Query 003431
Match_columns 820
No_of_seqs 91 out of 93
Neff 2.4
Searched_HMMs 46136
Date Thu Mar 28 23:18:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003431.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003431hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1340 Uncharacterized archae 99.1 1.6E-08 3.5E-13 106.0 20.5 149 663-811 9-186 (294)
2 PRK11637 AmiB activator; Provi 97.0 0.066 1.4E-06 58.0 19.2 53 663-715 43-95 (428)
3 COG1340 Uncharacterized archae 96.9 0.05 1.1E-06 58.3 17.0 70 667-736 6-75 (294)
4 PF07888 CALCOCO1: Calcium bin 96.8 0.06 1.3E-06 61.6 17.5 109 665-775 141-249 (546)
5 PRK11637 AmiB activator; Provi 96.7 0.09 1.9E-06 57.0 17.6 74 662-735 49-122 (428)
6 TIGR02169 SMC_prok_A chromosom 96.4 0.13 2.7E-06 60.0 17.6 18 766-783 954-971 (1164)
7 PF08317 Spc7: Spc7 kinetochor 96.3 0.1 2.2E-06 55.2 14.4 44 564-614 52-95 (325)
8 KOG0250 DNA repair protein RAD 96.2 0.15 3.3E-06 62.0 16.8 155 658-815 652-808 (1074)
9 COG1579 Zn-ribbon protein, pos 96.2 0.18 3.8E-06 52.8 15.2 70 667-736 10-79 (239)
10 smart00787 Spc7 Spc7 kinetocho 95.8 0.22 4.7E-06 53.4 14.4 30 566-595 49-78 (312)
11 PRK03918 chromosome segregatio 95.6 0.5 1.1E-05 54.7 17.5 17 740-756 681-697 (880)
12 KOG1029 Endocytic adaptor prot 95.5 0.21 4.5E-06 59.5 14.0 26 740-769 487-512 (1118)
13 PHA02562 46 endonuclease subun 95.5 0.42 9.2E-06 52.3 15.7 19 665-683 172-190 (562)
14 PRK02224 chromosome segregatio 95.5 0.54 1.2E-05 54.7 17.2 14 801-814 738-751 (880)
15 TIGR00606 rad50 rad50. This fa 95.2 0.53 1.2E-05 58.0 16.9 73 739-814 822-898 (1311)
16 PF05667 DUF812: Protein of un 95.2 0.78 1.7E-05 53.2 16.9 70 746-815 408-479 (594)
17 PF10186 Atg14: UV radiation r 95.1 0.57 1.2E-05 46.8 13.8 46 691-736 59-104 (302)
18 PHA02562 46 endonuclease subun 95.0 1.2 2.6E-05 48.9 17.1 14 665-678 179-192 (562)
19 KOG1029 Endocytic adaptor prot 95.0 0.52 1.1E-05 56.4 14.9 93 665-759 435-527 (1118)
20 PF04156 IncA: IncA protein; 94.7 1.4 3.1E-05 42.5 15.1 63 672-734 79-141 (191)
21 COG1579 Zn-ribbon protein, pos 94.7 1.2 2.7E-05 46.7 15.5 13 743-755 70-82 (239)
22 PRK03918 chromosome segregatio 94.7 1.5 3.3E-05 50.8 17.8 52 664-715 166-220 (880)
23 PF12128 DUF3584: Protein of u 94.5 1 2.2E-05 55.3 16.6 76 660-735 600-675 (1201)
24 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.4 2.4 5.1E-05 39.9 15.4 116 666-783 2-118 (132)
25 TIGR00606 rad50 rad50. This fa 94.2 1.5 3.3E-05 54.1 17.4 65 739-814 1028-1092(1311)
26 PF07888 CALCOCO1: Calcium bin 94.2 1.9 4E-05 50.0 16.8 74 663-736 146-219 (546)
27 PF09789 DUF2353: Uncharacteri 94.1 5.2 0.00011 43.8 19.1 52 763-814 126-178 (319)
28 COG1196 Smc Chromosome segrega 94.1 2.1 4.6E-05 52.4 18.0 28 787-814 380-407 (1163)
29 PF07106 TBPIP: Tat binding pr 94.0 0.66 1.4E-05 44.7 11.1 88 652-747 58-150 (169)
30 PF09726 Macoilin: Transmembra 94.0 1.1 2.3E-05 53.0 14.8 84 700-783 543-632 (697)
31 COG1196 Smc Chromosome segrega 93.9 1.9 4.2E-05 52.7 17.2 26 791-816 985-1010(1163)
32 COG4942 Membrane-bound metallo 93.9 3.2 7E-05 46.9 17.4 68 667-734 38-105 (420)
33 PF10146 zf-C4H2: Zinc finger- 93.7 0.78 1.7E-05 47.6 11.7 73 665-737 30-102 (230)
34 TIGR03185 DNA_S_dndD DNA sulfu 93.7 1.8 4E-05 49.6 15.7 124 660-786 370-496 (650)
35 PF08317 Spc7: Spc7 kinetochor 93.7 4.4 9.5E-05 43.2 17.4 19 767-785 255-273 (325)
36 PRK09039 hypothetical protein; 93.6 2.7 6E-05 45.4 15.9 10 636-645 12-21 (343)
37 COG2433 Uncharacterized conser 93.4 0.34 7.4E-06 56.4 9.3 77 695-771 422-499 (652)
38 PF15290 Syntaphilin: Golgi-lo 93.4 1.2 2.7E-05 48.1 12.8 61 717-789 83-143 (305)
39 KOG0161 Myosin class II heavy 93.4 2.2 4.8E-05 55.3 17.0 70 742-813 1009-1078(1930)
40 COG5185 HEC1 Protein involved 93.4 4.8 0.0001 46.5 17.7 67 745-814 350-417 (622)
41 PF10186 Atg14: UV radiation r 93.2 5 0.00011 40.3 16.1 72 665-736 18-97 (302)
42 PF04156 IncA: IncA protein; 93.1 4 8.6E-05 39.5 14.6 69 668-736 82-150 (191)
43 PF09726 Macoilin: Transmembra 92.9 1.1 2.3E-05 53.0 12.5 52 686-737 430-481 (697)
44 KOG0996 Structural maintenance 92.6 3.5 7.6E-05 51.4 16.4 33 442-479 170-202 (1293)
45 PRK01156 chromosome segregatio 92.6 4.6 0.0001 47.6 17.0 39 698-736 412-450 (895)
46 PF15233 SYCE1: Synaptonemal c 92.3 2.6 5.7E-05 41.4 12.1 116 665-783 4-132 (134)
47 KOG0612 Rho-associated, coiled 92.1 5.8 0.00013 49.7 17.4 39 387-425 243-281 (1317)
48 PF12128 DUF3584: Protein of u 92.0 4.2 9E-05 50.3 16.4 29 767-795 782-810 (1201)
49 PF00038 Filament: Intermediat 91.9 12 0.00027 38.6 17.3 53 663-715 50-102 (312)
50 PF12718 Tropomyosin_1: Tropom 91.9 6.9 0.00015 37.9 14.5 96 664-772 11-106 (143)
51 PF15619 Lebercilin: Ciliary p 91.8 13 0.00027 38.0 16.9 62 696-757 69-136 (194)
52 smart00787 Spc7 Spc7 kinetocho 91.8 9.2 0.0002 41.4 16.8 36 768-812 251-286 (312)
53 KOG0964 Structural maintenance 91.7 3.9 8.4E-05 50.3 15.1 16 763-778 390-405 (1200)
54 KOG0995 Centromere-associated 91.7 7.1 0.00015 45.7 16.6 69 744-814 313-381 (581)
55 PF12325 TMF_TATA_bd: TATA ele 91.6 2.1 4.5E-05 40.9 10.5 72 665-736 28-109 (120)
56 PF07106 TBPIP: Tat binding pr 91.6 2.3 5E-05 41.0 11.0 53 701-753 71-123 (169)
57 KOG0977 Nuclear envelope prote 91.5 7.3 0.00016 45.4 16.5 72 665-736 118-189 (546)
58 PRK09039 hypothetical protein; 91.4 3.4 7.4E-05 44.7 13.2 31 706-736 120-150 (343)
59 PF13851 GAS: Growth-arrest sp 91.3 18 0.0004 36.7 17.9 131 668-814 28-160 (201)
60 KOG0161 Myosin class II heavy 91.3 5.5 0.00012 52.0 16.7 121 664-784 1608-1737(1930)
61 COG5185 HEC1 Protein involved 91.3 7 0.00015 45.3 15.8 42 739-780 462-504 (622)
62 COG0419 SbcC ATPase involved i 91.2 7.6 0.00017 46.4 17.0 14 743-756 658-671 (908)
63 KOG0999 Microtubule-associated 91.2 13 0.00028 43.9 17.9 73 663-736 4-77 (772)
64 PRK04863 mukB cell division pr 91.0 3.7 8E-05 52.3 14.8 34 739-772 435-468 (1486)
65 TIGR01843 type_I_hlyD type I s 90.8 24 0.00051 37.1 18.8 16 662-677 76-91 (423)
66 KOG0250 DNA repair protein RAD 90.7 7.4 0.00016 48.3 16.3 16 740-755 373-388 (1074)
67 PF10168 Nup88: Nuclear pore c 90.5 11 0.00023 45.0 17.0 55 676-730 553-610 (717)
68 TIGR03007 pepcterm_ChnLen poly 90.4 17 0.00037 40.0 17.5 20 739-758 275-294 (498)
69 COG3883 Uncharacterized protei 90.2 23 0.0005 38.2 17.7 62 669-730 33-94 (265)
70 PF04111 APG6: Autophagy prote 90.2 2.3 4.9E-05 45.6 10.5 15 764-778 93-107 (314)
71 PF11932 DUF3450: Protein of u 90.2 13 0.00028 38.1 15.4 77 686-765 47-127 (251)
72 PF09789 DUF2353: Uncharacteri 90.2 3.3 7.2E-05 45.2 11.8 75 695-771 126-217 (319)
73 COG4942 Membrane-bound metallo 90.1 11 0.00023 42.9 15.9 129 663-800 41-195 (420)
74 PF10168 Nup88: Nuclear pore c 90.1 16 0.00035 43.6 18.0 17 465-481 373-389 (717)
75 PRK01156 chromosome segregatio 90.0 11 0.00024 44.5 16.7 27 695-721 197-223 (895)
76 PF03962 Mnd1: Mnd1 family; I 90.0 2.6 5.6E-05 42.3 10.0 65 655-719 57-127 (188)
77 TIGR01843 type_I_hlyD type I s 89.9 28 0.00061 36.6 18.7 11 801-811 257-267 (423)
78 PF02403 Seryl_tRNA_N: Seryl-t 89.9 1.8 3.9E-05 38.7 8.1 35 686-720 27-61 (108)
79 PLN02939 transferase, transfer 89.8 18 0.00039 44.9 18.5 54 660-713 128-181 (977)
80 PRK04778 septation ring format 89.7 8.3 0.00018 44.1 14.9 43 741-783 450-496 (569)
81 PF09304 Cortex-I_coil: Cortex 89.4 6.7 0.00014 37.5 11.6 84 662-745 11-94 (107)
82 PF05384 DegS: Sensor protein 89.4 25 0.00054 35.3 16.7 134 672-815 4-140 (159)
83 KOG0995 Centromere-associated 89.4 14 0.0003 43.5 16.3 134 662-800 427-566 (581)
84 PF05667 DUF812: Protein of un 89.2 23 0.00049 41.6 18.1 37 744-783 424-460 (594)
85 PF04111 APG6: Autophagy prote 89.2 5.8 0.00013 42.6 12.6 72 663-734 39-110 (314)
86 COG4026 Uncharacterized protei 89.2 3 6.4E-05 44.5 10.1 70 682-753 136-205 (290)
87 PF14197 Cep57_CLD_2: Centroso 89.1 5.4 0.00012 34.9 10.1 66 664-729 2-67 (69)
88 PRK10884 SH3 domain-containing 88.6 5 0.00011 41.2 11.1 35 702-736 132-166 (206)
89 PRK04778 septation ring format 88.5 13 0.00027 42.7 15.3 42 740-781 419-466 (569)
90 PF15290 Syntaphilin: Golgi-lo 88.5 3.7 7.9E-05 44.7 10.4 73 675-749 69-148 (305)
91 KOG0288 WD40 repeat protein Ti 88.3 12 0.00025 42.8 14.4 43 694-736 26-68 (459)
92 KOG2391 Vacuolar sorting prote 87.9 9.1 0.0002 42.7 13.1 111 664-789 222-355 (365)
93 TIGR01005 eps_transp_fam exopo 87.9 13 0.00028 43.4 15.1 13 662-674 165-177 (754)
94 KOG4643 Uncharacterized coiled 87.8 14 0.00031 45.9 15.7 115 664-778 412-541 (1195)
95 KOG4673 Transcription factor T 87.8 25 0.00054 42.6 17.2 90 698-793 405-494 (961)
96 PF00261 Tropomyosin: Tropomyo 87.7 31 0.00066 35.4 16.1 49 665-713 62-110 (237)
97 COG2433 Uncharacterized conser 87.5 6.5 0.00014 46.4 12.3 94 662-759 417-517 (652)
98 PF08647 BRE1: BRE1 E3 ubiquit 87.4 14 0.00029 33.6 11.9 92 672-777 1-94 (96)
99 KOG0999 Microtubule-associated 87.2 19 0.00042 42.6 15.7 142 652-814 104-253 (772)
100 PF10473 CENP-F_leu_zip: Leuci 87.2 32 0.0007 33.9 16.0 92 662-755 19-110 (140)
101 PF08826 DMPK_coil: DMPK coile 87.0 8.1 0.00018 33.5 9.7 58 673-730 3-60 (61)
102 KOG4673 Transcription factor T 87.0 22 0.00047 43.0 16.1 40 660-699 402-441 (961)
103 TIGR02971 heterocyst_DevB ABC 86.9 41 0.0009 34.9 16.8 44 704-747 92-140 (327)
104 PRK15422 septal ring assembly 86.9 5 0.00011 36.6 8.7 60 663-722 7-73 (79)
105 TIGR03185 DNA_S_dndD DNA sulfu 86.8 59 0.0013 37.8 19.4 48 662-709 204-251 (650)
106 PF10174 Cast: RIM-binding pro 86.7 17 0.00036 44.1 15.4 139 665-810 285-456 (775)
107 PF14662 CCDC155: Coiled-coil 86.5 39 0.00084 35.2 15.8 105 665-769 41-154 (193)
108 KOG0804 Cytoplasmic Zn-finger 86.4 6.8 0.00015 44.9 11.5 51 709-759 347-402 (493)
109 PF00261 Tropomyosin: Tropomyo 86.3 7.2 0.00016 39.9 10.7 49 667-715 1-49 (237)
110 TIGR01069 mutS2 MutS2 family p 86.1 12 0.00025 44.8 13.8 31 743-777 580-610 (771)
111 PF11932 DUF3450: Protein of u 85.5 26 0.00057 35.9 14.3 102 671-772 39-157 (251)
112 PF13166 AAA_13: AAA domain 85.5 24 0.00053 40.4 15.4 26 697-722 324-349 (712)
113 KOG0996 Structural maintenance 85.4 30 0.00064 43.8 16.8 25 741-765 442-466 (1293)
114 PF13949 ALIX_LYPXL_bnd: ALIX 85.4 47 0.001 34.0 18.2 19 766-784 147-165 (296)
115 COG0419 SbcC ATPase involved i 85.4 50 0.0011 39.8 18.5 43 740-783 601-643 (908)
116 TIGR03007 pepcterm_ChnLen poly 85.3 19 0.00041 39.6 14.0 40 742-781 250-293 (498)
117 TIGR03794 NHPM_micro_HlyD NHPM 85.3 46 0.001 36.2 16.7 67 661-727 90-164 (421)
118 KOG0964 Structural maintenance 85.0 22 0.00047 44.4 15.2 75 662-736 680-761 (1200)
119 smart00502 BBC B-Box C-termina 84.9 26 0.00056 30.6 14.7 47 727-775 76-124 (127)
120 TIGR03017 EpsF chain length de 84.8 27 0.00058 37.8 14.7 18 739-756 282-299 (444)
121 PF06005 DUF904: Protein of un 84.3 16 0.00035 32.3 10.5 58 664-728 8-65 (72)
122 PF09730 BicD: Microtubule-ass 84.2 51 0.0011 39.9 17.7 134 665-815 39-181 (717)
123 PRK10698 phage shock protein P 84.2 22 0.00048 36.6 13.1 17 742-758 169-185 (222)
124 TIGR01000 bacteriocin_acc bact 84.1 49 0.0011 36.6 16.6 32 660-691 90-121 (457)
125 KOG0962 DNA repair protein RAD 84.0 15 0.00032 46.7 13.7 117 658-782 163-280 (1294)
126 COG4372 Uncharacterized protei 83.9 59 0.0013 37.4 16.9 27 660-686 74-100 (499)
127 PF11559 ADIP: Afadin- and alp 83.8 22 0.00048 33.8 12.0 75 662-736 33-107 (151)
128 KOG0933 Structural maintenance 83.7 17 0.00036 45.4 13.6 20 488-511 612-631 (1174)
129 TIGR01005 eps_transp_fam exopo 83.6 28 0.0006 40.7 15.0 15 665-679 206-220 (754)
130 TIGR00634 recN DNA repair prot 83.4 36 0.00078 38.9 15.5 89 694-782 272-365 (563)
131 KOG2911 Uncharacterized conser 83.3 26 0.00055 40.2 14.1 148 654-818 217-365 (439)
132 PF13870 DUF4201: Domain of un 83.3 14 0.0003 36.0 10.7 72 664-735 53-124 (177)
133 PF07889 DUF1664: Protein of u 82.9 29 0.00064 33.7 12.5 94 656-755 26-119 (126)
134 PLN03229 acetyl-coenzyme A car 82.9 47 0.001 40.4 16.6 79 724-815 650-730 (762)
135 PF09728 Taxilin: Myosin-like 82.8 66 0.0014 34.9 16.4 69 666-734 49-118 (309)
136 PF10146 zf-C4H2: Zinc finger- 82.7 48 0.001 34.9 14.9 65 668-732 2-69 (230)
137 PF06632 XRCC4: DNA double-str 82.7 20 0.00043 39.6 12.7 82 655-736 116-207 (342)
138 PF04012 PspA_IM30: PspA/IM30 82.7 36 0.00078 34.0 13.5 18 740-757 166-183 (221)
139 PF07926 TPR_MLP1_2: TPR/MLP1/ 82.6 31 0.00068 32.6 12.4 74 663-736 6-93 (132)
140 PF03962 Mnd1: Mnd1 family; I 82.6 11 0.00023 38.1 9.9 67 665-732 81-151 (188)
141 PF15066 CAGE1: Cancer-associa 82.4 36 0.00078 39.6 14.8 42 695-736 383-424 (527)
142 PF03961 DUF342: Protein of un 82.3 12 0.00027 41.3 11.2 81 654-735 322-408 (451)
143 KOG4809 Rab6 GTPase-interactin 82.1 56 0.0012 38.8 16.4 72 661-732 325-403 (654)
144 TIGR00414 serS seryl-tRNA synt 82.1 7.1 0.00015 43.3 9.2 63 665-727 35-101 (418)
145 PLN02678 seryl-tRNA synthetase 81.9 6.8 0.00015 44.3 9.1 68 665-732 38-108 (448)
146 PRK12704 phosphodiesterase; Pr 81.7 57 0.0012 37.7 16.3 28 742-769 131-159 (520)
147 PF12718 Tropomyosin_1: Tropom 81.5 32 0.00069 33.5 12.3 27 729-755 97-124 (143)
148 PRK05431 seryl-tRNA synthetase 81.5 7.1 0.00015 43.4 9.0 69 664-732 32-103 (425)
149 TIGR01000 bacteriocin_acc bact 81.2 95 0.0021 34.5 18.7 17 665-681 102-118 (457)
150 PRK10698 phage shock protein P 81.1 12 0.00026 38.5 9.8 14 800-813 204-217 (222)
151 PF02403 Seryl_tRNA_N: Seryl-t 81.1 12 0.00025 33.6 8.7 35 701-735 28-62 (108)
152 KOG2751 Beclin-like protein [S 81.0 45 0.00097 38.4 14.8 35 739-783 176-210 (447)
153 KOG4302 Microtubule-associated 80.9 57 0.0012 39.2 16.3 38 699-736 100-137 (660)
154 PF06005 DUF904: Protein of un 80.8 29 0.00064 30.7 10.8 50 684-733 14-63 (72)
155 PF14662 CCDC155: Coiled-coil 80.7 25 0.00055 36.5 11.9 64 665-728 65-128 (193)
156 PF13949 ALIX_LYPXL_bnd: ALIX 80.6 72 0.0016 32.7 16.3 147 660-812 137-284 (296)
157 COG4026 Uncharacterized protei 80.6 21 0.00045 38.4 11.5 42 695-736 135-176 (290)
158 PF04849 HAP1_N: HAP1 N-termin 80.4 76 0.0017 35.0 15.9 141 660-811 160-304 (306)
159 KOG4571 Activating transcripti 80.3 26 0.00056 38.4 12.3 52 685-736 238-289 (294)
160 PRK10884 SH3 domain-containing 80.2 19 0.0004 37.1 10.8 22 665-686 91-112 (206)
161 KOG0163 Myosin class VI heavy 79.7 18 0.00039 44.2 11.8 99 683-783 835-934 (1259)
162 KOG3091 Nuclear pore complex, 79.5 67 0.0015 37.6 15.8 47 740-786 429-482 (508)
163 COG4372 Uncharacterized protei 79.3 75 0.0016 36.6 15.8 30 691-720 98-127 (499)
164 KOG0979 Structural maintenance 79.0 36 0.00078 42.5 14.2 109 649-758 618-737 (1072)
165 PF10174 Cast: RIM-binding pro 79.0 30 0.00065 42.0 13.5 117 691-814 461-600 (775)
166 PF09738 DUF2051: Double stran 79.0 14 0.00031 40.1 10.0 148 664-814 81-243 (302)
167 KOG0612 Rho-associated, coiled 78.9 47 0.001 42.3 15.3 98 661-759 582-687 (1317)
168 KOG4603 TBP-1 interacting prot 78.9 48 0.001 34.5 13.0 88 650-745 63-155 (201)
169 KOG0971 Microtubule-associated 78.9 81 0.0017 39.6 16.8 23 104-126 2-24 (1243)
170 PF14257 DUF4349: Domain of un 78.8 2.3 5.1E-05 43.4 4.0 66 695-762 132-199 (262)
171 KOG4438 Centromere-associated 78.7 97 0.0021 35.8 16.5 101 665-772 150-267 (446)
172 TIGR02231 conserved hypothetic 78.5 14 0.0003 41.6 10.1 35 663-697 67-101 (525)
173 PF15070 GOLGA2L5: Putative go 78.5 1.1E+02 0.0024 36.4 17.6 30 685-714 33-62 (617)
174 PRK11546 zraP zinc resistance 78.3 18 0.00039 35.9 9.6 55 672-726 52-113 (143)
175 KOG0976 Rho/Rac1-interacting s 78.2 65 0.0014 39.9 15.6 15 801-815 390-404 (1265)
176 TIGR00414 serS seryl-tRNA synt 77.9 12 0.00027 41.5 9.4 30 676-705 32-61 (418)
177 PLN02320 seryl-tRNA synthetase 77.4 13 0.00028 42.9 9.7 15 697-711 102-116 (502)
178 KOG0963 Transcription factor/C 77.2 1.3E+02 0.0027 36.3 17.3 113 701-814 234-361 (629)
179 PF12252 SidE: Dot/Icm substra 77.0 17 0.00036 45.6 10.8 80 718-802 1126-1219(1439)
180 PF05701 WEMBL: Weak chloropla 76.9 79 0.0017 36.3 15.5 16 665-680 216-231 (522)
181 PF14362 DUF4407: Domain of un 76.5 83 0.0018 33.0 14.4 19 718-736 184-202 (301)
182 KOG4674 Uncharacterized conser 76.5 54 0.0012 43.3 15.3 120 659-778 1235-1368(1822)
183 COG3883 Uncharacterized protei 76.5 18 0.00039 39.0 9.7 66 667-732 38-103 (265)
184 PF05701 WEMBL: Weak chloropla 76.1 1.5E+02 0.0033 34.1 17.4 66 690-755 283-353 (522)
185 PRK00106 hypothetical protein; 76.0 1.1E+02 0.0023 36.1 16.3 27 743-769 147-174 (535)
186 KOG4643 Uncharacterized coiled 75.5 38 0.00081 42.5 13.0 8 652-659 164-171 (1195)
187 KOG1937 Uncharacterized conser 75.4 1E+02 0.0022 36.0 15.6 32 788-819 401-432 (521)
188 PF05911 DUF869: Plant protein 75.2 45 0.00097 40.6 13.5 113 687-810 637-760 (769)
189 KOG0977 Nuclear envelope prote 75.1 82 0.0018 37.2 15.1 42 756-797 203-252 (546)
190 PF14712 Snapin_Pallidin: Snap 74.9 45 0.00098 29.2 10.3 71 665-736 12-84 (92)
191 PF06160 EzrA: Septation ring 74.8 1.3E+02 0.0027 35.0 16.5 48 768-816 250-297 (560)
192 KOG4674 Uncharacterized conser 74.8 96 0.0021 41.2 16.8 28 662-689 1273-1300(1822)
193 PRK10361 DNA recombination pro 74.6 1.5E+02 0.0033 34.4 16.9 51 682-732 61-111 (475)
194 PRK10869 recombination and rep 74.6 86 0.0019 36.3 15.1 55 724-778 297-356 (553)
195 TIGR03319 YmdA_YtgF conserved 74.5 1.2E+02 0.0027 35.0 16.3 10 760-769 144-153 (514)
196 PF14915 CCDC144C: CCDC144C pr 74.3 1.3E+02 0.0029 33.4 15.5 145 663-810 34-227 (305)
197 cd00632 Prefoldin_beta Prefold 74.2 65 0.0014 29.2 11.4 28 665-692 4-31 (105)
198 COG3074 Uncharacterized protei 74.2 43 0.00092 30.6 9.9 53 663-715 7-66 (79)
199 TIGR02449 conserved hypothetic 74.0 29 0.00063 30.6 8.7 50 686-735 12-61 (65)
200 PF15294 Leu_zip: Leucine zipp 74.0 41 0.00089 36.6 11.7 46 664-709 129-174 (278)
201 TIGR02231 conserved hypothetic 73.9 33 0.00071 38.7 11.5 32 662-693 73-104 (525)
202 TIGR02977 phageshock_pspA phag 73.9 94 0.002 31.7 13.7 35 740-776 167-201 (219)
203 PF09731 Mitofilin: Mitochondr 73.7 1.7E+02 0.0036 33.5 17.0 33 664-696 255-288 (582)
204 KOG0979 Structural maintenance 73.7 55 0.0012 41.1 13.8 130 650-784 601-742 (1072)
205 PF13166 AAA_13: AAA domain 73.6 1.8E+02 0.0039 33.6 17.7 16 573-591 245-260 (712)
206 KOG3230 Vacuolar assembly/sort 73.3 15 0.00033 38.6 8.0 41 743-793 27-83 (224)
207 cd00179 SynN Syntaxin N-termin 73.1 79 0.0017 29.3 12.8 15 739-753 130-144 (151)
208 PF07889 DUF1664: Protein of u 73.0 34 0.00074 33.3 9.8 68 686-755 59-126 (126)
209 PF15254 CCDC14: Coiled-coil d 72.8 46 0.001 40.8 12.7 62 752-817 491-552 (861)
210 PF15070 GOLGA2L5: Putative go 72.7 1.3E+02 0.0029 35.8 16.3 69 664-732 164-232 (617)
211 KOG0994 Extracellular matrix g 72.7 2.1E+02 0.0046 37.1 18.3 65 672-736 1420-1484(1758)
212 PF06818 Fez1: Fez1; InterPro 72.5 57 0.0012 34.2 11.9 50 687-736 30-79 (202)
213 cd08915 V_Alix_like Protein-in 72.5 1.2E+02 0.0025 32.5 14.6 14 762-775 263-276 (342)
214 KOG0018 Structural maintenance 72.5 82 0.0018 39.9 14.9 33 782-814 418-450 (1141)
215 KOG0971 Microtubule-associated 72.3 1.2E+02 0.0027 38.1 16.1 57 660-716 318-382 (1243)
216 KOG1655 Protein involved in va 72.1 61 0.0013 34.3 11.9 86 672-757 17-105 (218)
217 PF15619 Lebercilin: Ciliary p 72.0 1.1E+02 0.0023 31.5 13.5 115 685-813 65-194 (194)
218 PF12329 TMF_DNA_bd: TATA elem 71.7 63 0.0014 28.5 10.4 58 668-732 13-70 (74)
219 PRK09841 cryptic autophosphory 71.5 39 0.00086 39.8 11.8 55 662-716 238-295 (726)
220 PRK00409 recombination and DNA 71.3 58 0.0012 39.3 13.2 10 743-752 585-594 (782)
221 PF09177 Syntaxin-6_N: Syntaxi 71.1 18 0.0004 32.4 7.1 23 663-685 8-30 (97)
222 KOG0243 Kinesin-like protein [ 71.0 1.1E+02 0.0024 38.6 15.7 22 761-782 512-533 (1041)
223 KOG0962 DNA repair protein RAD 71.0 1E+02 0.0023 39.6 15.6 47 664-710 882-928 (1294)
224 PF10498 IFT57: Intra-flagella 70.9 1.2E+02 0.0027 33.8 14.7 100 634-736 190-300 (359)
225 TIGR02680 conserved hypothetic 70.9 1.8E+02 0.0038 37.4 17.7 45 668-712 277-321 (1353)
226 PF04012 PspA_IM30: PspA/IM30 70.9 1.2E+02 0.0026 30.4 17.3 41 665-705 28-68 (221)
227 KOG1937 Uncharacterized conser 70.8 98 0.0021 36.2 14.1 110 663-782 296-422 (521)
228 cd09235 V_Alix Middle V-domain 70.8 1.6E+02 0.0035 31.9 16.0 35 740-777 241-275 (339)
229 PF12325 TMF_TATA_bd: TATA ele 70.8 1E+02 0.0022 29.8 12.3 80 664-752 20-109 (120)
230 cd00890 Prefoldin Prefoldin is 70.8 82 0.0018 28.5 11.5 29 664-692 3-31 (129)
231 PRK12705 hypothetical protein; 70.7 75 0.0016 37.0 13.5 28 742-769 119-147 (508)
232 PRK01203 prefoldin subunit alp 70.4 45 0.00098 32.7 10.0 72 665-736 12-121 (130)
233 PLN03229 acetyl-coenzyme A car 70.4 1.1E+02 0.0024 37.5 15.0 17 799-815 599-615 (762)
234 KOG4460 Nuclear pore complex, 70.2 1.9E+02 0.0042 34.8 16.5 68 698-765 605-688 (741)
235 PF05622 HOOK: HOOK protein; 69.9 1.5 3.2E-05 51.1 0.0 32 665-696 244-275 (713)
236 KOG4302 Microtubule-associated 69.8 1.1E+02 0.0024 37.0 14.8 36 701-736 159-194 (660)
237 PF07083 DUF1351: Protein of u 69.5 1.4E+02 0.0031 30.7 14.5 73 695-773 78-154 (215)
238 TIGR00237 xseA exodeoxyribonuc 69.4 1.2E+02 0.0025 34.2 14.3 107 661-783 256-362 (432)
239 PF06785 UPF0242: Uncharacteri 69.4 1.1E+02 0.0023 34.8 13.7 102 671-772 72-181 (401)
240 PF11172 DUF2959: Protein of u 69.3 69 0.0015 33.7 11.6 76 659-734 56-151 (201)
241 PF12252 SidE: Dot/Icm substra 69.2 49 0.0011 41.8 12.1 39 635-682 991-1030(1439)
242 PRK11281 hypothetical protein; 69.0 63 0.0014 40.8 13.3 27 739-765 121-147 (1113)
243 PF10234 Cluap1: Clusterin-ass 68.6 58 0.0013 35.2 11.3 52 685-736 166-217 (267)
244 PF13747 DUF4164: Domain of un 68.6 83 0.0018 28.7 10.7 69 664-732 12-83 (89)
245 PRK10476 multidrug resistance 68.4 1.1E+02 0.0023 32.5 13.2 24 660-683 79-102 (346)
246 PF10473 CENP-F_leu_zip: Leuci 68.3 85 0.0019 31.1 11.5 37 664-700 49-85 (140)
247 PF10392 COG5: Golgi transport 68.3 80 0.0017 29.9 11.0 73 664-736 37-113 (132)
248 TIGR03545 conserved hypothetic 68.2 20 0.00044 41.6 8.5 16 694-709 190-205 (555)
249 smart00502 BBC B-Box C-termina 68.1 82 0.0018 27.5 11.4 21 684-704 17-37 (127)
250 PF12329 TMF_DNA_bd: TATA elem 68.1 54 0.0012 28.9 9.2 37 699-735 30-66 (74)
251 KOG0804 Cytoplasmic Zn-finger 68.0 69 0.0015 37.3 12.3 99 686-793 359-458 (493)
252 TIGR02338 gimC_beta prefoldin, 68.0 87 0.0019 28.8 10.9 24 666-689 9-32 (110)
253 KOG4572 Predicted DNA-binding 67.7 67 0.0015 39.9 12.6 30 784-813 1060-1089(1424)
254 PF09766 FimP: Fms-interacting 67.7 1.8E+02 0.0038 32.1 15.0 66 745-817 90-156 (355)
255 PLN02320 seryl-tRNA synthetase 67.4 21 0.00046 41.3 8.4 26 679-704 98-123 (502)
256 KOG0018 Structural maintenance 67.4 58 0.0013 41.1 12.3 10 770-779 409-418 (1141)
257 KOG2218 ER to golgi transport 67.4 29 0.00062 42.0 9.6 139 668-817 33-201 (737)
258 PF15066 CAGE1: Cancer-associa 67.4 1.6E+02 0.0035 34.7 14.9 16 721-736 458-473 (527)
259 PF09755 DUF2046: Uncharacteri 67.3 92 0.002 34.6 12.6 10 761-770 189-198 (310)
260 PF08614 ATG16: Autophagy prot 67.3 13 0.00028 37.0 5.9 26 665-690 72-97 (194)
261 KOG0933 Structural maintenance 67.1 3.2E+02 0.007 35.0 18.1 62 701-762 740-810 (1174)
262 PF13514 AAA_27: AAA domain 67.0 1.8E+02 0.004 36.1 16.5 146 664-814 154-327 (1111)
263 PTZ00464 SNF-7-like protein; P 66.9 1.3E+02 0.0028 31.4 13.1 16 739-754 121-136 (211)
264 cd00176 SPEC Spectrin repeats, 66.8 1E+02 0.0023 28.2 15.1 90 667-759 40-133 (213)
265 KOG0239 Kinesin (KAR3 subfamil 66.6 1.3E+02 0.0027 36.3 14.5 66 671-736 172-254 (670)
266 PF07851 TMPIT: TMPIT-like pro 66.4 75 0.0016 35.3 11.9 68 686-754 9-76 (330)
267 PRK11546 zraP zinc resistance 66.1 21 0.00046 35.4 7.0 59 678-736 51-109 (143)
268 KOG1265 Phospholipase C [Lipid 66.1 2.4E+02 0.0052 35.7 16.7 117 683-816 1047-1176(1189)
269 PRK10929 putative mechanosensi 66.0 98 0.0021 39.2 14.0 15 660-674 23-37 (1109)
270 KOG0946 ER-Golgi vesicle-tethe 65.7 1.2E+02 0.0025 37.8 14.0 24 483-506 456-479 (970)
271 PF00038 Filament: Intermediat 65.6 1.8E+02 0.0038 30.3 18.9 95 712-815 212-308 (312)
272 PRK05658 RNA polymerase sigma 65.2 1.4E+02 0.003 35.0 14.3 34 742-775 341-374 (619)
273 COG0172 SerS Seryl-tRNA synthe 65.2 26 0.00055 40.0 8.3 72 665-736 34-109 (429)
274 KOG4657 Uncharacterized conser 65.2 80 0.0017 34.0 11.3 44 680-723 85-128 (246)
275 PRK15422 septal ring assembly 65.0 93 0.002 28.7 10.2 67 669-735 6-72 (79)
276 cd09237 V_ScBro1_like Protein- 64.9 1.4E+02 0.0029 32.5 13.3 22 715-736 249-270 (356)
277 PF09304 Cortex-I_coil: Cortex 64.8 1.4E+02 0.003 28.9 11.7 51 686-736 21-71 (107)
278 PF11559 ADIP: Afadin- and alp 64.7 1.3E+02 0.0029 28.6 13.6 72 662-733 54-125 (151)
279 COG3074 Uncharacterized protei 64.5 45 0.00097 30.5 8.0 55 670-724 7-61 (79)
280 TIGR02680 conserved hypothetic 64.5 2.9E+02 0.0063 35.6 17.8 11 669-679 222-232 (1353)
281 PF06248 Zw10: Centromere/kine 64.5 1.8E+02 0.004 33.5 15.0 113 661-784 8-140 (593)
282 PRK03947 prefoldin subunit alp 64.4 1.3E+02 0.0028 28.4 11.6 31 663-693 9-39 (140)
283 PF08581 Tup_N: Tup N-terminal 63.9 1.1E+02 0.0024 27.8 10.4 55 665-719 9-63 (79)
284 PF13851 GAS: Growth-arrest sp 63.5 1.8E+02 0.0039 29.8 15.8 30 665-694 32-61 (201)
285 TIGR00634 recN DNA repair prot 63.5 38 0.00082 38.7 9.3 63 695-757 301-364 (563)
286 PRK05431 seryl-tRNA synthetase 63.4 29 0.00063 38.7 8.3 26 679-704 33-58 (425)
287 PF07798 DUF1640: Protein of u 63.3 79 0.0017 31.3 10.4 14 743-756 124-137 (177)
288 KOG4637 Adaptor for phosphoino 63.3 1.7E+02 0.0036 33.8 13.8 45 739-783 241-295 (464)
289 PF03993 DUF349: Domain of Unk 63.2 64 0.0014 26.9 8.4 64 664-732 2-66 (77)
290 PF06160 EzrA: Septation ring 63.2 2.4E+02 0.0052 32.8 15.6 21 740-760 415-435 (560)
291 PF10481 CENP-F_N: Cenp-F N-te 63.2 75 0.0016 35.1 10.9 56 667-736 18-73 (307)
292 KOG4593 Mitotic checkpoint pro 63.1 2.5E+02 0.0055 34.3 16.0 88 695-782 119-209 (716)
293 PF14282 FlxA: FlxA-like prote 63.0 58 0.0013 30.2 8.9 58 665-722 17-78 (106)
294 TIGR02449 conserved hypothetic 63.0 70 0.0015 28.3 8.8 51 664-714 4-54 (65)
295 PRK15178 Vi polysaccharide exp 62.8 1.1E+02 0.0024 35.2 12.6 102 654-757 206-332 (434)
296 COG1382 GimC Prefoldin, chaper 62.8 89 0.0019 30.5 10.3 33 662-694 8-40 (119)
297 PF10498 IFT57: Intra-flagella 62.7 1.4E+02 0.0031 33.3 13.2 51 686-736 264-314 (359)
298 KOG2129 Uncharacterized conser 62.5 2.5E+02 0.0054 32.9 15.1 27 785-811 294-320 (552)
299 TIGR00293 prefoldin, archaeal 62.4 1.3E+02 0.0028 27.7 11.2 34 664-697 3-36 (126)
300 PRK11281 hypothetical protein; 62.1 2.6E+02 0.0056 35.7 16.6 15 799-813 322-336 (1113)
301 PF06810 Phage_GP20: Phage min 62.0 1.7E+02 0.0037 29.0 12.6 31 696-726 52-82 (155)
302 PRK06285 chorismate mutase; Pr 61.8 1.2E+02 0.0026 27.5 10.4 34 663-696 10-43 (96)
303 PRK03947 prefoldin subunit alp 61.6 81 0.0018 29.7 9.7 23 761-783 91-114 (140)
304 PF14197 Cep57_CLD_2: Centroso 61.4 57 0.0012 28.7 8.0 46 669-714 21-66 (69)
305 PF06730 FAM92: FAM92 protein; 61.3 1.8E+02 0.004 30.9 13.1 67 662-728 63-130 (219)
306 PF02344 Myc-LZ: Myc leucine z 61.2 12 0.00026 29.4 3.4 21 763-783 1-21 (32)
307 TIGR03752 conj_TIGR03752 integ 61.2 68 0.0015 37.3 10.7 15 765-779 111-125 (472)
308 PF13815 Dzip-like_N: Iguana/D 61.1 90 0.0019 29.2 9.8 67 657-730 49-115 (118)
309 PLN02678 seryl-tRNA synthetase 61.0 53 0.0011 37.5 9.8 33 674-706 33-65 (448)
310 PF12795 MscS_porin: Mechanose 60.9 1.9E+02 0.0041 29.7 12.9 31 739-769 78-108 (240)
311 KOG0976 Rho/Rac1-interacting s 60.9 1E+02 0.0022 38.3 12.4 21 761-781 230-250 (1265)
312 PRK10929 putative mechanosensi 60.8 1.6E+02 0.0034 37.5 14.5 12 801-812 304-315 (1109)
313 PF09728 Taxilin: Myosin-like 60.8 2.5E+02 0.0055 30.6 14.7 24 760-783 275-299 (309)
314 KOG0978 E3 ubiquitin ligase in 60.7 2.5E+02 0.0053 34.4 15.4 135 672-813 494-644 (698)
315 KOG2264 Exostosin EXT1L [Signa 60.4 42 0.00092 40.1 9.1 55 676-730 81-135 (907)
316 PF07798 DUF1640: Protein of u 60.4 1.7E+02 0.0036 29.1 12.0 32 743-780 117-148 (177)
317 cd09235 V_Alix Middle V-domain 60.2 2.6E+02 0.0056 30.4 16.9 17 766-782 194-210 (339)
318 PF09403 FadA: Adhesion protei 59.9 94 0.002 30.3 10.0 18 665-682 25-42 (126)
319 KOG4593 Mitotic checkpoint pro 59.9 4.1E+02 0.0088 32.7 16.8 36 775-810 260-295 (716)
320 KOG0972 Huntingtin interacting 59.0 2.5E+02 0.0054 31.7 14.0 114 664-813 238-351 (384)
321 TIGR00020 prfB peptide chain r 59.0 91 0.002 35.0 11.0 64 723-786 7-72 (364)
322 KOG1853 LIS1-interacting prote 58.6 2.9E+02 0.0064 30.6 14.5 78 701-778 90-172 (333)
323 PF13870 DUF4201: Domain of un 58.1 1.9E+02 0.0042 28.3 16.6 72 665-736 47-118 (177)
324 PTZ00464 SNF-7-like protein; P 57.9 2.4E+02 0.0052 29.5 13.1 23 775-797 126-148 (211)
325 PF08781 DP: Transcription fac 57.9 43 0.00094 33.3 7.5 41 674-714 1-41 (142)
326 PF04859 DUF641: Plant protein 57.8 37 0.0008 33.3 7.0 78 659-736 37-121 (131)
327 KOG0288 WD40 repeat protein Ti 57.8 3.7E+02 0.008 31.5 15.5 59 662-720 8-66 (459)
328 cd09238 V_Alix_like_1 Protein- 57.6 2.9E+02 0.0062 30.1 15.0 72 661-736 189-260 (339)
329 PF09738 DUF2051: Double stran 57.5 1.3E+02 0.0028 33.1 11.6 29 774-802 141-169 (302)
330 KOG0810 SNARE protein Syntaxin 57.3 1.8E+02 0.0039 31.9 12.6 71 701-773 129-202 (297)
331 TIGR03545 conserved hypothetic 57.0 60 0.0013 38.0 9.6 20 696-715 220-239 (555)
332 PF10234 Cluap1: Clusterin-ass 56.9 1.5E+02 0.0032 32.2 11.8 62 676-737 185-247 (267)
333 PF13779 DUF4175: Domain of un 56.9 1.2E+02 0.0025 37.4 12.2 73 739-813 535-608 (820)
334 PF05008 V-SNARE: Vesicle tran 56.8 61 0.0013 27.6 7.4 51 682-732 22-77 (79)
335 KOG4005 Transcription factor X 56.5 81 0.0018 34.3 9.7 83 681-765 76-158 (292)
336 PF00804 Syntaxin: Syntaxin; 56.2 1.2E+02 0.0025 25.8 9.0 66 663-728 3-71 (103)
337 PF09766 FimP: Fms-interacting 56.1 92 0.002 34.3 10.4 67 662-732 86-152 (355)
338 PF05791 Bacillus_HBL: Bacillu 56.1 91 0.002 31.2 9.5 76 681-756 103-180 (184)
339 cd09237 V_ScBro1_like Protein- 55.6 2.8E+02 0.0061 30.1 13.8 27 667-693 201-227 (356)
340 PF04849 HAP1_N: HAP1 N-termin 55.5 84 0.0018 34.7 9.9 72 665-736 211-282 (306)
341 PRK00578 prfB peptide chain re 55.5 1.1E+02 0.0024 34.3 11.0 58 723-780 7-66 (367)
342 PF05622 HOOK: HOOK protein; 55.4 3.9 8.5E-05 47.7 0.0 40 659-698 185-224 (713)
343 KOG3915 Transcription regulato 55.2 1E+02 0.0022 36.3 10.7 37 696-732 539-579 (641)
344 PRK12595 bifunctional 3-deoxy- 55.1 80 0.0017 35.0 9.7 114 662-777 6-143 (360)
345 PF14523 Syntaxin_2: Syntaxin- 55.0 1.4E+02 0.0031 26.1 9.6 14 662-675 28-41 (102)
346 PF04065 Not3: Not1 N-terminal 55.0 63 0.0014 34.2 8.6 29 659-687 33-62 (233)
347 KOG0810 SNARE protein Syntaxin 54.9 1E+02 0.0022 33.8 10.3 19 664-682 44-62 (297)
348 PF10267 Tmemb_cc2: Predicted 54.8 2.2E+02 0.0048 32.4 13.2 94 684-809 215-317 (395)
349 PF05557 MAD: Mitotic checkpoi 54.8 4 8.8E-05 47.6 0.0 77 654-730 55-142 (722)
350 PF05911 DUF869: Plant protein 54.8 2.8E+02 0.006 34.2 14.8 14 769-782 189-202 (769)
351 PRK13729 conjugal transfer pil 54.7 24 0.00051 40.8 5.9 53 666-718 68-120 (475)
352 KOG2991 Splicing regulator [RN 54.4 2.9E+02 0.0062 30.8 13.3 103 682-784 129-306 (330)
353 PF08826 DMPK_coil: DMPK coile 54.4 87 0.0019 27.4 7.9 45 672-716 16-60 (61)
354 PRK08475 F0F1 ATP synthase sub 54.3 2.2E+02 0.0048 28.1 11.7 28 685-712 57-84 (167)
355 KOG4677 Golgi integral membran 54.2 2.1E+02 0.0046 33.7 13.0 71 604-678 120-197 (554)
356 PF01920 Prefoldin_2: Prefoldi 54.0 1.5E+02 0.0033 25.9 10.8 37 700-736 3-39 (106)
357 cd07624 BAR_SNX7_30 The Bin/Am 54.0 2.5E+02 0.0054 28.3 14.5 53 653-705 7-59 (200)
358 KOG0239 Kinesin (KAR3 subfamil 53.9 1E+02 0.0023 36.9 11.1 75 662-736 236-313 (670)
359 PF15450 DUF4631: Domain of un 53.9 3.1E+02 0.0068 32.6 14.4 20 739-758 358-377 (531)
360 PRK00286 xseA exodeoxyribonucl 53.8 2.9E+02 0.0063 30.6 13.8 17 661-677 261-277 (438)
361 PF08614 ATG16: Autophagy prot 53.7 1.5E+02 0.0031 29.7 10.5 76 661-736 82-157 (194)
362 PRK09343 prefoldin subunit bet 53.7 1.4E+02 0.003 28.4 9.8 25 691-715 10-34 (121)
363 PRK10803 tol-pal system protei 53.6 82 0.0018 33.2 9.2 49 698-751 57-105 (263)
364 TIGR03017 EpsF chain length de 53.5 2.1E+02 0.0045 31.2 12.4 39 698-736 257-295 (444)
365 TIGR01541 tape_meas_lam_C phag 53.5 3.2E+02 0.0068 30.3 13.8 31 743-773 94-125 (332)
366 COG1842 PspA Phage shock prote 52.8 3E+02 0.0066 29.0 17.1 17 794-810 163-179 (225)
367 PF11180 DUF2968: Protein of u 52.8 2E+02 0.0043 30.2 11.5 63 694-758 125-187 (192)
368 cd09234 V_HD-PTP_like Protein- 52.6 3.4E+02 0.0073 29.5 14.8 85 661-753 185-272 (337)
369 PF07227 DUF1423: Protein of u 52.5 2E+02 0.0043 33.5 12.4 75 712-795 367-441 (446)
370 PF11221 Med21: Subunit 21 of 52.5 81 0.0017 30.5 8.3 74 662-735 64-137 (144)
371 PTZ00121 MAEBL; Provisional 52.4 4E+02 0.0086 35.7 15.8 25 757-781 1239-1263(2084)
372 KOG0980 Actin-binding protein 52.1 6E+02 0.013 32.3 17.0 134 663-808 413-547 (980)
373 TIGR01730 RND_mfp RND family e 52.0 1E+02 0.0023 31.1 9.3 77 659-735 56-135 (322)
374 PRK03598 putative efflux pump 52.0 3.1E+02 0.0067 28.9 13.4 24 660-683 74-97 (331)
375 PRK11519 tyrosine kinase; Prov 51.9 1.8E+02 0.0039 34.5 12.5 55 662-716 238-295 (719)
376 PRK10246 exonuclease subunit S 51.7 5.8E+02 0.013 32.0 18.8 9 442-450 506-514 (1047)
377 PRK10361 DNA recombination pro 51.4 3.4E+02 0.0073 31.8 14.1 15 797-811 165-179 (475)
378 PF10211 Ax_dynein_light: Axon 51.4 2.8E+02 0.0061 28.2 14.8 21 763-783 163-183 (189)
379 TIGR03752 conj_TIGR03752 integ 51.3 1.2E+02 0.0027 35.3 10.7 42 664-705 63-104 (472)
380 KOG4196 bZIP transcription fac 51.3 1.2E+02 0.0026 30.4 9.2 73 658-730 22-116 (135)
381 cd09236 V_AnPalA_UmRIM20_like 51.0 3.7E+02 0.008 29.4 15.0 74 663-736 188-274 (353)
382 KOG0963 Transcription factor/C 50.8 2.2E+02 0.0049 34.3 12.8 17 762-778 382-398 (629)
383 PRK05771 V-type ATP synthase s 50.8 1.3E+02 0.0028 35.1 11.0 42 654-695 202-243 (646)
384 PF04912 Dynamitin: Dynamitin 50.8 1.3E+02 0.0028 33.1 10.5 21 663-683 264-284 (388)
385 TIGR01801 CM_A chorismate muta 50.8 1.2E+02 0.0027 28.1 8.9 33 663-695 7-39 (102)
386 PHA03011 hypothetical protein; 50.6 91 0.002 30.3 8.0 83 654-736 22-112 (120)
387 PRK09343 prefoldin subunit bet 50.4 2.3E+02 0.005 26.9 11.5 6 748-753 87-92 (121)
388 PRK15136 multidrug efflux syst 50.4 3.8E+02 0.0083 29.5 14.9 20 660-679 92-111 (390)
389 PF10805 DUF2730: Protein of u 50.3 1E+02 0.0022 28.6 8.3 52 702-755 42-95 (106)
390 TIGR02302 aProt_lowcomp conser 50.0 1.6E+02 0.0036 36.4 12.0 73 739-813 565-643 (851)
391 PF13801 Metal_resist: Heavy-m 49.2 68 0.0015 27.5 6.6 21 716-736 87-107 (125)
392 PRK14143 heat shock protein Gr 49.1 2.4E+02 0.0052 30.1 11.7 40 666-705 66-105 (238)
393 PF15397 DUF4618: Domain of un 48.7 3.9E+02 0.0085 29.1 14.1 11 782-792 185-195 (258)
394 PRK06800 fliH flagellar assemb 48.6 1.3E+02 0.0028 31.9 9.5 65 661-725 39-103 (228)
395 PF02601 Exonuc_VII_L: Exonucl 48.5 3.5E+02 0.0077 28.5 14.7 16 717-732 192-207 (319)
396 PF05008 V-SNARE: Vesicle tran 48.5 1.7E+02 0.0037 24.9 10.6 64 656-719 14-78 (79)
397 PF03670 UPF0184: Uncharacteri 47.8 92 0.002 28.9 7.4 47 675-721 27-73 (83)
398 PF02388 FemAB: FemAB family; 47.4 64 0.0014 35.6 7.6 29 651-679 232-261 (406)
399 PF05791 Bacillus_HBL: Bacillu 47.3 3.1E+02 0.0067 27.5 13.6 24 713-736 114-137 (184)
400 PF05761 5_nucleotid: 5' nucle 47.0 61 0.0013 37.0 7.5 64 669-734 324-387 (448)
401 PF04380 BMFP: Membrane fusoge 47.0 1.3E+02 0.0028 26.8 8.0 32 721-754 48-79 (79)
402 PF05816 TelA: Toxic anion res 47.0 4.1E+02 0.009 28.9 14.0 163 655-817 37-220 (333)
403 PRK13455 F0F1 ATP synthase sub 47.0 3E+02 0.0065 27.2 11.7 31 685-715 62-92 (184)
404 KOG2150 CCR4-NOT transcription 46.8 1.4E+02 0.003 35.6 10.4 101 655-756 29-158 (575)
405 PF12777 MT: Microtubule-bindi 46.8 1.1E+02 0.0024 33.1 9.1 14 665-678 219-232 (344)
406 PF12711 Kinesin-relat_1: Kine 46.7 65 0.0014 29.9 6.3 64 745-813 2-86 (86)
407 KOG3647 Predicted coiled-coil 46.7 1.8E+02 0.0038 32.4 10.4 52 685-736 109-160 (338)
408 PF08647 BRE1: BRE1 E3 ubiquit 46.6 2.3E+02 0.005 25.9 11.2 62 670-731 20-81 (96)
409 COG4192 Signal transduction hi 46.5 6E+02 0.013 30.6 15.8 132 665-797 60-215 (673)
410 PF04778 LMP: LMP repeated reg 46.5 3.5E+02 0.0075 27.9 14.1 141 662-816 13-155 (157)
411 TIGR01805 CM_mono_grmpos monof 46.5 1.6E+02 0.0035 25.7 8.5 34 663-696 2-35 (81)
412 PF13514 AAA_27: AAA domain 46.4 6.9E+02 0.015 31.3 18.5 30 683-712 675-704 (1111)
413 PF05266 DUF724: Protein of un 46.4 2.1E+02 0.0047 29.3 10.6 17 740-756 167-183 (190)
414 PRK05560 DNA gyrase subunit A; 46.4 3E+02 0.0066 33.6 13.4 52 755-812 422-473 (805)
415 PF05600 DUF773: Protein of un 46.2 1.5E+02 0.0032 34.5 10.4 111 654-764 118-239 (507)
416 KOG0244 Kinesin-like protein [ 46.2 1.7E+02 0.0037 36.6 11.3 20 765-784 581-600 (913)
417 PF14943 MRP-S26: Mitochondria 46.2 2.6E+02 0.0056 28.5 10.9 14 737-750 138-151 (170)
418 PF04977 DivIC: Septum formati 46.2 1E+02 0.0022 25.7 6.9 44 704-749 19-62 (80)
419 PRK09174 F0F1 ATP synthase sub 46.0 3.4E+02 0.0073 28.0 11.9 15 742-756 145-159 (204)
420 cd07595 BAR_RhoGAP_Rich-like T 45.8 1.9E+02 0.0041 30.6 10.3 95 665-759 116-232 (244)
421 PF03961 DUF342: Protein of un 45.7 78 0.0017 35.3 8.0 66 663-728 337-408 (451)
422 PRK14162 heat shock protein Gr 45.6 3.1E+02 0.0067 28.5 11.6 48 658-705 30-77 (194)
423 PRK12704 phosphodiesterase; Pr 45.6 5.6E+02 0.012 30.0 18.6 8 667-674 31-38 (520)
424 COG3096 MukB Uncharacterized p 45.5 7.5E+02 0.016 31.4 17.6 102 654-756 772-903 (1480)
425 KOG3091 Nuclear pore complex, 45.5 6E+02 0.013 30.3 17.1 30 739-772 411-440 (508)
426 PF08581 Tup_N: Tup N-terminal 45.3 1.6E+02 0.0034 26.8 8.3 50 687-736 3-52 (79)
427 KOG0982 Centrosomal protein Nu 45.3 5.8E+02 0.013 30.1 15.5 145 662-814 217-384 (502)
428 COG3264 Small-conductance mech 45.1 2.6E+02 0.0055 34.9 12.5 15 803-817 173-187 (835)
429 KOG0994 Extracellular matrix g 45.1 8.8E+02 0.019 32.1 17.6 22 79-100 733-754 (1758)
430 PRK10803 tol-pal system protei 45.1 1.7E+02 0.0036 31.0 9.9 66 665-730 38-103 (263)
431 TIGR00998 8a0101 efflux pump m 45.1 3.8E+02 0.0082 27.9 15.7 79 660-747 73-151 (334)
432 PF03357 Snf7: Snf7; InterPro 44.8 2.7E+02 0.0058 26.1 11.0 26 665-690 6-31 (171)
433 PF02994 Transposase_22: L1 tr 44.8 31 0.00068 38.0 4.8 127 657-786 52-188 (370)
434 KOG4572 Predicted DNA-binding 44.7 3.5E+02 0.0075 34.2 13.3 65 746-810 995-1075(1424)
435 PF05546 She9_MDM33: She9 / Md 44.6 2E+02 0.0043 30.5 10.1 78 664-746 13-93 (207)
436 PRK13460 F0F1 ATP synthase sub 44.5 3.2E+02 0.0069 26.9 11.7 37 682-718 48-84 (173)
437 PF05597 Phasin: Poly(hydroxya 44.5 1.4E+02 0.0029 29.4 8.4 30 727-756 95-126 (132)
438 KOG4438 Centromere-associated 44.2 5.9E+02 0.013 29.9 14.6 22 665-686 178-199 (446)
439 PF03938 OmpH: Outer membrane 44.1 2.8E+02 0.0061 26.1 13.2 36 714-749 48-83 (158)
440 PRK11519 tyrosine kinase; Prov 44.1 1.9E+02 0.0042 34.3 11.2 43 660-702 253-295 (719)
441 KOG0978 E3 ubiquitin ligase in 44.0 6.1E+02 0.013 31.2 15.2 110 661-770 424-551 (698)
442 PF03904 DUF334: Domain of unk 44.0 4.5E+02 0.0098 28.5 14.3 66 671-736 40-110 (230)
443 PRK09841 cryptic autophosphory 43.9 5.3E+02 0.012 30.8 14.7 43 660-702 253-295 (726)
444 PF10158 LOH1CR12: Tumour supp 43.8 1.6E+02 0.0035 28.7 8.8 52 685-736 46-100 (131)
445 PF05529 Bap31: B-cell recepto 43.6 3.4E+02 0.0074 26.9 12.4 37 763-812 154-190 (192)
446 PRK11820 hypothetical protein; 43.4 1.9E+02 0.0041 31.4 10.1 67 659-725 121-193 (288)
447 cd08915 V_Alix_like Protein-in 43.4 4.5E+02 0.0097 28.3 14.6 18 766-783 196-213 (342)
448 PF08580 KAR9: Yeast cortical 43.3 5.1E+02 0.011 31.5 14.5 27 695-721 242-268 (683)
449 COG4985 ABC-type phosphate tra 43.3 1.9E+02 0.004 31.7 9.8 41 696-736 187-241 (289)
450 PRK07248 hypothetical protein; 43.1 2.4E+02 0.0051 25.0 9.4 34 663-696 4-37 (87)
451 KOG0240 Kinesin (SMY1 subfamil 42.9 2.5E+02 0.0054 33.8 11.6 35 386-420 179-213 (607)
452 PRK06569 F0F1 ATP synthase sub 42.6 2.1E+02 0.0046 28.9 9.6 107 651-770 23-132 (155)
453 PF05700 BCAS2: Breast carcino 42.5 2.2E+02 0.0049 29.2 10.1 66 665-730 148-217 (221)
454 KOG4360 Uncharacterized coiled 42.4 6.9E+02 0.015 30.1 15.5 17 722-738 288-304 (596)
455 PF10205 KLRAQ: Predicted coil 42.3 3.2E+02 0.007 26.3 10.3 65 664-728 9-73 (102)
456 TIGR01807 CM_P2 chorismate mut 42.0 59 0.0013 28.1 5.1 34 663-696 2-35 (76)
457 TIGR02338 gimC_beta prefoldin, 42.0 1.7E+02 0.0037 27.0 8.3 16 697-712 12-27 (110)
458 PF07058 Myosin_HC-like: Myosi 41.8 5.7E+02 0.012 29.0 16.1 95 709-813 59-159 (351)
459 TIGR01010 BexC_CtrB_KpsE polys 41.7 4.8E+02 0.01 28.1 17.5 64 650-716 130-198 (362)
460 PF05130 FlgN: FlgN protein; 41.6 2.5E+02 0.0055 24.9 10.7 27 763-789 44-70 (143)
461 PF05010 TACC: Transforming ac 41.6 4.4E+02 0.0096 27.7 13.6 41 675-715 70-110 (207)
462 PF13600 DUF4140: N-terminal d 41.6 70 0.0015 28.6 5.6 42 657-698 60-101 (104)
463 PF03148 Tektin: Tektin family 41.5 5.4E+02 0.012 28.7 16.7 31 666-696 207-237 (384)
464 PRK14011 prefoldin subunit alp 41.5 3.7E+02 0.008 26.7 11.2 28 666-693 16-43 (144)
465 KOG2307 Low density lipoprotei 41.5 5.2E+02 0.011 31.5 13.7 44 739-782 166-211 (705)
466 cd00584 Prefoldin_alpha Prefol 41.3 2.9E+02 0.0063 25.5 11.5 20 665-684 4-23 (129)
467 TIGR01791 CM_archaeal chorisma 41.3 2.4E+02 0.0052 24.6 9.8 34 663-696 2-35 (83)
468 PF10475 DUF2450: Protein of u 41.3 4.6E+02 0.01 27.8 15.7 23 693-715 72-94 (291)
469 PRK07857 hypothetical protein; 41.0 68 0.0015 30.6 5.7 37 661-697 29-65 (106)
470 KOG0946 ER-Golgi vesicle-tethe 41.0 8.5E+02 0.018 30.9 15.7 22 700-721 676-697 (970)
471 PF11068 YlqD: YlqD protein; 40.9 2.4E+02 0.0052 27.6 9.5 35 702-736 56-90 (131)
472 smart00503 SynN Syntaxin N-ter 40.8 2.6E+02 0.0056 24.7 9.5 28 663-690 4-31 (117)
473 PF02841 GBP_C: Guanylate-bind 40.7 4.7E+02 0.01 27.8 13.7 13 664-676 187-199 (297)
474 cd07647 F-BAR_PSTPIP The F-BAR 40.7 4.3E+02 0.0092 27.2 17.4 95 711-814 122-217 (239)
475 KOG0579 Ste20-like serine/thre 40.6 4.4E+02 0.0096 32.9 13.2 52 765-817 847-898 (1187)
476 PF01486 K-box: K-box region; 40.6 2.3E+02 0.0049 25.6 8.7 64 711-778 14-83 (100)
477 PF10211 Ax_dynein_light: Axon 40.6 3E+02 0.0065 28.0 10.5 20 691-710 130-149 (189)
478 COG0497 RecN ATPase involved i 40.6 1.9E+02 0.0041 34.4 10.2 114 662-775 261-387 (557)
479 PRK14011 prefoldin subunit alp 40.4 1.7E+02 0.0038 28.9 8.6 50 649-705 77-126 (144)
480 PRK00846 hypothetical protein; 40.3 1.7E+02 0.0036 26.7 7.7 51 662-712 8-58 (77)
481 cd07666 BAR_SNX7 The Bin/Amphi 40.2 5E+02 0.011 27.9 15.6 87 699-793 136-230 (243)
482 TIGR01803 CM-like chorismate m 40.2 1.5E+02 0.0033 26.0 7.4 34 663-696 2-35 (82)
483 PRK06975 bifunctional uroporph 40.2 3.3E+02 0.0071 32.5 12.2 68 666-736 345-412 (656)
484 KOG4807 F-actin binding protei 40.1 4E+02 0.0087 31.2 12.3 95 662-756 347-480 (593)
485 cd09234 V_HD-PTP_like Protein- 40.0 5.2E+02 0.011 28.1 13.3 18 761-778 256-273 (337)
486 PF06103 DUF948: Bacterial pro 40.0 2.6E+02 0.0057 24.6 9.4 53 684-736 29-81 (90)
487 KOG1962 B-cell receptor-associ 39.9 2E+02 0.0044 30.5 9.4 37 700-736 149-185 (216)
488 PF10212 TTKRSYEDQ: Predicted 39.9 3.3E+02 0.0071 32.4 11.9 67 670-736 416-482 (518)
489 TIGR01554 major_cap_HK97 phage 39.9 1.3E+02 0.0028 32.5 8.4 60 676-735 1-60 (378)
490 PF10198 Ada3: Histone acetylt 39.7 2.6E+02 0.0057 27.3 9.5 63 661-723 34-99 (131)
491 PF03938 OmpH: Outer membrane 39.7 2.7E+02 0.0058 26.2 9.4 72 663-734 25-101 (158)
492 TIGR02894 DNA_bind_RsfA transc 39.5 2.5E+02 0.0055 28.8 9.7 66 671-736 87-152 (161)
493 PTZ00332 paraflagellar rod pro 39.5 5.4E+02 0.012 30.9 13.3 115 666-783 444-569 (589)
494 PRK06034 hypothetical protein; 39.2 1.6E+02 0.0034 32.2 8.8 67 663-729 12-92 (279)
495 PF14931 IFT20: Intraflagellar 39.0 3.7E+02 0.008 26.1 11.8 86 664-751 31-120 (120)
496 KOG0980 Actin-binding protein 39.0 9.4E+02 0.02 30.7 17.5 145 663-816 427-571 (980)
497 PRK11578 macrolide transporter 39.0 2.8E+02 0.006 29.8 10.5 78 659-736 91-185 (370)
498 PF04102 SlyX: SlyX; InterPro 39.0 1E+02 0.0022 26.7 6.0 46 663-708 7-52 (69)
499 PF00521 DNA_topoisoIV: DNA gy 39.0 4E+02 0.0086 30.0 12.1 109 672-793 305-421 (426)
500 PF06008 Laminin_I: Laminin Do 38.9 4.7E+02 0.01 27.2 16.9 151 663-813 62-243 (264)
No 1
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=99.05 E-value=1.6e-08 Score=105.96 Aligned_cols=149 Identities=18% Similarity=0.358 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI---------- 732 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL---------- 732 (820)
.++..|+..+...+..+++.|..++.++.+.+++|+++..+.+.++++.+.+|..+++..+++..|+...
T Consensus 9 ~E~e~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL 88 (294)
T COG1340 9 DELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQEL 88 (294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777778888888888888888888887777777777777777766665555444444422
Q ss_pred ----HHhh---c-----CCChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhh----
Q 003431 733 ----NMMK---N-----AISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAF---- 796 (820)
Q Consensus 733 ----~KLR---N-----ASSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViANAAmQAKIQdSL---- 796 (820)
++++ + ..+...|...|..|+|.+||..||+.+|++++++|++|++..+.+-+-.-..+++++.+
T Consensus 89 ~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~ 168 (294)
T COG1340 89 RKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEID 168 (294)
T ss_pred HHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 1 26999999999999999999999999999999999999988776664433333333333
Q ss_pred ---hhhHHHHHHHHHHHH
Q 003431 797 ---DQKDQIEEKMKVVLS 811 (820)
Q Consensus 797 ---DQKEAIQdQVKlLkK 811 (820)
..-..++++|..|.-
T Consensus 169 ~lk~~~~e~~eki~~la~ 186 (294)
T COG1340 169 ELKKKAREIHEKIQELAN 186 (294)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333345555555443
No 2
>PRK11637 AmiB activator; Provisional
Probab=96.97 E-value=0.066 Score=57.98 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSAR 715 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR 715 (820)
..++.++++++++|..+.+....+..++.....++..+..+|..+..+++.++
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~ 95 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQ 95 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666555555544444444444444444444333333333
No 3
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.88 E-value=0.05 Score=58.27 Aligned_cols=70 Identities=19% Similarity=0.310 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 667 EQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 667 AKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
.+++.++..+..+......+..+...++.+.+.|.++-+.|.++-+.++..+.+.+.+-+.+.+.++.+|
T Consensus 6 ~~~~E~e~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK 75 (294)
T COG1340 6 DKLDELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELK 75 (294)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554444444444444444444444455555555555555555555555555555556666666
No 4
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.77 E-value=0.06 Score=61.60 Aligned_cols=109 Identities=17% Similarity=0.319 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDI 744 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEI 744 (820)
+..++...+++...|.+....+-.+...++.+...+...|...+.+...++............|......|. ...++.
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~--~q~~e~ 218 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLK--EQLAEA 218 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 455555555555555555555555555555555555444444444444444333333322223332222222 122344
Q ss_pred HHHHHhhhhhhhcCCCChHHHHHHHHHHHHH
Q 003431 745 DGSIRNMEHRIAHETLPLKEEKQIIREIKQL 775 (820)
Q Consensus 745 DarIKsLEyRIQHESLSLkEEKKLLKEIKQL 775 (820)
..+|..||-.|.+=+-.+.|--+++.+++.+
T Consensus 219 ~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~ 249 (546)
T PF07888_consen 219 RQRIRELEEDIKTLTQKEKEQEKELDKLKEL 249 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555543333334444444444433
No 5
>PRK11637 AmiB activator; Provisional
Probab=96.69 E-value=0.09 Score=56.98 Aligned_cols=74 Identities=9% Similarity=0.199 Sum_probs=49.1
Q ss_pred ChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003431 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (820)
Q Consensus 662 DEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KL 735 (820)
...++.+|..++++|..++.....+..++..+..++..+..++..+..+++.+...+....+++..++..|..+
T Consensus 49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888888887777777777777777666666666666666666666665555555555555544433
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.42 E-value=0.13 Score=60.04 Aligned_cols=18 Identities=6% Similarity=0.335 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 003431 766 KQIIREIKQLKQRREQIS 783 (820)
Q Consensus 766 KKLLKEIKQLKkTREKVi 783 (820)
+.+-++|.+|++....+.
T Consensus 954 ~~l~~~l~~l~~~i~~l~ 971 (1164)
T TIGR02169 954 EDVQAELQRVEEEIRALE 971 (1164)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 456667777766555443
No 7
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.25 E-value=0.1 Score=55.25 Aligned_cols=44 Identities=23% Similarity=0.386 Sum_probs=28.0
Q ss_pred CcccceeEeeeCcccccccccccCCCccccccccccccCCCCCCCcccccc
Q 003431 564 DDKTCKKVVVNGGIKFTSEEQNDKTCPEVKENRGIQLTGGEDGDRTFQDVE 614 (820)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (820)
.+.+--.+|+.|-+++.--+.+.-.|-|++.+-. +|.+.|.+.+
T Consensus 52 ~~~sl~~~~~A~~~~~P~Lely~~~c~EL~~~I~-------egr~~~~~~E 95 (325)
T PF08317_consen 52 EPPSLEDYVVAGYCTVPMLELYQFSCRELKKYIS-------EGRQIFEEIE 95 (325)
T ss_pred CCCCHHHHHHHhccCChHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 3344445566666687778888888998876532 4555555543
No 8
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.17 E-value=0.15 Score=61.98 Aligned_cols=155 Identities=15% Similarity=0.259 Sum_probs=112.0
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q 003431 658 PRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK- 736 (820)
Q Consensus 658 PRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR- 736 (820)
|.++--.+.-.|.+|+.++..++..-..+.......+..+.++...++.|..++.+....+..++.||..|+... ...
T Consensus 652 ~~~~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~-e~~~ 730 (1074)
T KOG0250|consen 652 PGVDEFSFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTA-EEKQ 730 (1074)
T ss_pred ccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhh
Confidence 346777788888888888887776444555555555566666666666666666666666666666666666631 111
Q ss_pred -cCCChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHhhcc
Q 003431 737 -NAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSSMFS 815 (820)
Q Consensus 737 -NASSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKEL~s 815 (820)
.-++.+++-.+|+..+..|.---.++.+.|.=|.+|.... ++....|++.+.++|..+...++..+.+|.....|-|
T Consensus 731 ~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~--~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s 808 (1074)
T KOG0250|consen 731 VDISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEA--QELEEYYAAGREKLQGEISKLDALKEELKLREDKLRS 808 (1074)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 1258888999999999999888888888887777776654 3456778999999999999999999999987777766
No 9
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.15 E-value=0.18 Score=52.82 Aligned_cols=70 Identities=17% Similarity=0.223 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 667 EQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 667 AKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
-+|+.++.++..+.-.+..+...++++++++..+...+.++..+...++..+..-..+++.+++.+.+.+
T Consensus 10 ~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e 79 (239)
T COG1579 10 LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAE 79 (239)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777777777777766666665555555555544444444444444443333
No 10
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.80 E-value=0.22 Score=53.38 Aligned_cols=30 Identities=23% Similarity=0.230 Sum_probs=21.0
Q ss_pred ccceeEeeeCcccccccccccCCCcccccc
Q 003431 566 KTCKKVVVNGGIKFTSEEQNDKTCPEVKEN 595 (820)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (820)
-+---+|+.|-+.+.--|...-.|-|++.+
T Consensus 49 ~sl~~~v~A~~~~iP~LElY~~sC~EL~~~ 78 (312)
T smart00787 49 CSLDQYVVAGYCTVPLLELYQFSCKELKKY 78 (312)
T ss_pred CCHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 344456677777777777777888888765
No 11
>PRK03918 chromosome segregation protein; Provisional
Probab=95.64 E-value=0.5 Score=54.66 Aligned_cols=17 Identities=0% Similarity=0.343 Sum_probs=7.8
Q ss_pred ChHhHHHHHHhhhhhhh
Q 003431 740 SVDDIDGSIRNMEHRIA 756 (820)
Q Consensus 740 SeEEIDarIKsLEyRIQ 756 (820)
..+.+...|..|+..|+
T Consensus 681 ~~~~l~~~i~~l~~~i~ 697 (880)
T PRK03918 681 ELEELEKRREEIKKTLE 697 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 12
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=0.21 Score=59.47 Aligned_cols=26 Identities=23% Similarity=0.549 Sum_probs=13.3
Q ss_pred ChHhHHHHHHhhhhhhhcCCCChHHHHHHH
Q 003431 740 SVDDIDGSIRNMEHRIAHETLPLKEEKQII 769 (820)
Q Consensus 740 SeEEIDarIKsLEyRIQHESLSLkEEKKLL 769 (820)
...+|-++|++++.+++ -|.-||++|
T Consensus 487 ei~qlqarikE~q~kl~----~l~~Ekq~l 512 (1118)
T KOG1029|consen 487 EIDQLQARIKELQEKLQ----KLAPEKQEL 512 (1118)
T ss_pred HHHHHHHHHHHHHHHHH----hhhhHHHHH
Confidence 34444555555555543 345566655
No 13
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.52 E-value=0.42 Score=52.34 Aligned_cols=19 Identities=5% Similarity=0.170 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHhhhH
Q 003431 665 LREQIKAAQSKVDEKTRSR 683 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR 683 (820)
++.++..+++++..+....
T Consensus 172 ~k~~~~e~~~~i~~l~~~i 190 (562)
T PHA02562 172 NKDKIRELNQQIQTLDMKI 190 (562)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333333
No 14
>PRK02224 chromosome segregation protein; Provisional
Probab=95.50 E-value=0.54 Score=54.70 Aligned_cols=14 Identities=7% Similarity=0.339 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhhc
Q 003431 801 QIEEKMKVVLSSMF 814 (820)
Q Consensus 801 AIQdQVKlLkKEL~ 814 (820)
.++..+..+...||
T Consensus 738 ~~~~~~~~~~~~~~ 751 (880)
T PRK02224 738 TLERMLNETFDLVY 751 (880)
T ss_pred HHHHHHHHHHHHHc
Confidence 45555665655554
No 15
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.23 E-value=0.53 Score=57.98 Aligned_cols=73 Identities=14% Similarity=0.210 Sum_probs=49.0
Q ss_pred CChHhHHHHHHhhhhhhhcCCCC----hHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHhhc
Q 003431 739 ISVDDIDGSIRNMEHRIAHETLP----LKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSSMF 814 (820)
Q Consensus 739 SSeEEIDarIKsLEyRIQHESLS----LkEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKEL~ 814 (820)
.+.++|...|..++..+..-.-. ..+-.++-++|++|+.. +....+.+.++.+.+..+..++.++..|..++.
T Consensus 822 ~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~k---i~el~~~klkl~~~l~~r~~le~~L~el~~el~ 898 (1311)
T TIGR00606 822 RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSK---TNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQ 898 (1311)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888888777664221 22333444666666555 444567777777788888888888888776653
No 16
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.16 E-value=0.78 Score=53.18 Aligned_cols=70 Identities=14% Similarity=0.196 Sum_probs=38.6
Q ss_pred HHHHhhhhhhhcCCCChHHHHHHHHHHHH--HHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHhhcc
Q 003431 746 GSIRNMEHRIAHETLPLKEEKQIIREIKQ--LKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSSMFS 815 (820)
Q Consensus 746 arIKsLEyRIQHESLSLkEEKKLLKEIKQ--LKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKEL~s 815 (820)
.++..|.-+.+.--.||.+|.+-|++-.. -...+.++-....+|.++++...+-..-.+.++.|.++|++
T Consensus 408 ~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~ 479 (594)
T PF05667_consen 408 QRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEK 479 (594)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555556677777777765422 11123344445555555665555555555566666666653
No 17
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=95.08 E-value=0.57 Score=46.83 Aligned_cols=46 Identities=17% Similarity=0.362 Sum_probs=30.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 691 QTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 691 KAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
..++.++..+..++..|+.+....+..+..+++++..+++.|...+
T Consensus 59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~ 104 (302)
T PF10186_consen 59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRR 104 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666667776677777777777777777766666555
No 18
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.99 E-value=1.2 Score=48.90 Aligned_cols=14 Identities=36% Similarity=0.584 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 003431 665 LREQIKAAQSKVDE 678 (820)
Q Consensus 665 LKAKIDeAQkEIqK 678 (820)
++++|+.++.+|..
T Consensus 179 ~~~~i~~l~~~i~~ 192 (562)
T PHA02562 179 LNQQIQTLDMKIDH 192 (562)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444443333
No 19
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.96 E-value=0.52 Score=56.37 Aligned_cols=93 Identities=10% Similarity=0.199 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDI 744 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEI 744 (820)
++++...++.++..||....+|..+++..|.+...-...+..++-+...-+..+++++.+|+.+|+.|.+|- .-..+|
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~--~Ekq~l 512 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLA--PEKQEL 512 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHH
Confidence 788888888888888888888888888888888888888888887777777888888888888888887776 233566
Q ss_pred HHHHHhhhhhhhcCC
Q 003431 745 DGSIRNMEHRIAHET 759 (820)
Q Consensus 745 DarIKsLEyRIQHES 759 (820)
+++|+..+.-.-|.+
T Consensus 513 ~~qlkq~q~a~~~~~ 527 (1118)
T KOG1029|consen 513 NHQLKQKQSAHKETT 527 (1118)
T ss_pred HHHHHHhhhhccCcc
Confidence 677666665554444
No 20
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.74 E-value=1.4 Score=42.53 Aligned_cols=63 Identities=22% Similarity=0.364 Sum_probs=31.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 672 AQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINM 734 (820)
Q Consensus 672 AQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~K 734 (820)
++.++.+.++....+..++...+....++..++..++......+..+.....+++.+......
T Consensus 79 ~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 141 (191)
T PF04156_consen 79 LQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKE 141 (191)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444455555555555555555555555555554444555555554444433
No 21
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.70 E-value=1.2 Score=46.71 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=5.1
Q ss_pred hHHHHHHhhhhhh
Q 003431 743 DIDGSIRNMEHRI 755 (820)
Q Consensus 743 EIDarIKsLEyRI 755 (820)
++..+|+.++++|
T Consensus 70 ~~r~r~~~~e~kl 82 (239)
T COG1579 70 EIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444433
No 22
>PRK03918 chromosome segregation protein; Provisional
Probab=94.69 E-value=1.5 Score=50.76 Aligned_cols=52 Identities=19% Similarity=0.258 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003431 664 NLREQIKAAQSKVDEKTRSR---DAIRDDIQTIRASYKEYAEKLEAAISDERSAR 715 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR---~aIieEIKAKRAERsELIeQLKALRaE~RqlR 715 (820)
.++..+..+...|..+.... ..+...+..++.+..++..++..+..+...++
T Consensus 166 ~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~ 220 (880)
T PRK03918 166 NLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELR 220 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333222 22333444334334433333333333333333
No 23
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.50 E-value=1 Score=55.28 Aligned_cols=76 Identities=16% Similarity=0.358 Sum_probs=54.1
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003431 660 YDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (820)
Q Consensus 660 YDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KL 735 (820)
.+.+.|++++..++..|..++....++-..+++...++..+...+..++.+.++.+..+..-+.+...++..+...
T Consensus 600 ~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 675 (1201)
T PF12128_consen 600 ASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEA 675 (1201)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4677999999999999999888877777777777777777766666666666666665555555555555544333
No 24
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.45 E-value=2.4 Score=39.94 Aligned_cols=116 Identities=12% Similarity=0.294 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHH
Q 003431 666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDID 745 (820)
Q Consensus 666 KAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEID 745 (820)
+.+|..++.++..+...-......+...+.+........+.+...+..=-.....-.+.|..|+..+..++. ...++.
T Consensus 2 ~~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~--~~~~l~ 79 (132)
T PF07926_consen 2 ESELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQ--EINELK 79 (132)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 345556666666555555555555555555555544444444433332222222233334444444433331 222333
Q ss_pred HHHHhhhhhhhcCCCChHHHHHHH-HHHHHHHHHHHHHh
Q 003431 746 GSIRNMEHRIAHETLPLKEEKQII-REIKQLKQRREQIS 783 (820)
Q Consensus 746 arIKsLEyRIQHESLSLkEEKKLL-KEIKQLKkTREKVi 783 (820)
.........+...--+..++|..| +||..+++.++-+.
T Consensus 80 ~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 80 AEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334455555544 67888877755444
No 25
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.24 E-value=1.5 Score=54.14 Aligned_cols=65 Identities=12% Similarity=0.241 Sum_probs=41.0
Q ss_pred CChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHhhc
Q 003431 739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSSMF 814 (820)
Q Consensus 739 SSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKEL~ 814 (820)
....++...|..|+-.+..-.. -.+-+|...|...+..+.+- ....++++..+++|+..|..+|.
T Consensus 1028 ~~l~el~~eI~~l~~~~~~~~~-----~~~~~e~~~l~~~~~~l~~~------~a~l~g~~k~le~qi~~l~~eL~ 1092 (1311)
T TIGR00606 1028 NELKEVEEELKQHLKEMGQMQV-----LQMKQEHQKLEENIDLIKRN------HVLALGRQKGYEKEIKHFKKELR 1092 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhhccH-----HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHc
Confidence 3556677777777766654322 34445555555554444422 22566888899999999999994
No 26
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.22 E-value=1.9 Score=50.00 Aligned_cols=74 Identities=12% Similarity=0.284 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
+++..+..+|.+....+++....+..++..++..+.....++..|..+.+.+........+|.+.|+..+.+++
T Consensus 146 E~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~ 219 (546)
T PF07888_consen 146 EECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEAR 219 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666666666666666666666666666666666655555556666665555544
No 27
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.11 E-value=5.2 Score=43.78 Aligned_cols=52 Identities=15% Similarity=0.253 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHhhhhhHHHHHHHHHHHHhhc
Q 003431 763 KEEKQIIREIKQLKQRREQI-SSSIGEHDEVQLAFDQKDQIEEKMKVVLSSMF 814 (820)
Q Consensus 763 kEEKKLLKEIKQLKkTREKV-iANAAmQAKIQdSLDQKEAIQdQVKlLkKEL~ 814 (820)
.|--++|.++.+++..-+++ ..+.++-++.++.+-++|+.+.++-.|-.||.
T Consensus 126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn 178 (319)
T PF09789_consen 126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELN 178 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677888887777665554 35667788888999999999999998888873
No 28
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.10 E-value=2.1 Score=52.43 Aligned_cols=28 Identities=7% Similarity=0.073 Sum_probs=11.7
Q ss_pred cchhHHHHhhhhhHHHHHHHHHHHHhhc
Q 003431 787 GEHDEVQLAFDQKDQIEEKMKVVLSSMF 814 (820)
Q Consensus 787 AmQAKIQdSLDQKEAIQdQVKlLkKEL~ 814 (820)
..+.++.....+...++.++-.++.++.
T Consensus 380 ~~~~~~~~~~~~~~~~~~~l~~l~~~i~ 407 (1163)
T COG1196 380 ALREELAELEAELAEIRNELEELKREIE 407 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444443
No 29
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=94.05 E-value=0.66 Score=44.69 Aligned_cols=88 Identities=13% Similarity=0.349 Sum_probs=53.0
Q ss_pred eeEEeccCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 003431 652 YFLVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDE--RSARESLKSKRQEIDSVQ 729 (820)
Q Consensus 652 YYfVRVPRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~--RqlR~eldEKRKELdpLQ 729 (820)
+|+.....++.+. ...+..++.+|..+ .+++..++.+++.|.++|..|.+.. ..++..+.+-.+++..|.
T Consensus 58 iY~~~Q~~~~~~s-~eel~~ld~ei~~L-------~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~ 129 (169)
T PF07106_consen 58 IYFANQDELEVPS-PEELAELDAEIKEL-------REELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELE 129 (169)
T ss_pred EEeeCccccCCCC-chhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 5888888877432 23355555554433 3444455555555555555555544 355667777777788888
Q ss_pred HHHHHhhc---CCChHhHHHH
Q 003431 730 SRINMMKN---AISVDDIDGS 747 (820)
Q Consensus 730 EaL~KLRN---ASSeEEIDar 747 (820)
..|..||. ..|++++...
T Consensus 130 ~kL~~l~~~~~~vs~ee~~~~ 150 (169)
T PF07106_consen 130 EKLEKLRSGSKPVSPEEKEKL 150 (169)
T ss_pred HHHHHHHhCCCCCCHHHHHHH
Confidence 88888883 2466666643
No 30
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.02 E-value=1.1 Score=52.97 Aligned_cols=84 Identities=17% Similarity=0.284 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHH-H
Q 003431 700 YAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNA-----ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREI-K 773 (820)
Q Consensus 700 LIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNA-----SSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEI-K 773 (820)
++.+.+.|..+++.+|..+..|-+++..|.+.+..||++ ...|.|-..+..|+.+=+|=--+|..|-||=.+. .
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfs 622 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFS 622 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344555555566666666666666666666666555532 2455555566666666666666777777764443 4
Q ss_pred HHHHHHHHHh
Q 003431 774 QLKQRREQIS 783 (820)
Q Consensus 774 QLKkTREKVi 783 (820)
.|=..|.++.
T Consensus 623 aLg~akrq~e 632 (697)
T PF09726_consen 623 ALGDAKRQLE 632 (697)
T ss_pred HHHHHHHHHH
Confidence 4544554444
No 31
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.91 E-value=1.9 Score=52.73 Aligned_cols=26 Identities=8% Similarity=-0.005 Sum_probs=12.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhhccc
Q 003431 791 EVQLAFDQKDQIEEKMKVVLSSMFSS 816 (820)
Q Consensus 791 KIQdSLDQKEAIQdQVKlLkKEL~s~ 816 (820)
+..+-...++.|++.+..|++.....
T Consensus 985 ~~~dl~~a~~~l~~~i~~~d~~~~~~ 1010 (1163)
T COG1196 985 QREDLEEAKEKLLEVIEELDKEKRER 1010 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445555555555444433
No 32
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.86 E-value=3.2 Score=46.86 Aligned_cols=68 Identities=16% Similarity=0.274 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 667 EQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINM 734 (820)
Q Consensus 667 AKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~K 734 (820)
..++..+++|.++++....+..+..++...+.++...+..+..++.+....+....+.|..+...|.+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~ 105 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNA 105 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence 55666666666666666555555555555555555555555555555555444444444444443333
No 33
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=93.73 E-value=0.78 Score=47.65 Aligned_cols=73 Identities=14% Similarity=0.257 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKN 737 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRN 737 (820)
-..-|.++.++++.|.+.|..+.++|+-+.+++..+-.-++.++.+....+..+..+..|+.+|...++++|.
T Consensus 30 ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 30 EEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888899999999999999999999999999999999999999999999999999999999999999993
No 34
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.70 E-value=1.8 Score=49.64 Aligned_cols=124 Identities=11% Similarity=0.199 Sum_probs=71.8
Q ss_pred CCChHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 660 YDDENLREQIKAAQSKVD-EKTRSRDAIRDDIQTIRASYKEYAEKLEAA--ISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 660 YDDEkLKAKIDeAQkEIq-KLNQaR~aIieEIKAKRAERsELIeQLKAL--RaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
+....+. .+..+-..|. ..+....+++.++..+..++.++..+|... ..+.+.++..+.+..+++..++..++.+.
T Consensus 370 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~ 448 (650)
T TIGR03185 370 LSGSELT-QLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELL 448 (650)
T ss_pred CCHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443 4444444443 344455566666666677777666666542 34555555566666666666666665555
Q ss_pred cCCChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcc
Q 003431 737 NAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSI 786 (820)
Q Consensus 737 NASSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViANA 786 (820)
. ..+.+...|..++.++..-.....+-+++.+-|+.+++.|..+..|.
T Consensus 449 ~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 496 (650)
T TIGR03185 449 R--QLETLKEAIEALRKTLDEKTKQKINAFELERAITIADKAKKTLKEFR 496 (650)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 2 34556666666666665544445555666677777777777776544
No 35
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.68 E-value=4.4 Score=43.22 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 003431 767 QIIREIKQLKQRREQISSS 785 (820)
Q Consensus 767 KLLKEIKQLKkTREKViAN 785 (820)
++..+|+++++.+++...+
T Consensus 255 ~l~~eI~e~~~~~~~~r~~ 273 (325)
T PF08317_consen 255 ELLAEIAEAEKIREECRGW 273 (325)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 3556777777776655543
No 36
>PRK09039 hypothetical protein; Validated
Probab=93.57 E-value=2.7 Score=45.44 Aligned_cols=10 Identities=10% Similarity=-0.190 Sum_probs=5.6
Q ss_pred ccccCCCCcc
Q 003431 636 ASESRNIGVE 645 (820)
Q Consensus 636 A~Dewp~~kq 645 (820)
..+-||.=+-
T Consensus 12 ~~~~wpg~vd 21 (343)
T PRK09039 12 GVDYWPGFVD 21 (343)
T ss_pred CCCCCchHHH
Confidence 3456776443
No 37
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=93.43 E-value=0.34 Score=56.39 Aligned_cols=77 Identities=21% Similarity=0.318 Sum_probs=57.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChHhHHHHHHhhhhhhhcCCCChHHHHHHHHH
Q 003431 695 ASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK-NAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIRE 771 (820)
Q Consensus 695 AERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR-NASSeEEIDarIKsLEyRIQHESLSLkEEKKLLKE 771 (820)
.+...+..+++.|..+++.|+..+++.++++..|...|..+| ......-++.+|..++|+|..-..-|.|+|+.+.+
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~ 499 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEE 499 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456777778888888888888888888888888888887 33456667777888888887777777888765543
No 38
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=93.43 E-value=1.2 Score=48.11 Aligned_cols=61 Identities=39% Similarity=0.531 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccch
Q 003431 717 SLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEH 789 (820)
Q Consensus 717 eldEKRKELdpLQEaL~KLRNASSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViANAAmQ 789 (820)
.+..+--||..|+..|.+|| ++=|+.+..+.|-++. |+| .=+||+|||+.-+.+.++-+.+
T Consensus 83 ~l~dRetEI~eLksQL~RMr----EDWIEEECHRVEAQLA-----LKE---ARkEIkQLkQvieTmrssL~ek 143 (305)
T PF15290_consen 83 RLHDRETEIDELKSQLARMR----EDWIEEECHRVEAQLA-----LKE---ARKEIKQLKQVIETMRSSLAEK 143 (305)
T ss_pred HHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-----HHH---HHHHHHHHHHHHHHHHhhhchh
Confidence 33444456666666666666 3344445555554432 333 3346666666666555544444
No 39
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=93.40 E-value=2.2 Score=55.30 Aligned_cols=70 Identities=17% Similarity=0.301 Sum_probs=45.5
Q ss_pred HhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHhh
Q 003431 742 DDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSSM 813 (820)
Q Consensus 742 EEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKEL 813 (820)
..+.+.+..||-.|.-.--.|++|++...+.. +..|+........|..+.+.-.+++.++.+.+-...+|
T Consensus 1009 ~~l~k~~~kle~~l~~le~~le~e~~~r~e~E--k~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El 1078 (1930)
T KOG0161|consen 1009 KSLNKAKAKLEQQLDDLEVTLEREKRIRMELE--KAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESEL 1078 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777777778888999888887 44555555556666556655566666666665554444
No 40
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=93.36 E-value=4.8 Score=46.52 Aligned_cols=67 Identities=10% Similarity=0.221 Sum_probs=39.7
Q ss_pred HHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhh-hHHHHHHHHHHHHhhc
Q 003431 745 DGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQ-KDQIEEKMKVVLSSMF 814 (820)
Q Consensus 745 DarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQ-KEAIQdQVKlLkKEL~ 814 (820)
.+.|-.|.|++..--|+..+=+.+.+|=.+|.+..+++.. ...++-.++.. +=.+|+.+|.+-|.++
T Consensus 350 ~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~---~~~~L~k~V~~~~leaq~~~~slek~~~ 417 (622)
T COG5185 350 QSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINI---QSDKLTKSVKSRKLEAQGIFKSLEKTLR 417 (622)
T ss_pred HhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcc---hHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3446666677777777777666677776666666554431 12222233333 3377777777777665
No 41
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.24 E-value=5 Score=40.27 Aligned_cols=72 Identities=14% Similarity=0.313 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRA--------SYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRA--------ERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
+..++..++..|..+...+..+..++...-. ....+..++..++.+...++..+...+++++.+++.+.++|
T Consensus 18 ~~~~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~ 97 (302)
T PF10186_consen 18 VNNRLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELR 97 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667777777777777666666666433 45566666777777777777777777777777777777776
No 42
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=93.06 E-value=4 Score=39.53 Aligned_cols=69 Identities=17% Similarity=0.304 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 668 QIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 668 KIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
++..+++.+..+.+...++...+.+.......+...+..++...+.++..+..-....+.+.+.+..++
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666665555555555555555555555555555555555555555444444444444444444444
No 43
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.94 E-value=1.1 Score=52.98 Aligned_cols=52 Identities=25% Similarity=0.434 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 003431 686 IRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKN 737 (820)
Q Consensus 686 IieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRN 737 (820)
+..+|++.|..=.+|+.++-.|.+-.+.+|..+...+++.+.||..+..|-+
T Consensus 430 LraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~ 481 (697)
T PF09726_consen 430 LRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQ 481 (697)
T ss_pred HHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777777888888888887788888888888888888887777763
No 44
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.61 E-value=3.5 Score=51.36 Aligned_cols=33 Identities=27% Similarity=0.222 Sum_probs=19.1
Q ss_pred cCCCCCCccccccccccCCccccCCcccccccccccCC
Q 003431 442 RDVPGNEALVPESEVVSGSVSSIPEDVNVENVGIQHAG 479 (820)
Q Consensus 442 ~d~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~~~~~~ 479 (820)
.|-||--. |+++||-.+|-.-..-.|-+-.|..
T Consensus 170 iD~~~~~~-----E~vp~s~~~ItRtA~~~NsSkY~In 202 (1293)
T KOG0996|consen 170 IDKPGGTY-----EVVPDSEFTITRTAFRDNSSKYYIN 202 (1293)
T ss_pred eccCCCce-----eecCCCeeEEEehhhhCCCceEeEC
Confidence 46555432 7888876666655555555554443
No 45
>PRK01156 chromosome segregation protein; Provisional
Probab=92.58 E-value=4.6 Score=47.61 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 698 KEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 698 sELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
.++...++.|..+...++..+.+.+.++..|..+++.|.
T Consensus 412 ~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~ 450 (895)
T PRK01156 412 NEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLN 450 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444445555555666666666666666666666666444
No 46
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=92.30 E-value=2.6 Score=41.41 Aligned_cols=116 Identities=17% Similarity=0.297 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----c--
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK-----N-- 737 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR-----N-- 737 (820)
++-+|..+=..|+++.|++....+++...++-...|...|++|..+.-.+...+..|..-++-||..-...- .
T Consensus 4 LeP~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqeke~eaqrq~~ 83 (134)
T PF15233_consen 4 LEPQIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQLHCQEKESEAQRQQT 83 (134)
T ss_pred ccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 455788888899999999999999999999999999999999999999999999977776666655221111 0
Q ss_pred ----CCChHhHHHHHHhhhhhhh-cCCC-ChHHHHHHHHHHHHHHHHHHHHh
Q 003431 738 ----AISVDDIDGSIRNMEHRIA-HETL-PLKEEKQIIREIKQLKQRREQIS 783 (820)
Q Consensus 738 ----ASSeEEIDarIKsLEyRIQ-HESL-SLkEEKKLLKEIKQLKkTREKVi 783 (820)
|..-=+++. .||..|. |..| -+--..++-+||..|+.+++++.
T Consensus 84 ~~~eck~R~~fe~---qLE~lm~qHKdLwefh~~erLa~EI~~l~~sKEQLL 132 (134)
T PF15233_consen 84 LLQECKLRLDFEE---QLEDLMGQHKDLWEFHMPERLAREICALESSKEQLL 132 (134)
T ss_pred hhHhHHHHHHHHH---HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHh
Confidence 110001111 3333332 4442 22226788999999999999876
No 47
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=92.10 E-value=5.8 Score=49.72 Aligned_cols=39 Identities=31% Similarity=0.298 Sum_probs=31.8
Q ss_pred cchhhhccccCCCCcceeeccccccccccccccccccch
Q 003431 387 TEPEVLQGGIDGVDERSISVDNAAVESCTSESVYEESTA 425 (820)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~s~~~~~~e~~~~~~~~~~~~~ 425 (820)
.-|||||+..+|-++--...|--.+--|.-|-.|.+.|.
T Consensus 243 ISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPF 281 (1317)
T KOG0612|consen 243 ISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPF 281 (1317)
T ss_pred cCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcc
Confidence 479999999998777777888877777887877877774
No 48
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=92.04 E-value=4.2 Score=50.26 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhHHHHh
Q 003431 767 QIIREIKQLKQRREQISSSIGEHDEVQLA 795 (820)
Q Consensus 767 KLLKEIKQLKkTREKViANAAmQAKIQdS 795 (820)
+|-++|+..+..|..|..|..-....|..
T Consensus 782 ~L~~~l~~ie~~r~~V~eY~~~~~~~~~~ 810 (1201)
T PF12128_consen 782 QLEKELKRIEERRAEVIEYEDWLQEEWDK 810 (1201)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 35577888888888888887665555544
No 49
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.88 E-value=12 Score=38.58 Aligned_cols=53 Identities=11% Similarity=0.389 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSAR 715 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR 715 (820)
......|.++...|..+...+..+.-++..++.+...+..++.........+.
T Consensus 50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le 102 (312)
T PF00038_consen 50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLE 102 (312)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556677777777777666666666666666666555555554444444333
No 50
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.86 E-value=6.9 Score=37.89 Aligned_cols=96 Identities=17% Similarity=0.337 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHh
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDD 743 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEE 743 (820)
++..+.++|...+..+++.-.++-.+|.++..+...+-.++..+..++..++..+.+.-+ ..+..+.
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~-------------~~~~~E~ 77 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK-------------RKSNAEQ 77 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------------HHHhHHH
Confidence 344444444444444444444444444444444444444444444333333333322211 1134557
Q ss_pred HHHHHHhhhhhhhcCCCChHHHHHHHHHH
Q 003431 744 IDGSIRNMEHRIAHETLPLKEEKQIIREI 772 (820)
Q Consensus 744 IDarIKsLEyRIQHESLSLkEEKKLLKEI 772 (820)
|.++|..||..+...-=.|.+=-.-|+++
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e~ 106 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLREA 106 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888877776655555444444443
No 51
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.84 E-value=13 Score=37.96 Aligned_cols=62 Identities=16% Similarity=0.353 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------CCChHhHHHHHHhhhhhhhc
Q 003431 696 SYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKN------AISVDDIDGSIRNMEHRIAH 757 (820)
Q Consensus 696 ERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRN------ASSeEEIDarIKsLEyRIQH 757 (820)
+.+.|+.+|+....+.+.+...+..+-.+|..++..+..|.. ...-++|-.++..++.+++.
T Consensus 69 Evr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~ 136 (194)
T PF15619_consen 69 EVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQE 136 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444555555566666666666662 22345555555555555543
No 52
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.79 E-value=9.2 Score=41.40 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHh
Q 003431 768 IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSS 812 (820)
Q Consensus 768 LLKEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKE 812 (820)
+..+|.++++.+++-..+.... -..++++++.|.+.
T Consensus 251 ~~~~I~~ae~~~~~~r~~t~~E---------i~~Lk~~~~~Le~l 286 (312)
T smart00787 251 LNTEIAEAEKKLEQCRGFTFKE---------IEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHhcCCCCHHH---------HHHHHHHHHHHHHH
Confidence 4456666666666655444321 22455555555544
No 53
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.69 E-value=3.9 Score=50.34 Aligned_cols=16 Identities=38% Similarity=0.505 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 003431 763 KEEKQIIREIKQLKQR 778 (820)
Q Consensus 763 kEEKKLLKEIKQLKkT 778 (820)
..+|||=.||.+|++.
T Consensus 390 eRDkwir~ei~~l~~~ 405 (1200)
T KOG0964|consen 390 ERDKWIRSEIEKLKRG 405 (1200)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3457787888887765
No 54
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.68 E-value=7.1 Score=45.70 Aligned_cols=69 Identities=14% Similarity=0.187 Sum_probs=39.3
Q ss_pred HHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHhhc
Q 003431 744 IDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSSMF 814 (820)
Q Consensus 744 IDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKEL~ 814 (820)
|...+..|.++|.---++-.+=+++-+|-.+|++.-.++-. ..-+-.|....++..|+++.|.+.+.++
T Consensus 313 lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~--~~d~l~k~vw~~~l~~~~~f~~le~~~~ 381 (581)
T KOG0995|consen 313 LQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQS--ELDRLSKEVWELKLEIEDFFKELEKKFI 381 (581)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33445555666666666666666666666666665443321 1112234444556678888888777654
No 55
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.62 E-value=2.1 Score=40.88 Aligned_cols=72 Identities=19% Similarity=0.346 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIR----------ASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINM 734 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKR----------AERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~K 734 (820)
+.-++..++.++..+.+.|..+.++|-++- .+...|..+++.|..++..+...+++|-.+.+.|+..+..
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~D 107 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQD 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 344566677777777777777766665544 4444556667777777777777888888888888887777
Q ss_pred hh
Q 003431 735 MK 736 (820)
Q Consensus 735 LR 736 (820)
||
T Consensus 108 lK 109 (120)
T PF12325_consen 108 LK 109 (120)
T ss_pred HH
Confidence 66
No 56
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=91.59 E-value=2.3 Score=41.00 Aligned_cols=53 Identities=17% Similarity=0.358 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHHHHHhhhh
Q 003431 701 AEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEH 753 (820)
Q Consensus 701 IeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEIDarIKsLEy 753 (820)
.+++..+..+...++..+.+-..+++.|+..|..|++..+.++|...|..|+-
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~ 123 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEE 123 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 44567777777777788888888888888888888877788888888877663
No 57
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=91.51 E-value=7.3 Score=45.40 Aligned_cols=72 Identities=15% Similarity=0.322 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
|+..++.|.+.+.+..+.|....+++......+.++.+++.-++...+.+...+..-++|...|...|..+|
T Consensus 118 l~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 118 LREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 344444444444444444444444444334444444444444444444444444444555555555555555
No 58
>PRK09039 hypothetical protein; Validated
Probab=91.37 E-value=3.4 Score=44.73 Aligned_cols=31 Identities=6% Similarity=0.174 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 706 AAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 706 ALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
.+..++...+..+.+.+.++..|++.|..||
T Consensus 120 ~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr 150 (343)
T PRK09039 120 ELAQELDSEKQVSARALAQVELLNQQIAALR 150 (343)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444
No 59
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.30 E-value=18 Score=36.71 Aligned_cols=131 Identities=18% Similarity=0.282 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHHH
Q 003431 668 QIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGS 747 (820)
Q Consensus 668 KIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEIDar 747 (820)
.|..+..+|..+++.-......+.....+-..|.+-|..++.+...++..+..-.+....|+.. + .....++..
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~----k--~rl~~~ek~ 101 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNL----K--ARLKELEKE 101 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H--HHHHHHHHH
Confidence 3444444444444333333333333344444444444444444433333333322222222222 2 234456777
Q ss_pred HHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHh-hcccchhHHHHhhhhhH-HHHHHHHHHHHhhc
Q 003431 748 IRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQIS-SSIGEHDEVQLAFDQKD-QIEEKMKVVLSSMF 814 (820)
Q Consensus 748 IKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKVi-ANAAmQAKIQdSLDQKE-AIQdQVKlLkKEL~ 814 (820)
|+.|+|.-+ -+.+...+|++-|+.+. .|..+--.+|+-.+-|- -++.+++.|...|+
T Consensus 102 l~~Lk~e~e----------vL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE 160 (201)
T PF13851_consen 102 LKDLKWEHE----------VLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLE 160 (201)
T ss_pred HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777543 23455666666666655 33333333443333333 44455555544443
No 60
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=91.28 E-value=5.5 Score=51.99 Aligned_cols=121 Identities=17% Similarity=0.277 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK------- 736 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR------- 736 (820)
++...|..+.-.+...|..+......++.......+|..+++..+.....++..+..-.+.++.|+..+..||
T Consensus 1608 kle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~ 1687 (1930)
T KOG0161|consen 1608 KLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALE 1687 (1930)
T ss_pred hhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777776666666666666666666666666666666666555554444455555444444
Q ss_pred c--CCChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhh
Q 003431 737 N--AISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISS 784 (820)
Q Consensus 737 N--ASSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViA 784 (820)
. -..+-+++.....+.......|....+.++|=.+|.+|+..-+.+..
T Consensus 1688 Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~ 1737 (1930)
T KOG0161|consen 1688 RARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQS 1737 (1930)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 13566666666666666777777888888888888888777655543
No 61
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=91.26 E-value=7 Score=45.27 Aligned_cols=42 Identities=19% Similarity=0.337 Sum_probs=32.1
Q ss_pred CChHhHHHHHHhhhhhhhcCCCChHHHHHHHH-HHHHHHHHHH
Q 003431 739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIR-EIKQLKQRRE 780 (820)
Q Consensus 739 SSeEEIDarIKsLEyRIQHESLSLkEEKKLLK-EIKQLKkTRE 780 (820)
.++.|++..|..+-+-.+..||+|.|--+-++ -|..|....+
T Consensus 462 ~~i~eln~~i~~~~~~e~nksi~Lee~i~~~~~~i~El~~~l~ 504 (622)
T COG5185 462 KSILELNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILE 504 (622)
T ss_pred HHHHHHhHHHHHHHHHHhccceeHHHHhhhHHhHHHHHHHHHH
Confidence 48899999999999999999999998765443 3455554433
No 62
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.24 E-value=7.6 Score=46.44 Aligned_cols=14 Identities=14% Similarity=0.508 Sum_probs=6.0
Q ss_pred hHHHHHHhhhhhhh
Q 003431 743 DIDGSIRNMEHRIA 756 (820)
Q Consensus 743 EIDarIKsLEyRIQ 756 (820)
++..++..++-++.
T Consensus 658 ~~~~~~~~~~~~~~ 671 (908)
T COG0419 658 ELEEKVEELEAEIR 671 (908)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 63
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.17 E-value=13 Score=43.91 Aligned_cols=73 Identities=12% Similarity=0.211 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDD-IQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieE-IKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
|......+.++.+|..++..-.+...+ +++...-+ ++.++...|..+...+...++..|.||+.+++++++.+
T Consensus 4 ~~aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL-~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~ 77 (772)
T KOG0999|consen 4 PMAEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGL-ELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYR 77 (772)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777776665554333 33333222 45666778888888899999999999999999999988
No 64
>PRK04863 mukB cell division protein MukB; Provisional
Probab=91.02 E-value=3.7 Score=52.29 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=26.4
Q ss_pred CChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHH
Q 003431 739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREI 772 (820)
Q Consensus 739 SSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEI 772 (820)
.|.++|...+..++-+++.-.-.|.+-++-+..+
T Consensus 435 ~SdEeLe~~LenF~aklee~e~qL~elE~kL~~l 468 (1486)
T PRK04863 435 LTADNAEDWLEEFQAKEQEATEELLSLEQKLSVA 468 (1486)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999987777666666555443
No 65
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.85 E-value=24 Score=37.13 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=7.1
Q ss_pred ChHHHHHHHHHHHHHH
Q 003431 662 DENLREQIKAAQSKVD 677 (820)
Q Consensus 662 DEkLKAKIDeAQkEIq 677 (820)
...+..++..++.++.
T Consensus 76 ~~~~~~~l~~l~~~~~ 91 (423)
T TIGR01843 76 ATDVEADAAELESQVL 91 (423)
T ss_pred cchhhhHHHHHHHHHH
Confidence 3344444444444444
No 66
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=90.74 E-value=7.4 Score=48.27 Aligned_cols=16 Identities=25% Similarity=0.545 Sum_probs=8.6
Q ss_pred ChHhHHHHHHhhhhhh
Q 003431 740 SVDDIDGSIRNMEHRI 755 (820)
Q Consensus 740 SeEEIDarIKsLEyRI 755 (820)
..+.+.+.|..++.+.
T Consensus 373 ~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 373 EVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555554
No 67
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.47 E-value=11 Score=45.05 Aligned_cols=55 Identities=16% Similarity=0.354 Sum_probs=31.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 003431 676 VDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARE---SLKSKRQEIDSVQS 730 (820)
Q Consensus 676 IqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~---eldEKRKELdpLQE 730 (820)
|.+...+|.+|...++.++..+.....+|..++++++.++. .+.+|.+++..-|+
T Consensus 553 i~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe 610 (717)
T PF10168_consen 553 IEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQE 610 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777776666666666666666666666555543 22344444444444
No 68
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.37 E-value=17 Score=39.98 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=12.5
Q ss_pred CChHhHHHHHHhhhhhhhcC
Q 003431 739 ISVDDIDGSIRNMEHRIAHE 758 (820)
Q Consensus 739 SSeEEIDarIKsLEyRIQHE 758 (820)
..+-+++++|..|+.++...
T Consensus 275 P~v~~l~~qi~~l~~~l~~~ 294 (498)
T TIGR03007 275 PDVIATKREIAQLEEQKEEE 294 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhh
Confidence 45556667777777766443
No 69
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.23 E-value=23 Score=38.23 Aligned_cols=62 Identities=18% Similarity=0.388 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 669 IKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQS 730 (820)
Q Consensus 669 IDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQE 730 (820)
|...+.+|..+.+....|-.+|..+-....++..+++.++.+..+....+.+-.++|+.|.+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455444444444444444444444444444444444444444333333333333333
No 70
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.22 E-value=2.3 Score=45.60 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 003431 764 EEKQIIREIKQLKQR 778 (820)
Q Consensus 764 EEKKLLKEIKQLKkT 778 (820)
+|.+..++...++..
T Consensus 93 eE~~~~~~~n~~~~~ 107 (314)
T PF04111_consen 93 EEEEYWREYNELQLE 107 (314)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555544
No 71
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=90.18 E-value=13 Score=38.13 Aligned_cols=77 Identities=19% Similarity=0.323 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHH----HHHhhhhhhhcCCCC
Q 003431 686 IRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDG----SIRNMEHRIAHETLP 761 (820)
Q Consensus 686 IieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEIDa----rIKsLEyRIQHESLS 761 (820)
+..+.+.+..+.+.+..+++.|..+.+++...+....+++..|+..+..+.. ...+|.- .|..|+-.++ ..+|
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~--~~~~l~p~m~~m~~~L~~~v~-~d~P 123 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE--TRQELVPLMEQMIDELEQFVE-LDLP 123 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHh-cCCC
Confidence 3444444445555555555555556666666666667777777776666552 3334443 3344433332 3455
Q ss_pred hHHH
Q 003431 762 LKEE 765 (820)
Q Consensus 762 LkEE 765 (820)
+.-+
T Consensus 124 f~~~ 127 (251)
T PF11932_consen 124 FLLE 127 (251)
T ss_pred CChH
Confidence 5554
No 72
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=90.17 E-value=3.3 Score=45.24 Aligned_cols=75 Identities=28% Similarity=0.388 Sum_probs=51.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------cC--CChHhHHHHHHhhhhhhhcC
Q 003431 695 ASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK--------------NA--ISVDDIDGSIRNMEHRIAHE 758 (820)
Q Consensus 695 AERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR--------------NA--SSeEEIDarIKsLEyRIQHE 758 (820)
.+|..|+.+|..++.+.+++...+..-.+|...|....+-+| +. ..+-+||+.| +|.|..|+
T Consensus 126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi--~ENRyL~e 203 (319)
T PF09789_consen 126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALI--MENRYLKE 203 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHH--HHHHHHHH
Confidence 456678889999998888888766666666555555444444 11 3555888776 56666666
Q ss_pred CC-ChHHHHHHHHH
Q 003431 759 TL-PLKEEKQIIRE 771 (820)
Q Consensus 759 SL-SLkEEKKLLKE 771 (820)
-| .+.||+.+++.
T Consensus 204 rl~q~qeE~~l~k~ 217 (319)
T PF09789_consen 204 RLKQLQEEKELLKQ 217 (319)
T ss_pred HHHHHHHHHHHHHH
Confidence 65 68888888765
No 73
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=90.14 E-value=11 Score=42.86 Aligned_cols=129 Identities=13% Similarity=0.247 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI---------- 732 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL---------- 732 (820)
..+...|....+.|..-.+.+.++...|+..+.+...+..+|......+..++..+..-...+..|+...
T Consensus 41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~ 120 (420)
T COG4942 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQ 120 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688899999999988888888888888888888888877777776666666665555444444443322
Q ss_pred ----HHhh-c-----CCChHhHH--HHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhc----ccchhHHHHhh
Q 003431 733 ----NMMK-N-----AISVDDID--GSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSS----IGEHDEVQLAF 796 (820)
Q Consensus 733 ----~KLR-N-----ASSeEEID--arIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViAN----AAmQAKIQdSL 796 (820)
.++. | ..+.++.. .++..+...|.+. +++.|+.|++++..+.+. ++.|+++...+
T Consensus 121 L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~---------~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~ 191 (420)
T COG4942 121 LAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPA---------RAERIDALKATLKQLAAVRAEIAAEQAELTTLL 191 (420)
T ss_pred HHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 1 14777766 5666666666653 456666666666555433 34455555444
Q ss_pred hhhH
Q 003431 797 DQKD 800 (820)
Q Consensus 797 DQKE 800 (820)
.+..
T Consensus 192 ~eq~ 195 (420)
T COG4942 192 SEQR 195 (420)
T ss_pred HHHH
Confidence 4333
No 74
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.08 E-value=16 Score=43.63 Aligned_cols=17 Identities=18% Similarity=0.216 Sum_probs=9.6
Q ss_pred CCcccccccccccCCCC
Q 003431 465 PEDVNVENVGIQHAGGE 481 (820)
Q Consensus 465 ~~~~~~~~~~~~~~~~~ 481 (820)
+.-.+-+.+-..|++|-
T Consensus 373 ~Dp~~~~ryy~~H~~Gv 389 (717)
T PF10168_consen 373 RDPLNPDRYYCYHNAGV 389 (717)
T ss_pred ecCCCCceEEEEecCcc
Confidence 34445555666676664
No 75
>PRK01156 chromosome segregation protein; Provisional
Probab=89.97 E-value=11 Score=44.55 Aligned_cols=27 Identities=0% Similarity=0.036 Sum_probs=10.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 695 ASYKEYAEKLEAAISDERSARESLKSK 721 (820)
Q Consensus 695 AERsELIeQLKALRaE~RqlR~eldEK 721 (820)
.++.++..++..+..+...++..+...
T Consensus 197 ~eL~~~~~~i~el~~~~~~l~~~i~~~ 223 (895)
T PRK01156 197 LELENIKKQIADDEKSHSITLKEIERL 223 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333433333333333333333
No 76
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=89.96 E-value=2.6 Score=42.34 Aligned_cols=65 Identities=14% Similarity=0.311 Sum_probs=48.9
Q ss_pred EeccCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 655 VKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIR------ASYKEYAEKLEAAISDERSARESLK 719 (820)
Q Consensus 655 VRVPRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKR------AERsELIeQLKALRaE~RqlR~eld 719 (820)
=.+|.-..-.++.++..++++|..++..+..+..++...+ .+|..+.++++.|+.+.++++..+.
T Consensus 57 WsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 57 WSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred EecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666778888999999999999999998888888877 4555666666666666666665555
No 77
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.95 E-value=28 Score=36.58 Aligned_cols=11 Identities=9% Similarity=0.350 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 003431 801 QIEEKMKVVLS 811 (820)
Q Consensus 801 AIQdQVKlLkK 811 (820)
..+.++..++.
T Consensus 257 ~~~~~l~~~~~ 267 (423)
T TIGR01843 257 ELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHH
Confidence 33334444333
No 78
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=89.95 E-value=1.8 Score=38.73 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 686 IRDDIQTIRASYKEYAEKLEAAISDERSARESLKS 720 (820)
Q Consensus 686 IieEIKAKRAERsELIeQLKALRaE~RqlR~eldE 720 (820)
...++-.+-.+++.++.+++.|++++..+-..+..
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~ 61 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIGK 61 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34444444444444444444444444444444333
No 79
>PLN02939 transferase, transferring glycosyl groups
Probab=89.81 E-value=18 Score=44.86 Aligned_cols=54 Identities=15% Similarity=0.147 Sum_probs=45.9
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003431 660 YDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERS 713 (820)
Q Consensus 660 YDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~Rq 713 (820)
+--+.+---|..+++.|--+||+|....+.++++..++..|+.++..|.-.+..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (977)
T PLN02939 128 FQLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSE 181 (977)
T ss_pred ccHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 345677888999999999999999999999999999999998888877665554
No 80
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=89.67 E-value=8.3 Score=44.10 Aligned_cols=43 Identities=7% Similarity=0.373 Sum_probs=26.5
Q ss_pred hHhHHHHHHhhhhhhhcCCCChHHHHHHHH----HHHHHHHHHHHHh
Q 003431 741 VDDIDGSIRNMEHRIAHETLPLKEEKQIIR----EIKQLKQRREQIS 783 (820)
Q Consensus 741 eEEIDarIKsLEyRIQHESLSLkEEKKLLK----EIKQLKkTREKVi 783 (820)
-..+..+|..|..+|..+.+.+..-.+.+. .+..|...+..+.
T Consensus 450 ~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~ 496 (569)
T PRK04778 450 FFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELV 496 (569)
T ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677788888888888888776663332 2334444444444
No 81
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=89.45 E-value=6.7 Score=37.46 Aligned_cols=84 Identities=6% Similarity=0.188 Sum_probs=55.2
Q ss_pred ChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 003431 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISV 741 (820)
Q Consensus 662 DEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSe 741 (820)
...|..++..++..|+..+-.|..++.....+++-...|..+-.+.......++..+.+-++.++.-+.+--.|....+.
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k 90 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLK 90 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888887777777777777777777766666666666666666666544333334433456
Q ss_pred HhHH
Q 003431 742 DDID 745 (820)
Q Consensus 742 EEID 745 (820)
.++|
T Consensus 91 ~~~d 94 (107)
T PF09304_consen 91 AQKD 94 (107)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 6666
No 82
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=89.44 E-value=25 Score=35.25 Aligned_cols=134 Identities=16% Similarity=0.246 Sum_probs=86.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cC--CChHhHHHHH
Q 003431 672 AQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK-NA--ISVDDIDGSI 748 (820)
Q Consensus 672 AQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR-NA--SSeEEIDarI 748 (820)
+++-|..+...+.+|..--...|.++..+..+|..++.+....-...+.--..-+..+..|..+. ++ -|+++|-.--
T Consensus 4 i~~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AY 83 (159)
T PF05384_consen 4 IKKTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAY 83 (159)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHH
Confidence 34556667777788887777788888777777777776555555444443333333333333332 22 3899998887
Q ss_pred HhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHhhcc
Q 003431 749 RNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSSMFS 815 (820)
Q Consensus 749 KsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKEL~s 815 (820)
...+.-+..-.|--.+|++|.+.=..|+.....+. +++..=|.+-.||...-..|-+
T Consensus 84 e~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~----------~tierAE~l~sqi~vvl~yL~~ 140 (159)
T PF05384_consen 84 EEAHELQVRLAMLREREKQLRERRDELERRLRNLE----------ETIERAENLVSQIGVVLNYLSG 140 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777777777888888888888877755544 5555555666666655554443
No 83
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.39 E-value=14 Score=43.50 Aligned_cols=134 Identities=19% Similarity=0.209 Sum_probs=95.4
Q ss_pred ChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhh-
Q 003431 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKS----KRQEIDSVQSRINMMK- 736 (820)
Q Consensus 662 DEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldE----KRKELdpLQEaL~KLR- 736 (820)
-+.+...|..++.+...+...+......+.+++.....|..++..+-......|..-.+ -+.|++.|-..|..+.
T Consensus 427 ~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l 506 (581)
T KOG0995|consen 427 LDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKL 506 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888888888888888888888888888888777776654333 4668888888887776
Q ss_pred -cCCChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhH
Q 003431 737 -NAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKD 800 (820)
Q Consensus 737 -NASSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKE 800 (820)
--.+.-+.+.+++..|-+.+--.-+..||++-+- +||.+--.+++.+.. -+|.+|..+.
T Consensus 507 ~~~~~m~~a~~~v~s~e~el~~~~~~~~eer~ki~--~ql~~~i~~i~~~k~---~iqs~le~~k 566 (581)
T KOG0995|consen 507 VLNTSMKEAEELVKSIELELDRMVATGEEERQKIA--KQLFAVIDQISDFKV---SIQSSLENLK 566 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 1257778888899999998888889999987661 334444333444332 2444444333
No 84
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=89.21 E-value=23 Score=41.64 Aligned_cols=37 Identities=24% Similarity=0.448 Sum_probs=18.3
Q ss_pred HHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHh
Q 003431 744 IDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQIS 783 (820)
Q Consensus 744 IDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKVi 783 (820)
|..+++.|.-...+.. .|=++.+++|+.|+..-+.+.
T Consensus 424 L~~e~r~lk~~~~~~~---~e~~~~~~~ik~~r~~~k~~~ 460 (594)
T PF05667_consen 424 LIEEYRRLKEKASNRE---SESKQKLQEIKELREEIKEIE 460 (594)
T ss_pred HHHHHHHHHHHHhhcc---hHHHHHHHHHHHHHHHHHHHH
Confidence 4444455444333221 333456666666666655555
No 85
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.20 E-value=5.8 Score=42.62 Aligned_cols=72 Identities=11% Similarity=0.220 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINM 734 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~K 734 (820)
......+.+++.+++++.+....+..+++++..++.++..++..|..+...+...-.+-.++...++..+..
T Consensus 39 ~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~ 110 (314)
T PF04111_consen 39 SDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIE 110 (314)
T ss_dssp ---HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888888888888888888888888888888888888877777765555555555555544433
No 86
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=89.18 E-value=3 Score=44.47 Aligned_cols=70 Identities=14% Similarity=0.246 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHHHHHhhhh
Q 003431 682 SRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEH 753 (820)
Q Consensus 682 aR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEIDarIKsLEy 753 (820)
.+..+.++++....+..+|+.++..|.++....+..+++-..|.-.|.+.++++- .-+..|..+...|+.
T Consensus 136 ~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~--~ev~~L~~r~~ELe~ 205 (290)
T COG4026 136 DYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP--GEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch--hHHHHHHHHHHHhcc
Confidence 3333333333333333444444444444333333333333333333333333322 133344444444443
No 87
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=89.09 E-value=5.4 Score=34.90 Aligned_cols=66 Identities=17% Similarity=0.301 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQ 729 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQ 729 (820)
++++.|..|+..+..+...=...-..++.++.+|+....+|..+..+...++..++..++|++.++
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 477888888888887777777778888889999999999999999888888888888888876654
No 88
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.56 E-value=5 Score=41.17 Aligned_cols=35 Identities=6% Similarity=0.224 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 702 EKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 702 eQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
.++..|++++++++..+...+++.+.|+..+..++
T Consensus 132 ~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 132 SVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444666666666666666666666655554444
No 89
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=88.48 E-value=13 Score=42.66 Aligned_cols=42 Identities=17% Similarity=0.347 Sum_probs=27.3
Q ss_pred ChHhHHHHHHhhhhhhhcCCCChHHHH------HHHHHHHHHHHHHHH
Q 003431 740 SVDDIDGSIRNMEHRIAHETLPLKEEK------QIIREIKQLKQRREQ 781 (820)
Q Consensus 740 SeEEIDarIKsLEyRIQHESLSLkEEK------KLLKEIKQLKkTREK 781 (820)
....+...+..+..+|+-..||--.+. .+=++|.+|.+.+.+
T Consensus 419 kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~ 466 (569)
T PRK04778 419 KLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEE 466 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 466677777777777777777654443 223667777776666
No 90
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=88.46 E-value=3.7 Score=44.68 Aligned_cols=73 Identities=19% Similarity=0.272 Sum_probs=42.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHHH
Q 003431 675 KVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISD-------ERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGS 747 (820)
Q Consensus 675 EIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE-------~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEIDar 747 (820)
-|+.|+.+-..-...++....+..+|+.||-..++. +=.++-++++.|+||++|++++.-||+ |..+=|+-
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrs--sL~ekDkG 146 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRS--SLAEKDKG 146 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhchhhhh
Confidence 444444333334444444455555555555444322 113334788999999999999999994 33333444
Q ss_pred HH
Q 003431 748 IR 749 (820)
Q Consensus 748 IK 749 (820)
|+
T Consensus 147 iQ 148 (305)
T PF15290_consen 147 IQ 148 (305)
T ss_pred HH
Confidence 43
No 91
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=88.28 E-value=12 Score=42.83 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=29.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 694 RASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 694 RAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
-..-..+++|+..++++.+.+++.+..+-.+|..||+....++
T Consensus 26 ~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~ 68 (459)
T KOG0288|consen 26 EKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLN 68 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456667777777777777777777777777777665555
No 92
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.94 E-value=9.1 Score=42.69 Aligned_cols=111 Identities=15% Similarity=0.213 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKN------ 737 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRN------ 737 (820)
..++++..++.++..+++.-..|..-.+++++.+..|-.|+-.|.....-|.. |.+| +|+++.|
T Consensus 222 r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~----k~~e------al~~~~n~~~~~~ 291 (365)
T KOG2391|consen 222 RREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKS----KVRE------ALEKAENLEALDI 291 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHHH------HHhhhccCcCCCc
Confidence 34555556666666665555555555555555555544444444433333332 2222 3333331
Q ss_pred -----------------CCChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccch
Q 003431 738 -----------------AISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEH 789 (820)
Q Consensus 738 -----------------ASSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViANAAmQ 789 (820)
.--...|+.-|+.|..-.+-+.|+|.. .||....| +|+|.+--+.||
T Consensus 292 D~~~~~~~~l~kq~l~~~A~d~aieD~i~~L~~~~r~G~i~l~~---yLr~VR~l--sReQF~~rat~q 355 (365)
T KOG2391|consen 292 DEAIECTAPLYKQILECYALDLAIEDAIYSLGKSLRDGVIDLDQ---YLRHVRLL--SREQFILRATMQ 355 (365)
T ss_pred hhhhhccchHHHHHHHhhhhhhHHHHHHHHHHHHHhcCeeeHHH---HHHHHHHH--HHHHHHHHHHHH
Confidence 124456788899999999999999975 56666666 677777555554
No 93
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=87.92 E-value=13 Score=43.37 Aligned_cols=13 Identities=31% Similarity=0.332 Sum_probs=8.0
Q ss_pred ChHHHHHHHHHHH
Q 003431 662 DENLREQIKAAQS 674 (820)
Q Consensus 662 DEkLKAKIDeAQk 674 (820)
||++-++|-.+-.
T Consensus 165 dP~~Aa~iaN~la 177 (754)
T TIGR01005 165 DPKLAAAIPDAIA 177 (754)
T ss_pred CHHHHHHHHHHHH
Confidence 6777777655443
No 94
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=87.84 E-value=14 Score=45.85 Aligned_cols=115 Identities=7% Similarity=0.139 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEA----------AISDERSARESLKSKRQEIDSVQSRIN 733 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKA----------LRaE~RqlR~eldEKRKELdpLQEaL~ 733 (820)
+|..|+..++..|+.+.+....+...-+.+.-++..+....+. ++....++....++...+...|+..+.
T Consensus 412 nLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~ik 491 (1195)
T KOG4643|consen 412 NLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIK 491 (1195)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777666655554444444444444333221 111222222223333333333333333
Q ss_pred Hhhc-----CCChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHH
Q 003431 734 MMKN-----AISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQR 778 (820)
Q Consensus 734 KLRN-----ASSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkT 778 (820)
+++. ..-..-+.+++..|..++++..+.+...++=+.+|.++..+
T Consensus 492 nlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~ 541 (1195)
T KOG4643|consen 492 NLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGN 541 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3331 01222334455566666666666666666655555555444
No 95
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=87.77 E-value=25 Score=42.57 Aligned_cols=90 Identities=13% Similarity=0.165 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHH
Q 003431 698 KEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQ 777 (820)
Q Consensus 698 sELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKk 777 (820)
.+|..++-+|.-+...+-.+++.-|+||+.|++.|...-+---..|-|..|+.|.--=+. | =|+.|.+=...++
T Consensus 405 ~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEk--L----SK~ql~qs~iIkK 478 (961)
T KOG4673|consen 405 EEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEK--L----SKKQLAQSAIIKK 478 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH--h----HHHHHHHHHHHHH
Confidence 344555555554444555555556666666666553322101123345556655321111 1 2677777666666
Q ss_pred HHHHHhhcccchhHHH
Q 003431 778 RREQISSSIGEHDEVQ 793 (820)
Q Consensus 778 TREKViANAAmQAKIQ 793 (820)
.|.+...+..|-+|..
T Consensus 479 LRAk~ke~etl~~K~g 494 (961)
T KOG4673|consen 479 LRAKIKEAETLEEKKG 494 (961)
T ss_pred HHHHhhhhhHHHHHhh
Confidence 6766666665544443
No 96
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=87.74 E-value=31 Score=35.41 Aligned_cols=49 Identities=20% Similarity=0.342 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERS 713 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~Rq 713 (820)
...++..+.+........|..+-.....--.++..|-.+|+.++.....
T Consensus 62 ~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee 110 (237)
T PF00261_consen 62 ATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEE 110 (237)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554444444443333334444444444433333333
No 97
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.49 E-value=6.5 Score=46.39 Aligned_cols=94 Identities=13% Similarity=0.283 Sum_probs=51.5
Q ss_pred ChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----
Q 003431 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK----- 736 (820)
Q Consensus 662 DEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR----- 736 (820)
--..+..|..+...++++......+..++..++.+...|.++|..++.+.+ .-..+..|++.++..+.+|+
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~----~~~~~~rei~~~~~~I~~L~~~L~e 492 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR----DKVRKDREIRARDRRIERLEKELEE 492 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666555555555555555555555555544443333 00112334444444444444
Q ss_pred cCCChHhHHHHHHhhh--hhhhcCC
Q 003431 737 NAISVDDIDGSIRNME--HRIAHET 759 (820)
Q Consensus 737 NASSeEEIDarIKsLE--yRIQHES 759 (820)
...-+++|..++..|. |+|+++-
T Consensus 493 ~~~~ve~L~~~l~~l~k~~~lE~sG 517 (652)
T COG2433 493 KKKRVEELERKLAELRKMRKLELSG 517 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 1257788888888887 7776654
No 98
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=87.39 E-value=14 Score=33.64 Aligned_cols=92 Identities=12% Similarity=0.202 Sum_probs=70.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCChHhHHHHHH
Q 003431 672 AQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK--NAISVDDIDGSIR 749 (820)
Q Consensus 672 AQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR--NASSeEEIDarIK 749 (820)
|+.+|..+.+++......+..+..+...+-.++-.|..+.......+-.-.+.++.|...+++|+ .+.|-+-|.
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~---- 76 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIE---- 76 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHH----
Confidence 46788888999999999999999999999999988898888888888888888888888888888 223333332
Q ss_pred hhhhhhhcCCCChHHHHHHHHHHHHHHH
Q 003431 750 NMEHRIAHETLPLKEEKQIIREIKQLKQ 777 (820)
Q Consensus 750 sLEyRIQHESLSLkEEKKLLKEIKQLKk 777 (820)
.|.. -|+.+++.|+.|++
T Consensus 77 ~L~~----------~E~~~~~~l~~~Ek 94 (96)
T PF08647_consen 77 QLKE----------TEKEFVRKLKNLEK 94 (96)
T ss_pred HHHH----------HHHHHHHHHHHhhc
Confidence 2222 56777777777664
No 99
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.24 E-value=19 Score=42.59 Aligned_cols=142 Identities=14% Similarity=0.256 Sum_probs=81.8
Q ss_pred eeEEeccCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 652 YFLVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIR-------ASYKEYAEKLEAAISDERSARESLKSKRQE 724 (820)
Q Consensus 652 YYfVRVPRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKR-------AERsELIeQLKALRaE~RqlR~eldEKRKE 724 (820)
||+-|+- ++...+.++.+++...+..+.-|...-...+ .+|.-|+..|+.++-+...+-..+.+--.|
T Consensus 104 ~yl~kI~-----eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEE 178 (772)
T KOG0999|consen 104 YYLQKIL-----ELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEE 178 (772)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4655542 4556666666666665555555544443333 455556666666655555555566665566
Q ss_pred HHHHHHHHHHhh-cCCChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHH
Q 003431 725 IDSVQSRINMMK-NAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIE 803 (820)
Q Consensus 725 LdpLQEaL~KLR-NASSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQ 803 (820)
-=.||.....|| +----|-+.+.|++||.-++--.+-| ||--.|++|.. . ++.+++..-..-+
T Consensus 179 NIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~-ee~~~Lk~IAe-------------k--QlEEALeTlq~ER 242 (772)
T KOG0999|consen 179 NISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQL-EEAIRLKEIAE-------------K--QLEEALETLQQER 242 (772)
T ss_pred cchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-------------H--HHHHHHHHHHhHH
Confidence 668888888899 32344677888998887665544433 44455566632 0 1334444333555
Q ss_pred HHHHHHHHhhc
Q 003431 804 EKMKVVLSSMF 814 (820)
Q Consensus 804 dQVKlLkKEL~ 814 (820)
+|-..|+|+|.
T Consensus 243 eqk~alkkEL~ 253 (772)
T KOG0999|consen 243 EQKNALKKELS 253 (772)
T ss_pred HHHHHHHHHHH
Confidence 66666677664
No 100
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=87.22 E-value=32 Score=33.93 Aligned_cols=92 Identities=13% Similarity=0.299 Sum_probs=74.2
Q ss_pred ChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 003431 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISV 741 (820)
Q Consensus 662 DEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSe 741 (820)
.+.|+-+|..+..+++-....+..++...-..|+.+..|..++..+...++.+...+..-+.|.+.|-+.+.+++. -+
T Consensus 19 ~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~--kv 96 (140)
T PF10473_consen 19 KDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQE--KV 96 (140)
T ss_pred HhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 4568888889999988888888888888888999999999999999999999999999999999999888888873 34
Q ss_pred HhHHHHHHhhhhhh
Q 003431 742 DDIDGSIRNMEHRI 755 (820)
Q Consensus 742 EEIDarIKsLEyRI 755 (820)
.+|+.....+...|
T Consensus 97 ~eLE~~~~~~~~~l 110 (140)
T PF10473_consen 97 SELESLNSSLENLL 110 (140)
T ss_pred HHHHHHhHHHHHHH
Confidence 55554444444443
No 101
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=87.03 E-value=8.1 Score=33.48 Aligned_cols=58 Identities=19% Similarity=0.465 Sum_probs=45.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 673 QSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQS 730 (820)
Q Consensus 673 QkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQE 730 (820)
|..++.-.+++..|.+++.+.|+..-.+-.+|+....+++.+...+...+++|+.++.
T Consensus 3 QsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 3 QSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3334444456678888998888888889999999999999999888888888887764
No 102
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=87.01 E-value=22 Score=43.05 Aligned_cols=40 Identities=20% Similarity=0.372 Sum_probs=32.2
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHH
Q 003431 660 YDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKE 699 (820)
Q Consensus 660 YDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsE 699 (820)
++.++.-.+|..|.+.++-+.+.|++++.+++.+|.++..
T Consensus 402 sl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~ 441 (961)
T KOG4673|consen 402 SLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAA 441 (961)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4556667789999999999999999999999887755543
No 103
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=86.94 E-value=41 Score=34.89 Aligned_cols=44 Identities=18% Similarity=0.367 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCChHhHHHH
Q 003431 704 LEAAISDERSARESLKSKRQEIDSVQSRINMMK-----NAISVDDIDGS 747 (820)
Q Consensus 704 LKALRaE~RqlR~eldEKRKELdpLQEaL~KLR-----NASSeEEIDar 747 (820)
+..+..++..++..+...+.+++..+..+.+++ ++.|..+++..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~~~d~~ 140 (327)
T TIGR02971 92 AAKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSASDLDSK 140 (327)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHH
Confidence 333444444444444444444444444444443 45677777744
No 104
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=86.88 E-value=5 Score=36.63 Aligned_cols=60 Identities=13% Similarity=0.260 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 663 ENLREQIKAAQS-------KVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKR 722 (820)
Q Consensus 663 EkLKAKIDeAQk-------EIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKR 722 (820)
++|.+||..|-. +|..++..-..+..+.+..++.|.+|..+-..|+.+...+...+..-+
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL 73 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777766544 666666666666777777777777776666666666666665554433
No 105
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=86.82 E-value=59 Score=37.83 Aligned_cols=48 Identities=17% Similarity=0.333 Sum_probs=29.6
Q ss_pred ChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 003431 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAIS 709 (820)
Q Consensus 662 DEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRa 709 (820)
...+.++++.+++++..+......+..++...+.++..+..++..++.
T Consensus 204 ~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 204 PSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777766666666666666665555555555554444
No 106
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=86.69 E-value=17 Score=44.06 Aligned_cols=139 Identities=13% Similarity=0.279 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHH---------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIR---------------------DDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQ 723 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIi---------------------eEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRK 723 (820)
+|.+|+.+..++...+....++. ..+.++..+..-|.+.+.+|+.++......++.|.+
T Consensus 285 mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~ 364 (775)
T PF10174_consen 285 MKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQA 364 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777776663333333 333444445555555555666666555556666655
Q ss_pred HHHHHHHHHHH-------hhcC-----CChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhH
Q 003431 724 EIDSVQSRINM-------MKNA-----ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDE 791 (820)
Q Consensus 724 ELdpLQEaL~K-------LRNA-----SSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViANAAmQAK 791 (820)
.+..++..+.. |+.- .-+.-|.++|..|+..+- ..++++-.+-..|.. =..+..-...+.+
T Consensus 365 ~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~------ekd~ql~~~k~Rl~~-~~d~~~~~~~~~~ 437 (775)
T PF10174_consen 365 QIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLR------EKDRQLDEEKERLSS-QADSSNEDEALET 437 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhc-cccccchHHHHHH
Confidence 55555554333 3310 112223333333433332 233333333333332 1222223344455
Q ss_pred HHHhhhhhHHHHHHHHHHH
Q 003431 792 VQLAFDQKDQIEEKMKVVL 810 (820)
Q Consensus 792 IQdSLDQKEAIQdQVKlLk 810 (820)
+..++..|+-++.+++..+
T Consensus 438 lEea~~eker~~e~l~e~r 456 (775)
T PF10174_consen 438 LEEALREKERLQERLEEQR 456 (775)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666655543
No 107
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=86.46 E-value=39 Score=35.24 Aligned_cols=105 Identities=12% Similarity=0.248 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cC--
Q 003431 665 LREQIKAAQSKVDEKTRSR---DAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK-NA-- 738 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR---~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR-NA-- 738 (820)
|.++|..|.+++..+++.- ..+.+++..+|.-...+-++-+.|.++.+++......--.+|..||+.-+++. ..
T Consensus 41 L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~ 120 (193)
T PF14662_consen 41 LAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDG 120 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence 4455555555555544332 22456666666666666666666666666666666666667777777665555 10
Q ss_pred --CChHhHHHHHHhhhhhh-hcCCCChHHHHHHH
Q 003431 739 --ISVDDIDGSIRNMEHRI-AHETLPLKEEKQII 769 (820)
Q Consensus 739 --SSeEEIDarIKsLEyRI-QHESLSLkEEKKLL 769 (820)
.-..+|-.....|.+++ +.+++...-+.-+-
T Consensus 121 lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~ 154 (193)
T PF14662_consen 121 LKKRSKELATEKATLQRQLCEFESLICQRDAILS 154 (193)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23455555666666666 55555555554444
No 108
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.40 E-value=6.8 Score=44.91 Aligned_cols=51 Identities=10% Similarity=0.199 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CChHhHHHHHHhhhhhhhcCC
Q 003431 709 SDERSARESLKSKRQEIDSVQSRINMMKNA-----ISVDDIDGSIRNMEHRIAHET 759 (820)
Q Consensus 709 aE~RqlR~eldEKRKELdpLQEaL~KLRNA-----SSeEEIDarIKsLEyRIQHES 759 (820)
+|++..|..+..++.|.++|+..+..++.+ .....++.+++.++.++++..
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666667777777777766665555521 234456666666666666654
No 109
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=86.35 E-value=7.2 Score=39.86 Aligned_cols=49 Identities=6% Similarity=0.143 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003431 667 EQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSAR 715 (820)
Q Consensus 667 AKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR 715 (820)
+||..++.+|.........+..+++....++...-.++.+|..+++.+-
T Consensus 1 kK~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE 49 (237)
T PF00261_consen 1 KKIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLE 49 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666566666666666555555555555555555544
No 110
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=86.11 E-value=12 Score=44.85 Aligned_cols=31 Identities=19% Similarity=0.459 Sum_probs=14.4
Q ss_pred hHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHH
Q 003431 743 DIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQ 777 (820)
Q Consensus 743 EIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKk 777 (820)
+++..|+.|.. .+..-.+-+++.+++++++.
T Consensus 580 ~~~~~i~~lk~----~~~~~~~~~~~~~~~~~~~~ 610 (771)
T TIGR01069 580 EVESIIRELKE----KKIHKAKEIKSIEDLVKLKE 610 (771)
T ss_pred HHHHHHHHHHh----ccccHHHHHHHHHHHHHHHH
Confidence 44444555443 33444444455555555443
No 111
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=85.51 E-value=26 Score=35.95 Aligned_cols=102 Identities=13% Similarity=0.197 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH-HHHHHhhcC-
Q 003431 671 AAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSK----------RQEIDSVQ-SRINMMKNA- 738 (820)
Q Consensus 671 eAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEK----------RKELdpLQ-EaL~KLRNA- 738 (820)
..++.|+++...+..+..+++.++.+...+..+.+.+..+....+..+.+. +.++.|+- .++..|..+
T Consensus 39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v 118 (251)
T PF11932_consen 39 QSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFV 118 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666655555544444443333333333333332 23333321 233334321
Q ss_pred -----CChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHH
Q 003431 739 -----ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREI 772 (820)
Q Consensus 739 -----SSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEI 772 (820)
...+|=-.||..|.-.|.-..+++.|-=+-|=|+
T Consensus 119 ~~d~Pf~~~eR~~Rl~~L~~~l~~~dv~~~ek~r~vlea 157 (251)
T PF11932_consen 119 ELDLPFLLEERQERLARLRAMLDDADVSLAEKFRRVLEA 157 (251)
T ss_pred hcCCCCChHHHHHHHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 3555566788888888888889888765555443
No 112
>PF13166 AAA_13: AAA domain
Probab=85.49 E-value=24 Score=40.39 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 697 YKEYAEKLEAAISDERSARESLKSKR 722 (820)
Q Consensus 697 RsELIeQLKALRaE~RqlR~eldEKR 722 (820)
..++...+..+...+..++..+..|+
T Consensus 324 ~~~~~~~~~~l~~~l~~l~~~L~~K~ 349 (712)
T PF13166_consen 324 KEELKSAIEALKEELEELKKALEKKI 349 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555554
No 113
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.40 E-value=30 Score=43.84 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=11.3
Q ss_pred hHhHHHHHHhhhhhhhcCCCChHHH
Q 003431 741 VDDIDGSIRNMEHRIAHETLPLKEE 765 (820)
Q Consensus 741 eEEIDarIKsLEyRIQHESLSLkEE 765 (820)
......+|..|+-..++.-..|.+.
T Consensus 442 i~~~~~ei~~L~~~~~~~~~~l~e~ 466 (1293)
T KOG0996|consen 442 IQKCQTEIEQLEELLEKEERELDEI 466 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555554444444444433
No 114
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=85.39 E-value=47 Score=34.02 Aligned_cols=19 Identities=21% Similarity=0.653 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 003431 766 KQIIREIKQLKQRREQISS 784 (820)
Q Consensus 766 KKLLKEIKQLKkTREKViA 784 (820)
+.+|.+++.|+..|..++.
T Consensus 147 ~~ll~~l~~l~~eR~~~~~ 165 (296)
T PF13949_consen 147 RELLNKLEELKKEREELLE 165 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5788999999999988774
No 115
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=85.37 E-value=50 Score=39.85 Aligned_cols=43 Identities=9% Similarity=0.237 Sum_probs=23.8
Q ss_pred ChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHh
Q 003431 740 SVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQIS 783 (820)
Q Consensus 740 SeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKVi 783 (820)
...+|..+...++-.++.- +.......+=+.++.|...++++-
T Consensus 601 ~~~~l~~~~~~l~~~~~~~-~~~~~~~e~~~~~~~l~~~~~~l~ 643 (908)
T COG0419 601 KLKELEERLSQLEELLQSL-ELSEAENELEEAEEELESELEKLN 643 (908)
T ss_pred HHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666 444444444455555555544444
No 116
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=85.28 E-value=19 Score=39.65 Aligned_cols=40 Identities=28% Similarity=0.513 Sum_probs=19.6
Q ss_pred HhHHHHHHhhhhhhhcCCCChHHH----HHHHHHHHHHHHHHHH
Q 003431 742 DDIDGSIRNMEHRIAHETLPLKEE----KQIIREIKQLKQRREQ 781 (820)
Q Consensus 742 EEIDarIKsLEyRIQHESLSLkEE----KKLLKEIKQLKkTREK 781 (820)
..+..+|..|+-+++.-.....++ +.+-++|.+|++....
T Consensus 250 ~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 250 SELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEE 293 (498)
T ss_pred CchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHh
Confidence 345555666555554332222222 3444666666666444
No 117
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=85.26 E-value=46 Score=36.24 Aligned_cols=67 Identities=12% Similarity=0.186 Sum_probs=30.4
Q ss_pred CChHHHHHHHHHHHHHHHHhhhHHHHHHH--------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 661 DDENLREQIKAAQSKVDEKTRSRDAIRDD--------IQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDS 727 (820)
Q Consensus 661 DDEkLKAKIDeAQkEIqKLNQaR~aIieE--------IKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdp 727 (820)
+++.+.+++..++..+..+......+... .....+.+..+..++..++.++..++..++..+..++.
T Consensus 90 ~~~~~~~~~~~~~~~l~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~l~~~ 164 (421)
T TIGR03794 90 FQPELRERLQESYQKLTQLQEQLEEVRNYTGRLKEGRERHFQKSKEALEETIGRLREELAALSREVGKQRGLLSR 164 (421)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555666666665555544443333221 11123334444445555555555554444444444333
No 118
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=85.00 E-value=22 Score=44.38 Aligned_cols=75 Identities=13% Similarity=0.387 Sum_probs=49.1
Q ss_pred ChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAI-------SDERSARESLKSKRQEIDSVQSRINM 734 (820)
Q Consensus 662 DEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALR-------aE~RqlR~eldEKRKELdpLQEaL~K 734 (820)
-.+|.+.++.+..+|+..++.-.++...++.....+.....+.+.|+ .+...+...+.-|.+++..+.-.|..
T Consensus 680 ~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~ 759 (1200)
T KOG0964|consen 680 LKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHK 759 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34678888888888888888888888888877766665544444444 44444445555555555555555544
Q ss_pred hh
Q 003431 735 MK 736 (820)
Q Consensus 735 LR 736 (820)
+.
T Consensus 760 ~~ 761 (1200)
T KOG0964|consen 760 LE 761 (1200)
T ss_pred HH
Confidence 44
No 119
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=84.85 E-value=26 Score=30.57 Aligned_cols=47 Identities=15% Similarity=0.256 Sum_probs=27.0
Q ss_pred HHHHHHHHhhcCCChHhHHHHHHhhhhhhhcCCC--ChHHHHHHHHHHHHH
Q 003431 727 SVQSRINMMKNAISVDDIDGSIRNMEHRIAHETL--PLKEEKQIIREIKQL 775 (820)
Q Consensus 727 pLQEaL~KLRNASSeEEIDarIKsLEyRIQHESL--SLkEEKKLLKEIKQL 775 (820)
.|...+..+. .....+...|...++.+.+++- =|.--|.++..+.+|
T Consensus 76 ~l~~q~~~l~--~~l~~l~~~~~~~e~~l~~~~~~e~L~~~~~i~~rl~~l 124 (127)
T smart00502 76 VLEQQLESLT--QKQEKLSHAINFTEEALNSGDPTELLLSKKLIIERLQNL 124 (127)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 3333333333 3567777888888888887553 344444555444443
No 120
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=84.83 E-value=27 Score=37.78 Aligned_cols=18 Identities=6% Similarity=0.196 Sum_probs=10.3
Q ss_pred CChHhHHHHHHhhhhhhh
Q 003431 739 ISVDDIDGSIRNMEHRIA 756 (820)
Q Consensus 739 SSeEEIDarIKsLEyRIQ 756 (820)
..+-.++++|+.|+.+|.
T Consensus 282 P~v~~l~~~i~~l~~~l~ 299 (444)
T TIGR03017 282 PQYKRAQAEINSLKSQLN 299 (444)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 345556666666666554
No 121
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=84.29 E-value=16 Score=32.31 Aligned_cols=58 Identities=14% Similarity=0.226 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSV 728 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpL 728 (820)
.|..||+.|-..|..+ ..++..+|.+-..|.++-..|+.+..+++.....-...++.|
T Consensus 8 ~LE~ki~~aveti~~L-------q~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 8 QLEEKIQQAVETIALL-------QMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555444 344444444444444555555555555554444444433333
No 122
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=84.19 E-value=51 Score=39.86 Aligned_cols=134 Identities=11% Similarity=0.245 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhc
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSAR-------ESLKSKRQEIDSVQSRINMMKN 737 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR-------~eldEKRKELdpLQEaL~KLRN 737 (820)
++..+.++..++......+..+......++..+..+-.+...||.+++.|+ ..+.+--.|-=+||+.+.-||.
T Consensus 39 l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 39 LENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQ 118 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333444444444333333333333333333333333333333333333333 3333344444467777777772
Q ss_pred -CCChHhHHHHHHhhhhhhhcCCCChHHHHHHHH-HHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHhhcc
Q 003431 738 -AISVDDIDGSIRNMEHRIAHETLPLKEEKQIIR-EIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSSMFS 815 (820)
Q Consensus 738 -ASSeEEIDarIKsLEyRIQHESLSLkEEKKLLK-EIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKEL~s 815 (820)
----|.+-+.|++|+ ||-.+|+ ++..+-+.|+.. ..++.+++..-..-++|=..|+|||-.
T Consensus 119 sQvefE~~Khei~rl~-----------Ee~~~l~~qlee~~rLk~ia------e~qleEALesl~~EReqk~~LrkEL~~ 181 (717)
T PF09730_consen 119 SQVEFEGLKHEIKRLE-----------EEIELLNSQLEEAARLKEIA------EKQLEEALESLKSEREQKNALRKELDQ 181 (717)
T ss_pred hHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123355666666654 3333331 222222222211 234778888777888899999999865
No 123
>PRK10698 phage shock protein PspA; Provisional
Probab=84.17 E-value=22 Score=36.57 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=11.5
Q ss_pred HhHHHHHHhhhhhhhcC
Q 003431 742 DDIDGSIRNMEHRIAHE 758 (820)
Q Consensus 742 EEIDarIKsLEyRIQHE 758 (820)
+.++.+|..+|.+.+-.
T Consensus 169 ~rmE~ki~~~Ea~aea~ 185 (222)
T PRK10698 169 ESFERRIDQMEAEAESH 185 (222)
T ss_pred HHHHHHHHHHHHHHhHh
Confidence 55677777777777654
No 124
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=84.12 E-value=49 Score=36.64 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=21.5
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 003431 660 YDDENLREQIKAAQSKVDEKTRSRDAIRDDIQ 691 (820)
Q Consensus 660 YDDEkLKAKIDeAQkEIqKLNQaR~aIieEIK 691 (820)
.|+..+.+.+..++.++..+...+..+.+.++
T Consensus 90 ld~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~ 121 (457)
T TIGR01000 90 YDNGNEENQKQLLEQQLDNLKDQKKSLDTLKQ 121 (457)
T ss_pred ECchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777888888877777766665555544443
No 125
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=84.05 E-value=15 Score=46.66 Aligned_cols=117 Identities=12% Similarity=0.246 Sum_probs=57.3
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 003431 658 PRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKN 737 (820)
Q Consensus 658 PRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRN 737 (820)
|-=+.-+|+.++|..... ....-++..++.-|.+-..+++-....+..|+...+.+...-...++.+.++++
T Consensus 163 PLsEp~~LKkkfD~IF~~--------tky~KAld~~kk~rkd~~~evk~~~~~l~~lk~~K~~~e~~~l~i~~~~~ki~~ 234 (1294)
T KOG0962|consen 163 PLSEPKNLKKKFDDIFSA--------TKYTKALDSLKKLRKDQSQEVKTKKQELEHLKTLKERAEVLRLNIHSGQRKIEK 234 (1294)
T ss_pred CCCChHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566789999887664 223333444444444444555544444444444443333333333333333331
Q ss_pred C-CChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 003431 738 A-ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQI 782 (820)
Q Consensus 738 A-SSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKV 782 (820)
- --+++|+.+|...+.+|..=-++|.|=-+++.+++.|+..|..+
T Consensus 235 ~ke~v~e~e~e~~~~~~~i~ei~~~~~el~k~~~~~~~l~~e~~~l 280 (1294)
T KOG0962|consen 235 SKEEVSELENELGPIEAKIEEIEKSLKELEKLLKQVKLLDSEHKNL 280 (1294)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 23444555555555555444445555555555555555554443
No 126
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=83.86 E-value=59 Score=37.43 Aligned_cols=27 Identities=15% Similarity=0.398 Sum_probs=13.2
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhHHHH
Q 003431 660 YDDENLREQIKAAQSKVDEKTRSRDAI 686 (820)
Q Consensus 660 YDDEkLKAKIDeAQkEIqKLNQaR~aI 686 (820)
|.-+.|.+.|..+..++....+...++
T Consensus 74 fqlddi~~qlr~~rtel~~a~~~k~~~ 100 (499)
T COG4372 74 FQLDDIRPQLRALRTELGTAQGEKRAA 100 (499)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666655555554443333333
No 127
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=83.81 E-value=22 Score=33.76 Aligned_cols=75 Identities=13% Similarity=0.240 Sum_probs=42.7
Q ss_pred ChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 662 DEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
+..+-.-|..+-...++-...|..+..++..++++...+...+..|..+...+...+.........|+..++.+.
T Consensus 33 ~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~ 107 (151)
T PF11559_consen 33 DVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLE 107 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555566666666666666666666666666666666555555555555555555444433
No 128
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.74 E-value=17 Score=45.36 Aligned_cols=20 Identities=40% Similarity=0.695 Sum_probs=13.7
Q ss_pred hHHhhhccccccCCCCCchhHHHH
Q 003431 488 KELEENMETEFTGEESDDLVCKEV 511 (820)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~ 511 (820)
.+|...|+-.|-+ +|||.-.
T Consensus 612 ~~l~~amefvFG~----tlVc~~~ 631 (1174)
T KOG0933|consen 612 DELKKAMEFVFGS----TLVCDSL 631 (1174)
T ss_pred HHHHHHHHHHhCc----eEEecCH
Confidence 4667777777754 7888654
No 129
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=83.61 E-value=28 Score=40.71 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 003431 665 LREQIKAAQSKVDEK 679 (820)
Q Consensus 665 LKAKIDeAQkEIqKL 679 (820)
++.++.+++.+++..
T Consensus 206 l~~~l~~aE~~l~~f 220 (754)
T TIGR01005 206 LSKQSRDAEAEVAAY 220 (754)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 130
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=83.40 E-value=36 Score=38.89 Aligned_cols=89 Identities=10% Similarity=0.192 Sum_probs=52.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cC-CChHhHHHHHHhhhhhhhcCCCChHHHHHH
Q 003431 694 RASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK----NA-ISVDDIDGSIRNMEHRIAHETLPLKEEKQI 768 (820)
Q Consensus 694 RAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR----NA-SSeEEIDarIKsLEyRIQHESLSLkEEKKL 768 (820)
...+.+...+|+.+..+++.|...++---.++..+++.|..++ ++ .+.++|-..+..++.+++.-.-.-.+-.++
T Consensus 272 ~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L 351 (563)
T TIGR00634 272 AEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEAL 351 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3333344444444444444444433322333445555544444 22 589999999999998888866666667777
Q ss_pred HHHHHHHHHHHHHH
Q 003431 769 IREIKQLKQRREQI 782 (820)
Q Consensus 769 LKEIKQLKkTREKV 782 (820)
-++++++++...+.
T Consensus 352 ~~el~~l~~~l~~~ 365 (563)
T TIGR00634 352 EEEVDKLEEELDKA 365 (563)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777765444
No 131
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.34 E-value=26 Score=40.21 Aligned_cols=148 Identities=14% Similarity=0.196 Sum_probs=84.1
Q ss_pred EEeccCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 654 LVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEA-AISDERSARESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 654 fVRVPRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKA-LRaE~RqlR~eldEKRKELdpLQEaL 732 (820)
|.++|+.+. ..|.+++.-|-.+.+.|..|..++.-++.++..+..++++ ++.=.++....+-.+|+-+..=.+.+
T Consensus 217 f~~i~~~~~----~~it~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~ 292 (439)
T KOG2911|consen 217 FSQIPSQDA----SIITEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERK 292 (439)
T ss_pred eccCCcccc----cCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHH
Confidence 477777743 2366777777788888888888888888777777666652 22222222222222222111111111
Q ss_pred HHhhcCCChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHh
Q 003431 733 NMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSS 812 (820)
Q Consensus 733 ~KLRNASSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKE 812 (820)
-..+ ..++.|-..|..-+. =|=+|+=++.=-..-+.+.+++..=.|+.+.|++-....++.+++...
T Consensus 293 ~~~l--~~l~~vl~~Id~s~~-----------nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~ 359 (439)
T KOG2911|consen 293 VSSL--NNLETVLSQIDNSQT-----------NKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDA 359 (439)
T ss_pred HHHH--HHHHHHHHHHHhhcc-----------cHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHH
Confidence 1111 123333333333221 233455555555555566666777777888888888888888888888
Q ss_pred hccccc
Q 003431 813 MFSSFL 818 (820)
Q Consensus 813 L~s~f~ 818 (820)
|.+.|.
T Consensus 360 la~~~~ 365 (439)
T KOG2911|consen 360 LASYNV 365 (439)
T ss_pred HhcCCC
Confidence 887663
No 132
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=83.32 E-value=14 Score=36.05 Aligned_cols=72 Identities=15% Similarity=0.224 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KL 735 (820)
.+.+||++=+.++.+++..-....-.+.-.|.++..+..++..++.++......+...++++..+.....++
T Consensus 53 ~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~ 124 (177)
T PF13870_consen 53 QLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKL 124 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444443333333333334444444444444444444444444444444444444433333
No 133
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=82.93 E-value=29 Score=33.71 Aligned_cols=94 Identities=13% Similarity=0.264 Sum_probs=53.9
Q ss_pred eccCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003431 656 KVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (820)
Q Consensus 656 RVPRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KL 735 (820)
|=++|.|= +..--..+...+..+.+.-.++.+.+.+.| +.|..||..+-.++.+..+..+..++++..++..+..+
T Consensus 26 KGws~sD~-M~vTrr~m~~A~~~v~kql~~vs~~l~~tK---khLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i 101 (126)
T PF07889_consen 26 KGWSFSDL-MFVTRRSMSDAVASVSKQLEQVSESLSSTK---KHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQI 101 (126)
T ss_pred cCCchhHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33444444 444444555555555555556666555544 34446666666666666666666777777777766666
Q ss_pred hcCCChHhHHHHHHhhhhhh
Q 003431 736 KNAISVDDIDGSIRNMEHRI 755 (820)
Q Consensus 736 RNASSeEEIDarIKsLEyRI 755 (820)
+ ..++.|.+.+..||.+|
T Consensus 102 ~--~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 102 G--DDVDSVQQMVEGLEGKI 119 (126)
T ss_pred H--HHHHHHHHHHHHHHHHH
Confidence 6 24455555555555554
No 134
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=82.91 E-value=47 Score=40.42 Aligned_cols=79 Identities=23% Similarity=0.340 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhh-cCCChHhHHHHHHhhhhhhhcCC-CChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhHH
Q 003431 724 EIDSVQSRINMMK-NAISVDDIDGSIRNMEHRIAHET-LPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQ 801 (820)
Q Consensus 724 ELdpLQEaL~KLR-NASSeEEIDarIKsLEyRIQHES-LSLkEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKEA 801 (820)
+++.|.+.|++-. .+.+.-+|..+|..|.--+.-.+ .|=.++| +.|..|+++-+|=+ -++|+ --.
T Consensus 650 KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evaka~~~pd~~~k---~kieal~~qik~~~---------~~a~~-~~~ 716 (762)
T PLN03229 650 KIESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEK---EKIEALEQQIKQKI---------AEALN-SSE 716 (762)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCcchH---HHHHHHHHHHHHHH---------HHHhc-cHh
Confidence 3444444443332 23333335555555555554444 3344444 45555555422222 12222 124
Q ss_pred HHHHHHHHHHhhcc
Q 003431 802 IEEKMKVVLSSMFS 815 (820)
Q Consensus 802 IQdQVKlLkKEL~s 815 (820)
+++++..|..++.+
T Consensus 717 lkek~e~l~~e~~~ 730 (762)
T PLN03229 717 LKEKFEELEAELAA 730 (762)
T ss_pred HHHHHHHHHHHHHH
Confidence 66777777777744
No 135
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=82.75 E-value=66 Score=34.86 Aligned_cols=69 Identities=10% Similarity=0.131 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 003431 666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEID-SVQSRINM 734 (820)
Q Consensus 666 KAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELd-pLQEaL~K 734 (820)
+.+...++++...+...+...+....++..-|++|+.+=+.++.+.......-..+|+++. .++..|..
T Consensus 49 ~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~d 118 (309)
T PF09728_consen 49 QKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKD 118 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555556666777777777777777766666666666654 44444433
No 136
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=82.74 E-value=48 Score=34.89 Aligned_cols=65 Identities=20% Similarity=0.419 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 668 QIKAAQSKVDEKTRSRDAIRDDIQTIRAS---YKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 668 KIDeAQkEIqKLNQaR~aIieEIKAKRAE---RsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL 732 (820)
+|..+...+..+...+..|..++...+.+ +.+|..++..|..++...-.++.....++..|-..+
T Consensus 2 ~i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iI 69 (230)
T PF10146_consen 2 KIKEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENII 69 (230)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666665543 345555555555444444444444433333333333
No 137
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=82.72 E-value=20 Score=39.60 Aligned_cols=82 Identities=15% Similarity=0.221 Sum_probs=44.0
Q ss_pred EeccCCCChH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Q 003431 655 VKVPRYDDEN--LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDE--------RSARESLKSKRQE 724 (820)
Q Consensus 655 VRVPRYDDEk--LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~--------RqlR~eldEKRKE 724 (820)
+.+++-+++. |..-|+.+-..+..+...=..+..+-..++.+...+..||+.+.... ..+..++++|+..
T Consensus 116 v~L~~~~~p~e~i~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~K 195 (342)
T PF06632_consen 116 VKLKQVDNPAEVIRELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAK 195 (342)
T ss_dssp EE-EE-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444444443 55555544444444433322333333334444444444444443333 3556799999999
Q ss_pred HHHHHHHHHHhh
Q 003431 725 IDSVQSRINMMK 736 (820)
Q Consensus 725 LdpLQEaL~KLR 736 (820)
|+.||..|..++
T Consensus 196 IR~lq~~L~~~~ 207 (342)
T PF06632_consen 196 IRELQRLLASAK 207 (342)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999998777
No 138
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=82.66 E-value=36 Score=33.96 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=11.9
Q ss_pred ChHhHHHHHHhhhhhhhc
Q 003431 740 SVDDIDGSIRNMEHRIAH 757 (820)
Q Consensus 740 SeEEIDarIKsLEyRIQH 757 (820)
+.+.+..+|..++.+.+-
T Consensus 166 ~~er~e~ki~~~ea~a~a 183 (221)
T PF04012_consen 166 SFERMEEKIEEMEARAEA 183 (221)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556677777777766553
No 139
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=82.63 E-value=31 Score=32.60 Aligned_cols=74 Identities=9% Similarity=0.265 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEY--------------AEKLEAAISDERSARESLKSKRQEIDSV 728 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsEL--------------IeQLKALRaE~RqlR~eldEKRKELdpL 728 (820)
..+..+|..+...+.........+...++.......+. +..|..+|.+...++..+..-+.+.+..
T Consensus 6 ~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a 85 (132)
T PF07926_consen 6 SSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESA 85 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677777766666666666666666555333322 4444455555555555555555555555
Q ss_pred HHHHHHhh
Q 003431 729 QSRINMMK 736 (820)
Q Consensus 729 QEaL~KLR 736 (820)
+..|...+
T Consensus 86 ~~~l~~~e 93 (132)
T PF07926_consen 86 KAELEESE 93 (132)
T ss_pred HHHHHHHH
Confidence 55554444
No 140
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=82.59 E-value=11 Score=38.07 Aligned_cols=67 Identities=15% Similarity=0.315 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSAR----ESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR----~eldEKRKELdpLQEaL 732 (820)
++++|..++.+|......|..- .+...+..++.+|..+++.|..++..++ ..+..+++++..+++++
T Consensus 81 ~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~a 151 (188)
T PF03962_consen 81 LEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAA 151 (188)
T ss_pred HHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333222 3333344444455555555555555444 23444444444444444
No 141
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=82.41 E-value=36 Score=39.60 Aligned_cols=42 Identities=14% Similarity=0.251 Sum_probs=32.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 695 ASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 695 AERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
.++.++-..|+.|..-+.-.+..+.+.|+|-+.||-.|.|++
T Consensus 383 LEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k 424 (527)
T PF15066_consen 383 LEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIK 424 (527)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 444455556666666666777788888999999999999988
No 142
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=82.34 E-value=12 Score=41.34 Aligned_cols=81 Identities=15% Similarity=0.343 Sum_probs=60.9
Q ss_pred EEeccCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 654 LVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS------YKEYAEKLEAAISDERSARESLKSKRQEIDS 727 (820)
Q Consensus 654 fVRVPRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAE------RsELIeQLKALRaE~RqlR~eldEKRKELdp 727 (820)
.+.+ -++.+.++++++.+..++++++.....|...+...+.. ..+...+++.++..+..++..+.+..+++..
T Consensus 322 ~i~v-g~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 400 (451)
T PF03961_consen 322 EIEV-GVDRPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKE 400 (451)
T ss_pred EEEE-ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 56668899999999999998887777777776665542 2356677777788888888888888888888
Q ss_pred HHHHHHHh
Q 003431 728 VQSRINMM 735 (820)
Q Consensus 728 LQEaL~KL 735 (820)
|++.|.++
T Consensus 401 l~~~l~~~ 408 (451)
T PF03961_consen 401 LKEELERS 408 (451)
T ss_pred HHHHHHhh
Confidence 88888776
No 143
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.07 E-value=56 Score=38.80 Aligned_cols=72 Identities=15% Similarity=0.276 Sum_probs=38.5
Q ss_pred CChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAI-------SDERSARESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 661 DDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALR-------aE~RqlR~eldEKRKELdpLQEaL 732 (820)
|+-+.-.+|+...++.+.|++.-+++..++..+.+....|.+..-.|. .+++.+...+++|.++.-.+-..|
T Consensus 325 derE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qL 403 (654)
T KOG4809|consen 325 DERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQL 403 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444566667777777666666666666666555555555544333222 233334455566555544444433
No 144
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=82.05 E-value=7.1 Score=43.31 Aligned_cols=63 Identities=17% Similarity=0.286 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS----YKEYAEKLEAAISDERSARESLKSKRQEIDS 727 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAE----RsELIeQLKALRaE~RqlR~eldEKRKELdp 727 (820)
+..+..+++.+++.++..|..+..++..++.. +.+++++++.|+++.+.+...+.+...++..
T Consensus 35 ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 35 LDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666777777776666553311 3455555555555555554444444443333
No 145
>PLN02678 seryl-tRNA synthetase
Probab=81.86 E-value=6.8 Score=44.34 Aligned_cols=68 Identities=9% Similarity=0.211 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIR---ASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKR---AERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL 732 (820)
+..+...++.+++.++..|.++..++..++ .++.+++++++.|+.+.+.+...+.+..+++..+...|
T Consensus 38 ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~i 108 (448)
T PLN02678 38 LDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTI 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344455566667777777777776665533 34445666666666666666655555555555444433
No 146
>PRK12704 phosphodiesterase; Provisional
Probab=81.70 E-value=57 Score=37.71 Aligned_cols=28 Identities=18% Similarity=0.394 Sum_probs=15.0
Q ss_pred HhHHHHHHhhhhhhhc-CCCChHHHHHHH
Q 003431 742 DDIDGSIRNMEHRIAH-ETLPLKEEKQII 769 (820)
Q Consensus 742 EEIDarIKsLEyRIQH-ESLSLkEEKKLL 769 (820)
++++..+.....+++. ..||..|=|++|
T Consensus 131 ~~~~~~~~~~~~~l~~~a~lt~~ea~~~l 159 (520)
T PRK12704 131 EELEELIEEQLQELERISGLTAEEAKEIL 159 (520)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3444444444444444 347777766655
No 147
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=81.51 E-value=32 Score=33.47 Aligned_cols=27 Identities=7% Similarity=0.366 Sum_probs=13.9
Q ss_pred HHHHHHhhcC-CChHhHHHHHHhhhhhh
Q 003431 729 QSRINMMKNA-ISVDDIDGSIRNMEHRI 755 (820)
Q Consensus 729 QEaL~KLRNA-SSeEEIDarIKsLEyRI 755 (820)
..+..+||.+ ...+.++++++.|+.+.
T Consensus 97 ~e~~ekl~e~d~~ae~~eRkv~~le~~~ 124 (143)
T PF12718_consen 97 KETTEKLREADVKAEHFERKVKALEQER 124 (143)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhH
Confidence 3344444522 34566666666666543
No 148
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=81.46 E-value=7.1 Score=43.39 Aligned_cols=69 Identities=16% Similarity=0.298 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRA---SYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKAKRA---ERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL 732 (820)
++..+...++.+++.++..|.++..++..++. ++.+++++.+.|+.+.+.+...+.+-.+++..+...|
T Consensus 32 ~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 32 ELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35556666777777788888877777766332 3445666666666666665555555555544444433
No 149
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=81.24 E-value=95 Score=34.49 Aligned_cols=17 Identities=12% Similarity=0.214 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q 003431 665 LREQIKAAQSKVDEKTR 681 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQ 681 (820)
+++++..++.++..+..
T Consensus 102 ~~~~~~~~~~~~~rL~a 118 (457)
T TIGR01000 102 LEQQLDNLKDQKKSLDT 118 (457)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 150
>PRK10698 phage shock protein PspA; Provisional
Probab=81.06 E-value=12 Score=38.53 Aligned_cols=14 Identities=29% Similarity=0.558 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhh
Q 003431 800 DQIEEKMKVVLSSM 813 (820)
Q Consensus 800 EAIQdQVKlLkKEL 813 (820)
+.|.+.+--||..|
T Consensus 204 ~~ve~ELa~LK~~~ 217 (222)
T PRK10698 204 DEISEQLAALKAKM 217 (222)
T ss_pred chHHHHHHHHHHHh
Confidence 34666666666555
No 151
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=81.05 E-value=12 Score=33.62 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003431 701 AEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (820)
Q Consensus 701 IeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KL 735 (820)
..++-.|-.+.+.+...++.-+.+.+.+...++++
T Consensus 28 vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~ 62 (108)
T PF02403_consen 28 VDEIIELDQERRELQQELEELRAERNELSKEIGKL 62 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 152
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=80.96 E-value=45 Score=38.41 Aligned_cols=35 Identities=17% Similarity=0.565 Sum_probs=21.7
Q ss_pred CChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHh
Q 003431 739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQIS 783 (820)
Q Consensus 739 SSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKVi 783 (820)
.+++++..+.+.|.+ ||++++++++.|++.+..+-
T Consensus 176 ~~~~~~~~e~~~l~~----------eE~~L~q~lk~le~~~~~l~ 210 (447)
T KOG2751|consen 176 VSEEDLLKELKNLKE----------EEERLLQQLEELEKEEAELD 210 (447)
T ss_pred cchHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 356666655555543 67777777777776665543
No 153
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.94 E-value=57 Score=39.21 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 699 EYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 699 ELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
.|+.++.+|...+.++|...+++++|+..|+..+.+|.
T Consensus 100 tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~ 137 (660)
T KOG4302|consen 100 TLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLC 137 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999999999999999999999999998
No 154
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=80.80 E-value=29 Score=30.74 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 684 DAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN 733 (820)
Q Consensus 684 ~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~ 733 (820)
.+.+..+..++.+..+|..+-.+|..+...++.....-+.+-...+..|+
T Consensus 14 ~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 14 QQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777777777777666666665555555443
No 155
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=80.73 E-value=25 Score=36.53 Aligned_cols=64 Identities=5% Similarity=0.133 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSV 728 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpL 728 (820)
++..+..+...+..+...+..+.+.-+-...+-..|..++..|..+...+...++.-++.+..|
T Consensus 65 l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 65 LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 4444445555555555555555444444444444555555555555554444444433333333
No 156
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=80.58 E-value=72 Score=32.69 Aligned_cols=147 Identities=10% Similarity=0.180 Sum_probs=87.2
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 003431 660 YDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISD-ERSARESLKSKRQEIDSVQSRINMMKNA 738 (820)
Q Consensus 660 YDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE-~RqlR~eldEKRKELdpLQEaL~KLRNA 738 (820)
+.....-.++..+-.+++.+...|..+...++. +..-+.+-.-|..+... ...+...+.+.++.+++++..|..-..
T Consensus 137 ~~~~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~-~~~~d~i~~~l~~~~~~~~~~~~~lf~~eL~k~~~~~~~i~~~~~- 214 (296)
T PF13949_consen 137 PQVSEVIRQLRELLNKLEELKKEREELLEQLKE-KLQNDDISKLLSELNKNGSADFEALFEEELKKFDPLQNRIQQNLS- 214 (296)
T ss_dssp GSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 344667788888999999999999999999987 44444444444433220 124667888888888888887766552
Q ss_pred CChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHh
Q 003431 739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSS 812 (820)
Q Consensus 739 SSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKE 812 (820)
.-+.|-..|..+..+.....=...+-++.=+-+..|... ..+|...+..+.+-+.=+..+...+..+...
T Consensus 215 -~Q~~ll~~i~~~~~~~~~~~~~~~~~~~r~~~~~~l~~a---~~~y~el~~~l~eG~~FY~~L~~~~~~l~~~ 284 (296)
T PF13949_consen 215 -KQEELLQEIQEANEEFAQSRKSDQEQKERESALQRLEAA---YDAYKELSSNLEEGLKFYNDLLEILNKLQQK 284 (296)
T ss_dssp -HHHHHHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666654442222222222223444444 5666677777777776666666666666544
No 157
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=80.57 E-value=21 Score=38.37 Aligned_cols=42 Identities=26% Similarity=0.420 Sum_probs=19.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 695 ASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 695 AERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
..+.++.++|+.+..+...++..+.++..+.+.+|+.|.+|+
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le 176 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLE 176 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444
No 158
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=80.42 E-value=76 Score=35.05 Aligned_cols=141 Identities=16% Similarity=0.198 Sum_probs=87.3
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003431 660 YDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTI----RASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (820)
Q Consensus 660 YDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAK----RAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KL 735 (820)
+..+.|..|+..+..+-..|......+..+-... +.-..+...+|..+..+...+..++..|..+....|+.|.+|
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~L 239 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSL 239 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999888777766666655332221 122334568888899999999999999999888888888777
Q ss_pred hcCCChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHH
Q 003431 736 KNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLS 811 (820)
Q Consensus 736 RNASSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkK 811 (820)
. ++|..|+.|.+.-+.-=.|=.+.|..-+. .++.-...+..+|.|-.+.++-.-.-|+++|.+++
T Consensus 240 l---------sqivdlQ~r~k~~~~EnEeL~q~L~~ske--~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 240 L---------SQIVDLQQRCKQLAAENEELQQHLQASKE--SQRQLQAELQELQDKYAECMAMLHEAQEELKTLRK 304 (306)
T ss_pred H---------HHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 6 23444444444333221111222222222 22223444566666666777666677888887775
No 159
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=80.30 E-value=26 Score=38.41 Aligned_cols=52 Identities=17% Similarity=0.106 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 685 AIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 685 aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
+...=.+++|+++..+-.+++.|..++++||....+--+||+-|++.|..++
T Consensus 238 AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 238 AATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444457789999999999999999999999999999999999999887665
No 160
>PRK10884 SH3 domain-containing protein; Provisional
Probab=80.21 E-value=19 Score=37.14 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAI 686 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aI 686 (820)
++.++.++++++.++++.-..+
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~ 112 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNI 112 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555544444333333
No 161
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=79.72 E-value=18 Score=44.15 Aligned_cols=99 Identities=18% Similarity=0.196 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHHHHHhhhhhhhcCCCCh
Q 003431 683 RDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPL 762 (820)
Q Consensus 683 R~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEIDarIKsLEyRIQHESLSL 762 (820)
|++++.++.+++....+.++-+--|..-+..++...+....+++.|-..|+.-| .+-.+++.++..+..-+++-.--|
T Consensus 835 ri~~~~K~~~l~kns~k~~ei~s~lke~r~e~~~~~~~~~~~id~lv~~IK~~~--~tq~~~~~~~d~~~~~~e~~~~~l 912 (1259)
T KOG0163|consen 835 RIAGIRKINALLKNSLKTIEILSRLKEGREEIISGANSTYRQIDDLVKKIKMPR--ITQREMNSEYDVAVKNYEKLVKRL 912 (1259)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhcchHHHHhhhhhHHHHHHHHHHHhcccc--cchHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555444444443333333333444444444555555555443222 355666666666665555555555
Q ss_pred H-HHHHHHHHHHHHHHHHHHHh
Q 003431 763 K-EEKQIIREIKQLKQRREQIS 783 (820)
Q Consensus 763 k-EEKKLLKEIKQLKkTREKVi 783 (820)
. .|+|.+.|.+.|.++-+...
T Consensus 913 ~sk~~q~~~e~er~rk~qE~~E 934 (1259)
T KOG0163|consen 913 DSKEQQQIEELERLRKIQELAE 934 (1259)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 5 67777766666655544433
No 162
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.54 E-value=67 Score=37.60 Aligned_cols=47 Identities=15% Similarity=0.326 Sum_probs=25.7
Q ss_pred ChHhHHHHHHhhhhh--hhcCCCChHHH----HHHHHHH-HHHHHHHHHHhhcc
Q 003431 740 SVDDIDGSIRNMEHR--IAHETLPLKEE----KQIIREI-KQLKQRREQISSSI 786 (820)
Q Consensus 740 SeEEIDarIKsLEyR--IQHESLSLkEE----KKLLKEI-KQLKkTREKViANA 786 (820)
-+.+|-+||..|--+ |+.+.+.+.|. ++.++|| ..|++.-+.+..+.
T Consensus 429 ~Pnq~k~Rl~~L~e~~r~q~~~~~~~~~~~iD~~~~~e~~e~lt~~~e~l~~Lv 482 (508)
T KOG3091|consen 429 APNQLKARLDELYEILRMQNSQLKLQESYWIDFDKLIEMKEHLTQEQEALTKLV 482 (508)
T ss_pred ChHHHHHHHHHHHHHHHhhcchhccccceeechhhhHHHHHHHHHHHHHHHHHH
Confidence 457888888777654 34446666664 3344555 44444433444333
No 163
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=79.34 E-value=75 Score=36.63 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=12.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 691 QTIRASYKEYAEKLEAAISDERSARESLKS 720 (820)
Q Consensus 691 KAKRAERsELIeQLKALRaE~RqlR~eldE 720 (820)
.+.+.+|.....+|...+.+.+..+..+.+
T Consensus 98 ~~~e~er~~~~~El~~~r~e~~~v~~~~~~ 127 (499)
T COG4372 98 RAAETEREAARSELQKARQEREAVRQELAA 127 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444433333
No 164
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=79.03 E-value=36 Score=42.52 Aligned_cols=109 Identities=16% Similarity=0.277 Sum_probs=64.2
Q ss_pred cCceeEEeccCCC-ChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 003431 649 QPFYFLVKVPRYD-DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARE---SLKSKRQE 724 (820)
Q Consensus 649 hsFYYfVRVPRYD-DEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~---eldEKRKE 724 (820)
..| |++..-.=+ +.-+...|..+..+|..++..+..+.++++..+..+.+...++..++.+...+.. .+.+++..
T Consensus 618 ~~f-~~~~~~l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ 696 (1072)
T KOG0979|consen 618 RNF-FSVSPVLEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKER 696 (1072)
T ss_pred hhh-hccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455 555533333 3344555666667777777777788888888888888888888877777776665 34444445
Q ss_pred HHHHHHHHHHhh----c---CCChHhHHHHHHhhhhhhhcC
Q 003431 725 IDSVQSRINMMK----N---AISVDDIDGSIRNMEHRIAHE 758 (820)
Q Consensus 725 LdpLQEaL~KLR----N---ASSeEEIDarIKsLEyRIQHE 758 (820)
+..+...|...+ . ..=.+.=+.+|+.+.|.++-.
T Consensus 697 ie~~~~~l~~qkee~~~~~~~~I~~~~~~~~~~~~~~~~~~ 737 (1072)
T KOG0979|consen 697 IENLVVDLDRQEEEYAASEAKKILDTEDMRIQSIRWHLELT 737 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 555544444444 0 011112233466666666543
No 165
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=79.01 E-value=30 Score=41.97 Aligned_cols=117 Identities=15% Similarity=0.250 Sum_probs=64.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------------CCChHhHHHHHHhhhhhhhcC
Q 003431 691 QTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKN------------AISVDDIDGSIRNMEHRIAHE 758 (820)
Q Consensus 691 KAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRN------------ASSeEEIDarIKsLEyRIQHE 758 (820)
+.++.++..|..+++.++.+...++..+.++--.+..+++...+|.. ....+-+..+|-.|+.+++.
T Consensus 461 ~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k- 539 (775)
T PF10174_consen 461 KERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEK- 539 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHH-
Confidence 34455666667777777777777776666666666666665555551 02334444455555555555
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhhccc-----------chhHHHHhhhhhHHHHHHHHHHHHhhc
Q 003431 759 TLPLKEEKQIIREIKQLKQRREQISSSIG-----------EHDEVQLAFDQKDQIEEKMKVVLSSMF 814 (820)
Q Consensus 759 SLSLkEEKKLLKEIKQLKkTREKViANAA-----------mQAKIQdSLDQKEAIQdQVKlLkKEL~ 814 (820)
+...-++-.+|..|++- |..++. ..+-+..+.-.|....-+++.|.++|+
T Consensus 540 ---~~~~~e~~~r~~~Le~e---v~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeLe 600 (775)
T PF10174_consen 540 ---LRANAELRDRIQQLEQE---VTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKELE 600 (775)
T ss_pred ---HHhCHhhcchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33333444566666653 333321 112234555666677777777777754
No 166
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=79.00 E-value=14 Score=40.08 Aligned_cols=148 Identities=11% Similarity=0.193 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHh
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDD 743 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEE 743 (820)
.|+..+.+++....+-=..=.++..+...+.=+.+-|..+|..+...+.+++..+.+|..+++.++..+..|+. -.++
T Consensus 81 ~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~--e~~~ 158 (302)
T PF09738_consen 81 DLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLRE--ELDE 158 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 45555555555544443333445555555555566666677777777777777777888888877777777772 4556
Q ss_pred HHHHHHhhhhhhhcCCCChHHHHHHHHHHHH----------HHHHHHH--Hhhcc---cchhHHHHhhhhhHHHHHHHHH
Q 003431 744 IDGSIRNMEHRIAHETLPLKEEKQIIREIKQ----------LKQRREQ--ISSSI---GEHDEVQLAFDQKDQIEEKMKV 808 (820)
Q Consensus 744 IDarIKsLEyRIQHESLSLkEEKKLLKEIKQ----------LKkTREK--ViANA---AmQAKIQdSLDQKEAIQdQVKl 808 (820)
|.+.|+.....|+---|=|..+ ----++.. ..=+++. +..-+ ..=-+++.-+++|+.+++||+.
T Consensus 159 Lre~L~~rdeli~khGlVlv~~-~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~k 237 (302)
T PF09738_consen 159 LREQLKQRDELIEKHGLVLVPD-ATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRK 237 (302)
T ss_pred HHHHHHHHHHHHHHCCeeeCCC-CCCCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666555555443333332 10001000 0000110 11111 1112466677889999999999
Q ss_pred HHHhhc
Q 003431 809 VLSSMF 814 (820)
Q Consensus 809 LkKEL~ 814 (820)
|+.+|+
T Consensus 238 lk~qLe 243 (302)
T PF09738_consen 238 LKLQLE 243 (302)
T ss_pred HHHHHH
Confidence 998885
No 167
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=78.90 E-value=47 Score=42.30 Aligned_cols=98 Identities=12% Similarity=0.275 Sum_probs=74.2
Q ss_pred CChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cC
Q 003431 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK--NA 738 (820)
Q Consensus 661 DDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR--NA 738 (820)
.-..+..++..++..-.++.+.+..+.....+.|..+..+.+.+.+|+++...+......+..++..+++ +++.+ .+
T Consensus 582 ~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e-l~r~~~e~~ 660 (1317)
T KOG0612|consen 582 ENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE-LKRENQERI 660 (1317)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHH
Confidence 3446778888888887888888888888888888899999999999999999999999998888888888 76665 11
Q ss_pred C------ChHhHHHHHHhhhhhhhcCC
Q 003431 739 I------SVDDIDGSIRNMEHRIAHET 759 (820)
Q Consensus 739 S------SeEEIDarIKsLEyRIQHES 759 (820)
+ -...++.+.+.++.+.|+.+
T Consensus 661 ~~~ek~~~e~~~e~~lk~~q~~~eq~~ 687 (1317)
T KOG0612|consen 661 SDSEKEALEIKLERKLKMLQNELEQEN 687 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 22245555666666665543
No 168
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=78.90 E-value=48 Score=34.54 Aligned_cols=88 Identities=13% Similarity=0.292 Sum_probs=40.7
Q ss_pred CceeEEeccCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 003431 650 PFYFLVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDER--SARESLKSKRQEIDS 727 (820)
Q Consensus 650 sFYYfVRVPRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~R--qlR~eldEKRKELdp 727 (820)
+..||++.-.|+-+. .+.+..++.+|..+ .+++++++..++..-++++.|-.-+. +++..+.+-+++.+-
T Consensus 63 qKIY~a~QDqF~~~~-~eel~~ld~~i~~l-------~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~ 134 (201)
T KOG4603|consen 63 QKIYFADQDQFDMVS-DEELQVLDGKIVAL-------TEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAG 134 (201)
T ss_pred eeeEeecHHhhcCCC-hHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 336999998888542 12233334443332 33344444444444444444433221 333334444444444
Q ss_pred HHHHHHHhh---cCCChHhHH
Q 003431 728 VQSRINMMK---NAISVDDID 745 (820)
Q Consensus 728 LQEaL~KLR---NASSeEEID 745 (820)
..+.|.++| +.-++++-.
T Consensus 135 ~~erl~~~k~g~~~vtpedk~ 155 (201)
T KOG4603|consen 135 YRERLKNIKAGTNHVTPEDKE 155 (201)
T ss_pred HHHHHHHHHHhcccCCHHHHH
Confidence 444555555 334555544
No 169
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=78.88 E-value=81 Score=39.58 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=16.4
Q ss_pred ChhhhhcCccccccCCCCcceEE
Q 003431 104 SAKEAELGDQKFESGGAESGTVV 126 (820)
Q Consensus 104 ~~ke~~~gd~~~es~~~~sg~v~ 126 (820)
||++++.|-.---+|+.--|+|.
T Consensus 2 s~r~lkvG~RVevtgknl~G~Va 24 (1243)
T KOG0971|consen 2 SPRSLKVGTRVEVTGKNLQGTVA 24 (1243)
T ss_pred CCccccccceEEeccCCccceEE
Confidence 67778888776666766677754
No 170
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=78.80 E-value=2.3 Score=43.37 Aligned_cols=66 Identities=12% Similarity=0.393 Sum_probs=52.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhcCCChHhHHHHHHhhhhhhhcCCCCh
Q 003431 695 ASYKEYAEKLEAAISDERSARESLKS--KRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPL 762 (820)
Q Consensus 695 AERsELIeQLKALRaE~RqlR~eldE--KRKELdpLQEaL~KLRNASSeEEIDarIKsLEyRIQHESLSL 762 (820)
.+..++..+|+.++.+...|+..+++ +.+++=.++..|.++| .-.|.+..+++.|..|+..++|+|
T Consensus 132 ~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~--~eIe~~~~~~~~l~~~v~~sti~i 199 (262)
T PF14257_consen 132 EQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVR--SEIEQLEGQLKYLDDRVDYSTITI 199 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhceEEEEE
Confidence 45556677788888888888887775 4667778888888888 478889999999999999999755
No 171
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=78.71 E-value=97 Score=35.83 Aligned_cols=101 Identities=12% Similarity=0.273 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH-------HHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQE--------ID-------SVQ 729 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKE--------Ld-------pLQ 729 (820)
+.+++.+|.+++..+-..-..=.++++..-++..+|..++..+..+...++..+.+.++. +. .|+
T Consensus 150 ~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLe 229 (446)
T KOG4438|consen 150 LDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLE 229 (446)
T ss_pred HHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Confidence 445555566666655444444466667777777778888877777777776655443222 11 222
Q ss_pred HHHHHhhc--CCChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHH
Q 003431 730 SRINMMKN--AISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREI 772 (820)
Q Consensus 730 EaL~KLRN--ASSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEI 772 (820)
+....|+. -.|++.|-..|..+-..|+- ||..+.+.
T Consensus 230 e~~~~LktqIV~sPeKL~~~leemk~~l~k-------~k~~~~~l 267 (446)
T KOG4438|consen 230 ENANCLKTQIVQSPEKLKEALEEMKDLLQK-------EKSAMVEL 267 (446)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 23333441 26999999999888888776 55555554
No 172
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=78.55 E-value=14 Score=41.57 Aligned_cols=35 Identities=11% Similarity=0.128 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASY 697 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAER 697 (820)
+....+|.+++++|..+...+..+..++...++++
T Consensus 67 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 67 RPDPERLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444666666666666655555555555555444
No 173
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=78.53 E-value=1.1e+02 Score=36.37 Aligned_cols=30 Identities=3% Similarity=0.169 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003431 685 AIRDDIQTIRASYKEYAEKLEAAISDERSA 714 (820)
Q Consensus 685 aIieEIKAKRAERsELIeQLKALRaE~Rql 714 (820)
++.+++..++.++...+.++..|...+..+
T Consensus 33 qmseev~~L~eEk~~~~~~V~eLE~sL~eL 62 (617)
T PF15070_consen 33 QMSEEVRTLKEEKEHDISRVQELERSLSEL 62 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333333
No 174
>PRK11546 zraP zinc resistance protein; Provisional
Probab=78.29 E-value=18 Score=35.89 Aligned_cols=55 Identities=22% Similarity=0.287 Sum_probs=29.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 672 AQSKVDEKTRSRDAIRDDIQTIRASYKEY-------AEKLEAAISDERSARESLKSKRQEID 726 (820)
Q Consensus 672 AQkEIqKLNQaR~aIieEIKAKRAERsEL-------IeQLKALRaE~RqlR~eldEKRKELd 726 (820)
+++-.++....-..++.++.++|.+++.| ..++++|..|...+|..+.++|-+++
T Consensus 52 ~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 52 WQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444455666666666666655 34566666666666665555554433
No 175
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=78.17 E-value=65 Score=39.94 Aligned_cols=15 Identities=13% Similarity=0.377 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhhcc
Q 003431 801 QIEEKMKVVLSSMFS 815 (820)
Q Consensus 801 AIQdQVKlLkKEL~s 815 (820)
..|+|++++|.-+|+
T Consensus 390 erqeQidelKn~if~ 404 (1265)
T KOG0976|consen 390 ERQEQIDELKNHIFR 404 (1265)
T ss_pred HHHHHHHHHHHhhhh
Confidence 455566666655553
No 176
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=77.89 E-value=12 Score=41.49 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=14.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHhHHHHHHHHH
Q 003431 676 VDEKTRSRDAIRDDIQTIRASYKEYAEKLE 705 (820)
Q Consensus 676 IqKLNQaR~aIieEIKAKRAERsELIeQLK 705 (820)
|-.+-+.|.++..++..+|++|..+..+++
T Consensus 32 i~~ld~~~r~~~~~~~~l~~erN~~sk~i~ 61 (418)
T TIGR00414 32 LIALDDERKKLLSEIEELQAKRNELSKQIG 61 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555554444443
No 177
>PLN02320 seryl-tRNA synthetase
Probab=77.42 E-value=13 Score=42.88 Aligned_cols=15 Identities=7% Similarity=0.120 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 003431 697 YKEYAEKLEAAISDE 711 (820)
Q Consensus 697 RsELIeQLKALRaE~ 711 (820)
++.++.+++.|++++
T Consensus 102 ~r~~~~~~~~lr~er 116 (502)
T PLN02320 102 MLALQKEVERLRAER 116 (502)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 178
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=77.24 E-value=1.3e+02 Score=36.32 Aligned_cols=113 Identities=14% Similarity=0.258 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cC---------CChHhHHHHHHhhhhhhhcCCCChHHHH-
Q 003431 701 AEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK----NA---------ISVDDIDGSIRNMEHRIAHETLPLKEEK- 766 (820)
Q Consensus 701 IeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR----NA---------SSeEEIDarIKsLEyRIQHESLSLkEEK- 766 (820)
.+++..++.++...+..+..-..|...|...+.+-. .+ .-....|..|+.|-.-|+|---+|.+|.
T Consensus 234 ~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e 313 (629)
T KOG0963|consen 234 AAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEERE 313 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444445555555555554433 11 1222355667777666666554554443
Q ss_pred HHHHHHHHHHHHHH-HHhhcccchhHHHHhhhhhHHHHHHHHHHHHhhc
Q 003431 767 QIIREIKQLKQRRE-QISSSIGEHDEVQLAFDQKDQIEEKMKVVLSSMF 814 (820)
Q Consensus 767 KLLKEIKQLKkTRE-KViANAAmQAKIQdSLDQKEAIQdQVKlLkKEL~ 814 (820)
..-.+|++|++.-. +....-.++.+++.- --++.|...+++||.-=|
T Consensus 314 ~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk~ief 361 (629)
T KOG0963|consen 314 KHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILKAIEF 361 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHHhhc
Confidence 22345666655422 222223344444433 347788888888876444
No 179
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=77.04 E-value=17 Score=45.61 Aligned_cols=80 Identities=9% Similarity=0.293 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHhhc-------------CCChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHH-Hh
Q 003431 718 LKSKRQEIDSVQSRINMMKN-------------AISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQ-IS 783 (820)
Q Consensus 718 ldEKRKELdpLQEaL~KLRN-------------ASSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREK-Vi 783 (820)
++..+--+..||+.|.=||| ++.+|.|+.+|+.|+-++-...+. .+-++|..|+..+++ +.
T Consensus 1126 ikK~ia~lnnlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~~kL~dAyl~-----eitKqIsaLe~e~PKnlt 1200 (1439)
T PF12252_consen 1126 IKKAIANLNNLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVIHTKLYDAYLV-----EITKQISALEKEKPKNLT 1200 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHHHhhhhhHHHHHH-----HHHHHHHHHHhhCCCchh
Confidence 33345567777887777773 356677777777776666555442 466788888863332 22
Q ss_pred hcccchhHHHHhhhhhHHH
Q 003431 784 SSIGEHDEVQLAFDQKDQI 802 (820)
Q Consensus 784 ANAAmQAKIQdSLDQKEAI 802 (820)
....|-..+-+++..-|.+
T Consensus 1201 dvK~missf~d~laeiE~L 1219 (1439)
T PF12252_consen 1201 DVKSMISSFNDRLAEIEFL 1219 (1439)
T ss_pred hHHHHHHHHHhhhhHHHHH
Confidence 3333444445555555543
No 180
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=76.92 E-value=79 Score=36.32 Aligned_cols=16 Identities=13% Similarity=0.381 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 003431 665 LREQIKAAQSKVDEKT 680 (820)
Q Consensus 665 LKAKIDeAQkEIqKLN 680 (820)
++..+.+++++|..|+
T Consensus 216 ~~~~leeae~~l~~L~ 231 (522)
T PF05701_consen 216 WEKELEEAEEELEELK 231 (522)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444333
No 181
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=76.53 E-value=83 Score=32.97 Aligned_cols=19 Identities=26% Similarity=0.604 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 003431 718 LKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 718 ldEKRKELdpLQEaL~KLR 736 (820)
...|+.+++..+..+..++
T Consensus 184 ~~~~~~~~~~~~~~l~~l~ 202 (301)
T PF14362_consen 184 YKEKRAQLDAAQAELDTLQ 202 (301)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444555555554444
No 182
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=76.47 E-value=54 Score=43.26 Aligned_cols=120 Identities=16% Similarity=0.335 Sum_probs=84.4
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---H-----HHHHHHHHH
Q 003431 659 RYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKS---K-----RQEIDSVQS 730 (820)
Q Consensus 659 RYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldE---K-----RKELdpLQE 730 (820)
|=+....-.+|.+++.+|++++..-.-+...+..++++.....+.++-|+.+...++..+.. + ..+++.|..
T Consensus 1235 Ree~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ 1314 (1822)
T KOG4674|consen 1235 REENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKS 1314 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 55566677788888888888888888888888888888888888888888888877754444 3 456777777
Q ss_pred HHHHhhcC-----CChHhHHHHHHhhhhhhhcCCCChHHHHHHH-HHHHHHHHH
Q 003431 731 RINMMKNA-----ISVDDIDGSIRNMEHRIAHETLPLKEEKQII-REIKQLKQR 778 (820)
Q Consensus 731 aL~KLRNA-----SSeEEIDarIKsLEyRIQHESLSLkEEKKLL-KEIKQLKkT 778 (820)
.+.+|..- .=.+|+..++..|...++--.=.|..+++.+ ++|++|+..
T Consensus 1315 ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~ 1368 (1822)
T KOG4674|consen 1315 EISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDL 1368 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777621 2345666666666655555555666676655 455555544
No 183
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.47 E-value=18 Score=39.03 Aligned_cols=66 Identities=9% Similarity=0.249 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 667 EQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 667 AKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL 732 (820)
.+|.+++++.......-..+...+.+...+++++..++..+.++++.++..+..-.+.|...++.|
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444455555555555555555554444444444444433
No 184
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=76.11 E-value=1.5e+02 Score=34.15 Aligned_cols=66 Identities=18% Similarity=0.363 Sum_probs=35.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCChHhHHHHHHhhhhhh
Q 003431 690 IQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKN-----AISVDDIDGSIRNMEHRI 755 (820)
Q Consensus 690 IKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRN-----ASSeEEIDarIKsLEyRI 755 (820)
+...+.++.+....|..+..+...++.....-+.||...+..|..+|+ ...+..|...+..+..++
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSEL 353 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence 444555555555555555566666666666666666666666666662 134444444444444443
No 185
>PRK00106 hypothetical protein; Provisional
Probab=75.99 E-value=1.1e+02 Score=36.06 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=12.9
Q ss_pred hHHHHHHhhhhhhhc-CCCChHHHHHHH
Q 003431 743 DIDGSIRNMEHRIAH-ETLPLKEEKQII 769 (820)
Q Consensus 743 EIDarIKsLEyRIQH-ESLSLkEEKKLL 769 (820)
+++..+.....+++. ..||..|=|.+|
T Consensus 147 ~~~~~~~~~~~~Le~~a~lt~~eak~~l 174 (535)
T PRK00106 147 QVEKLEEQKKAELERVAALSQAEAREII 174 (535)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 333334433333433 346666666555
No 186
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=75.50 E-value=38 Score=42.51 Aligned_cols=8 Identities=13% Similarity=0.206 Sum_probs=3.9
Q ss_pred eeEEeccC
Q 003431 652 YFLVKVPR 659 (820)
Q Consensus 652 YYfVRVPR 659 (820)
||++++..
T Consensus 164 p~~~~~~~ 171 (1195)
T KOG4643|consen 164 PYDIVVKK 171 (1195)
T ss_pred cchhhcch
Confidence 35555443
No 187
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.36 E-value=1e+02 Score=36.03 Aligned_cols=32 Identities=6% Similarity=0.264 Sum_probs=20.9
Q ss_pred chhHHHHhhhhhHHHHHHHHHHHHhhcccccc
Q 003431 788 EHDEVQLAFDQKDQIEEKMKVVLSSMFSSFLI 819 (820)
Q Consensus 788 mQAKIQdSLDQKEAIQdQVKlLkKEL~s~f~i 819 (820)
-++.|+.-+++.-++|-|...+-..|-.+|-+
T Consensus 401 q~~DI~Kil~etreLqkq~ns~se~L~Rsfav 432 (521)
T KOG1937|consen 401 QEQDIVKILEETRELQKQENSESEALNRSFAV 432 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34556666666667777777777777666643
No 188
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=75.21 E-value=45 Score=40.58 Aligned_cols=113 Identities=19% Similarity=0.331 Sum_probs=55.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCChHhHHHHHHhhhhhhhcCCCC
Q 003431 687 RDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKN-----AISVDDIDGSIRNMEHRIAHETLP 761 (820)
Q Consensus 687 ieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRN-----ASSeEEIDarIKsLEyRIQHESLS 761 (820)
..++...+.....+..++++.+..++.+...+.....|++.|+..+..|-. ...=+|+..+...||++++.-+-.
T Consensus 637 q~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~ 716 (769)
T PF05911_consen 637 QSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKE 716 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcc
Confidence 333333333333444444444444443333333333344444443333330 024456677788888888765421
Q ss_pred -----h-HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHH
Q 003431 762 -----L-KEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVL 810 (820)
Q Consensus 762 -----L-kEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLk 810 (820)
+ .+++++ ++-+ .+.+-+.+=|+=|++|- .+--|+|.|+
T Consensus 717 ~~~~~~~~~~~k~-------kqe~-EiaaAA~KLAECQeTI~---sLGkQLksLa 760 (769)
T PF05911_consen 717 ESLQQLANEDKKI-------KQEK-EIAAAAEKLAECQETIA---SLGKQLKSLA 760 (769)
T ss_pred cchhhcccccccc-------chHH-HHHHHHHHHHHHHHHHH---HHHHHHHhcC
Confidence 1 222222 2222 23334455566778888 7778888876
No 189
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=75.10 E-value=82 Score=37.20 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=20.7
Q ss_pred hcCCCChHHHHHHHH-----HHHHHHHHHHHHhh---cccchhHHHHhhh
Q 003431 756 AHETLPLKEEKQIIR-----EIKQLKQRREQISS---SIGEHDEVQLAFD 797 (820)
Q Consensus 756 QHESLSLkEEKKLLK-----EIKQLKkTREKViA---NAAmQAKIQdSLD 797 (820)
++..=+|.||=..++ ||.++...+..-.- -.--+.+++.+|.
T Consensus 203 ~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~ 252 (546)
T KOG0977|consen 203 QNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIR 252 (546)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHH
Confidence 333445666666664 55555544433331 1123455666665
No 190
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=74.92 E-value=45 Score=29.20 Aligned_cols=71 Identities=14% Similarity=0.324 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAE--KLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIe--QLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
++-.|+.++..|..+.+.=..+...|.....+++++.+ ...+...... |...+..-+++|..+.+.+.+++
T Consensus 12 l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk 84 (92)
T PF14712_consen 12 LEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLK 84 (92)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777777777777777777766655 2222333334 66677777777777777776665
No 191
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=74.85 E-value=1.3e+02 Score=34.97 Aligned_cols=48 Identities=19% Similarity=0.315 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHhhccc
Q 003431 768 IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSSMFSS 816 (820)
Q Consensus 768 LLKEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKEL~s~ 816 (820)
+-.+|++++..+....+.- .+..+.++=..-+.|+++++.|-..|+.+
T Consensus 250 i~~~i~~i~~~l~~~~~~L-~~l~l~~~~~~~~~i~~~Id~lYd~le~E 297 (560)
T PF06160_consen 250 IEEEIEQIEEQLEEALALL-KNLELDEVEEENEEIEERIDQLYDILEKE 297 (560)
T ss_pred HHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443332 12223333333335666666555555443
No 192
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=74.84 E-value=96 Score=41.17 Aligned_cols=28 Identities=7% Similarity=0.112 Sum_probs=19.3
Q ss_pred ChHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 003431 662 DENLREQIKAAQSKVDEKTRSRDAIRDD 689 (820)
Q Consensus 662 DEkLKAKIDeAQkEIqKLNQaR~aIieE 689 (820)
-....+.+.-++.+...|++++..|..+
T Consensus 1273 ~~~~~ael~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1273 LQEKVAELKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777655
No 193
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=74.57 E-value=1.5e+02 Score=34.45 Aligned_cols=51 Identities=8% Similarity=0.253 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 682 SRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 682 aR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL 732 (820)
.+.....++...+..+..+..++..+..+....|....+|+..+...++.|
T Consensus 61 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L 111 (475)
T PRK10361 61 ECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRL 111 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666666666666666666666666666666666666555
No 194
>PRK10869 recombination and repair protein; Provisional
Probab=74.55 E-value=86 Score=36.29 Aligned_cols=55 Identities=5% Similarity=0.128 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhh----cC-CChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHH
Q 003431 724 EIDSVQSRINMMK----NA-ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQR 778 (820)
Q Consensus 724 ELdpLQEaL~KLR----NA-SSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkT 778 (820)
+++.+++.|..++ ++ .|+++|=.....++.+++.-.=.-..-..+-+++++|++.
T Consensus 297 ~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~ 356 (553)
T PRK10869 297 RLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQ 356 (553)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 3455555554444 23 4788887777777777666555545555566666655554
No 195
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=74.46 E-value=1.2e+02 Score=35.02 Aligned_cols=10 Identities=40% Similarity=0.634 Sum_probs=5.3
Q ss_pred CChHHHHHHH
Q 003431 760 LPLKEEKQII 769 (820)
Q Consensus 760 LSLkEEKKLL 769 (820)
||..|=|..|
T Consensus 144 lt~~eak~~l 153 (514)
T TIGR03319 144 LTQEEAKEIL 153 (514)
T ss_pred CCHHHHHHHH
Confidence 5555555444
No 196
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=74.28 E-value=1.3e+02 Score=33.39 Aligned_cols=145 Identities=21% Similarity=0.288 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-------
Q 003431 663 ENLREQIKAAQSKVD----EKTRSRDAIRDDIQTIRASYKEYAEKLE-------AAISDERSARESLKSKRQE------- 724 (820)
Q Consensus 663 EkLKAKIDeAQkEIq----KLNQaR~aIieEIKAKRAERsELIeQLK-------ALRaE~RqlR~eldEKRKE------- 724 (820)
+-++.|.+.|++.|. .+++.-++....+..++++..-|.++|+ .|..+...||..+.....+
T Consensus 34 ei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~s 113 (305)
T PF14915_consen 34 EILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTS 113 (305)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 456677777777654 3444555566666666655555555543 3334444444333333222
Q ss_pred --------------HHHHHHH----HHHhh--c-----CCChHhHHHHHHhhhhhhhcCCCChHHHHHHHHH-----HHH
Q 003431 725 --------------IDSVQSR----INMMK--N-----AISVDDIDGSIRNMEHRIAHETLPLKEEKQIIRE-----IKQ 774 (820)
Q Consensus 725 --------------LdpLQEa----L~KLR--N-----ASSeEEIDarIKsLEyRIQHESLSLkEEKKLLKE-----IKQ 774 (820)
--.||.. +..|| | -.|..+ .++..|+..+.|..-+|.| |-|+-| ..|
T Consensus 114 krdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskae--sK~nsLe~elh~trdaLrE-KtL~lE~~QrdL~Q 190 (305)
T PF14915_consen 114 KRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAE--SKFNSLEIELHHTRDALRE-KTLALESVQRDLSQ 190 (305)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 2222221 12222 0 024444 4488999999998888875 555422 111
Q ss_pred HHHHHHHH-hhcccchhHHHHhhhhhHHHHHHHHHHH
Q 003431 775 LKQRREQI-SSSIGEHDEVQLAFDQKDQIEEKMKVVL 810 (820)
Q Consensus 775 LKkTREKV-iANAAmQAKIQdSLDQKEAIQdQVKlLk 810 (820)
-+.....+ -.|..-++++...++..+.+++++-.+.
T Consensus 191 tq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~Qlq 227 (305)
T PF14915_consen 191 TQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQ 227 (305)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 1133445556666666666666655443
No 197
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=74.25 E-value=65 Score=29.24 Aligned_cols=28 Identities=11% Similarity=0.205 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQT 692 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKA 692 (820)
+..++..++++++.+.+.|..+...+..
T Consensus 4 ~~~~~q~l~~~~~~l~~~~~~l~~~~~E 31 (105)
T cd00632 4 QLAQLQQLQQQLQAYIVQRQKVEAQLNE 31 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666555555555444433
No 198
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.24 E-value=43 Score=30.62 Aligned_cols=53 Identities=11% Similarity=0.268 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003431 663 ENLREQIKAAQS-------KVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSAR 715 (820)
Q Consensus 663 EkLKAKIDeAQk-------EIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR 715 (820)
++|.+||+.|-. +|++++.+...+..+.+..+..|..|..+-..|+++...++
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQ 66 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777776655 44444444444444444444444444444444443333333
No 199
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=74.03 E-value=29 Score=30.63 Aligned_cols=50 Identities=8% Similarity=0.217 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003431 686 IRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (820)
Q Consensus 686 IieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KL 735 (820)
++..-..+|.+-..|+.++.++..+...+....+..+..++.|...|..|
T Consensus 12 Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 12 LLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33444444555555566666666666666666666666666666555433
No 200
>PF15294 Leu_zip: Leucine zipper
Probab=74.01 E-value=41 Score=36.62 Aligned_cols=46 Identities=9% Similarity=0.117 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAIS 709 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRa 709 (820)
-+...|+.++.+-++++.+-..+-..--..-.++..+..+|+.|+.
T Consensus 129 ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 129 LLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666665555333222222222222344444444444444
No 201
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=73.94 E-value=33 Score=38.65 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=23.4
Q ss_pred ChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 003431 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTI 693 (820)
Q Consensus 662 DEkLKAKIDeAQkEIqKLNQaR~aIieEIKAK 693 (820)
-.+++++|.+++.++..+...+..+...++-+
T Consensus 73 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l 104 (525)
T TIGR02231 73 LAELRKQIRELEAELRDLEDRGDALKALAKFL 104 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688899999998888887776665555443
No 202
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=73.90 E-value=94 Score=31.68 Aligned_cols=35 Identities=11% Similarity=0.248 Sum_probs=19.1
Q ss_pred ChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHH
Q 003431 740 SVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLK 776 (820)
Q Consensus 740 SeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLK 776 (820)
+.+.|+.+|..+|.+.+-..+. ...-+-.++.+|.
T Consensus 167 ~fer~e~ki~~~ea~aea~~~~--~~~~l~~~l~~l~ 201 (219)
T TIGR02977 167 RFEQYERRVDELEAQAESYDLG--RKPSLEDEFAELE 201 (219)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc--CCCCHHHHHHHhc
Confidence 4566777777777776654321 1122444555554
No 203
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=73.74 E-value=1.7e+02 Score=33.47 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHh
Q 003431 664 NLREQIKAAQSKVDEKTRSRD-AIRDDIQTIRAS 696 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~-aIieEIKAKRAE 696 (820)
.++.+|+.|.++|.+++..-. .+...|+..+.+
T Consensus 255 ~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~e 288 (582)
T PF09731_consen 255 HAKERIDALQKELAELKEEEEEELERALEEQREE 288 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666655333 355555555554
No 204
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=73.65 E-value=55 Score=41.07 Aligned_cols=130 Identities=14% Similarity=0.148 Sum_probs=73.2
Q ss_pred CceeEEeccCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 650 PFYFLVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQ 729 (820)
Q Consensus 650 sFYYfVRVPRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQ 729 (820)
+-||=-.+-+++++-....+-.-.-. +++.+.-+-+.+++.|++...+..+++.+..+...++..+++..+++..+.
T Consensus 601 S~ygs~~v~~~~~~lk~~~f~~~~~~---l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~ 677 (1072)
T KOG0979|consen 601 SAYGSRQVITRNDPLKSRNFFSVSPV---LEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLK 677 (1072)
T ss_pred hccccceeeecCCcchhhhhhccchH---HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555567777555555433333 445555666777778888888888888888888877777777666666666
Q ss_pred HHHHHhhc-CCCh-----------HhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhh
Q 003431 730 SRINMMKN-AISV-----------DDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISS 784 (820)
Q Consensus 730 EaL~KLRN-ASSe-----------EEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViA 784 (820)
.....+.. ..+. .+|+ -...++..+-..+-+..++..++.+..+.....++..
T Consensus 678 ~er~~~~~~~~~~~~r~~~ie~~~~~l~--~qkee~~~~~~~~I~~~~~~~~~~~~~~~~~~~k~~e 742 (1072)
T KOG0979|consen 678 RERTKLNSELKSYQQRKERIENLVVDLD--RQEEEYAASEAKKILDTEDMRIQSIRWHLELTDKHKE 742 (1072)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 55544441 0011 1222 1223444444445555555555555444444444433
No 205
>PF13166 AAA_13: AAA domain
Probab=73.62 E-value=1.8e+02 Score=33.63 Aligned_cols=16 Identities=38% Similarity=0.765 Sum_probs=9.1
Q ss_pred eeCcccccccccccCCCcc
Q 003431 573 VNGGIKFTSEEQNDKTCPE 591 (820)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~ 591 (820)
|.-|+.|..+. .+||-
T Consensus 245 v~~G~~~~~~~---~~Cpf 260 (712)
T PF13166_consen 245 VEQGLELHKEG---DTCPF 260 (712)
T ss_pred HHcCccCCCCC---CcCCC
Confidence 44566666632 56763
No 206
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.33 E-value=15 Score=38.58 Aligned_cols=41 Identities=24% Similarity=0.420 Sum_probs=34.1
Q ss_pred hHHHHHHhhhhhhhcCCCChHHHHHHHHHH----------------HHHHHHHHHHhhcccchhHHH
Q 003431 743 DIDGSIRNMEHRIAHETLPLKEEKQIIREI----------------KQLKQRREQISSSIGEHDEVQ 793 (820)
Q Consensus 743 EIDarIKsLEyRIQHESLSLkEEKKLLKEI----------------KQLKkTREKViANAAmQAKIQ 793 (820)
+|++.+..||- +|||||.|| ++|=++|..+.+|..+||+||
T Consensus 27 eleRer~~le~----------qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqiq 83 (224)
T KOG3230|consen 27 ELERERQKLEL----------QEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQIQ 83 (224)
T ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666663 699999999 468889999999999999998
No 207
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=73.06 E-value=79 Score=29.29 Aligned_cols=15 Identities=0% Similarity=0.195 Sum_probs=10.4
Q ss_pred CChHhHHHHHHhhhh
Q 003431 739 ISVDDIDGSIRNMEH 753 (820)
Q Consensus 739 SSeEEIDarIKsLEy 753 (820)
-|.|||++.+..-.|
T Consensus 130 ~tdeei~~~~~~~~~ 144 (151)
T cd00179 130 ATDEELEDMLESGNS 144 (151)
T ss_pred CChHHHHHHHHcCCh
Confidence 488888877766443
No 208
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=73.00 E-value=34 Score=33.28 Aligned_cols=68 Identities=10% Similarity=0.345 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHHHHHhhhhhh
Q 003431 686 IRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRI 755 (820)
Q Consensus 686 IieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEIDarIKsLEyRI 755 (820)
|....+.+-.+++.+-.+|+...+-.++.+....+-+..+..++..++.+.. .+..|+.+|.+||+.+
T Consensus 59 l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~--~V~~Le~ki~~ie~~Q 126 (126)
T PF07889_consen 59 LSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQ--MVEGLEGKIDEIEEKQ 126 (126)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHHhcCC
Confidence 3333333444444444444444444444445455545555555555544442 4566778888888753
No 209
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=72.83 E-value=46 Score=40.75 Aligned_cols=62 Identities=16% Similarity=0.286 Sum_probs=37.2
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHhhcccc
Q 003431 752 EHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSSMFSSF 817 (820)
Q Consensus 752 EyRIQHESLSLkEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKEL~s~f 817 (820)
+|.|+++-|.++=| +.|.+.+.|+=..+.. .....-+.-++-||||-..|++.|-..|-++.
T Consensus 491 ~~d~e~~rik~ev~-eal~~~k~~q~kLe~s---ekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sm 552 (861)
T PF15254_consen 491 QFDIETTRIKIEVE-EALVNVKSLQFKLEAS---EKENQILGITLRQRDAEIERLRELTRTLQNSM 552 (861)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhhhHHHH---HhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555433 3444555554442222 22222345789999999999999988887664
No 210
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=72.71 E-value=1.3e+02 Score=35.77 Aligned_cols=69 Identities=25% Similarity=0.260 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL 732 (820)
+||..+.+++..+.+++.....+..++++.+--.++|..+|..+..+...++..+..|-.|+..|+..-
T Consensus 164 eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~ 232 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQR 232 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999988998888744
No 211
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=72.70 E-value=2.1e+02 Score=37.13 Aligned_cols=65 Identities=11% Similarity=0.221 Sum_probs=35.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 672 AQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 672 AQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
++.+|..++..-.+++..+...|.+-++...+-+.+-.+-+.+|...++-.+|++.|.+.++.+-
T Consensus 1420 ~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Fl 1484 (1758)
T KOG0994|consen 1420 ADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFL 1484 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334433333344444444445555555555555555566666666666666666666665554
No 212
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=72.53 E-value=57 Score=34.17 Aligned_cols=50 Identities=22% Similarity=0.389 Sum_probs=32.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 687 RDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 687 ieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
..+|-++|+.+++.+.+++....+...++..+..|--+++..+..|.+..
T Consensus 30 ~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~ 79 (202)
T PF06818_consen 30 DSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKK 79 (202)
T ss_pred HhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHh
Confidence 45566667777777777777777777777766666666666666554444
No 213
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=72.48 E-value=1.2e+02 Score=32.52 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHHH
Q 003431 762 LKEEKQIIREIKQL 775 (820)
Q Consensus 762 LkEEKKLLKEIKQL 775 (820)
+.....||++|+..
T Consensus 263 ~~~Q~~ll~~i~~~ 276 (342)
T cd08915 263 KKKQIELIKEIDAA 276 (342)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444445554433
No 214
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=72.46 E-value=82 Score=39.88 Aligned_cols=33 Identities=12% Similarity=0.089 Sum_probs=15.9
Q ss_pred HhhcccchhHHHHhhhhhHHHHHHHHHHHHhhc
Q 003431 782 ISSSIGEHDEVQLAFDQKDQIEEKMKVVLSSMF 814 (820)
Q Consensus 782 ViANAAmQAKIQdSLDQKEAIQdQVKlLkKEL~ 814 (820)
|..+..-++.+-..+..+.++...+|...+.|.
T Consensus 418 ver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~ 450 (1141)
T KOG0018|consen 418 VERLDKRRNKLAAKITSLSRSYEELKHDLDSLE 450 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHH
Confidence 344444444455555555555555554444443
No 215
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=72.34 E-value=1.2e+02 Score=38.07 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=40.1
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHH--------HHHHHHHHHHHHHHHH
Q 003431 660 YDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEY--------AEKLEAAISDERSARE 716 (820)
Q Consensus 660 YDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsEL--------IeQLKALRaE~RqlR~ 716 (820)
.|++--+++.+-||.++..++++-..+--.+.-+|++..+. .-+|+.|..|+..++.
T Consensus 318 ldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKd 382 (1243)
T KOG0971|consen 318 LDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKD 382 (1243)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHH
Confidence 35566677888899999988888888877777777666544 3356666666665553
No 216
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.11 E-value=61 Score=34.30 Aligned_cols=86 Identities=8% Similarity=0.227 Sum_probs=48.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhc-CCChHhHHHHH
Q 003431 672 AQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISD--ERSARESLKSKRQEIDSVQSRINMMKN-AISVDDIDGSI 748 (820)
Q Consensus 672 AQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE--~RqlR~eldEKRKELdpLQEaL~KLRN-ASSeEEIDarI 748 (820)
++..|..++++-.-|-.+|..+-+++..|+.||+..|.= ...+|...-.-+++.+-+-.....|++ ..+-+.-.-.+
T Consensus 17 L~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~ 96 (218)
T KOG1655|consen 17 LQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTA 96 (218)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 444555666666677788888888888888888755421 112222211222222333344444552 35666667677
Q ss_pred Hhhhhhhhc
Q 003431 749 RNMEHRIAH 757 (820)
Q Consensus 749 KsLEyRIQH 757 (820)
..|..-++|
T Consensus 97 e~LKdtq~T 105 (218)
T KOG1655|consen 97 ESLKDTQAT 105 (218)
T ss_pred HHHHHHHHH
Confidence 777766655
No 217
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=72.04 E-value=1.1e+02 Score=31.49 Aligned_cols=115 Identities=13% Similarity=0.296 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHhhcCCChHhHHHHHH
Q 003431 685 AIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSV---------------QSRINMMKNAISVDDIDGSIR 749 (820)
Q Consensus 685 aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpL---------------QEaL~KLRNASSeEEIDarIK 749 (820)
...++++.+|.+++.+..+.+++....+.....+-....+++.| +..|..+. .-.++=+.+|+
T Consensus 65 ~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~--~~l~~~~~ki~ 142 (194)
T PF15619_consen 65 RHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLE--QKLQEKEKKIQ 142 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 34566666666666666666666665555555444444444444 44444444 24566677788
Q ss_pred hhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHhh
Q 003431 750 NMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSSM 813 (820)
Q Consensus 750 sLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKEL 813 (820)
.|+++++-.+-++. +++....+ +....+..++....+-..++.++|...++|
T Consensus 143 ~Lek~leL~~k~~~------rql~~e~k------K~~~~~~~~~~l~~ei~~L~~klkEKer~L 194 (194)
T PF15619_consen 143 ELEKQLELENKSFR------RQLASEKK------KHKEAQEEVKSLQEEIQRLNQKLKEKEREL 194 (194)
T ss_pred HHHHHHHHHhhHHH------HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 88887776554433 22222111 111223334444444456666666655543
No 218
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=71.73 E-value=63 Score=28.51 Aligned_cols=58 Identities=19% Similarity=0.404 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 668 QIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 668 KIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL 732 (820)
+|.+|..+-++|...-.+....|+++|+...++-.++ ..++..+.....++..|+..+
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~-------~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQI-------KELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555444445555555544444444333 333445555555555555554
No 219
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=71.51 E-value=39 Score=39.82 Aligned_cols=55 Identities=15% Similarity=0.162 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHHHHH--H-HHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003431 662 DENLREQIKAAQSKV--D-EKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARE 716 (820)
Q Consensus 662 DEkLKAKIDeAQkEI--q-KLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~ 716 (820)
||..-++|-.+-.+. + .+..+..+....+.=+..++.++..+|+.+..+...||.
T Consensus 238 dP~~Aa~ilN~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~ 295 (726)
T PRK09841 238 DPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQ 295 (726)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666654432221 1 122222233334444556666666666666666666654
No 220
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=71.26 E-value=58 Score=39.31 Aligned_cols=10 Identities=20% Similarity=0.494 Sum_probs=4.6
Q ss_pred hHHHHHHhhh
Q 003431 743 DIDGSIRNME 752 (820)
Q Consensus 743 EIDarIKsLE 752 (820)
+++..|+.|.
T Consensus 585 ~~~~~i~~lk 594 (782)
T PRK00409 585 EADEIIKELR 594 (782)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 221
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=71.08 E-value=18 Score=32.38 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDA 685 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~a 685 (820)
+++...|+.++.-+..+...+..
T Consensus 8 ~ev~~sl~~l~~~~~~~~~~~~~ 30 (97)
T PF09177_consen 8 DEVQSSLDRLESLYRRWQRLRSD 30 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 56777777777766666554443
No 222
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=71.03 E-value=1.1e+02 Score=38.57 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=14.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH
Q 003431 761 PLKEEKQIIREIKQLKQRREQI 782 (820)
Q Consensus 761 SLkEEKKLLKEIKQLKkTREKV 782 (820)
.|++|-.++++...++..+...
T Consensus 512 ~l~~~e~ii~~~~~se~~l~~~ 533 (1041)
T KOG0243|consen 512 TLKEEEEIISQQEKSEEKLVDR 533 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3777777777777776665443
No 223
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=70.99 E-value=1e+02 Score=39.61 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISD 710 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE 710 (820)
++..+|..++.+|..+...+..+.+.+..++..+.+..+....++++
T Consensus 882 qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~ 928 (1294)
T KOG0962|consen 882 QLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNE 928 (1294)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444333333
No 224
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=70.90 E-value=1.2e+02 Score=33.75 Aligned_cols=100 Identities=16% Similarity=0.233 Sum_probs=47.6
Q ss_pred ccccccCCCCccccccCceeEEeccCCCChHHHHHHHHHHHHHHHH-----------hhhHHHHHHHHHHHHHhHHHHHH
Q 003431 634 VDASESRNIGVEVVKQPFYFLVKVPRYDDENLREQIKAAQSKVDEK-----------TRSRDAIRDDIQTIRASYKEYAE 702 (820)
Q Consensus 634 kDA~Dewp~~kqvpkhsFYYfVRVPRYDDEkLKAKIDeAQkEIqKL-----------NQaR~aIieEIKAKRAERsELIe 702 (820)
.-...+|.-..+-+-+.. =|.++ .|--.|+.-+++.++.-... ......|...+.++..+=+-+..
T Consensus 190 ~vd~~eWklEvERV~PqL--Kv~~~-~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~ 266 (359)
T PF10498_consen 190 KVDPAEWKLEVERVLPQL--KVTIR-ADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINN 266 (359)
T ss_pred cCCHHHHHHHHHHHhhhh--eeecc-CCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567877655333333 12222 33345666555555432222 22222233333333344444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 703 KLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 703 QLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
||..+.+++++.+..+.+.+++.+.+...+..+.
T Consensus 267 qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t 300 (359)
T PF10498_consen 267 QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERT 300 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 6666666666666666555555555555444443
No 225
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=70.86 E-value=1.8e+02 Score=37.43 Aligned_cols=45 Identities=9% Similarity=0.128 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003431 668 QIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDER 712 (820)
Q Consensus 668 KIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~R 712 (820)
++.++..++..+.+.+.....++.....++..+..++..+..++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~ 321 (1353)
T TIGR02680 277 QYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLE 321 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444333333333333
No 226
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=70.86 E-value=1.2e+02 Score=30.37 Aligned_cols=41 Identities=12% Similarity=0.255 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLE 705 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLK 705 (820)
|.-.|.+++..|.+.++.-..+....+.+..++.++...+.
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~ 68 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAE 68 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544444444444444444444444433
No 227
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.81 E-value=98 Score=36.19 Aligned_cols=110 Identities=17% Similarity=0.364 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDA----IRDDIQTIRASYKEY------AEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~a----IieEIKAKRAERsEL------IeQLKALRaE~RqlR~eldEKRKELdpLQEaL 732 (820)
.+|..++...++.+..+++.-.. +..+...+|..+..+ +.+++.+.+..++.-..+..+-..-..|.+.|
T Consensus 296 aKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~~~eel~~~Lrsel 375 (521)
T KOG1937|consen 296 AKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIESNEELAEKLRSEL 375 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34666666666666665554333 333333333222211 45666666666666666666666667788877
Q ss_pred HHhhcC-------CChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 003431 733 NMMKNA-------ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQI 782 (820)
Q Consensus 733 ~KLRNA-------SSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKV 782 (820)
.++-.. --.-||+..|+.++--|+ ||+.|..+|++...-+
T Consensus 376 e~lp~dv~rk~ytqrikEi~gniRKq~~DI~----------Kil~etreLqkq~ns~ 422 (521)
T KOG1937|consen 376 EKLPDDVQRKVYTQRIKEIDGNIRKQEQDIV----------KILEETRELQKQENSE 422 (521)
T ss_pred hcCCchhHHHHHHHHHHHHHhHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 776621 256788888888887665 5666666666554433
No 228
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=70.80 E-value=1.6e+02 Score=31.91 Aligned_cols=35 Identities=17% Similarity=0.418 Sum_probs=20.7
Q ss_pred ChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHH
Q 003431 740 SVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQ 777 (820)
Q Consensus 740 SeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKk 777 (820)
+.++|.++...+..+|+. ++.....||++|+....
T Consensus 241 ~~~eL~k~f~~~~~~i~~---~~~~Q~~ll~~i~~~n~ 275 (339)
T cd09235 241 SVEELDRVYGPLQKQVQE---SLSRQESLLANIQVAHQ 275 (339)
T ss_pred hHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 455555555555555554 56666777777765554
No 229
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=70.79 E-value=1e+02 Score=29.81 Aligned_cols=80 Identities=10% Similarity=0.297 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSA----------RESLKSKRQEIDSVQSRIN 733 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~Rql----------R~eldEKRKELdpLQEaL~ 733 (820)
.+.+.|..++.++..++ .++..+...|+.+.+++-.|..+...+ +..+.+.......+.+.++
T Consensus 20 ~L~s~lr~~E~E~~~l~-------~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellG 92 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQ-------EELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLG 92 (120)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555555555554444 444444444444444444444333333 3333333333333333333
Q ss_pred HhhcCCChHhHHHHHHhhh
Q 003431 734 MMKNAISVDDIDGSIRNME 752 (820)
Q Consensus 734 KLRNASSeEEIDarIKsLE 752 (820)
... =-++||..-|..|-
T Consensus 93 EK~--E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 93 EKS--EEVEELRADVQDLK 109 (120)
T ss_pred chH--HHHHHHHHHHHHHH
Confidence 332 24556665555553
No 230
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=70.76 E-value=82 Score=28.45 Aligned_cols=29 Identities=10% Similarity=0.268 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQT 692 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKA 692 (820)
.+.+++..++.+|+.+.+.+..+...+..
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e 31 (129)
T cd00890 3 ELAAQLQQLQQQLEALQQQLQKLEAQLTE 31 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777666665555444333
No 231
>PRK12705 hypothetical protein; Provisional
Probab=70.67 E-value=75 Score=37.00 Aligned_cols=28 Identities=4% Similarity=0.284 Sum_probs=13.5
Q ss_pred HhHHHHHHhhhhhhhc-CCCChHHHHHHH
Q 003431 742 DDIDGSIRNMEHRIAH-ETLPLKEEKQII 769 (820)
Q Consensus 742 EEIDarIKsLEyRIQH-ESLSLkEEKKLL 769 (820)
.+|+.++..+..+++. ..||-.|=|+.|
T Consensus 119 ~~~~~~~~~~~~~Le~ia~lt~~eak~~l 147 (508)
T PRK12705 119 LELEELEKQLDNELYRVAGLTPEQARKLL 147 (508)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3344444444444433 346666666554
No 232
>PRK01203 prefoldin subunit alpha; Provisional
Probab=70.40 E-value=45 Score=32.72 Aligned_cols=72 Identities=13% Similarity=0.245 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhH----H----------------------------------HHHHHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASY----K----------------------------------EYAEKLEA 706 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAER----s----------------------------------ELIeQLKA 706 (820)
++++|+.++++|+.++..+..+.+.+..++..- . ..-.+++-
T Consensus 12 ~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VEK~~e~kie~ 91 (130)
T PRK01203 12 IESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIAEERERTIER 91 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEEecHHHHHHH
Confidence 678888888888888888888888777776421 0 22567888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 707 AISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 707 LRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
|..+...+...+.+|.+.++.|+..++.|.
T Consensus 92 L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 92 LKENLEDLKDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999999999888887776
No 233
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=70.36 E-value=1.1e+02 Score=37.53 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHhhcc
Q 003431 799 KDQIEEKMKVVLSSMFS 815 (820)
Q Consensus 799 KEAIQdQVKlLkKEL~s 815 (820)
-+.++++|..++++...
T Consensus 599 ~~~lkeki~~~~~Ei~~ 615 (762)
T PLN03229 599 DDDLKEKVEKMKKEIEL 615 (762)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 35777777777776543
No 234
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.18 E-value=1.9e+02 Score=34.78 Aligned_cols=68 Identities=10% Similarity=0.177 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---C----CChHhHHH---------HHHhhhhhhhcCCCC
Q 003431 698 KEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKN---A----ISVDDIDG---------SIRNMEHRIAHETLP 761 (820)
Q Consensus 698 sELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRN---A----SSeEEIDa---------rIKsLEyRIQHESLS 761 (820)
.++.++.+.++.....+-..+++.+..-+.|-+.+++|+. + ++.+|.|. ..+.|..-|+|-.|+
T Consensus 605 ~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~ 684 (741)
T KOG4460|consen 605 SYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMK 684 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333333344433334444555555555556666666661 1 34444443 244455555555555
Q ss_pred hHHH
Q 003431 762 LKEE 765 (820)
Q Consensus 762 LkEE 765 (820)
.+.-
T Consensus 685 ~~KQ 688 (741)
T KOG4460|consen 685 KDKQ 688 (741)
T ss_pred HHHH
Confidence 5443
No 235
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=69.90 E-value=1.5 Score=51.10 Aligned_cols=32 Identities=16% Similarity=0.441 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS 696 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAE 696 (820)
++++++.++.++.++...|..+..++..+..+
T Consensus 244 l~~ql~~L~~el~~~e~~~~d~~~~~e~le~e 275 (713)
T PF05622_consen 244 LRAQLRRLREELERLEEQRDDLKIELEELEKE 275 (713)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666665555555444443333333
No 236
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=69.85 E-value=1.1e+02 Score=36.96 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 701 AEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 701 IeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
..+|+.+++++..|+.++..+++++..+...|..|.
T Consensus 159 l~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~ 194 (660)
T KOG4302|consen 159 LEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLC 194 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888888888888888888888888888887776
No 237
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=69.52 E-value=1.4e+02 Score=30.71 Aligned_cols=73 Identities=16% Similarity=0.267 Sum_probs=32.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhh-cC-CChHhHHHHHHhhhhhhhcCCCChHHHHHHHH
Q 003431 695 ASYKEYAEKLEAAISDERSARESLKSKRQE--IDSVQSRINMMK-NA-ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIR 770 (820)
Q Consensus 695 AERsELIeQLKALRaE~RqlR~eldEKRKE--LdpLQEaL~KLR-NA-SSeEEIDarIKsLEyRIQHESLSLkEEKKLLK 770 (820)
..+.++...++.+...++.-...+++++++ .+.++.-+.++. .+ .....|+.. +.-.-...|.+|+ +++.
T Consensus 78 ~~~K~l~~~i~~~~~~I~~~ik~~Ee~~k~~k~~~i~~~~~~~~~~~~v~~~~fe~~---~~~~wlnks~s~k---k~~e 151 (215)
T PF07083_consen 78 AKIKELIAPIDEASDKIDEQIKEFEEKEKEEKREKIKEYFEEMAEEYGVDPEPFERI---IKPKWLNKSYSLK---KIEE 151 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHhhh---cchHHhhcCCcHH---HHHH
Confidence 444455555555555555444445444433 224444444444 22 244455433 3333333445443 3555
Q ss_pred HHH
Q 003431 771 EIK 773 (820)
Q Consensus 771 EIK 773 (820)
+|.
T Consensus 152 ei~ 154 (215)
T PF07083_consen 152 EID 154 (215)
T ss_pred HHH
Confidence 554
No 238
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=69.37 E-value=1.2e+02 Score=34.18 Aligned_cols=107 Identities=11% Similarity=0.248 Sum_probs=46.2
Q ss_pred CChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 003431 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAIS 740 (820)
Q Consensus 661 DDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASS 740 (820)
+..++..+++.+...+.. .+...+...+.++..+..++.... -+..+..++.+++.|+..|...-. ..
T Consensus 256 ~~~el~qrLd~l~~RL~~------am~~~L~~~r~rL~~L~~RL~~~~-----P~~~L~~~~qrLd~L~~RL~~a~~-~~ 323 (432)
T TIGR00237 256 NQDELLQRLDGFNVRLHR------AFDTLLHQKKARLEQLVASLQRQH-----PQNKLALQQLQFEKLEKRKQAALN-KQ 323 (432)
T ss_pred cHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 445566677666665443 233334444444444444432111 112344445555555554433211 12
Q ss_pred hHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHh
Q 003431 741 VDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQIS 783 (820)
Q Consensus 741 eEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKVi 783 (820)
...-..++..|..++.+-| =.+++-+.-.+|+..+..+.
T Consensus 324 L~~k~~rL~~L~~rL~aLS----Pl~~~~~~~~~l~~~~~~l~ 362 (432)
T TIGR00237 324 LERTRQKKTRLTKRLTQTN----PSPQILRAQTRTEQLNRRLN 362 (432)
T ss_pred HHHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHH
Confidence 2333344455555554322 23344444444444444444
No 239
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=69.37 E-value=1.1e+02 Score=34.84 Aligned_cols=102 Identities=15% Similarity=0.213 Sum_probs=72.6
Q ss_pred HHHHHHHHHh---hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--c-C--CChH
Q 003431 671 AAQSKVDEKT---RSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK--N-A--ISVD 742 (820)
Q Consensus 671 eAQkEIqKLN---QaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR--N-A--SSeE 742 (820)
.++..|.++. +.-.+|.+-+++...+-.+|+.+-..|.+|+-..|..+...+.++..|-..+.+++ | | ...+
T Consensus 72 llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~ 151 (401)
T PF06785_consen 72 LLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLD 151 (401)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3444555444 33445667777777777788888888889998999988888888888888887777 2 2 5778
Q ss_pred hHHHHHHhhhhhhhcCCCChHHHHHHHHHH
Q 003431 743 DIDGSIRNMEHRIAHETLPLKEEKQIIREI 772 (820)
Q Consensus 743 EIDarIKsLEyRIQHESLSLkEEKKLLKEI 772 (820)
++-+.+.+.|.+-|+-.=-|.|+-+..++.
T Consensus 152 ~l~~e~~Ekeeesq~LnrELaE~layqq~L 181 (401)
T PF06785_consen 152 ALQQECGEKEEESQTLNRELAEALAYQQEL 181 (401)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877777666555666666665554
No 240
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=69.28 E-value=69 Score=33.68 Aligned_cols=76 Identities=12% Similarity=0.295 Sum_probs=54.1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----------HHHH---------HHHHHHHHHHHHHHHHHH
Q 003431 659 RYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS-----------YKEY---------AEKLEAAISDERSARESL 718 (820)
Q Consensus 659 RYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAE-----------RsEL---------IeQLKALRaE~RqlR~el 718 (820)
.|+.-.|+.+.+.++.+.+....+=..+...|.+...- +..| ..||+..+.++.++....
T Consensus 56 ~~~ggdLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~EWe~EL~~Y~~~sLR~~S~~kL~~tr~~Y~~L~~aM 135 (201)
T PF11172_consen 56 NFDGGDLEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFDEWEQELDQYSNASLRRASEQKLAETRRRYAQLIKAM 135 (201)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888899999999999888877777777777666522 2222 455666666666666667
Q ss_pred HHHHHHHHHHHHHHHH
Q 003431 719 KSKRQEIDSVQSRINM 734 (820)
Q Consensus 719 dEKRKELdpLQEaL~K 734 (820)
....+.|.|+...|+.
T Consensus 136 ~~Ae~km~PVL~~~~D 151 (201)
T PF11172_consen 136 RRAESKMQPVLAAFRD 151 (201)
T ss_pred HHHHHhcChHHHHHHH
Confidence 7777778888777754
No 241
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=69.20 E-value=49 Score=41.84 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=26.9
Q ss_pred cccccCCCCccccccCceeEEeccCCC-ChHHHHHHHHHHHHHHHHhhh
Q 003431 635 DASESRNIGVEVVKQPFYFLVKVPRYD-DENLREQIKAAQSKVDEKTRS 682 (820)
Q Consensus 635 DA~Dewp~~kqvpkhsFYYfVRVPRYD-DEkLKAKIDeAQkEIqKLNQa 682 (820)
-|+..+|..+|| ..| .++ -...|++++.+.+.|.++--.
T Consensus 991 kaLA~FP~d~qW--SaF-------Ns~EA~~AK~QMDaIKqmIekKv~L 1030 (1439)
T PF12252_consen 991 KALAAFPSDKQW--SAF-------NSEEARQAKAQMDAIKQMIEKKVVL 1030 (1439)
T ss_pred HHHHhCCCcccc--hhc-------CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788998888 555 333 445677888888888765433
No 242
>PRK11281 hypothetical protein; Provisional
Probab=68.97 E-value=63 Score=40.79 Aligned_cols=27 Identities=11% Similarity=0.238 Sum_probs=20.2
Q ss_pred CChHhHHHHHHhhhhhhhcCCCChHHH
Q 003431 739 ISVDDIDGSIRNMEHRIAHETLPLKEE 765 (820)
Q Consensus 739 SSeEEIDarIKsLEyRIQHESLSLkEE 765 (820)
.|..+|++++.+++..++...-.|.+.
T Consensus 121 ~Sl~qLEq~L~q~~~~Lq~~Q~~La~~ 147 (1113)
T PRK11281 121 LSLRQLESRLAQTLDQLQNAQNDLAEY 147 (1113)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889988888888777766666655
No 243
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=68.64 E-value=58 Score=35.20 Aligned_cols=52 Identities=21% Similarity=0.458 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 685 AIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 685 aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
.|...++..+.+...+..++..+......+...++.|+.|++..++.|..|.
T Consensus 166 ~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 166 ALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555566666666666666666666666666666666555555
No 244
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=68.61 E-value=83 Score=28.72 Aligned_cols=69 Identities=25% Similarity=0.394 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 664 NLREQIKAAQSKVDEK---TRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 664 kLKAKIDeAQkEIqKL---NQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL 732 (820)
.|.++|+.|+.-|... .+.+..+-.+++.+.+.|..|-.+|....++...+...-.+-...++...+.+
T Consensus 12 rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~I 83 (89)
T PF13747_consen 12 RLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETI 83 (89)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677666655532 23445566667777777777777777777776666665555555555444443
No 245
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=68.36 E-value=1.1e+02 Score=32.50 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=15.7
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhH
Q 003431 660 YDDENLREQIKAAQSKVDEKTRSR 683 (820)
Q Consensus 660 YDDEkLKAKIDeAQkEIqKLNQaR 683 (820)
.|+..++.++.+++.++.......
T Consensus 79 ld~~~~~~~l~~a~a~l~~a~a~l 102 (346)
T PRK10476 79 IDPRPYELTVAQAQADLALADAQI 102 (346)
T ss_pred ECcHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777877777766554433
No 246
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=68.31 E-value=85 Score=31.09 Aligned_cols=37 Identities=16% Similarity=0.353 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHH
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEY 700 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsEL 700 (820)
+-++.|..+..+|..++..|..+..++...|.++..|
T Consensus 49 n~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 49 NSKAEIETLEEELEELTSELNQLELELDTLRSEKENL 85 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555544444444444444444444444
No 247
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=68.30 E-value=80 Score=29.93 Aligned_cols=73 Identities=12% Similarity=0.245 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHH-H---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 664 NLREQIKAAQSKVDEKTRSRDA-I---RDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~a-I---ieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
+|..-|++++++|......+.. + ...+.....-...+..++..|..-.+.+|..+-+..+++..++.+|+++-
T Consensus 37 kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~ 113 (132)
T PF10392_consen 37 KLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLH 113 (132)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4566667777777666555544 2 33444455667777788888888888888888888888888888877766
No 248
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=68.16 E-value=20 Score=41.63 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=7.2
Q ss_pred HHhHHHHHHHHHHHHH
Q 003431 694 RASYKEYAEKLEAAIS 709 (820)
Q Consensus 694 RAERsELIeQLKALRa 709 (820)
+.+..+|..++++|+.
T Consensus 190 ~~~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKK 205 (555)
T ss_pred chhHHHHHHHHHHHHh
Confidence 4444444444444443
No 249
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=68.14 E-value=82 Score=27.47 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 003431 684 DAIRDDIQTIRASYKEYAEKL 704 (820)
Q Consensus 684 ~aIieEIKAKRAERsELIeQL 704 (820)
..+...+..+......+..+.
T Consensus 17 ~~~~~~~~~l~~~~~~l~~~~ 37 (127)
T smart00502 17 AELEDALKQLISIIQEVEENA 37 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 250
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=68.13 E-value=54 Score=28.93 Aligned_cols=37 Identities=3% Similarity=0.259 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003431 699 EYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (820)
Q Consensus 699 ELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KL 735 (820)
.+...++.||.+.+.....+..-.+.+..+...+..|
T Consensus 30 ~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 30 KLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESL 66 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433333
No 251
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=68.01 E-value=69 Score=37.27 Aligned_cols=99 Identities=11% Similarity=0.204 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHHHHHhhhhhhhcCCCChHHH
Q 003431 686 IRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEE 765 (820)
Q Consensus 686 IieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEIDarIKsLEyRIQHESLSLkEE 765 (820)
.+.+.++++.+.+.+.+..+.+.....+++..++.-.+|++.+++.=..|+. .-.-...+++.++.+. ++.
T Consensus 359 ~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~k--nq~vw~~kl~~~~e~~-------~~~ 429 (493)
T KOG0804|consen 359 LITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIK--NQDVWRGKLKELEERE-------KEA 429 (493)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHH-------HHH
Confidence 3333444444444555555555555555555555444444444433333331 1111112222222221 111
Q ss_pred HHHH-HHHHHHHHHHHHHhhcccchhHHH
Q 003431 766 KQII-REIKQLKQRREQISSSIGEHDEVQ 793 (820)
Q Consensus 766 KKLL-KEIKQLKkTREKViANAAmQAKIQ 793 (820)
.+-. .+|..|+.+-..+..|..-|-+++
T Consensus 430 ~~s~d~~I~dLqEQlrDlmf~le~qqklk 458 (493)
T KOG0804|consen 430 LGSKDEKITDLQEQLRDLMFFLEAQQKLK 458 (493)
T ss_pred HHHHHHHHHHHHHHHHhHheehhhhhhhh
Confidence 1111 346666666666666666665554
No 252
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=67.97 E-value=87 Score=28.81 Aligned_cols=24 Identities=8% Similarity=0.237 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHH
Q 003431 666 REQIKAAQSKVDEKTRSRDAIRDD 689 (820)
Q Consensus 666 KAKIDeAQkEIqKLNQaR~aIieE 689 (820)
-.+++.++++++.+.+.|..+-..
T Consensus 9 ~~~~q~~q~~~~~l~~q~~~le~~ 32 (110)
T TIGR02338 9 LAQLQQLQQQLQAVATQKQQVEAQ 32 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 253
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=67.69 E-value=67 Score=39.88 Aligned_cols=30 Identities=17% Similarity=-0.004 Sum_probs=22.2
Q ss_pred hcccchhHHHHhhhhhHHHHHHHHHHHHhh
Q 003431 784 SSIGEHDEVQLAFDQKDQIEEKMKVVLSSM 813 (820)
Q Consensus 784 ANAAmQAKIQdSLDQKEAIQdQVKlLkKEL 813 (820)
.||+.++++.++-+-|.-.+.|+|++.+.|
T Consensus 1060 efAa~eaemdeik~~~~edrakqkei~k~L 1089 (1424)
T KOG4572|consen 1060 EFAAIEAEMDEIKDGKCEDRAKQKEIDKIL 1089 (1424)
T ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 467777777777777777777887777655
No 254
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=67.66 E-value=1.8e+02 Score=32.15 Aligned_cols=66 Identities=12% Similarity=0.224 Sum_probs=43.2
Q ss_pred HHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhh-hhHHHHHHHHHHHHhhcccc
Q 003431 745 DGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFD-QKDQIEEKMKVVLSSMFSSF 817 (820)
Q Consensus 745 DarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLD-QKEAIQdQVKlLkKEL~s~f 817 (820)
.-+|++|+|-+ .+-|++.++.+.|++.|.++.+--..|.+-=+++. +-+++....+.+...|...|
T Consensus 90 ~lml~RL~~EL-------~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~~~~ 156 (355)
T PF09766_consen 90 QLMLARLEFEL-------EQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLGLPH 156 (355)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCc
Confidence 34588888874 67899999999999999998865443332223333 33355666666665554443
No 255
>PLN02320 seryl-tRNA synthetase
Probab=67.44 E-value=21 Score=41.26 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=11.7
Q ss_pred HhhhHHHHHHHHHHHHHhHHHHHHHH
Q 003431 679 KTRSRDAIRDDIQTIRASYKEYAEKL 704 (820)
Q Consensus 679 LNQaR~aIieEIKAKRAERsELIeQL 704 (820)
+-+.|.++..++..+|++|..+..++
T Consensus 98 ld~~~r~~~~~~~~lr~ern~~sk~i 123 (502)
T PLN02320 98 LYENMLALQKEVERLRAERNAVANKM 123 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 256
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=67.41 E-value=58 Score=41.06 Aligned_cols=10 Identities=50% Similarity=0.547 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 003431 770 REIKQLKQRR 779 (820)
Q Consensus 770 KEIKQLKkTR 779 (820)
..|++|+.++
T Consensus 409 ~r~k~l~~sv 418 (1141)
T KOG0018|consen 409 ARIKQLKESV 418 (1141)
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 257
>KOG2218 consensus ER to golgi transport protein/RAD50-interacting protein 1 [Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=67.39 E-value=29 Score=42.00 Aligned_cols=139 Identities=13% Similarity=0.158 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHH-----------HHHHhHHHHHHHHHHHHHH-HHHH------HHHHHHHHHHHHHHH
Q 003431 668 QIKAAQSKVDEKTRSRDAIRDDIQ-----------TIRASYKEYAEKLEAAISD-ERSA------RESLKSKRQEIDSVQ 729 (820)
Q Consensus 668 KIDeAQkEIqKLNQaR~aIieEIK-----------AKRAERsELIeQLKALRaE-~Rql------R~eldEKRKELdpLQ 729 (820)
.+++++++++.+++++..+..... ..+..+.+....++.|..- .+.+ .........++ +++
T Consensus 33 ~~s~l~~~~seL~q~l~~L~~~~~~n~~~~~s~~~~~q~~~~ev~~~le~L~~l~~~~~~~~~~~e~v~~~~~e~~-~~~ 111 (737)
T KOG2218|consen 33 LVSELEKELSELNQRLQNLKERDPSNLTTYLSAEQGAQQDIEEVGAELEKLQRLERALYGDLQLEEQVLKVAKEIL-QMR 111 (737)
T ss_pred chhhHHHHHHHHHHHHhhhcccCcccchhHhhHHHHhhhhHHHHhhhHHHHHHHHHHhhHHHHHHHHHhhccchhh-HHH
Confidence 467788888888886555432221 1112233343444444433 1111 12222223333 444
Q ss_pred HHHHHhh----cCCChHhHHHHHHhhhhhhh--------cCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhh
Q 003431 730 SRINMMK----NAISVDDIDGSIRNMEHRIA--------HETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFD 797 (820)
Q Consensus 730 EaL~KLR----NASSeEEIDarIKsLEyRIQ--------HESLSLkEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLD 797 (820)
+.+.++- ......+|+.....|+.-+- +..+++.|| |+.-+..+ |.+.....+++.++++
T Consensus 112 ~~V~~le~~k~yl~~~~~l~t~~~~l~nsi~~~~~k~~~~t~~s~~eE------~n~iee~~--v~~~h~i~~~l~~s~~ 183 (737)
T KOG2218|consen 112 DEVLKLEVFKQYLGTLLELDTLLFSLENSIFLSASKALFSTSFSLFEE------INNIEEIL--VARLHLIWRKLFRSFD 183 (737)
T ss_pred HHHHHHHHHHHHHHHHhccchhHhHHHHHhhcccchhhhhhHHhhhhh------cccchHHH--HHHhhHHHHHHHHHHH
Confidence 4333332 12345555555555554443 444688888 33334444 7788888889999988
Q ss_pred hhHHHHHHHHHHHHhhcccc
Q 003431 798 QKDQIEEKMKVVLSSMFSSF 817 (820)
Q Consensus 798 QKEAIQdQVKlLkKEL~s~f 817 (820)
.+... -+|.|++.+.+-|
T Consensus 184 ~r~~k--~~~~l~~~~~~~f 201 (737)
T KOG2218|consen 184 RRTVK--WHKLLRKQKSSDF 201 (737)
T ss_pred HHHHH--HHHHHHHHHHHHH
Confidence 76655 6778887776654
No 258
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=67.39 E-value=1.6e+02 Score=34.65 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHhh
Q 003431 721 KRQEIDSVQSRINMMK 736 (820)
Q Consensus 721 KRKELdpLQEaL~KLR 736 (820)
|-.|+..||.-.++|-
T Consensus 458 KeeeverLQ~lkgelE 473 (527)
T PF15066_consen 458 KEEEVERLQQLKGELE 473 (527)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 259
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=67.32 E-value=92 Score=34.55 Aligned_cols=10 Identities=30% Similarity=0.494 Sum_probs=5.4
Q ss_pred ChHHHHHHHH
Q 003431 761 PLKEEKQIIR 770 (820)
Q Consensus 761 SLkEEKKLLK 770 (820)
-|..||+.|+
T Consensus 189 ~l~~eKr~Lq 198 (310)
T PF09755_consen 189 KLEAEKRRLQ 198 (310)
T ss_pred HHHHHHHHHH
Confidence 4555555554
No 260
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=67.27 E-value=13 Score=37.02 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDI 690 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEI 690 (820)
+..++..++.++..+...|..+...+
T Consensus 72 le~~~~~l~~ELael~r~~~el~~~L 97 (194)
T PF08614_consen 72 LEQKLAKLQEELAELYRSKGELAQQL 97 (194)
T ss_dssp --------------------------
T ss_pred cccccccccccccccccccccccccc
Confidence 33444445555444444444443333
No 261
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=67.09 E-value=3.2e+02 Score=34.98 Aligned_cols=62 Identities=15% Similarity=0.384 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hc-----CCChHhHHHHHHhhhhhhhcCCCCh
Q 003431 701 AEKLEAAISDERSARESLKSKRQEIDSVQSRINMM----KN-----AISVDDIDGSIRNMEHRIAHETLPL 762 (820)
Q Consensus 701 IeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KL----RN-----ASSeEEIDarIKsLEyRIQHESLSL 762 (820)
.+.++.+..+...++..+.++..-++.-+..+..+ .. -+-..++.+.|+.+..|++-.+--+
T Consensus 740 ~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ 810 (1174)
T KOG0933|consen 740 LDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKEL 810 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555444444444433221 11 1466777777777777777766444
No 262
>PF13514 AAA_27: AAA domain
Probab=66.96 E-value=1.8e+02 Score=36.10 Aligned_cols=146 Identities=12% Similarity=0.275 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhcC
Q 003431 664 NLREQIKAAQSKVDEKTRSRDA---IRDDIQTIRASYKEYAEKLEAAISDERSARESLKS--KRQEIDSVQSRINMMKNA 738 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~a---IieEIKAKRAERsELIeQLKALRaE~RqlR~eldE--KRKELdpLQEaL~KLRNA 738 (820)
...+++++++++|......-.. +..++.....++..+..+++.++.+.+.+...+.- ...+++.|+..|..+-..
T Consensus 154 ~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~~l~~~ 233 (1111)
T PF13514_consen 154 QALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELAELGEV 233 (1111)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCc
Confidence 3444555555555544333322 23333344455555555555555555544432222 344444555544433200
Q ss_pred ----------------------CChHhHHHHHHhhhhhhhcCCCChHHH-HHHHHHHHHHHHHHHHHhhcccchhHHHHh
Q 003431 739 ----------------------ISVDDIDGSIRNMEHRIAHETLPLKEE-KQIIREIKQLKQRREQISSSIGEHDEVQLA 795 (820)
Q Consensus 739 ----------------------SSeEEIDarIKsLEyRIQHESLSLkEE-KKLLKEIKQLKkTREKViANAAmQAKIQdS 795 (820)
.-.+.+..++..|+.++. .|++.+. -..-.+|.+|...+..+........+.+..
T Consensus 234 ~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~--~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~dl~~~~~e 311 (1111)
T PF13514_consen 234 PDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELD--ALPVDEELLAHAAEIEALEEQRGEYRKARQDLPRLEAE 311 (1111)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333333333333322 3333333 112356667777766666555555555544
Q ss_pred hhhhHHHHHHHHHHHHhhc
Q 003431 796 FDQKDQIEEKMKVVLSSMF 814 (820)
Q Consensus 796 LDQKEAIQdQVKlLkKEL~ 814 (820)
+. ..+.++..+...|-
T Consensus 312 ~~---~~~~~~~~~~~~lg 327 (1111)
T PF13514_consen 312 LA---ELEAELRALLAQLG 327 (1111)
T ss_pred HH---HHHHHHHHHHHhcC
Confidence 44 44444444444443
No 263
>PTZ00464 SNF-7-like protein; Provisional
Probab=66.94 E-value=1.3e+02 Score=31.35 Aligned_cols=16 Identities=13% Similarity=0.331 Sum_probs=8.3
Q ss_pred CChHhHHHHHHhhhhh
Q 003431 739 ISVDDIDGSIRNMEHR 754 (820)
Q Consensus 739 SSeEEIDarIKsLEyR 754 (820)
.+++.||...-.++..
T Consensus 121 i~id~Vd~l~Dei~E~ 136 (211)
T PTZ00464 121 LNVDKVEDLQDELADL 136 (211)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 4566666554444433
No 264
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=66.84 E-value=1e+02 Score=28.20 Aligned_cols=90 Identities=18% Similarity=0.267 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 003431 667 EQIKAAQSKVDEKTRSRDAIRDDIQTIRA----SYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVD 742 (820)
Q Consensus 667 AKIDeAQkEIqKLNQaR~aIieEIKAKRA----ERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeE 742 (820)
++++.+..+|......-..+...-+.+.. ....+...+..|......+......+...++.....+..+..+ -
T Consensus 40 ~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~---~ 116 (213)
T cd00176 40 KKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDA---D 116 (213)
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 34455555555444444444444444443 3456777777888887777777777777666655544444421 1
Q ss_pred hHHHHHHhhhhhhhcCC
Q 003431 743 DIDGSIRNMEHRIAHET 759 (820)
Q Consensus 743 EIDarIKsLEyRIQHES 759 (820)
++..-|...+..+....
T Consensus 117 ~l~~wl~~~e~~l~~~~ 133 (213)
T cd00176 117 DLEQWLEEKEAALASED 133 (213)
T ss_pred HHHHHHHHHHHHhcCcc
Confidence 15555555555555443
No 265
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=66.56 E-value=1.3e+02 Score=36.27 Aligned_cols=66 Identities=12% Similarity=0.174 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH
Q 003431 671 AAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISD-----------------ERSARESLKSKRQEIDSVQSRIN 733 (820)
Q Consensus 671 eAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE-----------------~RqlR~eldEKRKELdpLQEaL~ 733 (820)
.+.++-.++...+..+..++...++.+.+...+++.+..+ .+.+.......+++++.||+.|.
T Consensus 172 ~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~ 251 (670)
T KOG0239|consen 172 LALKESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELE 251 (670)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444443333 33333333344445556666555
Q ss_pred Hhh
Q 003431 734 MMK 736 (820)
Q Consensus 734 KLR 736 (820)
.|+
T Consensus 252 ~l~ 254 (670)
T KOG0239|consen 252 ELK 254 (670)
T ss_pred HHH
Confidence 554
No 266
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=66.44 E-value=75 Score=35.35 Aligned_cols=68 Identities=15% Similarity=0.345 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHHHHHhhhhh
Q 003431 686 IRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHR 754 (820)
Q Consensus 686 IieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEIDarIKsLEyR 754 (820)
+..+-+.+....+.|..+++.+..-.+.+-..+...++.++.|...|+++....+. +-.+.|+.|+..
T Consensus 9 L~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~-e~~~~i~~L~~~ 76 (330)
T PF07851_consen 9 LQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSA-EERELIEKLEED 76 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCh-hHHHHHHHHHHH
Confidence 34444455666677778888888888888888888888899999988887643233 223345555544
No 267
>PRK11546 zraP zinc resistance protein; Provisional
Probab=66.14 E-value=21 Score=35.45 Aligned_cols=59 Identities=5% Similarity=0.191 Sum_probs=32.7
Q ss_pred HHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 678 EKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 678 KLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
.+...+.+...+...+|.++...+.+|++|-+...-=...+....+||..|+..|..+|
T Consensus 51 ~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 51 AWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELR 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555544433333456666777777777776665
No 268
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=66.08 E-value=2.4e+02 Score=35.75 Aligned_cols=117 Identities=14% Similarity=0.224 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--c------CCChHhHHHHHH
Q 003431 683 RDAIRDDIQTIRASYKEYAEKLEAA-----ISDERSARESLKSKRQEIDSVQSRINMMK--N------AISVDDIDGSIR 749 (820)
Q Consensus 683 R~aIieEIKAKRAERsELIeQLKAL-----RaE~RqlR~eldEKRKELdpLQEaL~KLR--N------ASSeEEIDarIK 749 (820)
|.+.-++..-++..+++.+..|+.| .+|.++++...+.-.+| |+..|.+.| + .....+.+++.+
T Consensus 1047 ~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kE---lk~~l~kkr~e~ik~~~~~kdK~e~er~~r 1123 (1189)
T KOG1265|consen 1047 REQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKE---LKKKLDKKRMEDIKVDKVIKDKAERERRKR 1123 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhccccccHHHHHHHHH
Confidence 3334444444445555666666533 23444444444444444 444444444 1 146666776666
Q ss_pred hhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHhhccc
Q 003431 750 NMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSSMFSS 816 (820)
Q Consensus 750 sLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKEL~s~ 816 (820)
+|..+-- |+.+++|++|+.+-.+=- ...+. .-+...++|.++-|.+.+++.++
T Consensus 1124 E~n~s~i---------~~~V~e~krL~~~~~k~~--e~L~k---~~~~~leql~e~~kal~~e~~~~ 1176 (1189)
T KOG1265|consen 1124 ELNSSNI---------KEFVEERKRLAEKQSKRQ--EQLVK---KHLEVLEQLAEEEKALDAEAEQE 1176 (1189)
T ss_pred HHHHHHH---------HHHHHHHHHHHHHHHHHH--HHHHH---HHHHHHHHHHHhhHHHHHHHHHH
Confidence 6655432 456777777765422211 00111 12233345555666666666544
No 269
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=66.04 E-value=98 Score=39.23 Aligned_cols=15 Identities=13% Similarity=0.468 Sum_probs=10.6
Q ss_pred CCChHHHHHHHHHHH
Q 003431 660 YDDENLREQIKAAQS 674 (820)
Q Consensus 660 YDDEkLKAKIDeAQk 674 (820)
|+...|+.+++++.+
T Consensus 23 p~~~~iq~~l~~~~~ 37 (1109)
T PRK10929 23 PDEKQITQELEQAKA 37 (1109)
T ss_pred CCHHHHHHHHHHhhc
Confidence 555668888877655
No 270
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.75 E-value=1.2e+02 Score=37.84 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=13.5
Q ss_pred CccchhHHhhhccccccCCCCCch
Q 003431 483 DDHRSKELEENMETEFTGEESDDL 506 (820)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~ 506 (820)
++|++.+|-+---+--||...++|
T Consensus 456 n~~~kEeLlrV~l~~~~gn~p~tl 479 (970)
T KOG0946|consen 456 NDQLKEELLRVPLAVDTGNDPDTL 479 (970)
T ss_pred hHHHHHHHHhhhhcccCCCCchHH
Confidence 466777766655555555444443
No 271
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=65.62 E-value=1.8e+02 Score=30.35 Aligned_cols=95 Identities=22% Similarity=0.379 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHHHHHhhhhhhhcCCCChHHHHH-HHHHHHHHHHHHHHHhhcc-cch
Q 003431 712 RSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQ-IIREIKQLKQRREQISSSI-GEH 789 (820)
Q Consensus 712 RqlR~eldEKRKELdpLQEaL~KLRNASSeEEIDarIKsLEyRIQHESLSLkEEKK-LLKEIKQLKkTREKViANA-AmQ 789 (820)
..++..+..-+..+.+|+..|..+++ ..+.|...|..|+.++. .+.+ .=..|..|+.-...+..-+ ...
T Consensus 212 ~~~~~E~~~~r~~~~~l~~el~~l~~--~~~~Le~~l~~le~~~~-------~~~~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 212 ESAKEELKELRRQIQSLQAELESLRA--KNASLERQLRELEQRLD-------EEREEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHhHHHHHHhhhhHhhhhhhcccc--chhhhhhhHHHHHHHHH-------HHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 33334444444444444444444442 34555666666665554 3333 3344555555544443222 222
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHhhcc
Q 003431 790 DEVQLAFDQKDQIEEKMKVVLSSMFS 815 (820)
Q Consensus 790 AKIQdSLDQKEAIQdQVKlLkKEL~s 815 (820)
.+.++-|+-|-++.-.|..-++=|+.
T Consensus 283 ~ey~~Ll~~K~~Ld~EIatYR~LLEg 308 (312)
T PF00038_consen 283 REYQELLDVKLALDAEIATYRKLLEG 308 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhC
Confidence 23456666666666666665555543
No 272
>PRK05658 RNA polymerase sigma factor RpoD; Validated
Probab=65.23 E-value=1.4e+02 Score=34.97 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=25.2
Q ss_pred HhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHH
Q 003431 742 DDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQL 775 (820)
Q Consensus 742 EEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQL 775 (820)
.+|....+.|....+..-|++.|+|++++.|++=
T Consensus 341 ~~I~~lq~~L~~ie~~~~Ls~eElk~l~~~i~~g 374 (619)
T PRK05658 341 DEIKKLQQELEAIEEETGLTIEELKEINRQISKG 374 (619)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcc
Confidence 3555555556666677789999999999988754
No 273
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=65.18 E-value=26 Score=40.01 Aligned_cols=72 Identities=14% Similarity=0.210 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRA--S--YKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRA--E--RsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
+.++...+..+++.++..|..+..+|..+.. + ...++++++.+..+++.+...+++..++|+.+...|-++-
T Consensus 34 ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~ipNi~ 109 (429)
T COG0172 34 LDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLLTIPNIP 109 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCC
Confidence 4445555666677777777777777753221 2 3567777777777777777777777777777666664443
No 274
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.15 E-value=80 Score=34.04 Aligned_cols=44 Identities=16% Similarity=0.298 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 680 TRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQ 723 (820)
Q Consensus 680 NQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRK 723 (820)
+..+..|..+++++++++.-+...+.-+..+...++..+.+|+.
T Consensus 85 ~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~ 128 (246)
T KOG4657|consen 85 EARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQ 128 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33344444455555554444444444445555555555555443
No 275
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=65.00 E-value=93 Score=28.74 Aligned_cols=67 Identities=9% Similarity=0.231 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003431 669 IKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (820)
Q Consensus 669 IDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KL 735 (820)
++.|...|+.....-.-+..++..+|.+...+......++..+..++....+-+.|-..-|+.|+.|
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666665555555566677777777777777766666666666666666666655555555443
No 276
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=64.85 E-value=1.4e+02 Score=32.50 Aligned_cols=22 Identities=9% Similarity=0.276 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 003431 715 RESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 715 R~eldEKRKELdpLQEaL~KLR 736 (820)
...+.+.++.+++++..|....
T Consensus 249 e~lF~~eL~kf~p~~~~l~~~~ 270 (356)
T cd09237 249 KQLFPEELEKFKPLQNRLEATI 270 (356)
T ss_pred HHHHHHHHHHcchHHHHHHHHH
Confidence 3455555555666666665444
No 277
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=64.75 E-value=1.4e+02 Score=28.93 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 686 IRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 686 IieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
+...|...|..+.+|+.+-+.|++....++....+.-+.+..||..+..++
T Consensus 21 Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~ 71 (107)
T PF09304_consen 21 LERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEAR 71 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666666666666666666666666666665
No 278
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=64.72 E-value=1.3e+02 Score=28.61 Aligned_cols=72 Identities=13% Similarity=0.341 Sum_probs=31.0
Q ss_pred ChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN 733 (820)
Q Consensus 662 DEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~ 733 (820)
.+.+..++..+..++..++.....+-.++..+.-+......+...+..+.+.+...+..-++|+..++..+.
T Consensus 54 ~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~ 125 (151)
T PF11559_consen 54 REDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQ 125 (151)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444444444444444444333
No 279
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.54 E-value=45 Score=30.49 Aligned_cols=55 Identities=9% Similarity=0.229 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 670 KAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQE 724 (820)
Q Consensus 670 DeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKE 724 (820)
+.+...|+.-...-.-+..++..+|.+...|......++..+..++..-.+-+.|
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433333333444555555555544444444444444444433333333
No 280
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=64.54 E-value=2.9e+02 Score=35.60 Aligned_cols=11 Identities=0% Similarity=0.205 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 003431 669 IKAAQSKVDEK 679 (820)
Q Consensus 669 IDeAQkEIqKL 679 (820)
|..+..-|..+
T Consensus 222 i~~l~e~~~~~ 232 (1353)
T TIGR02680 222 LTDVADALEQL 232 (1353)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 281
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=64.48 E-value=1.8e+02 Score=33.49 Aligned_cols=113 Identities=14% Similarity=0.272 Sum_probs=56.7
Q ss_pred CChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH
Q 003431 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIR-------ASYKEYAEKLEAAISDERS---------ARESLKSKRQE 724 (820)
Q Consensus 661 DDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKR-------AERsELIeQLKALRaE~Rq---------lR~eldEKRKE 724 (820)
+.+.++..|..+..+|.+++..=.. -+.+.. .....++.+.+.+..+... .+..+.....+
T Consensus 8 ~~edl~~~I~~L~~~i~~~k~eV~~---~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e 84 (593)
T PF06248_consen 8 SKEDLRKSISRLSRRIEELKEEVHS---MINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEE 84 (593)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 4567788888887777665443322 222222 3333444455444444421 12222223333
Q ss_pred HHHHHHHHHHhhc----CCChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhh
Q 003431 725 IDSVQSRINMMKN----AISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISS 784 (820)
Q Consensus 725 LdpLQEaL~KLRN----ASSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViA 784 (820)
+..|++.|..... .....+|+..+.+++.-+ .|++++.=+..|++.+..+..
T Consensus 85 ~~~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al--------~~~~~~~Aa~~L~~~~~~L~~ 140 (593)
T PF06248_consen 85 LQELKRELEENEQLLEVLEQLQEIDELLEEVEEAL--------KEGNYLDAADLLEELKSLLDD 140 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHHHHHh
Confidence 4444443332221 124556666665555433 456777777777777766654
No 282
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=64.39 E-value=1.3e+02 Score=28.35 Aligned_cols=31 Identities=19% Similarity=0.423 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTI 693 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAK 693 (820)
..+.+.++.++.+|+.+.+.+..+...+...
T Consensus 9 ~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~ 39 (140)
T PRK03947 9 EELAAQLQALQAQIEALQQQLEELQASINEL 39 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666555554443
No 283
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=63.87 E-value=1.1e+02 Score=27.79 Aligned_cols=55 Identities=9% Similarity=0.222 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLK 719 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eld 719 (820)
|++.++.+..++...+..+..+-.++...-++...++..+-.|.......+..++
T Consensus 9 ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YE 63 (79)
T PF08581_consen 9 IRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYE 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444444433
No 284
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=63.47 E-value=1.8e+02 Score=29.77 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIR 694 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKR 694 (820)
||.+|.++.+......+.-..|..+.+.++
T Consensus 32 LKeei~emkk~e~~~~k~m~ei~~eN~~L~ 61 (201)
T PF13851_consen 32 LKEEIAEMKKKEERNEKLMAEISQENKRLS 61 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555544444333333433333333
No 285
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=63.45 E-value=38 Score=38.74 Aligned_cols=63 Identities=11% Similarity=0.267 Sum_probs=39.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CChHhHHHHHHhhhhhhhc
Q 003431 695 ASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNA-ISVDDIDGSIRNMEHRIAH 757 (820)
Q Consensus 695 AERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNA-SSeEEIDarIKsLEyRIQH 757 (820)
.++.++.++|..+....+.|...++.-.+.++.++..|..+-+. ...+++..++..++.++..
T Consensus 301 ~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~ 364 (563)
T TIGR00634 301 ERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDK 364 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 44566666776666666666666666666667777777666632 3456666666666555443
No 286
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=63.44 E-value=29 Score=38.74 Aligned_cols=26 Identities=8% Similarity=0.341 Sum_probs=10.8
Q ss_pred HhhhHHHHHHHHHHHHHhHHHHHHHH
Q 003431 679 KTRSRDAIRDDIQTIRASYKEYAEKL 704 (820)
Q Consensus 679 LNQaR~aIieEIKAKRAERsELIeQL 704 (820)
+-+.|.++..++..+|++|..+..++
T Consensus 33 ld~~~r~l~~~~~~lr~~rn~~sk~i 58 (425)
T PRK05431 33 LDEERRELQTELEELQAERNALSKEI 58 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444333
No 287
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=63.32 E-value=79 Score=31.28 Aligned_cols=14 Identities=14% Similarity=0.351 Sum_probs=7.0
Q ss_pred hHHHHHHhhhhhhh
Q 003431 743 DIDGSIRNMEHRIA 756 (820)
Q Consensus 743 EIDarIKsLEyRIQ 756 (820)
.++.+|+.+.++|.
T Consensus 124 ~~~~ki~e~~~ki~ 137 (177)
T PF07798_consen 124 KQELKIQELNNKID 137 (177)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555555553
No 288
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=63.29 E-value=1.7e+02 Score=33.84 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=24.3
Q ss_pred CChHhHHHHHHhh----hhh------hhcCCCChHHHHHHHHHHHHHHHHHHHHh
Q 003431 739 ISVDDIDGSIRNM----EHR------IAHETLPLKEEKQIIREIKQLKQRREQIS 783 (820)
Q Consensus 739 SSeEEIDarIKsL----EyR------IQHESLSLkEEKKLLKEIKQLKkTREKVi 783 (820)
++++.+.++|+.| ++| |..---+|+++-..||-|+.+-.-+.+..
T Consensus 241 ~l~d~lk~~~q~~~~~~enr~~e~m~l~k~~nslkp~l~~lr~~~d~y~~~l~~~ 295 (464)
T KOG4637|consen 241 RLEDDLKALIQALRSNSENRLCELMELDKAMNSLKPDLIQLRKIRDQYLVWLMIK 295 (464)
T ss_pred hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHhc
Confidence 4666667767766 444 22223355566566666555554444443
No 289
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=63.24 E-value=64 Score=26.91 Aligned_cols=64 Identities=17% Similarity=0.146 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 664 NLREQIKAAQSKVDEKTRSRD-AIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~-aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL 732 (820)
+|+.+...|...+......-. .+..+...-...+..|++++++|..... .....++++.|++.=
T Consensus 2 ~Lw~~F~~a~~~~~~~~~~~~~~~~~~~~~n~~~K~~Li~~~~~l~~~~d-----~~~~~~~~k~l~~~W 66 (77)
T PF03993_consen 2 ELWKRFRAACDAFFDRRKEFFEEQDAEREENLEKKEALIEEAEALAESED-----WKEAAEEIKELQQEW 66 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----HHHHHHHHHHHHHHH
Confidence 567777777776543322221 2233333333566666777766664333 445555666666543
No 290
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=63.20 E-value=2.4e+02 Score=32.78 Aligned_cols=21 Identities=14% Similarity=0.496 Sum_probs=9.5
Q ss_pred ChHhHHHHHHhhhhhhhcCCC
Q 003431 740 SVDDIDGSIRNMEHRIAHETL 760 (820)
Q Consensus 740 SeEEIDarIKsLEyRIQHESL 760 (820)
....+...|..+..+|+..-|
T Consensus 415 ~l~~~~~~l~~ikR~lek~nL 435 (560)
T PF06160_consen 415 KLQKLKQKLREIKRRLEKSNL 435 (560)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 334444444444444444444
No 291
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=63.15 E-value=75 Score=35.10 Aligned_cols=56 Identities=9% Similarity=0.233 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 667 EQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 667 AKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
-||+++..++++|++. +...+-+|+.|.+-+..-+...++.+.+.-.|+-....|.
T Consensus 18 qKIqelE~QldkLkKE--------------~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~ 73 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKE--------------RQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLM 73 (307)
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHH
Confidence 4676666666655433 3444455666665555555555555555555555444444
No 292
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=63.13 E-value=2.5e+02 Score=34.34 Aligned_cols=88 Identities=19% Similarity=0.234 Sum_probs=36.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CChHhHHHHHHhhhhhhhcCCCCh-HHHHHHHHH
Q 003431 695 ASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNA--ISVDDIDGSIRNMEHRIAHETLPL-KEEKQIIRE 771 (820)
Q Consensus 695 AERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNA--SSeEEIDarIKsLEyRIQHESLSL-kEEKKLLKE 771 (820)
.....|..++...+++.++.+....+-+.++.--...++.+|+. ++.-++.....-.+.+.+.....| ++||++=++
T Consensus 119 ~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~ 198 (716)
T KOG4593|consen 119 GQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQ 198 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333333333333222333444421 333344433333333333333333 455555566
Q ss_pred HHHHHHHHHHH
Q 003431 772 IKQLKQRREQI 782 (820)
Q Consensus 772 IKQLKkTREKV 782 (820)
+++|+..-.++
T Consensus 199 ~~ql~~~~q~~ 209 (716)
T KOG4593|consen 199 HKQLQEENQKI 209 (716)
T ss_pred HHHHHHHHHHH
Confidence 66665543333
No 293
>PF14282 FlxA: FlxA-like protein
Probab=63.01 E-value=58 Score=30.20 Aligned_cols=58 Identities=7% Similarity=0.122 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRD----DIQTIRASYKEYAEKLEAAISDERSARESLKSKR 722 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIie----EIKAKRAERsELIeQLKALRaE~RqlR~eldEKR 722 (820)
....|..|+++|..|.+.-..|.. --..++..+..|..+|..|.+++.+++....++.
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555544 2245677888888888888888887776665543
No 294
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=62.96 E-value=70 Score=28.35 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSA 714 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~Rql 714 (820)
.|..||+.+-...+.++..=..+...+...+++|..|+++...++.+....
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666555555555566666666666666666665555544433
No 295
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=62.82 E-value=1.1e+02 Score=35.20 Aligned_cols=102 Identities=12% Similarity=0.158 Sum_probs=57.7
Q ss_pred EEeccCCCChHH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------------
Q 003431 654 LVKVPRYDDENL----REQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSAR-------------- 715 (820)
Q Consensus 654 fVRVPRYDDEkL----KAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR-------------- 715 (820)
-+++.-|+-+.- ++-+...+..|+.++.+- -...++-.+.+...-..+++.++..+..||
T Consensus 206 ~l~V~AF~PedA~~ia~aLL~~sE~~VN~Ls~ra--r~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~ 283 (434)
T PRK15178 206 RLNVKARSAKQAEFFAQRILSFAEQHVNTVSARM--QKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITA 283 (434)
T ss_pred EEEEEecCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHH
Confidence 467777774332 345566677788776542 223333344555555555666665555555
Q ss_pred --HHHHHHHHHHHHHHHHHHHhh-----cCCChHhHHHHHHhhhhhhhc
Q 003431 716 --ESLKSKRQEIDSVQSRINMMK-----NAISVDDIDGSIRNMEHRIAH 757 (820)
Q Consensus 716 --~eldEKRKELdpLQEaL~KLR-----NASSeEEIDarIKsLEyRIQH 757 (820)
..+..-..++-.++-.|..|+ +...+-.|..+|..|+.+|..
T Consensus 284 ~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~ 332 (434)
T PRK15178 284 IYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGE 332 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHH
Confidence 233334445555555555554 345677777777777777653
No 296
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=62.78 E-value=89 Score=30.48 Aligned_cols=33 Identities=9% Similarity=0.205 Sum_probs=21.6
Q ss_pred ChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 003431 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIR 694 (820)
Q Consensus 662 DEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKR 694 (820)
..+.-++.+.++.+++.+-..|.++-..++...
T Consensus 8 ~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~ 40 (119)
T COG1382 8 VQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIE 40 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777777777665555544
No 297
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=62.73 E-value=1.4e+02 Score=33.28 Aligned_cols=51 Identities=14% Similarity=0.380 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 686 IRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 686 IieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
|+..+..+..+.+....+|..++.+++++..-+.++.+++..+.+.|.+++
T Consensus 264 iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK 314 (359)
T PF10498_consen 264 INNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVK 314 (359)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555666666666666666666666666666666555554
No 298
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=62.50 E-value=2.5e+02 Score=32.93 Aligned_cols=27 Identities=4% Similarity=0.039 Sum_probs=14.0
Q ss_pred cccchhHHHHhhhhhHHHHHHHHHHHH
Q 003431 785 SIGEHDEVQLAFDQKDQIEEKMKVVLS 811 (820)
Q Consensus 785 NAAmQAKIQdSLDQKEAIQdQVKlLkK 811 (820)
|.-.|.++++.|+.+||+=.+.-.-.+
T Consensus 294 n~rlQrkL~~e~erRealcr~lsEses 320 (552)
T KOG2129|consen 294 NERLQRKLINELERREALCRMLSESES 320 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 334444555666666665555444333
No 299
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=62.43 E-value=1.3e+02 Score=27.71 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhH
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASY 697 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAER 697 (820)
.+.++++.++++++.+.+.+..+...+...+.-+
T Consensus 3 ql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~ 36 (126)
T TIGR00293 3 QLAAELQILQQQVESLQAQIAALRALIAELETAI 36 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777788888877777777766666655443
No 300
>PRK11281 hypothetical protein; Provisional
Probab=62.14 E-value=2.6e+02 Score=35.74 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHhh
Q 003431 799 KDQIEEKMKVVLSSM 813 (820)
Q Consensus 799 KEAIQdQVKlLkKEL 813 (820)
...+++|+..++.++
T Consensus 322 ~~~i~eqi~~l~~s~ 336 (1113)
T PRK11281 322 ERNIKEQISVLKGSL 336 (1113)
T ss_pred HHHHHHHHHHhcccH
Confidence 337788887777654
No 301
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=62.01 E-value=1.7e+02 Score=28.98 Aligned_cols=31 Identities=16% Similarity=0.355 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 696 SYKEYAEKLEAAISDERSARESLKSKRQEID 726 (820)
Q Consensus 696 ERsELIeQLKALRaE~RqlR~eldEKRKELd 726 (820)
.-.+|..++..|..+.......+..++.++.
T Consensus 52 d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~ 82 (155)
T PF06810_consen 52 DNEELKKQIEELQAKNKTAKEEYEAKLAQMK 82 (155)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777766666666666554
No 302
>PRK06285 chorismate mutase; Provisional
Probab=61.83 E-value=1.2e+02 Score=27.52 Aligned_cols=34 Identities=15% Similarity=0.388 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS 696 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAE 696 (820)
++++.+|+.++.+|-+|-..|..+..++...|..
T Consensus 10 ~elR~~ID~ID~~iv~Ll~~R~~l~~~I~~~K~~ 43 (96)
T PRK06285 10 NEIRKRIDEIDEQIIDLIAERTSLAKEIAELKKS 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688899999999999999999888888776654
No 303
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=61.64 E-value=81 Score=29.67 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=11.3
Q ss_pred ChHHHHHHHH-HHHHHHHHHHHHh
Q 003431 761 PLKEEKQIIR-EIKQLKQRREQIS 783 (820)
Q Consensus 761 SLkEEKKLLK-EIKQLKkTREKVi 783 (820)
++.|=..+|+ .|+.|++..+.+.
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~ 114 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLE 114 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445444443 4555555544443
No 304
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=61.39 E-value=57 Score=28.73 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003431 669 IKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSA 714 (820)
Q Consensus 669 IDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~Rql 714 (820)
+...+.+...+++.|+.....+..+..+..+|.+++.+|+.++..+
T Consensus 21 ~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 21 NSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444555555555555555555555555555555444433
No 305
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=61.29 E-value=1.8e+02 Score=30.89 Aligned_cols=67 Identities=10% Similarity=0.157 Sum_probs=41.8
Q ss_pred ChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIR-ASYKEYAEKLEAAISDERSARESLKSKRQEIDSV 728 (820)
Q Consensus 662 DEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKR-AERsELIeQLKALRaE~RqlR~eldEKRKELdpL 728 (820)
-|+++.-+..+-..|.++..-|.+-+..+.++= ..++.|....+..|.+.+.....++...+.++.|
T Consensus 63 ~~~l~~~L~~fae~la~vqDYRqa~v~RlE~KVv~pL~~Y~~~cK~~r~elK~~~~ar~kEikq~~~L 130 (219)
T PF06730_consen 63 NPNLKLGLKNFAECLAKVQDYRQAEVERLEAKVVEPLSQYGTICKHARDELKKFNKARNKEIKQLKQL 130 (219)
T ss_pred CccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666667777666776666665543 5566667777777777776666666555544443
No 306
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=61.19 E-value=12 Score=29.36 Aligned_cols=21 Identities=43% Similarity=0.757 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 003431 763 KEEKQIIREIKQLKQRREQIS 783 (820)
Q Consensus 763 kEEKKLLKEIKQLKkTREKVi 783 (820)
.+|.+++.|..+|++.|+++.
T Consensus 1 adEqkL~sekeqLrrr~eqLK 21 (32)
T PF02344_consen 1 ADEQKLISEKEQLRRRREQLK 21 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999986
No 307
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=61.15 E-value=68 Score=37.26 Aligned_cols=15 Identities=40% Similarity=0.711 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHH
Q 003431 765 EKQIIREIKQLKQRR 779 (820)
Q Consensus 765 EKKLLKEIKQLKkTR 779 (820)
..++.+|+.+|+..|
T Consensus 111 ~~~~~~~~~ql~~~~ 125 (472)
T TIGR03752 111 TQELTKEIEQLKSER 125 (472)
T ss_pred hHHHHHHHHHHHHHH
Confidence 345555666665553
No 308
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=61.06 E-value=90 Score=29.20 Aligned_cols=67 Identities=15% Similarity=0.359 Sum_probs=40.4
Q ss_pred ccCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 657 VPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQS 730 (820)
Q Consensus 657 VPRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQE 730 (820)
.+.|-||.+-+-+.-||--|+=+--.+..+...+..++.+...+..+.+ +++..+....++++.|++
T Consensus 49 ~~~~~dp~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~-------~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 49 CQHFVDPNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIE-------KLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 3457799998888888888887666666666555555544444444444 444444444444444443
No 309
>PLN02678 seryl-tRNA synthetase
Probab=61.04 E-value=53 Score=37.51 Aligned_cols=33 Identities=6% Similarity=0.208 Sum_probs=20.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 003431 674 SKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEA 706 (820)
Q Consensus 674 kEIqKLNQaR~aIieEIKAKRAERsELIeQLKA 706 (820)
.+|-++-+.|.++..++..+|++|..+..++..
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666677777777777766666643
No 310
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=60.92 E-value=1.9e+02 Score=29.67 Aligned_cols=31 Identities=10% Similarity=0.325 Sum_probs=14.6
Q ss_pred CChHhHHHHHHhhhhhhhcCCCChHHHHHHH
Q 003431 739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQII 769 (820)
Q Consensus 739 SSeEEIDarIKsLEyRIQHESLSLkEEKKLL 769 (820)
.|.++|+.+|....-.++.---.|.++-..|
T Consensus 78 ~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l 108 (240)
T PF12795_consen 78 LSLEELEQRLSQEQAQLQELQEQLQQENSQL 108 (240)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555544444444444444333
No 311
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=60.91 E-value=1e+02 Score=38.34 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=10.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHH
Q 003431 761 PLKEEKQIIREIKQLKQRREQ 781 (820)
Q Consensus 761 SLkEEKKLLKEIKQLKkTREK 781 (820)
-|+|++||-.+-.-|...|..
T Consensus 230 vl~ev~QLss~~q~ltp~rk~ 250 (1265)
T KOG0976|consen 230 VLKEVMQLSSQKQTLTPLRKT 250 (1265)
T ss_pred HHHHHHHHHHhHhhhhhHhhh
Confidence 455555555555555444443
No 312
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=60.84 E-value=1.6e+02 Score=37.50 Aligned_cols=12 Identities=17% Similarity=0.124 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHh
Q 003431 801 QIEEKMKVVLSS 812 (820)
Q Consensus 801 AIQdQVKlLkKE 812 (820)
.|++|+..++..
T Consensus 304 ~i~eQi~~l~~S 315 (1109)
T PRK10929 304 TLREQSQWLGVS 315 (1109)
T ss_pred HHHHHHHHhccC
Confidence 677777666544
No 313
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=60.84 E-value=2.5e+02 Score=30.57 Aligned_cols=24 Identities=29% Similarity=0.652 Sum_probs=11.7
Q ss_pred CChHHHHHHH-HHHHHHHHHHHHHh
Q 003431 760 LPLKEEKQII-REIKQLKQRREQIS 783 (820)
Q Consensus 760 LSLkEEKKLL-KEIKQLKkTREKVi 783 (820)
+.+.+|+... ++|..|+....++.
T Consensus 275 ~~m~eer~~~~~~~~~~~~k~~kLe 299 (309)
T PF09728_consen 275 IEMAEERQKLEKELEKLKKKIEKLE 299 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555443 44555555544443
No 314
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=60.71 E-value=2.5e+02 Score=34.38 Aligned_cols=135 Identities=17% Similarity=0.271 Sum_probs=77.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----C-------C
Q 003431 672 AQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKN-----A-------I 739 (820)
Q Consensus 672 AQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRN-----A-------S 739 (820)
+.+.+..+.+.++.+...+..+++.-+-+...+..|..+.+.+........+++..++..|...++ . .
T Consensus 494 ~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~ 573 (698)
T KOG0978|consen 494 ANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQI 573 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555556666667777777777777777777777776655551 0 2
Q ss_pred ChHhHHHHHHhhhhhhhcCCCChHHHHHHHHH----HHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHhh
Q 003431 740 SVDDIDGSIRNMEHRIAHETLPLKEEKQIIRE----IKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSSM 813 (820)
Q Consensus 740 SeEEIDarIKsLEyRIQHESLSLkEEKKLLKE----IKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKEL 813 (820)
-.+...+....++.+..-.++.|.-+++-.+. +..|++.-+.+.+... ..+- -+.++++++..|.-|
T Consensus 574 ~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~-----~~s~--d~~L~EElk~yK~~L 644 (698)
T KOG0978|consen 574 ELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES-----GASA--DEVLAEELKEYKELL 644 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----cccc--cHHHHHHHHHHHhce
Confidence 33445556666677777777888888777544 4444444333332211 0011 235667777766544
No 315
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=60.42 E-value=42 Score=40.11 Aligned_cols=55 Identities=11% Similarity=0.244 Sum_probs=42.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 676 VDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQS 730 (820)
Q Consensus 676 IqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQE 730 (820)
|.+++..|..+..++..+..+|++|.+.+..++.....++..+.+|+.|+..|+-
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~ 135 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKG 135 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 5566667777888888888888888888888888888888877777776666554
No 316
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=60.37 E-value=1.7e+02 Score=29.07 Aligned_cols=32 Identities=25% Similarity=0.261 Sum_probs=17.1
Q ss_pred hHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHH
Q 003431 743 DIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRRE 780 (820)
Q Consensus 743 EIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTRE 780 (820)
++....+.++-+|+--. .+|=.+|..|+..-+
T Consensus 117 ~~r~e~~~~~~ki~e~~------~ki~~ei~~lr~~iE 148 (177)
T PF07798_consen 117 RIREEQAKQELKIQELN------NKIDTEIANLRTEIE 148 (177)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 45556666666655433 344455555555433
No 317
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=60.22 E-value=2.6e+02 Score=30.43 Aligned_cols=17 Identities=29% Similarity=0.669 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003431 766 KQIIREIKQLKQRREQI 782 (820)
Q Consensus 766 KKLLKEIKQLKkTREKV 782 (820)
+.+|.++..|++.|.++
T Consensus 194 r~~l~~l~~lk~eR~~~ 210 (339)
T cd09235 194 RQLMEQVETIKAEREVI 210 (339)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66667777777777665
No 318
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=59.91 E-value=94 Score=30.33 Aligned_cols=18 Identities=0% Similarity=0.209 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 003431 665 LREQIKAAQSKVDEKTRS 682 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQa 682 (820)
+..+++.+..+.+.|.+.
T Consensus 25 v~~~l~~LEae~q~L~~k 42 (126)
T PF09403_consen 25 VESELNQLEAEYQQLEQK 42 (126)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555565555544443
No 319
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=59.86 E-value=4.1e+02 Score=32.74 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=17.3
Q ss_pred HHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHH
Q 003431 775 LKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVL 810 (820)
Q Consensus 775 LKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLk 810 (820)
|.+.|+.+.....+++-+..-..+++.+|.+++.+.
T Consensus 260 ~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~ 295 (716)
T KOG4593|consen 260 LSQLREELATLRENRETVGLLQEELEGLQSKLGRLE 295 (716)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444455556665555543
No 320
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=59.05 E-value=2.5e+02 Score=31.68 Aligned_cols=114 Identities=16% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHh
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDD 743 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEE 743 (820)
+|..+...+... |.+.-..|...+.++-++-+.|..||+.|++++|.+...+.+.+..-++++....+-- +.
T Consensus 238 nIe~~~~~~~~~---Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT-----~~ 309 (384)
T KOG0972|consen 238 NIEQKVGNVGPY---LDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRT-----ET 309 (384)
T ss_pred HHHHhhcchhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH-----HH
Q ss_pred HHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHhh
Q 003431 744 IDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSSM 813 (820)
Q Consensus 744 IDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKEL 813 (820)
|+ .++.||.++|+.-+.=.+-|..-|-++ .|..-|--|+.++
T Consensus 310 L~---------------------eVm~e~E~~KqemEe~G~~msDGaplv-------kIkqavsKLk~et 351 (384)
T KOG0972|consen 310 LD---------------------EVMDEIEQLKQEMEEQGAKMSDGAPLV-------KIKQAVSKLKEET 351 (384)
T ss_pred HH---------------------HHHHHHHHHHHHHHHhcccccCCchHH-------HHHHHHHHHHHHH
No 321
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=59.00 E-value=91 Score=34.97 Aligned_cols=64 Identities=11% Similarity=0.321 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhhcCCChHhHHHHHHhhhhhhhcCCC--ChHHHHHHHHHHHHHHHHHHHHhhcc
Q 003431 723 QEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETL--PLKEEKQIIREIKQLKQRREQISSSI 786 (820)
Q Consensus 723 KELdpLQEaL~KLRNASSeEEIDarIKsLEyRIQHESL--SLkEEKKLLKEIKQLKkTREKViANA 786 (820)
+.++.|...+..++.....+.+..++..|+.+|....+ .-+.=.++++|++.|+........+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~ 72 (364)
T TIGR00020 7 NRIEDLTSRLDTVRGSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEELK 72 (364)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666556777777777777777766654 33444455566655555544444443
No 322
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=58.60 E-value=2.9e+02 Score=30.61 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcC--CChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHH
Q 003431 701 AEKLEAAISDERSARESLKSKRQEIDSVQSRINMM---KNA--ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQL 775 (820)
Q Consensus 701 IeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KL---RNA--SSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQL 775 (820)
..+...|+..+.+.+.+.++-++-++.|-++=..| +.+ -|.+++..++...=.|+.-----|.|---+|..+.+|
T Consensus 90 y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRL 169 (333)
T KOG1853|consen 90 YQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRL 169 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33444444444444444444444444444322222 111 4666666553332222221111244444445555555
Q ss_pred HHH
Q 003431 776 KQR 778 (820)
Q Consensus 776 KkT 778 (820)
+--
T Consensus 170 kdE 172 (333)
T KOG1853|consen 170 KDE 172 (333)
T ss_pred HHH
Confidence 543
No 323
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=58.10 E-value=1.9e+02 Score=28.31 Aligned_cols=72 Identities=15% Similarity=0.264 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
++.....+...|++.|..=..+.......-.-+.-+.+++..+..+...++..+..+...+..++..|..++
T Consensus 47 Lkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k 118 (177)
T PF13870_consen 47 LKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVK 118 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444333333333333333344445555555555555555555555555555555555544
No 324
>PTZ00464 SNF-7-like protein; Provisional
Probab=57.94 E-value=2.4e+02 Score=29.47 Aligned_cols=23 Identities=9% Similarity=0.280 Sum_probs=10.0
Q ss_pred HHHHHHHHhhcccchhHHHHhhh
Q 003431 775 LKQRREQISSSIGEHDEVQLAFD 797 (820)
Q Consensus 775 LKkTREKViANAAmQAKIQdSLD 797 (820)
.+...+.+...+..+.+|+++|.
T Consensus 126 Vd~l~Dei~E~~e~~~EI~e~Ls 148 (211)
T PTZ00464 126 VEDLQDELADLYEDTQEIQEIMG 148 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333334444445555554
No 325
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=57.91 E-value=43 Score=33.32 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=33.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003431 674 SKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSA 714 (820)
Q Consensus 674 kEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~Rql 714 (820)
++|++|+..|....+.|+.|++.+.+|+.|..++++-.+.-
T Consensus 1 q~~~~Le~ek~~~~~rI~~K~~~LqEL~~Q~va~knLv~RN 41 (142)
T PF08781_consen 1 QECEELEEEKQRRRERIKKKKEQLQELILQQVAFKNLVQRN 41 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999999999999998888777544433
No 326
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=57.83 E-value=37 Score=33.28 Aligned_cols=78 Identities=15% Similarity=0.264 Sum_probs=44.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 659 RYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQ-------TIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSR 731 (820)
Q Consensus 659 RYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIK-------AKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEa 731 (820)
+||-++|.+-=...=.+++++...|.-....-. .+-+...+++..++....-.+.++..+..|-.|+..|+..
T Consensus 37 PyDpd~I~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~ 116 (131)
T PF04859_consen 37 PYDPDKIQAADEAVVSELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREK 116 (131)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467665554443444455555554444432211 1224455666666666666666777777777777777777
Q ss_pred HHHhh
Q 003431 732 INMMK 736 (820)
Q Consensus 732 L~KLR 736 (820)
|..+.
T Consensus 117 L~~~~ 121 (131)
T PF04859_consen 117 LDELN 121 (131)
T ss_pred HHHHH
Confidence 76554
No 327
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=57.81 E-value=3.7e+02 Score=31.47 Aligned_cols=59 Identities=8% Similarity=0.163 Sum_probs=32.8
Q ss_pred ChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKS 720 (820)
Q Consensus 662 DEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldE 720 (820)
.-++++++-.|+.++...-++-..+++.+..+|++-+.+.+++.....+++.++.+...
T Consensus 8 ~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~ 66 (459)
T KOG0288|consen 8 KSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQ 66 (459)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666655555566665555555555555555444444444443333
No 328
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=57.60 E-value=2.9e+02 Score=30.14 Aligned_cols=72 Identities=15% Similarity=0.249 Sum_probs=47.1
Q ss_pred CChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 661 DDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
+...+...+..+-.+++.++..|..+...++.++. .+.+..+|= .....+...+.+.++..++++..|..-.
T Consensus 189 ~~~~~v~~Lr~~l~~l~~lk~eR~~l~~~Lk~~~~-~DDI~~~ll---~~~~~~e~lF~~eL~kf~~~~~~v~~~~ 260 (339)
T cd09238 189 DDASIVGTLRSNLEELEALGNERAGIEDMMKALKR-NDNILAKVM---ATTGSYDALFKEELKKYDSVREAVSKNI 260 (339)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcHHHHH---HhhhhhHHHHHHHHHHHhhHHHHHHHHH
Confidence 34455677888888999999999998888866554 223322222 2222355567667777888888776655
No 329
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=57.48 E-value=1.3e+02 Score=33.05 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhcccchhHHHHhhhhhHHH
Q 003431 774 QLKQRREQISSSIGEHDEVQLAFDQKDQI 802 (820)
Q Consensus 774 QLKkTREKViANAAmQAKIQdSLDQKEAI 802 (820)
.|+..|...-.....++.+++.|.+++.+
T Consensus 141 elEr~K~~~d~L~~e~~~Lre~L~~rdel 169 (302)
T PF09738_consen 141 ELERQKRAHDSLREELDELREQLKQRDEL 169 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333443334444455555554443
No 330
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.27 E-value=1.8e+02 Score=31.91 Aligned_cols=71 Identities=13% Similarity=0.263 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChHhHHHHHHhhhhhhhcCCC--ChHHHHHHHHHHH
Q 003431 701 AEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK-NAISVDDIDGSIRNMEHRIAHETL--PLKEEKQIIREIK 773 (820)
Q Consensus 701 IeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR-NASSeEEIDarIKsLEyRIQHESL--SLkEEKKLLKEIK 773 (820)
..+|+.++.++.+.+..+.++-+ ..+|-.+.... ...+.++|+..|..-.+.+=+.-+ -..+.|+.|.||+
T Consensus 129 ~kkf~~~M~~f~~~~~~~r~~~k--~~i~Rql~i~~~~~~~de~ie~~ie~g~~~~f~~~~i~~~~~~~~~l~Eiq 202 (297)
T KOG0810|consen 129 SKKLKELMNEFNRTQSKYREEYK--ERIQRQLFIVGGEETTDEEIEEMIESGGSEVFTQKAIQDRGQAKQTLAEIQ 202 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhCCCcCChHHHHHHHHCCChHHHHHHHHHHhhhhHHHHHHHH
Confidence 34444555555544444444433 22222222222 247999999999887776655443 2456677776653
No 331
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=57.00 E-value=60 Score=37.97 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 003431 696 SYKEYAEKLEAAISDERSAR 715 (820)
Q Consensus 696 ERsELIeQLKALRaE~RqlR 715 (820)
+.+.+..++++.+++.+.++
T Consensus 220 e~d~lk~e~~~~~~~i~~~~ 239 (555)
T TIGR03545 220 EFDKLKKEGKADKQKIKSAK 239 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 332
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=56.91 E-value=1.5e+02 Score=32.22 Aligned_cols=62 Identities=8% Similarity=0.204 Sum_probs=34.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhc
Q 003431 676 VDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQS-RINMMKN 737 (820)
Q Consensus 676 IqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQE-aL~KLRN 737 (820)
+..+...-..+..+|+.+|.++.-...+|++|..=+=.|..+++.--.||+.|=+ =+.++||
T Consensus 185 l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRN 247 (267)
T PF10234_consen 185 LNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRN 247 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444556666666666666666666665555555566555555555433 3445553
No 333
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=56.85 E-value=1.2e+02 Score=37.38 Aligned_cols=73 Identities=12% Similarity=0.302 Sum_probs=51.5
Q ss_pred CChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhH-HHHHHHHHHHHhh
Q 003431 739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKD-QIEEKMKVVLSSM 813 (820)
Q Consensus 739 SSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKE-AIQdQVKlLkKEL 813 (820)
.+..+|+..+..||..++.+++ .+=.++|.|+.++=.+-..-..-..-+.+++++|++.. -+++|.+++..+.
T Consensus 535 ~~~~dL~~mmd~ie~la~~G~~--~~A~q~L~qlq~mmenmq~~~~q~~~~~~~~q~m~~L~dl~r~Qq~L~D~tf 608 (820)
T PF13779_consen 535 MSQQDLQRMMDRIEELARSGRM--DEARQLLEQLQQMMENMQNAQPQQQQQQEMQQAMEELGDLLRRQQQLMDETF 608 (820)
T ss_pred cCHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999987 45567888877765443322222244456777887655 6777777776553
No 334
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=56.82 E-value=61 Score=27.56 Aligned_cols=51 Identities=18% Similarity=0.311 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 682 SRDAIRDDIQTIRASYKEYAEKLEAA-----ISDERSARESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 682 aR~aIieEIKAKRAERsELIeQLKAL-----RaE~RqlR~eldEKRKELdpLQEaL 732 (820)
.|...+.++...-.+..+++.+|+.- .+....|...+..-+.+++.|+..|
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555555511 1333444445555555555555544
No 335
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=56.52 E-value=81 Score=34.34 Aligned_cols=83 Identities=13% Similarity=0.195 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHHHHHhhhhhhhcCCC
Q 003431 681 RSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETL 760 (820)
Q Consensus 681 QaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEIDarIKsLEyRIQHESL 760 (820)
+-|-+.......||++-.++-.+++.|..+.+.++.+-+.-|..-+.|-..-.+|+ +-.+++...+..|....+|-++
T Consensus 76 KNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~--~~le~~~~~l~~~~~~~~~~~~ 153 (292)
T KOG4005|consen 76 KNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELD--SELELLRQELAELKQQQQHNTR 153 (292)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH--HHHHHHHHHHHhhHHHHHHhhH
Confidence 44455555556677777777777777777777777666555555555555445555 2456666777777777777766
Q ss_pred ChHHH
Q 003431 761 PLKEE 765 (820)
Q Consensus 761 SLkEE 765 (820)
=..||
T Consensus 154 v~eee 158 (292)
T KOG4005|consen 154 VIEEE 158 (292)
T ss_pred HHhhh
Confidence 55554
No 336
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=56.15 E-value=1.2e+02 Score=25.82 Aligned_cols=66 Identities=11% Similarity=0.221 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASY---KEYAEKLEAAISDERSARESLKSKRQEIDSV 728 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAER---sELIeQLKALRaE~RqlR~eldEKRKELdpL 728 (820)
|.+..++++++..|..++..-..|...-...-... .++..++..|..+.+.+-..+..+++.|+.-
T Consensus 3 ~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 3 PEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666555444444433333332222 2466666666666665555555555554443
No 337
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=56.13 E-value=92 Score=34.27 Aligned_cols=67 Identities=12% Similarity=0.190 Sum_probs=44.0
Q ss_pred ChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 662 DEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL 732 (820)
++.|+--+..|+-|+. .|..+..++++++.++..++...+..+..+..+...+..-++-.+|||+.|
T Consensus 86 ~~~H~lml~RL~~EL~----~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l 152 (355)
T PF09766_consen 86 DDEHQLMLARLEFELE----QRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYL 152 (355)
T ss_pred CChHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 5567777777777644 355666666666666666666666666666666666666666666666655
No 338
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=56.07 E-value=91 Score=31.22 Aligned_cols=76 Identities=11% Similarity=0.324 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCChHhHHHHHHhhhhhhh
Q 003431 681 RSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK--NAISVDDIDGSIRNMEHRIA 756 (820)
Q Consensus 681 QaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR--NASSeEEIDarIKsLEyRIQ 756 (820)
+.+..+...+..++........+.+.+..+++.+|..+......++.....+..+- .-...+.|..+|..+.-.|+
T Consensus 103 ~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~ 180 (184)
T PF05791_consen 103 KDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIK 180 (184)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 44555556666666667777777777777777777777776666666555554444 22567777777777666554
No 339
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=55.59 E-value=2.8e+02 Score=30.15 Aligned_cols=27 Identities=11% Similarity=0.235 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 003431 667 EQIKAAQSKVDEKTRSRDAIRDDIQTI 693 (820)
Q Consensus 667 AKIDeAQkEIqKLNQaR~aIieEIKAK 693 (820)
..+..+-.+++.+++.|..+..+++.+
T Consensus 201 ~~L~~ll~~l~~lk~eR~~~~~~Lk~k 227 (356)
T cd09237 201 KQLEELLEDLNLIKEERQRVLKDLKQK 227 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556777777777777777543
No 340
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=55.54 E-value=84 Score=34.74 Aligned_cols=72 Identities=10% Similarity=0.274 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
-..+|..+..+|..++..=....++|-.+.+++-.+..+++.+..+...++..+..-+.-=..|+..|..|+
T Consensus 211 An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elq 282 (306)
T PF04849_consen 211 ANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQ 282 (306)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777666666677777777777777777777777766666666555444445555555555
No 341
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=55.50 E-value=1.1e+02 Score=34.32 Aligned_cols=58 Identities=10% Similarity=0.390 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhhcCCChHhHHHHHHhhhhhhhcCCC--ChHHHHHHHHHHHHHHHHHH
Q 003431 723 QEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETL--PLKEEKQIIREIKQLKQRRE 780 (820)
Q Consensus 723 KELdpLQEaL~KLRNASSeEEIDarIKsLEyRIQHESL--SLkEEKKLLKEIKQLKkTRE 780 (820)
+.++.|.+.+..|......+.+..++..|+..|....+ ..+.=+++++|.+.|+..-.
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~ 66 (367)
T PRK00578 7 ERLKDLDEKLENIRGVLDVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLD 66 (367)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666556677777777777776665554 33333345555555544433
No 342
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=55.41 E-value=3.9 Score=47.71 Aligned_cols=40 Identities=3% Similarity=0.267 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHH
Q 003431 659 RYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYK 698 (820)
Q Consensus 659 RYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERs 698 (820)
.-+.+.+..+..+++.+|..+...|..+..+...++.++.
T Consensus 185 ~~e~d~l~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~ 224 (713)
T PF05622_consen 185 VAERDELAQRCHELEKQISDLQEEKESLQSENEELQERLS 224 (713)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhcccC
Confidence 3445667777777777777777777777666655554433
No 343
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=55.21 E-value=1e+02 Score=36.33 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 003431 696 SYKEYAEKLEAAISDERSARESLKS----KRQEIDSVQSRI 732 (820)
Q Consensus 696 ERsELIeQLKALRaE~RqlR~eldE----KRKELdpLQEaL 732 (820)
+-+++++.|...-+..+++|..+.. .++-...||++|
T Consensus 539 rerelreslekql~~ErklR~~~qkr~kkEkk~k~k~qe~L 579 (641)
T KOG3915|consen 539 RERELRESLEKQLAMERKLRAIVQKRLKKEKKAKRKLQEAL 579 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444445555543333 222334555555
No 344
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=55.12 E-value=80 Score=34.95 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=69.9
Q ss_pred ChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh----------HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 003431 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS----------YKEYAEKLEAAIS---DERSARESLKSKRQEIDSV 728 (820)
Q Consensus 662 DEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAE----------RsELIeQLKALRa---E~RqlR~eldEKRKELdpL 728 (820)
-++++++|++++.+|-+|-.+|..+..++-+.|.+ -.++.+++..... ....++..+..-.+..+.+
T Consensus 6 L~~lR~~ID~ID~eIl~LL~~R~~~~~~I~~~K~~~g~pi~dp~RE~~vl~~~~~~~~g~l~~~~i~~If~~I~~~Sr~~ 85 (360)
T PRK12595 6 LEQLRKEIDEINLQLLELLSKRGELVQEIGEEKTKQGTKRYDPVREREMLDMIAENNEGPFEDSTIQHLFKEIFKASLEL 85 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999887743 3344444443221 1234566777777777777
Q ss_pred HHHHHHhh-----cC---CChHhHHH-HHH--hhhhhhhcCCCChHHHHHHHHHHHHHHH
Q 003431 729 QSRINMMK-----NA---ISVDDIDG-SIR--NMEHRIAHETLPLKEEKQIIREIKQLKQ 777 (820)
Q Consensus 729 QEaL~KLR-----NA---SSeEEIDa-rIK--sLEyRIQHESLSLkEEKKLLKEIKQLKk 777 (820)
|...++.+ .+ .|.-.+.. .|- ..-+ |. +.=+++.++++++-.++|+.
T Consensus 86 Q~~~~~k~~~~s~~~~~~~~~~~~~~~~~g~~~~~~-ia-Gpc~iE~~~~~~~~A~~lk~ 143 (360)
T PRK12595 86 QEDDNRKALLVSRKKKPEDTIVDVKGEVIGDGNQSF-IF-GPCSVESYEQVEAVAKALKA 143 (360)
T ss_pred HHHhhhhhHHhhCccCCCCCEEEECCEEecCCCeee-EE-ecccccCHHHHHHHHHHHHH
Confidence 77665544 11 12211110 000 0000 11 22266789999999999875
No 345
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=54.97 E-value=1.4e+02 Score=26.11 Aligned_cols=14 Identities=36% Similarity=0.515 Sum_probs=5.4
Q ss_pred ChHHHHHHHHHHHH
Q 003431 662 DENLREQIKAAQSK 675 (820)
Q Consensus 662 DEkLKAKIDeAQkE 675 (820)
-+++..+|..+...
T Consensus 28 s~~lR~~i~~~~~~ 41 (102)
T PF14523_consen 28 SQELREKIHQLIQK 41 (102)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 34444444433333
No 346
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=54.95 E-value=63 Score=34.23 Aligned_cols=29 Identities=21% Similarity=0.438 Sum_probs=16.1
Q ss_pred CCCChHHHHHHH-HHHHHHHHHhhhHHHHH
Q 003431 659 RYDDENLREQIK-AAQSKVDEKTRSRDAIR 687 (820)
Q Consensus 659 RYDDEkLKAKID-eAQkEIqKLNQaR~aIi 687 (820)
.-....-+.|+. .|.++|.+|..-|.+|-
T Consensus 33 ~~~n~~QKEK~E~DLKkEIKKLQR~RdQIK 62 (233)
T PF04065_consen 33 SATNQNQKEKLEADLKKEIKKLQRLRDQIK 62 (233)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444442 46667777777777763
No 347
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.86 E-value=1e+02 Score=33.76 Aligned_cols=19 Identities=16% Similarity=0.405 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 003431 664 NLREQIKAAQSKVDEKTRS 682 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQa 682 (820)
.++.-|+.+...+.++.+.
T Consensus 44 ~Ir~~i~~l~~~~~~l~~~ 62 (297)
T KOG0810|consen 44 EIRDDIEKLDEDVEKLQKL 62 (297)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4555555555554444333
No 348
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=54.84 E-value=2.2e+02 Score=32.44 Aligned_cols=94 Identities=17% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHHHHHhhhhhhhcCC
Q 003431 684 DAIRDDIQTIRASYKEYAEKLEAAIS----DERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHET 759 (820)
Q Consensus 684 ~aIieEIKAKRAERsELIeQLKALRa----E~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEIDarIKsLEyRIQHES 759 (820)
..|.++++++|.....|...++.|+. +..-+...+.+.|-..+.|-+.++.+. |+.
T Consensus 215 ~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~------elH-------------- 274 (395)
T PF10267_consen 215 QKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLT------ELH-------------- 274 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH------HHH--------------
Q ss_pred CChHHHHHHHHHHHHHHHHH----HHHhhcccchhH-HHHhhhhhHHHHHHHHHH
Q 003431 760 LPLKEEKQIIREIKQLKQRR----EQISSSIGEHDE-VQLAFDQKDQIEEKMKVV 809 (820)
Q Consensus 760 LSLkEEKKLLKEIKQLKkTR----EKViANAAmQAK-IQdSLDQKEAIQdQVKlL 809 (820)
..||..||+.- +++-.-+..|++ ||+.|+ .+|.+|--|
T Consensus 275 ---------q~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~E---s~qtRiskl 317 (395)
T PF10267_consen 275 ---------QNEIYNLKQELASMEEKMAYQSYERARDIWEVME---SCQTRISKL 317 (395)
T ss_pred ---------HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHH
No 349
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=54.83 E-value=4 Score=47.59 Aligned_cols=77 Identities=12% Similarity=0.224 Sum_probs=0.0
Q ss_pred EEeccCCCChHHHHHHHHHHHHHHHHhhhHHHHH----HHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 654 LVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIR----DDIQ-------TIRASYKEYAEKLEAAISDERSARESLKSKR 722 (820)
Q Consensus 654 fVRVPRYDDEkLKAKIDeAQkEIqKLNQaR~aIi----eEIK-------AKRAERsELIeQLKALRaE~RqlR~eldEKR 722 (820)
+...++.+...++.+|..++.+|..++..+.... .++. ....+..++..+++.+..+...++..+.+..
T Consensus 55 ~~~~~~~e~~~~k~~l~~Le~e~~~~~~e~~~~~~~le~~~~~l~~~~~~~~~~~~ele~~~~~l~~~~~~le~el~~~~ 134 (722)
T PF05557_consen 55 QSSEERAELIELKAQLNQLEYELEQLKQEHERAQLELEKELRELQRQLEREFKRNQELEARLKQLEEREEELEEELEEAE 134 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666666666665544433211 1111 1112333444444455555545555555544
Q ss_pred HHHHHHHH
Q 003431 723 QEIDSVQS 730 (820)
Q Consensus 723 KELdpLQE 730 (820)
++...++.
T Consensus 135 e~~~~~k~ 142 (722)
T PF05557_consen 135 EELEQLKR 142 (722)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 44444443
No 350
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=54.82 E-value=2.8e+02 Score=34.18 Aligned_cols=14 Identities=14% Similarity=0.508 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHH
Q 003431 769 IREIKQLKQRREQI 782 (820)
Q Consensus 769 LKEIKQLKkTREKV 782 (820)
++.|..|++--..+
T Consensus 189 vkkiakLEaEC~rL 202 (769)
T PF05911_consen 189 VKKIAKLEAECQRL 202 (769)
T ss_pred HHHHHHHHHHHHHH
Confidence 46666666544433
No 351
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=54.70 E-value=24 Score=40.81 Aligned_cols=53 Identities=11% Similarity=0.217 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003431 666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESL 718 (820)
Q Consensus 666 KAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~el 718 (820)
+.++.+.+....++.+.-.++..+++.+...+.++.++|+.|.+++++|+..+
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33343333333333333223333333333444444444444444444444333
No 352
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=54.41 E-value=2.9e+02 Score=30.76 Aligned_cols=103 Identities=16% Similarity=0.298 Sum_probs=61.9
Q ss_pred hHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHhh----
Q 003431 682 SRDA-IRDDIQTIRASYKEYAEKLEAAISDER--------------------SARESLKSKRQEIDSVQSRINMMK---- 736 (820)
Q Consensus 682 aR~a-IieEIKAKRAERsELIeQLKALRaE~R--------------------qlR~eldEKRKELdpLQEaL~KLR---- 736 (820)
+|.. ++..+..+..+..+|..++.-|+++.+ .++..++++++.++.+|..|.-.+
T Consensus 129 RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPd 208 (330)
T KOG2991|consen 129 RRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPD 208 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCC
Confidence 3444 355555556666666666665555443 334577778888888888662211
Q ss_pred ---------cC-------------------------------------CChHhHHHHHHhhhh---hhhcCCCChHHHHH
Q 003431 737 ---------NA-------------------------------------ISVDDIDGSIRNMEH---RIAHETLPLKEEKQ 767 (820)
Q Consensus 737 ---------NA-------------------------------------SSeEEIDarIKsLEy---RIQHESLSLkEEKK 767 (820)
+| +|-++|+..|..|-. +|+.+-|-|.++-+
T Consensus 209 S~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lk 288 (330)
T KOG2991|consen 209 SKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLK 288 (330)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 00 577778877777765 34555566665533
Q ss_pred H-HHHHHHHHHHHHHHhh
Q 003431 768 I-IREIKQLKQRREQISS 784 (820)
Q Consensus 768 L-LKEIKQLKkTREKViA 784 (820)
- =++|.+|++-.++|+.
T Consensus 289 etr~~Iq~l~k~~~q~sq 306 (330)
T KOG2991|consen 289 ETRKEIQRLKKGLEQVSQ 306 (330)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 3 2477777777766663
No 353
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=54.38 E-value=87 Score=27.36 Aligned_cols=45 Identities=13% Similarity=0.198 Sum_probs=25.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003431 672 AQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARE 716 (820)
Q Consensus 672 AQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~ 716 (820)
++.++.+.+..=...-.+++....+..+|..+++.|+.+...+|.
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444443333444556666667777777777777766666553
No 354
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=54.31 E-value=2.2e+02 Score=28.06 Aligned_cols=28 Identities=29% Similarity=0.353 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003431 685 AIRDDIQTIRASYKEYAEKLEAAISDER 712 (820)
Q Consensus 685 aIieEIKAKRAERsELIeQLKALRaE~R 712 (820)
.|...+......+.+....+.....+++
T Consensus 57 ~I~~~l~~Ae~~~~ea~~~~~e~e~~L~ 84 (167)
T PRK08475 57 KISKRLEEIQEKLKESKEKKEDALKKLE 84 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333333333333333333
No 355
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=54.16 E-value=2.1e+02 Score=33.66 Aligned_cols=71 Identities=13% Similarity=0.009 Sum_probs=34.1
Q ss_pred CCCCCcccccccccccccccCCCCCCCCCcccccccCCCCccccccCc-------eeEEeccCCCChHHHHHHHHHHHHH
Q 003431 604 EDGDRTFQDVEGIERSDRCETQTSTPEGSTVDASESRNIGVEVVKQPF-------YFLVKVPRYDDENLREQIKAAQSKV 676 (820)
Q Consensus 604 ~~~~~~~~~~~~~E~v~r~e~~~~tD~~~pkDA~Dewp~~kqvpkhsF-------YYfVRVPRYDDEkLKAKIDeAQkEI 676 (820)
.|-+.|+++--|-+.+++.... ..-...|+....|+....+-|.. =|-.+ +.+-|-.+|-++++++..+
T Consensus 120 Pd~t~t~~~s~ks~~~~~~r~~---se~~~~d~~~~~~~~~~a~d~~~s~~~q~~d~~e~-~~~kdSQlkvrlqe~~~ll 195 (554)
T KOG4677|consen 120 PDPTSTYSLSSKSFFRGRTRPG---SEQSLSDALSDTPAKSYAPDLGRSKGEQYRDYSED-WSPKDSQLKVRLQEVRRLL 195 (554)
T ss_pred CCCCCCccccccchhhhhcccc---hhhhccccccccchhhcccccccchhhhHhhHhhh-cccchhhHHHHHHHHHHHH
Confidence 5666677766666777776643 22223344444444333221111 01122 2233556677776666654
Q ss_pred HH
Q 003431 677 DE 678 (820)
Q Consensus 677 qK 678 (820)
..
T Consensus 196 ~~ 197 (554)
T KOG4677|consen 196 KG 197 (554)
T ss_pred Hh
Confidence 43
No 356
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=54.05 E-value=1.5e+02 Score=25.86 Aligned_cols=37 Identities=3% Similarity=0.185 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 700 YAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 700 LIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
++.++..++.++..++..+.....+++.+..++..|.
T Consensus 3 ~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~ 39 (106)
T PF01920_consen 3 LQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELE 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555444455555554444
No 357
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=54.00 E-value=2.5e+02 Score=28.34 Aligned_cols=53 Identities=17% Similarity=0.222 Sum_probs=37.1
Q ss_pred eEEeccCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHH
Q 003431 653 FLVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLE 705 (820)
Q Consensus 653 YfVRVPRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLK 705 (820)
|.+|=|.+.=.+++..|+.++..|..+-+....|....+.+=....+|...+.
T Consensus 7 ~~~~~~d~eF~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~ 59 (200)
T cd07624 7 YLLKNRSPEFDKMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQ 59 (200)
T ss_pred hhhcCCCccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777778899999999998887766666666555555555555544444
No 358
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=53.93 E-value=1e+02 Score=36.92 Aligned_cols=75 Identities=20% Similarity=0.310 Sum_probs=49.3
Q ss_pred ChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhh
Q 003431 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKR---QEIDSVQSRINMMK 736 (820)
Q Consensus 662 DEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKR---KELdpLQEaL~KLR 736 (820)
-..++.+|+.+++++..+++.-..+......+..+..+....+..+..++...+..+.++. .+.+.|...+..|+
T Consensus 236 ~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLk 313 (670)
T KOG0239|consen 236 ESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELK 313 (670)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445666778888887777777777777777777766666666666666666665555555 55556666665555
No 359
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=53.86 E-value=3.1e+02 Score=32.60 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=15.8
Q ss_pred CChHhHHHHHHhhhhhhhcC
Q 003431 739 ISVDDIDGSIRNMEHRIAHE 758 (820)
Q Consensus 739 SSeEEIDarIKsLEyRIQHE 758 (820)
..+-+|+.+|-.|.||+-|-
T Consensus 358 ~~lkDLd~~~~aLs~rld~q 377 (531)
T PF15450_consen 358 RQLKDLDDHILALSWRLDLQ 377 (531)
T ss_pred HHHHHHHHHHHHHhhhhhHH
Confidence 46788899999999987553
No 360
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=53.77 E-value=2.9e+02 Score=30.65 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=10.2
Q ss_pred CChHHHHHHHHHHHHHH
Q 003431 661 DDENLREQIKAAQSKVD 677 (820)
Q Consensus 661 DDEkLKAKIDeAQkEIq 677 (820)
+-..+..+++.+...+.
T Consensus 261 ~~~e~~q~Ld~l~~rL~ 277 (438)
T PRK00286 261 DRAELLQRLQQLQQRLA 277 (438)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 34456667777666654
No 361
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=53.69 E-value=1.5e+02 Score=29.74 Aligned_cols=76 Identities=12% Similarity=0.166 Sum_probs=26.0
Q ss_pred CChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 661 DDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
+-..++..-..+...|..++..-.....++......+..|..++..|+.+.+.+...+.+|.+-+.-|+..+--|.
T Consensus 82 ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~ 157 (194)
T PF08614_consen 82 ELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQ 157 (194)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555555544444555555555555556666666666666666666666665555555554444
No 362
>PRK09343 prefoldin subunit beta; Provisional
Probab=53.69 E-value=1.4e+02 Score=28.36 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=10.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Q 003431 691 QTIRASYKEYAEKLEAAISDERSAR 715 (820)
Q Consensus 691 KAKRAERsELIeQLKALRaE~RqlR 715 (820)
+..-.+...+..++..+..+...+.
T Consensus 10 q~~~~~~q~lq~~l~~~~~q~~~le 34 (121)
T PRK09343 10 QAQLAQLQQLQQQLERLLQQKSQID 34 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444443333
No 363
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=53.62 E-value=82 Score=33.17 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHHHHHhh
Q 003431 698 KEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNM 751 (820)
Q Consensus 698 sELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEIDarIKsL 751 (820)
-+|..||..|..+...+|..+++-.-+|+.+++..+.+- -+||.++..+
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y-----~dld~r~~~~ 105 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIY-----LQIDSLSSGG 105 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhcc
Confidence 355666666666666666666666666666666554443 2455555543
No 364
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=53.48 E-value=2.1e+02 Score=31.22 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 698 KEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 698 sELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
..|+.++..+..++..++..+..+.-.+..++..|..++
T Consensus 257 ~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~ 295 (444)
T TIGR03017 257 QNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLK 295 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 345556666666666666555554445555555555554
No 365
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=53.46 E-value=3.2e+02 Score=30.29 Aligned_cols=31 Identities=13% Similarity=0.123 Sum_probs=14.9
Q ss_pred hHHHHHHhhhhhhhc-CCCChHHHHHHHHHHH
Q 003431 743 DIDGSIRNMEHRIAH-ETLPLKEEKQIIREIK 773 (820)
Q Consensus 743 EIDarIKsLEyRIQH-ESLSLkEEKKLLKEIK 773 (820)
++...+..|..+++- ..|+..+-++-+.-++
T Consensus 94 ~~~~q~~~l~~~~~~~~~~s~~~y~~~~~~l~ 125 (332)
T TIGR01541 94 TFRKQQRDLNKAMTAKGLAGSDLYKEQLAAIK 125 (332)
T ss_pred HHHHHHHHHHHhhhhccccCHHHHHHHHHHHH
Confidence 344455555555543 4455555444443333
No 366
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=52.77 E-value=3e+02 Score=29.00 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=9.9
Q ss_pred HhhhhhHHHHHHHHHHH
Q 003431 794 LAFDQKDQIEEKMKVVL 810 (820)
Q Consensus 794 dSLDQKEAIQdQVKlLk 810 (820)
.++..-+.|+++|-.+.
T Consensus 163 sa~~~fer~e~kiee~e 179 (225)
T COG1842 163 SAMAAFERMEEKIEERE 179 (225)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 45555556666665543
No 367
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=52.77 E-value=2e+02 Score=30.22 Aligned_cols=63 Identities=11% Similarity=0.238 Sum_probs=34.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHHHHHhhhhhhhcC
Q 003431 694 RASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHE 758 (820)
Q Consensus 694 RAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEIDarIKsLEyRIQHE 758 (820)
.++...|...|...+.+....-..-.+.++|...|.......+. =...|...|..|+......
T Consensus 125 ~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqa--QL~~lQ~qv~~Lq~q~~~~ 187 (192)
T PF11180_consen 125 EARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQA--QLRQLQRQVRQLQRQANEP 187 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCC
Confidence 34555566666666666666555566666666666554444441 2334555666666555433
No 368
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=52.61 E-value=3.4e+02 Score=29.47 Aligned_cols=85 Identities=13% Similarity=0.228 Sum_probs=52.6
Q ss_pred CChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 003431 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYK---EYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKN 737 (820)
Q Consensus 661 DDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERs---ELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRN 737 (820)
.+.....++..+-.+++.++..|..+...++.+...-+ .|+...+ +.+...+.+.++..++++..|.....
T Consensus 185 ~~~~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~~~DDI~~~ll~~~~------~~~e~lf~~eL~k~~~~~~~l~~~~~ 258 (337)
T cd09234 185 EDEAIEKELKRILNKVNEMRKQRRSLEQQLRDAIHEDDITSKLVTTTG------GDMEDLFKEELKKHDQLVNLIEQNLA 258 (337)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHhcc------hhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45566777888888999999999999998866542222 2222221 13456677777778888887765552
Q ss_pred CCChHhHHHHHHhhhh
Q 003431 738 AISVDDIDGSIRNMEH 753 (820)
Q Consensus 738 ASSeEEIDarIKsLEy 753 (820)
--+.|-..|..+.-
T Consensus 259 --~Q~~ll~~i~~an~ 272 (337)
T cd09234 259 --AQENILKALTEANA 272 (337)
T ss_pred --HHHHHHHHHHHHHH
Confidence 22334444444443
No 369
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=52.54 E-value=2e+02 Score=33.52 Aligned_cols=75 Identities=13% Similarity=0.097 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhH
Q 003431 712 RSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDE 791 (820)
Q Consensus 712 RqlR~eldEKRKELdpLQEaL~KLRNASSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViANAAmQAK 791 (820)
+=++...++.|+|.+.||.... -++...+||--.++..|.-.= .-++-|+++.||+-|+.++-. |..||..
T Consensus 367 ~MFQ~kAdEARrEAE~LqrI~~-aK~~k~EEEYas~~~kl~l~e-----aee~r~~~~eelk~~e~s~~~---~~~mk~r 437 (446)
T PF07227_consen 367 KMFQLKADEARREAEGLQRIAL-AKSEKIEEEYASRYLKLRLNE-----AEEERKKKFEELKVLENSHRD---YDNMKMR 437 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHHHHhhccc---cchHHHH
Confidence 3445667788888888887662 234467777777776653210 113346789999999987543 4555555
Q ss_pred HHHh
Q 003431 792 VQLA 795 (820)
Q Consensus 792 IQdS 795 (820)
|+.-
T Consensus 438 M~~~ 441 (446)
T PF07227_consen 438 MQSE 441 (446)
T ss_pred HHHH
Confidence 5543
No 370
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=52.51 E-value=81 Score=30.50 Aligned_cols=74 Identities=18% Similarity=0.307 Sum_probs=53.2
Q ss_pred ChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003431 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (820)
Q Consensus 662 DEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KL 735 (820)
....+..+.++-..|-.+-+.-..++..+...-.--.+-..+|+.|..+++.....+.++.++.+.|...++.+
T Consensus 64 ~~~~~~~~~elA~dIi~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 137 (144)
T PF11221_consen 64 PEEFEENIKELATDIIRKAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQEL 137 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778777777777766667777777775555555567888888888888888888877777777666544
No 371
>PTZ00121 MAEBL; Provisional
Probab=52.45 E-value=4e+02 Score=35.70 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=17.7
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHH
Q 003431 757 HETLPLKEEKQIIREIKQLKQRREQ 781 (820)
Q Consensus 757 HESLSLkEEKKLLKEIKQLKkTREK 781 (820)
-+-+...||.|.+.||.+++..|..
T Consensus 1239 aEEAkraEEeR~~EE~Rk~Eear~a 1263 (2084)
T PTZ00121 1239 AEEAKKAEEERNNEEIRKFEEARMA 1263 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777888888877777643
No 372
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=52.12 E-value=6e+02 Score=32.27 Aligned_cols=134 Identities=13% Similarity=0.254 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVD 742 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeE 742 (820)
++++.++-.+++++++++.+-..+..+-..+..+.++...|+...+.-.-.......+.-..+..++.+.+.+- .--+
T Consensus 413 ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~--~K~e 490 (980)
T KOG0980|consen 413 EEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAE--TKTE 490 (980)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhH
Q ss_pred hHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHH-HHHHhhcccchhHHHHhhhhhHHHHHHHHH
Q 003431 743 DIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQR-REQISSSIGEHDEVQLAFDQKDQIEEKMKV 808 (820)
Q Consensus 743 EIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkT-REKViANAAmQAKIQdSLDQKEAIQdQVKl 808 (820)
++.....+|+..+.. ++.|+++|+.+ .-...+..+..+++.+.+.+|+..=.-++.
T Consensus 491 ~~~~~le~l~~El~~----------l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~ 547 (980)
T KOG0980|consen 491 SQAKALESLRQELAL----------LLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVA 547 (980)
T ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
No 373
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=52.04 E-value=1e+02 Score=31.11 Aligned_cols=77 Identities=14% Similarity=0.221 Sum_probs=38.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003431 659 RYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS---YKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (820)
Q Consensus 659 RYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAE---RsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KL 735 (820)
.++.+.+..++..++.++..++.........++..+.- -.--..++..++.++..++..+...+.+++.++..++.+
T Consensus 56 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 135 (322)
T TIGR01730 56 RLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVEAAQADLEAAKASLASAQLNLRYT 135 (322)
T ss_pred EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 35777888888888777666544433332222221110 001123344555555555555555555555555555443
No 374
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=52.03 E-value=3.1e+02 Score=28.89 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=16.7
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhH
Q 003431 660 YDDENLREQIKAAQSKVDEKTRSR 683 (820)
Q Consensus 660 YDDEkLKAKIDeAQkEIqKLNQaR 683 (820)
.|++.+..+++.++..+..++...
T Consensus 74 ld~~~~~~~l~~~~a~l~~~~~~l 97 (331)
T PRK03598 74 LDAAPYENALMQAKANVSVAQAQL 97 (331)
T ss_pred EChHHHHHHHHHHHHHHHHHHHHH
Confidence 477778888888887766555443
No 375
>PRK11519 tyrosine kinase; Provisional
Probab=51.90 E-value=1.8e+02 Score=34.52 Aligned_cols=55 Identities=11% Similarity=0.217 Sum_probs=25.4
Q ss_pred ChHHHHHHHHHHHH--HHHHhhhHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003431 662 DENLREQIKAAQSK--VDEKTRSRDA-IRDDIQTIRASYKEYAEKLEAAISDERSARE 716 (820)
Q Consensus 662 DEkLKAKIDeAQkE--IqKLNQaR~a-IieEIKAKRAERsELIeQLKALRaE~RqlR~ 716 (820)
||..-++|-.+-.+ |+...+.|.. ....+.=+..+..++..+|+.+..++..||.
T Consensus 238 dP~~Aa~iaN~l~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~ 295 (719)
T PRK11519 238 DREQIRDILNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQ 295 (719)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655444332 2222222222 3333344455555555555555555555553
No 376
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=51.74 E-value=5.8e+02 Score=31.97 Aligned_cols=9 Identities=11% Similarity=0.091 Sum_probs=3.9
Q ss_pred cCCCCCCcc
Q 003431 442 RDVPGNEAL 450 (820)
Q Consensus 442 ~d~~~~~~~ 450 (820)
|-|.|..+|
T Consensus 506 CPVCGS~~H 514 (1047)
T PRK10246 506 CPLCGSTSH 514 (1047)
T ss_pred cCCCCcccC
Confidence 344444444
No 377
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=51.37 E-value=3.4e+02 Score=31.82 Aligned_cols=15 Identities=0% Similarity=0.302 Sum_probs=8.6
Q ss_pred hhhHHHHHHHHHHHH
Q 003431 797 DQKDQIEEKMKVVLS 811 (820)
Q Consensus 797 DQKEAIQdQVKlLkK 811 (820)
.++-++..|++.|..
T Consensus 165 ~~~~~L~~qi~~L~~ 179 (475)
T PRK10361 165 QERHTLAHEIRNLQQ 179 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334466666766653
No 378
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=51.36 E-value=2.8e+02 Score=28.19 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 003431 763 KEEKQIIREIKQLKQRREQIS 783 (820)
Q Consensus 763 kEEKKLLKEIKQLKkTREKVi 783 (820)
.++|+.-.||+.|+++-.++.
T Consensus 163 ~~~k~~~~ei~~lk~~~~ql~ 183 (189)
T PF10211_consen 163 EEEKKHQEEIDFLKKQNQQLK 183 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777755554
No 379
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=51.31 E-value=1.2e+02 Score=35.30 Aligned_cols=42 Identities=7% Similarity=0.279 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHH
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLE 705 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLK 705 (820)
.|-++..+++++++.+...=..+..+-+.+|.+...+..|+.
T Consensus 63 Tlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~ 104 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQ 104 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 355555555556555555544555555555554444444443
No 380
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=51.30 E-value=1.2e+02 Score=30.41 Aligned_cols=73 Identities=14% Similarity=0.301 Sum_probs=34.2
Q ss_pred cCCCChHHHH-HHHHHHH--------HHHHHhhhHHHHHHH-------------HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003431 658 PRYDDENLRE-QIKAAQS--------KVDEKTRSRDAIRDD-------------IQTIRASYKEYAEKLEAAISDERSAR 715 (820)
Q Consensus 658 PRYDDEkLKA-KIDeAQk--------EIqKLNQaR~aIieE-------------IKAKRAERsELIeQLKALRaE~RqlR 715 (820)
|++.|+.|-- -..+|++ +|-.|+|+|.-+-.. ...+..++..|..+++.|+.++..++
T Consensus 22 d~lsDd~LvsmSVReLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~ 101 (135)
T KOG4196|consen 22 DRLSDDELVSMSVRELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLR 101 (135)
T ss_pred CCcCHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666665532 2334433 566677777655221 11122344444455555555544444
Q ss_pred HHHHHHHHHHHHHHH
Q 003431 716 ESLKSKRQEIDSVQS 730 (820)
Q Consensus 716 ~eldEKRKELdpLQE 730 (820)
.+++.-+...+.|+.
T Consensus 102 ~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 102 RELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHHHHHh
Confidence 444444444444443
No 381
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=51.02 E-value=3.7e+02 Score=29.44 Aligned_cols=74 Identities=9% Similarity=0.092 Sum_probs=39.4
Q ss_pred hHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHhHH---HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 003431 663 ENLREQIKAAQ---SKVDEKTRSRDAIRDDIQTIRASYK---EYAEKLEAAISDE-------RSARESLKSKRQEIDSVQ 729 (820)
Q Consensus 663 EkLKAKIDeAQ---kEIqKLNQaR~aIieEIKAKRAERs---ELIeQLKALRaE~-------RqlR~eldEKRKELdpLQ 729 (820)
+.+..+|..++ .+++.+++.|..+...++.+...-+ .|+..+..+.... ..+...+.+.++.+++++
T Consensus 188 ~~~~~~i~~Lr~~l~~l~~l~~eR~~~~~~Lk~k~~~DDI~~~ll~~~~~~~~~~~~~~i~~~~fe~lf~~eL~kf~~~~ 267 (353)
T cd09236 188 PELERHVRALRVSLEELDRLESRRRRKVERARTKARADDIRPEILREAARLEREYPATEVAPAHFEDLFDKRLAKYDKDL 267 (353)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHhhhcccccccccHHHHHHHHHHHHHHhhHHH
Confidence 34555555544 4666677777777777755432211 2222222221110 124566777777788888
Q ss_pred HHHHHhh
Q 003431 730 SRINMMK 736 (820)
Q Consensus 730 EaL~KLR 736 (820)
..|....
T Consensus 268 ~~l~~~~ 274 (353)
T cd09236 268 DAVSEEA 274 (353)
T ss_pred HHHHHHH
Confidence 7776655
No 382
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=50.84 E-value=2.2e+02 Score=34.33 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q 003431 762 LKEEKQIIREIKQLKQR 778 (820)
Q Consensus 762 LkEEKKLLKEIKQLKkT 778 (820)
|.-+|++=.|-.+|+..
T Consensus 382 l~knr~lq~e~a~Lr~~ 398 (629)
T KOG0963|consen 382 LEKNRKLQNENASLRVA 398 (629)
T ss_pred HHHHhhhhHHHHHHhcc
Confidence 44455555555554433
No 383
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=50.84 E-value=1.3e+02 Score=35.10 Aligned_cols=42 Identities=10% Similarity=0.334 Sum_probs=21.3
Q ss_pred EEeccCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 003431 654 LVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRA 695 (820)
Q Consensus 654 fVRVPRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRA 695 (820)
|.++.-|+...-.+.+.+++++++++.+.+.++.+++++...
T Consensus 202 f~~~~~p~~~~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~ 243 (646)
T PRK05771 202 FERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAK 243 (646)
T ss_pred CEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443334444566666666666555555555544444443
No 384
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=50.82 E-value=1.3e+02 Score=33.07 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhH
Q 003431 663 ENLREQIKAAQSKVDEKTRSR 683 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR 683 (820)
+.+.+++..+..+++.+.+.|
T Consensus 264 d~i~~rl~~L~~~~~~l~~~~ 284 (388)
T PF04912_consen 264 DSIERRLKSLLSELEELAEKR 284 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 334444444444444443333
No 385
>TIGR01801 CM_A chorismate mutase domain of gram positive AroA protein. This model represents a small clade of chorismate mutase domains N-terminally fused to the first enzyme in the chorismate pathway, 2-dehydro-3-deoxyphosphoheptanoate aldolase (DAHP synthetase, AroA) which are found in some gram positive species and Deinococcus. Only in Deinococcus, where this domain is the sole CM domain in the genome can a trusted assignment of function be made. In the other species there is at least one other trusted CM domain present. The similarity between the Deinococcus gene and the others in this clade is sufficiently strong (~44% identity), that the whole clade can be trusted to be functional. The possibility exists, however, that in the gram positive species the fusion to the first enzyme in the pathway has evolved a separate, regulatory role.
Probab=50.76 E-value=1.2e+02 Score=28.08 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRA 695 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRA 695 (820)
..++++|++++.+|-++-..|..+..++.+.|.
T Consensus 7 ~~lR~~ID~ID~eIl~LL~eR~~~~~~Ig~~K~ 39 (102)
T TIGR01801 7 EDLRAEVDQLNRQILALISRRGEVVAQIGHAKS 39 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999998877764
No 386
>PHA03011 hypothetical protein; Provisional
Probab=50.60 E-value=91 Score=30.28 Aligned_cols=83 Identities=14% Similarity=0.280 Sum_probs=51.3
Q ss_pred EEeccCCCChHHHHHHHHHHH-------HHHHHhh-hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 654 LVKVPRYDDENLREQIKAAQS-------KVDEKTR-SRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEI 725 (820)
Q Consensus 654 fVRVPRYDDEkLKAKIDeAQk-------EIqKLNQ-aR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKEL 725 (820)
++.+|+|.-.-+.+--++--. +|...+. .-.+|++.+..++++-.+|..+..-+.++.+-+...+...-+++
T Consensus 22 iIN~p~y~sN~LnkfddEYLanL~f~P~qi~dfk~GD~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I 101 (120)
T PHA03011 22 IINIPPYESNILNKFDDEYLANLIFEPEQIFDFKEGDINAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEI 101 (120)
T ss_pred HhcCCcccchHHHhccHHHHHhhhcCHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 566677654444333322222 3333333 33456777777777777777777777777777777777766667
Q ss_pred HHHHHHHHHhh
Q 003431 726 DSVQSRINMMK 736 (820)
Q Consensus 726 dpLQEaL~KLR 736 (820)
--|+..++||+
T Consensus 102 ~~LraeIDkLK 112 (120)
T PHA03011 102 HFLRAEIDKLK 112 (120)
T ss_pred HHHHHHHHHHH
Confidence 67777777666
No 387
>PRK09343 prefoldin subunit beta; Provisional
Probab=50.45 E-value=2.3e+02 Score=26.90 Aligned_cols=6 Identities=33% Similarity=0.578 Sum_probs=2.2
Q ss_pred HHhhhh
Q 003431 748 IRNMEH 753 (820)
Q Consensus 748 IKsLEy 753 (820)
|+.||.
T Consensus 87 ik~lek 92 (121)
T PRK09343 87 SRTLEK 92 (121)
T ss_pred HHHHHH
Confidence 333333
No 388
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=50.39 E-value=3.8e+02 Score=29.47 Aligned_cols=20 Identities=10% Similarity=0.270 Sum_probs=13.9
Q ss_pred CCChHHHHHHHHHHHHHHHH
Q 003431 660 YDDENLREQIKAAQSKVDEK 679 (820)
Q Consensus 660 YDDEkLKAKIDeAQkEIqKL 679 (820)
.|++.+..++.+++.++...
T Consensus 92 LD~~~~~~~l~~A~a~l~~a 111 (390)
T PRK15136 92 LDPTDAEQAFEKAKTALANS 111 (390)
T ss_pred ECcHHHHHHHHHHHHHHHHH
Confidence 36677788888887776543
No 389
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=50.31 E-value=1e+02 Score=28.61 Aligned_cols=52 Identities=12% Similarity=0.335 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhcCCChHhHHHHHHhhhhhh
Q 003431 702 EKLEAAISDERSARESLKSK--RQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRI 755 (820)
Q Consensus 702 eQLKALRaE~RqlR~eldEK--RKELdpLQEaL~KLRNASSeEEIDarIKsLEyRI 755 (820)
+++.....+...+...++.- ++++..|+-.|.+|| .....+.++|+.+.+..
T Consensus 42 ~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~--G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 42 ERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELR--GELKELSARLQGVSHQL 95 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHH
Confidence 33333333333333444442 555666666666666 34555666666555443
No 390
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=50.04 E-value=1.6e+02 Score=36.44 Aligned_cols=73 Identities=7% Similarity=0.199 Sum_probs=52.4
Q ss_pred CChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHh---hcc--cchhHHHHhhhhhH-HHHHHHHHHHHh
Q 003431 739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQIS---SSI--GEHDEVQLAFDQKD-QIEEKMKVVLSS 812 (820)
Q Consensus 739 SSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKVi---ANA--AmQAKIQdSLDQKE-AIQdQVKlLkKE 812 (820)
.+..+|++++..+|..++++++ .+=.++|.|+.++=.+-..-. ... .-+.+++++|++.- .+++|..++..+
T Consensus 565 l~~~dLq~Mmd~ieela~~G~~--~~A~qlL~qlq~mmenlq~~q~~~g~~~~~~~~~~~q~m~~L~e~lr~QQ~L~D~t 642 (851)
T TIGR02302 565 LRQQDLQNMMDQIENLARSGDR--DQAKQLLSQLQQMMNNLQMGQPGQGQQMGDQSGDMEQQMNKLGELMRKQQQLRDET 642 (851)
T ss_pred cCHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHhccCcCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999987 566789999888766544211 000 12235678888765 778888877765
Q ss_pred h
Q 003431 813 M 813 (820)
Q Consensus 813 L 813 (820)
.
T Consensus 643 f 643 (851)
T TIGR02302 643 F 643 (851)
T ss_pred H
Confidence 4
No 391
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=49.20 E-value=68 Score=27.50 Aligned_cols=21 Identities=14% Similarity=0.291 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 003431 716 ESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 716 ~eldEKRKELdpLQEaL~KLR 736 (820)
..+....+++..++..+...+
T Consensus 87 ~~i~a~~~~~~~~~~~l~~~~ 107 (125)
T PF13801_consen 87 AAIEALLEEIREAQAELRQER 107 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555444433
No 392
>PRK14143 heat shock protein GrpE; Provisional
Probab=49.06 E-value=2.4e+02 Score=30.07 Aligned_cols=40 Identities=5% Similarity=0.273 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHH
Q 003431 666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLE 705 (820)
Q Consensus 666 KAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLK 705 (820)
..++..++.+|..+.+....+..++..++++..+|+.+..
T Consensus 66 ~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~ 105 (238)
T PRK14143 66 AARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTS 105 (238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444444444455555555555543
No 393
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=48.72 E-value=3.9e+02 Score=29.10 Aligned_cols=11 Identities=9% Similarity=-0.009 Sum_probs=4.5
Q ss_pred HhhcccchhHH
Q 003431 782 ISSSIGEHDEV 792 (820)
Q Consensus 782 ViANAAmQAKI 792 (820)
.+.|..|+..|
T Consensus 185 ~~~N~~m~kei 195 (258)
T PF15397_consen 185 TLENQVMQKEI 195 (258)
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 394
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=48.62 E-value=1.3e+02 Score=31.90 Aligned_cols=65 Identities=18% Similarity=0.374 Sum_probs=51.2
Q ss_pred CChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEI 725 (820)
Q Consensus 661 DDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKEL 725 (820)
|-..|.+.-..|.++...+.+.+..+-.+.+.+.++|..+....+...++....|..+..++.++
T Consensus 39 d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~~e~~r~~fekekqq~ 103 (228)
T PRK06800 39 DHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEAARQQFQKEQQET 103 (228)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666777888888888888888888999999998888888888888887777766553
No 395
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=48.53 E-value=3.5e+02 Score=28.53 Aligned_cols=16 Identities=25% Similarity=0.632 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 003431 717 SLKSKRQEIDSVQSRI 732 (820)
Q Consensus 717 eldEKRKELdpLQEaL 732 (820)
.+..+...++.+.+.|
T Consensus 192 ~l~~~~~~Ld~l~~rL 207 (319)
T PF02601_consen 192 KLEQQQQRLDELKQRL 207 (319)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 396
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=48.50 E-value=1.7e+02 Score=24.88 Aligned_cols=64 Identities=16% Similarity=0.323 Sum_probs=37.7
Q ss_pred eccCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 656 KVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIR-ASYKEYAEKLEAAISDERSARESLK 719 (820)
Q Consensus 656 RVPRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKR-AERsELIeQLKALRaE~RqlR~eld 719 (820)
+++....+.=+..|..++..|.+....-.++--+++..- +.|..|..+++..+.++..++..+.
T Consensus 14 ~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 14 RIKNLSGEQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444556666667777776666655555555555443 6666667777666666666665543
No 397
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=47.85 E-value=92 Score=28.89 Aligned_cols=47 Identities=9% Similarity=0.186 Sum_probs=32.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 675 KVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSK 721 (820)
Q Consensus 675 EIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEK 721 (820)
++..++..-++|...+..+..+.+.|..+|+.|-+-.|+.|..+.+-
T Consensus 27 E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~ 73 (83)
T PF03670_consen 27 EYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQ 73 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555567777777778888888888888887777777666543
No 398
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=47.40 E-value=64 Score=35.64 Aligned_cols=29 Identities=17% Similarity=0.415 Sum_probs=14.7
Q ss_pred ceeEEeccCCC-ChHHHHHHHHHHHHHHHH
Q 003431 651 FYFLVKVPRYD-DENLREQIKAAQSKVDEK 679 (820)
Q Consensus 651 FYYfVRVPRYD-DEkLKAKIDeAQkEIqKL 679 (820)
.|||..+.-.+ ...++.+|..++++|.++
T Consensus 232 ~~~~A~l~~~~~~~~l~~~~~~~~~~i~~l 261 (406)
T PF02388_consen 232 KFFLAELNGKEYLESLQEKLEKLEKEIEKL 261 (406)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666654433 444555555555555544
No 399
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=47.32 E-value=3.1e+02 Score=27.54 Aligned_cols=24 Identities=8% Similarity=0.379 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 713 SARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 713 qlR~eldEKRKELdpLQEaL~KLR 736 (820)
.++..+.....+++.+...|..+|
T Consensus 114 ~L~~~i~~~q~~~~~~i~~L~~f~ 137 (184)
T PF05791_consen 114 DLQDQIQKNQDKVQALINELNDFK 137 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555
No 400
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=47.00 E-value=61 Score=36.97 Aligned_cols=64 Identities=11% Similarity=0.227 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 669 IKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINM 734 (820)
Q Consensus 669 IDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~K 734 (820)
|.+|.+||.-+++.+..... ++.++..+.++...+..++ +...++..+++-+++++.++..+..
T Consensus 324 i~ELe~Ei~~~~~~~~~~~~-l~~L~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (448)
T PF05761_consen 324 IPELEQEIEIWNSKKYRFEE-LQELEELLEELQDHLDQLR-SSSELRPDISELRKERRELRREMKE 387 (448)
T ss_dssp -TTHHHHHHHHHHTHHHHHH-HHHHHHHCHHHHCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ehhhhhhhhhhhhcchhhhH-HHHHHHHHHHHHHHhcccc-cchhhHHHHHHHHHHHHHHHHHHhh
Confidence 44667777777666654433 7777777777777766555 5556666666666666666666643
No 401
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=47.00 E-value=1.3e+02 Score=26.85 Aligned_cols=32 Identities=13% Similarity=0.406 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhhcCCChHhHHHHHHhhhhh
Q 003431 721 KRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHR 754 (820)
Q Consensus 721 KRKELdpLQEaL~KLRNASSeEEIDarIKsLEyR 754 (820)
.|+|++.++..|.++|. -.+.|+++|+.||.+
T Consensus 48 tREEFd~q~~~L~~~r~--kl~~LEarl~~LE~~ 79 (79)
T PF04380_consen 48 TREEFDAQKAVLARTRE--KLEALEARLAALEAQ 79 (79)
T ss_pred cHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcC
Confidence 48889999999988884 578888888888753
No 402
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=47.00 E-value=4.1e+02 Score=28.88 Aligned_cols=163 Identities=15% Similarity=0.163 Sum_probs=88.1
Q ss_pred EeccCCCChHHHHHHHHHHHHHHHHhhhHH------HHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 655 VKVPRYDDENLREQIKAAQSKVDEKTRSRD------AIRDDI-QTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDS 727 (820)
Q Consensus 655 VRVPRYDDEkLKAKIDeAQkEIqKLNQaR~------aIieEI-KAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdp 727 (820)
-++...|..++-..+.++...++.+.-.+. .+..++ ...+.....|..+++.+..+...+-..+...+.+|..
T Consensus 37 ~~v~~~d~~~vg~~L~~L~~~~~~~dp~~~~~~~~~~~l~klf~k~~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~ 116 (333)
T PF05816_consen 37 DRVRNKDSGEVGELLNELRKEMDELDPSELKDEKKKGFLGKLFGKAKNSLERYFAKYQSVQSQIDKIIAELESGQDELLR 116 (333)
T ss_pred HHHHHhccchHhHHHHHHHHHHHhCChhhhhhhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556777777777777777776665543 333332 2234556666666666666666666666666555555
Q ss_pred HHHHHHHhh--cCCChHhHHHHHHhhhhhhhc---CCCChHHHH--------HHHHH-HHHHHHHHHHHhhcccchhHHH
Q 003431 728 VQSRINMMK--NAISVDDIDGSIRNMEHRIAH---ETLPLKEEK--------QIIRE-IKQLKQRREQISSSIGEHDEVQ 793 (820)
Q Consensus 728 LQEaL~KLR--NASSeEEIDarIKsLEyRIQH---ESLSLkEEK--------KLLKE-IKQLKkTREKViANAAmQAKIQ 793 (820)
=...|..|. +...-.+|...|+-.+..++. .-+|..+++ +.+.. -+.|...+.++-.+...+.-.+
T Consensus 117 d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~~~~~~~~~~~~d~~~~q~~~~~~~~l~~leqRi~DL~~~~~va~ 196 (333)
T PF05816_consen 117 DNAMLDQLYEKNWEYYQELEKYIAAGELKLEELEAELLPALQADAEGDQMDAQELADLEQALFRLEQRIQDLQLSRQVAI 196 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555 223455555556555554433 224433222 11111 2234444445555556666666
Q ss_pred HhhhhhHHHHHHHHHHHHhhcccc
Q 003431 794 LAFDQKDQIEEKMKVVLSSMFSSF 817 (820)
Q Consensus 794 dSLDQKEAIQdQVKlLkKEL~s~f 817 (820)
+++-+-+-||.-=..|..-..+.|
T Consensus 197 Q~~pqir~iq~nN~~Li~ki~~a~ 220 (333)
T PF05816_consen 197 QTAPQIRMIQNNNRELIEKIQSAI 220 (333)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHH
Confidence 777766666665555554444443
No 403
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=46.98 E-value=3e+02 Score=27.24 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003431 685 AIRDDIQTIRASYKEYAEKLEAAISDERSAR 715 (820)
Q Consensus 685 aIieEIKAKRAERsELIeQLKALRaE~RqlR 715 (820)
.|...+......+.+-...+.....++...|
T Consensus 62 ~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~ 92 (184)
T PRK13455 62 GIRSELEEARALREEAQTLLASYERKQREVQ 92 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333333333333333333333
No 404
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=46.78 E-value=1.4e+02 Score=35.63 Aligned_cols=101 Identities=16% Similarity=0.299 Sum_probs=55.1
Q ss_pred EeccCCCChHHHHHHH-HHHHHHHHHhhhHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHHHH------------
Q 003431 655 VKVPRYDDENLREQIK-AAQSKVDEKTRSRDAIR-----DDIQTIRASYKEYAEKLEAAISDERSARE------------ 716 (820)
Q Consensus 655 VRVPRYDDEkLKAKID-eAQkEIqKLNQaR~aIi-----eEIKAKRAERsELIeQLKALRaE~RqlR~------------ 716 (820)
.|+-.-+..+.+.|+. .|.++|.+|...|++|- .+|+-|+ .+-.++.-++.-+++.+....
T Consensus 29 ek~~~~~n~sqkeK~e~DLKkEIKKLQRlRdQIKtW~ss~dIKDK~-~L~d~RrlIE~~MErfK~vEke~KtKa~SkegL 107 (575)
T KOG2150|consen 29 EKLHSANNVSQKEKLESDLKKEIKKLQRLRDQIKTWQSSSDIKDKD-SLLDNRRLIEQRMERFKAVEKEMKTKAFSKEGL 107 (575)
T ss_pred HHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHH-HHHHHHHHHHHHHHHHHHHHHHhhccccchhhc
Confidence 5555666777777774 57889999999999993 3444442 222333333333333333321
Q ss_pred --------HHHHHHHHHHHHHHHHHHhhc-C--CChHhHHHHHHhhhhhhh
Q 003431 717 --------SLKSKRQEIDSVQSRINMMKN-A--ISVDDIDGSIRNMEHRIA 756 (820)
Q Consensus 717 --------eldEKRKELdpLQEaL~KLRN-A--SSeEEIDarIKsLEyRIQ 756 (820)
.-.+|++-++=|+..|+.|.. . .-.++++.+|.+-+|.++
T Consensus 108 ~~~~klDPkEkek~d~~~wi~~~ideLe~q~d~~ea~~~e~~~erh~~H~~ 158 (575)
T KOG2150|consen 108 SAAEKLDPKEKEKRDTMDWISNQIDELERQVDSFEAEELERFIERHRWHQQ 158 (575)
T ss_pred cccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222344455555555555551 1 122556666666666554
No 405
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=46.76 E-value=1.1e+02 Score=33.11 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 003431 665 LREQIKAAQSKVDE 678 (820)
Q Consensus 665 LKAKIDeAQkEIqK 678 (820)
.+.++..+++++..
T Consensus 219 ~~~~l~~a~~~l~~ 232 (344)
T PF12777_consen 219 KRQKLEEAEAELEE 232 (344)
T ss_dssp HHHHHHHCCCCHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44445454444443
No 406
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=46.68 E-value=65 Score=29.86 Aligned_cols=64 Identities=16% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHhhhhhh---hcCCCChHHH-HHHHHHHHHHH-----------------HHHHHHhhcccchhHHHHhhhhhHHHH
Q 003431 745 DGSIRNMEHRI---AHETLPLKEE-KQIIREIKQLK-----------------QRREQISSSIGEHDEVQLAFDQKDQIE 803 (820)
Q Consensus 745 DarIKsLEyRI---QHESLSLkEE-KKLLKEIKQLK-----------------kTREKViANAAmQAKIQdSLDQKEAIQ 803 (820)
+.+|++||-.+ ......|.+| +.+.+||+-|+ ..|+++..+.... --+.+|..-
T Consensus 2 EdkI~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~-----~~gerE~l~ 76 (86)
T PF12711_consen 2 EDKIKRLEKLLDGKLPSESYLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY-----VEGEREMLL 76 (86)
T ss_pred chHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHH
Q ss_pred HHHHHHHHhh
Q 003431 804 EKMKVVLSSM 813 (820)
Q Consensus 804 dQVKlLkKEL 813 (820)
.++-.|+..|
T Consensus 77 ~eis~L~~~l 86 (86)
T PF12711_consen 77 QEISELRDQL 86 (86)
T ss_pred HHHHHHHhhC
No 407
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=46.66 E-value=1.8e+02 Score=32.43 Aligned_cols=52 Identities=17% Similarity=0.410 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 685 AIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 685 aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
.+..+|+++..+...+..+|..+......+-..++.++.|++.+|+.|..|-
T Consensus 109 vlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lq 160 (338)
T KOG3647|consen 109 VLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQ 160 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777777777777777777788888888888888888666555
No 408
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=46.56 E-value=2.3e+02 Score=25.86 Aligned_cols=62 Identities=6% Similarity=0.084 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 670 KAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSR 731 (820)
Q Consensus 670 DeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEa 731 (820)
+....++..+.+....+..++.....+.-..-..+++|..+.+.++..+..-..-+..|++.
T Consensus 20 ~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~ 81 (96)
T PF08647_consen 20 DKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKET 81 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33334444455555556666666666666666777778888888887777766666666663
No 409
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=46.49 E-value=6e+02 Score=30.62 Aligned_cols=132 Identities=8% Similarity=0.158 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHH---------HHhhhHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHH-------HHH
Q 003431 665 LREQIKAAQSKVD---------EKTRSRDAIRDDIQTIRASYKEY----AEKLEAAISDERSARESLKSK-------RQE 724 (820)
Q Consensus 665 LKAKIDeAQkEIq---------KLNQaR~aIieEIKAKRAERsEL----IeQLKALRaE~RqlR~eldEK-------RKE 724 (820)
++..+..+...|+ .++|.|..+...+.++++-..+| ++.|..+-.+.+++-..++.- .++
T Consensus 60 ~E~~~n~~~~~~~~~v~a~nt~~~~q~y~~~~q~l~~i~~l~~~L~~ne~~~L~~~lq~~r~ll~qi~~~v~~~~~v~~~ 139 (673)
T COG4192 60 LETRSNEIRRRIQLIVSATNTVTLNQQYQRLQQDLTAIHALLASLPQNEQAALQQGLQELRQLLQQINDLVSARIDVDRR 139 (673)
T ss_pred hhhhhHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhhhheeHHHH
Confidence 4555555555554 34555666655555555433332 223333333333333322221 222
Q ss_pred HHHHHHHHHHhhcCCChHhHHHHHHhhhhhhhcCCCCh----HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhh
Q 003431 725 IDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPL----KEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFD 797 (820)
Q Consensus 725 LdpLQEaL~KLRNASSeEEIDarIKsLEyRIQHESLSL----kEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLD 797 (820)
+..+-+.|+=|.+ -.--|+....+.|.|++.|--=.. ..-++-+.+-+.+++-.+.|..+.....+|++++-
T Consensus 140 l~~~~~qidWLH~-Df~~Els~l~Qe~~WQq~Tlld~i~q~Q~dn~q~v~q~r~~Qqel~~vy~~~r~E~qi~~~LR 215 (673)
T COG4192 140 LALFAEQIDWLHQ-DFGMELSPLRQELQWQQETLLDGITQAQVDNGQRVLQYRLYQQELEEVYNVLRLEGQIQQSLR 215 (673)
T ss_pred HHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHhhhHhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333332 234467778888888887422111 12356777777888888889998888888887654
No 410
>PF04778 LMP: LMP repeated region; InterPro: IPR006864 This repeated sequence element is found in the LMP group of surface-located membrane proteins of Mycoplasma hominis. The the number of repeats in the protein affects the tendency of cells to spontaneously aggregate. Agglutination may be an important factor in colonization. Non-agglutinating microorganisms might easily be distributed whereas aggregation might provide a better chance to avoid an antibody response since some of the epitopes may be buried [].
Probab=46.49 E-value=3.5e+02 Score=27.85 Aligned_cols=141 Identities=9% Similarity=0.185 Sum_probs=76.3
Q ss_pred ChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CC
Q 003431 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNA-IS 740 (820)
Q Consensus 662 DEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNA-SS 740 (820)
|-+|..-=.+|.++|++-+|.-.. .-..++..-...|-.++-.+...+..+....+.+.+||++.+..+.++.+- ..
T Consensus 13 D~~IqqaK~~L~~ei~kA~q~~~s--nnt~~mqsa~~sL~~Ki~ei~~kL~~Fn~dKea~F~eLq~tr~~I~eFi~~~K~ 90 (157)
T PF04778_consen 13 DNEIQQAKTELDKEIQKANQAVAS--NNTASMQSAKSSLDAKITEITKKLEKFNKDKEAKFNELQQTRKQIDEFINKNKN 90 (157)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccC
Confidence 444444445666666666554321 112233344445555555666666777777777888888888888877721 12
Q ss_pred hHhHHHHHHhhhhhh-hcCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHhhccc
Q 003431 741 VDDIDGSIRNMEHRI-AHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSSMFSS 816 (820)
Q Consensus 741 eEEIDarIKsLEyRI-QHESLSLkEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKEL~s~ 816 (820)
-......|+.|.... ...|++.--=|. +.+.+|-.++..+..+=-.|+.+.++-|.++.+|...
T Consensus 91 NpnY~~li~~Lt~~kd~k~sVt~SSNKS------------dI~aAN~~L~qAL~~Ak~~K~~~~~~~ks~K~qL~~~ 155 (157)
T PF04778_consen 91 NPNYAELIKKLTQKKDSKNSVTESSNKS------------DIEAANQELKQALNKAKTHKEQADNQNKSIKEQLNNS 155 (157)
T ss_pred CccHHHHHHHHHHHHHhhccccccCcHH------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence 224445566655433 233444322222 2234444444444444444667777788888777643
No 411
>TIGR01805 CM_mono_grmpos monofunctional chorismate mutase, gram positive-type, clade 2. This model represents a clade of chorismate mutase proteins/domains from gram positive species. The sequence from Enterococcus is fused to the C-terminus of an aparrent acetyltransferase, and the seuence from Clostridium acetobutylicum (but not perfringens) is fused to the N-terminus of shikimate-5-dehydrogenase, another enzyme of the chorismate pathway. All the other members of this clade are mono-functional. Members of this clade from Streptococcus and Lactococcus have been found which represent the sole chorismate mutase domain in their respective genomes which also exhibit evidence of the enzymes of both the upstream and downstream branches of the chorismate pathways.
Probab=46.49 E-value=1.6e+02 Score=25.72 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS 696 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAE 696 (820)
+.++.+|+.++.+|-.+-..|..+..++-+.|..
T Consensus 2 ~~lR~~Id~iD~~i~~Ll~~R~~~~~~i~~~K~~ 35 (81)
T TIGR01805 2 ELIRKKIDEIDDKLVVLFEERMEVVKEIAAYKKK 35 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999888776643
No 412
>PF13514 AAA_27: AAA domain
Probab=46.45 E-value=6.9e+02 Score=31.32 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003431 683 RDAIRDDIQTIRASYKEYAEKLEAAISDER 712 (820)
Q Consensus 683 R~aIieEIKAKRAERsELIeQLKALRaE~R 712 (820)
+..+..++...+..+.....++..+..+..
T Consensus 675 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1111)
T PF13514_consen 675 REQLEEELQQLEQELEEAEAELQEAQEALE 704 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443333333
No 413
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=46.43 E-value=2.1e+02 Score=29.32 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=9.6
Q ss_pred ChHhHHHHHHhhhhhhh
Q 003431 740 SVDDIDGSIRNMEHRIA 756 (820)
Q Consensus 740 SeEEIDarIKsLEyRIQ 756 (820)
..+.|+..|..++.+-+
T Consensus 167 ~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 167 EAEALKEEIENAELEFQ 183 (190)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555666666665544
No 414
>PRK05560 DNA gyrase subunit A; Validated
Probab=46.38 E-value=3e+02 Score=33.62 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=34.2
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHh
Q 003431 755 IAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSS 812 (820)
Q Consensus 755 IQHESLSLkEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKE 812 (820)
|.-..|+-.|..+|.+|+++|++..+.+...-+...++++ -|.++++.+++.
T Consensus 422 m~L~~LT~~e~~kL~~E~~~l~~ei~~l~~iL~~~~~l~~------~i~~EL~~ikkk 473 (805)
T PRK05560 422 MRLQRLTGLERDKIEDEYKELLALIADLKDILASPERLLE------IIKEELLEIKEK 473 (805)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH------HHHHHHHHHHHH
Confidence 3344577788888888888888887777766666555543 344555555544
No 415
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=46.19 E-value=1.5e+02 Score=34.51 Aligned_cols=111 Identities=14% Similarity=0.192 Sum_probs=66.3
Q ss_pred EEeccCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 003431 654 LVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS----YKEYAEKLEAAISDERSA----RESLKSKRQEI 725 (820)
Q Consensus 654 fVRVPRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAE----RsELIeQLKALRaE~Rql----R~eldEKRKEL 725 (820)
|+|.=.|+=|.+|+.|..+++++..+.++-..+....+..+.+ |++|.=+-+.+|.++..+ =..+.+-.+.+
T Consensus 118 L~r~v~YeIP~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~lGI~G~nir~ELl~l~~~LP~~~~~i~~~i 197 (507)
T PF05600_consen 118 LVRNVNYEIPALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACKQLGIKGENIREELLELVKELPSLFDEIVEAI 197 (507)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHhhHHHHHHHHHHH
Confidence 6788889999999999999999998887776665555555543 333322222344443322 23444444445
Q ss_pred HHHHHHHHHhh---cCCChHhHHHHHHhhhhhhhcCCCChHH
Q 003431 726 DSVQSRINMMK---NAISVDDIDGSIRNMEHRIAHETLPLKE 764 (820)
Q Consensus 726 dpLQEaL~KLR---NASSeEEIDarIKsLEyRIQHESLSLkE 764 (820)
..|+.++.--+ .+...+.-..-+-.|.|-+.|+..|.-|
T Consensus 198 ~~l~~aie~Y~~f~~~~~~~~~~~~Lp~L~~v~~~gn~tvye 239 (507)
T PF05600_consen 198 SDLQEAIEYYQAFVEFVHDESESEVLPLLRFVQEHGNTTVYE 239 (507)
T ss_pred HHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHhCCCCcHhH
Confidence 55665554433 2111222233466788888888776654
No 416
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=46.19 E-value=1.7e+02 Score=36.61 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 003431 765 EKQIIREIKQLKQRREQISS 784 (820)
Q Consensus 765 EKKLLKEIKQLKkTREKViA 784 (820)
-+++.+||..+|.+|-+++.
T Consensus 581 ~~kl~~ei~~~k~~kv~l~~ 600 (913)
T KOG0244|consen 581 RAKLLQEIHIAKGQKVQLLR 600 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35677888888887777663
No 417
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=46.16 E-value=2.6e+02 Score=28.49 Aligned_cols=14 Identities=29% Similarity=0.579 Sum_probs=10.9
Q ss_pred cCCChHhHHHHHHh
Q 003431 737 NAISVDDIDGSIRN 750 (820)
Q Consensus 737 NASSeEEIDarIKs 750 (820)
++.+.+-||++|..
T Consensus 138 ~FIT~ENLd~~Iee 151 (170)
T PF14943_consen 138 NFITRENLDAAIEE 151 (170)
T ss_pred CcCCHHhHHHHHHH
Confidence 56788888888864
No 418
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=46.16 E-value=1e+02 Score=25.70 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHHHHH
Q 003431 704 LEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIR 749 (820)
Q Consensus 704 LKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEIDarIK 749 (820)
+..++.+...++..+...+++.+.|+..+.+|++ +++-|++..+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~--~~~~ie~~AR 62 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERLKN--DPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHH
Confidence 3344455555555555556666666666666652 6666655444
No 419
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=45.99 E-value=3.4e+02 Score=28.00 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=7.4
Q ss_pred HhHHHHHHhhhhhhh
Q 003431 742 DDIDGSIRNMEHRIA 756 (820)
Q Consensus 742 EEIDarIKsLEyRIQ 756 (820)
++++..|..-+-+|+
T Consensus 145 ~ea~~~l~~Ae~~I~ 159 (204)
T PRK09174 145 ASLEKKLKEAEARIA 159 (204)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555554443
No 420
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=45.85 E-value=1.9e+02 Score=30.60 Aligned_cols=95 Identities=11% Similarity=0.127 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-h-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRA-S-----------YKEYAEKLEAAISDERSARESLKSKRQEIDSV-QSR 731 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRA-E-----------RsELIeQLKALRaE~RqlR~eldEKRKELdpL-QEa 731 (820)
+...|..++++-.++..+|..+.......+. . -..++.+++.+..++.+.+..+..-...+-.- .+-
T Consensus 116 le~dik~i~k~RKkLe~~RLd~D~~k~r~~ka~k~~~~~~~~~K~~~l~eE~e~ae~k~e~~~e~~~~~M~~~l~~E~e~ 195 (244)
T cd07595 116 LEVEIPNIQKQKKRLSKLVLDMDSARSRYNAAHKSSGGQGAAAKVDALKDEYEEAELKLEQCRDALATDMYEFLAKEAEI 195 (244)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 4456666677767777777777666555432 1 12445555555555555544333222111111 111
Q ss_pred HHHhh-------cC--CChHhHHHHHHhhhhhhhcCC
Q 003431 732 INMMK-------NA--ISVDDIDGSIRNMEHRIAHET 759 (820)
Q Consensus 732 L~KLR-------NA--SSeEEIDarIKsLEyRIQHES 759 (820)
++.|. .+ .+.+.|...+..|+.+|...+
T Consensus 196 ~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~~~~~~~~ 232 (244)
T cd07595 196 ASYLIDLIEAQREYHRTALSVLEAVLPELQEQIEQSP 232 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 11122 11 466777777777776665543
No 421
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=45.68 E-value=78 Score=35.30 Aligned_cols=66 Identities=15% Similarity=0.292 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDD------IQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSV 728 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieE------IKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpL 728 (820)
..|++++..++.++.++++.-..+... -..++.....+...+..+..++++++..+.+-++++..+
T Consensus 337 ~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 337 EELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567777777777777776664333321 123455555666666666666666666666555555554
No 422
>PRK14162 heat shock protein GrpE; Provisional
Probab=45.64 E-value=3.1e+02 Score=28.52 Aligned_cols=48 Identities=8% Similarity=0.280 Sum_probs=30.5
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHH
Q 003431 658 PRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLE 705 (820)
Q Consensus 658 PRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLK 705 (820)
|+-.++.....+..++.+|..+.+....+..++..++++..+|+.+..
T Consensus 30 ~~~~~~~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~ 77 (194)
T PRK14162 30 PKEEDQEKQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYA 77 (194)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777766665555555565556666666655544
No 423
>PRK12704 phosphodiesterase; Provisional
Probab=45.60 E-value=5.6e+02 Score=29.98 Aligned_cols=8 Identities=38% Similarity=0.542 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 003431 667 EQIKAAQS 674 (820)
Q Consensus 667 AKIDeAQk 674 (820)
.++..+++
T Consensus 31 ~~l~~Ae~ 38 (520)
T PRK12704 31 AKIKEAEE 38 (520)
T ss_pred HHHHHHHH
Confidence 33443433
No 424
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=45.54 E-value=7.5e+02 Score=31.43 Aligned_cols=102 Identities=10% Similarity=0.303 Sum_probs=60.8
Q ss_pred EEeccCCCChHHHHHHHHHHHHHHHHhhhHHHH------------------------------HHHHHHHHHhHHHHHHH
Q 003431 654 LVKVPRYDDENLREQIKAAQSKVDEKTRSRDAI------------------------------RDDIQTIRASYKEYAEK 703 (820)
Q Consensus 654 fVRVPRYDDEkLKAKIDeAQkEIqKLNQaR~aI------------------------------ieEIKAKRAERsELIeQ 703 (820)
|.-+|.|....-+..+..++.+-..+.+.-..+ -..+..++.+|.++-..
T Consensus 772 fPeiPLFGrAAREqrLE~L~~eRD~v~EqhA~~sFDvQK~QRlh~~FsqFvg~HLavAF~~dPE~~~~~~~~~Rnei~R~ 851 (1480)
T COG3096 772 FPEIPLFGRAAREQRLESLHAERDVLSERHATLSFDVQKTQRLHQAFSRFIGSHLAVAFEADPEAEIRQLNSRRNELERA 851 (1480)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 577788887777777776666543332221111 23455666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHHHHHhhhhhhh
Q 003431 704 LEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIA 756 (820)
Q Consensus 704 LKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEIDarIKsLEyRIQ 756 (820)
|..-..+..++|..++..++.|..|..-+-.| +..-.|.|-.++..+..++.
T Consensus 852 l~~~~~~~QQ~R~Q~d~aKe~~~~LnkLiPql-~ll~dE~L~dRveE~~E~L~ 903 (1480)
T COG3096 852 LSNHENDNQQQRIQFDQAKEGVTALNRLIPQL-NLLADESLADRVEEIRERLD 903 (1480)
T ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHhhhhh-ccccchhHHHHHHHHHHHHH
Confidence 77777788888887777666554443322222 33455556666666655544
No 425
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.47 E-value=6e+02 Score=30.29 Aligned_cols=30 Identities=7% Similarity=0.209 Sum_probs=17.7
Q ss_pred CChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHH
Q 003431 739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREI 772 (820)
Q Consensus 739 SSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEI 772 (820)
..+|+|..+..-|-.++.-- .|=|.-|.++
T Consensus 411 ~~EE~Lr~Kldtll~~ln~P----nq~k~Rl~~L 440 (508)
T KOG3091|consen 411 PDEEELRAKLDTLLAQLNAP----NQLKARLDEL 440 (508)
T ss_pred ccHHHHHHHHHHHHHHhcCh----HHHHHHHHHH
Confidence 47888887776666655443 4444444333
No 426
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=45.35 E-value=1.6e+02 Score=26.82 Aligned_cols=50 Identities=10% Similarity=0.310 Sum_probs=33.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 687 RDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 687 ieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
.+-+.++|++...+...+..++.+...|...+.....||..+++.+-.|=
T Consensus 3 ~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE 52 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELE 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666667777777777777777777777777664443
No 427
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=45.26 E-value=5.8e+02 Score=30.12 Aligned_cols=145 Identities=13% Similarity=0.184 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 003431 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISV 741 (820)
Q Consensus 662 DEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSe 741 (820)
+..|..|..-++.+++.+...-..--..--..|.+-..|..+.-.|..++|.-.....+.+.|-..-+..|--+.- -+
T Consensus 217 r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~e--Re 294 (502)
T KOG0982|consen 217 RIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKE--RE 294 (502)
T ss_pred hhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH--HH
Q ss_pred HhHHHHHHhhhhhhhcCCCChHHHHHHHHHH-------------------HHHHHHHHHHhhcccchhHHHHhh----hh
Q 003431 742 DDIDGSIRNMEHRIAHETLPLKEEKQIIREI-------------------KQLKQRREQISSSIGEHDEVQLAF----DQ 798 (820)
Q Consensus 742 EEIDarIKsLEyRIQHESLSLkEEKKLLKEI-------------------KQLKkTREKViANAAmQAKIQdSL----DQ 798 (820)
..|. +..|+.|+|. |.+|---|+.. .+|+..|.+++-++..+-.|-+.| ..
T Consensus 295 asle--~Enlqmr~qq----leeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~e 368 (502)
T KOG0982|consen 295 ASLE--KENLQMRDQQ----LEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEE 368 (502)
T ss_pred HHHH--HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hHHHHHHHHHHHHhhc
Q 003431 799 KDQIEEKMKVVLSSMF 814 (820)
Q Consensus 799 KEAIQdQVKlLkKEL~ 814 (820)
|+++|+=+-.+.|+|+
T Consensus 369 keatqELieelrkele 384 (502)
T KOG0982|consen 369 KEATQELIEELRKELE 384 (502)
T ss_pred hHHHHHHHHHHHHHHH
No 428
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=45.09 E-value=2.6e+02 Score=34.90 Aligned_cols=15 Identities=7% Similarity=0.149 Sum_probs=7.7
Q ss_pred HHHHHHHHHhhcccc
Q 003431 803 EEKMKVVLSSMFSSF 817 (820)
Q Consensus 803 QdQVKlLkKEL~s~f 817 (820)
-+++=.++.+||+++
T Consensus 173 ld~I~~~RReLf~~~ 187 (835)
T COG3264 173 LDQILDTRRELLNSL 187 (835)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555666554
No 429
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=45.09 E-value=8.8e+02 Score=32.14 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=17.6
Q ss_pred hhhhhhhhhhhhhhhhhHhhHh
Q 003431 79 ESEKQESLVLVSESCADQENQL 100 (820)
Q Consensus 79 e~~k~~s~~~~~e~~~~~~n~l 100 (820)
|++---.+...+|+|..+-|+|
T Consensus 733 ~~sl~~~k~~~~e~C~~l~~~l 754 (1758)
T KOG0994|consen 733 ESSLSDMKTKSDEVCQNLDNSL 754 (1758)
T ss_pred hhcccccccCcchhhhhhhhhH
Confidence 5666677788889999888887
No 430
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=45.07 E-value=1.7e+02 Score=30.95 Aligned_cols=66 Identities=9% Similarity=0.159 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQS 730 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQE 730 (820)
...++..+...+...++.-..+...|..++.+...|+.+++.+..++++++..-.+-..+|+.+..
T Consensus 38 ~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 38 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777777777777777888888888888888888888888888888777777777776543
No 431
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=45.06 E-value=3.8e+02 Score=27.88 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=40.8
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 003431 660 YDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAI 739 (820)
Q Consensus 660 YDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNAS 739 (820)
.|++.+..++..++.++..+..... ........+..+++.++.+....+..+...+++++..+.-.+ +++.
T Consensus 73 ld~~~~~~~l~~a~a~l~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~--~g~i 143 (334)
T TIGR00998 73 LDPTNAELALAKAEANLAALVRQTK-------QLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFK--KGLI 143 (334)
T ss_pred ECchHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--CCCc
Confidence 4777788888888877665443322 223333344444555555555544444444444444332221 1345
Q ss_pred ChHhHHHH
Q 003431 740 SVDDIDGS 747 (820)
Q Consensus 740 SeEEIDar 747 (820)
|..+++..
T Consensus 144 s~~~~~~a 151 (334)
T TIGR00998 144 SREELDHA 151 (334)
T ss_pred CHHHHHHH
Confidence 66666644
No 432
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=44.84 E-value=2.7e+02 Score=26.08 Aligned_cols=26 Identities=8% Similarity=0.281 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDI 690 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEI 690 (820)
|+..++.+++++.++.+....+..++
T Consensus 6 Lk~~~~~L~~~~~~le~~i~~~~~~~ 31 (171)
T PF03357_consen 6 LKKTIRRLEKQIKRLEKKIKKLEKKA 31 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555544444444333
No 433
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=44.84 E-value=31 Score=37.97 Aligned_cols=127 Identities=13% Similarity=0.313 Sum_probs=0.0
Q ss_pred ccCCCChHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003431 657 VPRYDDENLREQIKAAQSKVD-EKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (820)
Q Consensus 657 VPRYDDEkLKAKIDeAQkEIq-KLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KL 735 (820)
+.+...-.++.....-.+++. ..+.....+...+...+........++..+....+.++.+++.-++........+..+
T Consensus 52 ~Kk~~~~qLrE~~et~~KE~~~~eKe~kE~~~K~~~~~~e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~ 131 (370)
T PF02994_consen 52 FKKDFKNQLREQDETPEKELKNKEKELKENIIKNLEVLKEEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENL 131 (370)
T ss_dssp ------------------------------------------------------------------H-------------
T ss_pred hhhhhHHHHHHhhhhhhhhhhhhhhhhhHhhhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q ss_pred hcCCC---------hHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcc
Q 003431 736 KNAIS---------VDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSI 786 (820)
Q Consensus 736 RNASS---------eEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViANA 786 (820)
.+-.. +++++.+|..||.+++. --..++.+-++|+.|+..-..+...+
T Consensus 132 ~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~---i~~~~~~~~k~i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 132 KKKLENIDESLNSRIDELEERISELEDRIEE---IEQAIKELEKRIKKLEDKLDDLENRS 188 (370)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHhhc
No 434
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=44.74 E-value=3.5e+02 Score=34.24 Aligned_cols=65 Identities=17% Similarity=0.205 Sum_probs=34.5
Q ss_pred HHHHhhhhhhhcCCCChHHHH----HHHHHHHHHHHH------------HHHHhhcccchhHHHHhhhhhHHHHHHHHHH
Q 003431 746 GSIRNMEHRIAHETLPLKEEK----QIIREIKQLKQR------------REQISSSIGEHDEVQLAFDQKDQIEEKMKVV 809 (820)
Q Consensus 746 arIKsLEyRIQHESLSLkEEK----KLLKEIKQLKkT------------REKViANAAmQAKIQdSLDQKEAIQdQVKlL 809 (820)
+.|+.+|--|---+-.|.|=| ++++||.+|++- .=++.....-++|+.+-+.-+++--+++|..
T Consensus 995 Rh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~el~e~efka~d~Sd~r~kie~efAa~eaemdeik~~ 1074 (1424)
T KOG4572|consen 995 RHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGELIEDEFKALDESDPRAKIEDEFAAIEAEMDEIKDG 1074 (1424)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHhhhccccCcchhHHHHHHHHHhhhhhhhhh
Confidence 334444444443333443333 345555555543 2234455566788888888666666666554
Q ss_pred H
Q 003431 810 L 810 (820)
Q Consensus 810 k 810 (820)
+
T Consensus 1075 ~ 1075 (1424)
T KOG4572|consen 1075 K 1075 (1424)
T ss_pred h
Confidence 4
No 435
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=44.63 E-value=2e+02 Score=30.55 Aligned_cols=78 Identities=26% Similarity=0.355 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCC-C
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK--NAI-S 740 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR--NAS-S 740 (820)
.+...|..|-+.+++++. ...|.++|....++-.+|++++...+.++..+......--..|..++.|= +.+ |
T Consensus 13 ~lq~~i~~as~~lNd~TG-----Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs 87 (207)
T PF05546_consen 13 SLQETIFTASQALNDVTG-----YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWS 87 (207)
T ss_pred HHHHHHHHHHHHHHhccC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 466666666666666554 67788888889999999999999999999999888777777777776665 223 7
Q ss_pred hHhHHH
Q 003431 741 VDDIDG 746 (820)
Q Consensus 741 eEEIDa 746 (820)
+.++..
T Consensus 88 ~~DleR 93 (207)
T PF05546_consen 88 PADLER 93 (207)
T ss_pred hHHHHH
Confidence 777774
No 436
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=44.54 E-value=3.2e+02 Score=26.86 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003431 682 SRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESL 718 (820)
Q Consensus 682 aR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~el 718 (820)
++..|...+...+..+.+....+.....+++..+...
T Consensus 48 R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea 84 (173)
T PRK13460 48 RASGVQNDINKASELRLEAEALLKDYEARLNSAKDEA 84 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555544444444444444444444444333
No 437
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=44.52 E-value=1.4e+02 Score=29.36 Aligned_cols=30 Identities=13% Similarity=0.310 Sum_probs=20.2
Q ss_pred HHHHHHHHhh--cCCChHhHHHHHHhhhhhhh
Q 003431 727 SVQSRINMMK--NAISVDDIDGSIRNMEHRIA 756 (820)
Q Consensus 727 pLQEaL~KLR--NASSeEEIDarIKsLEyRIQ 756 (820)
.+..+|++|. +...++.|.++|..|+.+++
T Consensus 95 rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~ 126 (132)
T PF05597_consen 95 RVARALNRLGVPSRKDVEALSARIDQLTAQVE 126 (132)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4667777776 33467777777777776654
No 438
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.22 E-value=5.9e+02 Score=29.88 Aligned_cols=22 Identities=14% Similarity=0.212 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAI 686 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aI 686 (820)
+.+.|.++++.+.+.+..-..+
T Consensus 178 lEe~ieeL~qsl~kd~~~~~~l 199 (446)
T KOG4438|consen 178 LEENIEELNQSLLKDFNQQMSL 199 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666555444433333
No 439
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=44.10 E-value=2.8e+02 Score=26.08 Aligned_cols=36 Identities=17% Similarity=0.364 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHHHHH
Q 003431 714 ARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIR 749 (820)
Q Consensus 714 lR~eldEKRKELdpLQEaL~KLRNASSeEEIDarIK 749 (820)
++..+..+.++++.+++.+.+.+.-.|.++...+-+
T Consensus 48 ~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~ 83 (158)
T PF03938_consen 48 LQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQ 83 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 334444444444444444444433344555444433
No 440
>PRK11519 tyrosine kinase; Provisional
Probab=44.09 E-value=1.9e+02 Score=34.30 Aligned_cols=43 Identities=9% Similarity=0.252 Sum_probs=22.2
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHH
Q 003431 660 YDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAE 702 (820)
Q Consensus 660 YDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIe 702 (820)
|-+..+..|.+.+++-+.-+++.-..+..++......+..|+.
T Consensus 253 Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~ 295 (719)
T PRK11519 253 YLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQ 295 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666555555555555444455555554444444433
No 441
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=44.04 E-value=6.1e+02 Score=31.25 Aligned_cols=110 Identities=14% Similarity=0.259 Sum_probs=53.0
Q ss_pred CChHHHHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHHHHHH
Q 003431 661 DDENLREQIKAAQS---KVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSAR----ESL---KSKRQEIDSVQS 730 (820)
Q Consensus 661 DDEkLKAKIDeAQk---EIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR----~el---dEKRKELdpLQE 730 (820)
.++....+|++... +|+++.+.=..+..++..+-+-..++++++--|..|.+..- ..+ ..-.+..+.|.+
T Consensus 424 ~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ 503 (698)
T KOG0978|consen 424 ALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLRE 503 (698)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444454444433 33333333336677777777666666666655555444222 111 112333344444
Q ss_pred HHHHhhc-----CCChHhHHHHHHhhhhhhh---cCCCChHHHHHHHH
Q 003431 731 RINMMKN-----AISVDDIDGSIRNMEHRIA---HETLPLKEEKQIIR 770 (820)
Q Consensus 731 aL~KLRN-----ASSeEEIDarIKsLEyRIQ---HESLSLkEEKKLLK 770 (820)
.+..|.. ..+++-+..+|..||.++- ...=.|..|...+.
T Consensus 504 ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~ 551 (698)
T KOG0978|consen 504 EKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLT 551 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHH
Confidence 4444430 1466667777777776543 22234444444443
No 442
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=44.04 E-value=4.5e+02 Score=28.46 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhh
Q 003431 671 AAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKS-----KRQEIDSVQSRINMMK 736 (820)
Q Consensus 671 eAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldE-----KRKELdpLQEaL~KLR 736 (820)
...+++++|+..-.-|...+.....+.+.+..+++.++..+.+...-+.. +.+=++-||..|.++.
T Consensus 40 l~nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~ 110 (230)
T PF03904_consen 40 LENEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVD 110 (230)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34446666665555566666666666666666666666555543322222 2223445555555553
No 443
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=43.89 E-value=5.3e+02 Score=30.81 Aligned_cols=43 Identities=14% Similarity=0.288 Sum_probs=27.3
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHH
Q 003431 660 YDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAE 702 (820)
Q Consensus 660 YDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIe 702 (820)
|-+..+..|.+.+++-++-+.+.-..+..++......+..|+.
T Consensus 253 Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~ 295 (726)
T PRK09841 253 YLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQ 295 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777776666666655566666655555555544
No 444
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=43.75 E-value=1.6e+02 Score=28.74 Aligned_cols=52 Identities=8% Similarity=0.222 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 685 AIRDDIQTIRASYKEYAEKLE---AAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 685 aIieEIKAKRAERsELIeQLK---ALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
.|..+..++-+++++.-..+. ....++++.-+.+.+.+++++.|...|.+++
T Consensus 46 ~Va~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~~ 100 (131)
T PF10158_consen 46 AVAFDQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRCQ 100 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444344443333322 2223333444555566677777777776666
No 445
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=43.56 E-value=3.4e+02 Score=26.90 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHh
Q 003431 763 KEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSS 812 (820)
Q Consensus 763 kEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKE 812 (820)
.+.++.=+||++|++.-++ .-.+.++++.|.+.+.+|
T Consensus 154 ~~~~~~~~ei~~lk~el~~-------------~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEK-------------KEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhhhhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhh
Confidence 4556666777777776443 223344777777776665
No 446
>PRK11820 hypothetical protein; Provisional
Probab=43.43 E-value=1.9e+02 Score=31.40 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=33.1
Q ss_pred CCCChHHH-HHHHHHHHHHHHHhhhHHHHHHHHHH----HHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 003431 659 RYDDENLR-EQIKAAQSKVDEKTRSRDAIRDDIQT----IRASYKEYAEKLEAAISDE-RSARESLKSKRQEI 725 (820)
Q Consensus 659 RYDDEkLK-AKIDeAQkEIqKLNQaR~aIieEIKA----KRAERsELIeQLKALRaE~-RqlR~eldEKRKEL 725 (820)
..+.+.++ .-...++..+..+++.|..=-+.+++ .-.....+..+++....+. ..||..+.++.+++
T Consensus 121 ~~~~~~~~~~l~~al~~AL~~l~~~R~~EG~~L~~dl~~rl~~i~~~~~~i~~~~p~~~~~~~~rL~~rl~el 193 (288)
T PRK11820 121 EEDLEALWAALLAALDEALDDLIEMREREGAALKADLLQRLDAIEALVAKIEALAPEILEEYRERLRERLEEL 193 (288)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 33444444 45556677777788777654333333 2233333333333333222 24555566666655
No 447
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=43.41 E-value=4.5e+02 Score=28.26 Aligned_cols=18 Identities=22% Similarity=0.612 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 003431 766 KQIIREIKQLKQRREQIS 783 (820)
Q Consensus 766 KKLLKEIKQLKkTREKVi 783 (820)
+.+|.++..|++.|..++
T Consensus 196 r~~l~~l~~lk~eR~~~~ 213 (342)
T cd08915 196 RPLLNEVSELEKERERFI 213 (342)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666677777776554
No 448
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=43.34 E-value=5.1e+02 Score=31.45 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=13.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 695 ASYKEYAEKLEAAISDERSARESLKSK 721 (820)
Q Consensus 695 AERsELIeQLKALRaE~RqlR~eldEK 721 (820)
.++..|..+.+-|..+.+.+|.++.++
T Consensus 242 ~r~~~L~~k~~~L~~e~~~LK~ELied 268 (683)
T PF08580_consen 242 DRYERLEKKWKKLEKEAESLKKELIED 268 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 444444455555555555555444443
No 449
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=43.31 E-value=1.9e+02 Score=31.72 Aligned_cols=41 Identities=10% Similarity=0.239 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhh
Q 003431 696 SYKEYAEKLEAAISDERSAR--------------ESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 696 ERsELIeQLKALRaE~RqlR--------------~eldEKRKELdpLQEaL~KLR 736 (820)
..+-+..+|+.||-+.|.++ .++.+-.++...|+..|+.||
T Consensus 187 qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~ 241 (289)
T COG4985 187 QVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDALR 241 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555666655555443 233333445555555555555
No 450
>PRK07248 hypothetical protein; Provisional
Probab=43.11 E-value=2.4e+02 Score=24.95 Aligned_cols=34 Identities=15% Similarity=0.307 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS 696 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAE 696 (820)
.+++.+|++++.+|-+|-..|..+..++...|..
T Consensus 4 ~~lR~~ID~iD~~i~~Ll~~R~~l~~~I~~~K~~ 37 (87)
T PRK07248 4 EEIRQEIDQIDDQLVALLEKRMALVEQVVAYKKA 37 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999988887766643
No 451
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=42.91 E-value=2.5e+02 Score=33.80 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=25.5
Q ss_pred CcchhhhccccCCCCcceeeccccccccccccccc
Q 003431 386 RTEPEVLQGGIDGVDERSISVDNAAVESCTSESVY 420 (820)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~s~~~~~~e~~~~~~~~ 420 (820)
++.-+|++++-.|-.-|-+-+-|---++--|-+||
T Consensus 179 ~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF 213 (607)
T KOG0240|consen 179 SSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIF 213 (607)
T ss_pred cCHHHHHHHHhcccccchhhhccccccccccceEE
Confidence 34557778777787777777777777777777765
No 452
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=42.65 E-value=2.1e+02 Score=28.86 Aligned_cols=107 Identities=9% Similarity=0.136 Sum_probs=0.0
Q ss_pred ceeEEeccCCC--ChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 003431 651 FYFLVKVPRYD--DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISD-ERSARESLKSKRQEIDS 727 (820)
Q Consensus 651 FYYfVRVPRYD--DEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE-~RqlR~eldEKRKELdp 727 (820)
+|||++.--|. ..-+..+-+..+..|..-.+.|.+.-......+..+.+-+.+...++.+ ...+......+++.++.
T Consensus 23 Ly~ll~kf~~ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea 102 (155)
T PRK06569 23 LYIFVYKFITPKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQ 102 (155)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhcCCChHhHHHHHHhhhhhhhcCCCChHHHHHHHH
Q 003431 728 VQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIR 770 (820)
Q Consensus 728 LQEaL~KLRNASSeEEIDarIKsLEyRIQHESLSLkEEKKLLK 770 (820)
-...+ |+..|+.+.-... .+...-+-.+|+
T Consensus 103 ~L~~~-----------~~~~~~~~~~~~~--~~~~~~~~~~i~ 132 (155)
T PRK06569 103 DLKNS-----------INQNIEDINLAAK--QFRTNKSEAIIK 132 (155)
T ss_pred HHHHH-----------HHHHHHHHHHHHH--HHHHhHHHHHHH
No 453
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=42.47 E-value=2.2e+02 Score=29.24 Aligned_cols=66 Identities=11% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDA----IRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQS 730 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~a----IieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQE 730 (820)
+.+.+..+.++|+.+|..|.. ...+++.+..+-.++..+.-.+.....+++..+.+.+.+...+++
T Consensus 148 le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 148 LEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 454
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=42.43 E-value=6.9e+02 Score=30.15 Aligned_cols=17 Identities=6% Similarity=0.284 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhhcC
Q 003431 722 RQEIDSVQSRINMMKNA 738 (820)
Q Consensus 722 RKELdpLQEaL~KLRNA 738 (820)
...+..-++.|++||+|
T Consensus 288 m~~~~EaeeELk~lrs~ 304 (596)
T KOG4360|consen 288 MQMLHEAEEELKCLRSC 304 (596)
T ss_pred HHHHHHHHHHHHhhccC
Confidence 33444556678888854
No 455
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=42.30 E-value=3.2e+02 Score=26.27 Aligned_cols=65 Identities=9% Similarity=0.226 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSV 728 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpL 728 (820)
+|+++...|.+.+-.-.+.-..+...++.+-+.++-+..++++|.=.+.++-..+..-..||+..
T Consensus 9 KLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 9 KLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57777777777777666666677777777777777777777777777777766666666666533
No 456
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=41.96 E-value=59 Score=28.06 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS 696 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAE 696 (820)
+.++.+|++++.+|-.+-..|..+..++-+.|..
T Consensus 2 ~~lR~~ID~iD~~iv~Ll~~R~~~~~~i~~~K~~ 35 (76)
T TIGR01807 2 EELRNKIDAIDDRILDLLSERATYAQAVGELKGS 35 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999998888776654
No 457
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=41.96 E-value=1.7e+02 Score=26.95 Aligned_cols=16 Identities=13% Similarity=0.391 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 003431 697 YKEYAEKLEAAISDER 712 (820)
Q Consensus 697 RsELIeQLKALRaE~R 712 (820)
...++.+++.+..++.
T Consensus 12 ~q~~q~~~~~l~~q~~ 27 (110)
T TIGR02338 12 LQQLQQQLQAVATQKQ 27 (110)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444443333
No 458
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=41.81 E-value=5.7e+02 Score=29.04 Aligned_cols=95 Identities=19% Similarity=0.336 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChHhHHHHHHhhhhhhhc-CCCChH---HHHHHHH-HHHHHHHHHHHH
Q 003431 709 SDERSARESLKSKRQEIDSVQSRINMMK-NAISVDDIDGSIRNMEHRIAH-ETLPLK---EEKQIIR-EIKQLKQRREQI 782 (820)
Q Consensus 709 aE~RqlR~eldEKRKELdpLQEaL~KLR-NASSeEEIDarIKsLEyRIQH-ESLSLk---EEKKLLK-EIKQLKkTREKV 782 (820)
+--+-|+..+.+-.+|.+.|--.|.+.+ .|.-+. --++ =||+=.. ..||.+ ||.++|| ||+||+-..-..
T Consensus 59 NavrdYqrq~~elneEkrtLeRELARaKV~aNRVA---~vvA-NEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAia 134 (351)
T PF07058_consen 59 NAVRDYQRQVQELNEEKRTLERELARAKVSANRVA---TVVA-NEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIA 134 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh---hhhc-ccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555556666666666655 221111 1122 2666553 357764 7888886 899887763322
Q ss_pred hhcccchhHHHHhhhhhHHHHHHHHHHHHhh
Q 003431 783 SSSIGEHDEVQLAFDQKDQIEEKMKVVLSSM 813 (820)
Q Consensus 783 iANAAmQAKIQdSLDQKEAIQdQVKlLkKEL 813 (820)
. .+-+++.| -||.+|=++|.|---|
T Consensus 135 E--RtAkaEaQ----LkeK~klRLK~LEe~L 159 (351)
T PF07058_consen 135 E--RTAKAEAQ----LKEKLKLRLKVLEEGL 159 (351)
T ss_pred H--HHHHHHHH----HHHHHHHHHHHHHhhc
Confidence 2 23333332 2556667777766555
No 459
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=41.65 E-value=4.8e+02 Score=28.08 Aligned_cols=64 Identities=16% Similarity=0.177 Sum_probs=31.4
Q ss_pred CceeEEeccCCCChHHHHHHHHHH-----HHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003431 650 PFYFLVKVPRYDDENLREQIKAAQ-----SKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARE 716 (820)
Q Consensus 650 sFYYfVRVPRYDDEkLKAKIDeAQ-----kEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~ 716 (820)
+.+.-|++..+| |+.-++|-.+- .-|+.+ .+......+.=++.+..++..+++.+..++..||.
T Consensus 130 s~ii~I~~~~~d-P~~A~~ian~l~~~~~~~i~~~--~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~ 198 (362)
T TIGR01010 130 SGILTLNVTAFD-AEEAQKINQRLLKEGERLINRL--NERARKDTIAFAENEVKEAEQRLNATKAELLKYQI 198 (362)
T ss_pred CCeEEEEEEecC-HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666665 44444443332 333332 11223334444555566666666666666666653
No 460
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=41.61 E-value=2.5e+02 Score=24.88 Aligned_cols=27 Identities=22% Similarity=0.679 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccch
Q 003431 763 KEEKQIIREIKQLKQRREQISSSIGEH 789 (820)
Q Consensus 763 kEEKKLLKEIKQLKkTREKViANAAmQ 789 (820)
.++..++.+|.+|++.|.++....+..
T Consensus 44 ~~k~~l~~~l~~le~~r~~~~~~~~~~ 70 (143)
T PF05130_consen 44 EEKQELLEELRELEKQRQQLLAKLGAE 70 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 345677888888888888887766533
No 461
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=41.58 E-value=4.4e+02 Score=27.67 Aligned_cols=41 Identities=12% Similarity=0.284 Sum_probs=18.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003431 675 KVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSAR 715 (820)
Q Consensus 675 EIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR 715 (820)
+|.++...|+++.+.+.++..-..+|..++.-++.-...|+
T Consensus 70 ~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k 110 (207)
T PF05010_consen 70 EIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYK 110 (207)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444443
No 462
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=41.56 E-value=70 Score=28.57 Aligned_cols=42 Identities=19% Similarity=0.359 Sum_probs=29.4
Q ss_pred ccCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHH
Q 003431 657 VPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYK 698 (820)
Q Consensus 657 VPRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERs 698 (820)
.|+++.+....++..|+++|+.+++.+..+..+++..++++.
T Consensus 60 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 60 LPEPEKESDSPELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred cCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666778888888888887777777777666665543
No 463
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=41.49 E-value=5.4e+02 Score=28.66 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 003431 666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRAS 696 (820)
Q Consensus 666 KAKIDeAQkEIqKLNQaR~aIieEIKAKRAE 696 (820)
..-|..|++++..-.+.|..|..-+......
T Consensus 207 ~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~d 237 (384)
T PF03148_consen 207 NENIQRAEKERQSSAQLREDIDSILEQTAND 237 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888777777776665554433
No 464
>PRK14011 prefoldin subunit alpha; Provisional
Probab=41.48 E-value=3.7e+02 Score=26.72 Aligned_cols=28 Identities=11% Similarity=0.241 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 003431 666 REQIKAAQSKVDEKTRSRDAIRDDIQTI 693 (820)
Q Consensus 666 KAKIDeAQkEIqKLNQaR~aIieEIKAK 693 (820)
.++|..++..|..++..+..+...+.++
T Consensus 16 ~~qie~L~~si~~L~~a~~e~~~~ie~L 43 (144)
T PRK14011 16 NQQVQKLQEELSSIDMMKMELLKSIESM 43 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 465
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.46 E-value=5.2e+02 Score=31.54 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=27.4
Q ss_pred CChHhHHHHHHhhhhhhhc--CCCChHHHHHHHHHHHHHHHHHHHH
Q 003431 739 ISVDDIDGSIRNMEHRIAH--ETLPLKEEKQIIREIKQLKQRREQI 782 (820)
Q Consensus 739 SSeEEIDarIKsLEyRIQH--ESLSLkEEKKLLKEIKQLKkTREKV 782 (820)
.|.|-|--...+|...+.| +++.-.-|++|-.+-..|.+.....
T Consensus 166 ~sLERiAlelnqlkf~a~h~k~~l~p~~e~ria~~~~~L~qsl~~l 211 (705)
T KOG2307|consen 166 TSLERIALELNQLKFHASHLKGSLFPHSEERIAAEKIILSQSLAVL 211 (705)
T ss_pred chHHHHHHHHHHHHHHHHHhhcccCcchhhHHhhHHHHHHHHHHHH
Confidence 5666666666677666655 3455566777766666666664443
No 466
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=41.33 E-value=2.9e+02 Score=25.52 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHhhhHH
Q 003431 665 LREQIKAAQSKVDEKTRSRD 684 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~ 684 (820)
+.+.+..++.+|+.+.+.+.
T Consensus 4 l~~~~~~l~~~i~~l~~~~~ 23 (129)
T cd00584 4 LAAQLQVLQQEIEELQQELA 23 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333
No 467
>TIGR01791 CM_archaeal chorismate mutase, archaeal type. This model represents a clade of archaeal chorismate mutases. Chorismate mutase catalyzes the conversion of chorismate into prephenate which is subsequently converted into either phenylalanine or tyrosine. In Sulfolobus this gene is found as a fusion with prephenate dehydrogenase (although the non-TIGR annotation contains a typographical error indicating it as a dehydratase) which is the next enzyme in the tyrosine biosynthesis pathway. The Archaeoglobus gene contains an N-terminal prephenate dehydrogenase domain and a C-terminal prephenate dehydratase domain followed by a regulatory amino acid-binding ACT domain. The Thermoplasma volcanium gene is adjacent to prephenate dehydratase.
Probab=41.31 E-value=2.4e+02 Score=24.55 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS 696 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAE 696 (820)
+.+..+|+.++.+|-+|-..|..+..++...|..
T Consensus 2 ~~lR~~Id~iD~~i~~Ll~~R~~l~~~i~~~K~~ 35 (83)
T TIGR01791 2 EELRQEIEEIDKSILDLIEKRIKIARKIGEIKHN 35 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999888777754
No 468
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=41.31 E-value=4.6e+02 Score=27.78 Aligned_cols=23 Identities=13% Similarity=0.055 Sum_probs=10.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Q 003431 693 IRASYKEYAEKLEAAISDERSAR 715 (820)
Q Consensus 693 KRAERsELIeQLKALRaE~RqlR 715 (820)
++.+...-...++.+|..++.++
T Consensus 72 l~~~l~~a~~~~~~~R~~L~~~~ 94 (291)
T PF10475_consen 72 LQDELEEALVICKNLRRNLKSAD 94 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555554444
No 469
>PRK07857 hypothetical protein; Provisional
Probab=41.01 E-value=68 Score=30.62 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhH
Q 003431 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASY 697 (820)
Q Consensus 661 DDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAER 697 (820)
+-..++.+|++++.+|-++-..|..+..++.+.|.+-
T Consensus 29 ~L~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K~~~ 65 (106)
T PRK07857 29 EIDELREEIDRLDAEILALVKRRTEVSQAIGKARMAS 65 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4577999999999999999999999998888877543
No 470
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.99 E-value=8.5e+02 Score=30.93 Aligned_cols=22 Identities=5% Similarity=0.031 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003431 700 YAEKLEAAISDERSARESLKSK 721 (820)
Q Consensus 700 LIeQLKALRaE~RqlR~eldEK 721 (820)
+..+.++|..+++++..++...
T Consensus 676 lkQ~~~~l~~e~eeL~~~vq~~ 697 (970)
T KOG0946|consen 676 LKQMEKELQVENEELEEEVQDF 697 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333
No 471
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=40.88 E-value=2.4e+02 Score=27.64 Aligned_cols=35 Identities=0% Similarity=0.145 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 702 EKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 702 eQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
.++.+++.+...-+..+.++++.+..-.+.+..|-
T Consensus 56 ~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~~L~ 90 (131)
T PF11068_consen 56 QQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQKLE 90 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34445555555555555555555444444444443
No 472
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=40.77 E-value=2.6e+02 Score=24.71 Aligned_cols=28 Identities=4% Similarity=0.213 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDI 690 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEI 690 (820)
+.+..+++.+...|..++..-..|....
T Consensus 4 ~~F~~~v~~I~~~I~~i~~~v~~l~~l~ 31 (117)
T smart00503 4 DEFFEKVEEIRANIQKISQNVAELQKLH 31 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666655444443333
No 473
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=40.74 E-value=4.7e+02 Score=27.77 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 003431 664 NLREQIKAAQSKV 676 (820)
Q Consensus 664 kLKAKIDeAQkEI 676 (820)
.+...|-.+++.+
T Consensus 187 ~~~~~ilq~d~~L 199 (297)
T PF02841_consen 187 SMENSILQADQQL 199 (297)
T ss_dssp HHHHHHHHH-TTS
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 474
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=40.68 E-value=4.3e+02 Score=27.23 Aligned_cols=95 Identities=14% Similarity=0.148 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 003431 711 ERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHD 790 (820)
Q Consensus 711 ~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViANAAmQA 790 (820)
....|..+..+=++++.+++.+.+.++-.+..++++.=..|.-..+. .-+-+.....-|.+|...|.+-..-+.
T Consensus 122 l~KaKk~Y~~~C~e~e~a~~~~~~~~~~~~~ke~eK~~~K~~k~~~~---~~~a~~~Y~~~v~~l~~~~~~~~~~~~--- 195 (239)
T cd07647 122 TMKAKKSYEQKCREKDKAEQAYEKSSSGAQPKEAEKLKKKAAQCKTS---AEEADSAYKSSIGCLEDARVEWESEHA--- 195 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 33344444444455555555554444323444444322222211111 011223344445556666554222211
Q ss_pred HHHHhhhhh-HHHHHHHHHHHHhhc
Q 003431 791 EVQLAFDQK-DQIEEKMKVVLSSMF 814 (820)
Q Consensus 791 KIQdSLDQK-EAIQdQVKlLkKEL~ 814 (820)
.+++.- +--++|+..|+-.|+
T Consensus 196 ---~~~~~~Q~lEe~Ri~~lk~~l~ 217 (239)
T cd07647 196 ---TACQVFQNMEEERIKFLRNALW 217 (239)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHH
Confidence 222221 233567777776664
No 475
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=40.62 E-value=4.4e+02 Score=32.95 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHhhcccc
Q 003431 765 EKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSSMFSSF 817 (820)
Q Consensus 765 EKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKEL~s~f 817 (820)
|||-=++|..+++.-+.=..+.++|-++.+--+ .-+.|+++|..+|+.-.+.
T Consensus 847 ErqQkq~iE~~Eq~h~~rlR~eakRir~EQekd-~~~Fqe~LK~~kKe~k~e~ 898 (1187)
T KOG0579|consen 847 ERQQKQEIEDTEQAHEHRLRNEAKRIRIEQEKD-MRAFQERLKQEKKEFKQEL 898 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 344445666666666666666666655543222 2366677776666655443
No 476
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=40.61 E-value=2.3e+02 Score=25.61 Aligned_cols=64 Identities=14% Similarity=0.426 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh----cCCChHhHHHHHHhhhhhhhcCCCChH--HHHHHHHHHHHHHHH
Q 003431 711 ERSARESLKSKRQEIDSVQSRINMMK----NAISVDDIDGSIRNMEHRIAHETLPLK--EEKQIIREIKQLKQR 778 (820)
Q Consensus 711 ~RqlR~eldEKRKELdpLQEaL~KLR----NASSeEEIDarIKsLEyRIQHESLSLk--EEKKLLKEIKQLKkT 778 (820)
...++..+..-+.+++.|+..++.|. ...|..||. .||.+++++---.. -.+.++.+|..|++.
T Consensus 14 ~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~----~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~k 83 (100)
T PF01486_consen 14 HEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQ----QLEQQLESALKRVRSRKDQLLMEQIEELKKK 83 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHH----HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666777777777776666 235777776 55666665543333 344567788877764
No 477
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=40.60 E-value=3e+02 Score=27.97 Aligned_cols=20 Identities=5% Similarity=0.202 Sum_probs=7.5
Q ss_pred HHHHHhHHHHHHHHHHHHHH
Q 003431 691 QTIRASYKEYAEKLEAAISD 710 (820)
Q Consensus 691 KAKRAERsELIeQLKALRaE 710 (820)
..++.++..|..++..++.+
T Consensus 130 ~~L~~e~~~L~~~~~~l~~~ 149 (189)
T PF10211_consen 130 EELEEEKEELEKQVQELKNK 149 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 478
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=40.56 E-value=1.9e+02 Score=34.44 Aligned_cols=114 Identities=18% Similarity=0.300 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 003431 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIR---ASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNA 738 (820)
Q Consensus 662 DEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKR---AERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNA 738 (820)
|+.+..-...+......+-....++...+...- .++.++-++|..|+.-.|.|...++.-..-.+.++..|..|.+.
T Consensus 261 d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~ 340 (557)
T COG0497 261 DGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNS 340 (557)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhh
Q ss_pred -CChHhHHHHHHhhhhhhhcCCCChHH---------HHHHHHHHHHH
Q 003431 739 -ISVDDIDGSIRNMEHRIAHETLPLKE---------EKQIIREIKQL 775 (820)
Q Consensus 739 -SSeEEIDarIKsLEyRIQHESLSLkE---------EKKLLKEIKQL 775 (820)
.+.+.|.+.++.|...+.+-.-.|.. ||.|.+|+++|
T Consensus 341 ~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v~~eL~~L 387 (557)
T COG0497 341 EESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEVTAELKAL 387 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 479
>PRK14011 prefoldin subunit alpha; Provisional
Probab=40.39 E-value=1.7e+02 Score=28.90 Aligned_cols=50 Identities=18% Similarity=0.302 Sum_probs=33.1
Q ss_pred cCceeEEeccCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHH
Q 003431 649 QPFYFLVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLE 705 (820)
Q Consensus 649 hsFYYfVRVPRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLK 705 (820)
-+=||+.| .+..-|+-++..|+.+.+.+..|...++++.....++...|+
T Consensus 77 GtGy~VEk-------~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~ 126 (144)
T PRK14011 77 GSDIYLEK-------DVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELE 126 (144)
T ss_pred cCCeEEEe-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666 355666677777777777777777777777776666665544
No 480
>PRK00846 hypothetical protein; Provisional
Probab=40.28 E-value=1.7e+02 Score=26.73 Aligned_cols=51 Identities=12% Similarity=0.220 Sum_probs=24.0
Q ss_pred ChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003431 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDER 712 (820)
Q Consensus 662 DEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~R 712 (820)
|..+.++|.+|+-.+-..-..-..++..+-........|..+|+.|+.+++
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~ 58 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 58 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666555444333333444444444444444444444443333
No 481
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=40.23 E-value=5e+02 Score=27.85 Aligned_cols=87 Identities=10% Similarity=0.110 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhcCCChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHH
Q 003431 699 EYAEKLEAAISDERSAR---ESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQL 775 (820)
Q Consensus 699 ELIeQLKALRaE~RqlR---~eldEKRKELdpLQEaL~KLRNASSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQL 775 (820)
.|-..|+.+..-...+| ..+..++.+++.+.+.+.+.|. --+.+...|..||.+++..+-. |=.|+.+.
T Consensus 136 ~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~--dr~~~~~ev~~~e~kve~a~~~------~k~e~~Rf 207 (243)
T cd07666 136 QLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANKKA--DRDLLKEEIEKLEDKVECANNA------LKADWERW 207 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 33344443333333333 3445577788888888888763 2368999999999999998443 44677777
Q ss_pred HHHHHH-----HhhcccchhHHH
Q 003431 776 KQRREQ-----ISSSIGEHDEVQ 793 (820)
Q Consensus 776 KkTREK-----ViANAAmQAKIQ 793 (820)
+.+|.. ++.|+-++.+.+
T Consensus 208 ~~~k~~D~k~~~~~yae~~i~~~ 230 (243)
T cd07666 208 KQNMQTDLRSAFTDMAENNISYY 230 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 766543 555555554443
No 482
>TIGR01803 CM-like chorismate mutase related enzymes. This subfamily includes two enzymes which are variants on the mechanism of chorismate mutase and are likely to have evolved from an ancestral chorismate mutase enzyme. 4-amino-4-deoxy-chorismate mutase produces amino-deoxy-prephenate which is subsequently converted to para-dimethylamino-phenylalanine, a component of the natural product pristinamycin. Isochorismate-pyruvate lyase presumably catalyzes the same type of 2+2+2 cyclo-rearrangement as chorismate mutase, but acting on isochorismate, this results in two broken bonds instead of one broken and one made. The product of this reaction is salicylate (2-hydroxy-benzoate) which is also incorporated into various natural products.
Probab=40.21 E-value=1.5e+02 Score=26.02 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS 696 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAE 696 (820)
..++++|++++.+|-+|-..|..+..++...|..
T Consensus 2 ~~lR~~ID~ID~~lv~Ll~~R~~~~~~ia~~K~~ 35 (82)
T TIGR01803 2 ADIREAIDRIDLALVQALGRRMDYVKRASEFKRS 35 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4689999999999999999999998888776643
No 483
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=40.19 E-value=3.3e+02 Score=32.46 Aligned_cols=68 Identities=7% Similarity=0.152 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 666 KAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
+.++..++++|..+.+.-.....+. |..-+.+.+.+..+.++...+...+.+.+.....|++.+..|.
T Consensus 345 ~q~~~~~~~~l~~~~~~~~~~~~e~---~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~ 412 (656)
T PRK06975 345 NRKVDRLDQELVQRQQANDAQTAEL---RVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLS 412 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666665555444333333 2223334444455555555555555555555556666554443
No 484
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=40.07 E-value=4e+02 Score=31.19 Aligned_cols=95 Identities=15% Similarity=0.324 Sum_probs=51.0
Q ss_pred ChHHHHHHHHHHH----HHHHHhhhHHHH--------HHHHHHHH-Hh---------------------HHHHHHHHHHH
Q 003431 662 DENLREQIKAAQS----KVDEKTRSRDAI--------RDDIQTIR-AS---------------------YKEYAEKLEAA 707 (820)
Q Consensus 662 DEkLKAKIDeAQk----EIqKLNQaR~aI--------ieEIKAKR-AE---------------------RsELIeQLKAL 707 (820)
.+.+.++|.+++. +++++.+.++-+ +.+|.++| +- |+.|.+.+.++
T Consensus 347 EetHQkkiEdLQRqHqRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsv 426 (593)
T KOG4807|consen 347 EETHQKKIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSV 426 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHH
Confidence 7789999999876 566776666544 33444443 22 33344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HhhcC-CChHhHHHHHHhhhhhhh
Q 003431 708 ISDERSARESLKSKRQEIDSVQSRIN----MMKNA-ISVDDIDGSIRNMEHRIA 756 (820)
Q Consensus 708 RaE~RqlR~eldEKRKELdpLQEaL~----KLRNA-SSeEEIDarIKsLEyRIQ 756 (820)
.-++.-+-..+.+|==|...|-+++. -||.| .--.||++.=+.|+.|+.
T Consensus 427 qRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLa 480 (593)
T KOG4807|consen 427 QRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLA 480 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHH
Confidence 44444444445555444444444432 24433 334566666666666553
No 485
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=39.98 E-value=5.2e+02 Score=28.06 Aligned_cols=18 Identities=11% Similarity=0.418 Sum_probs=12.0
Q ss_pred ChHHHHHHHHHHHHHHHH
Q 003431 761 PLKEEKQIIREIKQLKQR 778 (820)
Q Consensus 761 SLkEEKKLLKEIKQLKkT 778 (820)
++..-..||++|..+-+.
T Consensus 256 ~~~~Q~~ll~~i~~an~~ 273 (337)
T cd09234 256 NLAAQENILKALTEANAK 273 (337)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566677777777765554
No 486
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=39.96 E-value=2.6e+02 Score=24.56 Aligned_cols=53 Identities=13% Similarity=0.295 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 684 DAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 684 ~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
..+..-++..+.+...+..+...+..+-+.+....+.|.+.++++-++.+.+-
T Consensus 29 ~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g 81 (90)
T PF06103_consen 29 DEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLG 81 (90)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33444455555666666666666666667777777778887777777776554
No 487
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=39.94 E-value=2e+02 Score=30.55 Aligned_cols=37 Identities=16% Similarity=0.345 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 700 YAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 700 LIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
|.++...+.++...++++++++.++++.++..-..|+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~ 185 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALK 185 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555556666666666666666665555444444
No 488
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=39.93 E-value=3.3e+02 Score=32.38 Aligned_cols=67 Identities=21% Similarity=0.281 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 670 KAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 670 DeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
.....+|.+|...+.....+......++..|..+|+....+++.+...+.+....+..||+.|.--|
T Consensus 416 ~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr 482 (518)
T PF10212_consen 416 SYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTR 482 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888778888888888999999999999988888888888888888888888887666
No 489
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=39.87 E-value=1.3e+02 Score=32.49 Aligned_cols=60 Identities=17% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003431 676 VDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (820)
Q Consensus 676 IqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KL 735 (820)
|.+|+++|..+..+++++........++++++..+.+.++..++.-.++.+.++..++.+
T Consensus 1 l~el~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 60 (378)
T TIGR01554 1 LSELKEQREEIVAEIRSLLDKAEKLEKELTAAALEKEELETDVEKLKEEIKLLEDAIADL 60 (378)
T ss_pred ChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes []. Ada3 is an essential component of the Ada transcriptional coactivator (alteration/deficiency in activation) complex. It plays a key role in linking histone acetyltransferase-containing complexes to p53 (tumour suppressor protein) thereby regulating p53 acetylation, stability and transcriptional activation following DNA damage [].
Probab=39.73 E-value=2.6e+02 Score=27.28 Aligned_cols=63 Identities=14% Similarity=0.217 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 661 DDENLREQIKAAQSKVD---EKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQ 723 (820)
Q Consensus 661 DDEkLKAKIDeAQkEIq---KLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRK 723 (820)
+|++|-+.|..+|.++. ..|..|..-...+-..+..+.+|...++.+-.+..++-..+-..+.
T Consensus 34 eDDEI~aeLR~lQ~eLr~~~~~N~~rk~rL~~~~~e~ma~QE~~~~l~~lD~~V~~aY~Kr~~~~~ 99 (131)
T PF10198_consen 34 EDDEISAELRRLQAELREQSAHNNARKKRLLKIAKEEMARQEYKRILDDLDKQVEQAYKKRMRARK 99 (131)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 491
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=39.73 E-value=2.7e+02 Score=26.21 Aligned_cols=72 Identities=14% Similarity=0.285 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAIS-----DERSARESLKSKRQEIDSVQSRINM 734 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRa-----E~RqlR~eldEKRKELdpLQEaL~K 734 (820)
+.+-.........-.++++.+.++..++++++.+...+..+|...+. +.+.....+..+..++...++.+.+
T Consensus 25 ~~v~~~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~ 101 (158)
T PF03938_consen 25 DKVFQESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQAQQ 101 (158)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=39.48 E-value=2.5e+02 Score=28.81 Aligned_cols=66 Identities=8% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 671 AAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 671 eAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
.+.+.+...+..-..+..+.++++.+..+|..+++.|..++..+...+..-.++-+.|...|.+-|
T Consensus 87 ~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RAR 152 (161)
T TIGR02894 87 SFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRAR 152 (161)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PTZ00332 paraflagellar rod protein; Provisional
Probab=39.46 E-value=5.4e+02 Score=30.91 Aligned_cols=115 Identities=11% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cC--
Q 003431 666 REQIKAAQSKVDEKTRSRDA----IRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK-NA-- 738 (820)
Q Consensus 666 KAKIDeAQkEIqKLNQaR~a----IieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR-NA-- 738 (820)
..++++++.+|.-..=.|.- +....+.-+..+++|..+.+.+..++..++...+.-.+.++|.-+.|..-- .+
T Consensus 444 ErRLEeLDRqIR~~hiqrE~amETlDPNAKkyseakkeLl~~r~~Ve~eI~~L~~Kq~~alE~F~pTE~aL~~AGveFVH 523 (589)
T PTZ00332 444 EKRLEEIDRNIRTTHIQLEFCVETFDPNAKKHADMKKELYKLRQGVEEELAMLKEKQAQALEMFKESEEALDAAGIEFVH 523 (589)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhCCCccC
Q ss_pred ----CChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHh
Q 003431 739 ----ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQIS 783 (820)
Q Consensus 739 ----SSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKVi 783 (820)
....-+.++=+.|+||+. |+..||-+|+.+=..|+..|..+.
T Consensus 524 P~eE~~e~nl~RrSK~veYr~~---~~~~EE~ki~~~r~~i~ra~~~~~ 569 (589)
T PTZ00332 524 PVDENNEEVLTRRSKMVEYRSH---LAKQEEVKIAAEREEIKRARLLRS 569 (589)
T ss_pred HHHHHhHHHHHHHHHHHHHHHh---hcchHHHHHHHHHHHHHHHHHHhc
No 494
>PRK06034 hypothetical protein; Provisional
Probab=39.18 E-value=1.6e+02 Score=32.20 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-----------HhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIR-----------ASYKEYAEKLEAAIS---DERSARESLKSKRQEIDSV 728 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKR-----------AERsELIeQLKALRa---E~RqlR~eldEKRKELdpL 728 (820)
.+++.+||+++.+|-+|-.+|..+..++-+.| .+-.++++++..+.. -...++..+.+-......+
T Consensus 12 ~eLR~eID~ID~eLl~LL~eR~~lv~~Va~~K~~~~~~pv~dP~RE~evl~rl~~~~~g~L~~~~ie~Ifr~Iis~Sr~l 91 (279)
T PRK06034 12 AELRWEIDAIDEELHQLLMERGDIIDRLIAVKRTQEVGSAFRPGREADMMRRLVSRHRGILPLDTVESIWRVIIATFTYV 91 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccChHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHh
Q ss_pred H
Q 003431 729 Q 729 (820)
Q Consensus 729 Q 729 (820)
|
T Consensus 92 Q 92 (279)
T PRK06034 92 Q 92 (279)
T ss_pred c
No 495
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=39.04 E-value=3.7e+02 Score=26.05 Aligned_cols=86 Identities=10% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIR----ASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAI 739 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKAKR----AERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNAS 739 (820)
..-.||..+++-+..+.+.-..+...+...| +-|.-+.+..+.-..+...+...+.+|+.|++.|+.....|. .
T Consensus 31 ~F~~ki~~F~~iv~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq~~I~Ek~~eLERl~~E~~sL~--k 108 (120)
T PF14931_consen 31 EFVEKISEFQKIVKGFIEILDELAKRVENEKLKAIGARNLLKSEAKQREAQQQQLQALIAEKKMELERLRSEYESLQ--K 108 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q ss_pred ChHhHHHHHHhh
Q 003431 740 SVDDIDGSIRNM 751 (820)
Q Consensus 740 SeEEIDarIKsL 751 (820)
=+.|-+..|..|
T Consensus 109 ve~eQ~~~i~~~ 120 (120)
T PF14931_consen 109 VEQEQNELIQKL 120 (120)
T ss_pred HHHHHHHHHHhC
No 496
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=39.00 E-value=9.4e+02 Score=30.73 Aligned_cols=145 Identities=11% Similarity=0.177 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVD 742 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeE 742 (820)
++++.++.++.++=..+.++=..|.-.+...+.-..+.-++...|-.+..++......-....+.....+..||.
T Consensus 427 ~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~----- 501 (980)
T KOG0980|consen 427 EKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQ----- 501 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----
Q ss_pred hHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHhhccc
Q 003431 743 DIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSSMFSS 816 (820)
Q Consensus 743 EIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKEL~s~ 816 (820)
|+-....+++....+-+-+....-..+.++..+.+.|....+....|-.=.+. ...+.+..+.+-+|.+.
T Consensus 502 El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e~~~----~~~e~e~si~ql~l~~~ 571 (980)
T KOG0980|consen 502 ELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREEEREA----LRLEAERSINQLELDSS 571 (980)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHhhHHHhhcccc
No 497
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=38.98 E-value=2.8e+02 Score=29.80 Aligned_cols=78 Identities=15% Similarity=0.275 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 659 RYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASY-----------------KEYAEKLEAAISDERSARESLKSK 721 (820)
Q Consensus 659 RYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAER-----------------sELIeQLKALRaE~RqlR~eldEK 721 (820)
..|...+++++..++.++..++.........++..+.+. .+...+++...++.+.++..+...
T Consensus 91 ~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 170 (370)
T PRK11578 91 VIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLDTAATELAVKQAQIGTIDAQIKRN 170 (370)
T ss_pred EECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhh
Q 003431 722 RQEIDSVQSRINMMK 736 (820)
Q Consensus 722 RKELdpLQEaL~KLR 736 (820)
+..++.++..|..++
T Consensus 171 ~~~l~~~~~~l~~~~ 185 (370)
T PRK11578 171 QASLDTAKTNLDYTR 185 (370)
T ss_pred HHHHHHHHHHHhcCE
No 498
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=38.97 E-value=1e+02 Score=26.70 Aligned_cols=46 Identities=13% Similarity=0.214 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAI 708 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALR 708 (820)
.+|+.+|...+.-|+.||+.=..-...|..++..+.-|..+|+.+.
T Consensus 7 ~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 7 EELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 499
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=38.97 E-value=4e+02 Score=29.98 Aligned_cols=109 Identities=12% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHH
Q 003431 672 AQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAI------SDERSARESLKSKRQEIDSVQSRINMMKNAISVDDID 745 (820)
Q Consensus 672 AQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALR------aE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEID 745 (820)
+..-|+.+-.-|..+..+ .++-.+..+..++.-|. ++.+-....++......++-+.-+.+|..
T Consensus 305 ~~eIL~~f~~~R~~~~~k--R~~~~l~kl~~~l~il~gl~~~~~~idfIi~vI~~s~~~~~~k~~L~~~L~~-------- 374 (426)
T PF00521_consen 305 LKEILKEFYEFRLEYYQK--RKQYLLEKLEERLHILEGLIKALNKIDFIIEVIRGSIDKNKAKKDLIEELSE-------- 374 (426)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSHHHHHHHHHHHHCH--------
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccchHHHHHHHhhchH--------
Q ss_pred HHHHhhhhhhhc--CCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 003431 746 GSIRNMEHRIAH--ETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQ 793 (820)
Q Consensus 746 arIKsLEyRIQH--ESLSLkEEKKLLKEIKQLKkTREKViANAAmQAKIQ 793 (820)
.+.+|-+.- .+|+..|-.+|.+|+++|++..+.+....+...++|
T Consensus 375 ---~q~~yLL~m~L~~LT~~e~~kL~~e~~~l~~ei~~l~~~~~~~~~l~ 421 (426)
T PF00521_consen 375 ---EQADYLLSMPLRRLTKEEIEKLQKEIKELEKEIEELEKILPKIKDLW 421 (426)
T ss_dssp ---HHHHHHHTSBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred ---HHHHHHHhchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=38.90 E-value=4.7e+02 Score=27.20 Aligned_cols=151 Identities=13% Similarity=0.200 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhh-
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARE-----SLKSKRQEIDSVQSRINMMK- 736 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~-----eldEKRKELdpLQEaL~KLR- 736 (820)
+.+..+...+......+...-..+...-+.+......++..+..+..+...|.. --..-.+.++..+..|+.||
T Consensus 62 ~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~ 141 (264)
T PF06008_consen 62 ENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRK 141 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHh
Q ss_pred -cC-----CChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHH-------------------HHHHHHHHHHhhcccchhH
Q 003431 737 -NA-----ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREI-------------------KQLKQRREQISSSIGEHDE 791 (820)
Q Consensus 737 -NA-----SSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEI-------------------KQLKkTREKViANAAmQAK 791 (820)
++ .-.+|+.+--.-|.+-..--.-+..+-+-+...| ....++|+.-.-|...+..
T Consensus 142 r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~ 221 (264)
T PF06008_consen 142 RDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKN 221 (264)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhHHHHHHHHHHHHhh
Q 003431 792 VQLAFDQKDQIEEKMKVVLSSM 813 (820)
Q Consensus 792 IQdSLDQKEAIQdQVKlLkKEL 813 (820)
+++.-.++..++++...+...|
T Consensus 222 l~~~~~k~~~l~~~~~~~~~~L 243 (264)
T PF06008_consen 222 LEDLEKKKQELSEQQNEVSETL 243 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Done!