BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003431
         (820 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O23144|PPI1_ARATH Proton pump-interactor 1 OS=Arabidopsis thaliana GN=PPI1 PE=1 SV=2
          Length = 612

 Score = 67.0 bits (162), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 95/169 (56%), Gaps = 11/169 (6%)

Query: 652 YFLVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDE 711
           ++LVK   Y D  ++ ++  A  ++++  ++R  + D ++  RA   E  + L+   S+ 
Sbjct: 79  FYLVKYRSYADPKIKAKLDLADKELEKLNKARTGVLDKLRAKRAERSELFDLLDPLKSER 138

Query: 712 RSARESLKSKRQEIDSVQSRINMMKN---------AI--SVDDIDGSIRNMEHRIAHETL 760
           +        KR+E++ +Q  +  +++         AI  S ++++  I + ++RI HE++
Sbjct: 139 KGFNTMFDEKRKEMEPLQQALGKLRSNDGGSARGPAICSSEEELNSMIYSYQYRIQHESI 198

Query: 761 PLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVV 809
           PL EEKQI++EI+ L+  R+++ ++     +++ +  QKD I+ ++K++
Sbjct: 199 PLTEEKQILKEIRLLEGTRDKVIANAAMRAKIKESMGQKDDIQGQVKLM 247


>sp|B3H4K7|PPI2_ARATH Proton pump-interactor 2 OS=Arabidopsis thaliana GN=PPI2 PE=2 SV=1
          Length = 589

 Score = 37.7 bits (86), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 77/161 (47%), Gaps = 11/161 (6%)

Query: 622 CETQTSTPEGSTVDASESRNIGVE----VVKQPF-YFLVKVPRYDDENLREQIKAAQSKV 676
           C+  T T E  TV + +S   G        ++PF ++ VK P YDD  ++ +I  A  ++
Sbjct: 34  CDVSTVTTEDGTVFSGDSSPGGATEEDFPEEKPFSFYFVKQPAYDDPEIKAKIDEAGHEI 93

Query: 677 DEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736
           +   + R  + +  ++ +A       ++++ +S     R  ++ K+ E D++   +  ++
Sbjct: 94  NRYNKDRIVVSNAQESEKAEILSLFGQMKSLVSKSEGYRVVIEEKKMEFDALHESLRNLR 153

Query: 737 NA------ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIRE 771
            +       S +++D  I    ++I H ++  +EE  +++E
Sbjct: 154 CSTSDQLCFSKEELDHLIYIAHYQIEHGSIGFEEEDWVLKE 194


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.306    0.126    0.338 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 305,324,640
Number of Sequences: 539616
Number of extensions: 13864935
Number of successful extensions: 34952
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 750
Number of HSP's that attempted gapping in prelim test: 33160
Number of HSP's gapped (non-prelim): 2155
length of query: 820
length of database: 191,569,459
effective HSP length: 126
effective length of query: 694
effective length of database: 123,577,843
effective search space: 85763023042
effective search space used: 85763023042
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 66 (30.0 bits)