Query 003431
Match_columns 820
No_of_seqs 91 out of 93
Neff 2.4
Searched_HMMs 29240
Date Tue Mar 26 00:58:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003431.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003431hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.1 0.04 1.4E-06 50.0 17.6 74 663-736 2-75 (284)
2 3na7_A HP0958; flagellar bioge 97.0 0.02 7E-07 56.7 16.5 89 668-756 12-107 (256)
3 3na7_A HP0958; flagellar bioge 96.7 0.067 2.3E-06 53.0 17.5 87 687-776 17-103 (256)
4 2dfs_A Myosin-5A; myosin-V, in 95.5 0.088 3E-06 62.2 12.9 111 664-776 925-1043(1080)
5 3u59_A Tropomyosin beta chain; 94.6 0.47 1.6E-05 41.8 11.9 92 663-756 5-96 (101)
6 3oja_B Anopheles plasmodium-re 94.5 0.14 4.7E-06 54.3 10.0 20 797-816 565-584 (597)
7 1i84_S Smooth muscle myosin he 94.0 0.16 5.4E-06 59.9 9.9 46 664-709 861-906 (1184)
8 3u1c_A Tropomyosin alpha-1 cha 93.9 0.78 2.7E-05 40.7 11.9 92 663-756 5-96 (101)
9 1i84_S Smooth muscle myosin he 93.3 0.27 9.3E-06 58.0 10.4 53 666-718 856-908 (1184)
10 2jee_A YIIU; FTSZ, septum, coi 92.1 0.8 2.8E-05 40.3 9.1 58 663-720 9-73 (81)
11 3ghg_A Fibrinogen alpha chain; 91.8 0.41 1.4E-05 53.5 8.7 74 663-736 60-144 (562)
12 3oja_B Anopheles plasmodium-re 91.3 1.2 4E-05 47.3 11.3 40 663-702 452-491 (597)
13 1wt6_A Myotonin-protein kinase 90.0 2.4 8.3E-05 37.5 10.1 60 671-730 14-73 (81)
14 1m1j_B Fibrinogen beta chain; 89.5 3.5 0.00012 45.4 13.2 91 664-756 97-192 (464)
15 3ol1_A Vimentin; structural ge 89.0 8.6 0.00029 34.9 13.4 52 658-709 11-62 (119)
16 3vkg_A Dynein heavy chain, cyt 88.8 5.3 0.00018 52.6 16.1 42 773-814 2028-2073(3245)
17 1deq_A Fibrinogen (alpha chain 88.1 6.4 0.00022 42.7 13.8 84 663-755 63-157 (390)
18 3o0z_A RHO-associated protein 87.9 5.7 0.00019 38.9 12.1 58 699-756 94-153 (168)
19 1ic2_A Tropomyosin alpha chain 85.4 14 0.00047 31.4 11.8 72 664-735 3-74 (81)
20 2dfs_A Myosin-5A; myosin-V, in 85.4 7.7 0.00026 46.1 13.8 29 506-535 682-710 (1080)
21 1cii_A Colicin IA; bacteriocin 85.3 18 0.00062 40.5 15.6 121 665-817 339-460 (602)
22 1l8d_A DNA double-strand break 85.2 12 0.00041 32.5 11.7 37 718-756 66-102 (112)
23 2fxo_A Myosin heavy chain, car 84.8 23 0.00079 32.3 14.0 70 686-757 25-94 (129)
24 3hnw_A Uncharacterized protein 84.5 19 0.00063 33.8 13.3 97 653-752 19-130 (138)
25 3cvf_A Homer-3, homer protein 84.3 5.3 0.00018 35.0 8.9 64 673-736 12-75 (79)
26 2v4h_A NF-kappa-B essential mo 84.3 11 0.00037 35.0 11.3 60 658-721 22-81 (110)
27 1wle_A Seryl-tRNA synthetase; 83.6 3.9 0.00013 45.0 9.7 33 687-719 69-101 (501)
28 1l8d_A DNA double-strand break 82.9 9.5 0.00032 33.1 10.0 9 726-734 34-42 (112)
29 3u1c_A Tropomyosin alpha-1 cha 82.8 17 0.00058 32.2 11.7 52 684-735 5-56 (101)
30 3cve_A Homer protein homolog 1 82.7 14 0.00047 31.9 10.7 51 686-736 19-69 (72)
31 2dq0_A Seryl-tRNA synthetase; 81.7 4.1 0.00014 44.1 8.8 68 665-732 36-106 (455)
32 3mq9_A Bone marrow stromal ant 81.4 5.9 0.0002 41.2 9.7 15 741-755 445-459 (471)
33 2jee_A YIIU; FTSZ, septum, coi 81.2 18 0.00061 31.9 11.0 64 669-732 8-71 (81)
34 3q8t_A Beclin-1; autophagy, AT 80.4 19 0.00065 31.8 11.2 49 669-717 6-54 (96)
35 1wle_A Seryl-tRNA synthetase; 79.9 7.4 0.00025 42.9 10.2 25 668-692 78-102 (501)
36 4dnd_A Syntaxin-10, SYN10; str 79.5 10 0.00035 35.2 9.5 22 663-684 34-55 (130)
37 3vkg_A Dynein heavy chain, cyt 79.5 20 0.00069 47.5 15.3 18 21-38 1016-1035(3245)
38 3hnw_A Uncharacterized protein 78.6 22 0.00077 33.2 11.6 55 681-735 75-129 (138)
39 1m1j_A Fibrinogen alpha subuni 78.2 15 0.00051 40.9 11.8 31 664-694 62-92 (491)
40 1ses_A Seryl-tRNA synthetase; 77.5 3.6 0.00012 43.9 6.7 63 665-727 33-96 (421)
41 3nmd_A CGMP dependent protein 76.7 9 0.00031 33.2 7.6 47 691-737 22-68 (72)
42 3qne_A Seryl-tRNA synthetase, 76.7 7.3 0.00025 43.0 8.9 66 665-730 38-106 (485)
43 2v71_A Nuclear distribution pr 76.5 31 0.0011 34.2 12.4 70 667-736 24-101 (189)
44 3u59_A Tropomyosin beta chain; 75.9 39 0.0013 29.6 11.7 53 684-736 5-57 (101)
45 3lay_A Zinc resistance-associa 75.4 4.6 0.00016 39.2 6.2 18 717-734 114-131 (175)
46 4fla_A Regulation of nuclear P 74.0 48 0.0016 31.6 12.6 116 653-780 15-141 (152)
47 4emc_A Monopolin complex subun 72.5 18 0.00062 36.1 9.6 71 662-732 8-78 (190)
48 4dk0_A Putative MACA; alpha-ha 71.2 24 0.00081 35.2 10.4 27 659-685 62-88 (369)
49 2ke4_A CDC42-interacting prote 71.1 20 0.0007 32.0 8.8 31 662-692 17-47 (98)
50 2v71_A Nuclear distribution pr 70.3 42 0.0014 33.3 11.7 34 665-698 47-80 (189)
51 3ol1_A Vimentin; structural ge 69.9 62 0.0021 29.3 11.9 42 695-736 34-75 (119)
52 3iv1_A Tumor susceptibility ge 69.8 25 0.00086 30.8 8.9 58 665-726 16-73 (78)
53 3qh9_A Liprin-beta-2; coiled-c 69.2 47 0.0016 29.5 10.4 59 670-732 19-77 (81)
54 2no2_A HIP-I, huntingtin-inter 69.0 67 0.0023 29.0 12.8 72 665-736 6-81 (107)
55 3lay_A Zinc resistance-associa 68.6 28 0.00095 33.8 9.9 58 663-723 70-134 (175)
56 2xs1_A Programmed cell death 6 68.3 16 0.00056 41.1 9.4 40 741-783 607-646 (704)
57 3htk_A Structural maintenance 68.1 18 0.0006 28.6 7.0 36 689-724 20-55 (60)
58 2w83_C C-JUN-amino-terminal ki 68.0 31 0.001 30.4 9.0 47 673-719 8-54 (77)
59 1m1j_C Fibrinogen gamma chain; 67.4 44 0.0015 36.3 12.1 52 702-755 84-135 (409)
60 2dq3_A Seryl-tRNA synthetase; 67.1 4.1 0.00014 43.5 4.2 68 665-732 35-105 (425)
61 1vcs_A Vesicle transport throu 67.1 33 0.0011 30.3 9.3 72 665-736 14-94 (102)
62 2dq0_A Seryl-tRNA synthetase; 66.6 17 0.00057 39.4 8.7 31 688-718 31-61 (455)
63 3m91_A Proteasome-associated A 65.5 21 0.00072 29.0 7.0 41 695-735 9-49 (51)
64 3lss_A Seryl-tRNA synthetase; 64.9 19 0.00064 39.8 8.8 30 665-694 42-71 (484)
65 3cvf_A Homer-3, homer protein 64.9 15 0.00051 32.2 6.5 52 682-733 7-58 (79)
66 3ghg_A Fibrinogen alpha chain; 64.9 39 0.0013 38.2 11.3 40 693-732 115-154 (562)
67 1ik9_A DNA repair protein XRCC 64.7 40 0.0014 33.5 10.4 78 655-732 111-198 (213)
68 4dyl_A Tyrosine-protein kinase 64.6 30 0.001 36.3 10.0 40 697-736 304-343 (406)
69 2zqm_A Prefoldin beta subunit 64.5 60 0.0021 27.9 10.3 32 740-771 78-109 (117)
70 1ic2_A Tropomyosin alpha chain 64.5 54 0.0018 27.8 9.8 52 685-736 3-54 (81)
71 2xs1_A Programmed cell death 6 64.5 1.7E+02 0.0057 33.1 16.5 18 766-783 559-576 (704)
72 1ecm_A Endo-oxabicyclic transi 64.4 73 0.0025 27.8 11.5 35 662-696 7-41 (109)
73 2zqm_A Prefoldin beta subunit 64.3 23 0.0008 30.5 7.7 39 698-736 9-47 (117)
74 3jsv_C NF-kappa-B essential mo 64.2 62 0.0021 29.3 10.5 70 663-736 5-81 (94)
75 3iyk_A VP5; icosahedral virus; 64.1 1.3E+02 0.0043 34.1 15.0 105 660-773 90-195 (526)
76 3cve_A Homer protein homolog 1 64.0 26 0.00088 30.3 7.7 49 685-733 4-52 (72)
77 3i00_A HIP-I, huntingtin-inter 64.0 73 0.0025 29.4 11.3 68 666-736 14-81 (120)
78 1fxk_C Protein (prefoldin); ar 64.0 80 0.0027 28.1 12.0 29 664-692 5-33 (133)
79 3ghg_C Fibrinogen gamma chain; 63.5 51 0.0017 36.0 11.7 92 664-757 35-137 (411)
80 3fpp_A Macrolide-specific effl 62.8 26 0.00088 34.6 8.7 24 659-682 61-84 (341)
81 3oja_A Leucine-rich immune mol 62.3 1.5E+02 0.005 31.0 14.6 20 785-804 465-484 (487)
82 1gqe_A Release factor 2, RF2; 62.3 43 0.0015 36.0 10.7 66 722-787 8-75 (365)
83 3a7p_A Autophagy protein 16; c 62.0 58 0.002 31.6 10.5 57 668-724 69-125 (152)
84 1ses_A Seryl-tRNA synthetase; 61.5 11 0.00038 40.2 6.2 25 679-703 33-57 (421)
85 1ci6_A Transcription factor AT 61.4 42 0.0014 27.5 8.3 53 681-733 9-61 (63)
86 3qne_A Seryl-tRNA synthetase, 60.7 26 0.0009 38.7 9.0 27 678-704 37-63 (485)
87 1yvl_A Signal transducer and a 60.6 1.4E+02 0.0049 34.5 15.1 44 770-819 275-319 (683)
88 3rmi_A Chorismate mutase prote 60.5 96 0.0033 27.9 11.5 33 663-695 15-47 (114)
89 3tnu_A Keratin, type I cytoske 60.1 1E+02 0.0035 28.0 11.8 21 665-685 43-63 (131)
90 2i1j_A Moesin; FERM, coiled-co 59.9 4.3 0.00015 45.0 2.8 83 648-732 287-372 (575)
91 3swk_A Vimentin; cytoskeleton, 59.8 87 0.003 27.1 10.7 37 669-705 2-38 (86)
92 2v66_B Nuclear distribution pr 59.5 98 0.0033 28.5 11.1 81 667-747 3-85 (111)
93 2v4h_A NF-kappa-B essential mo 58.3 80 0.0027 29.3 10.3 45 688-732 62-106 (110)
94 1ybz_A Chorismate mutase; cons 56.5 53 0.0018 28.7 8.5 35 662-696 19-53 (91)
95 3oja_A Leucine-rich immune mol 56.0 1.4E+02 0.0048 31.2 13.2 9 744-752 412-420 (487)
96 3l4q_C Phosphatidylinositol 3- 55.7 1.3E+02 0.0046 29.4 12.0 35 663-697 34-68 (170)
97 3tnu_B Keratin, type II cytosk 55.4 1.2E+02 0.0041 27.4 11.8 35 673-707 35-69 (129)
98 3uun_A Dystrophin; triple heli 55.1 53 0.0018 27.1 8.1 59 669-727 45-110 (119)
99 3ghg_B Fibrinogen beta chain; 54.5 50 0.0017 36.7 9.8 47 654-704 86-132 (461)
100 1fxk_A Prefoldin; archaeal pro 54.5 99 0.0034 26.2 12.2 39 698-736 4-42 (107)
101 2gtv_X CM, chorismate mutase; 54.5 79 0.0027 28.3 9.5 34 663-696 6-47 (104)
102 1dn1_B Syntaxin 1A, syntaxin b 54.2 1.8E+02 0.0061 29.1 17.4 110 662-773 68-196 (267)
103 4fla_A Regulation of nuclear P 54.2 1E+02 0.0035 29.3 10.8 76 671-751 72-147 (152)
104 3ter_A Mammalian stromal inter 53.9 70 0.0024 30.6 9.5 37 739-775 90-126 (136)
105 4e61_A Protein BIM1; EB1-like 53.5 1.1E+02 0.0037 28.2 10.3 45 664-708 8-52 (106)
106 2aze_A Transcription factor DP 53.4 31 0.0011 33.5 7.2 39 674-712 5-43 (155)
107 4etp_A Kinesin-like protein KA 53.3 33 0.0011 36.5 8.1 38 667-704 3-40 (403)
108 1f5n_A Interferon-induced guan 52.9 1.7E+02 0.0059 32.8 14.0 64 752-815 472-537 (592)
109 3hhm_B NISH2 P85alpha; PI3KCA, 52.9 1.1E+02 0.0039 32.4 12.0 31 663-693 143-173 (373)
110 3htk_A Structural maintenance 52.2 83 0.0028 24.7 8.4 28 700-727 24-51 (60)
111 1cii_A Colicin IA; bacteriocin 51.8 1.1E+02 0.0038 34.5 12.0 72 663-734 359-433 (602)
112 2efr_A General control protein 51.5 1.7E+02 0.0059 28.1 14.8 20 739-758 98-117 (155)
113 3bas_A Myosin heavy chain, str 51.2 1.2E+02 0.0041 26.2 11.6 59 689-756 29-87 (89)
114 3lss_A Seryl-tRNA synthetase; 50.1 42 0.0014 37.0 8.5 28 688-715 37-64 (484)
115 2c5k_T Syntaxin TLG1, T-snare 50.1 14 0.00047 32.8 3.8 15 663-677 13-27 (95)
116 4etp_A Kinesin-like protein KA 50.0 46 0.0016 35.4 8.5 54 683-736 5-58 (403)
117 1go4_E MAD1 (mitotic arrest de 49.8 80 0.0027 28.7 8.8 20 717-736 69-88 (100)
118 2fxo_A Myosin heavy chain, car 49.4 1.5E+02 0.0052 26.9 12.7 46 665-710 18-63 (129)
119 1d7m_A Cortexillin I; coiled-c 48.6 1E+02 0.0034 28.1 9.1 43 690-732 13-55 (101)
120 2w83_C C-JUN-amino-terminal ki 48.5 1.2E+02 0.0041 26.7 9.3 49 668-716 10-58 (77)
121 3onj_A T-snare VTI1; helix, HA 48.4 1.4E+02 0.0047 26.1 10.4 55 682-736 31-93 (97)
122 3m9b_A Proteasome-associated A 48.0 14 0.00049 38.0 4.2 41 696-736 55-95 (251)
123 2a01_A Apolipoprotein A-I; fou 47.2 2.1E+02 0.0072 28.2 12.2 29 683-711 72-104 (243)
124 1bf5_A Signal transducer and a 47.0 2.6E+02 0.0089 31.8 14.2 43 770-818 140-183 (575)
125 1ykh_B RNA polymerase II holoe 46.7 73 0.0025 29.5 8.3 74 663-736 53-126 (132)
126 2xdj_A Uncharacterized protein 46.7 1.5E+02 0.0051 25.9 10.2 38 697-734 22-59 (83)
127 3pik_A Cation efflux system pr 46.4 2.3E+02 0.008 28.1 14.0 58 654-714 320-377 (446)
128 2dnx_A Syntaxin-12; snare, HAB 46.3 1.7E+02 0.0059 26.6 10.6 26 661-686 45-70 (130)
129 2qyw_A Vesicle transport throu 46.1 1.4E+02 0.0049 26.3 9.7 25 681-705 45-69 (102)
130 1m1j_B Fibrinogen beta chain; 45.8 2.2E+02 0.0077 31.5 13.2 68 699-780 125-192 (464)
131 3a7p_A Autophagy protein 16; c 45.8 2.2E+02 0.0075 27.6 11.7 43 674-716 68-110 (152)
132 3o0z_A RHO-associated protein 45.7 2.3E+02 0.0078 27.8 16.3 114 666-779 5-134 (168)
133 3u06_A Protein claret segregat 45.7 63 0.0022 34.7 8.8 54 683-736 5-58 (412)
134 1deq_A Fibrinogen (alpha chain 45.4 2.8E+02 0.0095 30.4 13.5 46 691-736 116-161 (390)
135 2f1m_A Acriflavine resistance 45.0 1.3E+02 0.0045 28.7 10.2 74 659-736 52-132 (277)
136 1f5n_A Interferon-induced guan 44.8 3.8E+02 0.013 30.1 15.2 11 801-811 571-581 (592)
137 3uul_A Utrophin; spectrin repe 44.7 98 0.0033 25.6 8.1 58 669-726 45-109 (118)
138 3q8t_A Beclin-1; autophagy, AT 43.9 1.7E+02 0.0058 25.8 10.3 24 693-716 16-39 (96)
139 2nrj_A HBL B protein; enteroto 43.7 1E+02 0.0034 32.3 9.7 15 763-777 226-240 (346)
140 3etw_A Adhesin A; antiparallel 43.7 1.6E+02 0.0056 27.4 10.0 19 664-682 6-24 (119)
141 2xdj_A Uncharacterized protein 43.4 1.4E+02 0.0048 26.1 9.0 62 665-726 4-65 (83)
142 3trt_A Vimentin; cytoskeleton, 43.3 77 0.0026 26.1 7.2 44 672-715 33-76 (77)
143 2dq3_A Seryl-tRNA synthetase; 43.0 41 0.0014 35.9 6.9 60 675-734 31-100 (425)
144 3qh9_A Liprin-beta-2; coiled-c 42.2 1.6E+02 0.0053 26.2 9.1 54 693-755 24-77 (81)
145 1yke_B RNA polymerase II holoe 41.8 84 0.0029 29.9 8.1 74 663-736 53-126 (151)
146 4dci_A Uncharacterized protein 41.1 2.1E+02 0.0073 27.4 10.7 38 699-736 70-107 (150)
147 3l4q_C Phosphatidylinositol 3- 40.8 1.1E+02 0.0039 29.9 8.9 70 653-722 78-151 (170)
148 3q0x_A Centriole protein; cent 40.1 1.2E+02 0.0041 30.8 9.3 65 654-721 154-218 (228)
149 3haj_A Human pacsin2 F-BAR; pa 39.8 1.8E+02 0.0063 31.0 11.2 17 767-783 228-244 (486)
150 2vkl_A RV0948C/MT0975; helical 39.7 44 0.0015 28.9 5.3 36 661-696 13-48 (90)
151 2zdi_C Prefoldin subunit alpha 39.7 1.7E+02 0.0058 26.8 9.6 22 665-686 14-35 (151)
152 3i00_A HIP-I, huntingtin-inter 39.6 2.3E+02 0.0079 26.1 10.7 63 663-728 18-80 (120)
153 2d8d_A Aroag, phospho-2-dehydr 39.4 46 0.0016 28.1 5.3 34 663-696 6-39 (90)
154 3mq9_A Bone marrow stromal ant 39.2 3.5E+02 0.012 28.1 13.0 62 671-736 356-417 (471)
155 1j1d_C Troponin I, TNI; THIN f 38.8 2.6E+02 0.0088 26.5 11.1 67 670-736 29-106 (133)
156 1yc9_A VCEC, multidrug resista 38.3 2.8E+02 0.0096 27.6 11.6 58 654-714 316-373 (442)
157 4dk0_A Putative MACA; alpha-ha 37.9 77 0.0026 31.5 7.5 38 696-733 116-153 (369)
158 3a7o_A Autophagy protein 16; c 37.7 54 0.0019 28.7 5.5 41 706-748 15-55 (75)
159 1hjb_A Ccaat/enhancer binding 37.5 1.9E+02 0.0065 25.5 9.0 44 693-736 34-77 (87)
160 1bg1_A Protein (transcription 36.2 5.4E+02 0.019 29.4 15.9 44 770-819 153-197 (596)
161 2ve7_C Kinetochore protein NUF 36.2 37 0.0013 34.2 5.0 21 738-758 189-209 (250)
162 3tnu_A Keratin, type I cytoske 36.2 1.7E+02 0.0058 26.6 8.9 20 686-705 50-69 (131)
163 3bas_A Myosin heavy chain, str 36.0 2.1E+02 0.0073 24.6 11.4 42 664-705 18-59 (89)
164 1lwu_C Fibrinogen gamma chain; 35.8 81 0.0028 33.3 7.6 45 692-736 9-53 (323)
165 3fhn_A Protein transport prote 35.3 1.3E+02 0.0046 34.8 9.8 16 799-814 123-138 (706)
166 1m1j_C Fibrinogen gamma chain; 35.1 2.3E+02 0.0079 30.7 11.1 46 691-736 87-132 (409)
167 2avr_X Adhesion A; antiparalle 35.0 2.9E+02 0.0099 25.9 13.9 34 743-777 52-85 (119)
168 1gd2_E Transcription factor PA 34.9 1.9E+02 0.0065 24.6 8.3 49 686-734 16-68 (70)
169 1j1e_C Troponin I, TNI; THIN f 34.8 3.2E+02 0.011 27.1 11.1 67 670-736 29-106 (180)
170 3d5k_A OPRM, outer membrane pr 34.8 2.5E+02 0.0085 28.5 10.8 60 654-716 329-388 (474)
171 3efg_A Protein SLYX homolog; x 34.7 99 0.0034 26.6 6.7 56 660-715 7-62 (78)
172 3frt_A Charged multivesicular 34.6 91 0.0031 31.2 7.4 44 740-793 22-81 (218)
173 4e81_A Chaperone protein DNAK; 34.6 1.9E+02 0.0066 28.2 9.6 16 660-675 119-134 (219)
174 4dnd_A Syntaxin-10, SYN10; str 34.3 2.8E+02 0.0097 25.6 12.4 14 801-814 116-129 (130)
175 1ek9_A Outer membrane protein 34.1 2.5E+02 0.0087 27.5 10.4 60 654-716 287-346 (428)
176 3ret_A Salicylate biosynthesis 34.1 2.1E+02 0.0073 24.7 8.8 35 662-696 10-44 (101)
177 3hhm_B NISH2 P85alpha; PI3KCA, 33.7 60 0.002 34.6 6.3 49 672-720 210-258 (373)
178 2efr_A General control protein 33.7 3.3E+02 0.011 26.2 12.0 17 741-757 93-109 (155)
179 3fhn_A Protein transport prote 32.8 4.8E+02 0.016 30.4 13.7 25 671-695 14-38 (706)
180 1ez3_A Syntaxin-1A; three heli 32.7 2.4E+02 0.0083 24.3 9.9 64 663-726 8-74 (127)
181 1quu_A Human skeletal muscle a 32.7 3.3E+02 0.011 25.8 14.6 112 665-776 53-175 (250)
182 3s84_A Apolipoprotein A-IV; fo 32.3 4.2E+02 0.014 26.9 16.3 51 682-732 38-97 (273)
183 3teq_A Stromal interaction mol 31.9 95 0.0032 28.4 6.3 38 738-775 56-93 (101)
184 3fpp_A Macrolide-specific effl 31.8 1.7E+02 0.0059 28.7 8.9 13 737-749 109-121 (341)
185 3sjb_C Golgi to ER traffic pro 31.1 1.1E+02 0.0039 27.6 6.6 23 664-686 20-42 (93)
186 1m1j_A Fibrinogen alpha subuni 30.9 6.1E+02 0.021 28.6 13.5 34 699-732 122-155 (491)
187 1fxk_C Protein (prefoldin); ar 30.7 62 0.0021 28.8 5.0 36 669-704 90-125 (133)
188 3gp4_A Transcriptional regulat 30.6 1.8E+02 0.0062 26.5 8.2 9 658-666 39-47 (142)
189 2inr_A DNA topoisomerase 4 sub 30.6 5.7E+02 0.02 28.7 13.5 63 739-812 435-497 (514)
190 3mq7_A Bone marrow stromal ant 30.2 3.6E+02 0.012 25.5 11.1 16 741-756 94-109 (121)
191 1go4_E MAD1 (mitotic arrest de 30.2 89 0.003 28.4 5.9 70 666-735 11-94 (100)
192 2yy0_A C-MYC-binding protein; 30.1 65 0.0022 26.0 4.5 24 692-715 23-46 (53)
193 4aj5_K Spindle and kinetochore 30.1 2.1E+02 0.0071 27.1 8.4 27 745-771 88-114 (123)
194 2pih_A Protein YMCA; regulate 29.7 3.4E+02 0.012 25.2 10.0 97 658-755 2-109 (151)
195 3q0x_A Centriole protein; cent 29.5 2E+02 0.0067 29.3 8.9 50 683-732 166-215 (228)
196 1wt6_A Myotonin-protein kinase 29.4 3E+02 0.01 24.4 9.9 29 708-736 44-72 (81)
197 3onj_A T-snare VTI1; helix, HA 29.2 2.9E+02 0.0098 24.1 9.0 38 656-693 23-60 (97)
198 3mtu_A Tropomyosin alpha-1 cha 29.2 1.8E+02 0.0063 24.6 7.4 38 671-708 6-43 (75)
199 1vcs_A Vesicle transport throu 29.1 1.1E+02 0.0038 26.9 6.3 62 656-717 27-89 (102)
200 3ryc_E Stathmin-4; alpha-tubul 28.9 4E+02 0.014 25.6 12.7 15 660-674 43-57 (143)
201 1t2k_D Cyclic-AMP-dependent tr 28.9 2.2E+02 0.0077 22.7 9.2 42 691-732 18-59 (61)
202 1zvu_A Topoisomerase IV subuni 28.8 6.2E+02 0.021 29.6 13.7 64 739-813 383-446 (716)
203 3jsv_C NF-kappa-B essential mo 28.7 2.2E+02 0.0075 25.8 8.0 49 688-736 40-88 (94)
204 1y1u_A Signal transducer and a 28.6 7E+02 0.024 28.4 15.0 44 769-819 163-207 (585)
205 3r6n_A Desmoplakin; spectrin r 28.3 6E+02 0.021 27.5 14.4 111 665-778 131-250 (450)
206 2qyw_A Vesicle transport throu 28.1 1.5E+02 0.0053 26.1 7.0 14 665-678 47-60 (102)
207 3lbx_B Beta-I spectrin, spectr 28.0 3.5E+02 0.012 24.7 12.8 108 665-778 49-158 (185)
208 3htk_B Structural maintenance 27.7 2.6E+02 0.0089 23.1 10.3 39 667-705 4-42 (73)
209 2ocy_A RAB guanine nucleotide 27.3 4.3E+02 0.015 25.5 14.7 31 785-815 117-147 (154)
210 1ytz_I Troponin I; muscle, THI 27.3 2.3E+02 0.0078 28.2 8.7 67 670-736 27-103 (182)
211 2nrj_A HBL B protein; enteroto 27.3 4.3E+02 0.015 27.6 11.3 18 739-756 176-193 (346)
212 1jnm_A Proto-oncogene C-JUN; B 26.8 2E+02 0.0068 23.2 6.9 40 692-731 19-58 (62)
213 2xcs_B DNA gyrase subunit B, D 26.4 7.5E+02 0.026 28.8 13.8 49 758-812 632-680 (692)
214 3mq7_A Bone marrow stromal ant 26.4 4.2E+02 0.014 25.0 11.8 27 704-730 73-99 (121)
215 4b9q_A Chaperone protein DNAK; 26.3 3E+02 0.01 30.2 10.4 17 659-675 506-522 (605)
216 4b6x_A AVRRPS4, avirulence pro 26.1 3.5E+02 0.012 24.3 8.7 28 657-684 19-46 (90)
217 2oto_A M protein; helical coil 26.0 3.9E+02 0.013 24.6 14.4 23 686-708 55-77 (155)
218 2eqb_B RAB guanine nucleotide 25.9 3E+02 0.01 25.0 8.4 61 672-732 3-63 (97)
219 1ci6_A Transcription factor AT 25.7 2.7E+02 0.0094 22.7 8.2 41 679-719 21-61 (63)
220 3viq_A SWI5-dependent recombin 25.6 1.6E+02 0.0054 27.3 6.8 23 695-717 7-29 (122)
221 3m91_A Proteasome-associated A 25.6 2.2E+02 0.0075 23.1 6.8 39 668-706 10-48 (51)
222 1nkp_B MAX protein, MYC proto- 25.5 2.9E+02 0.01 23.0 8.6 14 681-694 12-25 (83)
223 3m9b_A Proteasome-associated A 25.5 72 0.0025 33.0 5.0 41 690-730 56-96 (251)
224 2cly_A ATP synthase B chain, m 25.4 5.3E+02 0.018 25.9 13.4 40 652-694 68-108 (214)
225 1zxa_A CGMP-dependent protein 25.2 1E+02 0.0035 26.3 5.1 21 716-736 32-52 (67)
226 2wt7_A Proto-oncogene protein 25.1 2E+02 0.0068 23.3 6.6 42 691-732 19-60 (63)
227 2q6q_A Spindle POLE BODY compo 24.8 67 0.0023 28.0 3.9 28 709-736 3-30 (74)
228 1s94_A S-syntaxin; three helix 24.7 4.2E+02 0.014 24.5 11.6 16 665-680 41-56 (180)
229 3u06_A Protein claret segregat 24.6 1.7E+02 0.0056 31.5 7.8 38 669-706 5-42 (412)
230 1uix_A RHO-associated kinase; 24.5 3.5E+02 0.012 23.5 10.1 29 666-694 3-31 (71)
231 3efg_A Protein SLYX homolog; x 24.5 1.2E+02 0.0041 26.1 5.4 44 665-708 19-62 (78)
232 3rrk_A V-type ATPase 116 kDa s 24.4 2E+02 0.0067 29.1 7.9 42 653-694 209-253 (357)
233 3axj_A GM27569P, translin; tra 24.3 1.4E+02 0.0048 30.0 6.8 42 665-706 20-61 (249)
234 3vp9_A General transcriptional 24.3 1.2E+02 0.0041 27.3 5.5 45 765-815 42-86 (92)
235 1xaw_A Occludin; coiled-coil, 24.2 4.8E+02 0.016 25.0 10.7 41 696-736 46-86 (140)
236 2wt7_A Proto-oncogene protein 24.2 2.9E+02 0.0098 22.4 9.7 15 700-714 42-56 (63)
237 1nkp_A C-MYC, MYC proto-oncoge 23.9 3.5E+02 0.012 23.3 9.2 31 706-736 56-86 (88)
238 3okq_A BUD site selection prot 23.6 2.6E+02 0.0089 26.9 8.0 31 706-736 51-81 (141)
239 4b4t_K 26S protease regulatory 23.6 1.1E+02 0.0039 32.8 6.3 15 761-775 176-190 (428)
240 3ilw_A DNA gyrase subunit A; D 23.5 8E+02 0.027 27.3 13.8 64 739-813 397-460 (470)
241 2p4v_A Transcription elongatio 23.4 3E+02 0.01 25.8 8.4 27 669-695 11-38 (158)
242 1x79_B RAB GTPase binding effe 22.9 4.2E+02 0.015 24.5 9.0 80 698-782 2-89 (112)
243 3hh0_A Transcriptional regulat 22.8 1.3E+02 0.0043 27.7 5.6 51 703-753 81-133 (146)
244 3kdq_A Uncharacterized conserv 22.8 1.5E+02 0.005 28.3 6.2 56 698-755 80-151 (154)
245 1jcd_A Major outer membrane li 22.6 3.1E+02 0.011 22.3 7.6 46 667-719 4-49 (52)
246 3ljc_A ATP-dependent protease 22.5 1.3E+02 0.0045 29.3 6.0 25 790-814 222-249 (252)
247 1sig_A Sigma70, RNA polymerase 22.4 2.7E+02 0.0093 28.0 8.5 34 742-775 226-259 (339)
248 2j69_A Bacterial dynamin-like 22.4 8.6E+02 0.029 27.3 15.9 35 686-720 350-384 (695)
249 3twe_A Alpha4H; unknown functi 22.3 75 0.0026 23.0 3.1 18 719-736 4-21 (27)
250 2a01_A Apolipoprotein A-I; fou 22.3 1.4E+02 0.0047 29.6 6.2 14 692-705 92-105 (243)
251 1s94_A S-syntaxin; three helix 21.0 3.9E+02 0.013 24.7 8.7 60 663-726 46-105 (180)
252 1ytz_T Troponin T; muscle, THI 20.9 2.5E+02 0.0085 25.6 7.0 44 692-735 46-89 (107)
253 1gd2_E Transcription factor PA 20.9 1.5E+02 0.005 25.3 5.2 56 665-726 12-67 (70)
254 2zdi_C Prefoldin subunit alpha 20.8 73 0.0025 29.2 3.6 13 665-677 103-115 (151)
255 3s4r_A Vimentin; alpha-helix, 20.8 4.3E+02 0.015 23.1 9.7 79 675-755 10-93 (93)
256 1gu4_A CAAT/enhancer binding p 20.6 3.9E+02 0.013 23.1 7.8 40 693-732 34-73 (78)
257 2d4y_A HAP1, flagellar HOOK-as 20.5 7.8E+02 0.027 26.1 13.5 14 794-807 133-146 (463)
258 2oqq_A Transcription factor HY 20.4 92 0.0032 24.8 3.5 27 742-772 13-39 (42)
259 2gd5_A Charged multivesicular 20.4 5.4E+02 0.018 24.2 11.6 28 662-689 9-36 (179)
260 4f61_I Stathmin-like domain R4 20.3 7.3E+02 0.025 25.6 11.8 15 660-674 42-56 (240)
261 2f23_A Anti-cleavage anti-GREA 20.2 4E+02 0.014 24.6 8.5 27 669-695 12-38 (156)
262 3nvt_A 3-deoxy-D-arabino-heptu 20.0 49 0.0017 35.3 2.6 47 650-696 17-64 (385)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.07 E-value=0.04 Score=50.00 Aligned_cols=74 Identities=8% Similarity=0.238 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
+.|+++|..+..+|..+......+..++..++..+..+...+..+..+...++..+.....++..++..+..+.
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (284)
T 1c1g_A 2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAE 75 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888777777777777777777777777776666666666666555555555555444433
No 2
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.03 E-value=0.02 Score=56.70 Aligned_cols=89 Identities=9% Similarity=0.106 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCChH-
Q 003431 668 QIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK----NAISVD- 742 (820)
Q Consensus 668 KIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR----NASSeE- 742 (820)
.++.++.+|..+...|..+-.++..+..++..+..++..+..+...++..+.....+++.++..+.+.+ +.++..
T Consensus 12 ~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE 91 (256)
T 3na7_A 12 EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERE 91 (256)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH
Confidence 355667788888888888888888888888888888888888888888777777777777777776655 233443
Q ss_pred --hHHHHHHhhhhhhh
Q 003431 743 --DIDGSIRNMEHRIA 756 (820)
Q Consensus 743 --EIDarIKsLEyRIQ 756 (820)
.|.+.|..++.+++
T Consensus 92 ~~aL~kEie~~~~~i~ 107 (256)
T 3na7_A 92 LRSLNIEEDIAKERSN 107 (256)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 34444444444443
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.74 E-value=0.067 Score=53.03 Aligned_cols=87 Identities=13% Similarity=0.269 Sum_probs=40.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHHHHHhhhhhhhcCCCChHHHH
Q 003431 687 RDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEK 766 (820)
Q Consensus 687 ieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEIDarIKsLEyRIQHESLSLkEEK 766 (820)
..++..++.++..+-.++..|..+...++..+.....+++.+...+.++.. ..+++..+|+..+-++...+ +-+|=.
T Consensus 17 D~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~--~i~~~~~ri~~~~~~l~~v~-~~kE~~ 93 (256)
T 3na7_A 17 DKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQ--TLQDTNAKIASIQKKMSEIK-SERELR 93 (256)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCS-SSSHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHccC-CHHHHH
Confidence 334444444444444555555555555555555555555555554444442 44445555555555554333 333334
Q ss_pred HHHHHHHHHH
Q 003431 767 QIIREIKQLK 776 (820)
Q Consensus 767 KLLKEIKQLK 776 (820)
-|.+||..++
T Consensus 94 aL~kEie~~~ 103 (256)
T 3na7_A 94 SLNIEEDIAK 103 (256)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.47 E-value=0.088 Score=62.19 Aligned_cols=111 Identities=17% Similarity=0.325 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHH----HHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQ----TIRASYKEY---AEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIK----AKRAERsEL---IeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
+++.+|.+++..++.+.+.+..+.++++ ++..++..| .+.|+.+..+...+...+.+..+|++.|++.+.++.
T Consensus 925 ~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ 1004 (1080)
T 2dfs_A 925 GLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ 1004 (1080)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666555555555544433 223344444 333444444444444555555556666666665555
Q ss_pred cCCChHhHHHHHHhhhhhhhcCCCChHHHHHHHHH-HHHHH
Q 003431 737 NAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIRE-IKQLK 776 (820)
Q Consensus 737 NASSeEEIDarIKsLEyRIQHESLSLkEEKKLLKE-IKQLK 776 (820)
+ -.+++..++..+..+++..--.|++|++.|++ +.+|+
T Consensus 1005 k--e~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1005 T--EKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 34556666666666666555567777776654 55555
No 5
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.56 E-value=0.47 Score=41.81 Aligned_cols=92 Identities=9% Similarity=0.254 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVD 742 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeE 742 (820)
+.||+||..+..+......+-...-.+++....++..+-..+.+|.-+++.+...++.....+...+..|..... ...
T Consensus 5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek--~~~ 82 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEK--KAT 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 467888888888777777776677777777777777777777777777777777777666666666555544442 122
Q ss_pred hHHHHHHhhhhhhh
Q 003431 743 DIDGSIRNMEHRIA 756 (820)
Q Consensus 743 EIDarIKsLEyRIQ 756 (820)
+-++.++.|..|||
T Consensus 83 ~AE~evasLnRriq 96 (101)
T 3u59_A 83 DAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 23344566666655
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.52 E-value=0.14 Score=54.32 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=9.5
Q ss_pred hhhHHHHHHHHHHHHhhccc
Q 003431 797 DQKDQIEEKMKVVLSSMFSS 816 (820)
Q Consensus 797 DQKEAIQdQVKlLkKEL~s~ 816 (820)
.+..++..++|.+...+..-
T Consensus 565 ~e~~~~~~~~~~l~~~~~~~ 584 (597)
T 3oja_B 565 QETSLKRQKVKQLEAKKNRN 584 (597)
T ss_dssp HHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 33345555666665555443
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=93.95 E-value=0.16 Score=59.94 Aligned_cols=46 Identities=11% Similarity=0.167 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAIS 709 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRa 709 (820)
+++.++..++..+..+.+.+..+..++..++.++..+..++..++.
T Consensus 861 ~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~ 906 (1184)
T 1i84_S 861 AKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETE 906 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555444444433
No 8
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.86 E-value=0.78 Score=40.70 Aligned_cols=92 Identities=8% Similarity=0.202 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVD 742 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeE 742 (820)
+.||+||..+..+......+-...-.+++....++..+-..+.+|.-+++.+...++.-...+...+..|..-.+ ...
T Consensus 5 daIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek--~~~ 82 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEE--NAA 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 457777777777766666666666666666666666666666666666666666665555444444444433222 112
Q ss_pred hHHHHHHhhhhhhh
Q 003431 743 DIDGSIRNMEHRIA 756 (820)
Q Consensus 743 EIDarIKsLEyRIQ 756 (820)
+-++.++.|..|||
T Consensus 83 ~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 83 KAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 22333555555554
No 9
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=93.33 E-value=0.27 Score=58.00 Aligned_cols=53 Identities=8% Similarity=0.191 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003431 666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESL 718 (820)
Q Consensus 666 KAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~el 718 (820)
..+|..++.++.++.+....+...+..++.++..+..++..++.+++..+..+
T Consensus 856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l 908 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY 908 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444444444444444444444444444444444444333
No 10
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=92.07 E-value=0.8 Score=40.32 Aligned_cols=58 Identities=14% Similarity=0.294 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 663 ENLREQIKAAQS-------KVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKS 720 (820)
Q Consensus 663 EkLKAKIDeAQk-------EIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldE 720 (820)
++|.+||+.|-. +|..+++....+..+...+++.|..|..+...|+++...++..++.
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788877777 4444555555555555555555555554444444444444444333
No 11
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=91.83 E-value=0.41 Score=53.53 Aligned_cols=74 Identities=11% Similarity=0.103 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHH----------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAE----------KLE-AAISDERSARESLKSKRQEIDSVQSR 731 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIe----------QLK-ALRaE~RqlR~eldEKRKELdpLQEa 731 (820)
-.+...|..+.++++.+.+.|..+..-.+.+...++.-+. |+- .|+.++.-++..++..++.|+.||..
T Consensus 60 rDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsn 139 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKN 139 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888888888887776655555433322222 222 44444445555555555555555555
Q ss_pred HHHhh
Q 003431 732 INMMK 736 (820)
Q Consensus 732 L~KLR 736 (820)
|+++|
T Consensus 140 Ledq~ 144 (562)
T 3ghg_A 140 VRAQL 144 (562)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.32 E-value=1.2 Score=47.32 Aligned_cols=40 Identities=15% Similarity=0.207 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAE 702 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIe 702 (820)
+.+.+++.+++.+|+++++........++..+.+..+.+.
T Consensus 452 e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~ 491 (597)
T 3oja_B 452 EQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLR 491 (597)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4455667777777777766666666665555555444433
No 13
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=89.95 E-value=2.4 Score=37.46 Aligned_cols=60 Identities=17% Similarity=0.397 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 671 AAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQS 730 (820)
Q Consensus 671 eAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQE 730 (820)
++|-.++.-.+++..|.+++.+.|+....+..+|+....+++.+...+..++++|+.||.
T Consensus 14 eLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455555555667789999999999999999999999999999998888888888887653
No 14
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=89.46 E-value=3.5 Score=45.42 Aligned_cols=91 Identities=10% Similarity=0.173 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhcC
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQ-----SRINMMKNA 738 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQ-----EaL~KLRNA 738 (820)
.++..|++|...++.+.+.-......++.++........++..+....+++...+++++..++.+. ..|+.|+.
T Consensus 97 ~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~- 175 (464)
T 1m1j_B 97 TVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRA- 175 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-
T ss_pred hhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH-
Confidence 377778888888888877766667777777777777777887777777777777777666555333 23444442
Q ss_pred CChHhHHHHHHhhhhhhh
Q 003431 739 ISVDDIDGSIRNMEHRIA 756 (820)
Q Consensus 739 SSeEEIDarIKsLEyRIQ 756 (820)
-.+.+..+|..|+..+.
T Consensus 176 -~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 176 -VIDSLHKKIQKLENAIA 192 (464)
T ss_dssp -HHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHH
Confidence 23455555666655543
No 15
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=88.99 E-value=8.6 Score=34.89 Aligned_cols=52 Identities=13% Similarity=0.209 Sum_probs=42.5
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 003431 658 PRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAIS 709 (820)
Q Consensus 658 PRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRa 709 (820)
|.-+.+-..+.|..|+.+|..++..|..+..++...+....+++.+++.-.+
T Consensus 11 ~~~~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~ 62 (119)
T 3ol1_A 11 MSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEML 62 (119)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 6777888889999999999999999999999988888888888777765443
No 16
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.80 E-value=5.3 Score=52.60 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=27.2
Q ss_pred HHHHHHHHHHh----hcccchhHHHHhhhhhHHHHHHHHHHHHhhc
Q 003431 773 KQLKQRREQIS----SSIGEHDEVQLAFDQKDQIEEKMKVVLSSMF 814 (820)
Q Consensus 773 KQLKkTREKVi----ANAAmQAKIQdSLDQKEAIQdQVKlLkKEL~ 814 (820)
++|++.+.++. +.+..|++.++++.+|+.++++++.....|.
T Consensus 2028 ~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~ 2073 (3245)
T 3vkg_A 2028 LKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD 2073 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443 2345667777788888888888887776654
No 17
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=88.14 E-value=6.4 Score=42.73 Aligned_cols=84 Identities=12% Similarity=0.091 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLE-----------AAISDERSARESLKSKRQEIDSVQSR 731 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLK-----------ALRaE~RqlR~eldEKRKELdpLQEa 731 (820)
-.++.+|+.|...|..+.+.-..+..-++.+....+.-+.+.+ .|+.++.-++..++.....|+.||..
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~ 142 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKN 142 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4588899999999888877777666666665555554444444 34444444444444444445555554
Q ss_pred HHHhhcCCChHhHHHHHHhhhhhh
Q 003431 732 INMMKNAISVDDIDGSIRNMEHRI 755 (820)
Q Consensus 732 L~KLRNASSeEEIDarIKsLEyRI 755 (820)
|+. +-.+|++||-.|
T Consensus 143 l~~---------q~~kiqRLE~~I 157 (390)
T 1deq_A 143 VRD---------QLVDMKRLEVDI 157 (390)
T ss_pred HHH---------HHHHHHHHHHHH
Confidence 444 444566666555
No 18
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=87.95 E-value=5.7 Score=38.90 Aligned_cols=58 Identities=12% Similarity=0.256 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHH--HHHHhhhhhhh
Q 003431 699 EYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDID--GSIRNMEHRIA 756 (820)
Q Consensus 699 ELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEID--arIKsLEyRIQ 756 (820)
+|..++.+|..+.+..+..+..-..+.+.|++.|..|-+-.+.=+|| .+++.|+.+++
T Consensus 94 elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~e 153 (168)
T 3o0z_A 94 DLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLE 153 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666666665555322333444 66666665554
No 19
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=85.45 E-value=14 Score=31.41 Aligned_cols=72 Identities=8% Similarity=0.222 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KL 735 (820)
.|++||..+..+.......-.....+++....++..+-..+.+|.-.++.+...++.....+...+..|...
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888877777777666677777777777777777777777777777777766666666655555443
No 20
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=85.39 E-value=7.7 Score=46.14 Aligned_cols=29 Identities=28% Similarity=0.224 Sum_probs=16.1
Q ss_pred hhHHHHhhhhhhhccCCCCchhhhhhhhcc
Q 003431 506 LVCKEVLENARIQFTGGGSDDQAHKEVKEK 535 (820)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (820)
|-|--|||+.||.=.| -.....+.+...+
T Consensus 682 Lr~~GvlE~iri~r~G-yp~R~~~~eF~~R 710 (1080)
T 2dfs_A 682 LRACGVLETIRISAAG-FPSRWTYQEFFSR 710 (1080)
T ss_dssp HHTTTHHHHHHHHTTS-CCEEEEHHHHHHH
T ss_pred HhhcccHHHHhHHhcC-CCchhhHHHHHHH
Confidence 5566678888876443 3333344444443
No 21
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=85.25 E-value=18 Score=40.53 Aligned_cols=121 Identities=18% Similarity=0.240 Sum_probs=73.4
Q ss_pred HHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHh
Q 003431 665 LREQIKAAQ-SKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDD 743 (820)
Q Consensus 665 LKAKIDeAQ-kEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEE 743 (820)
-.+||-.+. .+-.+++|+-..++.++.+.-+.++.+++++.++..+.+.++..+..++++-..+..++ .+
T Consensus 339 ~~Kki~naevae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~---------a~ 409 (602)
T 1cii_A 339 GDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQL---------SG 409 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH
T ss_pred hHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------hh
Confidence 334444443 34455665555567777777777777777888888887777777777777777765555 34
Q ss_pred HHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHhhcccc
Q 003431 744 IDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSSMFSSF 817 (820)
Q Consensus 744 IDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKEL~s~f 817 (820)
++++|+ |+|+-..|.++++.. |..-+..=.+|-+-+| +|.|.|.++|-..|
T Consensus 410 ~~~KiA--------------E~KrK~dE~~aIKDA---VkfTAdFykkIsEkyG------eKykkIAkELAe~f 460 (602)
T 1cii_A 410 INQKIA--------------EEKRKQDELKATKDA---INFTTEFLKSVSEKYG------AKAEQLAREMAGQA 460 (602)
T ss_dssp HHHHHH--------------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHC------THHHHHHHHHHHTT
T ss_pred hhhHHH--------------HHHHhhhHHHHHHHH---HHHHHHHHHHHHHHHH------HHHHHHHHHHHHhc
Confidence 444443 444445566666655 3333333334444444 67777777776554
No 22
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=85.25 E-value=12 Score=32.45 Aligned_cols=37 Identities=8% Similarity=0.331 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChHhHHHHHHhhhhhhh
Q 003431 718 LKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIA 756 (820)
Q Consensus 718 ldEKRKELdpLQEaL~KLRNASSeEEIDarIKsLEyRIQ 756 (820)
+.....++..++..+..|+. ...+++.+|+.|+.++.
T Consensus 66 i~~~~~~l~~l~~~i~~l~~--~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLID--RKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 34444455555555555552 34556666666666555
No 23
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=84.81 E-value=23 Score=32.26 Aligned_cols=70 Identities=11% Similarity=0.341 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHHHHHhhhhhhhc
Q 003431 686 IRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAH 757 (820)
Q Consensus 686 IieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEIDarIKsLEyRIQH 757 (820)
+..++......|.+|..+...|.++...+...+..-+.-+....+.+.+|. ....+|+..|+.|+-|+.-
T Consensus 25 lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~--~~k~eLe~~l~el~~rlee 94 (129)
T 2fxo_A 25 LKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLI--KNKIQLEAKVKEMNKRLED 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555555444443333344444444 2445667777777666543
No 24
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=84.50 E-value=19 Score=33.77 Aligned_cols=97 Identities=11% Similarity=0.118 Sum_probs=51.6
Q ss_pred eEEeccCCCChHHHHHHHHHHHHHHHHhhh---------HHHHHHHHH------HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003431 653 FLVKVPRYDDENLREQIKAAQSKVDEKTRS---------RDAIRDDIQ------TIRASYKEYAEKLEAAISDERSARES 717 (820)
Q Consensus 653 YfVRVPRYDDEkLKAKIDeAQkEIqKLNQa---------R~aIieEIK------AKRAERsELIeQLKALRaE~RqlR~e 717 (820)
|-+.-|- +.+-|.+--..++..|..+.+. |.+|..++. ..+.+...|..+++.+..+...++..
T Consensus 19 Y~i~g~e-~ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~e 97 (138)
T 3hnw_A 19 IKLGGYE-SEEYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHE 97 (138)
T ss_dssp EEECSCS-CHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCC-cHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566552 2345666556666676666533 555544443 34455555555665555555555555
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChHhHHHHHHhhh
Q 003431 718 LKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNME 752 (820)
Q Consensus 718 ldEKRKELdpLQEaL~KLRNASSeEEIDarIKsLE 752 (820)
+.+.+.+++.+.+.+.+++. -..++..+|..||
T Consensus 98 l~~~~~k~e~~~~e~~~l~~--~~~~l~~~~~~le 130 (138)
T 3hnw_A 98 LIAAQIKAESSAKEIKELKS--EINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 55555555555555555552 2334444455554
No 25
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=84.30 E-value=5.3 Score=35.01 Aligned_cols=64 Identities=16% Similarity=0.221 Sum_probs=37.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 673 QSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 673 QkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
.+.++.+-.+...+-..++.+..++.+-+.+=..++.+.+.+...++-|+.||-.|++.|.+|-
T Consensus 12 ~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~ 75 (79)
T 3cvf_A 12 QQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARLA 75 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 3334444333344555555555555555555555666666666777777777777777777664
No 26
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=84.25 E-value=11 Score=34.98 Aligned_cols=60 Identities=13% Similarity=0.247 Sum_probs=38.0
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 658 PRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSK 721 (820)
Q Consensus 658 PRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEK 721 (820)
.+-.-+.|++++..|++.+.++......+..++..++. -.+++.-|++|..-|+.-|..-
T Consensus 22 ~~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~----~lE~I~vLkaQv~IY~~DF~aE 81 (110)
T 2v4h_A 22 ASMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI----VMETVPVLKAQADIYKADFQAE 81 (110)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHccc
Confidence 33445678999999999988877666666665555443 3355555566655555544443
No 27
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=83.63 E-value=3.9 Score=45.04 Aligned_cols=33 Identities=9% Similarity=0.230 Sum_probs=14.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 687 RDDIQTIRASYKEYAEKLEAAISDERSARESLK 719 (820)
Q Consensus 687 ieEIKAKRAERsELIeQLKALRaE~RqlR~eld 719 (820)
..++.++-.+|++++.+++.|++++..+-..+.
T Consensus 69 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~ 101 (501)
T 1wle_A 69 LPGIISTWQELRQLREQIRSLEEEKEAVTEAVR 101 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443333
No 28
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=82.88 E-value=9.5 Score=33.07 Aligned_cols=9 Identities=11% Similarity=0.287 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 003431 726 DSVQSRINM 734 (820)
Q Consensus 726 dpLQEaL~K 734 (820)
..++..+..
T Consensus 34 ~~l~~~l~~ 42 (112)
T 1l8d_A 34 GDLKTAIEE 42 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 29
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=82.82 E-value=17 Score=32.18 Aligned_cols=52 Identities=21% Similarity=0.378 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003431 684 DAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (820)
Q Consensus 684 ~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KL 735 (820)
.+|-.+|+.+|.+......+...+..+.+.+.....++-.++.+|+..+.-+
T Consensus 5 daIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~l 56 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVT 56 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999999999999999999988877544
No 30
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=82.69 E-value=14 Score=31.95 Aligned_cols=51 Identities=12% Similarity=0.197 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 686 IRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 686 IieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
+-..++.+..++.+-+.+=..++.+.+.+...++-|+.||-.|++.|.+|-
T Consensus 19 Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL~ 69 (72)
T 3cve_A 19 LEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKLL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 444555555555555555555666666666777777778777777777664
No 31
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=81.69 E-value=4.1 Score=44.06 Aligned_cols=68 Identities=15% Similarity=0.212 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIR---ASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKR---AERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL 732 (820)
+..+-..++.+++.++..|.++..+|..++ .+..+|+++++.|+.+.+.+...+.+..+++..+...|
T Consensus 36 l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 106 (455)
T 2dq0_A 36 LDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRL 106 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455566666777777777777777776644 33456666666666666666655555555554444433
No 32
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=81.39 E-value=5.9 Score=41.21 Aligned_cols=15 Identities=27% Similarity=0.902 Sum_probs=7.1
Q ss_pred hHhHHHHHHhhhhhh
Q 003431 741 VDDIDGSIRNMEHRI 755 (820)
Q Consensus 741 eEEIDarIKsLEyRI 755 (820)
++|++..|..|+++|
T Consensus 445 ~~~~~~~~~~~~~~~ 459 (471)
T 3mq9_A 445 VEELEGEITTLNHKL 459 (471)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 33
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=81.24 E-value=18 Score=31.95 Aligned_cols=64 Identities=9% Similarity=0.227 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 669 IKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 669 IDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL 732 (820)
++.|...|+..-..-.-+..++..+|.+...|..+...+++....++.....-+.|...-++.|
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666665555444455555555555555555555544444444444444444444444443
No 34
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=80.43 E-value=19 Score=31.82 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003431 669 IKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARES 717 (820)
Q Consensus 669 IDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~e 717 (820)
+..++.++..+.+.-..+..++..+..++..+..+|.++..+.+.+...
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~e 54 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQE 54 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhH
Confidence 4677777777777777888888888877777777777777666665543
No 35
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=79.86 E-value=7.4 Score=42.86 Aligned_cols=25 Identities=4% Similarity=0.384 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH
Q 003431 668 QIKAAQSKVDEKTRSRDAIRDDIQT 692 (820)
Q Consensus 668 KIDeAQkEIqKLNQaR~aIieEIKA 692 (820)
+...++.+++.++..|.++..+|..
T Consensus 78 ~~r~~~~~~~~l~~~rn~~sk~i~~ 102 (501)
T 1wle_A 78 ELRQLREQIRSLEEEKEAVTEAVRA 102 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555444443
No 36
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=79.54 E-value=10 Score=35.18 Aligned_cols=22 Identities=5% Similarity=0.068 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhHH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRD 684 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~ 684 (820)
.++++.|+.++.-+..+.+.|.
T Consensus 34 ~EVq~sl~~l~~l~~~w~~l~~ 55 (130)
T 4dnd_A 34 GEVQKAVNTARGLYQRWCELLQ 55 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 5778888888877777655443
No 37
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=79.50 E-value=20 Score=47.45 Aligned_cols=18 Identities=44% Similarity=0.735 Sum_probs=9.7
Q ss_pred CCCCCccc--ccceEEEEec
Q 003431 21 LPNGNAIA--DSSCVFVEVS 38 (820)
Q Consensus 21 ~~~~~~~~--~~~~~~~~~~ 38 (820)
||||..|. +.-.++.||.
T Consensus 1016 L~nGErI~l~~~~~liFEv~ 1035 (3245)
T 3vkg_A 1016 LPNGERLALPNNVRVMFEVQ 1035 (3245)
T ss_dssp CTTSCCEECCTTEEEEEEES
T ss_pred cCCCCeeecCCCCEEEEEec
Confidence 67777664 3333445553
No 38
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=78.55 E-value=22 Score=33.20 Aligned_cols=55 Identities=22% Similarity=0.268 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003431 681 RSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (820)
Q Consensus 681 QaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KL 735 (820)
+.-..+...+..+..+...|..++..+..+...++..+.+-+++++.|+..+.+|
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444555555555555555555555555555555555555444
No 39
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=78.24 E-value=15 Score=40.88 Aligned_cols=31 Identities=10% Similarity=0.132 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIR 694 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKAKR 694 (820)
.++.+|+.|.+.|..+.+.-..+..-++.+.
T Consensus 62 dv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~ 92 (491)
T 1m1j_A 62 NYSQRIDNIRQQLADSQNKYKTSNRVIVETI 92 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 4777888888877777555444443333333
No 40
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=77.49 E-value=3.6 Score=43.93 Aligned_cols=63 Identities=11% Similarity=0.257 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQT-IRASYKEYAEKLEAAISDERSARESLKSKRQEIDS 727 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKA-KRAERsELIeQLKALRaE~RqlR~eldEKRKELdp 727 (820)
+..+-..++.+++.++..|.++..+|.. ...+..+|+++++.|+.+.+.+...+.+..+++..
T Consensus 33 ~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 33 LDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666553 22334455555555555555544444444444433
No 41
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=76.69 E-value=9 Score=33.20 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=31.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 003431 691 QTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKN 737 (820)
Q Consensus 691 KAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRN 737 (820)
+.++.-+....++|+......+.+...+.+|-.+++.||..|.|+|+
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33334444444445555555666667888888888888888888874
No 42
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=76.65 E-value=7.3 Score=42.96 Aligned_cols=66 Identities=11% Similarity=0.123 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRA---SYKEYAEKLEAAISDERSARESLKSKRQEIDSVQS 730 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRA---ERsELIeQLKALRaE~RqlR~eldEKRKELdpLQE 730 (820)
+.++...++.+++.++..|.++..+|..++. +..+++++++.|+.+++.+...+.+..+++..+..
T Consensus 38 ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 38 EYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKIN 106 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666677777766666654432 24455555655555555555555554444444333
No 43
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=76.45 E-value=31 Score=34.22 Aligned_cols=70 Identities=6% Similarity=0.172 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhhHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhh
Q 003431 667 EQIKAAQSKVDEKTRSRDAI----RDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQE----IDSVQSRINMMK 736 (820)
Q Consensus 667 AKIDeAQkEIqKLNQaR~aI----ieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKE----LdpLQEaL~KLR 736 (820)
.++.+++.+++.+...-..+ =..|.....+.+.|..++..|..+...+|..+..-..+ +..|+..|..||
T Consensus 24 q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~ 101 (189)
T 2v71_A 24 QSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTR 101 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555554443333 22233333444455555555555555555555444444 444444444444
No 44
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=75.90 E-value=39 Score=29.63 Aligned_cols=53 Identities=19% Similarity=0.345 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 684 DAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 684 ~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
.+|-.+|+.+|.+......+...+..+.+.+......+-.++..|+..+.-+-
T Consensus 5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE 57 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999888888888888887775444
No 45
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=75.45 E-value=4.6 Score=39.25 Aligned_cols=18 Identities=11% Similarity=0.403 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003431 717 SLKSKRQEIDSVQSRINM 734 (820)
Q Consensus 717 eldEKRKELdpLQEaL~K 734 (820)
.+++..+|+..|+..|..
T Consensus 114 kI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 46
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=73.99 E-value=48 Score=31.58 Aligned_cols=116 Identities=11% Similarity=0.166 Sum_probs=50.6
Q ss_pred eEEeccCCCChHHHHHHHHHHHHHHHHhhhHHHHHH---------HHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 653 FLVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRD---------DIQTI--RASYKEYAEKLEAAISDERSARESLKSK 721 (820)
Q Consensus 653 YfVRVPRYDDEkLKAKIDeAQkEIqKLNQaR~aIie---------EIKAK--RAERsELIeQLKALRaE~RqlR~eldEK 721 (820)
||---++|.-+++-..++.+++---.-...|..|.. .++.+ |+.-..+..+++.....+..|...+...
T Consensus 15 ~~~~~~p~~~~elik~L~~le~sassDa~vrq~Ia~LP~eVsd~s~l~klkDk~~~e~l~~~veeA~~~L~eYn~rL~~E 94 (152)
T 4fla_A 15 YFQGAGPLLTEELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEYNGRLAAE 94 (152)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGTCGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHcCCccccCHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566666666666644444444444321 12221 2333455555555555555555555555
Q ss_pred HHHHHHHHHHHHHhhcCCChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHH
Q 003431 722 RQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRRE 780 (820)
Q Consensus 722 RKELdpLQEaL~KLRNASSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTRE 780 (820)
.++-+.|...|.... ...+..+..-..-|+|=|+-+..++++++.-+
T Consensus 95 ~~dR~~L~~~L~~~~------------~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~ 141 (152)
T 4fla_A 95 LEDRRQLARMLVEYT------------QNQKDVLSEKEKKLEEYKQKLARVTQVRKELK 141 (152)
T ss_dssp HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555443322 12222222222334455555555555555433
No 47
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=72.48 E-value=18 Score=36.13 Aligned_cols=71 Identities=8% Similarity=0.203 Sum_probs=48.0
Q ss_pred ChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 662 DEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL 732 (820)
+..++.+++.++..|+++...-..+..++..+..+...|+.|+.+++++.+.+...+...+..+.-....+
T Consensus 8 K~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~ 78 (190)
T 4emc_A 8 KNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLY 78 (190)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHH
Confidence 34688899999999999999999999999999999999999999999999888777765544444333333
No 48
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=71.19 E-value=24 Score=35.19 Aligned_cols=27 Identities=7% Similarity=0.058 Sum_probs=19.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhhHHH
Q 003431 659 RYDDENLREQIKAAQSKVDEKTRSRDA 685 (820)
Q Consensus 659 RYDDEkLKAKIDeAQkEIqKLNQaR~a 685 (820)
++|++.+..++..++.++...+.....
T Consensus 62 ~ld~~~~~~~l~~~~a~l~~~~a~l~~ 88 (369)
T 4dk0_A 62 EIDSTTQINTLNTRKAALASYQAQLVA 88 (369)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888888888888887655444333
No 49
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=71.06 E-value=20 Score=32.01 Aligned_cols=31 Identities=13% Similarity=0.349 Sum_probs=25.9
Q ss_pred ChHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 003431 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQT 692 (820)
Q Consensus 662 DEkLKAKIDeAQkEIqKLNQaR~aIieEIKA 692 (820)
.-.|..||+.++++|++..+.|.+|..-+..
T Consensus 17 kkkL~~Ki~el~~ei~ke~~~regl~Km~~v 47 (98)
T 2ke4_A 17 RKRLQQQLEERSRELQKEVDQREALKKMKDV 47 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3479999999999999999999988655554
No 50
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=70.31 E-value=42 Score=33.27 Aligned_cols=34 Identities=9% Similarity=0.307 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYK 698 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERs 698 (820)
+.+.|.++.+.+..+...-..+..++...|.+..
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~ 80 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLE 80 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554444444444444444333
No 51
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=69.91 E-value=62 Score=29.30 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=18.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 695 ASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 695 AERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
.++..+..+++.++.....+|..++.....-..+...+..||
T Consensus 34 ~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lr 75 (119)
T 3ol1_A 34 NDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFR 75 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444444444443333333334444444
No 52
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=69.81 E-value=25 Score=30.82 Aligned_cols=58 Identities=19% Similarity=0.393 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEID 726 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELd 726 (820)
++.++...+.+|+.+++.+..+ ++=+.++..++.+|+.=.++....-..+..|.+||.
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL----~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDL----KKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666665544333 333555555555555555554444455555555554
No 53
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=69.15 E-value=47 Score=29.50 Aligned_cols=59 Identities=19% Similarity=0.312 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 670 KAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 670 DeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL 732 (820)
..+..-|+++|..|+ ++-.+-.+|..|-.+|++-++++..++..+..|-.|++.||..|
T Consensus 19 ~~~E~L~qEi~~Lr~----kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 19 RKAEELLQELRHLKI----KVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334444444544444 44456788888888888888888888888888888888888876
No 54
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=69.03 E-value=67 Score=29.04 Aligned_cols=72 Identities=11% Similarity=0.184 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKE----YAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsE----LIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
+=.|-.++.+++...++.+..+-..++.+..+..+ -..+++.-..+...++..+..+..|+..|+..+..+-
T Consensus 6 LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~ 81 (107)
T 2no2_A 6 LLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSA 81 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677777777777777766666665544444 2444555556666777788888888888888776665
No 55
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=68.60 E-value=28 Score=33.84 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYA-------EKLEAAISDERSARESLKSKRQ 723 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELI-------eQLKALRaE~RqlR~eldEKRK 723 (820)
++=+++|+.+.++ ....+..++.++.++|.++..|. +++++|..+...+|..+...|-
T Consensus 70 ~EQq~ql~~I~~e---~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 70 TEQQATAQKIYDD---YYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444333 33334445555555555555553 4555555555555555544443
No 56
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=68.28 E-value=16 Score=41.08 Aligned_cols=40 Identities=15% Similarity=0.379 Sum_probs=23.5
Q ss_pred hHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHh
Q 003431 741 VDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQIS 783 (820)
Q Consensus 741 eEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKVi 783 (820)
.++|.++...+..+|+. ++.....||++|....+.=....
T Consensus 607 ~~eL~k~~~~~~~~i~~---~~~~Q~~ll~~i~~~~~~f~~~~ 646 (704)
T 2xs1_A 607 VTELDRVYGGLTTKVQE---SLKKQEGLLKNIQVSHQEFSKMK 646 (704)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555544 56677788888876665443333
No 57
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=68.11 E-value=18 Score=28.64 Aligned_cols=36 Identities=11% Similarity=0.213 Sum_probs=15.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 689 DIQTIRASYKEYAEKLEAAISDERSARESLKSKRQE 724 (820)
Q Consensus 689 EIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKE 724 (820)
.+..++.++.++..+++.+...++.+|..+..++.+
T Consensus 20 ~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 20 KCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444333
No 58
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=67.95 E-value=31 Score=30.41 Aligned_cols=47 Identities=6% Similarity=0.146 Sum_probs=30.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 673 QSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLK 719 (820)
Q Consensus 673 QkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eld 719 (820)
-++|+.+...-.++.+-..++---++.||.+++.|..++..++.++.
T Consensus 8 gkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~ 54 (77)
T 2w83_C 8 GREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELE 54 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34555555555566666666677777888888888877776665443
No 59
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=67.41 E-value=44 Score=36.26 Aligned_cols=52 Identities=12% Similarity=0.161 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHHHHHhhhhhh
Q 003431 702 EKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRI 755 (820)
Q Consensus 702 eQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEIDarIKsLEyRI 755 (820)
.+.+.+..++..+...+.....++..|+..|..++ .....|..+|..|+.+.
T Consensus 84 q~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~--~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 84 QKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNS--NKITQLKQKIAQLESHC 135 (409)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHh
Confidence 33444444444444444444455555555554443 13344444444444433
No 60
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=67.15 E-value=4.1 Score=43.55 Aligned_cols=68 Identities=12% Similarity=0.250 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIR---ASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKR---AERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL 732 (820)
+.++-..++.+++.++..|.++..+|..++ .+..+++++++.|+.+.+.+...+.+..+++..+...|
T Consensus 35 ~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 105 (425)
T 2dq3_A 35 LDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWI 105 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444555556666666666666666665432 23445566666666666665555555555554444433
No 61
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=67.05 E-value=33 Score=30.27 Aligned_cols=72 Identities=10% Similarity=0.186 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHhHHHHHHHHHH-HHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003431 665 LREQIKAAQSKVDEKT----RSRDAIRDDIQTIRASYKEYAEKLEA-AIS----DERSARESLKSKRQEIDSVQSRINMM 735 (820)
Q Consensus 665 LKAKIDeAQkEIqKLN----QaR~aIieEIKAKRAERsELIeQLKA-LRa----E~RqlR~eldEKRKELdpLQEaL~KL 735 (820)
...-+..+...|..+. ..|.+.+.++...-.+..+|+.||.- +++ .+..+...++.=+.+++.|+..++++
T Consensus 14 f~~l~~~i~~kl~~i~~~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~ 93 (102)
T 1vcs_A 14 FAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRS 93 (102)
T ss_dssp HHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555443 35666777777777888888888772 221 34455566666667777777777777
Q ss_pred h
Q 003431 736 K 736 (820)
Q Consensus 736 R 736 (820)
+
T Consensus 94 ~ 94 (102)
T 1vcs_A 94 R 94 (102)
T ss_dssp H
T ss_pred H
Confidence 6
No 62
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=66.56 E-value=17 Score=39.43 Aligned_cols=31 Identities=6% Similarity=0.233 Sum_probs=13.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003431 688 DDIQTIRASYKEYAEKLEAAISDERSARESL 718 (820)
Q Consensus 688 eEIKAKRAERsELIeQLKALRaE~RqlR~el 718 (820)
.++.++-.+|+.++.+++.|+++++.+-..+
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i 61 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEI 61 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333
No 63
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=65.49 E-value=21 Score=28.98 Aligned_cols=41 Identities=12% Similarity=0.318 Sum_probs=32.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003431 695 ASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (820)
Q Consensus 695 AERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KL 735 (820)
.+..++..++..|.+++..+-..+.+-+.+|..|++.|.+|
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456778888888888888888888888888888888776
No 64
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=64.95 E-value=19 Score=39.76 Aligned_cols=30 Identities=3% Similarity=0.054 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIR 694 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKR 694 (820)
+.++-..++.+++.++..|.++..+|..++
T Consensus 42 ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~ 71 (484)
T 3lss_A 42 ADKKWRRTQFLTEASKKLINICSKAVGAKK 71 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555666666666666666665443
No 65
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=64.90 E-value=15 Score=32.20 Aligned_cols=52 Identities=17% Similarity=0.285 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 682 SRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN 733 (820)
Q Consensus 682 aR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~ 733 (820)
.|..+..++++...+..+|..++..|..++...+...+..+.|++.+.+.|+
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld 58 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLD 58 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566778889999999999999999999999999999888899888888773
No 66
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=64.88 E-value=39 Score=38.23 Aligned_cols=40 Identities=8% Similarity=0.225 Sum_probs=19.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 693 IRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 693 KRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL 732 (820)
+|.++..|..++..-.++++.||..++.-+.+|+.|--.|
T Consensus 115 LRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444555555555555555555555544
No 67
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=64.66 E-value=40 Score=33.50 Aligned_cols=78 Identities=15% Similarity=0.316 Sum_probs=42.7
Q ss_pred EeccC-CCChH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH
Q 003431 655 VKVPR-YDDEN-LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDER--------SARESLKSKRQE 724 (820)
Q Consensus 655 VRVPR-YDDEk-LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~R--------qlR~eldEKRKE 724 (820)
+.+++ +|+.. |..-++-+-..+..+.+.=..+..+...+....+.+.+|++.+..... .+...+++|+..
T Consensus 111 i~L~~~~d~~e~i~elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~K 190 (213)
T 1ik9_A 111 FNLEKVENPAEVIRELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTK 190 (213)
T ss_dssp EECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44444 44332 244455544444444443344445555555555555566655554444 445688888888
Q ss_pred HHHHHHHH
Q 003431 725 IDSVQSRI 732 (820)
Q Consensus 725 LdpLQEaL 732 (820)
|+.||+.|
T Consensus 191 IR~lq~~L 198 (213)
T 1ik9_A 191 IRSLHNKL 198 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888544
No 68
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=64.55 E-value=30 Score=36.31 Aligned_cols=40 Identities=10% Similarity=0.151 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 697 YKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 697 RsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
+..|+.+|..++.++..++..+..|+.++..|+..+..-+
T Consensus 304 ~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~ 343 (406)
T 4dyl_A 304 VESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEE 343 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666777778888888899999999999988887776
No 69
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=64.54 E-value=60 Score=27.90 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=14.0
Q ss_pred ChHhHHHHHHhhhhhhhcCCCChHHHHHHHHH
Q 003431 740 SVDDIDGSIRNMEHRIAHETLPLKEEKQIIRE 771 (820)
Q Consensus 740 SeEEIDarIKsLEyRIQHESLSLkEEKKLLKE 771 (820)
..+.|+..|+.|+.++..-.-.+.+=|.-|++
T Consensus 78 ~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 78 KIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443333
No 70
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=64.49 E-value=54 Score=27.75 Aligned_cols=52 Identities=21% Similarity=0.344 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 685 AIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 685 aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
+|-.+++.++.+......++..+..+.+.........-.++..|+..+.-|-
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE 54 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTE 54 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4667788888888888888888888888888888888888888877765544
No 71
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=64.48 E-value=1.7e+02 Score=33.08 Aligned_cols=18 Identities=22% Similarity=0.591 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 003431 766 KQIIREIKQLKQRREQIS 783 (820)
Q Consensus 766 KKLLKEIKQLKkTREKVi 783 (820)
|.+|.++..|++.|..+.
T Consensus 559 ~~~l~~l~~l~~~R~~~~ 576 (704)
T 2xs1_A 559 KSLLSNLDEVKKEREGLE 576 (704)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667777777777777664
No 72
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=64.43 E-value=73 Score=27.80 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=30.0
Q ss_pred ChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 003431 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS 696 (820)
Q Consensus 662 DEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAE 696 (820)
-..++++||.++.+|-+|-..|..+..++...|..
T Consensus 7 L~~lR~~ID~iD~~L~~LL~~R~~~~~~v~~~K~~ 41 (109)
T 1ecm_A 7 LLALREKISALDEKLLALLAERRELAVEVGKAKLL 41 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999998888877743
No 73
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=64.29 E-value=23 Score=30.50 Aligned_cols=39 Identities=8% Similarity=0.132 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 698 KEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 698 sELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
.+++.+|..+..+...+...+.....+++.+..++..|.
T Consensus 9 Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~ 47 (117)
T 2zqm_A 9 QAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIE 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666655555555555555555554
No 74
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=64.23 E-value=62 Score=29.31 Aligned_cols=70 Identities=14% Similarity=0.267 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKS-------KRQEIDSVQSRINMM 735 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldE-------KRKELdpLQEaL~KL 735 (820)
+.|+.++..|.+.+..+...-+.+.+++. ......+++.-|++|..-|+.-|.. -..+.+.|+..+..|
T Consensus 5 ~~L~~~L~~aEeaL~~kq~~id~lke~~~----q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~l 80 (94)
T 3jsv_C 5 EDLRQQLQQAEEALVAKQELIDKLKEEAE----QHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL 80 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46778888888877665444444443333 3333335555555555555544443 333444444444444
Q ss_pred h
Q 003431 736 K 736 (820)
Q Consensus 736 R 736 (820)
+
T Consensus 81 q 81 (94)
T 3jsv_C 81 Q 81 (94)
T ss_dssp H
T ss_pred H
Confidence 4
No 75
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=64.06 E-value=1.3e+02 Score=34.08 Aligned_cols=105 Identities=11% Similarity=0.191 Sum_probs=48.9
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 003431 660 YDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAI 739 (820)
Q Consensus 660 YDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNAS 739 (820)
|---.+..||.+++.+.. -.+.|...+.++..+-. ..|+.++.-.+.--..-....+|++-|..+|+.+...
T Consensus 90 PgE~~~~~Kl~eLE~e~k-~d~~~~khn~~I~~k~g------~~l~~v~~~~~~~~~~e~~e~~q~~~LekAl~s~~~i- 161 (526)
T 3iyk_A 90 PGERGIQAKLKELEDEQR-NELVRLKYNDKIKEKFG------KELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKI- 161 (526)
T ss_pred HhHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH-
Confidence 444568889988888733 33444455555444322 2222222111111112222344555555555555421
Q ss_pred ChHhHHHHHHhhhhhhhcCC-CChHHHHHHHHHHH
Q 003431 740 SVDDIDGSIRNMEHRIAHET-LPLKEEKQIIREIK 773 (820)
Q Consensus 740 SeEEIDarIKsLEyRIQHES-LSLkEEKKLLKEIK 773 (820)
..+=+.+|..|-.-++.++ +-=.+|.++|.+..
T Consensus 162 -~~~e~~~l~~L~~AL~kE~~~Rt~dE~~mi~~yr 195 (526)
T 3iyk_A 162 -LTEEDLQMRRLATALQKEIGERTHAETVMVKEYR 195 (526)
T ss_pred -HHHHHhHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Confidence 1222333555555555444 34456666666543
No 76
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=64.03 E-value=26 Score=30.30 Aligned_cols=49 Identities=8% Similarity=0.144 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 685 AIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN 733 (820)
Q Consensus 685 aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~ 733 (820)
.+..++++...+..+|..++..|..++...+...+..+.|++.+.+.|+
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld 52 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILD 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788888888899999999999999998888888888888888773
No 77
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=64.00 E-value=73 Score=29.43 Aligned_cols=68 Identities=3% Similarity=0.064 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 666 KAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
...|+.|..+|..++..-..| +...+.....|..++..|.+++...|......+.|.+.|+..+..++
T Consensus 14 D~~Ie~Lkreie~lk~ele~l---~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENM---KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777665544333 22233344455566666777777666666666666667777666665
No 78
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=63.99 E-value=80 Score=28.10 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQT 692 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKA 692 (820)
.+.+.++.++.+++.+.+.+..+..++..
T Consensus 5 ~l~~~~q~l~~~~~~l~~~~~~l~~~i~e 33 (133)
T 1fxk_C 5 EIVAQLNIYQSQVELIQQQMEAVRATISE 33 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555655555555555444443
No 79
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=63.55 E-value=51 Score=35.98 Aligned_cols=92 Identities=9% Similarity=0.162 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---H--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS---Y--------KEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAE---R--------sELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL 732 (820)
.++..|++|+..++.+.+.-..+..-++.++.. + ..+...-+.+..+...+...+...-..|+.||..+
T Consensus 35 ~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~ 114 (411)
T 3ghg_C 35 KVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIY 114 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 577888888888888777777766666666632 1 23444445566666667677766666777777766
Q ss_pred HHhhcCCChHhHHHHHHhhhhhhhc
Q 003431 733 NMMKNAISVDDIDGSIRNMEHRIAH 757 (820)
Q Consensus 733 ~KLRNASSeEEIDarIKsLEyRIQH 757 (820)
...++ ...+|...|..|+.+.+.
T Consensus 115 ~~~~~--~i~~L~~~v~~l~~~~~~ 137 (411)
T 3ghg_C 115 NSNNQ--KIVNLKEKVAQLEAQCQE 137 (411)
T ss_dssp HHHHH--HHHHHHHHHHHHHTTSCS
T ss_pred HHHHH--HHHHHHHHHHHHHHHhcc
Confidence 55552 456666667777666554
No 80
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=62.84 E-value=26 Score=34.64 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=17.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhh
Q 003431 659 RYDDENLREQIKAAQSKVDEKTRS 682 (820)
Q Consensus 659 RYDDEkLKAKIDeAQkEIqKLNQa 682 (820)
++|++.+..++..++.++..++..
T Consensus 61 ~ld~~~~~~~~~~~~a~l~~~~a~ 84 (341)
T 3fpp_A 61 VIDPEQAENQIKEVEATLMELRAQ 84 (341)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEChHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888888886655433
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=62.33 E-value=1.5e+02 Score=31.00 Aligned_cols=20 Identities=5% Similarity=0.057 Sum_probs=11.0
Q ss_pred cccchhHHHHhhhhhHHHHH
Q 003431 785 SIGEHDEVQLAFDQKDQIEE 804 (820)
Q Consensus 785 NAAmQAKIQdSLDQKEAIQd 804 (820)
.+.++++.|++..++-.+-.
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~ 484 (487)
T 3oja_A 465 LASANATLQELVVREQNLAS 484 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHhcccHHHHHHHHHHHHHH
Confidence 34455666677665554433
No 82
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=62.25 E-value=43 Score=36.02 Aligned_cols=66 Identities=8% Similarity=0.204 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhhcCCChHhHHHHHHhhhhhhhcCCC--ChHHHHHHHHHHHHHHHHHHHHhhccc
Q 003431 722 RQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETL--PLKEEKQIIREIKQLKQRREQISSSIG 787 (820)
Q Consensus 722 RKELdpLQEaL~KLRNASSeEEIDarIKsLEyRIQHESL--SLkEEKKLLKEIKQLKkTREKViANAA 787 (820)
+.+++.|...+..++.....+.+..++..|+.+|....+ .-+.=+++++|.+.|+..-+....+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~ 75 (365)
T 1gqe_A 8 NNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQ 75 (365)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666556777788888888887776655 444556777777777666444444433
No 83
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=61.99 E-value=58 Score=31.61 Aligned_cols=57 Identities=11% Similarity=0.176 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 668 QIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQE 724 (820)
Q Consensus 668 KIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKE 724 (820)
.|..++.++..+..+-..+-.+++.+..-...++..+-+|..+...+...+..-.+|
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~E 125 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKE 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333444444444433333333333333
No 84
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=61.46 E-value=11 Score=40.23 Aligned_cols=25 Identities=12% Similarity=0.323 Sum_probs=11.8
Q ss_pred HhhhHHHHHHHHHHHHHhHHHHHHH
Q 003431 679 KTRSRDAIRDDIQTIRASYKEYAEK 703 (820)
Q Consensus 679 LNQaR~aIieEIKAKRAERsELIeQ 703 (820)
+-+.|.++..++..+|++|..+..+
T Consensus 33 ~~~~~r~~~~~~~~l~~~~n~~sk~ 57 (421)
T 1ses_A 33 LDREVQELKKRLQEVQTERNQVAKR 57 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555544433
No 85
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=61.43 E-value=42 Score=27.54 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 681 RSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN 733 (820)
Q Consensus 681 QaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~ 733 (820)
+-|.+...=-+.++.+..++..+.+.|..++..++..+..-..|+..|.+.|.
T Consensus 9 rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 9 QNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444456677778888888888888888888888888888888877664
No 86
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=60.73 E-value=26 Score=38.67 Aligned_cols=27 Identities=7% Similarity=0.142 Sum_probs=12.7
Q ss_pred HHhhhHHHHHHHHHHHHHhHHHHHHHH
Q 003431 678 EKTRSRDAIRDDIQTIRASYKEYAEKL 704 (820)
Q Consensus 678 KLNQaR~aIieEIKAKRAERsELIeQL 704 (820)
.+-+.|.++..++..+|++|..+..++
T Consensus 37 ~ld~~~r~~~~~~~~l~~~rn~~sk~i 63 (485)
T 3qne_A 37 AEYKEWVKLRFDLDEHNKKLNSVQKEI 63 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555444443
No 87
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=60.60 E-value=1.4e+02 Score=34.50 Aligned_cols=44 Identities=16% Similarity=0.366 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHhhc-ccccc
Q 003431 770 REIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSSMF-SSFLI 819 (820)
Q Consensus 770 KEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKEL~-s~f~i 819 (820)
++|+.|+..+.++. +.. +-+. ..+..+++++..|-+.|- |+|.|
T Consensus 275 qql~~l~~l~~~~~-~~~--~p~~---~~~~~l~~~~~~ll~~Lv~ssfVV 319 (683)
T 1yvl_A 275 QQLKKLEELEQKYT-YEH--DPIT---KNKQVLWDRTFSLFQQLIQSSFVV 319 (683)
T ss_dssp HHHHHHHHHHHHCC-CTT--CHHH---HHHHHHHHHHHHHHHHHHHHTEEE
T ss_pred HHHHHHHHHHhhcC-CCC--Cccc---cchHHHHHHHHHHHHHHHHhheee
Confidence 45666666555543 221 1122 345689999988888776 67754
No 88
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=60.55 E-value=96 Score=27.88 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRA 695 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRA 695 (820)
..++.+|+.++.+|-.|-..|..+..++...|.
T Consensus 15 ~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K~ 47 (114)
T 3rmi_A 15 AYLRQSIDNFDITLIHILAERFRCTQAIGRLKA 47 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888888888777664
No 89
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=60.08 E-value=1e+02 Score=28.03 Aligned_cols=21 Identities=10% Similarity=0.283 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDA 685 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~a 685 (820)
++..|+.++.+|+.++..+..
T Consensus 43 lrr~iq~L~~el~~l~~~~~s 63 (131)
T 3tnu_A 43 LRRTMQNLEIELQSQLSMKAS 63 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHH
Confidence 334444444444444333333
No 90
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=59.91 E-value=4.3 Score=45.02 Aligned_cols=83 Identities=12% Similarity=0.237 Sum_probs=43.8
Q ss_pred ccCceeEEeccCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 648 KQPFYFLVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQT---IRASYKEYAEKLEAAISDERSARESLKSKRQE 724 (820)
Q Consensus 648 khsFYYfVRVPRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKA---KRAERsELIeQLKALRaE~RqlR~eldEKRKE 724 (820)
.|.| |.|.+++|--++..-=.+|..+=..+...|..+..+.++ .-.++.+|..+|..+.++.+..+..+.+....
T Consensus 287 ~H~f--f~~~r~~d~~e~qqm~~~a~e~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (575)
T 2i1j_A 287 NHEL--YMRRRKPDTIDVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDM 364 (575)
T ss_dssp HHHH--HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHH--HHHccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4667 366688987777665556665544444444444322222 11335667777777777777777666655444
Q ss_pred HHHHHHHH
Q 003431 725 IDSVQSRI 732 (820)
Q Consensus 725 LdpLQEaL 732 (820)
...|.+.+
T Consensus 365 ~~~l~e~~ 372 (575)
T 2i1j_A 365 ILRLEEQL 372 (575)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 44444433
No 91
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=59.76 E-value=87 Score=27.15 Aligned_cols=37 Identities=16% Similarity=0.315 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHH
Q 003431 669 IKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLE 705 (820)
Q Consensus 669 IDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLK 705 (820)
|..|+.+|..++..+..+..++.-.+.....++.++.
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE 38 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ 38 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666665555555555554444
No 92
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=59.45 E-value=98 Score=28.54 Aligned_cols=81 Identities=15% Similarity=0.281 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-cCCChHhH
Q 003431 667 EQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM-K-NAISVDDI 744 (820)
Q Consensus 667 AKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KL-R-NASSeEEI 744 (820)
+++..|+..+..+......+..+.+..+.+-...+..|..-..+++..+..+..++.+|+.-...|.+- | .+.|.+++
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 345555555555555555555555554444333333333322333333333334444444444444322 2 23577777
Q ss_pred HHH
Q 003431 745 DGS 747 (820)
Q Consensus 745 Dar 747 (820)
+.+
T Consensus 83 E~k 85 (111)
T 2v66_B 83 EQR 85 (111)
T ss_dssp HHH
T ss_pred HHH
Confidence 755
No 93
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=58.33 E-value=80 Score=29.32 Aligned_cols=45 Identities=11% Similarity=0.248 Sum_probs=21.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 688 DDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 688 eEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL 732 (820)
+.|.-+++.-.-|..-|.+=|+-+..+....++-..++..||..+
T Consensus 62 E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 344555555555555555555444444444444444444444443
No 94
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=56.53 E-value=53 Score=28.65 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=31.2
Q ss_pred ChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 003431 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS 696 (820)
Q Consensus 662 DEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAE 696 (820)
-..++++||.++.+|-++-..|..+..++...|..
T Consensus 19 L~~lR~~ID~ID~~Ll~LL~~R~~~~~~Ig~~K~~ 53 (91)
T 1ybz_A 19 LKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKKE 53 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999998888753
No 95
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=56.01 E-value=1.4e+02 Score=31.16 Aligned_cols=9 Identities=11% Similarity=0.397 Sum_probs=3.8
Q ss_pred HHHHHHhhh
Q 003431 744 IDGSIRNME 752 (820)
Q Consensus 744 IDarIKsLE 752 (820)
|+..|+..|
T Consensus 412 ~~~~~~~~~ 420 (487)
T 3oja_A 412 LRAIVKRYE 420 (487)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 96
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=55.73 E-value=1.3e+02 Score=29.36 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASY 697 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAER 697 (820)
+.++++.....++|+-++++..+.++.++-....+
T Consensus 34 d~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~ 68 (170)
T 3l4q_C 34 DQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQG 68 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777666666555443
No 97
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=55.43 E-value=1.2e+02 Score=27.42 Aligned_cols=35 Identities=14% Similarity=0.345 Sum_probs=14.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 003431 673 QSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAA 707 (820)
Q Consensus 673 QkEIqKLNQaR~aIieEIKAKRAERsELIeQLKAL 707 (820)
..+|..++..-..+..++..++..+..|-.+|..+
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~ 69 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADA 69 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33444443333334444444444444444444433
No 98
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=55.11 E-value=53 Score=27.12 Aligned_cols=59 Identities=10% Similarity=-0.004 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 669 IKAAQSKVDEKTRSRDAIRDDIQTIR-------ASYKEYAEKLEAAISDERSARESLKSKRQEIDS 727 (820)
Q Consensus 669 IDeAQkEIqKLNQaR~aIieEIKAKR-------AERsELIeQLKALRaE~RqlR~eldEKRKELdp 727 (820)
...+..+|......-..+...-+.+- .....+..++..|......+.....++++.|..
T Consensus 45 h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~Le~ 110 (119)
T 3uun_A 45 HEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNLHR 110 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555544333333444333332 234567778888888888887777777765543
No 99
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=54.52 E-value=50 Score=36.67 Aligned_cols=47 Identities=9% Similarity=0.270 Sum_probs=32.6
Q ss_pred EEeccCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHH
Q 003431 654 LVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKL 704 (820)
Q Consensus 654 fVRVPRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQL 704 (820)
|.|+.+ .++..|++|+..++.+.+.-..+..-++.++.....-+.+.
T Consensus 86 L~kye~----~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~ 132 (461)
T 3ghg_B 86 LLQQER----PIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQV 132 (461)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHhccc----chhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCC
Confidence 555443 48888888888888888887777777777775554444333
No 100
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=54.48 E-value=99 Score=26.19 Aligned_cols=39 Identities=5% Similarity=0.134 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 698 KEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 698 sELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
.+++.+|..+.++...+...+.....+++.+..++..|.
T Consensus 4 Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~ 42 (107)
T 1fxk_A 4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555544
No 101
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=54.45 E-value=79 Score=28.31 Aligned_cols=34 Identities=18% Similarity=0.411 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHH--------HHhhhHHHHHHHHHHHHHh
Q 003431 663 ENLREQIKAAQSKVD--------EKTRSRDAIRDDIQTIRAS 696 (820)
Q Consensus 663 EkLKAKIDeAQkEIq--------KLNQaR~aIieEIKAKRAE 696 (820)
.+++++||+++.+|- +|-..|..+..++...|..
T Consensus 6 ~~lR~~ID~ID~~il~~~~~~~~~Ll~eR~~l~~~Va~~K~~ 47 (104)
T 2gtv_X 6 AEIRKKIDEIDNKILKARWPWAEKLIAERNSLAKDVAEIKNQ 47 (104)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999 9999999998888887743
No 102
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=54.19 E-value=1.8e+02 Score=29.07 Aligned_cols=110 Identities=12% Similarity=0.235 Sum_probs=50.2
Q ss_pred ChHHHHHHHHHHHHHHHHhhhHHHHHHHH-----------------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 662 DENLREQIKAAQSKVDEKTRSRDAIRDDI-----------------QTIRASYKEYAEKLEAAISDERSARESLKSKRQE 724 (820)
Q Consensus 662 DEkLKAKIDeAQkEIqKLNQaR~aIieEI-----------------KAKRAERsELIeQLKALRaE~RqlR~eldEKRKE 724 (820)
++.++.+|+.+..+|.++...-..-+..+ +.++.....|..+|..+..+++.....+.++.++
T Consensus 68 ~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~ 147 (267)
T 1dn1_B 68 DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKG 147 (267)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44788888888777765432211111111 1122223344555555555555544444444332
Q ss_pred HHHHHHHHHHhhcCCChHhHHHHHHhhhhhhhcCC--CChHHHHHHHHHHH
Q 003431 725 IDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHET--LPLKEEKQIIREIK 773 (820)
Q Consensus 725 LdpLQEaL~KLRNASSeEEIDarIKsLEyRIQHES--LSLkEEKKLLKEIK 773 (820)
. ++-.+.-.....+.++|+..|..=.+.+-+.. |.-..-++.|.+|.
T Consensus 148 ~--i~Rq~~i~~~~~tdeeie~~ie~g~~~~f~q~~l~~~~~~~~~l~~i~ 196 (267)
T 1dn1_B 148 R--IQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSSISKQALSEIE 196 (267)
T ss_dssp H--HHHHHHHTTCCCCHHHHHHHHHTCSSCTTTTTCCCCSHHHHHHHHHHH
T ss_pred H--HHhHhhccCCCCCHHHHHHHHhCCcHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1 11111111123588999988765333333222 12244555565444
No 103
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=54.16 E-value=1e+02 Score=29.29 Aligned_cols=76 Identities=12% Similarity=0.181 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHHHHHh
Q 003431 671 AAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRN 750 (820)
Q Consensus 671 eAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEIDarIKs 750 (820)
.+.++|++.-..-...+..+.+.-.+|..++..|......++......+.+.++-+.....+..+|+ +|+..|..
T Consensus 72 ~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkk-----eL~~hi~s 146 (152)
T 4fla_A 72 RLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRK-----ELKSHIQS 146 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhc
Confidence 3344444444444455666666667777777777666655554444444444444444444444442 45555655
Q ss_pred h
Q 003431 751 M 751 (820)
Q Consensus 751 L 751 (820)
|
T Consensus 147 L 147 (152)
T 4fla_A 147 L 147 (152)
T ss_dssp C
T ss_pred C
Confidence 4
No 104
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=53.90 E-value=70 Score=30.57 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=28.4
Q ss_pred CChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHH
Q 003431 739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQL 775 (820)
Q Consensus 739 SSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQL 775 (820)
+|.+++|++|-.+-..|..-+-.|.|--.-=++|..|
T Consensus 90 sslD~vD~~Il~Ak~aL~evt~~l~Er~~RW~qIE~L 126 (136)
T 3ter_A 90 STSDQVDSKIFALKSRMEKIHTLTRETQERWLQIESL 126 (136)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999988888877777777666666666554
No 105
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=53.47 E-value=1.1e+02 Score=28.20 Aligned_cols=45 Identities=11% Similarity=0.231 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAI 708 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALR 708 (820)
.+.+.+..++.+|..+++....+...+..+..+|+-|..+|+.+.
T Consensus 8 al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIE 52 (106)
T 4e61_A 8 AIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIE 52 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666667666666666666666666677776666665443
No 106
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=53.44 E-value=31 Score=33.47 Aligned_cols=39 Identities=10% Similarity=0.014 Sum_probs=31.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003431 674 SKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDER 712 (820)
Q Consensus 674 kEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~R 712 (820)
++|++|...|....+.|+.|++.+.+|+.|..++++-.+
T Consensus 5 qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~ 43 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQ 43 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888999999999999999998888877765443
No 107
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=53.27 E-value=33 Score=36.49 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHH
Q 003431 667 EQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKL 704 (820)
Q Consensus 667 AKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQL 704 (820)
++|+++..+|..+++.+.++...++.++.++.++.+++
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 40 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEIL 40 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666555555555555544444444444443
No 108
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=52.95 E-value=1.7e+02 Score=32.81 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=43.7
Q ss_pred hhhhhcCCCChH-HHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhH-HHHHHHHHHHHhhcc
Q 003431 752 EHRIAHETLPLK-EEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKD-QIEEKMKVVLSSMFS 815 (820)
Q Consensus 752 EyRIQHESLSLk-EEKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKE-AIQdQVKlLkKEL~s 815 (820)
+..|-..--.|. .||+|-.|-.+-++.+.+......+|.+.++.|.+++ ..|++++.|...|+.
T Consensus 472 ~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~ 537 (592)
T 1f5n_A 472 TDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEN 537 (592)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333433333333 3566666667777777777777788888888888776 788888888777764
No 109
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=52.92 E-value=1.1e+02 Score=32.44 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTI 693 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAK 693 (820)
+.+......+.++|+-++++-.+.++.++--
T Consensus 143 ~~~~~~~~~~~~e~~~k~~a~~af~~~~~~f 173 (373)
T 3hhm_B 143 DRLYEEYTRTSQEIQMKRTAIEAFNETIKIF 173 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 4566666667777777766666666654443
No 110
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=52.24 E-value=83 Score=24.74 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 700 YAEKLEAAISDERSARESLKSKRQEIDS 727 (820)
Q Consensus 700 LIeQLKALRaE~RqlR~eldEKRKELdp 727 (820)
+..+++.+...+.++...+..-+.+|..
T Consensus 24 ~~~~~~~~k~~~~~~~~~l~~~~~~I~~ 51 (60)
T 3htk_A 24 KTDEFLKAKEKINEIFEKLNTIRDEVIK 51 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 111
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=51.85 E-value=1.1e+02 Score=34.50 Aligned_cols=72 Identities=15% Similarity=0.245 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLK---SKRQEIDSVQSRINM 734 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eld---EKRKELdpLQEaL~K 734 (820)
...+++|..++..|+.++..|.+...+.+.....+..+......++.+....+..+. +|..|++.++.++.-
T Consensus 359 ddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiAE~KrK~dE~~aIKDAVkf 433 (602)
T 1cii_A 359 LDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQDELKATKDAINF 433 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhHHHHHHHHHHH
Confidence 456788888888888888888887777777766666666666666666665554333 345566677776643
No 112
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=51.46 E-value=1.7e+02 Score=28.10 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=15.1
Q ss_pred CChHhHHHHHHhhhhhhhcC
Q 003431 739 ISVDDIDGSIRNMEHRIAHE 758 (820)
Q Consensus 739 SSeEEIDarIKsLEyRIQHE 758 (820)
.++.-|...|-.||.++.+.
T Consensus 98 Rsv~kLEk~id~lEd~L~~~ 117 (155)
T 2efr_A 98 RSVTKLEKSIDDLEDELYAQ 117 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57778888888888877653
No 113
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=51.18 E-value=1.2e+02 Score=26.19 Aligned_cols=59 Identities=8% Similarity=0.147 Sum_probs=30.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHHHHHhhhhhhh
Q 003431 689 DIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIA 756 (820)
Q Consensus 689 EIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEIDarIKsLEyRIQ 756 (820)
.+......|.+|-.++..|.++...+... ..++......|.+ +..+|+..|+.|+-|+.
T Consensus 29 ~l~k~e~~rkele~~~~~l~~ek~~L~~q----l~eaEe~~~~L~~-----~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 29 DLAKTERIKKELEEQNVTLLEQKNDLFGS----MKQLEDKVEELLS-----KNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHH-----HHHHHHHHHHHHHHHhh
Confidence 33444455555555555555555555544 2333333333322 33577777777777664
No 114
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=50.12 E-value=42 Score=37.03 Aligned_cols=28 Identities=14% Similarity=0.003 Sum_probs=11.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003431 688 DDIQTIRASYKEYAEKLEAAISDERSAR 715 (820)
Q Consensus 688 eEIKAKRAERsELIeQLKALRaE~RqlR 715 (820)
.++.++-.+|+.++.+++.|++++..+.
T Consensus 37 d~~~~ld~~~r~~~~~~~~l~~~rN~~s 64 (484)
T 3lss_A 37 DAIIEADKKWRRTQFLTEASKKLINICS 64 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444443333333
No 115
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=50.07 E-value=14 Score=32.75 Aligned_cols=15 Identities=13% Similarity=0.355 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHH
Q 003431 663 ENLREQIKAAQSKVD 677 (820)
Q Consensus 663 EkLKAKIDeAQkEIq 677 (820)
..++..|..|+.-+.
T Consensus 13 ~D~~~ql~~l~~~~~ 27 (95)
T 2c5k_T 13 KDTKEQLNRINNYIT 27 (95)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555543
No 116
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=50.02 E-value=46 Score=35.44 Aligned_cols=54 Identities=11% Similarity=0.230 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 683 RDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 683 R~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
+.++..++..++.++.++..+++.+..+++.++..+.+.....+.|...|..||
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 356777788888888888888888888888888888777777778888887777
No 117
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=49.79 E-value=80 Score=28.71 Aligned_cols=20 Identities=10% Similarity=0.257 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 003431 717 SLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 717 eldEKRKELdpLQEaL~KLR 736 (820)
.+.+.++++..||..+.+||
T Consensus 69 a~~~~~~~~e~Lq~E~erLr 88 (100)
T 1go4_E 69 ARQRLREDHSQLQAECERLR 88 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455667777777776666
No 118
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=49.37 E-value=1.5e+02 Score=26.85 Aligned_cols=46 Identities=7% Similarity=0.274 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISD 710 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE 710 (820)
+..+|..+...+.+....|..+-.+...+..++..|..+|.+-+..
T Consensus 18 ~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~ 63 (129)
T 2fxo_A 18 MKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDN 63 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666666666666554433
No 119
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=48.63 E-value=1e+02 Score=28.14 Aligned_cols=43 Identities=7% Similarity=0.138 Sum_probs=24.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 690 IQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 690 IKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL 732 (820)
+...|-.+.+|+.|.+.|.+-+..++..-.++-+.+..|+..|
T Consensus 13 Le~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~aki 55 (101)
T 1d7m_A 13 LESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKL 55 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666666666655555555555555544
No 120
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=48.45 E-value=1.2e+02 Score=26.75 Aligned_cols=49 Identities=6% Similarity=0.074 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003431 668 QIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARE 716 (820)
Q Consensus 668 KIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~ 716 (820)
.+..+-.+=..|.....++.--.+.+-++..+|..+-..|+.++.+++.
T Consensus 10 evEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~ 58 (77)
T 2w83_C 10 EVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQ 58 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444444434444444444444444444444444444444444444443
No 121
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=48.37 E-value=1.4e+02 Score=26.07 Aligned_cols=55 Identities=9% Similarity=0.265 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHH-HH------HHHHHHHHHHHHHHHHHHH-HHHHHHHhh
Q 003431 682 SRDAIRDDIQTIRASYKEYAEKLEA-AI------SDERSARESLKSKRQEIDS-VQSRINMMK 736 (820)
Q Consensus 682 aR~aIieEIKAKRAERsELIeQLKA-LR------aE~RqlR~eldEKRKELdp-LQEaL~KLR 736 (820)
.|.+.+.++...-.+..+|+.||.- ++ +.+..++..+..=+.+++. |+..+++|.
T Consensus 31 ~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 31 QRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4666677777777777777777762 11 2233444555555666666 666666554
No 122
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=48.00 E-value=14 Score=38.01 Aligned_cols=41 Identities=12% Similarity=0.314 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 696 SYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 696 ERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
+..+|..++..|.++++.+...+...++|+..|++.|.+|+
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45578888888888888888899999999999999998888
No 123
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=47.23 E-value=2.1e+02 Score=28.23 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhHH----HHHHHHHHHHHHH
Q 003431 683 RDAIRDDIQTIRASYK----EYAEKLEAAISDE 711 (820)
Q Consensus 683 R~aIieEIKAKRAERs----ELIeQLKALRaE~ 711 (820)
|..|......+|.++. +|+.+|..++.+.
T Consensus 72 ~~~l~~~~~~lr~~l~kd~ee~r~~l~Py~~el 104 (243)
T 2a01_A 72 WDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDF 104 (243)
T ss_dssp HHHHHHHHHHHHHTSSCCSSCSSTTHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443333 3444444444433
No 124
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=46.97 E-value=2.6e+02 Score=31.84 Aligned_cols=43 Identities=14% Similarity=0.335 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHhhcc-ccc
Q 003431 770 REIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSSMFS-SFL 818 (820)
Q Consensus 770 KEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKEL~s-~f~ 818 (820)
++|+.|+..+.++. +.. +-+. ..+..+++++..|-+.|.. +|.
T Consensus 140 qql~~l~~l~~k~~-~~~--dp~~---~~~~~l~~~~~~ll~~Lv~ssFV 183 (575)
T 1bf5_A 140 QQLKKLEELEQKYT-YEH--DPIT---KNKQVLWDRTFSLFQQLIQSSFV 183 (575)
T ss_dssp HHHHHHHHHHHHCC-CTT--CHHH---HHHHHHHHHHHHHHHHHHHHHEE
T ss_pred HHHHHHHHHHhhcC-CCC--Cccc---cchHHHHHHHHHHHHHHHHhhee
Confidence 45666666555532 221 1122 3455888888887777654 554
No 125
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=46.70 E-value=73 Score=29.48 Aligned_cols=74 Identities=14% Similarity=0.181 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
..+.+.|.++-..|-.+-+.-..++..+...-.--.+-..+|+.|..+++.....+.++.++.+.|...++.+-
T Consensus 53 ~~f~~~~~ela~dli~k~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l 126 (132)
T 1ykh_B 53 EEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMI 126 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888776655555555566777777666555666777888888888877777777777777766665543
No 126
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=46.65 E-value=1.5e+02 Score=25.90 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 697 YKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINM 734 (820)
Q Consensus 697 RsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~K 734 (820)
.-++..+|..|+.+...+|..+++-..+++.|++..+.
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd 59 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777777777766666666665433
No 127
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer membrane; HET: UNL; 2.30A {Escherichia coli}
Probab=46.41 E-value=2.3e+02 Score=28.14 Aligned_cols=58 Identities=9% Similarity=0.102 Sum_probs=33.0
Q ss_pred EEeccCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003431 654 LVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSA 714 (820)
Q Consensus 654 fVRVPRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~Rql 714 (820)
-+.+|-|+--..+++|..++.+++ +.+..+.......+.+......++..++.+.+.+
T Consensus 320 ~l~~plf~gg~~~~~~~~a~~~~~---~a~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~ 377 (446)
T 3pik_A 320 KIEIPIFNAGRNQANLDIAEIRQQ---QSVVNYEQKIQNAFKEVADALALRQSLNDQISAQ 377 (446)
T ss_dssp EEECCCCCTTHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred heeeeccccchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788998888888888887744 3333343444444444444444444444444333
No 128
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.35 E-value=1.7e+02 Score=26.56 Aligned_cols=26 Identities=15% Similarity=0.406 Sum_probs=12.9
Q ss_pred CChHHHHHHHHHHHHHHHHhhhHHHH
Q 003431 661 DDENLREQIKAAQSKVDEKTRSRDAI 686 (820)
Q Consensus 661 DDEkLKAKIDeAQkEIqKLNQaR~aI 686 (820)
|-++|+.+|..+...+..+-+.-...
T Consensus 45 Dt~~LR~kl~~~~~~t~~l~k~ts~~ 70 (130)
T 2dnx_A 45 DSSKLQENLQQLQHSTNQLAKETNEL 70 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555444433333
No 129
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=46.07 E-value=1.4e+02 Score=26.27 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHH
Q 003431 681 RSRDAIRDDIQTIRASYKEYAEKLE 705 (820)
Q Consensus 681 QaR~aIieEIKAKRAERsELIeQLK 705 (820)
..|.+.+.++...-.+..+|+.||+
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMe 69 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEME 69 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666677777777777766
No 130
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=45.81 E-value=2.2e+02 Score=31.47 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHH
Q 003431 699 EYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQR 778 (820)
Q Consensus 699 ELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkT 778 (820)
.|...++....+.......+.+...+|+.++..++...+ ..+...|+.|+..+. .+-+.|.+|+..
T Consensus 125 ~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~----~~~~~~i~~L~~~~~----------~l~~ki~~l~~~ 190 (464)
T 1m1j_B 125 MIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLD----NNIPSSLRVLRAVID----------SLHKKIQKLENA 190 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----THHHHHHHHHHHHHH----------HHHHHHHHHHHH
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHh----ccchhHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 344444444444444444455555555555555543331 112344555554442 344556666665
Q ss_pred HH
Q 003431 779 RE 780 (820)
Q Consensus 779 RE 780 (820)
..
T Consensus 191 ~~ 192 (464)
T 1m1j_B 191 IA 192 (464)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 131
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=45.76 E-value=2.2e+02 Score=27.65 Aligned_cols=43 Identities=7% Similarity=0.006 Sum_probs=16.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003431 674 SKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARE 716 (820)
Q Consensus 674 kEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~ 716 (820)
+.|..++..+..+..+++.+..+..+...-+..++.++..++.
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLql 110 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTI 110 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443333333333333333333333333333333333333
No 132
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=45.74 E-value=2.3e+02 Score=27.83 Aligned_cols=114 Identities=13% Similarity=0.170 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 003431 666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYA-------EKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNA 738 (820)
Q Consensus 666 KAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELI-------eQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNA 738 (820)
..||..|++++..++..-..-.+.-..+|-.-.++. ..++.|......+......-.+++-.||..|..=|+.
T Consensus 5 neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~ 84 (168)
T 3o0z_A 5 NEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRD 84 (168)
T ss_dssp -----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666655544443333333332223333 2333344444444455555566666777766554411
Q ss_pred ---C--ChHhHHHHHHhhhhhhhcCC----CChHHHHHHHHHHHHHHHHH
Q 003431 739 ---I--SVDDIDGSIRNMEHRIAHET----LPLKEEKQIIREIKQLKQRR 779 (820)
Q Consensus 739 ---S--SeEEIDarIKsLEyRIQHES----LSLkEEKKLLKEIKQLKkTR 779 (820)
. ...|+..+|..|+--+.... --..|=+++-..|..|++.+
T Consensus 85 r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~ 134 (168)
T 3o0z_A 85 RGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEK 134 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 23566666766665554432 22333344445566666543
No 133
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=45.71 E-value=63 Score=34.66 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 683 RDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 683 R~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
|..+..++..++.++.++..+++.+.++++.++..+.+.-.+.+.|...+..|+
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455555566666666666666666666666666555555555566666666666
No 134
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=45.43 E-value=2.8e+02 Score=30.42 Aligned_cols=46 Identities=7% Similarity=0.193 Sum_probs=35.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 691 QTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 691 KAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
..++.+...|..++..-...++.||..++.-+.+|+.|-..|+.-|
T Consensus 116 ~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~ 161 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKI 161 (390)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666766666888899999999999999999986555
No 135
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=44.99 E-value=1.3e+02 Score=28.74 Aligned_cols=74 Identities=9% Similarity=0.298 Sum_probs=42.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 659 RYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEY-------AEKLEAAISDERSARESLKSKRQEIDSVQSR 731 (820)
Q Consensus 659 RYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsEL-------IeQLKALRaE~RqlR~eldEKRKELdpLQEa 731 (820)
++|++.+.+++..++.++...+.........++ +...| ..+++.++.++..++..+...+.+++.++..
T Consensus 52 ~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~----r~~~L~~~g~~s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~ 127 (277)
T 2f1m_A 52 QIDPATYQATYDSAKGDLAKAQAAANIAQLTVN----RYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARIN 127 (277)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHTTTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999888886644322211111111 11111 3455666666666666666666677777766
Q ss_pred HHHhh
Q 003431 732 INMMK 736 (820)
Q Consensus 732 L~KLR 736 (820)
|..+.
T Consensus 128 l~~~~ 132 (277)
T 2f1m_A 128 LAYTK 132 (277)
T ss_dssp HHTTE
T ss_pred hhcCE
Confidence 65544
No 136
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=44.84 E-value=3.8e+02 Score=30.10 Aligned_cols=11 Identities=0% Similarity=0.205 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 003431 801 QIEEKMKVVLS 811 (820)
Q Consensus 801 AIQdQVKlLkK 811 (820)
.++.++..|++
T Consensus 571 ~~~~ei~~l~~ 581 (592)
T 1f5n_A 571 IMKNEIQDLQT 581 (592)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 137
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=44.72 E-value=98 Score=25.61 Aligned_cols=58 Identities=7% Similarity=0.020 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 669 IKAAQSKVDEKTRSRDAIRDDIQTIR-------ASYKEYAEKLEAAISDERSARESLKSKRQEID 726 (820)
Q Consensus 669 IDeAQkEIqKLNQaR~aIieEIKAKR-------AERsELIeQLKALRaE~RqlR~eldEKRKELd 726 (820)
...+..+|......-..+...-+.+- .....+..++..|......+.....++++.|+
T Consensus 45 h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~ 109 (118)
T 3uul_A 45 HETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRLH 109 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555544433333444433332 23446777888888888888877777766554
No 138
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=43.87 E-value=1.7e+02 Score=25.80 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=8.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 003431 693 IRASYKEYAEKLEAAISDERSARE 716 (820)
Q Consensus 693 KRAERsELIeQLKALRaE~RqlR~ 716 (820)
++.+-..++.+|..|..+...+..
T Consensus 16 l~~eE~~L~~eL~~lEke~~~l~~ 39 (96)
T 3q8t_A 16 LALEEERLIQELEDVEKNRKVVAE 39 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 333333333333333333333333
No 139
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=43.71 E-value=1e+02 Score=32.29 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q 003431 763 KEEKQIIREIKQLKQ 777 (820)
Q Consensus 763 kEEKKLLKEIKQLKk 777 (820)
++=+++.++|++|++
T Consensus 226 k~~~~~~~ei~~l~~ 240 (346)
T 2nrj_A 226 DNLGKLEPLLAELRQ 240 (346)
T ss_dssp GGHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455555555543
No 140
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=43.70 E-value=1.6e+02 Score=27.41 Aligned_cols=19 Identities=11% Similarity=0.216 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 003431 664 NLREQIKAAQSKVDEKTRS 682 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQa 682 (820)
.+...+..|..+++.|.+.
T Consensus 6 ~i~~~l~~Leae~q~L~~~ 24 (119)
T 3etw_A 6 SLVGELQALDAEYQNLANQ 24 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3555566666665555443
No 141
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=43.37 E-value=1.4e+02 Score=26.06 Aligned_cols=62 Identities=6% Similarity=0.132 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEID 726 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELd 726 (820)
+..++..+...+...++.-..+...+..++.+...|+.+++.+..+..++...-..-..+++
T Consensus 4 ~e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 4 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666555544444455566666677777777777776666666665554444444443
No 142
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=43.26 E-value=77 Score=26.09 Aligned_cols=44 Identities=11% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003431 672 AQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSAR 715 (820)
Q Consensus 672 AQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR 715 (820)
.+.+++.++..-..-...++..|.+..+|+.++..|..++..+|
T Consensus 33 y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 33 YKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 143
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=42.98 E-value=41 Score=35.94 Aligned_cols=60 Identities=15% Similarity=0.296 Sum_probs=32.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 675 KVDEKTRSRDAIRDDIQTIRASYKEYAEKLE----------AAISDERSARESLKSKRQEIDSVQSRINM 734 (820)
Q Consensus 675 EIqKLNQaR~aIieEIKAKRAERsELIeQLK----------ALRaE~RqlR~eldEKRKELdpLQEaL~K 734 (820)
+|..+-+.|.++..++..+|++|..+..++. +|+++.+.++..+....++++.+.+.|..
T Consensus 31 ~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 31 KVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556666666666666666655554 33455555555555555555555554443
No 144
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=42.19 E-value=1.6e+02 Score=26.23 Aligned_cols=54 Identities=15% Similarity=0.259 Sum_probs=35.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHHHHHhhhhhh
Q 003431 693 IRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRI 755 (820)
Q Consensus 693 KRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEIDarIKsLEyRI 755 (820)
+-.+.+.|+-++..+.+++-||...+...+.|+-.||+.|. .=|+.|++|+-++
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe---------~kd~ei~rL~~~l 77 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVA---------LKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---------hhHHHHHHHHHHH
Confidence 44556666667777777777777777777777777777762 2234555665554
No 145
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=41.80 E-value=84 Score=29.86 Aligned_cols=74 Identities=12% Similarity=0.171 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
+.+.+.|.++-..|-.+-+.-..++..+.....--.+-..+|+.|..+++.....+.++.++.+.|.+.++.+-
T Consensus 53 ~~f~~~~~ela~dli~kakqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l 126 (151)
T 1yke_B 53 EEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLI 126 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777787776555555555566777777665555566777888888888777777777777777776665544
No 146
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=41.10 E-value=2.1e+02 Score=27.43 Aligned_cols=38 Identities=11% Similarity=0.238 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 699 EYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 699 ELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
....++..++.+..+-|..+.++++.+..-.+.+.+|-
T Consensus 70 ~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv~~L~ 107 (150)
T 4dci_A 70 RVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQVRELE 107 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34556777777777777777777776666555665554
No 147
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=40.82 E-value=1.1e+02 Score=29.85 Aligned_cols=70 Identities=14% Similarity=0.234 Sum_probs=49.0
Q ss_pred eEEeccCCCCh----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 653 FLVKVPRYDDE----NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKR 722 (820)
Q Consensus 653 YfVRVPRYDDE----kLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKR 722 (820)
|+-|+++-..| .|..-...++..+..+...+..+...++...+...++-.++.+|+.++-+++...+.-+
T Consensus 78 ~~~~f~~e~~~~E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl 151 (170)
T 3l4q_C 78 YLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYL 151 (170)
T ss_dssp GGSSSSSCCCSSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 56666665544 24444556666777777788888888888888888888888888877777776665543
No 148
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=40.06 E-value=1.2e+02 Score=30.78 Aligned_cols=65 Identities=12% Similarity=0.186 Sum_probs=43.2
Q ss_pred EEeccCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 654 LVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSK 721 (820)
Q Consensus 654 fVRVPRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEK 721 (820)
-.++.+-+|+.++.-| ...+..++.+-..+..+++..+++++.+.++|...|.+..++|..++..
T Consensus 154 SL~f~~asde~Ik~yL---a~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~ 218 (228)
T 3q0x_A 154 TLAFRPGNDSVVKQFL---AFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKH 218 (228)
T ss_dssp EEEEEECCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeecCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566777888777655 3444555555556677777777777777777777777666666666554
No 149
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=39.79 E-value=1.8e+02 Score=31.02 Aligned_cols=17 Identities=18% Similarity=0.417 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 003431 767 QIIREIKQLKQRREQIS 783 (820)
Q Consensus 767 KLLKEIKQLKkTREKVi 783 (820)
++++.+++|+..|-..+
T Consensus 228 ~~~~~lQ~lEeeRi~~l 244 (486)
T 3haj_A 228 QVFEQCQQFEEKRLRFF 244 (486)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555544443
No 150
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=39.75 E-value=44 Score=28.94 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=30.3
Q ss_pred CChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 003431 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS 696 (820)
Q Consensus 661 DDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAE 696 (820)
+-..++++|+.++.+|-++-..|..+..++...|..
T Consensus 13 ~L~~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~~ 48 (90)
T 2vkl_A 13 EIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMA 48 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999988888777743
No 151
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=39.70 E-value=1.7e+02 Score=26.81 Aligned_cols=22 Identities=9% Similarity=0.134 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAI 686 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aI 686 (820)
+.+.++.++.+++.+.+.|..+
T Consensus 14 l~~~~qql~~~~~~l~~~~~~L 35 (151)
T 2zdi_C 14 LAYEYQVLQAQAQILAQNLELL 35 (151)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 152
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=39.61 E-value=2.3e+02 Score=26.14 Aligned_cols=63 Identities=14% Similarity=0.269 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSV 728 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpL 728 (820)
+.|+..|+.+..+++.++..-..+ +-.++.+...|..+|..-+.+...++...+..+.++..|
T Consensus 18 e~Lkreie~lk~ele~l~~E~q~~---v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 18 ERLYREISGLKAQLENMKTESQRV---VLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777778888777774443333 334556666666666666655555555555555555544
No 153
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=39.35 E-value=46 Score=28.13 Aligned_cols=34 Identities=12% Similarity=0.300 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS 696 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAE 696 (820)
..++++||.++.+|-+|-..|..+..++...|..
T Consensus 6 ~~lR~~ID~iD~~l~~Ll~~R~~~~~~i~~~K~~ 39 (90)
T 2d8d_A 6 QALRKEVDRVNREILRLLSERGRLVQEIGRLQTE 39 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688889999998888888888888777766643
No 154
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=39.19 E-value=3.5e+02 Score=28.08 Aligned_cols=62 Identities=16% Similarity=0.254 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 671 AAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 671 eAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
.+...|+..-..+.-.-+.++....+...++.++++-. +++.....-+++|..+|+.+..+|
T Consensus 356 ~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~----e~~~~~~~~~~~~~~~~~~~~~~~ 417 (471)
T 3mq9_A 356 AVRTAVINAASGRQTVDEALKDAQTRITAARDGLRAVM----EARNVTHLLQQELTEAQKGFQDVE 417 (471)
T ss_dssp HHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHH----HhhhHHHHHHHHHHHHhhhHHHHH
Confidence 34444544444443445555555555555555543322 333333444455555666665555
No 155
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=38.77 E-value=2.6e+02 Score=26.46 Aligned_cols=67 Identities=6% Similarity=0.181 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhhHHHHHHH-----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 670 KAAQSKVDEKTRSRDAIRDD-----------IQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 670 DeAQkEIqKLNQaR~aIieE-----------IKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
..+.++-..+.+.|..|+++ ...++..+.+|..++..|.++.=-+...+.....||..|...+..||
T Consensus 29 e~l~kE~e~k~eeKkkiLaER~~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~ 106 (133)
T 1j1d_C 29 QELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHH
Confidence 34555555666666676663 46678888888888888887777777777777788999998888876
No 156
>1yc9_A VCEC, multidrug resistance protein; outer membrane protein, multidrug resistanc membrane protein; HET: BOG; 1.80A {Vibrio cholerae}
Probab=38.32 E-value=2.8e+02 Score=27.63 Aligned_cols=58 Identities=9% Similarity=0.144 Sum_probs=32.4
Q ss_pred EEeccCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003431 654 LVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSA 714 (820)
Q Consensus 654 fVRVPRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~Rql 714 (820)
-+.+|-|+--..+.+|..++..+. +.+..+......++.+......++..++.+.+.+
T Consensus 316 ~~~~plf~gg~~~~~~~~a~~~~~---~a~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~ 373 (442)
T 1yc9_A 316 AIYLPLFTGGRLEGQLTSAEARYQ---EAVAQYNGTLVQALHEIADVVTSSQALQARINKT 373 (442)
T ss_dssp EEECCCCCTTHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred heeeecccchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367789998888889888887744 3333333333334444444444444444443333
No 157
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=37.93 E-value=77 Score=31.51 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 696 SYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN 733 (820)
Q Consensus 696 ERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~ 733 (820)
++.....++..++++++.++..+...+.+++.++..|.
T Consensus 116 ~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~ 153 (369)
T 4dk0_A 116 TLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLG 153 (369)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555555555555555555555555555444443
No 158
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=37.66 E-value=54 Score=28.69 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHHHH
Q 003431 706 AAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSI 748 (820)
Q Consensus 706 ALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEIDarI 748 (820)
.++.....+|..+.+|-.|+..|++.+ ++|+ ...|-|+..|
T Consensus 15 ~~~~~l~~Lr~eL~~Ke~eI~~L~e~i-~lk~-kd~ErLNDEi 55 (75)
T 3a7o_A 15 ALLNTLAILQKELKSKEQEIRRLKEVI-ALKN-KNTERLNDEL 55 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc-ccHHHhhHHH
Confidence 455566667778888888888888877 4443 3556666655
No 159
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=37.50 E-value=1.9e+02 Score=25.51 Aligned_cols=44 Identities=7% Similarity=0.169 Sum_probs=33.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 693 IRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 693 KRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
.|.+-.++..+...|..++..|+..+..-.+|+..|+..|..++
T Consensus 34 rk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p 77 (87)
T 1hjb_A 34 AKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 34445567777888888888888888888888888888776555
No 160
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=36.21 E-value=5.4e+02 Score=29.44 Aligned_cols=44 Identities=18% Similarity=0.536 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHhhcc-cccc
Q 003431 770 REIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSSMFS-SFLI 819 (820)
Q Consensus 770 KEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKEL~s-~f~i 819 (820)
++|+.|+..+.++. +...- + -..+..+++++..|-+.|.. +|.|
T Consensus 153 qql~~l~~l~~k~~-~~~dp--i---~~~~~~l~~~~~~ll~~Lv~ssFVV 197 (596)
T 1bg1_A 153 QQIKKLEELQQKVS-YKGDP--I---VQHRPMLEERIVELFRNLMKSAFVV 197 (596)
T ss_dssp HHHHHHHHHHHHSC-CTTCT--T---TTTHHHHHHHHHHHHHHHHHHHEEE
T ss_pred HHHHHHHHHHhhcC-CCCCc--c---ccchHHHHHHHHHHHHHHHHhheee
Confidence 45666666655543 22111 1 23466888888877777654 5543
No 161
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=36.21 E-value=37 Score=34.22 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=17.6
Q ss_pred CCChHhHHHHHHhhhhhhhcC
Q 003431 738 AISVDDIDGSIRNMEHRIAHE 758 (820)
Q Consensus 738 ASSeEEIDarIKsLEyRIQHE 758 (820)
+....+|-+.|..+.|...++
T Consensus 189 ~k~~~qly~~vt~i~w~~~~~ 209 (250)
T 2ve7_C 189 AVYVAQLYHQVSKIEWEYECE 209 (250)
T ss_dssp THHHHHHHHHHHCCEECSCCT
T ss_pred HHHHHHHHHHHhhceeecccC
Confidence 357888999999999999874
No 162
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=36.19 E-value=1.7e+02 Score=26.56 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q 003431 686 IRDDIQTIRASYKEYAEKLE 705 (820)
Q Consensus 686 IieEIKAKRAERsELIeQLK 705 (820)
+..++.+++..+..|-.+|.
T Consensus 50 L~~el~~l~~~~~sLE~~l~ 69 (131)
T 3tnu_A 50 LEIELQSQLSMKASLENSLE 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 33344444444444444333
No 163
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=35.97 E-value=2.1e+02 Score=24.65 Aligned_cols=42 Identities=7% Similarity=0.177 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHH
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLE 705 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLK 705 (820)
++..++..+...+.+....|..+-.+...+-.++..|..++.
T Consensus 18 ~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~ 59 (89)
T 3bas_A 18 EQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMK 59 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666667777777777788888887777788888877743
No 164
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=35.80 E-value=81 Score=33.28 Aligned_cols=45 Identities=9% Similarity=0.051 Sum_probs=21.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 692 TIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 692 AKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
+++.++..|...+.....+++.++..+.+....|..|++.|..|.
T Consensus 9 ~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 9 KILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444555555544455555555554444
No 165
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=35.30 E-value=1.3e+02 Score=34.76 Aligned_cols=16 Identities=13% Similarity=0.270 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHhhc
Q 003431 799 KDQIEEKMKVVLSSMF 814 (820)
Q Consensus 799 KEAIQdQVKlLkKEL~ 814 (820)
-.+++++++.+..+++
T Consensus 123 l~~~~~~~~~~~~~~~ 138 (706)
T 3fhn_A 123 VKALHSKLTSVFATVP 138 (706)
T ss_dssp HHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhhhcc
Confidence 3456666666544443
No 166
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=35.13 E-value=2.3e+02 Score=30.74 Aligned_cols=46 Identities=11% Similarity=0.166 Sum_probs=24.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 691 QTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 691 KAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
+++..++..|...+.....+++.++..+......|..|++.+..|.
T Consensus 87 kkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 87 KKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3344444444444444445555566656555556666666555554
No 167
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=34.97 E-value=2.9e+02 Score=25.90 Aligned_cols=34 Identities=3% Similarity=0.118 Sum_probs=14.1
Q ss_pred hHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHH
Q 003431 743 DIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQ 777 (820)
Q Consensus 743 EIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKk 777 (820)
+|+.+|+.|+- +.-.+.==.+=|+|+++-+.+.+
T Consensus 52 ~i~ek~~~i~~-~~~~~~yK~eY~~L~KkYk~~~~ 85 (119)
T 2avr_X 52 ELSQRAQRLQA-EANTRFYKSQYQELASKYEDALK 85 (119)
T ss_dssp HHHHHHHHHHH-HTTSCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHH
Confidence 44444444443 22333333333455544444433
No 168
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=34.93 E-value=1.9e+02 Score=24.58 Aligned_cols=49 Identities=10% Similarity=0.113 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 686 IRDDIQTIRASYKEYAEK----LEAAISDERSARESLKSKRQEIDSVQSRINM 734 (820)
Q Consensus 686 IieEIKAKRAERsELIeQ----LKALRaE~RqlR~eldEKRKELdpLQEaL~K 734 (820)
.+.+-++.|.++..++.. +..|......+......-+.++..|+..+..
T Consensus 16 NR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 16 NRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433333 3333333333333333334444444444433
No 169
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=34.82 E-value=3.2e+02 Score=27.06 Aligned_cols=67 Identities=6% Similarity=0.181 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhhHHHHHHH-----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 670 KAAQSKVDEKTRSRDAIRDD-----------IQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 670 DeAQkEIqKLNQaR~aIieE-----------IKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
..|.++-..+.+.|..|+++ ...++..+.+|..+|..|.++.=-+...+.....||..|...+..||
T Consensus 29 e~L~~E~e~k~eEKkkiLaER~kPLnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLr 106 (180)
T 1j1e_C 29 QELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHH
Confidence 34455555666666666653 56678888888888888887777777777777788999988888876
No 170
>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel, antibiotic RES lipoprotein, palmitate, transmemb transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A
Probab=34.81 E-value=2.5e+02 Score=28.52 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=33.3
Q ss_pred EEeccCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003431 654 LVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARE 716 (820)
Q Consensus 654 fVRVPRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~ 716 (820)
-+.+|-|+--..+.+|..++.+++ +.+..+......++.+.......+..++.+.+.++.
T Consensus 329 ~ls~plf~gg~~~~~i~~a~~~~~---~a~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~ 388 (474)
T 3d5k_A 329 SINLPIFTAGSLRASLDYAKIQKD---INVAQYEKAIQTAFQEVADGLAARGTFTEQLQAQRD 388 (474)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeccCcchhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888788888888887744 333333334344444444444444444444444333
No 171
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=34.69 E-value=99 Score=26.56 Aligned_cols=56 Identities=13% Similarity=0.217 Sum_probs=31.6
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003431 660 YDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSAR 715 (820)
Q Consensus 660 YDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR 715 (820)
..+..+..+|..|+-.|...-..-..++..+-........|..+++.|..+.+.+.
T Consensus 7 ~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 7 PRDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566777777777766655555555555555555666666666666655554443
No 172
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=34.63 E-value=91 Score=31.19 Aligned_cols=44 Identities=20% Similarity=0.449 Sum_probs=28.7
Q ss_pred ChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHH----------------HHHHHHHHHHhhcccchhHHH
Q 003431 740 SVDDIDGSIRNMEHRIAHETLPLKEEKQIIREI----------------KQLKQRREQISSSIGEHDEVQ 793 (820)
Q Consensus 740 SeEEIDarIKsLEyRIQHESLSLkEEKKLLKEI----------------KQLKkTREKViANAAmQAKIQ 793 (820)
+.-+||+.|+.|+. +||++.++| ++|=++|.++..|-.++++++
T Consensus 22 ~~R~LdR~~~kle~----------eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~ 81 (218)
T 3frt_A 22 EMRVVDRQIRDIQR----------EEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMN 81 (218)
T ss_dssp HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666664 377777777 445566777777777777774
No 173
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=34.59 E-value=1.9e+02 Score=28.20 Aligned_cols=16 Identities=6% Similarity=0.511 Sum_probs=9.3
Q ss_pred CCChHHHHHHHHHHHH
Q 003431 660 YDDENLREQIKAAQSK 675 (820)
Q Consensus 660 YDDEkLKAKIDeAQkE 675 (820)
..+++|.+-+.+|.+.
T Consensus 119 Ls~eeI~~m~~~a~~~ 134 (219)
T 4e81_A 119 LNEDEIQKMVRDAEAN 134 (219)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHh
Confidence 4566666666655543
No 174
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=34.26 E-value=2.8e+02 Score=25.59 Aligned_cols=14 Identities=14% Similarity=0.311 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhhc
Q 003431 801 QIEEKMKVVLSSMF 814 (820)
Q Consensus 801 AIQdQVKlLkKEL~ 814 (820)
+++.+|+.|+.+|.
T Consensus 116 ~~r~~I~~mk~~l~ 129 (130)
T 4dnd_A 116 RMREAVQEMKDHMV 129 (130)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 45556666666553
No 175
>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha helical barrel, beta barrel; 2.10A {Escherichia coli} SCOP: f.5.1.1 PDB: 1tqq_A 2vde_A 2vdd_A 2wmz_A* 2xmn_A*
Probab=34.06 E-value=2.5e+02 Score=27.53 Aligned_cols=60 Identities=15% Similarity=0.259 Sum_probs=32.6
Q ss_pred EEeccCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003431 654 LVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARE 716 (820)
Q Consensus 654 fVRVPRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~ 716 (820)
-+.+|-|+--..++++..++.++. +.+..+......++.+.......+..++.+.+.++.
T Consensus 287 ~~s~plf~~g~~~~~~~~a~~~~~---~a~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~ 346 (428)
T 1ek9_A 287 SFSLPIYQGGMVNSQVKQAQYNFV---GASEQLESAHRSVVQTVRSSFNNINASISSINAYKQ 346 (428)
T ss_dssp EEEEEEEETTHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeecCccchHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788887788888888877744 333333333333444444444444444444444333
No 176
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=34.05 E-value=2.1e+02 Score=24.70 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=30.8
Q ss_pred ChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 003431 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS 696 (820)
Q Consensus 662 DEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAE 696 (820)
-..++.+||.++.+|-.|-..|..+..++-..|..
T Consensus 10 L~~lR~~ID~iD~~il~LL~~R~~~~~~i~~~K~~ 44 (101)
T 3ret_A 10 LADIREAIDRIDLDIVQALGRRMDYVKAASRFEAS 44 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56899999999999999999999999888877754
No 177
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=33.68 E-value=60 Score=34.57 Aligned_cols=49 Identities=20% Similarity=0.370 Sum_probs=28.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 672 AQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKS 720 (820)
Q Consensus 672 AQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldE 720 (820)
++..|..+.+.+.++...+++..+...++-.+|.+|+.+.-+++..++.
T Consensus 210 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~ 258 (373)
T 3hhm_B 210 LKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQ 258 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 4445555555566666666666666666666666666655555554444
No 178
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=33.67 E-value=3.3e+02 Score=26.18 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=8.4
Q ss_pred hHhHHHHHHhhhhhhhc
Q 003431 741 VDDIDGSIRNMEHRIAH 757 (820)
Q Consensus 741 eEEIDarIKsLEyRIQH 757 (820)
.+.-.+.+..||..|..
T Consensus 93 AE~AERsv~kLEk~id~ 109 (155)
T 2efr_A 93 AEFAERSVTKLEKSIDD 109 (155)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555554443
No 179
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=32.76 E-value=4.8e+02 Score=30.37 Aligned_cols=25 Identities=8% Similarity=0.379 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Q 003431 671 AAQSKVDEKTRSRDAIRDDIQTIRA 695 (820)
Q Consensus 671 eAQkEIqKLNQaR~aIieEIKAKRA 695 (820)
+++..|+..++.|+.|..+++.++.
T Consensus 14 ~i~~~i~~~~~~r~~l~~~~~~~~~ 38 (706)
T 3fhn_A 14 NINDRIKQVQNERNELASKLQNLKQ 38 (706)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777778888999888888886
No 180
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=32.72 E-value=2.4e+02 Score=24.35 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRA---SYKEYAEKLEAAISDERSARESLKSKRQEID 726 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRA---ERsELIeQLKALRaE~RqlR~eldEKRKELd 726 (820)
+.+-.+++.++..|..++..-..|...-...-. .-..+..+|..+..+....-..+..+++.|+
T Consensus 8 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~ 74 (127)
T 1ez3_A 8 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIE 74 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666554444433222221111 1123455555555555544444444444443
No 181
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=32.68 E-value=3.3e+02 Score=25.83 Aligned_cols=112 Identities=11% Similarity=0.145 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhh-
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRA----SYKEYAEKLEAAISDERSARESLKSKRQEID---SVQSRINMMK- 736 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRA----ERsELIeQLKALRaE~RqlR~eldEKRKELd---pLQEaL~KLR- 736 (820)
+-+|...++.+|......-..|...-+.+.. ....+..++..|..+-..+......++..|. .+++.+.+++
T Consensus 53 llkkh~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~I~~r~~~l~~~W~~L~~~~~~R~~~L~~~l~~~~~~d~l~~ 132 (250)
T 1quu_A 53 LLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHL 132 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555543333334433333332 1234556666666666666665555444443 4444555555
Q ss_pred -cCCChHhHHHHHHhhhhhhhcCCC--ChHHHHHHHHHHHHHH
Q 003431 737 -NAISVDDIDGSIRNMEHRIAHETL--PLKEEKQIIREIKQLK 776 (820)
Q Consensus 737 -NASSeEEIDarIKsLEyRIQHESL--SLkEEKKLLKEIKQLK 776 (820)
-+...+++..-|...+..+....+ ++..=..+|++++.|+
T Consensus 133 qF~~~a~~~~~Wl~~~e~~l~~~~~~~d~e~v~~ll~~h~~~~ 175 (250)
T 1quu_A 133 EFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFK 175 (250)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCCCCCSTTTHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHH
Confidence 224677778778777777766533 4555666666666665
No 182
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=32.32 E-value=4.2e+02 Score=26.95 Aligned_cols=51 Identities=18% Similarity=0.351 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHH--------HHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 003431 682 SRDAIRDDIQTIRASYKEYAEKLE--------AAISDERSARESLKSK-RQEIDSVQSRI 732 (820)
Q Consensus 682 aR~aIieEIKAKRAERsELIeQLK--------ALRaE~RqlR~eldEK-RKELdpLQEaL 732 (820)
.|..|...+...|.++..|..+|+ .||.++..|-..+..+ +..++.|+..|
T Consensus 38 l~~~l~~~le~lr~~L~Py~~el~~~~~~~~eelr~kL~p~~~el~~~l~~~~eeLr~~L 97 (273)
T 3s84_A 38 VSQKIGDNLRELQQRLEPYADQLRTQVNTQAEQLRRQLTPYAQRMERVLRENADSLQASL 97 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344455666666666665555443 4444444444333332 22344555444
No 183
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=31.86 E-value=95 Score=28.41 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=26.9
Q ss_pred CCChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHH
Q 003431 738 AISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQL 775 (820)
Q Consensus 738 ASSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQL 775 (820)
-+|.+++|++|-.+-..|..-+..|.|--.==++|+.|
T Consensus 56 s~slD~vD~~Il~Ak~aL~evt~~l~Er~~RW~qIE~l 93 (101)
T 3teq_A 56 SSSLDDVDHKILTAKQALSEATAALRERLHRWQQIEIL 93 (101)
T ss_dssp CGGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999888777776666666655555555544
No 184
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=31.76 E-value=1.7e+02 Score=28.74 Aligned_cols=13 Identities=31% Similarity=0.527 Sum_probs=7.5
Q ss_pred cCCChHhHHHHHH
Q 003431 737 NAISVDDIDGSIR 749 (820)
Q Consensus 737 NASSeEEIDarIK 749 (820)
.+.|..+++..-.
T Consensus 109 ~~~s~~~~~~a~~ 121 (341)
T 3fpp_A 109 QAVSQQDLDNAAT 121 (341)
T ss_dssp SSSTTHHHHHHHH
T ss_pred CCccHHHHHHHHH
Confidence 3467777765433
No 185
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=31.06 E-value=1.1e+02 Score=27.58 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHH
Q 003431 664 NLREQIKAAQSKVDEKTRSRDAI 686 (820)
Q Consensus 664 kLKAKIDeAQkEIqKLNQaR~aI 686 (820)
..-.+...++.++.+++..+..|
T Consensus 20 ~~a~~~~~lk~E~~~lk~E~~st 42 (93)
T 3sjb_C 20 ELSKKYLAKVKERHELKEFNNSI 42 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhHHHHHHHHHHHHHHHHHHhcc
Confidence 44455555555555554444443
No 186
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=30.88 E-value=6.1e+02 Score=28.57 Aligned_cols=34 Identities=9% Similarity=0.290 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 699 EYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 699 ELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL 732 (820)
.|..++..-.+.++.||..++.-+.+|..|-.+|
T Consensus 122 yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 122 TLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333445555555555555555555544
No 187
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=30.74 E-value=62 Score=28.82 Aligned_cols=36 Identities=8% Similarity=0.226 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHH
Q 003431 669 IKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKL 704 (820)
Q Consensus 669 IDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQL 704 (820)
++-++..+..++.....+...+..++.+...+..++
T Consensus 90 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l 125 (133)
T 1fxk_C 90 MESIKSQKNELESTLQKMGENLRAITDIMMKLSPQA 125 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333334444444444333333
No 188
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=30.62 E-value=1.8e+02 Score=26.52 Aligned_cols=9 Identities=33% Similarity=0.785 Sum_probs=4.7
Q ss_pred cCCCChHHH
Q 003431 658 PRYDDENLR 666 (820)
Q Consensus 658 PRYDDEkLK 666 (820)
|.|+...+.
T Consensus 39 R~Y~~~dl~ 47 (142)
T 3gp4_A 39 RKFGAEDLR 47 (142)
T ss_dssp BCBCHHHHH
T ss_pred eeeCHHHHH
Confidence 456655444
No 189
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=30.57 E-value=5.7e+02 Score=28.72 Aligned_cols=63 Identities=14% Similarity=0.215 Sum_probs=40.1
Q ss_pred CChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHh
Q 003431 739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSS 812 (820)
Q Consensus 739 SSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKE 812 (820)
.|....++ -|+-+| .+|+..|..+|.+|+++|++..+.+...-+...++ ++-|.+.++.+++.
T Consensus 435 lse~qa~~---IL~m~L--~rLT~~e~~kl~~E~~~l~~ei~~l~~iL~~~~~~------~~~i~~el~~i~~~ 497 (514)
T 2inr_A 435 FTEEQAEA---IVMLQL--YRLTNTDIVALEGEHKELEALIKQLRHILDNHDAL------LNVIKEELNEIKKK 497 (514)
T ss_dssp CCHHHHHH---HHTCCG--GGGSTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHH------HHHHHHHHHHHHHH
T ss_pred CCHHHHHH---HHhchH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHHHHHH
Confidence 45554443 333333 56788899999999999999887777554444333 23555666666654
No 190
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=30.17 E-value=3.6e+02 Score=25.49 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=7.9
Q ss_pred hHhHHHHHHhhhhhhh
Q 003431 741 VDDIDGSIRNMEHRIA 756 (820)
Q Consensus 741 eEEIDarIKsLEyRIQ 756 (820)
+|.|.+.+..|.|||+
T Consensus 94 ~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 94 VERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHhhchhhhhHhh
Confidence 3444444555555554
No 191
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=30.16 E-value=89 Score=28.42 Aligned_cols=70 Identities=16% Similarity=0.269 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHH--HHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKE--YAEKL------------EAAISDERSARESLKSKRQEIDSVQSR 731 (820)
Q Consensus 666 KAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsE--LIeQL------------KALRaE~RqlR~eldEKRKELdpLQEa 731 (820)
...+..+.++|..|...|..+..++..+..++-. ++..+ ..+..-+++.+..+..-+.|++.|+..
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~ 90 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGL 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666665555544432 11111 123333333455666666677777766
Q ss_pred HHHh
Q 003431 732 INMM 735 (820)
Q Consensus 732 L~KL 735 (820)
+++|
T Consensus 91 v~~l 94 (100)
T 1go4_E 91 LRAM 94 (100)
T ss_dssp HTTC
T ss_pred HHHH
Confidence 6443
No 192
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=30.11 E-value=65 Score=26.03 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=10.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Q 003431 692 TIRASYKEYAEKLEAAISDERSAR 715 (820)
Q Consensus 692 AKRAERsELIeQLKALRaE~RqlR 715 (820)
++|.+..+|+.++..|..+...++
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333
No 193
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=30.09 E-value=2.1e+02 Score=27.09 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=18.3
Q ss_pred HHHHHhhhhhhhcCCCChHHHHHHHHH
Q 003431 745 DGSIRNMEHRIAHETLPLKEEKQIIRE 771 (820)
Q Consensus 745 DarIKsLEyRIQHESLSLkEEKKLLKE 771 (820)
-..|++|+-..--+-.||.||-+-..|
T Consensus 88 m~miQ~LQ~~td~el~plteeE~~a~~ 114 (123)
T 4aj5_K 88 MNMIQKLQKQTDLELSPLTKEEKTAAE 114 (123)
T ss_dssp HHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCCChhHHHHHH
Confidence 345777777766667788887765443
No 194
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=29.71 E-value=3.4e+02 Score=25.16 Aligned_cols=97 Identities=13% Similarity=0.229 Sum_probs=49.2
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Q 003431 658 PRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIR--ASYKEYAEKLEAAISDERSARE-----SLKSKRQEIDSVQS 730 (820)
Q Consensus 658 PRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKR--AERsELIeQLKALRaE~RqlR~-----eldEKRKELdpLQE 730 (820)
|-|...+|..++.+|-+.|...-.-+ .+..+.+++. .+...++.+|+.+..+....+. ...+..++++.|+.
T Consensus 2 ~~~~~~~I~d~A~eL~~aI~eseeyk-~yk~A~~~i~~D~eaq~li~eF~~~Q~~~~~~q~~Gk~~~~~e~~~el~~l~~ 80 (151)
T 2pih_A 2 TLYSKKDIVQQARNLAKMISETEEVD-FFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE 80 (151)
T ss_dssp CCBCHHHHHHHHHHHHHHHTTBHHHH-HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHcCHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHH
Confidence 34566678888888888766442221 2222222222 3444556666666555544431 24444555555555
Q ss_pred HHHHhh---cC-CChHhHHHHHHhhhhhh
Q 003431 731 RINMMK---NA-ISVDDIDGSIRNMEHRI 755 (820)
Q Consensus 731 aL~KLR---NA-SSeEEIDarIKsLEyRI 755 (820)
.|.... .+ ....+++..+..+...|
T Consensus 81 ~l~~np~V~~y~~Ae~~l~~LL~~I~~iI 109 (151)
T 2pih_A 81 ELEEIPVIQEFRDSQMEVNDLLQLVAHTI 109 (151)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 553322 11 24555555555555444
No 195
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=29.52 E-value=2e+02 Score=29.28 Aligned_cols=50 Identities=12% Similarity=0.271 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 683 RDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 683 R~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL 732 (820)
|.-|..++...|+++..+..+|...+++....+..+.+-|..+..+++.-
T Consensus 166 k~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~ 215 (228)
T 3q0x_A 166 KQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQY 215 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666655555555555555555555555554444444433
No 196
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=29.42 E-value=3e+02 Score=24.42 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 708 ISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 708 RaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
..+++.+.....+-..||+.|++.|..||
T Consensus 44 eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 44 ASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444443
No 197
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=29.23 E-value=2.9e+02 Score=24.08 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=20.2
Q ss_pred eccCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 003431 656 KVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTI 693 (820)
Q Consensus 656 RVPRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAK 693 (820)
++|....+.=++.|.+++..+.+....-.++--+++..
T Consensus 23 ~~~~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 23 EAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444545556666666666665555444444444444
No 198
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=29.21 E-value=1.8e+02 Score=24.64 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003431 671 AAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAI 708 (820)
Q Consensus 671 eAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALR 708 (820)
+..+.++.++..+......+..+..+|+=|..+|+.+.
T Consensus 6 aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE 43 (75)
T 3mtu_A 6 AIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIE 43 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33333444444455556666666666666666666543
No 199
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=29.13 E-value=1.1e+02 Score=26.88 Aligned_cols=62 Identities=11% Similarity=0.279 Sum_probs=32.7
Q ss_pred eccCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHH
Q 003431 656 KVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIR-ASYKEYAEKLEAAISDERSARES 717 (820)
Q Consensus 656 RVPRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKR-AERsELIeQLKALRaE~RqlR~e 717 (820)
++|...-+.=++.|.+++..|++....-.++--+++.+- +.|..|..+|+..+.++..++..
T Consensus 27 ~i~~~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~e 89 (102)
T 1vcs_A 27 RVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETD 89 (102)
T ss_dssp HGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666777777777666544444433333322 34555555555555555444433
No 200
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=28.92 E-value=4e+02 Score=25.64 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=11.8
Q ss_pred CCChHHHHHHHHHHH
Q 003431 660 YDDENLREQIKAAQS 674 (820)
Q Consensus 660 YDDEkLKAKIDeAQk 674 (820)
...++|+.|+.+|..
T Consensus 43 ~SleEIqkKLeAAEE 57 (143)
T 3ryc_E 43 PSLEEIQKKLEAAEE 57 (143)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 447789999998855
No 201
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=28.88 E-value=2.2e+02 Score=22.74 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=28.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 691 QTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 691 KAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL 732 (820)
+.++....+|..+.+.|..+...++..+..-+.|+..|++.|
T Consensus 18 ~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 18 QKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666777777777777777777777777777666544
No 202
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=28.81 E-value=6.2e+02 Score=29.61 Aligned_cols=64 Identities=14% Similarity=0.275 Sum_probs=42.0
Q ss_pred CChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHhh
Q 003431 739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSSM 813 (820)
Q Consensus 739 SSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKEL 813 (820)
.|+.+.+ +-|+-|+ ..|+--|..+|.+|+++|++..+.+...-+...+++. .|.+.++.+++..
T Consensus 383 lse~QA~---aIL~mrL--~rLt~le~~kl~~E~~eL~~~i~~l~~iL~~~~~l~~------~i~~EL~~i~~ky 446 (716)
T 1zvu_A 383 LTETQAE---AILELKL--RHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNN------LLKKELQADAQAY 446 (716)
T ss_dssp CCTTHHH---HHHTCCG--GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH------HHHHHHHHHHHHH
T ss_pred CCHHHHH---HHHhhHH--HHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH------HHHHHHHHHHHHh
Confidence 4555544 3344344 4577888999999999999998888766666655543 4455666665543
No 203
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=28.65 E-value=2.2e+02 Score=25.84 Aligned_cols=49 Identities=14% Similarity=0.285 Sum_probs=22.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 688 DDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 688 eEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
+.+.-+++.-.-|.+-|.+=|+-+..+....++-..++..||..+.+|+
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555554444444444444444555554444443
No 204
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=28.56 E-value=7e+02 Score=28.38 Aligned_cols=44 Identities=16% Similarity=0.376 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHhhc-ccccc
Q 003431 769 IREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSSMF-SSFLI 819 (820)
Q Consensus 769 LKEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKEL~-s~f~i 819 (820)
-++|++|+..+.++... .+ +. ..+..+++++..|-+.|. |+|.|
T Consensus 163 rqql~~l~~l~~~~~~~---~~-~~---~~l~~l~~~~~~ll~~Lv~ssfVV 207 (585)
T 1y1u_A 163 RQQIRRAEHLCQQLPIP---GP-VE---EMLAEVNATITDIISALVTSTFII 207 (585)
T ss_dssp HHHHHHHHHHHTTSCCC---ST-HH---HHHHHHHHHHHHHHHHHHHHTEEE
T ss_pred HHHHHHHHHhhhcCCCC---CC-cc---ccHHHHHHHHHHHHHHHHHhheEe
Confidence 35566666665553322 22 33 344588999988877774 45543
No 205
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=28.31 E-value=6e+02 Score=27.53 Aligned_cols=111 Identities=8% Similarity=0.173 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRA----SYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAIS 740 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRA----ERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASS 740 (820)
+..|.+.++.+|......-..+...-+.+-. ....+.+++.+|..+-..++.....++..++...... +-+..
T Consensus 131 l~~khq~l~~EL~~~e~~i~~v~~~G~~Li~~~Hpas~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~---QF~~D 207 (450)
T 3r6n_A 131 KQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPASDKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYF---QFFEE 207 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHchHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHH
Confidence 4455555555555433332333333333221 1245566666666666666655554444333222222 22246
Q ss_pred hHhHHHHHHhhhhhhhcC-----CCChHHHHHHHHHHHHHHHH
Q 003431 741 VDDIDGSIRNMEHRIAHE-----TLPLKEEKQIIREIKQLKQR 778 (820)
Q Consensus 741 eEEIDarIKsLEyRIQHE-----SLSLkEEKKLLKEIKQLKkT 778 (820)
.+|.++-|+..+-.|... ..++..--.||++-..|++.
T Consensus 208 a~EaesWL~eke~~l~s~y~~D~g~d~~~~e~LLkkh~~le~~ 250 (450)
T 3r6n_A 208 AQSTEAYLKGLQDSIRKKYPCDKNMPLQHLLEQIKELEKEREK 250 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccCcCCCCHHHHHHHHHHHHHHHHH
Confidence 788888888888888765 34555444677665555444
No 206
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=28.07 E-value=1.5e+02 Score=26.05 Aligned_cols=14 Identities=14% Similarity=0.257 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 003431 665 LREQIKAAQSKVDE 678 (820)
Q Consensus 665 LKAKIDeAQkEIqK 678 (820)
=++.|.+++..|++
T Consensus 47 rk~~i~~ie~~ldE 60 (102)
T 2qyw_A 47 KKKLVRDFDEKQQE 60 (102)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444333
No 207
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens}
Probab=27.98 E-value=3.5e+02 Score=24.65 Aligned_cols=108 Identities=9% Similarity=0.174 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDI 744 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEI 744 (820)
++++|+.-+..++.+.+.-..++.... -....+..++..|......+......++..++...+. ..+. ...+++
T Consensus 49 ~~~ei~~~~~~~~~l~~~G~~L~~~~~---~~~~~i~~~l~~L~~~w~~L~~~w~~r~~~L~~~l~l-~~F~--~d~~~~ 122 (185)
T 3lbx_B 49 INAEIETRSKNFSACLELGESLLQRQH---QASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEV-CQFS--RDASVA 122 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HhHHHH
Confidence 445555444555544444333333211 1224566777777777777777666666655543322 2222 255677
Q ss_pred HHHHHhhhhhhhcCCC--ChHHHHHHHHHHHHHHHH
Q 003431 745 DGSIRNMEHRIAHETL--PLKEEKQIIREIKQLKQR 778 (820)
Q Consensus 745 DarIKsLEyRIQHESL--SLkEEKKLLKEIKQLKkT 778 (820)
+.-|...|..+.+..+ +|.+=..+|++-+.+++.
T Consensus 123 ~~Wl~~~e~~L~~~~~g~sl~~ve~LlkkH~~fe~~ 158 (185)
T 3lbx_B 123 EAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKS 158 (185)
T ss_dssp HHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhhhccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 7777788888877766 566667788887777666
No 208
>3htk_B Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=27.70 E-value=2.6e+02 Score=23.11 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHH
Q 003431 667 EQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLE 705 (820)
Q Consensus 667 AKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLK 705 (820)
.||..+.+.|......+.....++...-....++..+|-
T Consensus 4 ~ki~~~e~kI~~~~~~~~~~l~~~~~~~~~l~~~~~el~ 42 (73)
T 3htk_B 4 QKIKDIDDQIQQLLLKQRHLLSKMASSMKSLKNCQKELI 42 (73)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888877777777777776666666655554
No 209
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.34 E-value=4.3e+02 Score=25.52 Aligned_cols=31 Identities=13% Similarity=0.068 Sum_probs=21.1
Q ss_pred cccchhHHHHhhhhhHHHHHHHHHHHHhhcc
Q 003431 785 SIGEHDEVQLAFDQKDQIEEKMKVVLSSMFS 815 (820)
Q Consensus 785 NAAmQAKIQdSLDQKEAIQdQVKlLkKEL~s 815 (820)
|..++.++.+.-.--+.+|+|+..||.-|..
T Consensus 117 ~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~ 147 (154)
T 2ocy_A 117 NKRLTEQLREKDTLLDTLTLQLKNLKKVMHS 147 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556655566889999999887653
No 210
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=27.33 E-value=2.3e+02 Score=28.17 Aligned_cols=67 Identities=9% Similarity=0.234 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhhhHHHHHHH----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 670 KAAQSKVDEKTRSRDAIRDD----------IQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 670 DeAQkEIqKLNQaR~aIieE----------IKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
..|.++.....+.|..|+++ ..+++..+.+|..+|..|.++.=-+...+.....||..|...+..||
T Consensus 27 e~L~~E~e~k~eeKkkiLaER~kPLnid~se~~L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rVnDLr 103 (182)
T 1ytz_I 27 TEIEKEAAAKEVEKQNYLAEHSPPLSLPGSMQELQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKLFDLR 103 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45566666677777777773 57788999999999999988887888888888889999999888887
No 211
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=27.31 E-value=4.3e+02 Score=27.59 Aligned_cols=18 Identities=11% Similarity=0.139 Sum_probs=10.1
Q ss_pred CChHhHHHHHHhhhhhhh
Q 003431 739 ISVDDIDGSIRNMEHRIA 756 (820)
Q Consensus 739 SSeEEIDarIKsLEyRIQ 756 (820)
...+.|..+|..|.-.|.
T Consensus 176 ~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 176 ADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp CCHHHHHHHHHHHTGGGC
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 355566666665555544
No 212
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=26.81 E-value=2e+02 Score=23.16 Aligned_cols=40 Identities=8% Similarity=0.151 Sum_probs=21.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 692 TIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSR 731 (820)
Q Consensus 692 AKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEa 731 (820)
.++....+|..++..|..+...++..+..-+.|+..|++.
T Consensus 19 rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 19 RKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666555555555554443
No 213
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=26.42 E-value=7.5e+02 Score=28.83 Aligned_cols=49 Identities=10% Similarity=0.184 Sum_probs=35.3
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHh
Q 003431 758 ETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSS 812 (820)
Q Consensus 758 ESLSLkEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKE 812 (820)
..|+--|..+|.+|+++|++..+.+...-+...++++ .|.+.++.+++.
T Consensus 632 ~rLt~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~------~i~~el~~i~~~ 680 (692)
T 2xcs_B 632 RRLTGLERDKIEAEYNELLNYISELETILADEEVLLQ------LVRDELTEIRDR 680 (692)
T ss_dssp GGGSTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH------HHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH------HHHHHHHHHHHH
Confidence 5677888899999999999998888766666555443 455566666554
No 214
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=26.37 E-value=4.2e+02 Score=25.04 Aligned_cols=27 Identities=11% Similarity=0.252 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 704 LEAAISDERSARESLKSKRQEIDSVQS 730 (820)
Q Consensus 704 LKALRaE~RqlR~eldEKRKELdpLQE 730 (820)
++.|..+++.+...+..+..|++.|+.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444443
No 215
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=26.33 E-value=3e+02 Score=30.16 Aligned_cols=17 Identities=6% Similarity=0.462 Sum_probs=11.1
Q ss_pred CCCChHHHHHHHHHHHH
Q 003431 659 RYDDENLREQIKAAQSK 675 (820)
Q Consensus 659 RYDDEkLKAKIDeAQkE 675 (820)
...+++|..-+.++.+.
T Consensus 506 ~ls~~ei~~~~~~~~~~ 522 (605)
T 4b9q_A 506 GLNEDEIQKMVRDAEAN 522 (605)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhh
Confidence 45677777777666654
No 216
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=26.08 E-value=3.5e+02 Score=24.32 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=20.2
Q ss_pred ccCCCChHHHHHHHHHHHHHHHHhhhHH
Q 003431 657 VPRYDDENLREQIKAAQSKVDEKTRSRD 684 (820)
Q Consensus 657 VPRYDDEkLKAKIDeAQkEIqKLNQaR~ 684 (820)
+|+=-.++|+..|..-|-.|+.|++.-.
T Consensus 19 ~P~G~~~~lrq~I~DKQ~~i~~Lt~eLq 46 (90)
T 4b6x_A 19 CPRGAGAALRQEIEDKQLMVNNLTDELQ 46 (90)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777789999999998888887765543
No 217
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=25.97 E-value=3.9e+02 Score=24.62 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 003431 686 IRDDIQTIRASYKEYAEKLEAAI 708 (820)
Q Consensus 686 IieEIKAKRAERsELIeQLKALR 708 (820)
+-.+++.++...+.|..+++.++
T Consensus 55 L~~~~~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 55 LEKAKQALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444
No 218
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.93 E-value=3e+02 Score=25.03 Aligned_cols=61 Identities=10% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 672 AQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 672 AQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL 732 (820)
+.+++.++++....+-.++.....++..|..+|..-+..+..+-......-.|++.|-.+|
T Consensus 3 ~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 219
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=25.72 E-value=2.7e+02 Score=22.71 Aligned_cols=41 Identities=7% Similarity=0.245 Sum_probs=28.5
Q ss_pred HhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 679 KTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLK 719 (820)
Q Consensus 679 LNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eld 719 (820)
+++.-..+-.+.+.+..+..+|..++..|+.+...++..+.
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444456667777777777888888888888777776654
No 220
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=25.61 E-value=1.6e+02 Score=27.33 Aligned_cols=23 Identities=4% Similarity=0.011 Sum_probs=10.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 003431 695 ASYKEYAEKLEAAISDERSARES 717 (820)
Q Consensus 695 AERsELIeQLKALRaE~RqlR~e 717 (820)
.++..|..++++++.+++.++.+
T Consensus 7 ~~~~~L~~~i~~l~~~L~~lkqa 29 (122)
T 3viq_A 7 SRRLKLEKEVRNLQEQLITAETA 29 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555444444443
No 221
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=25.61 E-value=2.2e+02 Score=23.10 Aligned_cols=39 Identities=10% Similarity=0.289 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 003431 668 QIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEA 706 (820)
Q Consensus 668 KIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKA 706 (820)
++.+++.++..+...=..+.+.++..|.++..|.++++.
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444444555555555555555555443
No 222
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=25.55 E-value=2.9e+02 Score=23.01 Aligned_cols=14 Identities=36% Similarity=0.814 Sum_probs=7.3
Q ss_pred hhHHHHHHHHHHHH
Q 003431 681 RSRDAIRDDIQTIR 694 (820)
Q Consensus 681 QaR~aIieEIKAKR 694 (820)
.+|..|+.....++
T Consensus 12 ~RR~~in~~f~~Lr 25 (83)
T 1nkp_B 12 KRRDHIKDSFHSLR 25 (83)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555544
No 223
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=25.54 E-value=72 Score=32.96 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=26.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 690 IQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQS 730 (820)
Q Consensus 690 IKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQE 730 (820)
++.++.+...|..+.+.|.+.++.+|.++..-+.|++.|++
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44555666666666666666666666666666667766665
No 224
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=25.42 E-value=5.3e+02 Score=25.89 Aligned_cols=40 Identities=15% Similarity=0.062 Sum_probs=16.2
Q ss_pred eeEEeccCCC-ChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 003431 652 YFLVKVPRYD-DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIR 694 (820)
Q Consensus 652 YYfVRVPRYD-DEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKR 694 (820)
||++|.=.|. ..-+.+.++.... .+|+.|..-+..++...
T Consensus 68 ~~~~K~~Gp~~a~~~D~~~~~i~~---~ln~~r~~~i~~lk~~I 108 (214)
T 2cly_A 68 VYIVKKYGASVGEFADKLNEQKIA---QLEEVKQASIKQIQDAI 108 (214)
T ss_dssp -----------CHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5677765554 4444554444443 47777776555554443
No 225
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=25.19 E-value=1e+02 Score=26.31 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 003431 716 ESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 716 ~eldEKRKELdpLQEaL~KLR 736 (820)
..++.|..++..|+..|.|++
T Consensus 32 ~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 32 KRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555
No 226
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=25.10 E-value=2e+02 Score=23.35 Aligned_cols=42 Identities=5% Similarity=0.075 Sum_probs=29.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 691 QTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 691 KAKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL 732 (820)
+.++....+|..+...|..++..++..+..-+.++..|...|
T Consensus 19 ~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 19 NRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777788777777777777777777666655
No 227
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=24.79 E-value=67 Score=28.02 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 709 SDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 709 aE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
.|.+.+...+++|++||+.|.--++.||
T Consensus 3 kQNKeL~~kl~~Kq~EI~rLnvlvgslR 30 (74)
T 2q6q_A 3 QQNKELNFKLREKQNEIFELKKIAETLR 30 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666666555555
No 228
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=24.72 E-value=4.2e+02 Score=24.52 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 003431 665 LREQIKAAQSKVDEKT 680 (820)
Q Consensus 665 LKAKIDeAQkEIqKLN 680 (820)
+-.+++.++..|.+++
T Consensus 41 F~~~v~~I~~~i~~i~ 56 (180)
T 1s94_A 41 FFEQVEEIRAMIDKIS 56 (180)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 229
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=24.64 E-value=1.7e+02 Score=31.49 Aligned_cols=38 Identities=13% Similarity=0.048 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 003431 669 IKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEA 706 (820)
Q Consensus 669 IDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKA 706 (820)
.+.|..++.++.+...++..+++..++++..+.++|..
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777777776666666533
No 230
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=24.52 E-value=3.5e+02 Score=23.46 Aligned_cols=29 Identities=3% Similarity=0.212 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 003431 666 REQIKAAQSKVDEKTRSRDAIRDDIQTIR 694 (820)
Q Consensus 666 KAKIDeAQkEIqKLNQaR~aIieEIKAKR 694 (820)
...|+.+..+.+.+++.-.++-+++..++
T Consensus 3 ~k~v~~l~~E~eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 3 TSDVANLANEKEELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666665555555444544444444
No 231
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=24.49 E-value=1.2e+02 Score=26.07 Aligned_cols=44 Identities=11% Similarity=0.052 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAI 708 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALR 708 (820)
|+.||.-.+.-|+.||+.=..-...|..++..++-|..+++++.
T Consensus 19 LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 19 LETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444444444444444444444444444444444444433
No 232
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=24.42 E-value=2e+02 Score=29.06 Aligned_cols=42 Identities=10% Similarity=0.068 Sum_probs=22.8
Q ss_pred eEEeccCCC-Ch--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 003431 653 FLVKVPRYD-DE--NLREQIKAAQSKVDEKTRSRDAIRDDIQTIR 694 (820)
Q Consensus 653 YfVRVPRYD-DE--kLKAKIDeAQkEIqKLNQaR~aIieEIKAKR 694 (820)
.|.+++-|+ .. .....|..++.+|+.+.+....+..++.+..
T Consensus 209 ~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~ 253 (357)
T 3rrk_A 209 GLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLS 253 (357)
T ss_dssp TCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555443 22 4566666777776666555555544444433
No 233
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=24.33 E-value=1.4e+02 Score=30.03 Aligned_cols=42 Identities=24% Similarity=0.218 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEA 706 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKA 706 (820)
+..-++.+++++++....|..|+...+.+-...+..+..|-.
T Consensus 20 i~~iF~~~~~~Ld~~~d~REriik~sRdIt~~sk~~I~~Lhr 61 (249)
T 3axj_A 20 NLDIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQI 61 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456678889999999999999988888877776666655543
No 234
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=24.31 E-value=1.2e+02 Score=27.30 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHhhcc
Q 003431 765 EKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSSMFS 815 (820)
Q Consensus 765 EKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKEL~s 815 (820)
|.||-++|..+...|.+|...-....+|+ ++-++.|..|+.+|++
T Consensus 42 E~ki~~Qi~Emq~Ir~tvyeLE~~h~kmK------q~YEeEI~rLr~eLe~ 86 (92)
T 3vp9_A 42 DFKMNQQLAEMQQIRNTVYERELTHRKMK------DAYEEEIKHLKLGLEQ 86 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 34577899999999999998887777774 4566888899999875
No 235
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=24.23 E-value=4.8e+02 Score=24.96 Aligned_cols=41 Identities=10% Similarity=0.308 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 696 SYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 696 ERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
+|..|...|.+=-++.+.|.+.++...+++..|-..|..++
T Consensus 46 qR~rYK~~F~~dy~EYk~Lhaev~~v~~~F~~Ld~~L~~l~ 86 (140)
T 1xaw_A 46 QRQLYKRNFDTGLQEYKSLQSVLDEINKELSRLDKELDDYR 86 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34445555555555566666666666666666666665555
No 236
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=24.18 E-value=2.9e+02 Score=22.41 Aligned_cols=15 Identities=0% Similarity=0.186 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 003431 700 YAEKLEAAISDERSA 714 (820)
Q Consensus 700 LIeQLKALRaE~Rql 714 (820)
|..++..|+.+...+
T Consensus 42 L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 42 LQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 237
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=23.87 E-value=3.5e+02 Score=23.30 Aligned_cols=31 Identities=6% Similarity=0.173 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 706 AAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 706 ALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
.|..+...+....+.-+.+-..|+..|..|+
T Consensus 56 ~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 56 SVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333333334444444444444443
No 238
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=23.65 E-value=2.6e+02 Score=26.88 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003431 706 AAISDERSARESLKSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 706 ALRaE~RqlR~eldEKRKELdpLQEaL~KLR 736 (820)
+...+++..+..+....++|+.|++-|...+
T Consensus 51 P~~~ql~~v~kdi~~a~~eL~~m~~~i~~ek 81 (141)
T 3okq_A 51 PAKKKLETVSKDLENAQADVLKLQEFIDTEK 81 (141)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344445555555556666666666665555
No 239
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.56 E-value=1.1e+02 Score=32.78 Aligned_cols=15 Identities=47% Similarity=0.474 Sum_probs=10.5
Q ss_pred ChHHHHHHHHHHHHH
Q 003431 761 PLKEEKQIIREIKQL 775 (820)
Q Consensus 761 SLkEEKKLLKEIKQL 775 (820)
.|.+-|+-|+|+=.+
T Consensus 176 Gl~~~k~~l~e~v~~ 190 (428)
T 4b4t_K 176 GLDMQKQEIREAVEL 190 (428)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 377778888776555
No 240
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=23.51 E-value=8e+02 Score=27.32 Aligned_cols=64 Identities=8% Similarity=0.251 Sum_probs=41.3
Q ss_pred CChHhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhhhHHHHHHHHHHHHhh
Q 003431 739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKVVLSSM 813 (820)
Q Consensus 739 SSeEEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQLKkTREKViANAAmQAKIQdSLDQKEAIQdQVKlLkKEL 813 (820)
.|..+.++- |+ |.-..|+--|..+|.+|+++|++....+...-+...+++ .-|.+.++.+++..
T Consensus 397 lse~Qa~aI---l~--mrL~rLt~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~------~~i~~el~~i~~~y 460 (470)
T 3ilw_A 397 IDEIQAQAI---LD--MQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQR------GIVRDELAEIVDRH 460 (470)
T ss_dssp CCHHHHHHH---HT--CBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH------HHHHHHHHHHHHHH
T ss_pred CCHHHHHHH---HH--hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH------HHHHHHHHHHHHHh
Confidence 455555432 33 334457788899999999999999888776655554443 34556666666543
No 241
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=23.42 E-value=3e+02 Score=25.79 Aligned_cols=27 Identities=4% Similarity=0.108 Sum_probs=19.8
Q ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHH
Q 003431 669 IKAAQSKVDEK-TRSRDAIRDDIQTIRA 695 (820)
Q Consensus 669 IDeAQkEIqKL-NQaR~aIieEIKAKRA 695 (820)
++.|+++++.| +..|-++..+++..|+
T Consensus 11 ~~~L~~EL~~L~~~~R~~i~~~i~~Ar~ 38 (158)
T 2p4v_A 11 YEKLKQELNYLWREERPEVTKKVTWAAS 38 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 45667777777 4578888888887774
No 242
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=22.90 E-value=4.2e+02 Score=24.47 Aligned_cols=80 Identities=20% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHHHHHhhhhhhhcCCCChHHHHHHH--------
Q 003431 698 KEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQII-------- 769 (820)
Q Consensus 698 sELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNASSeEEIDarIKsLEyRIQHESLSLkEEKKLL-------- 769 (820)
.+.+.+.+.|-.+.++++..+..-.++.+-|...+...+ ++=-..|..|-.+++++=..|.+=.+..
T Consensus 2 ~~t~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~-----E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq 76 (112)
T 1x79_B 2 AETRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSS-----EDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQ 76 (112)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 003431 770 REIKQLKQRREQI 782 (820)
Q Consensus 770 KEIKQLKkTREKV 782 (820)
.++.+|...|++|
T Consensus 77 ~qL~~Lt~~Re~V 89 (112)
T 1x79_B 77 EQMAVLMQSREQV 89 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
No 243
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=22.81 E-value=1.3e+02 Score=27.71 Aligned_cols=51 Identities=4% Similarity=0.008 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CChHhHHHHHHhhhh
Q 003431 703 KLEAAISDERSARESLKSKRQEIDSVQSRINMMKNA--ISVDDIDGSIRNMEH 753 (820)
Q Consensus 703 QLKALRaE~RqlR~eldEKRKELdpLQEaL~KLRNA--SSeEEIDarIKsLEy 753 (820)
++..|..+...++..+..-..-++.|...+..+... ...+.+...|+.|-|
T Consensus 81 ~~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~Li~~~~~ 133 (146)
T 3hh0_A 81 FLRQMHFQREVLLAEQERIAKVLSHMDEMTKKFQKEERVNVALFSSFLQTFIW 133 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHH
Confidence 334444444333333333333333333333333321 345666666666655
No 244
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=22.78 E-value=1.5e+02 Score=28.34 Aligned_cols=56 Identities=5% Similarity=0.127 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHhhcCCChHhHHHHHHhhhhhh
Q 003431 698 KEYAEKLEAAISDERSARESLKSKRQE----------------IDSVQSRINMMKNAISVDDIDGSIRNMEHRI 755 (820)
Q Consensus 698 sELIeQLKALRaE~RqlR~eldEKRKE----------------LdpLQEaL~KLRNASSeEEIDarIKsLEyRI 755 (820)
.+.+++-+.|+.+.+-|+........+ .+.+|...+++-+ -.-+||-+|+.+.|.+
T Consensus 80 ~eaia~rd~L~~~~~~l~~~~~~a~~~~~rys~sEIk~vs~vdv~~~qk~ad~l~k--~~r~Ld~~IQ~~Nw~~ 151 (154)
T 3kdq_A 80 ADALSVRDALLKKRTLYSDLADQLTSRQDRYSRSEIKYVATMDAREIRKKADLAAK--EYRQLDVDIQRLNWQT 151 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSTTSCCEEESSCHHHHHHHHHHHHH--HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhheeccCHHHHHHHHHHHHH--HHHHHHHHHHHHhchh
Confidence 355566666666666666655554321 2333333333331 3345666666666654
No 245
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=22.65 E-value=3.1e+02 Score=22.31 Aligned_cols=46 Identities=20% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 667 EQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLK 719 (820)
Q Consensus 667 AKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eld 719 (820)
+||++|..+|+.|+..=.+|...+.++|. .+.++..+-......++
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~-------~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARS-------DAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhh
No 246
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=22.52 E-value=1.3e+02 Score=29.26 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=18.1
Q ss_pred hHHHHhhh--hhH-HHHHHHHHHHHhhc
Q 003431 790 DEVQLAFD--QKD-QIEEKMKVVLSSMF 814 (820)
Q Consensus 790 AKIQdSLD--QKE-AIQdQVKlLkKEL~ 814 (820)
.++++.|+ ||| -+++|+|.|++||-
T Consensus 222 ~~v~~~~~k~Qrey~LrEQlk~IqkELG 249 (252)
T 3ljc_A 222 NRVKKQMEKSQREYYLNEQMKAIQKELG 249 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34445554 566 78999999999984
No 247
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=22.42 E-value=2.7e+02 Score=28.05 Aligned_cols=34 Identities=12% Similarity=0.281 Sum_probs=22.7
Q ss_pred HhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHH
Q 003431 742 DDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQL 775 (820)
Q Consensus 742 EEIDarIKsLEyRIQHESLSLkEEKKLLKEIKQL 775 (820)
.+|....+.|....+...|+..+++.|++.+++=
T Consensus 226 ~~i~~~q~kl~~ie~~~~l~~~~~~~l~~~~~~g 259 (339)
T 1sig_A 226 EEVHRALQKLQQIEEETGLTIEQVKDINRRMSIG 259 (339)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Confidence 3444444444444456689999999999888654
No 248
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=22.38 E-value=8.6e+02 Score=27.28 Aligned_cols=35 Identities=6% Similarity=0.124 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 686 IRDDIQTIRASYKEYAEKLEAAISDERSARESLKS 720 (820)
Q Consensus 686 IieEIKAKRAERsELIeQLKALRaE~RqlR~eldE 720 (820)
|...+..++....++..+++.+..+..+++....+
T Consensus 350 i~~~l~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~ 384 (695)
T 2j69_A 350 VARRIPLLEQDVNELKKRIDSVEPEFNKLTGIRDE 384 (695)
T ss_dssp HHHHHHHHTSCSHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555444444444333
No 249
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=22.34 E-value=75 Score=23.02 Aligned_cols=18 Identities=17% Similarity=0.455 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 003431 719 KSKRQEIDSVQSRINMMK 736 (820)
Q Consensus 719 dEKRKELdpLQEaL~KLR 736 (820)
++-.+|++-||+.|++||
T Consensus 4 delykeledlqerlrklr 21 (27)
T 3twe_A 4 DELYKELEDLQERLRKLR 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455678888888888888
No 250
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=22.30 E-value=1.4e+02 Score=29.55 Aligned_cols=14 Identities=14% Similarity=0.515 Sum_probs=6.7
Q ss_pred HHHHhHHHHHHHHH
Q 003431 692 TIRASYKEYAEKLE 705 (820)
Q Consensus 692 AKRAERsELIeQLK 705 (820)
..|.++..|.+.|+
T Consensus 92 e~r~~l~Py~~el~ 105 (243)
T 2a01_A 92 EVKAKVQPYLDDFQ 105 (243)
T ss_dssp CSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555544443
No 251
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=21.00 E-value=3.9e+02 Score=24.71 Aligned_cols=60 Identities=22% Similarity=0.351 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEID 726 (820)
Q Consensus 663 EkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELd 726 (820)
..|+..|+.+...|.++......+..... .-..+..+|..+..+...+-..+..+++.|+
T Consensus 46 ~~I~~~i~~i~~~v~~l~~~~~~~L~~~~----~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~ 105 (180)
T 1s94_A 46 EEIRAMIDKISDNVDAVKKKHSDILSAPQ----TDDQMKEELEELMTDIKRTANKVRGKLKTIE 105 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777766666555443222 1223455566666555555555555555444
No 252
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=20.92 E-value=2.5e+02 Score=25.59 Aligned_cols=44 Identities=25% Similarity=0.306 Sum_probs=22.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003431 692 TIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (820)
Q Consensus 692 AKRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL~KL 735 (820)
+++..+.+|..+|..|.++.=-+...+.....||..|...+..|
T Consensus 46 ~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 46 KLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 44555555555555555554444444444445555555544444
No 253
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.89 E-value=1.5e+02 Score=25.27 Aligned_cols=56 Identities=13% Similarity=0.186 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEID 726 (820)
Q Consensus 665 LKAKIDeAQkEIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~RqlR~eldEKRKELd 726 (820)
=++.-..||..+...++.+.. .+. .+..+|......|..+...++..+..-..|+.
T Consensus 12 R~~qNR~AQRafReRK~~~i~---~LE---~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 12 RKAQNRAAQRAFRKRKEDHLK---ALE---TQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666665544444333 222 22222323333344444444444444444443
No 254
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=20.78 E-value=73 Score=29.23 Aligned_cols=13 Identities=15% Similarity=0.391 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 003431 665 LREQIKAAQSKVD 677 (820)
Q Consensus 665 LKAKIDeAQkEIq 677 (820)
++.+|+.+...+.
T Consensus 103 l~~ri~~l~~~l~ 115 (151)
T 2zdi_C 103 LEKRLKEYDEAIK 115 (151)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444433333
No 255
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=20.77 E-value=4.3e+02 Score=23.13 Aligned_cols=79 Identities=14% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhcCCChHhHHHHHH
Q 003431 675 KVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERS-----ARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIR 749 (820)
Q Consensus 675 EIqKLNQaR~aIieEIKAKRAERsELIeQLKALRaE~Rq-----lR~eldEKRKELdpLQEaL~KLRNASSeEEIDarIK 749 (820)
+|+.||.+=...+++++.+-..-+.|..++..++.+... |...+..-|+.++.+...-.+|- .-.+-+...+.
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~--~e~dnl~~~~~ 87 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVE--VERDNLAEDIM 87 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q ss_pred hhhhhh
Q 003431 750 NMEHRI 755 (820)
Q Consensus 750 sLEyRI 755 (820)
.|.+++
T Consensus 88 ~~k~KL 93 (93)
T 3s4r_A 88 RLREKL 93 (93)
T ss_dssp HHHHHC
T ss_pred HHHhhC
No 256
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=20.63 E-value=3.9e+02 Score=23.08 Aligned_cols=40 Identities=8% Similarity=0.170 Sum_probs=27.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003431 693 IRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (820)
Q Consensus 693 KRAERsELIeQLKALRaE~RqlR~eldEKRKELdpLQEaL 732 (820)
.|.+-.++..+...|..++..|+..+..-.+|+..|+..|
T Consensus 34 rk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 34 AKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344446667777888888888877777777766666544
No 257
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=20.52 E-value=7.8e+02 Score=26.07 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=7.2
Q ss_pred HhhhhhHHHHHHHH
Q 003431 794 LAFDQKDQIEEKMK 807 (820)
Q Consensus 794 dSLDQKEAIQdQVK 807 (820)
+-+||++.+-+++-
T Consensus 133 dLlDqRD~ll~eLS 146 (463)
T 2d4y_A 133 DLLDQRDQLVSELN 146 (463)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHH
Confidence 45555555554443
No 258
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=20.40 E-value=92 Score=24.84 Aligned_cols=27 Identities=30% Similarity=0.644 Sum_probs=20.1
Q ss_pred HhHHHHHHhhhhhhhcCCCChHHHHHHHHHH
Q 003431 742 DDIDGSIRNMEHRIAHETLPLKEEKQIIREI 772 (820)
Q Consensus 742 EEIDarIKsLEyRIQHESLSLkEEKKLLKEI 772 (820)
.+++.++..||.|+.| |.-|-++||+|
T Consensus 13 k~le~~naeLEervst----Lq~EN~mLRqv 39 (42)
T 2oqq_A 13 KDLENKNSELEERLST----LQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHhHHHHHHH
Confidence 4566677777777764 78888888887
No 259
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=20.37 E-value=5.4e+02 Score=24.18 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=13.7
Q ss_pred ChHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 003431 662 DENLREQIKAAQSKVDEKTRSRDAIRDD 689 (820)
Q Consensus 662 DEkLKAKIDeAQkEIqKLNQaR~aIieE 689 (820)
.+.++.-+..|+..+..+...|..+-.+
T Consensus 9 ~e~lr~~~~~L~~~~r~Ldr~~~kle~~ 36 (179)
T 2gd5_A 9 KELVNEWSLKIRKEMRVVDRQIRDIQRE 36 (179)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555454444444333
No 260
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=20.26 E-value=7.3e+02 Score=25.63 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=12.4
Q ss_pred CCChHHHHHHHHHHH
Q 003431 660 YDDENLREQIKAAQS 674 (820)
Q Consensus 660 YDDEkLKAKIDeAQk 674 (820)
...++|+.|+.+|..
T Consensus 42 ~SleEIqkKLeAAEE 56 (240)
T 4f61_I 42 PSLEEIQKKLEAAEE 56 (240)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 558899999999855
No 261
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=20.21 E-value=4e+02 Score=24.64 Aligned_cols=27 Identities=4% Similarity=0.081 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 003431 669 IKAAQSKVDEKTRSRDAIRDDIQTIRA 695 (820)
Q Consensus 669 IDeAQkEIqKLNQaR~aIieEIKAKRA 695 (820)
.+.|+++++.+...|-.+..+++..|+
T Consensus 12 ~~~L~~el~~~~~~r~~~~~~i~~A~~ 38 (156)
T 2f23_A 12 YERLMQQLERERERLQEATKILQELME 38 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666777766777778777777764
No 262
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=20.03 E-value=49 Score=35.33 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=30.0
Q ss_pred CceeEEec-cCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 003431 650 PFYFLVKV-PRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS 696 (820)
Q Consensus 650 sFYYfVRV-PRYDDEkLKAKIDeAQkEIqKLNQaR~aIieEIKAKRAE 696 (820)
..||.-+. +..+-.+++.+||.++.+|-+|-.+|..+..++-..|..
T Consensus 17 ~~~~~~~~M~~~~L~~lR~~ID~ID~~il~LL~eR~~~~~~Va~~K~~ 64 (385)
T 3nvt_A 17 NLYFQSNAMVNTNLEELRTQVDQLNIDLLELISKRANLVQEIGKIKGT 64 (385)
T ss_dssp ---------------CCTTTTTHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred chhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45555554 123677899999999999999999999999998887744
Done!