Query 003428
Match_columns 820
No_of_seqs 469 out of 2269
Neff 5.7
Searched_HMMs 29240
Date Tue Mar 26 00:52:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003428.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003428hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vj7_A Bifunctional RELA/SPOT; 100.0 1E-101 4E-106 857.3 23.7 376 125-553 7-382 (393)
2 3l9d_A SMU.1046C, putative GTP 100.0 1.2E-41 4.2E-46 357.1 14.5 169 298-498 19-195 (255)
3 2be3_A GTP pyrophosphokinase; 100.0 2.7E-36 9.1E-41 312.9 16.0 163 371-562 43-213 (226)
4 3nqw_A CG11900; stringent resp 100.0 6.7E-34 2.3E-38 285.3 7.3 163 143-319 3-172 (179)
5 3nr1_A HD domain-containing pr 100.0 3.1E-32 1.1E-36 273.0 8.4 131 144-288 2-136 (178)
6 3hvz_A Uncharacterized protein 99.9 5.2E-23 1.8E-27 179.5 6.6 70 559-628 2-71 (78)
7 1tke_A Threonyl-tRNA synthetas 99.7 1.8E-17 6.1E-22 171.4 9.4 122 564-712 1-129 (224)
8 2eki_A DRG 1, developmentally- 99.5 6.5E-14 2.2E-18 125.1 7.1 65 563-627 10-89 (93)
9 2kmm_A Guanosine-3',5'-BIS(dip 99.4 5.9E-13 2E-17 113.4 7.7 65 564-628 2-66 (73)
10 1wwt_A Threonyl-tRNA synthetas 99.4 9.2E-14 3.1E-18 123.2 1.7 66 563-628 10-76 (88)
11 1qf6_A THRRS, threonyl-tRNA sy 99.3 2.3E-12 7.7E-17 152.1 8.0 119 565-710 2-127 (642)
12 1nyr_A Threonyl-tRNA synthetas 99.2 1.4E-11 4.8E-16 145.5 7.3 120 564-710 3-129 (645)
13 1wxq_A GTP-binding protein; st 98.9 2.3E-10 7.8E-15 127.8 3.2 64 563-626 318-396 (397)
14 4a9a_A Ribosome-interacting GT 96.9 0.0011 3.8E-08 73.4 7.4 61 564-624 300-375 (376)
15 1f0z_A THis protein; ubiquitin 96.9 0.0011 3.8E-08 55.3 5.1 53 571-625 6-62 (66)
16 1tyg_B YJBS; alpha beta barrel 96.9 0.0014 4.9E-08 58.0 6.1 55 569-625 24-83 (87)
17 1rws_A Hypothetical protein PF 96.8 0.00042 1.4E-08 59.7 2.3 56 567-624 17-72 (77)
18 2hj1_A Hypothetical protein; s 96.8 0.00054 1.8E-08 61.9 2.8 54 574-627 29-87 (97)
19 2l32_A Small archaeal modifier 96.7 0.0008 2.7E-08 57.8 3.4 51 572-625 12-62 (74)
20 1ryj_A Unknown; beta/alpha pro 96.5 0.0028 9.7E-08 53.5 5.4 50 574-625 17-66 (70)
21 2cu3_A Unknown function protei 96.4 0.0042 1.4E-07 51.4 5.7 52 571-625 5-60 (64)
22 2k5p_A THis protein, thiamine- 96.3 0.002 6.9E-08 55.8 3.3 55 571-626 6-66 (78)
23 2dby_A GTP-binding protein; GD 96.3 0.0028 9.6E-08 70.0 4.9 62 563-624 283-366 (368)
24 2kl0_A Putative thiamin biosyn 96.3 0.0036 1.2E-07 53.5 4.5 53 571-626 6-62 (73)
25 1jal_A YCHF protein; nucleotid 96.2 0.0031 1.1E-07 69.5 5.0 62 563-624 278-361 (363)
26 2ohf_A Protein OLA1, GTP-bindi 96.1 0.0053 1.8E-07 68.5 5.9 64 563-626 304-389 (396)
27 2q5w_D Molybdopterin convertin 95.3 0.01 3.4E-07 50.4 3.4 52 573-624 18-72 (77)
28 3po0_A Small archaeal modifier 94.8 0.037 1.3E-06 48.3 5.6 51 574-624 21-84 (89)
29 1vjk_A Molybdopterin convertin 94.6 0.028 9.6E-07 50.2 4.4 52 573-624 29-93 (98)
30 1ni3_A YCHF GTPase, YCHF GTP-b 94.6 0.014 4.7E-07 65.0 2.8 62 563-624 306-389 (392)
31 1fm0_D Molybdopterin convertin 93.3 0.099 3.4E-06 44.5 5.2 47 578-624 23-76 (81)
32 2g1e_A Hypothetical protein TA 90.8 0.2 7E-06 43.3 4.2 51 574-624 18-85 (90)
33 2l52_A Methanosarcina acetivor 87.8 0.46 1.6E-05 42.5 4.3 50 574-624 22-94 (99)
34 3dwg_C 9.5 kDa culture filtrat 87.6 0.64 2.2E-05 40.7 5.1 50 575-625 21-89 (93)
35 3rpf_C Molybdopterin convertin 86.9 0.56 1.9E-05 39.5 4.2 51 573-624 14-69 (74)
36 3dto_A BH2835 protein; all alp 84.3 1.6 5.4E-05 44.8 6.8 54 146-202 4-62 (223)
37 1v8c_A MOAD related protein; r 82.8 1.4 4.6E-05 43.4 5.3 51 574-625 17-83 (168)
38 2qjl_A URM1, ubiquitin-related 76.7 3.5 0.00012 36.6 5.5 50 575-624 24-94 (99)
39 3kew_A DHHA1 domain protein; s 72.7 3.1 0.00011 43.0 4.8 72 612-710 74-149 (241)
40 2e1b_A PH0108, 216AA long hypo 69.7 5 0.00017 40.8 5.4 70 613-710 76-154 (216)
41 2ibn_A Inositol oxygenase; red 66.9 4.8 0.00016 41.7 4.5 52 149-200 38-90 (250)
42 1v4p_A Alanyl-tRNA synthetase; 64.5 6.8 0.00023 37.3 4.9 55 648-710 2-65 (157)
43 3djb_A Hydrolase, HD family; a 63.6 9.5 0.00032 38.9 6.1 54 146-202 4-62 (223)
44 3fm8_A Kinesin-like protein KI 62.3 6.1 0.00021 36.8 4.0 24 600-623 91-114 (124)
45 2pq7_A Predicted HD superfamil 55.0 14 0.00048 36.9 5.6 50 148-200 14-68 (220)
46 2qgs_A Protein Se1688; alpha-h 55.0 12 0.00042 37.8 5.1 54 147-203 5-64 (225)
47 3b57_A LIN1889 protein; Q92AN1 54.2 13 0.00045 37.0 5.2 54 147-203 5-63 (209)
48 1wgk_A Riken cDNA 2900073H19 p 53.2 15 0.0005 33.7 4.8 51 575-625 34-104 (114)
49 2k6p_A Uncharacterized protein 52.2 8.8 0.0003 33.3 3.0 24 601-624 28-51 (92)
50 2k9x_A Tburm1, uncharacterized 51.6 16 0.00056 33.2 4.8 27 599-625 68-98 (110)
51 2nyi_A Unknown protein; protei 51.2 8.8 0.0003 38.0 3.3 22 798-819 95-116 (195)
52 3gqs_A Adenylate cyclase-like 50.0 10 0.00036 33.7 3.2 23 600-622 70-92 (106)
53 3ccg_A HD superfamily hydrolas 49.9 9.4 0.00032 37.5 3.2 32 171-202 20-56 (190)
54 2o08_A BH1327 protein; putativ 49.5 9.6 0.00033 37.3 3.2 32 171-202 19-55 (188)
55 2pjq_A Uncharacterized protein 49.4 18 0.00062 36.7 5.4 53 147-202 10-67 (231)
56 2cqz_A 177AA long hypothetical 48.1 12 0.0004 36.7 3.6 34 169-202 31-74 (177)
57 2zze_A Alanyl-tRNA synthetase; 47.6 15 0.00052 44.0 5.0 71 613-710 590-668 (752)
58 2ogi_A Hypothetical protein SA 46.6 11 0.00038 37.2 3.2 32 171-202 27-63 (196)
59 1ndd_A NEDD8, protein (ubiquit 42.3 59 0.002 26.0 6.5 62 564-625 2-72 (76)
60 1dm9_A Hypothetical 15.5 KD pr 42.0 18 0.00061 33.9 3.6 25 601-625 36-60 (133)
61 2dqb_A Deoxyguanosinetriphosph 42.0 15 0.00051 40.5 3.5 57 145-201 45-111 (376)
62 1u8s_A Glycine cleavage system 39.0 15 0.00053 35.8 2.8 22 798-819 95-116 (192)
63 3a9j_A Ubiquitin; protein comp 38.6 70 0.0024 25.5 6.4 62 564-625 2-72 (76)
64 2gz4_A Hypothetical protein AT 37.7 20 0.00068 36.3 3.4 34 169-202 54-89 (207)
65 4ejq_A Kinesin-like protein KI 37.7 18 0.0006 34.7 2.9 23 600-622 111-133 (154)
66 1wln_A Afadin; beta sandwich, 35.5 28 0.00097 31.6 3.8 24 600-623 81-104 (120)
67 2paq_A 5'-deoxynucleotidase YF 31.9 28 0.00096 34.8 3.4 35 168-202 29-74 (201)
68 2pie_A E3 ubiquitin-protein li 30.3 46 0.0016 31.0 4.4 25 600-624 76-102 (138)
69 2hek_A Hypothetical protein; p 30.1 25 0.00086 38.6 2.9 33 170-202 50-88 (371)
70 1frr_A Ferredoxin I; electron 30.1 27 0.00091 30.1 2.5 34 565-598 4-38 (95)
71 2huo_A Inositol oxygenase; pro 29.0 53 0.0018 34.7 4.9 52 149-200 77-129 (289)
72 3a4r_A Nfatc2-interacting prot 28.3 1.5E+02 0.0052 24.8 6.9 61 564-624 9-79 (79)
73 1ynb_A Hypothetical protein AF 27.8 64 0.0022 31.6 5.1 34 169-202 37-78 (173)
74 4h87_A Kanadaptin; FHA domain 27.7 35 0.0012 31.7 3.1 23 600-622 95-119 (130)
75 2csw_A Ubiquitin ligase protei 27.3 42 0.0014 31.6 3.6 25 600-624 84-110 (145)
76 1p9k_A ORF, hypothetical prote 27.0 30 0.001 29.1 2.3 23 600-622 47-70 (79)
77 3po8_A RV0020C protein, putati 26.8 25 0.00087 30.7 1.8 22 600-622 66-87 (100)
78 1uel_A HHR23B, UV excision rep 26.3 2.1E+02 0.0073 24.4 7.8 63 564-626 2-76 (95)
79 3u7z_A Putative metal binding 26.3 1.4E+02 0.0048 26.8 6.6 59 565-624 11-97 (101)
80 1c05_A Ribosomal protein S4 de 25.7 48 0.0016 31.9 3.7 22 601-622 78-100 (159)
81 1xx7_A Oxetanocin-like protein 24.9 47 0.0016 32.8 3.6 34 169-202 36-79 (184)
82 3c8y_A Iron hydrogenase 1; dit 24.7 44 0.0015 38.6 3.8 55 567-621 3-73 (574)
83 1yx5_B Ubiquitin; proteasome, 24.6 1.6E+02 0.0054 25.2 6.6 63 564-626 2-73 (98)
84 2vqe_D 30S ribosomal protein S 24.3 49 0.0017 33.4 3.6 23 601-623 126-149 (209)
85 3gw7_A Uncharacterized protein 23.8 38 0.0013 34.9 2.7 32 172-203 27-63 (239)
86 3tm8_A BD1817, uncharacterized 23.8 43 0.0015 35.7 3.3 35 167-201 162-206 (328)
87 2ztg_A Alanyl-tRNA synthetase; 23.5 88 0.003 37.4 6.0 68 615-710 579-655 (739)
88 4egx_A Kinesin-like protein KI 23.4 47 0.0016 32.8 3.2 22 601-622 142-163 (184)
89 1uwm_A Ferredoxin VI, FDVI; el 23.3 54 0.0018 28.8 3.3 34 565-598 3-39 (106)
90 2faz_A Ubiquitin-like containi 22.8 1.7E+02 0.006 23.5 6.2 62 564-625 4-76 (78)
91 2xt9_B Putative signal transdu 22.7 37 0.0013 30.5 2.1 22 600-622 74-95 (115)
92 2dzi_A Ubiquitin-like protein 22.5 96 0.0033 25.2 4.5 61 564-624 9-78 (81)
93 3lxf_A Ferredoxin; iron, iron- 22.1 67 0.0023 28.4 3.7 36 564-599 2-40 (104)
94 1xlq_A Putidaredoxin, PDX; [2F 22.1 58 0.002 28.6 3.3 34 565-598 3-39 (106)
95 2jqj_A DNA damage response pro 21.8 37 0.0013 32.1 2.0 24 600-623 88-112 (151)
96 2bt6_A Adrenodoxin 1; rutheniu 21.7 50 0.0017 29.2 2.8 35 565-599 9-47 (108)
97 2wyq_A HHR23A, UV excision rep 21.4 2.1E+02 0.0071 23.4 6.5 63 564-626 7-81 (85)
98 1gxc_A CHK2, CDS1, serine/thre 21.2 39 0.0013 31.9 2.1 25 600-624 104-130 (149)
99 1awd_A Ferredoxin; electron tr 21.2 54 0.0018 28.2 2.8 34 565-598 3-37 (94)
100 3phx_B Ubiquitin-like protein 21.1 2.3E+02 0.0078 22.9 6.6 61 564-624 6-75 (79)
101 3hx1_A SLR1951 protein; P74513 21.0 35 0.0012 31.6 1.7 22 600-622 83-104 (131)
102 3k9o_B Ubiquitin, UBB+1; E2-25 20.3 2.4E+02 0.0081 23.7 6.8 62 564-625 3-73 (96)
103 3mtn_B UBA80, ubcep1, ubiquiti 20.0 2.2E+02 0.0076 23.1 6.4 62 564-625 5-75 (85)
No 1
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=100.00 E-value=1.2e-101 Score=857.29 Aligned_cols=376 Identities=38% Similarity=0.618 Sum_probs=308.6
Q ss_pred CChHHHHHhHhhhhcCCChhhHHHHHHHHHHHHHhhcCCccccCCcccchHHHHHHHHHHcCCCHHHHHHHhhccccccC
Q 003428 125 DSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDT 204 (820)
Q Consensus 125 ~~~~~~~~~l~~~~~~~~~~~~~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILaelglD~~tIiAALLHDvVEDT 204 (820)
++.+.+.+.+. .|+++.+.+++.+|+.||.++|.||+|++|+|||.||++||.||+++|+|.++++||||||+||||
T Consensus 7 ~~~~~l~~~~~---~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~~i~AALLHDvvEDt 83 (393)
T 1vj7_A 7 LTGEEVVALAA---KYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDT 83 (393)
T ss_dssp CCHHHHHHHHH---HHSCHHHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHS
T ss_pred CCHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHhhhHHhcC
Confidence 44444444332 689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhChHHHHHHhhhcccccccccccccCCcchhhhhHHHHHHHHHhccCCceEEeeeehhhhhccccccCC
Q 003428 205 NVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHM 284 (820)
Q Consensus 205 ~~~T~eeI~~~FG~~Va~LV~glTkvs~l~~~~~~~~~~~~~~~qae~~RkmLLam~~D~RViLIKLADRLhNMRtL~~~ 284 (820)
+ +|.++|++.||++|+.||+||||++++.. . +....|+|++|||||||++|+||++|||||||||||++..+
T Consensus 84 ~-~t~e~I~~~FG~~Va~lV~gvTk~~~~~~---~----~~~~~qae~~Rkmllam~~D~RvvlIKLADRlhNmRtl~~~ 155 (393)
T 1vj7_A 84 D-ITLDNIEFDFGKDVRDIVDGVTKLGKVEY---K----SHEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHL 155 (393)
T ss_dssp S-CCHHHHHHHHCHHHHHHHHHHHHHC---------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC--
T ss_pred C-CCHHHHHHHhCHHHHHHHHHHHhcccCCc---c----cHHHHHHHHHHHHHHhhcCCcceeeeeHHHHHHccCchhhC
Confidence 9 89999999999999999999999887541 1 12456899999999999999999999999999999999999
Q ss_pred CCcchhhHHHHHHHHHHHHHHHhCHHHHHHHHhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 003428 285 PPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFL 364 (820)
Q Consensus 285 p~~kq~~iA~ETl~iYaPLA~RLGl~~iK~ELEDLsf~~l~P~~y~~i~~~l~~~r~~~e~~i~~~~~~L~~~L~~~~~l 364 (820)
|+++|+++|+||++|||||||||||++||||||||||+|++|++|+.|.++|.+.+.+|+.+++.+...|++.|.+.
T Consensus 156 ~~ek~~~iA~Etl~iyaPLA~rLGi~~ik~ELEdl~f~~l~p~~y~~i~~~l~~~r~~r~~~i~~i~~~l~~~L~~~--- 232 (393)
T 1vj7_A 156 RKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQ--- 232 (393)
T ss_dssp ----HHHHHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred ChHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred ccccceeEEEEEecChHHHHHHHHhcCCCCCccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccccccccc
Q 003428 365 DLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMK 444 (820)
Q Consensus 365 ~~~~i~~~V~~R~K~~ySI~~Km~rk~~~~~eI~Di~giRIIv~~~~c~~~~~~~~~~~dCY~vlg~Ih~~~~pip~r~k 444 (820)
|+++.|+||+|++||||+||+||+.+|++|+|++|||||+++ ..|||.++|+||+.|+|+|++||
T Consensus 233 ---gi~~~v~~R~K~~~Si~~Km~rk~~~~~~i~Di~giRIi~~~------------~~dcy~vl~~i~~~~~~~~~~~k 297 (393)
T 1vj7_A 233 ---GLFGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMET------------QSDVYAMVGYIHELWRPMPGRFK 297 (393)
T ss_dssp ---TCCCEEEECCCCHHHHHHHHHHHGGGCCTTGGGCEEEEEESS------------HHHHHHHHHHHHHHSCBCTTCCE
T ss_pred ---CCceEEEEEeCChHHHHHHHHHhCCChhhhcccceEEEEECC------------HHHHHHHHHHHHhcCCCCCCccc
Confidence 788999999999999999999999999999999999999764 57999999999999999999999
Q ss_pred ccccCCCCCCcceeEEEEeccCCCCceeEEEEEechHHHHHHHHHHHhhccCcccccccccCCCCCCCCCCCcccccchh
Q 003428 445 DYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNA 524 (820)
Q Consensus 445 DyIa~PK~NGYqSLHttV~~~~~~~~~~vEVQIRT~~Mh~~AE~G~aahwkyK~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (820)
|||++||+||||||||+|.++ .+ +|||||||..||.|||+||++||+||++.. . .. ...
T Consensus 298 DyIa~PK~nGYqSlH~~v~~p---~~-~vEIQIRT~~mh~~Ae~g~aah~~YK~~~~-----------~----~~--~~~ 356 (393)
T 1vj7_A 298 DYIAAPKANGYQSIHTTVYGP---KG-PIEIQIRTKEMHQVAEYGVAAHWAYKKGVR-----------G----KV--NQA 356 (393)
T ss_dssp ETTTSCCTTCCCCEEEEEECS---SS-EEEEEEEEHHHHHHHHHTTCC--------------------------------
T ss_pred ccccCCCcCCcceeEEEEEeC---Cc-eEEEEEecHHHHHHHHhhHHHHhccccCCC-----------c----cc--chh
Confidence 999999999999999999864 35 999999999999999999999999997421 0 00 011
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCchhhh
Q 003428 525 NIALRISWLNAIREWQEEFVGNMTSREFV 553 (820)
Q Consensus 525 ~~~~~~~wl~~l~e~~~~~~~~~~~~ef~ 553 (820)
.+.++++||++|++||++.. ++.||+
T Consensus 357 ~~~~~~~wl~~ll~~~~~~~---~~~ef~ 382 (393)
T 1vj7_A 357 EQKVGMNWIKELVELQDASN---GDAVDF 382 (393)
T ss_dssp ------CHHHHHHHC--------------
T ss_pred hhHHHHHHHHHHHHHHhcCC---CcHHHH
Confidence 12346799999999998852 356775
No 2
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans}
Probab=100.00 E-value=1.2e-41 Score=357.07 Aligned_cols=169 Identities=21% Similarity=0.205 Sum_probs=126.8
Q ss_pred HHHHHHHHHhCHHHHHHHHhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeEEEEEe
Q 003428 298 QVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTEIRSVC 377 (820)
Q Consensus 298 ~iYaPLA~RLGl~~iK~ELEDLsf~~l~P~~y~~i~~~l~~~r~~~e~~i~~~~~~L~~~L~~~~~l~~~~i~~~V~~R~ 377 (820)
.||||||+||||+++|.|+|++.+.|. ..+.+++.+|+.++.+. .... +...+ ..|+||+
T Consensus 19 ~i~apla~~lg~~~~~~~~~~~~~~Y~--~a~~el~~kl~~l~~e~-----------~~~~------~~~~i-~~V~~Rv 78 (255)
T 3l9d_A 19 SHMASMTGGQQMGRGSMNWEEFLDPYI--QAVGELKIKFRGIRKQF-----------RKQK------RHSPI-EFVTGRV 78 (255)
T ss_dssp ----------------CCHHHHTHHHH--HHHHHHHHHHHHHHHHH-----------HHTT------SCCSC-CEEEEEE
T ss_pred cchHhhhhHhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-----------HHhh------ccCCc-ceEEeEE
Confidence 699999999999999999999988765 57888877776543322 1111 11122 3799999
Q ss_pred cChHHHHHHHHhcCCCCC----ccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhcccccccccccccccCCCCC
Q 003428 378 KEPYSIYKAVLKSRGSIN----EVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPN 453 (820)
Q Consensus 378 K~~ySI~~Km~rk~~~~~----eI~Di~giRIIv~~~~c~~~~~~~~~~~dCY~vlg~Ih~~~~pip~r~kDyIa~PK~N 453 (820)
|+++|||+||.|++.+++ +|+|++|||||+.. ..|||.++++||+.|.|.|.++||||++||+|
T Consensus 79 Ks~~SI~~Km~Rk~~~~~~~~~~I~Di~GiRII~~~------------~~D~y~v~~~I~~~~~~~~~~~KDYIa~PK~n 146 (255)
T 3l9d_A 79 KPIESIKEKMVLRGIKKENLTQDMQDIAGLRIMVQF------------VDDVNDVLELLRQRKDMKVIQERDYINNLKPS 146 (255)
T ss_dssp CCHHHHHHHHHHHTCCGGGHHHHCSCSEEEEEEESS------------TTHHHHHHHHHHTCSSSEEEEEEEESCC-CCC
T ss_pred cCHHHHHHHHHhcCCCccchhhhccccceEEEEEeC------------HHHHHHHHHHHHhcCCCceeeeeccccCCCCC
Confidence 999999999999999987 79999999999764 36999999999999999999999999999999
Q ss_pred CcceeEEEEe-c---cCCCCceeEEEEEechHHHHHHHHHHHhhccCcc
Q 003428 454 GYQSLHTTLI-P---FLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRV 498 (820)
Q Consensus 454 GYqSLHttV~-~---~~~~~~~~vEVQIRT~~Mh~~AE~G~aahwkyK~ 498 (820)
||||||++|. | ..++.+.+|||||||..||.|||+||++||||++
T Consensus 147 GYrSlH~iv~~p~~~~~g~~~~~vEIQIRT~~Mh~WAeieH~~~YK~~~ 195 (255)
T 3l9d_A 147 GYRSYHVIVEYPVDTISGQRIIMAEIQIRTLAMNFWATIEHSLNYKYHG 195 (255)
T ss_dssp SCCEEEEEEEEEEEETTEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHTT
T ss_pred CceeEEEEEEcccccccCCCceEEEEEECCHHHHHHHHHHHHHhcCCCC
Confidence 9999999995 2 1234568999999999999999999999999985
No 3
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8
Probab=100.00 E-value=2.7e-36 Score=312.93 Aligned_cols=163 Identities=18% Similarity=0.191 Sum_probs=128.2
Q ss_pred eEEEEEecChHHHHHHHHhcCCCCC----ccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccccccccccc
Q 003428 371 TEIRSVCKEPYSIYKAVLKSRGSIN----EVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDY 446 (820)
Q Consensus 371 ~~V~~R~K~~ySI~~Km~rk~~~~~----eI~Di~giRIIv~~~~c~~~~~~~~~~~dCY~vlg~Ih~~~~pip~r~kDy 446 (820)
..|.||+|++||||+||.|++.+++ +|+|++|||||++. ..|||.++++||+.|.|.|.++|||
T Consensus 43 ~~v~~RvK~~~Si~~K~~rk~~~~~~~~~~i~Di~GiRIi~~~------------~~d~y~v~~~i~~~~~~~~~~~kDy 110 (226)
T 2be3_A 43 EFVTGRVKPIESIKEKMARRGITYATLEHDLQDIAGLRVMVQF------------VDDVKEVVDILHKRQDMRIIQERDY 110 (226)
T ss_dssp EEEEEEECCHHHHHHHHHHHTCCTTTHHHHCTTSEEEEEEESC------------GGGHHHHHHHHHTCSSEEEEEEEET
T ss_pred ceEEeeCCCHHHHHHHHHhhCCCcccchhhccccceEEEEEcC------------HHHHHHHHHHHHhccCCceeeecch
Confidence 4799999999999999999999998 99999999999764 4699999999999999999999999
Q ss_pred ccCCCCCCcceeEEEEe-cc---CCCCceeEEEEEechHHHHHHHHHHHhhccCcccccccccCCCCCCCCCCCcccccc
Q 003428 447 IATPKPNGYQSLHTTLI-PF---LYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLN 522 (820)
Q Consensus 447 Ia~PK~NGYqSLHttV~-~~---~~~~~~~vEVQIRT~~Mh~~AE~G~aahwkyK~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (820)
|++||+|||||||++|. |. .++.+.++||||||..||.|||+||++||||++... . .-...+.
T Consensus 111 I~~PK~nGYrSlH~~v~~p~~~~~g~~~~~vEIQIRT~~m~~wAe~eh~~~YK~~~~~~------------~-~~~~~l~ 177 (226)
T 2be3_A 111 ITHRKASGYRSYHVVVEYTVDTINGAKTILAEIQIRTLAMNFWATIEHSLNYKYQGDFP------------D-EIKKRLE 177 (226)
T ss_dssp TTTCCTTSCCCEEEEEEEEECCTTCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCC------------H-HHHHHHH
T ss_pred hhcCCCCCceEEEEEEEcccccccCCCCcEEEEEEeeHHHHHHHHHhHHHHcCCcCCCc------------H-HHHHHHH
Confidence 99999999999999994 32 245678999999999999999999999999986310 0 0000111
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcCCCchhhhhhhcccccC
Q 003428 523 NANIALRISWLNAIREWQEEFVGNMTSREFVDTITRDLLG 562 (820)
Q Consensus 523 ~~~~~~~~~wl~~l~e~~~~~~~~~~~~ef~~~~k~dL~~ 562 (820)
.. -.....|.+++.+|+++.. ++.+|++.++.+|++
T Consensus 178 ~~-a~~~~~~d~~m~~i~~~i~---~~~~~~~~~~~~~~~ 213 (226)
T 2be3_A 178 IT-ARIAHQLDEEMGEIRDDIQ---EAQALFDPLSRKLND 213 (226)
T ss_dssp HH-HHHHHHHHHHHHTTHHHHH---HHHHHCCC-------
T ss_pred HH-HHHHHHHHHHHHHHHHHHh---hhHHHHHHhhHHHhh
Confidence 00 0123579999999998874 377999999999874
No 4
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=6.7e-34 Score=285.35 Aligned_cols=163 Identities=26% Similarity=0.376 Sum_probs=138.0
Q ss_pred hhhHHHHHHHHHHHHHhhcCCccc--cCCcccchHHHHHHHHH-HcCC-CHHHHHHHhhccccccCCCCCHHHHHHHhCh
Q 003428 143 PNELELVRRALMLAFEAHDGQKRR--SGEPFIIHPVEVARILG-ELEL-DWESIAAGLLHDTVEDTNVVTFERIEEEFGA 218 (820)
Q Consensus 143 ~~~~~~l~~A~~~A~~aH~gQ~Rk--sGePYi~Hpl~VA~ILa-elgl-D~~tIiAALLHDvVEDT~~~T~eeI~~~FG~ 218 (820)
..|.+++.+|+.||.++|.||+|+ +|+|||.||++||.||+ ++|+ |.++++||||||+||||. +|.++|++.||+
T Consensus 3 ~~d~~~l~~A~~~A~~~H~gQ~rk~~~G~pyi~Hpl~VA~ila~~l~~~D~~~i~AAlLHDvvEDt~-~t~e~i~~~FG~ 81 (179)
T 3nqw_A 3 TYPSAKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDVVEDTD-ASFEDVEKLFGP 81 (179)
T ss_dssp CCCCHHHHHHHHHHHHHSTTCBCSSSSCCBTHHHHHHHHHHHHTTTCCCCHHHHHHHHTTTHHHHSS-CCHHHHHHHHCH
T ss_pred cccHHHHHHHHHHHHHHhccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHhcCC-CCHHHHHHHHCH
Confidence 346788999999999999999998 69999999999999999 8998 999999999999999999 899999999999
Q ss_pred HHHHHHhhhcccccccccccccCCcchhhhhHHHHHHHHHhccCCceEEeeeehhhhhccccccCCCCcc-hhhHHHHHH
Q 003428 219 TVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHK-QSSIATETL 297 (820)
Q Consensus 219 ~Va~LV~glTkvs~l~~~~~~~~~~~~~~~qae~~RkmLLam~~D~RViLIKLADRLhNMRtL~~~p~~k-q~~iA~ETl 297 (820)
+|+.||+|||++..++... ....+.+++|+ .|+||++||||||+||||++..+|+++ ...-+++.+
T Consensus 82 ~Va~lV~gvtk~~~~~~~~-------~~~~q~e~~r~------~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~r~~~Y~ 148 (179)
T 3nqw_A 82 DVCGLVREVTDDKSLEKQE-------RKRLQIENAAK------SSCRAKLIKLADKLDNLRDLQVNTPTGWTQERRDQYF 148 (179)
T ss_dssp HHHHHHHHTCCCTTSCHHH-------HHHHHHHSSTT------SCHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhccccCHHH-------HHHHHHHHHHh------CCHHHHHHHHHHHHHHHHHHhhCCcccccHHHHHHHH
Confidence 9999999999987754211 23446677764 799999999999999999999988765 345577899
Q ss_pred HHHHHHHHHh--CHHHHHHHHhcc
Q 003428 298 QVFAPLAKLL--GMYQIKSELENL 319 (820)
Q Consensus 298 ~iYaPLA~RL--Gl~~iK~ELEDL 319 (820)
..|.++++.| |=-.+..+|.++
T Consensus 149 ~~~~~v~~~l~~~n~~l~~~~~~~ 172 (179)
T 3nqw_A 149 VWAKKVVDNLRGTNANLELKLDEI 172 (179)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHH
Confidence 9999999887 333444555544
No 5
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=99.97 E-value=3.1e-32 Score=272.98 Aligned_cols=131 Identities=40% Similarity=0.578 Sum_probs=115.4
Q ss_pred hhHHHHHHHHHHHHHhhcCCcccc--CCcccchHHHHHHHH-HHcCC-CHHHHHHHhhccccccCCCCCHHHHHHHhChH
Q 003428 144 NELELVRRALMLAFEAHDGQKRRS--GEPFIIHPVEVARIL-GELEL-DWESIAAGLLHDTVEDTNVVTFERIEEEFGAT 219 (820)
Q Consensus 144 ~~~~~l~~A~~~A~~aH~gQ~Rks--GePYi~Hpl~VA~IL-aelgl-D~~tIiAALLHDvVEDT~~~T~eeI~~~FG~~ 219 (820)
.|.+++.+|+.||.++|.||+|++ |+|||.||++||.|| .++|+ |.++++||||||+||||+ +|.++|++.||++
T Consensus 2 ~d~~~l~~A~~~A~~aH~gQ~rk~~~G~PYi~Hpl~VA~il~~~~~~~d~~~i~AALLHDvvEDt~-~t~e~i~~~FG~~ 80 (178)
T 3nr1_A 2 SEAAQLLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDTD-TTLDEVELHFGAQ 80 (178)
T ss_dssp CHHHHHHHHHHHHHHHTTTCBCSSTTCCBTTHHHHHHHHHHHHTSCCCCHHHHHHHHHTTHHHHSS-CCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHhcCC-CCHHHHHHHHCHH
Confidence 367889999999999999999987 999999999999999 58996 999999999999999999 8999999999999
Q ss_pred HHHHHhhhcccccccccccccCCcchhhhhHHHHHHHHHhccCCceEEeeeehhhhhccccccCCCCcc
Q 003428 220 VRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHK 288 (820)
Q Consensus 220 Va~LV~glTkvs~l~~~~~~~~~~~~~~~qae~~RkmLLam~~D~RViLIKLADRLhNMRtL~~~p~~k 288 (820)
|+.||+||||+..+.... ....+.+++| ..|+||++|||||||||||++..++++.
T Consensus 81 Va~lV~gvTk~~~~~~~~-------~~~~q~e~~~------~~d~rvvlIKLADRl~NmR~l~~~~~~~ 136 (178)
T 3nr1_A 81 VRRLVEEVTDDKTLPKLE-------RKRLQVEQAP------HSSPGAKLVKLADKLYNLRDLNRCTPEG 136 (178)
T ss_dssp HHHHHHHTCCCTTSCHHH-------HHHHHHHHGG------GSCHHHHHHHHHHHHHHHHHHHHCCCTT
T ss_pred HHHHHHHHHhccccchhh-------HHHHHHHHHH------hCCchhHHHHHHHHHHHHHHhhhCCccc
Confidence 999999999987654211 1234556554 5899999999999999999999888765
No 6
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=99.87 E-value=5.2e-23 Score=179.51 Aligned_cols=70 Identities=43% Similarity=0.842 Sum_probs=63.5
Q ss_pred cccCCCeeeecCCCceEecCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEeccCC
Q 003428 559 DLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNAL 628 (820)
Q Consensus 559 dL~~~~I~VftP~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l~~~L~~gd~VeIlT~~~~ 628 (820)
|||+++||||||+|++++||+|+||+||||+||+++|++|++|+|||++|+|+++|++||+|||+|+++.
T Consensus 2 ~l~~~~i~v~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkVNG~~v~L~~~L~~gd~VeIit~~~~ 71 (78)
T 3hvz_A 2 DLAPEEVFVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKVDGRIVPIDYKVKTGEIIDVLTTKEL 71 (78)
T ss_dssp ----CEEEEECTTSCEEEEETTCBHHHHHHHHCHHHHHTEEEEEETTEEECTTCBCCTTCBEEEEECC--
T ss_pred CCcCceEEEECCCCCEEEecCCCCHHHHHHHhhhhhhcceEEEEECCEEcCCCcccCCCCEEEEEccCcc
Confidence 7899999999999999999999999999999999999999999999999999999999999999998754
No 7
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=99.70 E-value=1.8e-17 Score=171.38 Aligned_cols=122 Identities=15% Similarity=0.185 Sum_probs=109.3
Q ss_pred CeeeecCCCceEecCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEeccCCCCCCcCCCChhHHHH
Q 003428 564 RVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEH 643 (820)
Q Consensus 564 ~I~VftP~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l~~~L~~gd~VeIlT~~~~~~~~~~~p~~~WL~~ 643 (820)
+|.|++|+|+++++|+|+|++|||+.||+.++++|++|+|||++++|+++|++|+.|||+|.++.
T Consensus 1 ~i~I~~p~G~~~~~~~g~T~~dia~~i~~~l~~~~vaakvNg~l~dL~~~l~~~~~ve~it~~~~--------------- 65 (224)
T 1tke_A 1 MPVITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAKDE--------------- 65 (224)
T ss_dssp CCEEECTTSCEEECSSCBCHHHHHHHHCHHHHHHCCEEEETTEEEETTCCBCSCEEEEEECTTSH---------------
T ss_pred CeEEEeCCCCEEEecCCCCHHHHHHHHhhhcccceEEEEECCEEeccceEcCCCCeEEEEecCch---------------
Confidence 36799999999999999999999999999999999999999999999999999999999998653
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC---ccccccccccC----CchhHHHHHHHHhhcCC
Q 003428 644 AKTRSARHKIMKFLREQAALSASEITADTVGDFVADSGEES---EVEDLSDGSKQ----DKPLWEKILMNVVQMSS 712 (820)
Q Consensus 644 v~T~~Ar~~ir~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~fy~~i~~----~~~~~~~i~~~~~~~~~ 712 (820)
.|+..+|| +++|++..||.+.|++.++.. .+++||++++. ++.++++|++.|.+.-+
T Consensus 66 ----~g~~~~~H--------S~~HlL~~A~~~~~~~~~~~~g~~~~~g~y~d~~~~~~~t~edl~~IE~~m~~iI~ 129 (224)
T 1tke_A 66 ----EGLEIIRH--------SCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129 (224)
T ss_dssp ----HHHHHHHH--------HHHHHHHHHHHHHSTTCEECCCCEETTEEEEEEECSSCCCHHHHHHHHHHHHHHHT
T ss_pred ----hHHHHHHH--------HHHHHHHHHHHHHCCCcEEEECCccCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 68899999 999999999999998654332 57899999964 67789999999988733
No 8
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=99.46 E-value=6.5e-14 Score=125.11 Aligned_cols=65 Identities=28% Similarity=0.442 Sum_probs=59.9
Q ss_pred CCeeeec-CCCce------Eec-CCCCcHhHHHhhcccccccceEEEEE-------CCEecCCCccCCCCCeEEEEeccC
Q 003428 563 SRVFVFT-PRGEI------KNL-PKGATVVDYAYMIHTEIGNKMVAAKV-------NGNLVSPTHVLANAEVVEIITYNA 627 (820)
Q Consensus 563 ~~I~Vft-P~G~i------~~l-P~GaT~lDfAy~Iht~lg~~~~~akV-------NG~~v~l~~~L~~gd~VeIlT~~~ 627 (820)
+.|.||| |+|+. +.| |.|+|+.||||+||+++|+.+..|.| ||+.|+++|+|++||+|+|++.++
T Consensus 10 ~lIrVYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv~~~~ 89 (93)
T 2eki_A 10 KLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKKSG 89 (93)
T ss_dssp CEEEEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSEEECSSCCCCSSEEECEEECCS
T ss_pred CeEEEEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhccEEEEecccccCCCEECCCCcEecCCCEEEEEeCCC
Confidence 4688999 88864 889 99999999999999999999999887 999999999999999999999764
No 9
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=99.38 E-value=5.9e-13 Score=113.42 Aligned_cols=65 Identities=46% Similarity=0.843 Sum_probs=62.3
Q ss_pred CeeeecCCCceEecCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEeccCC
Q 003428 564 RVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNAL 628 (820)
Q Consensus 564 ~I~VftP~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l~~~L~~gd~VeIlT~~~~ 628 (820)
+|+|++|+|+.+++|+|+|+.|+|+.+|++++..+++|+|||++++++++|++||.|||+|..+.
T Consensus 2 ~i~i~~p~g~~~~~~~g~T~~dla~~i~~~l~~~~vaa~vNg~lvdl~~~L~~~~~Veivt~~~~ 66 (73)
T 2kmm_A 2 EVMVFTPKGEIKRLPQGATALDFAYSLHSDLGDHCIGAKVNHKLVPLSYVLNSGDQVEVLSSKSL 66 (73)
T ss_dssp CEEEECTTCCEEEECTTCBHHHHHHHHCSHHHHTEEEEEETTEECCTTCBCCSSSBEEEEECCCC
T ss_pred eEEEEcCCCCEEEcCCCCcHHHHHHHHhhccccceEEEEECCEEeCCCcCcCCCCEEEEEECCCC
Confidence 47899999999999999999999999999999999999999999999999999999999998754
No 10
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=99.37 E-value=9.2e-14 Score=123.21 Aligned_cols=66 Identities=20% Similarity=0.218 Sum_probs=63.2
Q ss_pred CCeeeecCCCceEecCC-CCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEeccCC
Q 003428 563 SRVFVFTPRGEIKNLPK-GATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNAL 628 (820)
Q Consensus 563 ~~I~VftP~G~i~~lP~-GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l~~~L~~gd~VeIlT~~~~ 628 (820)
.+|.|+.|+|+++++|. |+|++|||+.||+.+++++++|+|||++++|+++|++|+.|||+|.+++
T Consensus 10 ~~i~I~lpdG~~~~~~~~~~T~~dia~~i~~~l~~~~vaakvNg~l~dL~~~l~~d~~ve~vt~~~~ 76 (88)
T 1wwt_A 10 KPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLELLKFEDE 76 (88)
T ss_dssp CEEEEECTTSCEEEEETTTCCHHHHHHHSSTTTGGGCCCEEESSSEECSSSCCCSSEEEEECSSCCS
T ss_pred CCEEEEECCCCEEEcccCCCCHHHHHHHhhhccccceEEEEECCEEECCCcCcCCCCEEEEEeCCCH
Confidence 56889999999999998 9999999999999999999999999999999999999999999998765
No 11
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.29 E-value=2.3e-12 Score=152.11 Aligned_cols=119 Identities=15% Similarity=0.191 Sum_probs=108.4
Q ss_pred eeeecCCCceEecCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEeccCCCCCCcCCCChhHHHHh
Q 003428 565 VFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHA 644 (820)
Q Consensus 565 I~VftP~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l~~~L~~gd~VeIlT~~~~~~~~~~~p~~~WL~~v 644 (820)
|.|..|||.+++++.|.||.|+|.+|.+.++..+++|+|||++++|+++|..+..|+++|.+++
T Consensus 2 ~~~~~~d~~~~~~~~~~t~~~~a~~i~~~~~~~~~~~~vng~~~dl~~~l~~d~~~~~~~~~~~---------------- 65 (642)
T 1qf6_A 2 PVITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAKDE---------------- 65 (642)
T ss_dssp CEEECTTSCEEECSSCBCHHHHHHHHCHHHHHHCSEEEETTEEEETTSCBCSCEECCEECTTSH----------------
T ss_pred ceEEcCCCCeEEecCCCCHHHHHHHhchhhhhheEEEEECCEEeccccccCCCceEEEeecCcH----------------
Confidence 6789999999999999999999999999999999999999999999999999999999998754
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC---ccccccccccC----CchhHHHHHHHHhhc
Q 003428 645 KTRSARHKIMKFLREQAALSASEITADTVGDFVADSGEES---EVEDLSDGSKQ----DKPLWEKILMNVVQM 710 (820)
Q Consensus 645 ~T~~Ar~~ir~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~fy~~i~~----~~~~~~~i~~~~~~~ 710 (820)
.|+..+|| +++|+++.||.+.|++.++.. ++++||||++. ++.++++|++.|.+.
T Consensus 66 ---~~~~~~~H--------Sa~HlL~~Al~~~~~~~~~~~G~~i~~gfy~Df~~~~~~t~edl~~IE~~m~~i 127 (642)
T 1qf6_A 66 ---EGLEIIRH--------SCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHEL 127 (642)
T ss_dssp ---HHHHHHHH--------HHHHHHHHHHHHHCTTCEECCCCEETTEEEEEEECSSCCCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHH--------HHHHHHHHHHHHhCCCcEEEECCccCCeeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 79999999 999999999999998754432 66899999964 677899999999877
No 12
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.18 E-value=1.4e-11 Score=145.46 Aligned_cols=120 Identities=23% Similarity=0.244 Sum_probs=108.7
Q ss_pred CeeeecCCCceEecCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEeccCCCCCCcCCCChhHHHH
Q 003428 564 RVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEH 643 (820)
Q Consensus 564 ~I~VftP~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l~~~L~~gd~VeIlT~~~~~~~~~~~p~~~WL~~ 643 (820)
+|.|..|||+++++|.|.|+.|+|-.|...++..+++|+|||++++|+++|..+..|+++|.+++
T Consensus 3 ~~~i~~~dg~~~~~~~g~t~~~ia~~~~~~~~~~~v~~~vng~~~dl~~~l~~d~~v~~~~~~~~--------------- 67 (645)
T 1nyr_A 3 QINIQFPDGNKKAFDKGTTTEDIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIEIVTPGSE--------------- 67 (645)
T ss_dssp -CBBCCTTSCCCBCCTTCCHHHHHHTTCHHHHHHCCEEEETTEEECTTSCCCSCBCCCEECTTSH---------------
T ss_pred ceEEEeCCCCEEEecCCCCHHHHHHHhhhhcccCeEEEEECCEEEeCCcccCCCCeEEEeeccch---------------
Confidence 67799999999999999999999999999999999999999999999999999999999998653
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC---ccccccccccC----CchhHHHHHHHHhhc
Q 003428 644 AKTRSARHKIMKFLREQAALSASEITADTVGDFVADSGEES---EVEDLSDGSKQ----DKPLWEKILMNVVQM 710 (820)
Q Consensus 644 v~T~~Ar~~ir~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~fy~~i~~----~~~~~~~i~~~~~~~ 710 (820)
.|+..++| +++|++..||.+.|++.++.. .+++||||++. ++.++++|++.|.+.
T Consensus 68 ----~g~~~~~H--------Sa~HlL~~A~~~~~~~~~~~~g~~~~~g~~~Df~~~~~~t~edl~~IE~~m~~i 129 (645)
T 1nyr_A 68 ----EALEVLRH--------STAHLMAHAIKRLYGNVKFGVGPVIEGGFYYDFDIDQNISSDDFEQIEKTMKQI 129 (645)
T ss_dssp ----HHHHHHHH--------HHHHHHHHHHHHHSSSCEECCCCEETTEEEEEEECSSCCCSTTHHHHHHHHHHH
T ss_pred ----hHHHHHHH--------HHHHHHHHHHHHHcCCcEEEECCccCCceEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 78999999 999999999999998765544 57999999964 677899999999877
No 13
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.94 E-value=2.3e-10 Score=127.78 Aligned_cols=64 Identities=23% Similarity=0.360 Sum_probs=60.8
Q ss_pred CCeeeec---------CCC----ceEecCCCCcHhHHHhhcccccccceEEE--EECCEecCCCccCCCCCeEEEEecc
Q 003428 563 SRVFVFT---------PRG----EIKNLPKGATVVDYAYMIHTEIGNKMVAA--KVNGNLVSPTHVLANAEVVEIITYN 626 (820)
Q Consensus 563 ~~I~Vft---------P~G----~i~~lP~GaT~lDfAy~Iht~lg~~~~~a--kVNG~~v~l~~~L~~gd~VeIlT~~ 626 (820)
+.|+||| |+| +.+.||+|+||.||||.||+++|+.|++| ++||+.|+++|+|++||+|+|+|++
T Consensus 318 ~li~vft~~~~~~~~~~~g~~~~~~~~l~~G~t~~d~a~~iH~d~~~~f~~a~~~~~~~~~g~~~~l~dgDvv~i~~~~ 396 (397)
T 1wxq_A 318 KLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFLYAINARTKRRVGEDYELQFNDIVKIVSVT 396 (397)
T ss_dssp CEEEEEEESCC-----CCSCSSCCCEEEETTCCHHHHHHHHCHHHHHTEEEEEETTTCSBCCTTCCCCTTEEEEEEEC-
T ss_pred CCeEEEeecccccccCCcCcccceeEEeCCCCCHHHHHHHHhHHHHhhhhhhHHhcCCEEcCCCccccCCCEEEEEeCC
Confidence 5789999 999 99999999999999999999999999999 8899999999999999999999974
No 14
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.0011 Score=73.44 Aligned_cols=61 Identities=30% Similarity=0.535 Sum_probs=49.8
Q ss_pred Ceeeec-CCCceEe------cCCC-CcHhHHHhhcccccccceEEEEE-------CCEecCCCccCCCCCeEEEEe
Q 003428 564 RVFVFT-PRGEIKN------LPKG-ATVVDYAYMIHTEIGNKMVAAKV-------NGNLVSPTHVLANAEVVEIIT 624 (820)
Q Consensus 564 ~I~Vft-P~G~i~~------lP~G-aT~lDfAy~Iht~lg~~~~~akV-------NG~~v~l~~~L~~gd~VeIlT 624 (820)
-|.+|| +.|++.. +++| ||+.|||..||+++......|.| +|+.+..+|.|++||+|+|++
T Consensus 300 Li~~fT~g~~E~rawt~~~~~~a~~at~~D~a~~ih~d~~~~F~~a~v~Gs~~K~~~r~eGkdyvv~DGDVi~iv~ 375 (376)
T 4a9a_A 300 LVRIYTKPKGQIPDFTDPVVLRSDRCSVKDFCNQIHKSLVDDFRNALVYGSSVKHQPQYVGLSHILEDEDVVTILK 375 (376)
T ss_dssp CEEEEECCSSSCCCSSSCEEEBTTBCBHHHHHHHHCGGGGGGEEEEEEESTTSSSSSEEECTTCBCCTTCEEEEEE
T ss_pred CcEEEeCCCCCcCCCCccccccCCCCcHHHHHHHHHHHHHHhhhHhhhcCcccCCCCCccCCCcEEcCCCEEEEEe
Confidence 456776 3455543 3455 99999999999999999998876 568899999999999999997
No 15
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=96.87 E-value=0.0011 Score=55.25 Aligned_cols=53 Identities=13% Similarity=0.234 Sum_probs=45.1
Q ss_pred CCceEecCCCCcHhHHHhhcccccccceEEEEECCEecCC----CccCCCCCeEEEEec
Q 003428 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSP----THVLANAEVVEIITY 625 (820)
Q Consensus 571 ~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l----~~~L~~gd~VeIlT~ 625 (820)
+|+.+++|.|+|+.|+--.+.- ....++.-|||+.++. +++|++||.|+|++.
T Consensus 6 Ng~~~~~~~~~tv~~ll~~l~~--~~~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~~~ 62 (66)
T 1f0z_A 6 NDQAMQCAAGQTVHELLEQLDQ--RQAGAALAINQQIVPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_dssp SSCEECCCTTCCHHHHHHHHTC--CCSSEEEEETTEEECHHHHTTCCCCTTEEECEEES
T ss_pred CCEEEEcCCCCcHHHHHHHcCC--CCCCEEEEECCEECCchhcCCcCCCCCCEEEEEee
Confidence 6889999999999998766643 3456679999999998 789999999999984
No 16
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=96.87 E-value=0.0014 Score=58.00 Aligned_cols=55 Identities=22% Similarity=0.350 Sum_probs=45.8
Q ss_pred cCCCceEecCCC-CcHhHHHhhcccccccceEEEEECCEecCC----CccCCCCCeEEEEec
Q 003428 569 TPRGEIKNLPKG-ATVVDYAYMIHTEIGNKMVAAKVNGNLVSP----THVLANAEVVEIITY 625 (820)
Q Consensus 569 tP~G~i~~lP~G-aT~lDfAy~Iht~lg~~~~~akVNG~~v~l----~~~L~~gd~VeIlT~ 625 (820)
+=+|+.+++|.| +|+.|+--.+. +....+++-|||+.||. +++|++||.|+|++.
T Consensus 24 ~vNGe~~el~~~~~Tv~dLL~~L~--~~~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~~ 83 (87)
T 1tyg_B 24 QLNGKDVKWKKDTGTIQDLLASYQ--LENKIVIVERNKEIIGKERYHEVELCDRDVIEIVHF 83 (87)
T ss_dssp EETTEEECCSSSCCBHHHHHHHTT--CTTSCCEEEETTEEECGGGTTTSBCCSSSEEEEEEE
T ss_pred EECCEEEECCCCCCcHHHHHHHhC--CCCCCEEEEECCEECChhhcCCcCCCCCCEEEEEcc
Confidence 346899999998 99999977764 33455679999999998 678999999999984
No 17
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=96.82 E-value=0.00042 Score=59.70 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=47.1
Q ss_pred eecCCCceEecCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEe
Q 003428 567 VFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (820)
Q Consensus 567 VftP~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l~~~L~~gd~VeIlT 624 (820)
....+|+.+++|.|+|+.|+-..+.-. ...+.+-|||+.++.+++|++||.|+|++
T Consensus 17 ~~~~n~~~~~~~~~~Tv~dLl~~L~~~--~~~v~VavNg~~v~~~~~L~dGD~V~i~p 72 (77)
T 1rws_A 17 IGRNIEKEIEWREGMKVRDILRAVGFN--TESAIAKVNGKVVLEDDEVKDGDFVEVIP 72 (77)
T ss_dssp TTCCCCCCCCCCSSCCHHHHHHTTTCS--SCSSCEEETTEEECSSSCCCSSCCCBCSC
T ss_pred hcccCCEEEECCCCCcHHHHHHHhCCC--CcCEEEEECCEECCCCCCcCCCCEEEEEc
Confidence 345678899999999999998877643 34457889999999999999999999986
No 18
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=96.78 E-value=0.00054 Score=61.94 Aligned_cols=54 Identities=19% Similarity=0.088 Sum_probs=43.7
Q ss_pred eEecCCCCcHhHHHhhc-----ccccccceEEEEECCEecCCCccCCCCCeEEEEeccC
Q 003428 574 IKNLPKGATVVDYAYMI-----HTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNA 627 (820)
Q Consensus 574 i~~lP~GaT~lDfAy~I-----ht~lg~~~~~akVNG~~v~l~~~L~~gd~VeIlT~~~ 627 (820)
..++|.|+|+.|.--+. |+++.-.....-|||+.|+++++|++||.|||+..=.
T Consensus 29 ~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~d~~L~dGDRVEIyrpl~ 87 (97)
T 2hj1_A 29 SFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLTDVLKEGDRIEIYRPLL 87 (97)
T ss_dssp EEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCTTCBCCTTCEEEECCCCC
T ss_pred EEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCCCccCCCCCEEEEEeccc
Confidence 45889999999985443 5566555567889999999999999999999987543
No 19
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=96.74 E-value=0.0008 Score=57.78 Aligned_cols=51 Identities=14% Similarity=0.168 Sum_probs=41.7
Q ss_pred CceEecCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEec
Q 003428 572 GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (820)
Q Consensus 572 G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l~~~L~~gd~VeIlT~ 625 (820)
...+++|.|+|+.|+.-.+.-... -+.+.|||+.+|.++.++ ||.|||++.
T Consensus 12 ~~~~ev~~g~Tv~dLL~~Lgl~~~--~VvV~vNG~~v~~d~~l~-GD~VeIv~~ 62 (74)
T 2l32_A 12 TSEVAVDDDGTYADLVRAVDLSPH--EVTVLVDGRPVPEDQSVE-VDRVKVLRL 62 (74)
T ss_dssp EEEEECSTTCSHHHHHHTTCCCSS--CCCEECCCCCCCTTSSSC-CCCEEECSS
T ss_pred ceeEEcCCCCcHHHHHHHcCCCcc--eEEEEECCEECCHHHCCC-CCEEEEEEe
Confidence 345899999999999877654333 236899999999999886 999999985
No 20
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=96.53 E-value=0.0028 Score=53.48 Aligned_cols=50 Identities=18% Similarity=0.227 Sum_probs=42.2
Q ss_pred eEecCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEec
Q 003428 574 IKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (820)
Q Consensus 574 i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l~~~L~~gd~VeIlT~ 625 (820)
.+++|.|.|+.|+--.+.-. ...+.+-|||+.++.+++|++||.|+|++.
T Consensus 17 ~~~~~~~~tv~~Ll~~l~~~--~~~v~vavN~~~v~~~~~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 17 ILESGAPRRIKDVLGELEIP--IETVVVKKNGQIVIDEEEIFDGDIIEVIRV 66 (70)
T ss_dssp EEEESSCCBHHHHHHHTTCC--TTTEEEEETTEECCTTSBCCTTCEEEEEEC
T ss_pred eEECCCCCcHHHHHHHhCCC--CCCEEEEECCEECCCcccCCCCCEEEEEec
Confidence 48999999999997776433 344578899999999999999999999974
No 21
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=96.44 E-value=0.0042 Score=51.42 Aligned_cols=52 Identities=25% Similarity=0.287 Sum_probs=43.7
Q ss_pred CCceEecCCCCcHhHHHhhcccccccceEEEEECCEecCCC----ccCCCCCeEEEEec
Q 003428 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPT----HVLANAEVVEIITY 625 (820)
Q Consensus 571 ~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l~----~~L~~gd~VeIlT~ 625 (820)
+|+.+++ .|+|+.|+--.+.- ....+..-|||+.++.+ ++|++||.|+|++.
T Consensus 5 Ng~~~~~-~~~tv~~ll~~l~~--~~~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 5 NGEPRPL-EGKTLKEVLEEMGV--ELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp TTEEECC-TTCCHHHHHHHHTB--CGGGEEEEETTEEEEGGGCCCCCCCTTCEEEEEEC
T ss_pred CCEEEEc-CCCcHHHHHHHcCC--CCCcEEEEECCEECCccccCCcCCCCCCEEEEEee
Confidence 6889999 99999998766643 34556789999999976 89999999999984
No 22
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=96.33 E-value=0.002 Score=55.82 Aligned_cols=55 Identities=13% Similarity=0.318 Sum_probs=45.2
Q ss_pred CCceEecC--CCCcHhHHHhhcccccccceEEEEECCEecCCC----ccCCCCCeEEEEecc
Q 003428 571 RGEIKNLP--KGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPT----HVLANAEVVEIITYN 626 (820)
Q Consensus 571 ~G~i~~lP--~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l~----~~L~~gd~VeIlT~~ 626 (820)
+|+.+++| .|.|+.|+--.+.-.- ...+++-|||++||-+ ++|++||.|||++.-
T Consensus 6 NGe~~e~~~~~~~Tl~~LL~~l~~~~-~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~~V 66 (78)
T 2k5p_A 6 NGKPSTVDGAESLNVTELLSALKVAQ-AEYVTVELNGEVLEREAFDATTVKDGDAVEFLYFM 66 (78)
T ss_dssp TTEEEECSSCSCEEHHHHHHHHTCSC-TTTCCEEETTEECCTTHHHHCEECSSBCEEECCCC
T ss_pred CCEEEEcCCCCCCcHHHHHHHcCCCC-CCcEEEEECCEECChHHcCcccCCCCCEEEEEeee
Confidence 58999999 9999999976664321 3445789999999997 789999999999863
No 23
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.27 E-value=0.0028 Score=69.97 Aligned_cols=62 Identities=18% Similarity=0.281 Sum_probs=52.9
Q ss_pred CCeeeec--CC-CceEecCCCCcHhHHHhhcccccccceEEEEE----------C-------C--EecCCCccCCCCCeE
Q 003428 563 SRVFVFT--PR-GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKV----------N-------G--NLVSPTHVLANAEVV 620 (820)
Q Consensus 563 ~~I~Vft--P~-G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akV----------N-------G--~~v~l~~~L~~gd~V 620 (820)
+-|.+|| |+ -+...+++|+|+-|+|+.||+++....+.|.| . | ++..-+|.+++||+|
T Consensus 283 ~li~~ft~g~~e~~aw~i~~g~ta~~~a~~IH~d~~~~fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdi~ 362 (368)
T 2dby_A 283 DLLTFFTAGEKEVRAWTVRRGTKAPRAAGEIHSDMERGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQDGDVI 362 (368)
T ss_dssp TEEEEEEESSSCEEEEEEETTCBHHHHHHHHCHHHHHSCCEEEEEEHHHHHHHTSHHHHHHTTCCEEECTTCBCCTTEEE
T ss_pred CCEEEECCCCCCcceEEecCCCcHHHHHHhhHHHHHhhCeEEEEccHHHHHHhCCHHHHHhcCCccccCCCceecCCCEE
Confidence 3567777 43 26889999999999999999999999999988 1 5 677999999999999
Q ss_pred EEEe
Q 003428 621 EIIT 624 (820)
Q Consensus 621 eIlT 624 (820)
++..
T Consensus 363 ~~~f 366 (368)
T 2dby_A 363 YVLF 366 (368)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9864
No 24
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=96.26 E-value=0.0036 Score=53.50 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=44.1
Q ss_pred CCceEecCCCCcHhHHHhhcccccccceEEEEECCEecCCC----ccCCCCCeEEEEecc
Q 003428 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPT----HVLANAEVVEIITYN 626 (820)
Q Consensus 571 ~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVNG~~v~l~----~~L~~gd~VeIlT~~ 626 (820)
+|+.+++ .|.|+.|+.-.+.-. ...+++.|||++||-+ ++|++||.|||++.-
T Consensus 6 NG~~~e~-~~~Tl~~LL~~l~~~--~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~~V 62 (73)
T 2kl0_A 6 NGEQREV-QSASVAALMTELDCT--GGHFAVALNYDVVPRGKWDETPVTAGDEIEILTPR 62 (73)
T ss_dssp TTEEECC-CCSBHHHHHHHTTCC--SSSCEEEESSSEECHHHHTTCBCCTTCEEEEECCC
T ss_pred CCEEEEc-CCCcHHHHHHHcCCC--CCcEEEEECCEECChHHcCcccCCCCCEEEEEccc
Confidence 5889999 999999997766433 4455799999999995 789999999999864
No 25
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.23 E-value=0.0031 Score=69.54 Aligned_cols=62 Identities=23% Similarity=0.287 Sum_probs=53.0
Q ss_pred CCeeeec--CC-CceEecCCCCcHhHHHhhcccccccceEEEEE----------C-------C--EecCCCccCCCCCeE
Q 003428 563 SRVFVFT--PR-GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKV----------N-------G--NLVSPTHVLANAEVV 620 (820)
Q Consensus 563 ~~I~Vft--P~-G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akV----------N-------G--~~v~l~~~L~~gd~V 620 (820)
+-|.+|| |+ -+...+++|+|+-|+|+.||+++....+.|.| . | ++..-+|.+++||+|
T Consensus 278 ~li~~ft~g~~e~raw~i~~G~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~~~~~~~k~~g~~r~egk~y~v~dgDii 357 (363)
T 1jal_A 278 NLQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVM 357 (363)
T ss_dssp TEEEEEEECSSEEEEEEEETTCBHHHHHHTTCTTHHHHCCEEEEECHHHHHHTTSHHHHHHTTCCEEECTTCBCCTTCEE
T ss_pred CCEEEECCCCCCcceeEecCCCcHHHHHHhhHHHHHhccEEEEEcCHHHHHHhCCHHHHHhcCCeeccCCccEecCCCEE
Confidence 3567777 33 26899999999999999999999999999998 1 5 678999999999999
Q ss_pred EEEe
Q 003428 621 EIIT 624 (820)
Q Consensus 621 eIlT 624 (820)
++-.
T Consensus 358 ~f~f 361 (363)
T 1jal_A 358 HFRF 361 (363)
T ss_dssp EEES
T ss_pred EEEe
Confidence 9854
No 26
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.09 E-value=0.0053 Score=68.49 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=54.0
Q ss_pred CCeeeec--CC-CceEecCCCCcHhHHHhhcccccccceEEEEEC-----------------C--EecCCCccCCCCCeE
Q 003428 563 SRVFVFT--PR-GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVN-----------------G--NLVSPTHVLANAEVV 620 (820)
Q Consensus 563 ~~I~Vft--P~-G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVN-----------------G--~~v~l~~~L~~gd~V 620 (820)
+-|.+|| || =+..++++|+|+.|+|..||+++....+.|.|= | +.+.-+|.+++||+|
T Consensus 304 ~li~~fT~g~~evrawti~~g~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~Gk~y~v~dgDii 383 (396)
T 2ohf_A 304 QLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDII 383 (396)
T ss_dssp TEEEEEEESSSEEEEEEEETTCBHHHHHHTTCTHHHHHEEEEEEECHHHHHHHCSHHHHHHTTCCEEECTTCBCCTTCEE
T ss_pred CCEEEECCCCCcceeEEecCCCcHHHHHhhhHHHHHhcceEEEEccHHHHHHhCCHHHHHhcCcccccCCCceeeCCCEE
Confidence 3566777 44 268899999999999999999999999988862 3 789999999999999
Q ss_pred EEEecc
Q 003428 621 EIITYN 626 (820)
Q Consensus 621 eIlT~~ 626 (820)
++..+-
T Consensus 384 ~f~fn~ 389 (396)
T 2ohf_A 384 FFKFNT 389 (396)
T ss_dssp EEEEC-
T ss_pred EEEecC
Confidence 998753
No 27
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=95.32 E-value=0.01 Score=50.42 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=39.7
Q ss_pred ceEecCCCCcHhHHHhhc---ccccccceEEEEECCEecCCCccCCCCCeEEEEe
Q 003428 573 EIKNLPKGATVVDYAYMI---HTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (820)
Q Consensus 573 ~i~~lP~GaT~lDfAy~I---ht~lg~~~~~akVNG~~v~l~~~L~~gd~VeIlT 624 (820)
..+++|.|+|+.|+--.+ |+++..-.+..-|||+.++.+++|++||.|+|+.
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~p~~~~v~~~v~vNg~~v~~~~~L~~gD~V~i~p 72 (77)
T 2q5w_D 18 EDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIP 72 (77)
T ss_dssp EECCCSSCEEHHHHHHHHHHHCGGGTTCCCEEEETTEEECTTSEECTTCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHCcchhcceEEEEECCEECCCCCCcCCCCEEEEEC
Confidence 356778999999976554 3333221126889999999999999999999986
No 28
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=94.78 E-value=0.037 Score=48.32 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=40.7
Q ss_pred eEecCCCCcHhHHHhhc---cccccc----------ceEEEEECCEecCCCccCCCCCeEEEEe
Q 003428 574 IKNLPKGATVVDYAYMI---HTEIGN----------KMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (820)
Q Consensus 574 i~~lP~GaT~lDfAy~I---ht~lg~----------~~~~akVNG~~v~l~~~L~~gd~VeIlT 624 (820)
.+++|.|+|+-|+--.+ |+++.. ..+..-|||+.++++++|++||.|.|+.
T Consensus 21 ~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~~l~~gDeV~i~P 84 (89)
T 3po0_A 21 RVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGEATAAGDELALFP 84 (89)
T ss_dssp EEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTSBCCTTCEEEEEC
T ss_pred EEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCcccCCCCEEEEEC
Confidence 56789999999975444 565543 1256779999999999999999999986
No 29
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=94.59 E-value=0.028 Score=50.24 Aligned_cols=52 Identities=35% Similarity=0.416 Sum_probs=40.2
Q ss_pred ceEecCCCCcHhHHHhhc---cccccc----------ceEEEEECCEecCCCccCCCCCeEEEEe
Q 003428 573 EIKNLPKGATVVDYAYMI---HTEIGN----------KMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (820)
Q Consensus 573 ~i~~lP~GaT~lDfAy~I---ht~lg~----------~~~~akVNG~~v~l~~~L~~gd~VeIlT 624 (820)
..+++|.|+|+.|+--.+ ++++.. ..+..-|||+.++++++|++||.|+|+.
T Consensus 29 ~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~~L~dGDeV~i~p 93 (98)
T 1vjk_A 29 EEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKDGDVVGVFP 93 (98)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTCBCCTTCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCCCCCCCCEEEEEC
Confidence 456778899998875444 333322 3467889999999999999999999986
No 30
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.56 E-value=0.014 Score=65.03 Aligned_cols=62 Identities=18% Similarity=0.238 Sum_probs=50.8
Q ss_pred CCeeeec--CC-CceEecCCCCcHhHHHhhcccccccceEEEEEC-----------------CE--ecCCCccCCCCCeE
Q 003428 563 SRVFVFT--PR-GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVN-----------------GN--LVSPTHVLANAEVV 620 (820)
Q Consensus 563 ~~I~Vft--P~-G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVN-----------------G~--~v~l~~~L~~gd~V 620 (820)
+-|.+|| || -+..++++|+|+-|+|+.|||++....+.|.|= |+ ...-+|.+++||+|
T Consensus 306 ~l~~~ft~g~~e~rawti~~G~~a~~aag~IH~d~~~gfi~ae~~~~~d~~~~g~~~~~k~~g~~r~~gk~y~v~dgdv~ 385 (392)
T 1ni3_A 306 NLINYFTCGEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEYVMESGDIA 385 (392)
T ss_dssp TEEEEEECCSSEEEEEEEETTCBHHHHHHHHCHHHHHTCSEEEEECHHHHHHHTSHHHHHHTTCSCEEETTCBCCTTCEE
T ss_pred CCEEEECCCCCcceeEEeCCCCcHHHHccccchhhhhccEEEEECCHHHHHHcCCHHHHHHcCCccccCCceeeeCCCEE
Confidence 4567777 33 268999999999999999999999999988885 43 36777999999999
Q ss_pred EEEe
Q 003428 621 EIIT 624 (820)
Q Consensus 621 eIlT 624 (820)
.+-.
T Consensus 386 ~f~f 389 (392)
T 1ni3_A 386 HWKA 389 (392)
T ss_dssp ECC-
T ss_pred EEEc
Confidence 8754
No 31
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=93.31 E-value=0.099 Score=44.55 Aligned_cols=47 Identities=23% Similarity=0.210 Sum_probs=35.4
Q ss_pred CCCCcHhHHHhhcc---cccc----cceEEEEECCEecCCCccCCCCCeEEEEe
Q 003428 578 PKGATVVDYAYMIH---TEIG----NKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (820)
Q Consensus 578 P~GaT~lDfAy~Ih---t~lg----~~~~~akVNG~~v~l~~~L~~gd~VeIlT 624 (820)
|.|+|+.|+--.+. +++. ..-+..-|||+.++++++|++||.|.|+.
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFP 76 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCTTCBCCTTCEEEEEC
T ss_pred CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCCCCCCCCCCEEEEeC
Confidence 67889988755443 3222 22236889999999999999999999986
No 32
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=90.77 E-value=0.2 Score=43.35 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=38.0
Q ss_pred eEecCCCCcHhHHHhhcccc---ccc----------ceEEEEECCEecC----CCccCCCCCeEEEEe
Q 003428 574 IKNLPKGATVVDYAYMIHTE---IGN----------KMVAAKVNGNLVS----PTHVLANAEVVEIIT 624 (820)
Q Consensus 574 i~~lP~GaT~lDfAy~Iht~---lg~----------~~~~akVNG~~v~----l~~~L~~gd~VeIlT 624 (820)
-.++|.|+|+.|+--.+... +.. ..+.+-|||+.++ ++++|++||.|+|+.
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKGLDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCSSSCBCCTTCEEEEEC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCCCCcCCCCCCEEEEeC
Confidence 45677789999875554322 211 2347889999997 799999999999986
No 33
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=87.79 E-value=0.46 Score=42.46 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=36.5
Q ss_pred eEecCCCCcHhHHHhhc---ccccccc---------eE-------EEEECCEec----CCCccCCCCCeEEEEe
Q 003428 574 IKNLPKGATVVDYAYMI---HTEIGNK---------MV-------AAKVNGNLV----SPTHVLANAEVVEIIT 624 (820)
Q Consensus 574 i~~lP~GaT~lDfAy~I---ht~lg~~---------~~-------~akVNG~~v----~l~~~L~~gd~VeIlT 624 (820)
-.+++ |+|+.|+--.+ |+++... .+ ..-|||+.+ .++++|++||.|+|+.
T Consensus 22 ~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~~~~~L~~gD~V~i~p 94 (99)
T 2l52_A 22 ELPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEGLETLLKDSDEIGILP 94 (99)
T ss_dssp EEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTSTTSCCCTTEEEEEEC
T ss_pred eEEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccCCCCCCCCCCCEEEEEC
Confidence 34555 78988865444 4444332 23 788999999 7899999999999986
No 34
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=87.59 E-value=0.64 Score=40.72 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=36.8
Q ss_pred EecCCCCcHhHHHhhc---cccccc------------ceEEEEECCEecC----CCccCCCCCeEEEEec
Q 003428 575 KNLPKGATVVDYAYMI---HTEIGN------------KMVAAKVNGNLVS----PTHVLANAEVVEIITY 625 (820)
Q Consensus 575 ~~lP~GaT~lDfAy~I---ht~lg~------------~~~~akVNG~~v~----l~~~L~~gd~VeIlT~ 625 (820)
++ +.|+|+-|+--.+ |+++.. ..+..-|||+.++ ++++|++||.|.|+..
T Consensus 21 ~~-~~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~~~~L~~gDeV~i~Pp 89 (93)
T 3dwg_C 21 VS-ASGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGLATAIADGDSVTILPA 89 (93)
T ss_dssp EE-ECCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGGGCBCCTTCEEEEEEC
T ss_pred Ee-cCCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCCCcCCCCCCEEEEECC
Confidence 44 5689998875444 343321 1367889999998 6999999999999873
No 35
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=86.94 E-value=0.56 Score=39.50 Aligned_cols=51 Identities=14% Similarity=0.243 Sum_probs=37.9
Q ss_pred ceEecCCCCcHhHHHhhcc--ccccc--ceEEEEECCEe-cCCCccCCCCCeEEEEe
Q 003428 573 EIKNLPKGATVVDYAYMIH--TEIGN--KMVAAKVNGNL-VSPTHVLANAEVVEIIT 624 (820)
Q Consensus 573 ~i~~lP~GaT~lDfAy~Ih--t~lg~--~~~~akVNG~~-v~l~~~L~~gd~VeIlT 624 (820)
+.+++ .|+|+.|+--.+. +++.. ..+..-|||+. .+.+++|++||.|.|+.
T Consensus 14 ~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 14 ENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLLP 69 (74)
T ss_dssp CCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCCCCTTCEEEEEC
T ss_pred eEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcCCCCCCEEEEEC
Confidence 34667 7899999854443 23321 34578899999 77899999999999986
No 36
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=84.25 E-value=1.6 Score=44.75 Aligned_cols=54 Identities=15% Similarity=0.070 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhhcCCccccCCcccchHHHHHHHHH----HcCCCHHH-HHHHhhccccc
Q 003428 146 LELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILG----ELELDWES-IAAGLLHDTVE 202 (820)
Q Consensus 146 ~~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa----elglD~~t-IiAALLHDvVE 202 (820)
.++|.++..|+...+.+.. +.--+.|.+.|+.+.. ..+.|.+. .+||||||+..
T Consensus 4 ~~~i~~~~~~v~~~l~~~~---~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AalLHDig~ 62 (223)
T 3dto_A 4 QAILQSAEAWVKKQLMDEY---SGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLID 62 (223)
T ss_dssp HHHHHHHHHHHHHTTTTC-------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHhhcCC---CCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccc
Confidence 3568888889888876542 2233789999987654 34778765 78999999983
No 37
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=82.80 E-value=1.4 Score=43.42 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=38.3
Q ss_pred eEecCCCCcHhHHHhhc---cccccc---------ceEEEEECCEecCC----CccCCCCCeEEEEec
Q 003428 574 IKNLPKGATVVDYAYMI---HTEIGN---------KMVAAKVNGNLVSP----THVLANAEVVEIITY 625 (820)
Q Consensus 574 i~~lP~GaT~lDfAy~I---ht~lg~---------~~~~akVNG~~v~l----~~~L~~gd~VeIlT~ 625 (820)
..++|. +|+.|+--.+ |+++.. ..+..-|||+.++. +++|++||.|+|+..
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~~dt~L~dGDeVai~Pp 83 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLFPP 83 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTGGGCBCCTTCEEEEECS
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCCCccCCCCCCEEEEECc
Confidence 446664 8998875444 444432 33478899999998 899999999999975
No 38
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=76.70 E-value=3.5 Score=36.58 Aligned_cols=50 Identities=12% Similarity=0.169 Sum_probs=35.2
Q ss_pred EecC--CCCcHhHHHhhc---ccc----c------cc--ceEEEEECCEecC----CCccCCCCCeEEEEe
Q 003428 575 KNLP--KGATVVDYAYMI---HTE----I------GN--KMVAAKVNGNLVS----PTHVLANAEVVEIIT 624 (820)
Q Consensus 575 ~~lP--~GaT~lDfAy~I---ht~----l------g~--~~~~akVNG~~v~----l~~~L~~gd~VeIlT 624 (820)
+++| .|+|+-|+--.+ |+. + |. ..+-.-|||+.+. ++++|++||.|.|+.
T Consensus 24 ~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d~~L~dgDeVa~~P 94 (99)
T 2qjl_A 24 IKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFTS 94 (99)
T ss_dssp EEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEEE
T ss_pred EecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCCCcCcCCCCEEEEEC
Confidence 4567 789998875444 322 2 21 1235889999764 789999999999986
No 39
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=72.70 E-value=3.1 Score=43.01 Aligned_cols=72 Identities=4% Similarity=-0.158 Sum_probs=52.8
Q ss_pred ccCCCCCeEEEEeccCCCCCCcCCCChhHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC--ccccc
Q 003428 612 HVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITADTVGDFVADSGEES--EVEDL 689 (820)
Q Consensus 612 ~~L~~gd~VeIlT~~~~~~~~~~~p~~~WL~~v~T~~Ar~~ir~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~f 689 (820)
.+|..||.|+.....+. |.+...+| ++.|++..||.+.|+...... .++.|
T Consensus 74 ~~l~~g~~V~~~vD~~r-------------------R~~~~~~H--------Ta~HLL~~al~~~~g~~~~G~~v~~~~~ 126 (241)
T 3kew_A 74 KEPKKLKNLQCELDWER-------------------RFDGMQQH--------LGQHLLSGCFYDLFGANTCGFHLGKEIS 126 (241)
T ss_dssp SCCCCCSSEEEEECHHH-------------------HHHHHHHH--------HHHHHHHHHHHHHHCCCEEEEEECSSCE
T ss_pred CcCCCCCEEEEEECHHH-------------------hhhHHHHH--------HHHHHHHHHHHHHCCCCeEeccccCCeE
Confidence 35778999998775321 44455556 899999999999997653332 45899
Q ss_pred cccccC--CchhHHHHHHHHhhc
Q 003428 690 SDGSKQ--DKPLWEKILMNVVQM 710 (820)
Q Consensus 690 y~~i~~--~~~~~~~i~~~~~~~ 710 (820)
|+|+.. +..++++||+.|++.
T Consensus 127 r~Df~~~lt~e~l~~IE~~vn~~ 149 (241)
T 3kew_A 127 TVDIVGFLDEKTIREAEKEANRL 149 (241)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHH
Confidence 999963 566799999888766
No 40
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=69.68 E-value=5 Score=40.75 Aligned_cols=70 Identities=10% Similarity=0.018 Sum_probs=50.7
Q ss_pred cCCCCCeEEEEeccCCCCCCcCCCChhHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCC---CCccc
Q 003428 613 VLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITADTVGDFVAD--SGE---ESEVE 687 (820)
Q Consensus 613 ~L~~gd~VeIlT~~~~~~~~~~~p~~~WL~~v~T~~Ar~~ir~~l~~~~~~~~~~~~~~~l~~~~~~--~~~---~~~~~ 687 (820)
+|+.||.|+..-..+ .+.+...+| ++.|++..||.+.|+. ... .+.++
T Consensus 76 ~l~~g~~v~~~vD~~-------------------rR~~~~~~H--------TA~HlL~~Al~~~~g~~~~~~~g~~v~~~ 128 (216)
T 2e1b_A 76 KFKVGDEVELKIDWD-------------------YRYKLMRIH--------TGLHLLEHVLNEVLGEGNWQLVGSGMSVE 128 (216)
T ss_dssp GCCSSSCEEEEECHH-------------------HHHHHHHHH--------HHHHHHHHHHHHHHTTTSCEEEECCBCSS
T ss_pred CcCCCCEEEEEECHH-------------------HHHHHHHHh--------HHHHHHHHHHHHHcCCccceeeeeeEcCC
Confidence 577888888765431 155666666 8999999999999976 121 23578
Q ss_pred cccccccC----CchhHHHHHHHHhhc
Q 003428 688 DLSDGSKQ----DKPLWEKILMNVVQM 710 (820)
Q Consensus 688 ~fy~~i~~----~~~~~~~i~~~~~~~ 710 (820)
.||+|+.. ++ ++++||+.|++.
T Consensus 129 ~~r~Df~~~~~lt~-el~~IE~~vn~~ 154 (216)
T 2e1b_A 129 KGRYDIAYPENLNK-YKEQIISLFNKY 154 (216)
T ss_dssp EEEEEEECSSCGGG-GHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCCH-HHHHHHHHHHHH
Confidence 89999964 33 499999998765
No 41
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=66.90 E-value=4.8 Score=41.75 Aligned_cols=52 Identities=25% Similarity=0.181 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhcCCccccCCcccchHHHHHHHHHHcCCCHH-HHHHHhhccc
Q 003428 149 VRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWE-SIAAGLLHDT 200 (820)
Q Consensus 149 l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILaelglD~~-tIiAALLHDv 200 (820)
|.+|+++-....+..-.....|=+.|.+++|....+-|.|.+ .++||||||+
T Consensus 38 i~ea~~~Ln~lvDeSDPD~~v~ql~HaLQTAe~ar~dg~d~dw~~laaLlHDL 90 (250)
T 2ibn_A 38 VMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDL 90 (250)
T ss_dssp HHHHHHHGGGCCCTTC---CCCHHHHHHHHHHHHHHHSTTCHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhcCCcCCCCcccHHHHHHHHHHHHHHhCcChhHHHHHHHHhcc
Confidence 556666655554444333455668999999999987788845 4599999996
No 42
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=64.52 E-value=6.8 Score=37.29 Aligned_cols=55 Identities=9% Similarity=-0.151 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCC---cc-ccccccccC----CchhHHHHHHHHhhc
Q 003428 648 SARHKIMKFLREQAALSASEITADTVGDFVA-DSGEES---EV-EDLSDGSKQ----DKPLWEKILMNVVQM 710 (820)
Q Consensus 648 ~Ar~~ir~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~~---~~-~~fy~~i~~----~~~~~~~i~~~~~~~ 710 (820)
.|+...+| +++|++..||.+.|+ ..++.. .+ +++|++++. ++.++++|++.|.+.
T Consensus 2 ~g~~~~~H--------Sa~HlL~~Al~~~~~~~~~~~~~~~i~~~~~~~~~d~~~~~t~e~l~~IE~~~n~~ 65 (157)
T 1v4p_A 2 YSIEVRTH--------SALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEK 65 (157)
T ss_dssp CCHHHHHH--------HHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSCCCHHHHHHHHHHHHHH
T ss_pred cchHHHhH--------HHHHHHHHHHHHHhCCCcEEecCceecCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 35666777 999999999999998 344432 23 378888863 567899999999876
No 43
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=63.58 E-value=9.5 Score=38.88 Aligned_cols=54 Identities=15% Similarity=0.070 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhhcCCccccCCcccchHHHHHHHHHH----cCCCHHH-HHHHhhccccc
Q 003428 146 LELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGE----LELDWES-IAAGLLHDTVE 202 (820)
Q Consensus 146 ~~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILae----lglD~~t-IiAALLHDvVE 202 (820)
.++|.++..|+...+.+.. +.--+.|.+.|+.+... .+.|.+. .+||||||+..
T Consensus 4 ~~~i~~~~~~v~~~l~~~~---~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AAlLHDig~ 62 (223)
T 3djb_A 4 QEKIEKTITFVKHILEKDA---SGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVAD 62 (223)
T ss_dssp HHHHHHHHHHHHHHTTSSS---CTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC
T ss_pred HHHHHHHHHHHHHHhhcCC---CcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccc
Confidence 3568888889888876542 22337999999887643 3667765 69999999984
No 44
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=62.29 E-value=6.1 Score=36.81 Aligned_cols=24 Identities=25% Similarity=0.159 Sum_probs=21.5
Q ss_pred EEEECCEecCCCccCCCCCeEEEE
Q 003428 600 AAKVNGNLVSPTHVLANAEVVEII 623 (820)
Q Consensus 600 ~akVNG~~v~l~~~L~~gd~VeIl 623 (820)
+..|||+.|.-.++|++||+|.|=
T Consensus 91 gt~VNG~~V~~~~~L~~GD~I~lG 114 (124)
T 3fm8_A 91 RTFVNGSSVSSPIQLHHGDRILWG 114 (124)
T ss_dssp CEEETTEECCSCEEECTTCEEEET
T ss_pred CEEECCEEcCCcEECCCCCEEEEC
Confidence 789999999877899999999983
No 45
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=55.03 E-value=14 Score=36.94 Aligned_cols=50 Identities=26% Similarity=0.186 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhcCCccccCCcccchHHHHHHHHHH----cCCCHHH-HHHHhhccc
Q 003428 148 LVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGE----LELDWES-IAAGLLHDT 200 (820)
Q Consensus 148 ~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILae----lglD~~t-IiAALLHDv 200 (820)
.+.++..+......+. .....+.|.+.|+.+... ++.|.+. .+||||||+
T Consensus 14 l~~~~~~~v~~~~~~~---~~~h~~~H~~rV~~~a~~la~~~~~d~~~l~~AaLLHDI 68 (220)
T 2pq7_A 14 LREILNIVREAFKDYD---DPAHDISHTFRVMENASEIASREKCDLQKAIIAALLHDI 68 (220)
T ss_dssp HHHHHHHHHHHHTTCC---CTTTSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcC---CCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcC
Confidence 3556667776655421 223347899999887643 4777654 699999998
No 46
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=55.00 E-value=12 Score=37.83 Aligned_cols=54 Identities=22% Similarity=0.097 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhcCCccccCCcccchHHHHHHHH----HH-cCCCHH-HHHHHhhcccccc
Q 003428 147 ELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARIL----GE-LELDWE-SIAAGLLHDTVED 203 (820)
Q Consensus 147 ~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~IL----ae-lglD~~-tIiAALLHDvVED 203 (820)
.++.++..+......++. ...-+.|.+.|+... +. .+.|.+ ..+||||||+...
T Consensus 5 ~li~~~~~~v~~~~~~~~---~~H~~~H~~rV~~~a~~i~a~~~~~d~~~l~lAAlLHDigk~ 64 (225)
T 2qgs_A 5 MKIKKAYEYMKSFHQHDT---TGHDIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDS 64 (225)
T ss_dssp HHHHHHHHHHHHHTTTCS---SCHHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHhcCC---CccCHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHcCCCC
Confidence 456667777766655321 112368999998874 32 466765 4699999999863
No 47
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=54.16 E-value=13 Score=37.03 Aligned_cols=54 Identities=19% Similarity=0.072 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhcCCccccCCcccchHHHHHHHHHH----cCCCHHH-HHHHhhcccccc
Q 003428 147 ELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGE----LELDWES-IAAGLLHDTVED 203 (820)
Q Consensus 147 ~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILae----lglD~~t-IiAALLHDvVED 203 (820)
+++.++..+......+. ....-+.|.+.|+.+... .+.|.+. .+||||||+.-.
T Consensus 5 ~li~~~~~~v~~~~~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~v~~AAlLHDig~~ 63 (209)
T 3b57_A 5 EIILSAKNWMHSHFENE---TTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDI 63 (209)
T ss_dssp HHHHHHHHHHHTTC---------CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTCCC-
T ss_pred HHHHHHHHHHHHHHhcC---CCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCcc
Confidence 34666666666655422 111227899999887643 4778765 699999999743
No 48
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=53.19 E-value=15 Score=33.72 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=34.9
Q ss_pred EecC---CCCcHhHHHhhccc-------cc----c--cceEEEEECCEec----CCCccCCCCCeEEEEec
Q 003428 575 KNLP---KGATVVDYAYMIHT-------EI----G--NKMVAAKVNGNLV----SPTHVLANAEVVEIITY 625 (820)
Q Consensus 575 ~~lP---~GaT~lDfAy~Iht-------~l----g--~~~~~akVNG~~v----~l~~~L~~gd~VeIlT~ 625 (820)
+++| .++|+-|.--.+-. ++ | +.-+-..|||+.+ .++++|++||.|.|+..
T Consensus 34 vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gldt~L~dGDeV~iip~ 104 (114)
T 1wgk_A 34 VALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFIST 104 (114)
T ss_dssp EEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEEEEC
T ss_pred EEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeeccCCcCcCCCCCCEEEEeCC
Confidence 5566 34688885433322 22 2 2246799999864 68999999999999874
No 49
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=52.15 E-value=8.8 Score=33.25 Aligned_cols=24 Identities=8% Similarity=0.213 Sum_probs=21.4
Q ss_pred EEECCEecCCCccCCCCCeEEEEe
Q 003428 601 AKVNGNLVSPTHVLANAEVVEIIT 624 (820)
Q Consensus 601 akVNG~~v~l~~~L~~gd~VeIlT 624 (820)
.+|||+.+..++.|+.||+|+|.-
T Consensus 28 V~VNg~~~~~~~~v~~gd~I~v~~ 51 (92)
T 2k6p_A 28 VWLNGSCAKASKEVKAGDTISLHY 51 (92)
T ss_dssp CEETTEECCTTCBCCTTCEEEECC
T ss_pred EEECCEEcCCCCCcCCCCEEEEEe
Confidence 689999999999999999999843
No 50
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=51.61 E-value=16 Score=33.24 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=23.5
Q ss_pred EEEEECCEec----CCCccCCCCCeEEEEec
Q 003428 599 VAAKVNGNLV----SPTHVLANAEVVEIITY 625 (820)
Q Consensus 599 ~~akVNG~~v----~l~~~L~~gd~VeIlT~ 625 (820)
+-..|||+.+ .++++|++||+|.|+..
T Consensus 68 IlVLVNg~d~e~l~gldt~L~dgD~V~fist 98 (110)
T 2k9x_A 68 ILVLVNSCDAEVVGGMDYVLNDGDTVEFIST 98 (110)
T ss_dssp EEEEESSSBHHHHTSSCCCCCSSCEEEEEEC
T ss_pred eEEEECCeeeeccCCcccCCCCcCEEEEeCC
Confidence 4589999988 68999999999999764
No 51
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=51.18 E-value=8.8 Score=37.97 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=20.8
Q ss_pred EEEEEEecccchHHHHHHHhhc
Q 003428 798 WFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 798 ~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
.|.|.|-||.||++.||++|+.
T Consensus 95 iltv~g~DrpGiva~Vt~~La~ 116 (195)
T 2nyi_A 95 ELYVEGPDSEGIVEAVTAVLAK 116 (195)
T ss_dssp EEEEEEECCTTHHHHHHHHHHH
T ss_pred EEEEEeCCCcCHHHHHHHHHHH
Confidence 8999999999999999999975
No 52
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=49.96 E-value=10 Score=33.69 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.3
Q ss_pred EEEECCEecCCCccCCCCCeEEE
Q 003428 600 AAKVNGNLVSPTHVLANAEVVEI 622 (820)
Q Consensus 600 ~akVNG~~v~l~~~L~~gd~VeI 622 (820)
|..|||+.+.-..+|++||+|.|
T Consensus 70 Gt~vng~~i~~~~~L~~Gd~i~~ 92 (106)
T 3gqs_A 70 GVIVEGRKIEHQSTLSANQVVAL 92 (106)
T ss_dssp CCEETTEECSSEEECCTTCCEEE
T ss_pred CeEECCEECCCCeECCCCCEEEE
Confidence 67899999887779999999987
No 53
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=49.89 E-value=9.4 Score=37.47 Aligned_cols=32 Identities=28% Similarity=0.242 Sum_probs=24.4
Q ss_pred ccchHHHHHHHHH----HcCCCHH-HHHHHhhccccc
Q 003428 171 FIIHPVEVARILG----ELELDWE-SIAAGLLHDTVE 202 (820)
Q Consensus 171 Yi~Hpl~VA~ILa----elglD~~-tIiAALLHDvVE 202 (820)
.+.|.+.||.+.. .+|+|++ ..+||||||+=.
T Consensus 20 ~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDiGk 56 (190)
T 3ccg_A 20 RYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAK 56 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC
Confidence 3689999987753 4688765 468999999853
No 54
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=49.48 E-value=9.6 Score=37.32 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=24.3
Q ss_pred ccchHHHHHHHHH----HcCCCHH-HHHHHhhccccc
Q 003428 171 FIIHPVEVARILG----ELELDWE-SIAAGLLHDTVE 202 (820)
Q Consensus 171 Yi~Hpl~VA~ILa----elglD~~-tIiAALLHDvVE 202 (820)
.+.|.+.||.+.. .+|+|.+ ..+||||||+=.
T Consensus 19 ~~~Hs~~Va~~A~~lA~~~g~~~~~~~~agLLHDIGk 55 (188)
T 2o08_A 19 RYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAK 55 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 4679999987753 4688765 468999999853
No 55
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=49.43 E-value=18 Score=36.74 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhhcCCccccCCcccchHHHHHHHHHH----cCCCHHH-HHHHhhccccc
Q 003428 147 ELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGE----LELDWES-IAAGLLHDTVE 202 (820)
Q Consensus 147 ~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILae----lglD~~t-IiAALLHDvVE 202 (820)
..+.++..+......++. ..--+.|.+.|+..... .+.|.+. .+||||||+..
T Consensus 10 ~~i~~~~~~v~~~~~~~~---~~H~~~H~~rV~~~a~~ia~~~~~d~~ll~lAAlLHDigk 67 (231)
T 2pjq_A 10 TQLTAIQTYALQKLAHDH---SGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVID 67 (231)
T ss_dssp HHHHHHHHHHHTSSTTCC---SSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccC---CCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc
Confidence 446667777766555321 11237899999887643 4678775 69999999974
No 56
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=48.07 E-value=12 Score=36.70 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=26.1
Q ss_pred CcccchHHHHHHHH---HH------cCCCHH-HHHHHhhccccc
Q 003428 169 EPFIIHPVEVARIL---GE------LELDWE-SIAAGLLHDTVE 202 (820)
Q Consensus 169 ePYi~Hpl~VA~IL---ae------lglD~~-tIiAALLHDvVE 202 (820)
++-..|-..||.+. +. -+.|.+ .+.+|||||+.|
T Consensus 31 esvaeHs~rVa~~A~~la~~~~~~~~~~d~~~v~~~aLlHD~~E 74 (177)
T 2cqz_A 31 ESIADHSFGVAFITLVLADVLEKRGKRIDVEKALKMAIVHDLAE 74 (177)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHH
Confidence 55568999998776 43 467877 588999999875
No 57
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=47.62 E-value=15 Score=43.99 Aligned_cols=71 Identities=7% Similarity=-0.015 Sum_probs=52.0
Q ss_pred cCCCCCeEEEEeccCCCCCCcCCCChhHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CC--Ccccc
Q 003428 613 VLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITADTVGDFVADSG--EE--SEVED 688 (820)
Q Consensus 613 ~L~~gd~VeIlT~~~~~~~~~~~p~~~WL~~v~T~~Ar~~ir~~l~~~~~~~~~~~~~~~l~~~~~~~~--~~--~~~~~ 688 (820)
.|+.||.|+..-... .|.+...+| ++.|++..||.+.|+... .+ +.++.
T Consensus 590 ~l~vGd~V~~~VD~~-------------------rR~~~mr~H--------TAtHLL~~ALr~vlG~~v~q~Gs~v~~d~ 642 (752)
T 2zze_A 590 AFXEGMIVHGXIDWX-------------------RRIQHMRHH--------TGTHVLMGALVRVLGRHVWQAGSQLTTDW 642 (752)
T ss_dssp GCCTTCEEEEEECHH-------------------HHHHHHHHH--------HHHHHHHHHHHHHHCTTCEEEEEEECSSC
T ss_pred ccCcCCeEEEEEeHH-------------------HHHHHHHHh--------HHHHHHHHHHHHHcCCceeeecCcccCCc
Confidence 477899998866431 145555566 899999999999887532 11 24688
Q ss_pred ccccccC----CchhHHHHHHHHhhc
Q 003428 689 LSDGSKQ----DKPLWEKILMNVVQM 710 (820)
Q Consensus 689 fy~~i~~----~~~~~~~i~~~~~~~ 710 (820)
||+|+.. +..++++||+.|++.
T Consensus 643 ~rfDFs~~~~lt~edL~~IE~~vNei 668 (752)
T 2zze_A 643 ARLDISHYXRISEEELXEIEMLANRI 668 (752)
T ss_dssp EEEEEECSSCCCHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999964 567899999998765
No 58
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=46.64 E-value=11 Score=37.18 Aligned_cols=32 Identities=31% Similarity=0.237 Sum_probs=24.4
Q ss_pred ccchHHHHHHHHH----HcCCCHH-HHHHHhhccccc
Q 003428 171 FIIHPVEVARILG----ELELDWE-SIAAGLLHDTVE 202 (820)
Q Consensus 171 Yi~Hpl~VA~ILa----elglD~~-tIiAALLHDvVE 202 (820)
.+.|.+.||.+.. .+|+|++ ..+||||||+=.
T Consensus 27 ~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDIGK 63 (196)
T 2ogi_A 27 RFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAK 63 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHcCC
Confidence 4679999987753 4688765 468999999853
No 59
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=42.27 E-value=59 Score=25.98 Aligned_cols=62 Identities=11% Similarity=0.101 Sum_probs=45.3
Q ss_pred CeeeecCCCc--eEecCCCCcHhHHHhhccccccc--ceEEEEECCEecCCCcc-----CCCCCeEEEEec
Q 003428 564 RVFVFTPRGE--IKNLPKGATVVDYAYMIHTEIGN--KMVAAKVNGNLVSPTHV-----LANAEVVEIITY 625 (820)
Q Consensus 564 ~I~VftP~G~--i~~lP~GaT~lDfAy~Iht~lg~--~~~~akVNG~~v~l~~~-----L~~gd~VeIlT~ 625 (820)
.|+|-+++|+ .++++...|+.|+--.|+...|- .-..-..+|+...-+.. +++|++|.++..
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA 72 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 3778899997 46788999999998888766553 23445568887754444 579999988753
No 60
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=42.00 E-value=18 Score=33.93 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=22.1
Q ss_pred EEECCEecCCCccCCCCCeEEEEec
Q 003428 601 AKVNGNLVSPTHVLANAEVVEIITY 625 (820)
Q Consensus 601 akVNG~~v~l~~~L~~gd~VeIlT~ 625 (820)
++|||+.+..++.|+.||+|+|.-.
T Consensus 36 V~VNG~~vk~s~~V~~GD~I~I~~~ 60 (133)
T 1dm9_A 36 VHYNGQRSKPSKIVELNATLTLRQG 60 (133)
T ss_dssp EEETTEECCTTCBCCTTCEEEEEET
T ss_pred EEECCEEcCCCCEeCCCCEEEEEeC
Confidence 6799999999999999999998653
No 61
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=41.97 E-value=15 Score=40.53 Aligned_cols=57 Identities=21% Similarity=0.195 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHhhcCCccc--cCC---cccchHHHHHHHHH----HcCCCHHH-HHHHhhcccc
Q 003428 145 ELELVRRALMLAFEAHDGQKRR--SGE---PFIIHPVEVARILG----ELELDWES-IAAGLLHDTV 201 (820)
Q Consensus 145 ~~~~l~~A~~~A~~aH~gQ~Rk--sGe---PYi~Hpl~VA~ILa----elglD~~t-IiAALLHDvV 201 (820)
|..+|-..-.|=.-.+..|.-. .|. .-+.|.++||.+.. .+|++++. -+||||||+=
T Consensus 45 D~~rII~S~~FrRL~~ktQv~~~~~~d~~~tRl~HSl~Va~iar~ia~~l~l~~~l~~~a~LlHDiG 111 (376)
T 2dqb_A 45 DRDRILHTTAFRRLEYKTQVLPGWAGDYYRTRLTHTLEVAQVSRSIARALGLNEDLTEAIALSHDLG 111 (376)
T ss_dssp HHHHHHHSHHHHHGGGSCSSSCSCC--CCCCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTT
T ss_pred HHHHHHCCHHHHHHcCCCccccCCCCcccccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4444545445545556666521 222 23589999998763 57888765 5899999985
No 62
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=38.98 E-value=15 Score=35.79 Aligned_cols=22 Identities=14% Similarity=-0.019 Sum_probs=20.7
Q ss_pred EEEEEEecccchHHHHHHHhhc
Q 003428 798 WFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 798 ~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
.|.|.|.||.|++++||++|+.
T Consensus 95 ~l~v~~~D~~Gil~~v~~~l~~ 116 (192)
T 1u8s_A 95 EVYVESDDKLGLTEKFTQFFAQ 116 (192)
T ss_dssp EEEEEESCCTTHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHHH
Confidence 8999999999999999999975
No 63
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=38.60 E-value=70 Score=25.49 Aligned_cols=62 Identities=13% Similarity=0.192 Sum_probs=45.1
Q ss_pred CeeeecCCCce--EecCCCCcHhHHHhhccccccc--ceEEEEECCEecCCCcc-----CCCCCeEEEEec
Q 003428 564 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGN--KMVAAKVNGNLVSPTHV-----LANAEVVEIITY 625 (820)
Q Consensus 564 ~I~VftP~G~i--~~lP~GaT~lDfAy~Iht~lg~--~~~~akVNG~~v~l~~~-----L~~gd~VeIlT~ 625 (820)
.|+|-+++|+. ++++...|+.|+--.|+...|- .-..-..+|+...-+.. +++|++|.++..
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLR 72 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 36788888874 6788999999998888766553 33455668887654444 579999988764
No 64
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1
Probab=37.73 E-value=20 Score=36.33 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=26.9
Q ss_pred CcccchHHHHHHHHHHc--CCCHHHHHHHhhccccc
Q 003428 169 EPFIIHPVEVARILGEL--ELDWESIAAGLLHDTVE 202 (820)
Q Consensus 169 ePYi~Hpl~VA~ILael--glD~~tIiAALLHDvVE 202 (820)
+..-.|.+.||.+...+ +.|...+.+||+||+.|
T Consensus 54 eSVAeHS~~va~ia~~l~~~~~~r~~~~aL~HD~~E 89 (207)
T 2gz4_A 54 FTVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPE 89 (207)
T ss_dssp CBHHHHHHHHHHHHHHHCTTCCHHHHHHHHTTTTTH
T ss_pred ccHHHHHHHHHHHHHHHCCCCCHHHHHHHHhcCchH
Confidence 44568999999886532 56778899999999877
No 65
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=37.68 E-value=18 Score=34.73 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.8
Q ss_pred EEEECCEecCCCccCCCCCeEEE
Q 003428 600 AAKVNGNLVSPTHVLANAEVVEI 622 (820)
Q Consensus 600 ~akVNG~~v~l~~~L~~gd~VeI 622 (820)
|..|||+.|.-.++|++||+|.|
T Consensus 111 gt~VNG~~i~~~~~L~~GD~I~~ 133 (154)
T 4ejq_A 111 DTYVNGKKVTEPSILRSGNRIIM 133 (154)
T ss_dssp CEEETTEECCSCEECCTTCEEEE
T ss_pred ceEECCEEcCCceECCCCCEEEE
Confidence 68899999977778999999998
No 66
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=35.51 E-value=28 Score=31.59 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=20.8
Q ss_pred EEEECCEecCCCccCCCCCeEEEE
Q 003428 600 AAKVNGNLVSPTHVLANAEVVEII 623 (820)
Q Consensus 600 ~akVNG~~v~l~~~L~~gd~VeIl 623 (820)
|..|||+.+.-.++|++||+|.|=
T Consensus 81 gt~vNg~~i~~~~~L~~GD~I~iG 104 (120)
T 1wln_A 81 ETYVDGQRISETTMLQSGMRLQFG 104 (120)
T ss_dssp CEEETSCBCSSCEEECTTCEEEET
T ss_pred CEEECCEEcCCCEECCCCCEEEEC
Confidence 778999999866689999999883
No 67
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=31.94 E-value=28 Score=34.83 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=26.2
Q ss_pred CCcccchHHHHHHHHHH--------c--CCCHH-HHHHHhhccccc
Q 003428 168 GEPFIIHPVEVARILGE--------L--ELDWE-SIAAGLLHDTVE 202 (820)
Q Consensus 168 GePYi~Hpl~VA~ILae--------l--glD~~-tIiAALLHDvVE 202 (820)
+++-..|...||.+..- + ++|.+ ++.+|||||+.|
T Consensus 29 ~EnVaeHS~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E 74 (201)
T 2paq_A 29 TENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASE 74 (201)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTH
T ss_pred CccHHHHHHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhccccc
Confidence 56777899999876432 2 46765 578999999976
No 68
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=30.27 E-value=46 Score=30.96 Aligned_cols=25 Identities=8% Similarity=0.182 Sum_probs=21.4
Q ss_pred EEEECCEecCC--CccCCCCCeEEEEe
Q 003428 600 AAKVNGNLVSP--THVLANAEVVEIIT 624 (820)
Q Consensus 600 ~akVNG~~v~l--~~~L~~gd~VeIlT 624 (820)
|..|||+.+.- ..+|++||+|.|=.
T Consensus 76 GT~vNg~~l~~~~~~~L~~GD~I~lG~ 102 (138)
T 2pie_A 76 GVWLNRARLEPLRVYSIHQGDYIQLGV 102 (138)
T ss_dssp CEEETTEECCTTCCEECCTTCEEEESC
T ss_pred CeEECCEEcCCCCcEECCCCCEEEECC
Confidence 77899999887 46799999999954
No 69
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=30.10 E-value=25 Score=38.56 Aligned_cols=33 Identities=30% Similarity=0.265 Sum_probs=25.6
Q ss_pred cccchHHHHHHHHH----HcCCCH--HHHHHHhhccccc
Q 003428 170 PFIIHPVEVARILG----ELELDW--ESIAAGLLHDTVE 202 (820)
Q Consensus 170 PYi~Hpl~VA~ILa----elglD~--~tIiAALLHDvVE 202 (820)
..+.|.+.||.+.. .+|+|. ...+||||||+-.
T Consensus 50 ~r~~Hsl~V~~~a~~ia~~~~~~~~~~~~~AaLLHDiG~ 88 (371)
T 2hek_A 50 TRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGH 88 (371)
T ss_dssp BHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTC
T ss_pred ChhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc
Confidence 45899999988763 467775 4679999999864
No 70
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=30.08 E-value=27 Score=30.06 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=27.2
Q ss_pred eeeecCCC-ceEecCCCCcHhHHHhhcccccccce
Q 003428 565 VFVFTPRG-EIKNLPKGATVVDYAYMIHTEIGNKM 598 (820)
Q Consensus 565 I~VftP~G-~i~~lP~GaT~lDfAy~Iht~lg~~~ 598 (820)
|.+.+|+| ..++.|.|.|.||.|-.-+-.+-..|
T Consensus 4 v~~~~~~g~~~~~~~~g~tlL~a~~~~gi~i~~~C 38 (95)
T 1frr_A 4 TVLKTPSGEFTLDVPEGTTILDAAEEAGYDLPFSC 38 (95)
T ss_dssp EEEEETTEEEEEEECTTCCHHHHHHHTTCCCCCSS
T ss_pred EEEEeCCCcEEEEeCCCCcHHHHHHHcCCCCCCCC
Confidence 45556999 88999999999999988776665554
No 71
>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A*
Probab=28.98 E-value=53 Score=34.67 Aligned_cols=52 Identities=21% Similarity=0.191 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhcCCccccCCcccchHHHHHHHHHHcCCCHH-HHHHHhhccc
Q 003428 149 VRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWE-SIAAGLLHDT 200 (820)
Q Consensus 149 l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILaelglD~~-tIiAALLHDv 200 (820)
|.+|+++-....+..-.....|=|.|++++|....+-|-+.+ ...+||+||.
T Consensus 77 IweA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~d~pp~dW~qLtGLiHDL 129 (289)
T 2huo_A 77 IMEAVGMLDDLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDL 129 (289)
T ss_dssp HHHHHHHGGGCCCSSCTTCCSCHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhcCCcCCccchhHHHHHHHHHHHHHHhCCCcchheeeeecccc
Confidence 566666665555555444567889999999999986676633 5678999996
No 72
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=28.31 E-value=1.5e+02 Score=24.76 Aligned_cols=61 Identities=13% Similarity=0.191 Sum_probs=41.9
Q ss_pred CeeeecCCCc-e--EecCCCCcHhHH--HhhcccccccceEEEEECCEecCCCcc-----CCCCCeEEEEe
Q 003428 564 RVFVFTPRGE-I--KNLPKGATVVDY--AYMIHTEIGNKMVAAKVNGNLVSPTHV-----LANAEVVEIIT 624 (820)
Q Consensus 564 ~I~VftP~G~-i--~~lP~GaT~lDf--Ay~Iht~lg~~~~~akVNG~~v~l~~~-----L~~gd~VeIlT 624 (820)
.|.|.+++|+ . +.+....+.-.+ ||.=...+-..-+.-..+|+.+..+.. +++||+|++.+
T Consensus 9 ~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 79 (79)
T 3a4r_A 9 RLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVWG 79 (79)
T ss_dssp EEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEEC
T ss_pred EEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEeC
Confidence 4678899995 4 445555554444 555555555556677789998887754 79999999864
No 73
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=27.76 E-value=64 Score=31.65 Aligned_cols=34 Identities=29% Similarity=0.217 Sum_probs=25.8
Q ss_pred CcccchHHHHHHH---HHH-cCCCH---H-HHHHHhhccccc
Q 003428 169 EPFIIHPVEVARI---LGE-LELDW---E-SIAAGLLHDTVE 202 (820)
Q Consensus 169 ePYi~Hpl~VA~I---Lae-lglD~---~-tIiAALLHDvVE 202 (820)
++--.|...||.+ |+. .|+|. + .+..||+||+.|
T Consensus 37 EsVAeHS~~vA~iA~~la~~~~vd~~~~~r~~~maL~HDl~E 78 (173)
T 1ynb_A 37 ESVAEHNFRAAIIAFILALKSGESVEKACKAATAALFHDLHE 78 (173)
T ss_dssp CBHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTH
T ss_pred CcHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHcchHH
Confidence 4556799999887 554 57777 4 577899999876
No 74
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=27.75 E-value=35 Score=31.67 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=20.3
Q ss_pred EEEECCEecCCCc--cCCCCCeEEE
Q 003428 600 AAKVNGNLVSPTH--VLANAEVVEI 622 (820)
Q Consensus 600 ~akVNG~~v~l~~--~L~~gd~VeI 622 (820)
|..|||+.+.... +|++||+|.|
T Consensus 95 GT~vNg~ri~~~~~~~L~~GD~I~~ 119 (130)
T 4h87_A 95 GTFLNKTRIPPRTYCRVHVGHVVRF 119 (130)
T ss_dssp CEEETTEECCTTCCEECCTTCEEEE
T ss_pred ceEECCEECCCCceeECCCCCEEEE
Confidence 7889999998765 5999999998
No 75
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=27.27 E-value=42 Score=31.57 Aligned_cols=25 Identities=8% Similarity=0.182 Sum_probs=21.2
Q ss_pred EEEECCEecCC--CccCCCCCeEEEEe
Q 003428 600 AAKVNGNLVSP--THVLANAEVVEIIT 624 (820)
Q Consensus 600 ~akVNG~~v~l--~~~L~~gd~VeIlT 624 (820)
|..|||+.+.- ..+|++||+|.|=.
T Consensus 84 GT~vNg~~i~~~~~~~L~~GD~I~iG~ 110 (145)
T 2csw_A 84 GVWLNRARLEPLRVYSIHQGDYIQLGV 110 (145)
T ss_dssp CEEESSCBCCBTCCEECCSSCCEEESC
T ss_pred CeEECCEECCCCccEECCCCCEEEECC
Confidence 77899998887 46799999999954
No 76
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=27.05 E-value=30 Score=29.07 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=19.3
Q ss_pred EEEECCEec-CCCccCCCCCeEEE
Q 003428 600 AAKVNGNLV-SPTHVLANAEVVEI 622 (820)
Q Consensus 600 ~akVNG~~v-~l~~~L~~gd~VeI 622 (820)
..+|||+.+ ...+.+..||+|+|
T Consensus 47 ~V~VNG~~v~~~~~~v~~gd~I~v 70 (79)
T 1p9k_A 47 QVKVDGAVETRKRCKIVAGQTVSF 70 (79)
T ss_dssp HHEETTBCCCCSSCCCCSSEEEEE
T ss_pred EEEECCEEecCCCCCCCCCCEEEE
Confidence 468999987 78889999998877
No 77
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=26.79 E-value=25 Score=30.70 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.5
Q ss_pred EEEECCEecCCCccCCCCCeEEE
Q 003428 600 AAKVNGNLVSPTHVLANAEVVEI 622 (820)
Q Consensus 600 ~akVNG~~v~l~~~L~~gd~VeI 622 (820)
|..|||+.+. ..+|++||+|.|
T Consensus 66 Gt~vng~~i~-~~~L~~gd~i~i 87 (100)
T 3po8_A 66 GTTVNNAPVQ-EWQLADGDVIRL 87 (100)
T ss_dssp CCEETTEECS-EEECCTTCEEEE
T ss_pred CEEECCEECc-eEECCCCCEEEE
Confidence 6789999887 678999999988
No 78
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=26.33 E-value=2.1e+02 Score=24.35 Aligned_cols=63 Identities=14% Similarity=0.142 Sum_probs=45.5
Q ss_pred CeeeecCCCce--EecCCCCcHhHHHhhcccccc-----cceEEEEECCEecCCCcc-----CCCCCeEEEEecc
Q 003428 564 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIG-----NKMVAAKVNGNLVSPTHV-----LANAEVVEIITYN 626 (820)
Q Consensus 564 ~I~VftP~G~i--~~lP~GaT~lDfAy~Iht~lg-----~~~~~akVNG~~v~l~~~-----L~~gd~VeIlT~~ 626 (820)
.|+|-+++|+. ++++...|+.|+=..|....| -.-..-..+|+...-+.. +++|++|.++-.+
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 76 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence 36788888874 577889999999888887632 334455678887654433 5799999987654
No 79
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=26.33 E-value=1.4e+02 Score=26.76 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=37.4
Q ss_pred eeeecCCCc----eEecCCCCcHhHH---Hhhccccccc------------------ceEEEEECCEecCC---CccCCC
Q 003428 565 VFVFTPRGE----IKNLPKGATVVDY---AYMIHTEIGN------------------KMVAAKVNGNLVSP---THVLAN 616 (820)
Q Consensus 565 I~VftP~G~----i~~lP~GaT~lDf---Ay~Iht~lg~------------------~~~~akVNG~~v~l---~~~L~~ 616 (820)
|.|..++|. -+. |.|+|.+|+ |+.|-.+-|. ...--+|||+.+.- +++|++
T Consensus 11 i~v~~~~~~~~~~~v~-t~g~tL~dvLk~~~~ve~e~s~~G~fITsI~G~~ad~~~~~yW~~~vng~~~~~Ga~~~~v~d 89 (101)
T 3u7z_A 11 VTVIHGDQTENVFEFD-TDAKYLGEVLESENLVDGESGEYGLFITTVDEETADDSKQQWWCITKGGEQVNTSADQTPVSD 89 (101)
T ss_dssp EEEECTTSCEEEEEEE-ECCSBHHHHHHHTTCEEEECCTTSCEEEEETTEECCGGGTEEEEEEETTEECCSCGGGCBCCT
T ss_pred EEEEcCCCceeEEEEc-CCccHHHHHHHHcCccccccccccceEEEEcCEecCCCCCCEEEEEECCEEhhhchhheEecC
Confidence 445555553 255 899999887 4444433220 12234788988765 457999
Q ss_pred CCeEEEEe
Q 003428 617 AEVVEIIT 624 (820)
Q Consensus 617 gd~VeIlT 624 (820)
||.|++--
T Consensus 90 GD~i~~~~ 97 (101)
T 3u7z_A 90 GDAFELTL 97 (101)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEE
Confidence 99999853
No 80
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=25.68 E-value=48 Score=31.95 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=20.0
Q ss_pred EEECCEec-CCCccCCCCCeEEE
Q 003428 601 AKVNGNLV-SPTHVLANAEVVEI 622 (820)
Q Consensus 601 akVNG~~v-~l~~~L~~gd~VeI 622 (820)
.+|||+.+ ..++.++.||+|+|
T Consensus 78 V~VNG~~v~~ps~~V~~gD~I~V 100 (159)
T 1c05_A 78 ILVDGSRVNIPSYRVKPGQTIAV 100 (159)
T ss_dssp EEETTEECCCSSCBCCTTCEEEE
T ss_pred EEECCEEeCcCCcEeCCCCEEEE
Confidence 68999999 58999999999988
No 81
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1
Probab=24.87 E-value=47 Score=32.77 Aligned_cols=34 Identities=35% Similarity=0.462 Sum_probs=26.1
Q ss_pred CcccchHHHHHHHH---HH------cCCCHH-HHHHHhhccccc
Q 003428 169 EPFIIHPVEVARIL---GE------LELDWE-SIAAGLLHDTVE 202 (820)
Q Consensus 169 ePYi~Hpl~VA~IL---ae------lglD~~-tIiAALLHDvVE 202 (820)
++--.|.+.||.+. +. -++|.+ .+..||+||+.|
T Consensus 36 EsvAeHS~~vA~ia~~la~~~~~~~~~~d~~r~~~~aL~HDl~E 79 (184)
T 1xx7_A 36 ESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGE 79 (184)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHcCcHH
Confidence 55568999988753 44 467886 788999999976
No 82
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=24.74 E-value=44 Score=38.61 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=38.1
Q ss_pred eecCCCceEecCCCCcHhHHHhhccccccc------------ceE--EEEECCE-ec-CCCccCCCCCeEE
Q 003428 567 VFTPRGEIKNLPKGATVVDYAYMIHTEIGN------------KMV--AAKVNGN-LV-SPTHVLANAEVVE 621 (820)
Q Consensus 567 VftP~G~i~~lP~GaT~lDfAy~Iht~lg~------------~~~--~akVNG~-~v-~l~~~L~~gd~Ve 621 (820)
-|+++|..+++|.|.|.||.|..++-.+-. .|- .+.|||+ ++ .=.+++.+|.+|+
T Consensus 3 ~~~ing~~v~v~~g~tiL~a~~~~gi~ip~lC~~~~~~~~~G~Cg~C~V~v~g~~~~~aC~t~v~~gm~V~ 73 (574)
T 3c8y_A 3 TIIINGVQFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEVEGTGLVTACDTLIEDGMIIN 73 (574)
T ss_dssp EEEETTEEEEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEETTTEEEEGGGCBCCTTCEEE
T ss_pred EEEECCEEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCcccCCCCEEEeCCCcccccCCCCcccceeEE
Confidence 478999999999999999999887542211 121 4788997 33 2245677776554
No 83
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=24.61 E-value=1.6e+02 Score=25.23 Aligned_cols=63 Identities=13% Similarity=0.176 Sum_probs=46.1
Q ss_pred CeeeecCCCc--eEecCCCCcHhHHHhhccccccc--ceEEEEECCEecCCCcc-----CCCCCeEEEEecc
Q 003428 564 RVFVFTPRGE--IKNLPKGATVVDYAYMIHTEIGN--KMVAAKVNGNLVSPTHV-----LANAEVVEIITYN 626 (820)
Q Consensus 564 ~I~VftP~G~--i~~lP~GaT~lDfAy~Iht~lg~--~~~~akVNG~~v~l~~~-----L~~gd~VeIlT~~ 626 (820)
.|+|-+++|+ .++++...|+.|+--.|....|- .-..-..+|+...-+.. +++|++|.++...
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~ 73 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 3778899987 46788899999998888766553 33455568887654444 5799999988753
No 84
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=24.33 E-value=49 Score=33.37 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=20.4
Q ss_pred EEECCEecC-CCccCCCCCeEEEE
Q 003428 601 AKVNGNLVS-PTHVLANAEVVEII 623 (820)
Q Consensus 601 akVNG~~v~-l~~~L~~gd~VeIl 623 (820)
.+|||+.|. .++.|+.||+|+|-
T Consensus 126 V~VNG~~v~~ps~~V~~gD~I~V~ 149 (209)
T 2vqe_D 126 ITVNGRRVDLPSYRVRPGDEIAVA 149 (209)
T ss_dssp EEETTEECCCTTCBCCTTCEEEEC
T ss_pred EEECCEEeCcCCcCcCCCCEEEEc
Confidence 689999995 89999999999883
No 85
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=23.85 E-value=38 Score=34.85 Aligned_cols=32 Identities=25% Similarity=0.244 Sum_probs=23.9
Q ss_pred cchHHHHHHHHHHc----CCCHH-HHHHHhhcccccc
Q 003428 172 IIHPVEVARILGEL----ELDWE-SIAAGLLHDTVED 203 (820)
Q Consensus 172 i~Hpl~VA~ILael----glD~~-tIiAALLHDvVED 203 (820)
+.|.+.|+.....+ +.|.+ ..+||||||+.-.
T Consensus 27 ~~H~~rV~~~a~~ia~~~~~d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 27 VCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSL 63 (239)
T ss_dssp CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 68999998877543 55654 5799999999753
No 86
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=23.81 E-value=43 Score=35.71 Aligned_cols=35 Identities=26% Similarity=0.210 Sum_probs=25.0
Q ss_pred cCCccc-chHHHHHHHHH----HcCCCHH-----HHHHHhhcccc
Q 003428 167 SGEPFI-IHPVEVARILG----ELELDWE-----SIAAGLLHDTV 201 (820)
Q Consensus 167 sGePYi-~Hpl~VA~ILa----elglD~~-----tIiAALLHDvV 201 (820)
...||. .|.+.||.+.. .+|++.+ ..+||||||+=
T Consensus 162 ~~~~~~~~Hs~~Va~la~~la~~lgl~~~~~~~~l~~aaLLHDIG 206 (328)
T 3tm8_A 162 NTDKTISHHGVTVSTLSIALAQKLGITDPKKTQLLTLGALLHDYG 206 (328)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTGG
T ss_pred hcCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHhcCC
Confidence 445665 69999987753 4688643 44699999984
No 87
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=23.47 E-value=88 Score=37.44 Aligned_cols=68 Identities=12% Similarity=0.002 Sum_probs=49.7
Q ss_pred CCCCeEEEEeccCCCCCCcCCCChhHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-----Cccccc
Q 003428 615 ANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITADTVGDFVADSGEE-----SEVEDL 689 (820)
Q Consensus 615 ~~gd~VeIlT~~~~~~~~~~~p~~~WL~~v~T~~Ar~~ir~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~f 689 (820)
+.||.|+..-... .|.+...+| ++.|++..||.+.|+. ++. +.+++|
T Consensus 579 ~~Gd~V~~~VD~~-------------------rR~~~m~~H--------TAtHLL~~ALr~vlG~-~v~q~GS~v~~d~~ 630 (739)
T 2ztg_A 579 EVGTKVKGVIDSD-------------------VRWRHMRHH--------SATHVLLYSLQKVLGN-HVWQAGARKEFSKA 630 (739)
T ss_dssp CTTCEEEEEECHH-------------------HHHHHHHHH--------HHHHHHHHHHHHHHCT-TCCEEECCSCCSSC
T ss_pred CCCCEEEEEEcHH-------------------HHHHHHHHH--------HHHHHHHHHHHHhcCC-cEEecCcEEcCCcE
Confidence 5789888865431 144455555 8999999999999875 222 246899
Q ss_pred cccccC----CchhHHHHHHHHhhc
Q 003428 690 SDGSKQ----DKPLWEKILMNVVQM 710 (820)
Q Consensus 690 y~~i~~----~~~~~~~i~~~~~~~ 710 (820)
|+|+.. ++.++++|++.|.+.
T Consensus 631 r~DF~~~~~lT~edL~~IE~~vNei 655 (739)
T 2ztg_A 631 RLDVTHFRRPSEEEIKEIEMLANRE 655 (739)
T ss_dssp EEEEECSSCCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999954 567899999999876
No 88
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=23.39 E-value=47 Score=32.78 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.0
Q ss_pred EEECCEecCCCccCCCCCeEEE
Q 003428 601 AKVNGNLVSPTHVLANAEVVEI 622 (820)
Q Consensus 601 akVNG~~v~l~~~L~~gd~VeI 622 (820)
..|||+.|.-.+.|++||.|-+
T Consensus 142 t~VNG~~I~~~~~L~~GDrI~l 163 (184)
T 4egx_A 142 TYVNGKKVTEPSILRSGNRIIM 163 (184)
T ss_dssp EEETTEECCSCEECCTTCEEEE
T ss_pred EEEcCEEccccEEcCCCCEEEE
Confidence 5799999988889999999977
No 89
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=23.35 E-value=54 Score=28.81 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=27.4
Q ss_pred eeeecCCC--ceEecCCCCcHhHHHhhcccc-cccce
Q 003428 565 VFVFTPRG--EIKNLPKGATVVDYAYMIHTE-IGNKM 598 (820)
Q Consensus 565 I~VftP~G--~i~~lP~GaT~lDfAy~Iht~-lg~~~ 598 (820)
|.+.+|+| ..++.+.|.|.||.|..-+-. +-..|
T Consensus 3 v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C 39 (106)
T 1uwm_A 3 IIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADC 39 (106)
T ss_dssp EEEECTTCCEEEEECCTTSBHHHHHHTTTCTTCCCTT
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCcccCC
Confidence 44558999 889999999999999887766 65555
No 90
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=22.78 E-value=1.7e+02 Score=23.51 Aligned_cols=62 Identities=13% Similarity=0.127 Sum_probs=44.3
Q ss_pred CeeeecCCCce---Ee-cCCCCcHhHHHhhccccccc--ceEEEEECCEecCCCcc-----CCCCCeEEEEec
Q 003428 564 RVFVFTPRGEI---KN-LPKGATVVDYAYMIHTEIGN--KMVAAKVNGNLVSPTHV-----LANAEVVEIITY 625 (820)
Q Consensus 564 ~I~VftP~G~i---~~-lP~GaT~lDfAy~Iht~lg~--~~~~akVNG~~v~l~~~-----L~~gd~VeIlT~ 625 (820)
.|+|-+++|+. ++ ++...|+.|+=..|+...|- .-..-..+|+...-+.. +++|++|.++-.
T Consensus 4 ~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r 76 (78)
T 2faz_A 4 WIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVR 76 (78)
T ss_dssp EEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred EEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 47788888864 56 88999999998888776653 23344568887654433 568999988753
No 91
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=22.74 E-value=37 Score=30.54 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=19.6
Q ss_pred EEEECCEecCCCccCCCCCeEEE
Q 003428 600 AAKVNGNLVSPTHVLANAEVVEI 622 (820)
Q Consensus 600 ~akVNG~~v~l~~~L~~gd~VeI 622 (820)
|..|||+.+. ..+|++||+|.|
T Consensus 74 Gt~vng~~i~-~~~L~~gd~i~i 95 (115)
T 2xt9_B 74 GTYVNREPVD-SAVLANGDEVQI 95 (115)
T ss_dssp CEEETTEECS-EEEECTTCEEEE
T ss_pred CeEECCEEcc-eEECCCCCEEEE
Confidence 6789999988 678999999988
No 92
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.46 E-value=96 Score=25.18 Aligned_cols=61 Identities=8% Similarity=0.186 Sum_probs=42.8
Q ss_pred CeeeecCCCce--EecCCCCcHhHHHhhccccccc--ceEEEEECCEecCCCcc-----CCCCCeEEEEe
Q 003428 564 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGN--KMVAAKVNGNLVSPTHV-----LANAEVVEIIT 624 (820)
Q Consensus 564 ~I~VftP~G~i--~~lP~GaT~lDfAy~Iht~lg~--~~~~akVNG~~v~l~~~-----L~~gd~VeIlT 624 (820)
.|+|-+++|+. ++++...|+.|+--.|+...|- .-..-..+|+...-+.. +++|++|.++-
T Consensus 9 ~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~ 78 (81)
T 2dzi_A 9 QLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVV 78 (81)
T ss_dssp EEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEEC
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 36677888874 6789999999998888766553 23344567887654444 46888887764
No 93
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=22.14 E-value=67 Score=28.38 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=29.2
Q ss_pred CeeeecCCCc--eEecCCCCcHhHHHhhcccc-cccceE
Q 003428 564 RVFVFTPRGE--IKNLPKGATVVDYAYMIHTE-IGNKMV 599 (820)
Q Consensus 564 ~I~VftP~G~--i~~lP~GaT~lDfAy~Iht~-lg~~~~ 599 (820)
.|.+.+|+|. .++.+.|.|.+|.|..-+-. +-..|-
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~~gi~~i~~~C~ 40 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCG 40 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHHHTTCTTCCCTTC
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCCCcCCC
Confidence 4778899997 67889999999999887776 666664
No 94
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=22.08 E-value=58 Score=28.60 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=27.7
Q ss_pred eeeecCCC--ceEecCCCCcHhHHHhhcccc-cccce
Q 003428 565 VFVFTPRG--EIKNLPKGATVVDYAYMIHTE-IGNKM 598 (820)
Q Consensus 565 I~VftP~G--~i~~lP~GaT~lDfAy~Iht~-lg~~~ 598 (820)
|.+.+|+| ..++.+.|.|.||.|..-+-. +-..|
T Consensus 3 V~~~~~~g~~~~~~~~~g~tlLeaa~~~gi~~i~~~C 39 (106)
T 1xlq_A 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDC 39 (106)
T ss_dssp EEEECTTSCEEEEECCTTCBHHHHHHHTTCTTSCCTT
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCCcCC
Confidence 55558999 889999999999999887776 65555
No 95
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=21.78 E-value=37 Score=32.12 Aligned_cols=24 Identities=21% Similarity=0.283 Sum_probs=20.5
Q ss_pred EEEECCEecCC-CccCCCCCeEEEE
Q 003428 600 AAKVNGNLVSP-THVLANAEVVEII 623 (820)
Q Consensus 600 ~akVNG~~v~l-~~~L~~gd~VeIl 623 (820)
|..|||+.+.- ..+|++||+|.|-
T Consensus 88 GT~VNg~~i~~~~~~L~~GD~I~lG 112 (151)
T 2jqj_A 88 GTFINGNRLVKKDYILKNGDRIVFG 112 (151)
T ss_dssp CEEETTEECCSSCEEECSSEEEEET
T ss_pred CeEECCEEcCCCceECCCCCEEEEC
Confidence 67899999987 4789999999884
No 96
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=21.74 E-value=50 Score=29.20 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=27.4
Q ss_pred eeeecCCCc--eEecCCCCcHhHHHhhcccccc--cceE
Q 003428 565 VFVFTPRGE--IKNLPKGATVVDYAYMIHTEIG--NKMV 599 (820)
Q Consensus 565 I~VftP~G~--i~~lP~GaT~lDfAy~Iht~lg--~~~~ 599 (820)
|.+.+|+|. .++.+.|.|.+|.|..-.-.+- ..|-
T Consensus 9 V~~~~~~g~~~~v~~~~g~tLL~aa~~~gi~i~~~~~Cg 47 (108)
T 2bt6_A 9 VHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACE 47 (108)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHTTCCCTTTTTTS
T ss_pred EEEECCCCCEEEEEECCCChHHHHHHHcCCCCCcccCCC
Confidence 555569998 8899999999999988666665 5553
No 97
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=21.38 E-value=2.1e+02 Score=23.42 Aligned_cols=63 Identities=13% Similarity=0.070 Sum_probs=44.6
Q ss_pred CeeeecCCCce--EecCCCCcHhHHHhhcccc-----cccceEEEEECCEecCCCcc-----CCCCCeEEEEecc
Q 003428 564 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTE-----IGNKMVAAKVNGNLVSPTHV-----LANAEVVEIITYN 626 (820)
Q Consensus 564 ~I~VftP~G~i--~~lP~GaT~lDfAy~Iht~-----lg~~~~~akVNG~~v~l~~~-----L~~gd~VeIlT~~ 626 (820)
.|+|-+++|+. ++++...|+.|+=..|+.. +--.-..-..+|+...-+.. +++|++|.++-.+
T Consensus 7 ~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 7 TITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp EEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred EEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 36777888864 5778899999998888875 22334455668887654433 5799999987754
No 98
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=21.19 E-value=39 Score=31.91 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.0
Q ss_pred EEEECCEecCC--CccCCCCCeEEEEe
Q 003428 600 AAKVNGNLVSP--THVLANAEVVEIIT 624 (820)
Q Consensus 600 ~akVNG~~v~l--~~~L~~gd~VeIlT 624 (820)
|..|||+.+.. .++|++||+|.|-.
T Consensus 104 GT~VNg~~i~~~~~~~L~~GD~I~lG~ 130 (149)
T 1gxc_A 104 GTFVNTELVGKGKRRPLNNNSEIALSL 130 (149)
T ss_dssp CEEETTEECCTTCEEECCTTEEEEESS
T ss_pred CeEECCEECCCCCeEECCCCCEEEECC
Confidence 78999999885 56799999998844
No 99
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=21.18 E-value=54 Score=28.21 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=26.6
Q ss_pred eeeecCCC-ceEecCCCCcHhHHHhhcccccccce
Q 003428 565 VFVFTPRG-EIKNLPKGATVVDYAYMIHTEIGNKM 598 (820)
Q Consensus 565 I~VftP~G-~i~~lP~GaT~lDfAy~Iht~lg~~~ 598 (820)
|.+..|+| ..++.+.|.|.||.|-..+-.+-..|
T Consensus 3 v~~~~~~g~~~~~~~~g~tlL~a~~~~gi~i~~~C 37 (94)
T 1awd_A 3 VTLKTPSGEETIECPEDTYILDAAEEAGLDLPYSC 37 (94)
T ss_dssp EEEEETTEEEEEECCTTSCHHHHHHHTTCCCCCSS
T ss_pred EEEEeCCCcEEEEECCCCcHHHHHHHcCCCCCcCC
Confidence 55556888 78999999999999988766555444
No 100
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=21.09 E-value=2.3e+02 Score=22.90 Aligned_cols=61 Identities=13% Similarity=0.084 Sum_probs=44.5
Q ss_pred CeeeecCCCce--EecCCCCcHhHHHhhccccccc--ceEEEEECCEecCCCcc-----CCCCCeEEEEe
Q 003428 564 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGN--KMVAAKVNGNLVSPTHV-----LANAEVVEIIT 624 (820)
Q Consensus 564 ~I~VftP~G~i--~~lP~GaT~lDfAy~Iht~lg~--~~~~akVNG~~v~l~~~-----L~~gd~VeIlT 624 (820)
.|+|-+++|+. ++++...|+.|+=..|....|- .-..-..+|+...-+.. +++|++|.++-
T Consensus 6 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~ 75 (79)
T 3phx_B 6 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNL 75 (79)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 47899999975 4778899999998888766553 23345568877665544 57899998865
No 101
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=20.96 E-value=35 Score=31.63 Aligned_cols=22 Identities=18% Similarity=0.462 Sum_probs=19.5
Q ss_pred EEEECCEecCCCccCCCCCeEEE
Q 003428 600 AAKVNGNLVSPTHVLANAEVVEI 622 (820)
Q Consensus 600 ~akVNG~~v~l~~~L~~gd~VeI 622 (820)
|..|||+.+.- .+|++||+|.|
T Consensus 83 GT~vNg~~i~~-~~L~~GD~I~i 104 (131)
T 3hx1_A 83 GLMINGKKVQE-HIIQTGDEIVM 104 (131)
T ss_dssp CEEETTEEESE-EECCTTCEEEC
T ss_pred ceEECCEEeEe-EECCCCCEEEE
Confidence 77899998875 88999999987
No 102
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=20.33 E-value=2.4e+02 Score=23.73 Aligned_cols=62 Identities=13% Similarity=0.189 Sum_probs=45.6
Q ss_pred CeeeecCCCce--EecCCCCcHhHHHhhcccccccc--eEEEEECCEecCCCcc-----CCCCCeEEEEec
Q 003428 564 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGNK--MVAAKVNGNLVSPTHV-----LANAEVVEIITY 625 (820)
Q Consensus 564 ~I~VftP~G~i--~~lP~GaT~lDfAy~Iht~lg~~--~~~akVNG~~v~l~~~-----L~~gd~VeIlT~ 625 (820)
.|+|-+++|+. ++++...|+.|+=..|+...|-. -..-..+|+...-+.. +++|++|.++..
T Consensus 3 ~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r 73 (96)
T 3k9o_B 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 73 (96)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 47788888875 56888999999988887766532 2345568887655443 688999999864
No 103
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=20.03 E-value=2.2e+02 Score=23.06 Aligned_cols=62 Identities=13% Similarity=0.151 Sum_probs=44.7
Q ss_pred CeeeecCCCce--EecCCCCcHhHHHhhccccccc--ceEEEEECCEecCCCcc-----CCCCCeEEEEec
Q 003428 564 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGN--KMVAAKVNGNLVSPTHV-----LANAEVVEIITY 625 (820)
Q Consensus 564 ~I~VftP~G~i--~~lP~GaT~lDfAy~Iht~lg~--~~~~akVNG~~v~l~~~-----L~~gd~VeIlT~ 625 (820)
.|+|-+++|+. ++++...|+.|+=..|....|- .-..-..+|+...-+.. +++|++|.++-.
T Consensus 5 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r 75 (85)
T 3mtn_B 5 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLR 75 (85)
T ss_dssp EEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECC
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEE
Confidence 47788888875 5678899999998887765543 23345568887765544 588999998753
Done!