred CCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCC
Confidence 45566789999988753 6788866 478999999854
No 117
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=32.45 E-value=72 Score=27.00 Aligned_cols=60 Identities=15% Similarity=0.299 Sum_probs=41.1
Q ss_pred CeeeecCCCceEec--CCCCcHhHHH--hhccccccc-ceEEEEECCEecCCCcc-----CCCCCeEEEE
Q 003428 564 RVFVFTPRGEIKNL--PKGATVVDYA--YMIHTEIGN-KMVAAKVNGNLVSPTHV-----LANAEVVEII 623 (820)
Q Consensus 564 ~I~VftP~G~i~~l--P~GaT~lDfA--y~Iht~lg~-~~~~akVNG~~v~l~~~-----L~~gd~VeIl 623 (820)
.|+|.+++|+.+.+ ....|.-.+. |+-...+.. .-+.-..||+.++.+.. +++||+|+++
T Consensus 2 ~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 2 TIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence 36788888876555 6666766664 444444555 55788889988887765 7999999985
No 118
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=31.84 E-value=42 Score=40.10 Aligned_cols=34 Identities=41% Similarity=0.553 Sum_probs=25.9
Q ss_pred CCcccchHHHHHHHH---H-HcCCCHHH-HHHHhhcccc
Q 003428 168 GEPFIIHPVEVARIL---G-ELELDWES-IAAGLLHDTV 201 (820)
Q Consensus 168 GePYi~Hpl~VA~IL---a-elglD~~t-IiAALLHDvV 201 (820)
|...+.|.+.||.+. + .+|+|++. ..||||||+=
T Consensus 327 ~~~~l~Hs~~VA~lA~~LA~~lgld~~~a~~AGLLHDIG 365 (514)
T TIGR03319 327 GQNVLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIG 365 (514)
T ss_pred CccHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcC
Confidence 334578999998875 3 67888754 5799999984
No 119
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=31.66 E-value=49 Score=27.62 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=19.8
Q ss_pred EEEEEEecccchHHHHHHHhhc
Q 003428 798 WFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 798 ~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
.|.|..-|+.|.|++|+++|+.
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~ 24 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSE 24 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHH
Confidence 5788899999999999999975
No 120
>PRK05092 PII uridylyl-transferase; Provisional
Probab=29.62 E-value=50 Score=42.25 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=30.1
Q ss_pred ceecccCCCceeeEEEEEEecccchHHHHHHHhhc
Q 003428 785 IATWHNLEGHSIQWFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 785 ~a~W~~~~~~sf~~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
.+.+++.....+..|.|.+.||.|||++||++|+.
T Consensus 832 ~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~ 866 (931)
T PRK05092 832 RVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSD 866 (931)
T ss_pred EEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHH
Confidence 46777776667779999999999999999999875
No 121
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=28.48 E-value=45 Score=26.71 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=18.6
Q ss_pred EEEEEecccchHHHHHHHhhc
Q 003428 799 FSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 799 i~V~~~DR~Gll~dvt~vi~~ 819 (820)
|.|...|+.|.|++|+++|+.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~ 21 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAE 21 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHH
Confidence 467899999999999999874
No 122
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=27.55 E-value=15 Score=25.46 Aligned_cols=16 Identities=19% Similarity=0.530 Sum_probs=12.2
Q ss_pred CCCeeeecCCCceEec
Q 003428 562 GSRVFVFTPRGEIKNL 577 (820)
Q Consensus 562 ~~~I~VftP~G~i~~l 577 (820)
...+.+|+|+|+++.+
T Consensus 2 D~~~t~FSp~Grl~QV 17 (23)
T PF10584_consen 2 DRSITTFSPDGRLFQV 17 (23)
T ss_dssp SSSTTSBBTTSSBHHH
T ss_pred CCCceeECCCCeEEee
Confidence 3467799999998753
No 123
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=27.33 E-value=93 Score=34.64 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=36.4
Q ss_pred CCceEec-CCCCcHhHHHhhcccccccc-----------e--EEEEECCEe--c-CCCccCCCCCeEE
Q 003428 571 RGEIKNL-PKGATVVDYAYMIHTEIGNK-----------M--VAAKVNGNL--V-SPTHVLANAEVVE 621 (820)
Q Consensus 571 ~G~i~~l-P~GaT~lDfAy~Iht~lg~~-----------~--~~akVNG~~--v-~l~~~L~~gd~Ve 621 (820)
||..+++ |+|.|.||.|.+.+..|=.- | =-+.|+|+. + .=.+++++|.+|+
T Consensus 74 DGk~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEVeG~~~lv~AC~tpV~eGM~V~ 141 (297)
T PTZ00305 74 NKRPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVDGTQNLVVSCATVALPGMSII 141 (297)
T ss_pred CCEEEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEECCCcCcccccCCcCCCCCEEE
Confidence 9999999 99999999998864443222 2 145678752 2 3456788888776
No 124
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=27.28 E-value=2.1e+02 Score=24.18 Aligned_cols=61 Identities=13% Similarity=0.184 Sum_probs=45.3
Q ss_pred eeeecCCCce--EecCCCCcHhHHHhhcccccccc--eEEEEECCEecCCCcc-----CCCCCeEEEEec
Q 003428 565 VFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGNK--MVAAKVNGNLVSPTHV-----LANAEVVEIITY 625 (820)
Q Consensus 565 I~VftP~G~i--~~lP~GaT~lDfAy~Iht~lg~~--~~~akVNG~~v~l~~~-----L~~gd~VeIlT~ 625 (820)
|+|-+++|+. ++++...|+.++=-.|+...|-. ...-..+|+...-+.. +++|++|.++..
T Consensus 3 i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (76)
T cd01803 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (76)
T ss_pred EEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 7888999875 57778889999998888776644 3344568887665543 688999988753
No 125
>PRK04374 PII uridylyl-transferase; Provisional
Probab=27.16 E-value=59 Score=41.38 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=30.5
Q ss_pred ceecccCCCceeeEEEEEEecccchHHHHHHHhhc
Q 003428 785 IATWHNLEGHSIQWFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 785 ~a~W~~~~~~sf~~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
.+.+++.....+..|.|.+.||.|||++|+.++..
T Consensus 785 ~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~ 819 (869)
T PRK04374 785 RVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRM 819 (869)
T ss_pred eEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHH
Confidence 56788876777779999999999999999999874
No 126
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=26.79 E-value=83 Score=35.66 Aligned_cols=30 Identities=37% Similarity=0.388 Sum_probs=23.3
Q ss_pred cchHHHHHHHHH----HcCCCHHH-HHHHhhcccc
Q 003428 172 IIHPVEVARILG----ELELDWES-IAAGLLHDTV 201 (820)
Q Consensus 172 i~Hpl~VA~ILa----elglD~~t-IiAALLHDvV 201 (820)
++|.++|+.+.. .++.+++. -+|||+||+=
T Consensus 64 ~~Hsl~V~~iar~~~~~l~~~~~l~~aaaL~HDiG 98 (336)
T PRK01286 64 LTHTLEVAQIARTIARALRLNEDLTEAIALGHDLG 98 (336)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC
Confidence 789999999764 45776654 4799999974
No 127
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.61 E-value=62 Score=26.95 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=20.0
Q ss_pred EEEEEEecccchHHHHHHHhhc
Q 003428 798 WFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 798 ~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
+|+|..-|+.|.|++|+++++.
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~ 24 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGD 24 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7889999999999999999864
No 128
>PRK03381 PII uridylyl-transferase; Provisional
Probab=26.40 E-value=59 Score=40.79 Aligned_cols=35 Identities=14% Similarity=0.222 Sum_probs=29.9
Q ss_pred ceecccCCCceeeEEEEEEecccchHHHHHHHhhc
Q 003428 785 IATWHNLEGHSIQWFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 785 ~a~W~~~~~~sf~~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
.+.|.+.....+..|.|.|-||.|||++||.+|..
T Consensus 696 ~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~ 730 (774)
T PRK03381 696 RVLWLDGASPDATVLEVRAADRPGLLARLARALER 730 (774)
T ss_pred EEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHH
Confidence 45677776666779999999999999999999874
No 129
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=25.75 E-value=65 Score=41.16 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=28.9
Q ss_pred ceecccCCCceeeEEEEEEecccchHHHHHHHhhc
Q 003428 785 IATWHNLEGHSIQWFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 785 ~a~W~~~~~~sf~~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
.+.+++.....+..|.|.+-||.|||++||.+|.+
T Consensus 803 ~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~ 837 (895)
T PRK00275 803 QVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLE 837 (895)
T ss_pred EEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHH
Confidence 45566665666669999999999999999999975
No 130
>PRK11507 ribosome-associated protein; Provisional
Probab=25.74 E-value=76 Score=28.00 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=18.1
Q ss_pred EEEECCEecCCCc-cCCCCCeEEE
Q 003428 600 AAKVNGNLVSPTH-VLANAEVVEI 622 (820)
Q Consensus 600 ~akVNG~~v~l~~-~L~~gd~VeI 622 (820)
..+|||+.-.-.. +|.+||+|++
T Consensus 38 ~V~VNGeve~rRgkKl~~GD~V~~ 61 (70)
T PRK11507 38 QVKVDGAVETRKRCKIVAGQTVSF 61 (70)
T ss_pred ceEECCEEecccCCCCCCCCEEEE
Confidence 5789997654444 6999999998
No 131
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=25.49 E-value=47 Score=37.30 Aligned_cols=34 Identities=32% Similarity=0.349 Sum_probs=25.5
Q ss_pred CcccchHHHHHHHHH----HcCCCH-HHHHHHhhccccc
Q 003428 169 EPFIIHPVEVARILG----ELELDW-ESIAAGLLHDTVE 202 (820)
Q Consensus 169 ePYi~Hpl~VA~ILa----elglD~-~tIiAALLHDvVE 202 (820)
++...|.+.||.+.. .+|+|. +.-+||||||+=.
T Consensus 195 ~~~~~HSl~VA~~A~~LA~~~g~d~~~a~~AGLLHDIGK 233 (342)
T PRK07152 195 EYRYKHCLRVAQLAAELAKKNNLDPKKAYYAGLYHDITK 233 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhhc
Confidence 455789999987753 457765 4578999999854
No 132
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=25.26 E-value=1.5e+02 Score=25.34 Aligned_cols=62 Identities=13% Similarity=0.159 Sum_probs=43.8
Q ss_pred CeeeecCCCce--EecCCCCcHhHHHhhccccccc--ce--EEEEECCEecCCCc-----cCCCCCeEEEEec
Q 003428 564 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGN--KM--VAAKVNGNLVSPTH-----VLANAEVVEIITY 625 (820)
Q Consensus 564 ~I~VftP~G~i--~~lP~GaT~lDfAy~Iht~lg~--~~--~~akVNG~~v~l~~-----~L~~gd~VeIlT~ 625 (820)
.|+|-++.|+. ++++...|+.|+=..|+...|- .+ ..-..+|+...-+. -+++|++|-++-+
T Consensus 2 ~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~ 74 (77)
T cd01805 2 KITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVS 74 (77)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEe
Confidence 47889999976 4666788999998888776654 21 23335788776443 3789999887654
No 133
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=25.25 E-value=68 Score=34.09 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=32.7
Q ss_pred eEecC-CCCcHhHHHhhcc----cccccce---------EEEEECCEec-CCCccCCC--CCeEEEEe
Q 003428 574 IKNLP-KGATVVDYAYMIH----TEIGNKM---------VAAKVNGNLV-SPTHVLAN--AEVVEIIT 624 (820)
Q Consensus 574 i~~lP-~GaT~lDfAy~Ih----t~lg~~~---------~~akVNG~~v-~l~~~L~~--gd~VeIlT 624 (820)
-+++| .|.|++|++..|+ +.++.+. =+++|||+.+ .-.+++.. |+++.|-.
T Consensus 21 ~v~~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~vnG~~~laC~t~~~~~~~~~~tiep 88 (232)
T PRK05950 21 EVDVDECGPMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNINGKNGLACITPISDLKKGKIVIRP 88 (232)
T ss_pred EeCCCCCCCHHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEECCcCccchhChHhHcCCCeEEEEE
Confidence 45677 8999999999996 2233221 1799999863 34555544 45555533
No 134
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=23.92 E-value=1.2e+02 Score=30.97 Aligned_cols=33 Identities=27% Similarity=0.303 Sum_probs=24.5
Q ss_pred CCcccchHHHHHHHHHHcCCCHHH-HHHHhhccc
Q 003428 168 GEPFIIHPVEVARILGELELDWES-IAAGLLHDT 200 (820)
Q Consensus 168 GePYi~Hpl~VA~ILaelglD~~t-IiAALLHDv 200 (820)
.+|-|.|.++.|.....-.-|.+- =.+||+||+
T Consensus 94 Depni~Ha~QtAE~iR~~~Pd~dWlHLtaLiHDL 127 (204)
T KOG1573|consen 94 DEPNIQHALQTAEAIRKDYPDEDWLHLTALIHDL 127 (204)
T ss_pred chHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 578899999999988754444443 467999985
No 135
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=23.23 E-value=94 Score=38.56 Aligned_cols=51 Identities=24% Similarity=0.355 Sum_probs=37.9
Q ss_pred CCceEecCCCCcHhHHHhhc---------ccccccc--eE--EEEECC--EecC-CCccCCCCCeEE
Q 003428 571 RGEIKNLPKGATVVDYAYMI---------HTEIGNK--MV--AAKVNG--NLVS-PTHVLANAEVVE 621 (820)
Q Consensus 571 ~G~i~~lP~GaT~lDfAy~I---------ht~lg~~--~~--~akVNG--~~v~-l~~~L~~gd~Ve 621 (820)
||..+++|+|.|+|+.|... |+++|.- |. -..|+| |+++ =.+|..+|.+|.
T Consensus 7 DG~ei~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg~~k~~~SC~tpv~dGM~I~ 73 (693)
T COG1034 7 DGKEIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEGAPKLVASCATPVTDGMVIS 73 (693)
T ss_pred CCEEEecCCCcHHHHHHHHcCCCCCcccccCCCCcccceeEEEEEecCCCccccccccccCCCeEEe
Confidence 89999999999999999875 5555432 22 567788 5544 356899999943
No 136
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=22.74 E-value=59 Score=26.64 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=17.1
Q ss_pred cccCCCeeeecCCCceEecCCC
Q 003428 559 DLLGSRVFVFTPRGEIKNLPKG 580 (820)
Q Consensus 559 dL~~~~I~VftP~G~i~~lP~G 580 (820)
++..+.+.|.||||+.+.+|..
T Consensus 2 ei~~~~aiVlT~dGeF~~ik~~ 23 (56)
T PF12791_consen 2 EIKKKYAIVLTPDGEFIKIKRK 23 (56)
T ss_pred cCcCCEEEEEcCCCcEEEEeCC
Confidence 3456788999999998877654
No 137
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=22.08 E-value=71 Score=23.40 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=18.4
Q ss_pred EEEEEecccchHHHHHHHhhc
Q 003428 799 FSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 799 i~V~~~DR~Gll~dvt~vi~~ 819 (820)
|.|.+-|+.|.+++|+++|+.
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~ 21 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAE 21 (60)
T ss_pred CEEEecCCCchHHHHHHHHHH
Confidence 468899999999999999874
No 138
>PF04031 Las1: Las1-like ; InterPro: IPR007174 Las1 is an essential nuclear protein involved in cell morphogenesis and cell surface growth [].
Probab=22.02 E-value=2.6e+02 Score=28.07 Aligned_cols=72 Identities=24% Similarity=0.265 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHHHhhcCCccccCCcccchHHHHHHHHHHcCCCHHHHHHHhhcc--ccccCCCCCHHHHHHHhChHHH
Q 003428 144 NELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHD--TVEDTNVVTFERIEEEFGATVR 221 (820)
Q Consensus 144 ~~~~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILaelglD~~tIiAALLHD--vVEDT~~~T~eeI~~~FG~~Va 221 (820)
.+.+...+|++.-... +.| | +.+.|+++....|. .++|+| ..+.....+..+++..|+-.+.
T Consensus 22 ~~~~~~~~al~~v~~W---~~R--~-~~lP~aVe~Ta~Ll----------~~~l~d~~~~~~~~~~~~~~lr~~ysmaiv 85 (154)
T PF04031_consen 22 DDPESRRRALERVSAW---KSR--G-SKLPHAVESTASLL----------EAQLQDEEDPSSSGARSEQELRLSYSMAIV 85 (154)
T ss_pred CCHHHHHHHHHHHHHH---HHc--C-CCCcHHHHHHHHHH----------HHHccCccccccccCCCHHHHHHHHHHhHH
Confidence 3566667777665433 122 2 55778888766544 577777 2222223567889999999999
Q ss_pred HHHhhhcccc
Q 003428 222 RIVEGETKVS 231 (820)
Q Consensus 222 ~LV~glTkvs 231 (820)
+.|.|++...
T Consensus 86 RfVNgl~D~~ 95 (154)
T PF04031_consen 86 RFVNGLVDPS 95 (154)
T ss_pred HHHHHhhhHh
Confidence 9999988654
No 139
>PRK04435 hypothetical protein; Provisional
Probab=22.00 E-value=1.2e+02 Score=30.05 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=22.2
Q ss_pred ceeeEEEEEEecccchHHHHHHHhhc
Q 003428 794 HSIQWFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 794 ~sf~~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
+.--+|.+.+.|+.|+|++|+++|+.
T Consensus 67 ~r~vtL~i~l~Dr~GlLs~Il~~IA~ 92 (147)
T PRK04435 67 GKIITLSLLLEDRSGTLSKVLNVIAE 92 (147)
T ss_pred CcEEEEEEEEecCCCHHHHHHHHHHH
Confidence 33448999999999999999999975
No 140
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=21.48 E-value=3.9e+02 Score=23.85 Aligned_cols=62 Identities=10% Similarity=0.190 Sum_probs=42.0
Q ss_pred CeeeecCCCce--EecCCCCcHhHHH--hhcccccccceEEEEECCEecCCCcc-----CCCCCeEEEEec
Q 003428 564 RVFVFTPRGEI--KNLPKGATVVDYA--YMIHTEIGNKMVAAKVNGNLVSPTHV-----LANAEVVEIITY 625 (820)
Q Consensus 564 ~I~VftP~G~i--~~lP~GaT~lDfA--y~Iht~lg~~~~~akVNG~~v~l~~~-----L~~gd~VeIlT~ 625 (820)
.|+|-+++|+. +.+....|..++. |.-...+--.-+.-.-||+.+..+.. +++||+|+++..
T Consensus 13 ~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~ 83 (87)
T cd01763 13 NLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLE 83 (87)
T ss_pred EEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEe
Confidence 47799999986 4555667777774 44344443344455567887776554 799999999764
No 141
>PRK05327 rpsD 30S ribosomal protein S4; Validated
Probab=20.97 E-value=92 Score=32.68 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.0
Q ss_pred EEEECCEecC-CCccCCCCCeEEEE
Q 003428 600 AAKVNGNLVS-PTHVLANAEVVEII 623 (820)
Q Consensus 600 ~akVNG~~v~-l~~~L~~gd~VeIl 623 (820)
...|||+.|. .+++|+.||+|+|-
T Consensus 119 ~V~VNgk~v~~ps~~v~~GD~I~v~ 143 (203)
T PRK05327 119 HILVNGKKVNIPSYRVKPGDVIEVR 143 (203)
T ss_pred cEEECCEEECCCCcCCCCCCEEEEC
Confidence 5779999997 79999999999874
No 142
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=20.95 E-value=49 Score=35.10 Aligned_cols=101 Identities=19% Similarity=0.229 Sum_probs=47.7
Q ss_pred CcccchHHHHHHHHHH-------cC--CCHHH-HHHHhhccccccCCCCCHHHHH---HHhChHHHHHHhhhcccccccc
Q 003428 169 EPFIIHPVEVARILGE-------LE--LDWES-IAAGLLHDTVEDTNVVTFERIE---EEFGATVRRIVEGETKVSKLGK 235 (820)
Q Consensus 169 ePYi~Hpl~VA~ILae-------lg--lD~~t-IiAALLHDvVEDT~~~T~eeI~---~~FG~~Va~LV~glTkvs~l~~ 235 (820)
+..-.|...||.|..- .| .|+.. ...||+||..|-.. .||. +.+-++...++..|.+...-.-
T Consensus 28 ~nVA~HSf~Va~iA~~Lg~iee~~G~~vd~~~lyekAL~HD~~E~Ft----GDI~TPVKy~tPelr~~~~~VE~~m~~~~ 103 (215)
T PF12917_consen 28 HNVAEHSFKVAMIAQFLGDIEEQFGNEVDWKELYEKALNHDYPEIFT----GDIKTPVKYATPELREMLAQVEEEMTENF 103 (215)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTGGGGTS--------S-SSSS-HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCccCHHHHHHHHhccccHHHHc----CCCCCcccccCHHHHHHHHHHHHHHHHHH
Confidence 3445788888776532 23 46644 48899999998542 2222 2344455544444433110000
Q ss_pred cccccCCcchhhhhHHHHHHHHHhccCC-ceEEeeeehhhhhcc
Q 003428 236 LKCKNENHSVQDVKADDLRQMFLAMTEE-VRVIIVKLADRLHNM 278 (820)
Q Consensus 236 ~~~~~~~~~~~~~qae~~RkmLLam~~D-~RViLIKLADRLhNM 278 (820)
+.. ..+..-.+.+|.++.---+| +-..+|+.||.++-+
T Consensus 104 i~~-----~iP~e~q~~Y~~~l~E~KDdt~EG~Iv~~ADkidal 142 (215)
T PF12917_consen 104 IKK-----EIPEEFQEAYRRRLKEGKDDTLEGQIVKAADKIDAL 142 (215)
T ss_dssp HHH-----HS-GGGHHHHHHHHS---SSSHHHHHHHHHHHHHHH
T ss_pred HHh-----hCCHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHH
Confidence 000 00111223455555433222 566789999998765
No 143
>PRK03059 PII uridylyl-transferase; Provisional
Probab=20.67 E-value=90 Score=39.70 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=29.5
Q ss_pred ceecccCCCceeeEEEEEEecccchHHHHHHHhhc
Q 003428 785 IATWHNLEGHSIQWFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 785 ~a~W~~~~~~sf~~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
.+.+.+.....+..|.|.+-||.|||++|+.+++.
T Consensus 775 ~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~ 809 (856)
T PRK03059 775 RVDLRPDERGQYYILSVSANDRPGLLYAIARVLAE 809 (856)
T ss_pred eEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHH
Confidence 35677766666779999999999999999999874
Done!