Query 003433
Match_columns 820
No_of_seqs 906 out of 4368
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 23:20:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.1E-73 2.3E-78 678.4 55.6 648 127-818 126-823 (857)
2 PLN03218 maturation of RBCL 1; 100.0 2.4E-71 5.2E-76 643.0 69.8 577 156-790 370-960 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 3.3E-68 7.1E-73 616.5 57.2 544 157-818 88-661 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 2.3E-66 5E-71 615.7 64.2 591 157-810 122-718 (857)
5 PLN03218 maturation of RBCL 1; 100.0 2.4E-64 5.1E-69 584.8 66.9 508 138-674 385-909 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 2.5E-58 5.4E-63 534.0 54.6 463 126-675 91-558 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.8E-34 4E-39 350.9 71.6 572 149-771 322-894 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-33 2.4E-38 344.1 76.5 629 155-810 260-898 (899)
9 PRK11447 cellulose synthase su 100.0 1.6E-25 3.6E-30 272.6 68.9 617 135-771 41-734 (1157)
10 PRK11447 cellulose synthase su 100.0 4.1E-25 8.9E-30 269.1 68.1 568 160-741 116-739 (1157)
11 KOG4626 O-linked N-acetylgluco 100.0 3.4E-25 7.4E-30 226.3 39.8 459 143-686 35-497 (966)
12 PRK09782 bacteriophage N4 rece 100.0 1E-22 2.2E-27 236.4 64.8 548 137-745 59-709 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 8.2E-24 1.8E-28 216.3 38.2 451 197-730 52-507 (966)
14 PRK09782 bacteriophage N4 rece 99.9 2.1E-21 4.6E-26 225.4 61.9 550 131-742 87-740 (987)
15 KOG2002 TPR-containing nuclear 99.9 2.3E-21 5.1E-26 209.4 54.6 558 158-746 164-749 (1018)
16 TIGR00990 3a0801s09 mitochondr 99.9 4.6E-20 1E-24 211.3 51.7 428 195-743 129-572 (615)
17 TIGR00990 3a0801s09 mitochondr 99.9 1.5E-18 3.2E-23 198.9 55.4 440 157-677 128-574 (615)
18 KOG2002 TPR-containing nuclear 99.9 7.6E-19 1.7E-23 190.2 48.3 544 154-742 197-798 (1018)
19 PRK11788 tetratricopeptide rep 99.9 3.3E-20 7.2E-25 201.9 36.9 309 238-560 45-363 (389)
20 PRK11788 tetratricopeptide rep 99.9 6.7E-20 1.4E-24 199.5 36.8 301 202-510 44-354 (389)
21 PRK15174 Vi polysaccharide exp 99.9 9.7E-19 2.1E-23 199.5 46.3 329 199-537 48-380 (656)
22 PRK15174 Vi polysaccharide exp 99.9 2.8E-18 6.2E-23 195.7 48.1 335 158-505 44-383 (656)
23 PRK10049 pgaA outer membrane p 99.9 7.8E-18 1.7E-22 196.4 47.0 412 153-580 12-463 (765)
24 PRK10049 pgaA outer membrane p 99.9 2.1E-17 4.5E-22 192.9 46.5 406 274-745 26-459 (765)
25 PRK14574 hmsH outer membrane p 99.8 1E-15 2.2E-20 174.8 52.4 436 133-580 45-520 (822)
26 PRK14574 hmsH outer membrane p 99.8 3.9E-15 8.5E-20 170.0 54.6 472 155-712 33-518 (822)
27 KOG2076 RNA polymerase III tra 99.8 1.4E-13 3E-18 149.1 58.5 565 163-744 146-771 (895)
28 KOG2003 TPR repeat-containing 99.8 1.5E-16 3.4E-21 157.5 30.8 468 159-682 204-697 (840)
29 KOG0495 HAT repeat protein [RN 99.8 4.7E-13 1E-17 139.2 51.5 383 172-577 362-752 (913)
30 KOG2076 RNA polymerase III tra 99.8 1.3E-12 2.8E-17 141.8 54.6 358 135-499 152-551 (895)
31 KOG0495 HAT repeat protein [RN 99.7 7.7E-12 1.7E-16 130.4 54.6 522 155-744 318-848 (913)
32 KOG2003 TPR repeat-containing 99.7 1.3E-13 2.8E-18 137.0 33.2 408 162-578 243-694 (840)
33 KOG4422 Uncharacterized conser 99.7 1.7E-12 3.7E-17 128.6 39.0 392 140-558 193-610 (625)
34 KOG1915 Cell cycle control pro 99.7 1.9E-11 4E-16 123.0 46.6 399 158-572 75-499 (677)
35 KOG4422 Uncharacterized conser 99.7 2.5E-12 5.3E-17 127.6 39.8 403 160-572 120-589 (625)
36 KOG0547 Translocase of outer m 99.7 2.7E-13 5.8E-18 136.7 31.3 220 450-742 337-566 (606)
37 KOG1155 Anaphase-promoting com 99.6 7.2E-12 1.6E-16 125.9 39.9 360 190-566 161-529 (559)
38 KOG1915 Cell cycle control pro 99.6 6.8E-10 1.5E-14 111.9 52.5 496 195-736 75-619 (677)
39 KOG1155 Anaphase-promoting com 99.6 6.4E-11 1.4E-15 119.2 42.6 331 223-572 159-494 (559)
40 KOG2047 mRNA splicing factor [ 99.6 3E-09 6.5E-14 111.4 56.2 530 155-730 101-711 (835)
41 PRK10747 putative protoheme IX 99.6 7.8E-12 1.7E-16 134.7 38.2 285 276-573 97-390 (398)
42 KOG0547 Translocase of outer m 99.6 2.4E-11 5.2E-16 122.9 37.4 399 159-575 118-568 (606)
43 TIGR00540 hemY_coli hemY prote 99.6 6.4E-12 1.4E-16 136.2 34.7 291 275-573 96-399 (409)
44 KOG1126 DNA-binding cell divis 99.6 9.8E-13 2.1E-17 138.5 27.0 287 208-506 334-623 (638)
45 TIGR00540 hemY_coli hemY prote 99.6 7.8E-12 1.7E-16 135.6 34.3 292 204-502 95-398 (409)
46 PRK10747 putative protoheme IX 99.6 2.8E-11 6.1E-16 130.4 38.2 127 403-536 262-388 (398)
47 KOG1126 DNA-binding cell divis 99.6 7.4E-13 1.6E-17 139.4 24.7 287 279-577 334-624 (638)
48 PF13429 TPR_15: Tetratricopep 99.6 1.5E-14 3.3E-19 148.9 12.0 259 199-465 14-274 (280)
49 PF13429 TPR_15: Tetratricopep 99.5 3.4E-14 7.3E-19 146.3 12.9 259 306-571 15-275 (280)
50 KOG1173 Anaphase-promoting com 99.5 1.3E-10 2.8E-15 120.1 38.1 505 155-720 15-530 (611)
51 COG2956 Predicted N-acetylgluc 99.5 3.4E-11 7.3E-16 115.8 31.2 270 169-449 48-325 (389)
52 KOG1174 Anaphase-promoting com 99.5 1.2E-09 2.6E-14 108.4 39.9 274 368-681 231-507 (564)
53 COG2956 Predicted N-acetylgluc 99.5 1.6E-10 3.5E-15 111.2 32.8 269 279-554 50-325 (389)
54 KOG1173 Anaphase-promoting com 99.5 1.3E-10 2.9E-15 120.0 34.3 489 195-744 18-520 (611)
55 KOG2047 mRNA splicing factor [ 99.5 2.4E-08 5.1E-13 104.8 50.8 508 194-742 103-687 (835)
56 COG3071 HemY Uncharacterized e 99.5 1.8E-09 4E-14 107.5 37.4 287 276-573 97-390 (400)
57 KOG4162 Predicted calmodulin-b 99.5 4.3E-08 9.4E-13 105.5 49.7 499 237-771 236-777 (799)
58 KOG1127 TPR repeat-containing 99.4 2E-08 4.4E-13 110.3 45.4 293 421-742 800-1104(1238)
59 KOG1156 N-terminal acetyltrans 99.4 3.7E-08 7.9E-13 103.9 45.6 152 169-327 20-171 (700)
60 COG3071 HemY Uncharacterized e 99.4 1.5E-09 3.2E-14 108.1 33.6 285 206-501 97-388 (400)
61 KOG3785 Uncharacterized conser 99.4 3.5E-08 7.5E-13 96.2 41.5 373 160-565 61-449 (557)
62 PRK12370 invasion protein regu 99.4 2.8E-10 6.1E-15 128.3 30.9 149 209-361 320-468 (553)
63 KOG4162 Predicted calmodulin-b 99.4 9.1E-08 2E-12 103.0 47.0 430 294-744 318-785 (799)
64 KOG1156 N-terminal acetyltrans 99.3 3.7E-08 8.1E-13 103.9 40.2 407 141-567 29-462 (700)
65 KOG3785 Uncharacterized conser 99.3 5.7E-08 1.2E-12 94.8 38.4 386 151-568 86-485 (557)
66 KOG4318 Bicoid mRNA stability 99.3 9.7E-09 2.1E-13 111.5 36.6 246 218-489 15-286 (1088)
67 KOG1129 TPR repeat-containing 99.3 1.7E-09 3.8E-14 104.0 26.5 226 162-396 229-456 (478)
68 TIGR02521 type_IV_pilW type IV 99.3 1.3E-09 2.8E-14 109.1 27.4 199 334-536 31-230 (234)
69 PRK12370 invasion protein regu 99.3 7.9E-10 1.7E-14 124.7 28.5 250 243-504 276-536 (553)
70 KOG2376 Signal recognition par 99.3 7.4E-08 1.6E-12 100.6 39.8 457 162-705 18-518 (652)
71 TIGR02521 type_IV_pilW type IV 99.3 1.5E-09 3.2E-14 108.7 27.4 199 299-501 31-230 (234)
72 KOG4318 Bicoid mRNA stability 99.3 1.7E-09 3.7E-14 117.2 28.3 278 249-563 11-290 (1088)
73 KOG1840 Kinesin light chain [C 99.3 2E-09 4.4E-14 115.2 28.6 248 405-739 200-476 (508)
74 KOG1129 TPR repeat-containing 99.3 4.3E-10 9.3E-15 108.1 20.3 245 368-685 222-469 (478)
75 KOG1174 Anaphase-promoting com 99.3 1.8E-07 4E-12 93.2 38.5 269 298-576 231-503 (564)
76 PF12569 NARP1: NMDA receptor- 99.3 3.9E-07 8.4E-12 99.3 44.3 263 157-431 5-289 (517)
77 PF12569 NARP1: NMDA receptor- 99.3 1.4E-08 3.1E-13 110.3 33.2 292 199-502 10-333 (517)
78 KOG2376 Signal recognition par 99.2 7.3E-07 1.6E-11 93.4 39.0 455 198-737 17-515 (652)
79 KOG1840 Kinesin light chain [C 99.2 1.6E-08 3.4E-13 108.6 27.9 132 443-574 329-480 (508)
80 KOG0548 Molecular co-chaperone 99.2 6.3E-08 1.4E-12 100.3 31.0 105 306-414 9-114 (539)
81 KOG3616 Selective LIM binding 99.2 1.3E-06 2.9E-11 92.8 40.4 112 690-807 1007-1129(1636)
82 KOG0548 Molecular co-chaperone 99.2 1.5E-07 3.2E-12 97.6 32.8 416 162-648 8-462 (539)
83 KOG3617 WD40 and TPR repeat-co 99.2 8.2E-07 1.8E-11 95.7 39.0 229 166-431 738-994 (1416)
84 KOG1127 TPR repeat-containing 99.2 1E-06 2.2E-11 97.3 40.5 421 279-738 473-909 (1238)
85 PF13041 PPR_2: PPR repeat fam 99.2 1.1E-10 2.3E-15 84.0 7.0 50 507-556 1-50 (50)
86 KOG4340 Uncharacterized conser 99.2 1.9E-07 4.2E-12 89.1 30.5 50 696-749 401-450 (459)
87 PRK11189 lipoprotein NlpI; Pro 99.2 3.1E-08 6.7E-13 102.2 27.9 224 166-399 36-266 (296)
88 PF13041 PPR_2: PPR repeat fam 99.1 1.8E-10 3.8E-15 82.9 6.5 49 367-415 1-49 (50)
89 PRK11189 lipoprotein NlpI; Pro 99.1 1.3E-07 2.9E-12 97.5 29.1 148 279-430 41-191 (296)
90 KOG0985 Vesicle coat protein c 99.1 4.1E-05 9E-10 84.9 47.7 17 720-736 1511-1527(1666)
91 COG3063 PilF Tfp pilus assembl 99.1 1.3E-07 2.8E-12 87.5 24.6 198 159-397 38-235 (250)
92 COG3063 PilF Tfp pilus assembl 99.1 1.1E-07 2.4E-12 88.1 23.9 198 374-575 40-238 (250)
93 KOG0985 Vesicle coat protein c 99.1 4.8E-06 1E-10 92.0 40.1 205 334-573 1104-1308(1666)
94 KOG3616 Selective LIM binding 99.1 2.3E-06 5.1E-11 91.1 36.6 192 341-566 739-930 (1636)
95 cd05804 StaR_like StaR_like; a 99.1 9.7E-07 2.1E-11 94.7 35.4 88 271-360 122-212 (355)
96 KOG3617 WD40 and TPR repeat-co 99.0 1E-05 2.2E-10 87.6 41.1 328 140-500 742-1171(1416)
97 KOG0624 dsRNA-activated protei 99.0 4.6E-06 1E-10 81.5 35.0 203 346-576 167-373 (504)
98 cd05804 StaR_like StaR_like; a 99.0 1.1E-06 2.3E-11 94.4 35.0 202 191-398 4-215 (355)
99 KOG1914 mRNA cleavage and poly 99.0 1.9E-05 4.1E-10 82.1 39.5 421 146-575 10-503 (656)
100 KOG0624 dsRNA-activated protei 99.0 1.2E-06 2.6E-11 85.4 29.0 325 336-711 40-374 (504)
101 PRK04841 transcriptional regul 99.0 2.2E-06 4.8E-11 104.3 38.9 379 195-576 343-763 (903)
102 PRK04841 transcriptional regul 98.9 3.7E-06 8E-11 102.4 38.7 339 199-538 380-760 (903)
103 KOG2053 Mitochondrial inherita 98.9 0.00023 5E-09 78.8 48.4 224 166-399 19-256 (932)
104 KOG1125 TPR repeat-containing 98.9 2.3E-07 4.9E-12 97.1 20.0 235 447-744 293-529 (579)
105 PLN02789 farnesyltranstransfer 98.8 4.4E-06 9.6E-11 86.0 26.7 211 162-381 43-267 (320)
106 KOG1125 TPR repeat-containing 98.8 7.4E-07 1.6E-11 93.3 20.9 256 199-462 291-565 (579)
107 KOG4340 Uncharacterized conser 98.7 3E-05 6.5E-10 74.5 28.4 261 155-428 43-334 (459)
108 PLN02789 farnesyltranstransfer 98.7 1.3E-05 2.7E-10 82.7 27.8 206 204-416 48-267 (320)
109 PF04733 Coatomer_E: Coatomer 98.7 3.1E-07 6.6E-12 93.3 15.5 80 385-466 183-263 (290)
110 KOG1070 rRNA processing protei 98.7 7.7E-06 1.7E-10 93.7 27.1 245 322-572 1447-1699(1710)
111 PF04733 Coatomer_E: Coatomer 98.7 7.1E-07 1.5E-11 90.7 17.6 148 379-537 112-264 (290)
112 KOG1070 rRNA processing protei 98.7 1.4E-05 3.1E-10 91.6 27.5 222 141-367 1443-1667(1710)
113 PRK15359 type III secretion sy 98.6 3.9E-07 8.4E-12 82.6 12.2 111 631-746 14-125 (144)
114 TIGR03302 OM_YfiO outer membra 98.6 1E-05 2.2E-10 81.0 21.4 102 155-256 32-143 (235)
115 KOG1128 Uncharacterized conser 98.6 3.9E-06 8.4E-11 90.3 18.8 218 336-574 400-617 (777)
116 PF12854 PPR_1: PPR repeat 98.5 1E-07 2.2E-12 61.3 4.1 34 639-672 1-34 (34)
117 KOG2053 Mitochondrial inherita 98.5 0.0045 9.8E-08 69.0 46.5 217 240-468 21-255 (932)
118 PRK10370 formate-dependent nit 98.5 2.6E-05 5.5E-10 74.9 20.8 148 376-538 23-173 (198)
119 KOG1128 Uncharacterized conser 98.5 5.6E-06 1.2E-10 89.1 17.5 215 303-538 402-616 (777)
120 TIGR03302 OM_YfiO outer membra 98.5 1.6E-05 3.5E-10 79.5 20.1 186 333-537 32-231 (235)
121 PF12854 PPR_1: PPR repeat 98.5 2.7E-07 5.8E-12 59.4 4.5 32 329-360 2-33 (34)
122 PRK14720 transcript cleavage f 98.5 3E-05 6.5E-10 88.7 24.0 147 368-537 30-177 (906)
123 COG5010 TadD Flp pilus assembl 98.5 4E-05 8.7E-10 73.1 20.6 159 373-535 70-228 (257)
124 PRK10370 formate-dependent nit 98.4 3.1E-05 6.7E-10 74.3 20.2 119 347-468 52-173 (198)
125 KOG3081 Vesicle coat complex C 98.4 0.00022 4.7E-09 68.0 24.9 250 201-468 16-271 (299)
126 PRK14720 transcript cleavage f 98.4 9.6E-05 2.1E-09 84.7 27.0 171 190-398 28-198 (906)
127 COG5010 TadD Flp pilus assembl 98.4 2.3E-05 5E-10 74.7 18.4 160 197-361 70-229 (257)
128 PRK15363 pathogenicity island 98.4 1.2E-05 2.6E-10 71.4 14.5 96 647-743 37-133 (157)
129 KOG1914 mRNA cleavage and poly 98.4 0.0051 1.1E-07 64.7 39.3 432 189-672 16-499 (656)
130 PRK15179 Vi polysaccharide bio 98.4 0.00011 2.3E-09 83.7 25.4 136 189-328 82-217 (694)
131 PRK15179 Vi polysaccharide bio 98.4 3.7E-05 8E-10 87.4 21.7 159 141-306 71-229 (694)
132 PRK15359 type III secretion sy 98.3 5E-05 1.1E-09 68.8 17.1 88 377-466 32-119 (144)
133 TIGR02552 LcrH_SycD type III s 98.3 9E-06 1.9E-10 73.3 12.2 110 632-744 5-116 (135)
134 COG4783 Putative Zn-dependent 98.3 0.00076 1.6E-08 70.2 27.0 140 378-538 315-454 (484)
135 KOG3081 Vesicle coat complex C 98.2 0.0015 3.2E-08 62.6 25.4 171 321-502 95-270 (299)
136 COG4783 Putative Zn-dependent 98.2 0.00044 9.5E-09 71.9 22.6 155 335-512 307-462 (484)
137 KOG3060 Uncharacterized conser 98.2 0.0029 6.3E-08 60.1 25.8 186 279-468 27-220 (289)
138 TIGR02552 LcrH_SycD type III s 98.1 9.9E-05 2.1E-09 66.4 15.4 97 439-537 17-113 (135)
139 KOG3060 Uncharacterized conser 98.1 0.0023 5E-08 60.8 23.1 190 169-363 25-220 (289)
140 KOG0550 Molecular chaperone (D 98.1 0.00017 3.7E-09 72.8 16.6 289 377-709 57-352 (486)
141 KOG0553 TPR repeat-containing 98.0 4.4E-05 9.6E-10 74.2 11.0 106 622-730 93-200 (304)
142 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00035 7.7E-09 73.5 16.1 119 341-465 176-294 (395)
143 PF09976 TPR_21: Tetratricopep 97.9 0.00069 1.5E-08 61.6 16.1 116 417-535 24-144 (145)
144 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00037 8E-09 60.9 13.8 103 156-258 2-106 (119)
145 PF09976 TPR_21: Tetratricopep 97.8 0.00042 9.1E-09 63.0 13.8 118 169-289 24-143 (145)
146 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00061 1.3E-08 71.7 16.3 125 407-537 172-296 (395)
147 KOG0550 Molecular chaperone (D 97.8 0.001 2.2E-08 67.5 16.6 292 304-674 54-350 (486)
148 PLN03088 SGT1, suppressor of 97.8 0.00023 4.9E-09 75.4 13.1 93 651-744 8-101 (356)
149 TIGR00756 PPR pentatricopeptid 97.8 3.8E-05 8.2E-10 50.1 4.5 33 511-543 2-34 (35)
150 PRK10866 outer membrane biogen 97.8 0.0063 1.4E-07 60.4 22.1 69 156-224 32-100 (243)
151 PF14938 SNAP: Soluble NSF att 97.7 0.0033 7.3E-08 64.4 20.1 140 157-328 36-184 (282)
152 PF13414 TPR_11: TPR repeat; P 97.7 0.0001 2.2E-09 57.2 6.8 50 691-741 16-66 (69)
153 cd00189 TPR Tetratricopeptide 97.7 0.00032 7E-09 58.0 10.0 94 647-741 2-96 (100)
154 TIGR00756 PPR pentatricopeptid 97.7 6.5E-05 1.4E-09 49.0 4.3 33 371-403 2-34 (35)
155 PF13812 PPR_3: Pentatricopept 97.7 6.6E-05 1.4E-09 48.6 4.1 33 510-542 2-34 (34)
156 PLN03088 SGT1, suppressor of 97.6 0.001 2.2E-08 70.5 14.7 103 162-270 8-110 (356)
157 KOG1130 Predicted G-alpha GTPa 97.6 0.0028 6.1E-08 64.1 16.6 128 614-741 199-343 (639)
158 PF12688 TPR_5: Tetratrico pep 97.6 0.0022 4.7E-08 55.3 14.0 111 160-274 5-117 (120)
159 PRK02603 photosystem I assembl 97.6 0.0026 5.6E-08 59.9 15.9 91 158-249 37-127 (172)
160 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.12 2.5E-06 53.5 33.1 419 145-576 31-534 (660)
161 PF13812 PPR_3: Pentatricopept 97.6 9.3E-05 2E-09 47.9 3.9 33 229-261 2-34 (34)
162 PF14938 SNAP: Soluble NSF att 97.6 0.0077 1.7E-07 61.7 19.9 151 517-708 102-267 (282)
163 KOG1130 Predicted G-alpha GTPa 97.6 0.0012 2.6E-08 66.6 13.0 29 644-672 314-342 (639)
164 KOG0553 TPR repeat-containing 97.6 0.00082 1.8E-08 65.6 11.5 102 163-270 88-189 (304)
165 cd00189 TPR Tetratricopeptide 97.6 0.0014 2.9E-08 54.1 11.9 21 410-430 40-60 (100)
166 PF12895 Apc3: Anaphase-promot 97.5 0.00018 4E-09 58.3 5.9 48 690-739 37-84 (84)
167 PF13525 YfiO: Outer membrane 97.5 0.0088 1.9E-07 57.9 18.7 68 156-223 5-72 (203)
168 PF12895 Apc3: Anaphase-promot 97.5 0.0003 6.5E-09 57.0 7.0 82 169-253 2-83 (84)
169 PRK02603 photosystem I assembl 97.5 0.0057 1.2E-07 57.5 16.6 89 474-564 35-126 (172)
170 PF10037 MRP-S27: Mitochondria 97.5 0.0015 3.4E-08 69.0 13.6 122 401-522 63-186 (429)
171 PF10037 MRP-S27: Mitochondria 97.5 0.0016 3.4E-08 69.0 13.5 124 434-557 61-186 (429)
172 COG4235 Cytochrome c biogenesi 97.5 0.0016 3.4E-08 64.2 12.6 118 629-749 141-263 (287)
173 KOG2041 WD40 repeat protein [G 97.5 0.13 2.9E-06 55.9 27.5 42 513-554 1025-1067(1189)
174 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.003 6.5E-08 55.1 13.6 14 451-464 88-101 (119)
175 PRK10153 DNA-binding transcrip 97.5 0.012 2.6E-07 65.2 20.4 63 228-293 420-482 (517)
176 PF05843 Suf: Suppressor of fo 97.4 0.002 4.3E-08 65.7 13.4 142 406-552 3-148 (280)
177 KOG2041 WD40 repeat protein [G 97.4 0.27 5.9E-06 53.6 29.2 21 481-501 930-950 (1189)
178 PRK10866 outer membrane biogen 97.4 0.055 1.2E-06 53.7 23.1 56 375-430 181-238 (243)
179 PRK15363 pathogenicity island 97.4 0.0026 5.5E-08 56.8 12.1 94 159-256 38-131 (157)
180 PF01535 PPR: PPR repeat; Int 97.4 0.00016 3.4E-09 45.6 3.1 29 511-539 2-30 (31)
181 CHL00033 ycf3 photosystem I as 97.4 0.0037 8E-08 58.5 13.4 96 156-252 35-137 (168)
182 PF08579 RPM2: Mitochondrial r 97.4 0.0047 1E-07 51.1 11.8 88 512-657 28-116 (120)
183 PF05843 Suf: Suppressor of fo 97.3 0.003 6.5E-08 64.5 13.3 129 265-398 3-136 (280)
184 PF06239 ECSIT: Evolutionarily 97.3 0.0048 1E-07 57.8 13.0 49 279-327 118-167 (228)
185 PF01535 PPR: PPR repeat; Int 97.3 0.00023 5.1E-09 44.8 3.3 26 372-397 3-28 (31)
186 PF13432 TPR_16: Tetratricopep 97.3 0.00058 1.3E-08 52.1 6.1 53 690-743 9-61 (65)
187 PRK15331 chaperone protein Sic 97.3 0.004 8.7E-08 55.9 11.9 94 648-742 40-134 (165)
188 PF08579 RPM2: Mitochondrial r 97.3 0.0036 7.9E-08 51.7 10.5 77 480-556 31-116 (120)
189 PF13432 TPR_16: Tetratricopep 97.3 0.0007 1.5E-08 51.7 6.1 60 651-710 3-63 (65)
190 PF06239 ECSIT: Evolutionarily 97.3 0.0053 1.1E-07 57.5 12.7 51 401-451 44-99 (228)
191 PRK11906 transcriptional regul 97.2 0.0064 1.4E-07 63.9 14.1 134 625-759 273-420 (458)
192 CHL00033 ycf3 photosystem I as 97.2 0.0063 1.4E-07 56.9 13.1 94 440-534 36-138 (168)
193 PRK10153 DNA-binding transcrip 97.2 0.019 4.2E-07 63.6 18.7 63 473-537 419-481 (517)
194 COG4235 Cytochrome c biogenesi 97.2 0.0063 1.4E-07 60.0 13.0 100 153-256 153-255 (287)
195 PF14559 TPR_19: Tetratricopep 97.2 0.0011 2.5E-08 51.0 6.4 55 690-745 3-57 (68)
196 KOG2796 Uncharacterized conser 97.2 0.14 3.1E-06 49.2 20.9 131 266-398 180-315 (366)
197 KOG2796 Uncharacterized conser 97.1 0.071 1.5E-06 51.1 18.1 145 406-553 179-328 (366)
198 COG4700 Uncharacterized protei 97.0 0.2 4.2E-06 45.7 19.2 125 402-530 87-214 (251)
199 PF13414 TPR_11: TPR repeat; P 97.0 0.0034 7.3E-08 48.5 7.5 64 156-222 3-67 (69)
200 PF13424 TPR_12: Tetratricopep 97.0 0.0029 6.2E-08 50.4 7.2 69 646-741 6-74 (78)
201 PF14559 TPR_19: Tetratricopep 97.0 0.0033 7.2E-08 48.4 7.2 52 168-222 3-54 (68)
202 COG4105 ComL DNA uptake lipopr 97.0 0.25 5.4E-06 48.0 21.0 84 156-239 34-117 (254)
203 PF13431 TPR_17: Tetratricopep 96.9 0.00067 1.4E-08 43.5 2.5 34 700-734 1-34 (34)
204 PF04840 Vps16_C: Vps16, C-ter 96.9 0.62 1.3E-05 48.2 29.5 64 159-238 3-66 (319)
205 PF13525 YfiO: Outer membrane 96.9 0.071 1.5E-06 51.5 17.2 64 195-258 7-72 (203)
206 PF12688 TPR_5: Tetratrico pep 96.9 0.066 1.4E-06 46.2 14.7 53 379-431 11-65 (120)
207 KOG1538 Uncharacterized conser 96.8 0.083 1.8E-06 56.9 18.0 56 438-502 746-801 (1081)
208 PF07079 DUF1347: Protein of u 96.8 0.82 1.8E-05 47.8 42.5 349 166-538 16-409 (549)
209 KOG1258 mRNA processing protei 96.8 1 2.3E-05 48.9 36.0 364 152-564 41-420 (577)
210 PRK10803 tol-pal system protei 96.8 0.024 5.1E-07 56.8 13.2 96 162-257 149-246 (263)
211 COG3898 Uncharacterized membra 96.8 0.81 1.8E-05 46.8 32.3 283 279-577 99-396 (531)
212 COG4700 Uncharacterized protei 96.7 0.4 8.7E-06 43.7 18.7 128 296-427 86-216 (251)
213 KOG1585 Protein required for f 96.7 0.32 6.9E-06 46.4 18.7 205 157-391 32-249 (308)
214 PF07079 DUF1347: Protein of u 96.7 1.1 2.3E-05 47.0 40.1 48 690-739 474-521 (549)
215 KOG2280 Vacuolar assembly/sort 96.6 1.4 3.1E-05 49.0 25.3 109 440-567 685-793 (829)
216 PRK10803 tol-pal system protei 96.5 0.04 8.6E-07 55.2 12.9 91 485-577 154-250 (263)
217 PF04840 Vps16_C: Vps16, C-ter 96.5 1.4 2.9E-05 45.7 29.0 109 406-534 179-287 (319)
218 COG3898 Uncharacterized membra 96.5 1.3 2.8E-05 45.4 31.0 119 412-538 271-392 (531)
219 COG0457 NrfG FOG: TPR repeat [ 96.4 1.1 2.4E-05 43.8 30.0 200 371-573 61-265 (291)
220 COG5107 RNA14 Pre-mRNA 3'-end 96.3 1.1 2.4E-05 46.7 21.3 129 300-432 398-530 (660)
221 PF13424 TPR_12: Tetratricopep 96.3 0.014 3E-07 46.3 6.7 65 157-221 6-74 (78)
222 KOG1538 Uncharacterized conser 96.2 0.39 8.4E-06 52.0 18.3 100 368-502 746-845 (1081)
223 PF13371 TPR_9: Tetratricopept 96.2 0.032 7E-07 43.5 8.1 56 482-538 3-58 (73)
224 KOG1941 Acetylcholine receptor 96.1 0.35 7.7E-06 48.7 16.4 95 646-740 163-273 (518)
225 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.016 3.4E-07 60.9 7.4 99 641-743 70-175 (453)
226 KOG1550 Extracellular protein 96.0 3.7 8E-05 46.5 27.9 128 406-539 290-427 (552)
227 PF13371 TPR_9: Tetratricopept 96.0 0.047 1E-06 42.5 8.1 53 414-467 5-57 (73)
228 KOG0543 FKBP-type peptidyl-pro 96.0 0.14 3.1E-06 52.8 13.2 94 646-740 258-353 (397)
229 KOG1258 mRNA processing protei 95.8 3.7 8E-05 44.9 38.1 377 158-558 81-489 (577)
230 PF13281 DUF4071: Domain of un 95.7 1.7 3.8E-05 45.4 20.3 172 339-538 146-334 (374)
231 KOG3941 Intermediate in Toll s 95.7 0.14 2.9E-06 49.8 11.2 104 507-660 65-173 (406)
232 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.11 2.3E-06 54.9 11.5 70 153-222 72-141 (453)
233 PF03704 BTAD: Bacterial trans 95.7 0.067 1.4E-06 48.6 9.2 71 476-547 64-139 (146)
234 PF04184 ST7: ST7 protein; In 95.7 0.65 1.4E-05 49.4 16.9 103 474-577 259-379 (539)
235 PRK11906 transcriptional regul 95.7 0.38 8.3E-06 51.0 15.4 112 624-738 318-432 (458)
236 KOG4555 TPR repeat-containing 95.7 0.32 6.9E-06 41.5 11.8 93 163-258 50-145 (175)
237 KOG2114 Vacuolar assembly/sort 95.6 2.4 5.2E-05 48.0 21.8 182 158-361 336-517 (933)
238 PF13512 TPR_18: Tetratricopep 95.6 0.19 4.2E-06 44.2 11.1 85 155-239 9-93 (142)
239 COG4105 ComL DNA uptake lipopr 95.6 2.4 5.2E-05 41.4 20.7 80 194-274 36-117 (254)
240 COG3118 Thioredoxin domain-con 95.6 1.2 2.7E-05 44.1 17.3 124 162-292 140-264 (304)
241 KOG1585 Protein required for f 95.6 1.2 2.6E-05 42.7 16.5 87 441-537 33-119 (308)
242 PF13281 DUF4071: Domain of un 95.5 2.7 5.9E-05 44.0 20.8 30 473-502 304-333 (374)
243 COG4785 NlpI Lipoprotein NlpI, 95.4 1.1 2.5E-05 42.0 15.6 98 633-736 88-189 (297)
244 PF03704 BTAD: Bacterial trans 95.4 0.96 2.1E-05 40.9 15.7 70 230-301 64-138 (146)
245 PF06552 TOM20_plant: Plant sp 95.4 0.098 2.1E-06 47.6 8.6 80 661-741 7-101 (186)
246 PF10300 DUF3808: Protein of u 95.3 0.91 2E-05 50.1 17.9 116 279-397 248-375 (468)
247 PRK15331 chaperone protein Sic 95.3 0.16 3.4E-06 45.9 9.6 86 380-467 48-133 (165)
248 KOG0543 FKBP-type peptidyl-pro 95.2 0.26 5.7E-06 50.9 12.1 96 370-467 258-354 (397)
249 KOG1941 Acetylcholine receptor 95.2 4.3 9.3E-05 41.4 20.5 169 405-573 44-235 (518)
250 COG1729 Uncharacterized protei 95.2 0.25 5.3E-06 48.5 11.2 91 166-256 151-243 (262)
251 COG0457 NrfG FOG: TPR repeat [ 95.1 3.4 7.5E-05 40.2 33.2 219 280-502 39-264 (291)
252 KOG4555 TPR repeat-containing 95.1 0.16 3.5E-06 43.2 8.3 91 654-744 52-146 (175)
253 KOG2280 Vacuolar assembly/sort 95.0 7.8 0.00017 43.5 29.7 322 223-574 427-774 (829)
254 COG3118 Thioredoxin domain-con 95.0 3.3 7.2E-05 41.2 18.4 143 308-453 143-286 (304)
255 PF12921 ATP13: Mitochondrial 94.9 0.47 1E-05 41.4 11.2 102 438-559 1-103 (126)
256 smart00299 CLH Clathrin heavy 94.8 1.4 2.9E-05 39.6 14.8 42 198-240 12-53 (140)
257 KOG1923 Rac1 GTPase effector F 94.8 0.11 2.3E-06 57.4 8.4 8 649-656 720-727 (830)
258 PF08631 SPO22: Meiosis protei 94.7 5.8 0.00013 40.5 26.5 125 167-293 4-150 (278)
259 KOG1920 IkappaB kinase complex 94.6 13 0.00028 44.3 26.3 271 211-536 775-1053(1265)
260 PF10300 DUF3808: Protein of u 94.6 1.6 3.5E-05 48.1 17.2 178 175-362 176-375 (468)
261 PF04053 Coatomer_WDAD: Coatom 94.5 1 2.3E-05 48.8 15.2 74 415-503 329-402 (443)
262 PF13428 TPR_14: Tetratricopep 94.3 0.11 2.5E-06 35.5 4.9 38 647-684 3-40 (44)
263 PF04184 ST7: ST7 protein; In 94.3 2.5 5.4E-05 45.1 16.6 151 161-328 173-324 (539)
264 KOG3941 Intermediate in Toll s 94.3 0.36 7.9E-06 47.0 9.7 70 244-313 88-172 (406)
265 COG1747 Uncharacterized N-term 94.3 9.2 0.0002 41.0 23.6 204 473-709 65-290 (711)
266 KOG1586 Protein required for f 94.2 5.4 0.00012 38.2 19.9 99 625-723 129-241 (288)
267 KOG2114 Vacuolar assembly/sort 94.2 13 0.00028 42.5 25.5 179 195-395 336-516 (933)
268 PF04053 Coatomer_WDAD: Coatom 94.2 1.9 4.2E-05 46.8 16.4 130 301-463 297-426 (443)
269 COG1729 Uncharacterized protei 94.2 0.48 1E-05 46.5 10.5 97 125-222 145-244 (262)
270 KOG1550 Extracellular protein 94.0 13 0.00029 42.1 27.3 179 209-399 228-427 (552)
271 PF13428 TPR_14: Tetratricopep 93.9 0.14 3.1E-06 35.1 4.8 27 159-185 4-30 (44)
272 KOG4234 TPR repeat-containing 93.8 1.2 2.5E-05 41.3 11.5 93 651-744 101-199 (271)
273 PF12921 ATP13: Mitochondrial 93.8 0.99 2.2E-05 39.4 10.9 47 401-447 49-96 (126)
274 PF08631 SPO22: Meiosis protei 93.8 8.9 0.00019 39.1 26.0 102 405-509 85-192 (278)
275 smart00299 CLH Clathrin heavy 93.7 4.2 9.2E-05 36.4 15.5 23 234-256 13-35 (140)
276 PF00515 TPR_1: Tetratricopept 93.6 0.15 3.2E-06 32.6 4.1 32 646-677 2-33 (34)
277 KOG2396 HAT (Half-A-TPR) repea 93.5 13 0.00027 40.0 36.5 67 190-257 102-169 (568)
278 KOG2610 Uncharacterized conser 93.2 2.6 5.7E-05 42.3 13.7 154 203-360 113-273 (491)
279 PF13512 TPR_18: Tetratricopep 93.1 2.3 5E-05 37.6 12.0 77 445-521 16-94 (142)
280 PF10345 Cohesin_load: Cohesin 93.1 20 0.00044 41.3 43.7 185 174-360 39-251 (608)
281 KOG2610 Uncharacterized conser 93.0 8.3 0.00018 38.9 16.7 114 279-394 118-234 (491)
282 PF13170 DUF4003: Protein of u 92.9 9.2 0.0002 39.2 17.9 128 246-375 80-223 (297)
283 PF09205 DUF1955: Domain of un 92.6 6.2 0.00013 34.1 15.4 59 410-469 92-150 (161)
284 PF13176 TPR_7: Tetratricopept 92.6 0.21 4.6E-06 32.4 3.7 25 716-740 2-26 (36)
285 PF13170 DUF4003: Protein of u 92.4 14 0.00031 37.8 20.7 25 491-515 199-223 (297)
286 PF07719 TPR_2: Tetratricopept 92.4 0.27 5.8E-06 31.2 4.1 31 647-677 3-33 (34)
287 COG4649 Uncharacterized protei 92.4 8.5 0.00019 35.0 14.4 125 203-328 68-196 (221)
288 COG4649 Uncharacterized protei 92.3 7.9 0.00017 35.3 14.1 138 158-298 61-201 (221)
289 PF09205 DUF1955: Domain of un 92.3 6.9 0.00015 33.8 13.7 62 302-364 89-150 (161)
290 KOG1464 COP9 signalosome, subu 92.2 12 0.00026 36.5 21.8 66 510-575 192-262 (440)
291 COG3629 DnrI DNA-binding trans 92.2 1.5 3.3E-05 43.8 10.9 79 475-554 154-237 (280)
292 KOG1464 COP9 signalosome, subu 92.2 12 0.00027 36.5 17.9 209 349-558 42-286 (440)
293 KOG2063 Vacuolar assembly/sort 92.0 18 0.00038 42.6 20.4 63 159-221 310-374 (877)
294 PF13176 TPR_7: Tetratricopept 91.7 0.27 5.9E-06 31.9 3.5 26 647-672 1-26 (36)
295 PF07719 TPR_2: Tetratricopept 91.3 0.38 8.3E-06 30.5 3.9 30 714-743 2-31 (34)
296 PF09613 HrpB1_HrpK: Bacterial 91.3 9 0.0002 34.7 13.6 96 200-299 17-112 (160)
297 KOG0307 Vesicle coat complex C 91.1 23 0.00051 41.8 20.0 18 203-220 1007-1024(1049)
298 COG2976 Uncharacterized protei 91.0 2.6 5.6E-05 39.2 10.1 95 162-258 95-189 (207)
299 PRK11619 lytic murein transgly 90.8 36 0.00079 39.3 36.8 389 140-564 83-496 (644)
300 PF04910 Tcf25: Transcriptiona 90.8 25 0.00054 37.3 21.0 41 144-184 28-68 (360)
301 PF06552 TOM20_plant: Plant sp 90.5 1.4 3.1E-05 40.3 8.0 53 659-711 49-113 (186)
302 COG4785 NlpI Lipoprotein NlpI, 90.5 16 0.00035 34.6 19.1 86 205-293 77-162 (297)
303 KOG4648 Uncharacterized conser 90.3 1.1 2.5E-05 44.8 7.7 107 621-735 108-217 (536)
304 KOG0890 Protein kinase of the 90.2 71 0.0015 41.6 26.1 324 161-504 1388-1732(2382)
305 PRK09687 putative lyase; Provi 90.2 23 0.00051 36.0 27.6 233 298-555 36-278 (280)
306 COG3629 DnrI DNA-binding trans 90.2 3.4 7.3E-05 41.4 11.0 56 409-465 158-213 (280)
307 PF07035 Mic1: Colon cancer-as 89.7 16 0.00035 33.5 15.8 101 249-360 15-115 (167)
308 KOG2066 Vacuolar assembly/sort 89.3 45 0.00097 38.1 32.0 26 230-255 394-419 (846)
309 PF10345 Cohesin_load: Cohesin 88.8 51 0.0011 38.0 40.1 406 159-567 62-600 (608)
310 KOG4234 TPR repeat-containing 88.8 4.5 9.8E-05 37.6 9.7 87 623-711 108-201 (271)
311 PF00515 TPR_1: Tetratricopept 88.7 0.95 2.1E-05 28.7 4.2 29 715-743 3-31 (34)
312 PF13431 TPR_17: Tetratricopep 88.3 0.57 1.2E-05 29.9 2.8 22 191-212 11-32 (34)
313 PF13374 TPR_10: Tetratricopep 88.2 0.87 1.9E-05 30.4 3.9 29 714-742 3-31 (42)
314 PF10602 RPN7: 26S proteasome 88.1 6.7 0.00014 36.8 11.0 58 372-429 39-98 (177)
315 PF09613 HrpB1_HrpK: Bacterial 88.1 4.8 0.0001 36.4 9.4 83 653-736 18-104 (160)
316 KOG4849 mRNA cleavage factor I 88.0 8.2 0.00018 38.7 11.6 17 168-184 385-401 (498)
317 KOG4570 Uncharacterized conser 88.0 5.7 0.00012 39.7 10.5 101 223-328 59-164 (418)
318 KOG0276 Vesicle coat complex C 87.9 9.9 0.00021 41.6 13.0 150 346-535 598-747 (794)
319 PF13181 TPR_8: Tetratricopept 87.5 1.1 2.3E-05 28.4 3.8 29 715-743 3-31 (34)
320 PF10602 RPN7: 26S proteasome 87.5 5.5 0.00012 37.3 10.1 63 158-220 38-100 (177)
321 TIGR02561 HrpB1_HrpK type III 87.4 17 0.00037 32.4 12.1 92 205-300 22-113 (153)
322 PF13181 TPR_8: Tetratricopept 87.3 0.83 1.8E-05 28.9 3.2 30 647-676 3-32 (34)
323 KOG2471 TPR repeat-containing 87.0 17 0.00037 38.8 13.9 106 448-555 249-380 (696)
324 KOG2066 Vacuolar assembly/sort 86.8 64 0.0014 36.9 28.0 171 163-362 363-533 (846)
325 KOG4648 Uncharacterized conser 86.5 1.5 3.2E-05 44.1 5.7 93 651-744 103-196 (536)
326 KOG1920 IkappaB kinase complex 86.2 86 0.0019 37.8 27.4 133 408-568 912-1050(1265)
327 COG3947 Response regulator con 86.1 39 0.00084 33.8 15.9 57 479-536 284-340 (361)
328 KOG4570 Uncharacterized conser 86.1 11 0.00023 37.9 11.2 101 434-538 59-164 (418)
329 KOG0276 Vesicle coat complex C 86.0 15 0.00032 40.4 13.0 99 240-360 649-747 (794)
330 COG1747 Uncharacterized N-term 85.5 59 0.0013 35.3 24.9 179 262-449 65-249 (711)
331 COG3947 Response regulator con 85.4 34 0.00074 34.2 14.1 55 445-500 285-339 (361)
332 PRK09687 putative lyase; Provi 85.3 46 0.001 33.9 27.8 15 228-242 68-82 (280)
333 PF13374 TPR_10: Tetratricopep 84.3 1.3 2.9E-05 29.5 3.3 28 646-673 3-30 (42)
334 KOG2391 Vacuolar sorting prote 84.0 7.4 0.00016 39.2 9.2 49 227-276 298-346 (365)
335 PF00637 Clathrin: Region in C 83.7 0.035 7.5E-07 50.3 -6.5 54 199-252 13-66 (143)
336 PF04097 Nic96: Nup93/Nic96; 83.5 92 0.002 35.9 21.8 65 229-295 113-183 (613)
337 PF07721 TPR_4: Tetratricopept 83.5 1.7 3.6E-05 25.7 3.0 23 715-737 3-25 (26)
338 PF07035 Mic1: Colon cancer-as 83.5 37 0.0008 31.3 14.9 33 285-317 15-47 (167)
339 KOG0917 Uncharacterized conser 83.2 9.8 0.00021 36.9 9.3 17 63-79 251-267 (338)
340 COG0790 FOG: TPR repeat, SEL1 83.2 58 0.0013 33.4 23.1 152 167-329 52-221 (292)
341 TIGR02561 HrpB1_HrpK type III 83.1 10 0.00022 33.7 8.7 72 657-729 22-94 (153)
342 COG2976 Uncharacterized protei 82.4 44 0.00095 31.4 15.0 92 446-539 96-189 (207)
343 PF11207 DUF2989: Protein of u 81.6 42 0.0009 31.8 12.7 73 281-354 123-198 (203)
344 COG2909 MalT ATP-dependent tra 80.8 1.2E+02 0.0027 35.4 29.6 89 239-328 426-526 (894)
345 PF13174 TPR_6: Tetratricopept 79.2 3.2 6.8E-05 25.8 3.4 27 716-742 3-29 (33)
346 COG5159 RPN6 26S proteasome re 79.0 72 0.0016 31.8 15.8 22 408-429 129-150 (421)
347 COG0790 FOG: TPR repeat, SEL1 77.6 88 0.0019 32.0 25.5 85 456-547 172-275 (292)
348 COG2909 MalT ATP-dependent tra 76.9 1.6E+02 0.0035 34.6 27.5 315 245-566 298-681 (894)
349 PF11207 DUF2989: Protein of u 76.2 29 0.00063 32.8 9.9 73 490-563 122-197 (203)
350 KOG2070 Guanine nucleotide exc 75.8 25 0.00054 37.4 10.3 7 162-168 562-568 (661)
351 KOG4642 Chaperone-dependent E3 74.7 9.3 0.0002 36.8 6.4 78 625-704 25-104 (284)
352 PF13174 TPR_6: Tetratricopept 74.7 3.8 8.3E-05 25.4 2.9 26 650-675 5-30 (33)
353 cd00923 Cyt_c_Oxidase_Va Cytoc 74.0 22 0.00048 28.9 7.3 62 490-552 23-84 (103)
354 KOG1308 Hsp70-interacting prot 73.9 3.5 7.6E-05 41.8 3.6 88 657-745 126-214 (377)
355 PF08424 NRDE-2: NRDE-2, neces 73.8 1.2E+02 0.0026 31.7 19.5 80 172-255 47-129 (321)
356 PF14561 TPR_20: Tetratricopep 73.6 33 0.00072 27.8 8.6 68 142-210 8-75 (90)
357 PF10579 Rapsyn_N: Rapsyn N-te 73.5 8.5 0.00018 29.9 4.8 48 168-215 18-65 (80)
358 PF07575 Nucleopor_Nup85: Nup8 73.4 91 0.002 35.6 15.4 135 403-554 404-540 (566)
359 PF04097 Nic96: Nup93/Nic96; 73.2 1.8E+02 0.004 33.5 24.6 59 198-257 116-181 (613)
360 KOG0307 Vesicle coat complex C 72.6 2.2E+02 0.0048 34.2 18.6 41 215-255 984-1024(1049)
361 KOG0128 RNA-binding protein SA 72.5 1.9E+02 0.0042 33.6 33.9 79 486-565 474-555 (881)
362 KOG0162 Myosin class I heavy c 72.1 8.4 0.00018 42.9 6.2 63 4-66 987-1052(1106)
363 PF02259 FAT: FAT domain; Int 72.0 1.4E+02 0.0029 31.5 28.5 65 473-537 145-212 (352)
364 PF02259 FAT: FAT domain; Int 71.0 1.4E+02 0.0031 31.3 25.9 53 235-292 5-57 (352)
365 cd00923 Cyt_c_Oxidase_Va Cytoc 70.9 29 0.00064 28.3 7.3 43 424-466 27-69 (103)
366 smart00028 TPR Tetratricopepti 70.7 7.1 0.00015 23.3 3.5 30 647-676 3-32 (34)
367 smart00028 TPR Tetratricopepti 70.6 6.1 0.00013 23.6 3.2 28 715-742 3-30 (34)
368 COG4455 ImpE Protein of avirul 70.4 29 0.00062 33.1 8.3 58 479-537 6-63 (273)
369 COG5159 RPN6 26S proteasome re 69.8 1.2E+02 0.0027 30.2 21.9 32 340-371 9-40 (421)
370 PF09986 DUF2225: Uncharacteri 69.7 39 0.00085 32.8 9.7 93 166-258 87-195 (214)
371 COG4455 ImpE Protein of avirul 68.3 22 0.00047 33.9 7.1 75 162-239 7-83 (273)
372 KOG2063 Vacuolar assembly/sort 67.9 2.7E+02 0.0058 33.3 19.2 26 159-184 507-532 (877)
373 PF10579 Rapsyn_N: Rapsyn N-te 67.9 22 0.00049 27.7 5.9 44 625-668 21-66 (80)
374 PF08424 NRDE-2: NRDE-2, neces 67.6 1.6E+02 0.0035 30.7 17.8 117 456-574 48-184 (321)
375 PF00637 Clathrin: Region in C 67.6 1.5 3.3E-05 39.4 -0.4 53 306-358 14-66 (143)
376 KOG3364 Membrane protein invol 67.4 39 0.00084 29.6 7.9 49 693-741 50-99 (149)
377 PF02284 COX5A: Cytochrome c o 66.9 22 0.00048 29.3 6.0 60 492-552 28-87 (108)
378 PRK11619 lytic murein transgly 66.7 2.5E+02 0.0055 32.6 34.0 381 141-547 114-514 (644)
379 PF07163 Pex26: Pex26 protein; 66.5 44 0.00096 33.3 9.1 88 162-251 89-181 (309)
380 KOG0403 Neoplastic transformat 66.1 1.9E+02 0.0041 31.0 19.2 301 232-556 218-586 (645)
381 PF07721 TPR_4: Tetratricopept 65.8 9.5 0.00021 22.4 3.0 19 198-216 6-24 (26)
382 PF02284 COX5A: Cytochrome c o 65.7 74 0.0016 26.4 8.7 45 423-467 29-73 (108)
383 KOG2297 Predicted translation 65.2 1.6E+02 0.0035 29.8 18.0 39 372-418 199-237 (412)
384 COG5187 RPN7 26S proteasome re 64.6 1.6E+02 0.0035 29.5 13.9 67 369-435 115-186 (412)
385 PF04910 Tcf25: Transcriptiona 64.5 2E+02 0.0043 30.6 19.9 157 401-576 37-225 (360)
386 PF14853 Fis1_TPR_C: Fis1 C-te 63.7 13 0.00027 26.7 3.7 32 650-681 6-37 (53)
387 PF13929 mRNA_stabil: mRNA sta 63.7 1.7E+02 0.0037 29.6 16.4 114 350-463 144-262 (292)
388 KOG2471 TPR repeat-containing 63.0 1.6E+02 0.0034 32.0 12.8 107 413-521 249-381 (696)
389 KOG1586 Protein required for f 63.0 1.5E+02 0.0033 28.8 22.4 19 202-220 23-41 (288)
390 TIGR03504 FimV_Cterm FimV C-te 62.3 17 0.00038 24.8 4.0 23 515-537 5-27 (44)
391 PF13929 mRNA_stabil: mRNA sta 62.2 1.8E+02 0.004 29.4 16.8 61 297-357 200-261 (292)
392 KOG0376 Serine-threonine phosp 62.1 9.5 0.00021 40.7 4.1 87 623-711 17-105 (476)
393 KOG4279 Serine/threonine prote 61.9 2.4E+02 0.0053 32.4 14.5 44 654-709 353-397 (1226)
394 KOG4642 Chaperone-dependent E3 61.3 1.5E+02 0.0033 28.9 11.3 84 166-254 20-104 (284)
395 PF00244 14-3-3: 14-3-3 protei 61.2 1.7E+02 0.0038 28.8 16.0 76 661-744 111-200 (236)
396 PF09986 DUF2225: Uncharacteri 61.0 45 0.00098 32.3 8.3 49 694-742 141-194 (214)
397 KOG0376 Serine-threonine phosp 60.4 22 0.00048 38.1 6.4 106 162-273 10-115 (476)
398 TIGR02508 type_III_yscG type I 59.5 1E+02 0.0022 25.5 9.0 53 341-399 46-98 (115)
399 KOG3824 Huntingtin interacting 59.4 32 0.0007 34.4 6.8 57 656-712 127-184 (472)
400 KOG0687 26S proteasome regulat 58.3 2.3E+02 0.0049 29.2 13.6 93 336-430 106-207 (393)
401 KOG4507 Uncharacterized conser 58.2 60 0.0013 35.8 9.1 86 169-257 620-705 (886)
402 PHA02875 ankyrin repeat protei 58.0 2.2E+02 0.0047 30.9 14.3 14 496-509 217-230 (413)
403 PF04190 DUF410: Protein of un 58.0 2.1E+02 0.0046 28.7 16.1 159 345-537 1-169 (260)
404 TIGR03504 FimV_Cterm FimV C-te 57.0 24 0.00052 24.1 4.0 21 446-466 6-26 (44)
405 PF07575 Nucleopor_Nup85: Nup8 55.2 3.7E+02 0.008 30.7 16.4 29 624-652 509-537 (566)
406 COG5178 PRP8 U5 snRNP spliceos 54.9 8.2 0.00018 45.2 2.4 6 700-705 1137-1142(2365)
407 KOG2908 26S proteasome regulat 54.8 2E+02 0.0042 29.8 11.5 81 195-275 77-168 (380)
408 KOG3364 Membrane protein invol 54.8 43 0.00093 29.3 6.0 22 690-711 83-104 (149)
409 KOG0890 Protein kinase of the 54.3 6.8E+02 0.015 33.5 35.6 150 339-498 1388-1542(2382)
410 KOG1308 Hsp70-interacting prot 54.2 9.6 0.00021 38.8 2.5 97 165-265 123-219 (377)
411 KOG4814 Uncharacterized conser 54.0 72 0.0016 35.6 9.0 87 168-255 366-455 (872)
412 PF14561 TPR_20: Tetratricopep 53.7 1.2E+02 0.0026 24.6 8.9 55 190-244 19-74 (90)
413 TIGR02508 type_III_yscG type I 53.1 1.3E+02 0.0028 24.9 8.5 52 482-539 47-98 (115)
414 KOG4507 Uncharacterized conser 52.9 92 0.002 34.4 9.4 151 296-450 568-721 (886)
415 PF07163 Pex26: Pex26 protein; 52.3 1.7E+02 0.0036 29.4 10.3 54 376-431 90-145 (309)
416 PLN00034 mitogen-activated pro 51.9 54 0.0012 34.7 8.1 6 1-6 1-6 (353)
417 PF12862 Apc5: Anaphase-promot 51.6 64 0.0014 26.3 6.7 55 167-221 9-69 (94)
418 PF12862 Apc5: Anaphase-promot 49.9 41 0.00088 27.5 5.2 28 716-743 44-71 (94)
419 PF03276 Gag_spuma: Spumavirus 49.5 92 0.002 34.0 8.8 11 242-252 376-386 (582)
420 KOG2908 26S proteasome regulat 49.3 2.1E+02 0.0046 29.5 10.7 89 231-320 78-178 (380)
421 PHA02875 ankyrin repeat protei 48.3 3.5E+02 0.0075 29.3 13.9 18 341-358 139-156 (413)
422 KOG3807 Predicted membrane pro 47.4 3.3E+02 0.0072 27.9 12.5 148 167-333 195-345 (556)
423 PF10366 Vps39_1: Vacuolar sor 46.9 93 0.002 26.3 7.0 26 372-397 42-67 (108)
424 KOG0905 Phosphoinositide 3-kin 46.2 1.3E+02 0.0028 36.4 9.9 23 760-782 1330-1352(1639)
425 PF08311 Mad3_BUB1_I: Mad3/BUB 45.9 58 0.0013 28.4 5.8 45 696-740 81-126 (126)
426 PRK15180 Vi polysaccharide bio 45.1 4.4E+02 0.0095 28.6 32.5 130 160-295 293-422 (831)
427 PF14689 SPOB_a: Sensor_kinase 45.1 57 0.0012 24.3 4.8 19 446-464 30-48 (62)
428 PRK13800 putative oxidoreducta 45.0 6.6E+02 0.014 30.7 29.9 248 296-572 632-880 (897)
429 PRK10941 hypothetical protein; 44.2 3E+02 0.0065 27.8 11.2 75 479-554 186-261 (269)
430 PHA02940 hypothetical protein; 44.0 3.2E+02 0.0069 26.7 12.3 69 648-724 145-215 (315)
431 COG4941 Predicted RNA polymera 43.9 3.7E+02 0.0079 27.9 11.4 118 624-742 270-394 (415)
432 smart00463 SMR Small MutS-rela 43.4 20 0.00043 28.3 2.4 39 753-796 3-41 (80)
433 KOG4521 Nuclear pore complex, 43.4 6.8E+02 0.015 30.7 14.9 83 301-386 985-1071(1480)
434 KOG0128 RNA-binding protein SA 43.3 6.1E+02 0.013 29.8 35.4 97 227-327 112-218 (881)
435 KOG0687 26S proteasome regulat 43.1 3.9E+02 0.0085 27.5 14.0 23 372-394 107-129 (393)
436 cd08819 CARD_MDA5_2 Caspase ac 42.6 1.6E+02 0.0035 23.7 7.0 16 311-326 48-63 (88)
437 KOG3824 Huntingtin interacting 42.6 49 0.0011 33.2 5.2 52 689-741 127-178 (472)
438 PF11848 DUF3368: Domain of un 42.5 94 0.002 21.6 5.3 34 519-552 12-45 (48)
439 KOG2034 Vacuolar sorting prote 42.2 6.5E+02 0.014 29.8 30.6 77 159-250 361-437 (911)
440 PF14689 SPOB_a: Sensor_kinase 41.2 60 0.0013 24.1 4.4 30 508-537 22-51 (62)
441 KOG0551 Hsp90 co-chaperone CNS 40.6 1E+02 0.0023 31.6 7.1 90 648-738 84-178 (390)
442 KOG4849 mRNA cleavage factor I 40.2 4.3E+02 0.0093 27.1 14.1 15 205-219 385-399 (498)
443 smart00386 HAT HAT (Half-A-TPR 40.2 56 0.0012 19.6 3.7 28 693-721 2-29 (33)
444 PF11846 DUF3366: Domain of un 39.8 93 0.002 29.5 6.8 35 541-575 141-175 (193)
445 KOG2297 Predicted translation 39.8 4.3E+02 0.0093 27.0 19.0 21 439-459 321-341 (412)
446 PF07720 TPR_3: Tetratricopept 39.7 60 0.0013 21.0 3.6 27 649-675 5-33 (36)
447 PF13762 MNE1: Mitochondrial s 39.2 2.9E+02 0.0062 24.8 10.5 81 477-557 42-128 (145)
448 KOG4077 Cytochrome c oxidase, 39.2 1.9E+02 0.004 25.2 7.3 47 492-538 67-113 (149)
449 PF14669 Asp_Glu_race_2: Putat 38.7 3.4E+02 0.0075 25.6 12.2 56 444-499 137-206 (233)
450 KOG2422 Uncharacterized conser 38.5 6.2E+02 0.013 28.4 19.4 95 481-575 349-450 (665)
451 PF10366 Vps39_1: Vacuolar sor 38.3 1.4E+02 0.003 25.2 6.7 26 407-432 42-67 (108)
452 PF11846 DUF3366: Domain of un 38.2 1E+02 0.0023 29.2 6.9 47 628-676 129-175 (193)
453 KOG2422 Uncharacterized conser 38.0 6.3E+02 0.014 28.4 18.2 125 167-291 249-405 (665)
454 KOG1925 Rac1 GTPase effector F 37.7 63 0.0014 34.5 5.4 12 103-114 282-293 (817)
455 PF09670 Cas_Cas02710: CRISPR- 37.6 4.2E+02 0.0091 28.4 11.9 52 450-502 142-197 (379)
456 PF09670 Cas_Cas02710: CRISPR- 37.0 5.3E+02 0.011 27.6 12.6 51 416-467 143-197 (379)
457 PF01690 PLRV_ORF5: Potato lea 36.9 29 0.00062 37.1 2.9 29 6-34 5-33 (465)
458 PRK10941 hypothetical protein; 36.7 4.3E+02 0.0094 26.7 11.1 86 404-490 181-267 (269)
459 PF15297 CKAP2_C: Cytoskeleton 36.3 2.7E+02 0.0059 28.9 9.5 87 157-243 104-190 (353)
460 PF14853 Fis1_TPR_C: Fis1 C-te 36.0 1.4E+02 0.003 21.4 5.3 51 157-207 2-52 (53)
461 PF13934 ELYS: Nuclear pore co 36.0 2.5E+02 0.0055 27.4 9.2 105 138-250 90-198 (226)
462 KOG0162 Myosin class I heavy c 35.7 2E+02 0.0043 32.8 8.9 90 1-90 961-1052(1106)
463 PRK14948 DNA polymerase III su 35.1 1E+02 0.0022 35.5 7.2 69 2-70 526-594 (620)
464 KOG2236 Uncharacterized conser 34.4 1.5E+02 0.0032 31.8 7.4 77 6-82 404-482 (483)
465 PF11663 Toxin_YhaV: Toxin wit 34.3 41 0.00089 29.4 2.9 34 521-556 107-140 (140)
466 PTZ00449 104 kDa microneme/rho 34.2 4.5E+02 0.0097 28.8 10.8 95 4-98 573-669 (943)
467 KOG4825 Component of synaptic 34.1 1E+02 0.0022 32.7 6.1 71 3-73 273-345 (666)
468 PRK13342 recombination factor 34.0 6.5E+02 0.014 27.4 20.1 171 279-467 152-333 (413)
469 PF08311 Mad3_BUB1_I: Mad3/BUB 33.9 3.2E+02 0.0069 23.8 10.1 97 159-255 29-126 (126)
470 KOG2062 26S proteasome regulat 33.3 8.3E+02 0.018 28.4 34.4 531 139-771 127-727 (929)
471 PF04762 IKI3: IKI3 family; I 33.3 9.9E+02 0.021 29.3 17.4 199 233-465 699-927 (928)
472 PF12968 DUF3856: Domain of Un 33.0 2.3E+02 0.005 24.4 6.9 64 644-707 54-129 (144)
473 KOG0686 COP9 signalosome, subu 33.0 6.4E+02 0.014 27.0 16.0 169 230-412 152-352 (466)
474 PF11663 Toxin_YhaV: Toxin wit 33.0 42 0.00091 29.3 2.7 36 203-240 105-140 (140)
475 PF11848 DUF3368: Domain of un 32.7 1.7E+02 0.0036 20.4 5.3 38 410-447 8-45 (48)
476 KOG4077 Cytochrome c oxidase, 32.4 2.8E+02 0.006 24.2 7.3 60 282-342 67-126 (149)
477 PF15297 CKAP2_C: Cytoskeleton 31.6 4.5E+02 0.0098 27.4 10.2 77 476-554 105-185 (353)
478 KOG1922 Rho GTPase effector BN 31.4 2E+02 0.0043 34.8 9.2 88 2-89 300-389 (833)
479 KOG3837 Uncharacterized conser 31.4 3.9E+02 0.0084 28.4 9.6 95 3-97 48-202 (523)
480 PRK10564 maltose regulon perip 31.4 89 0.0019 31.7 5.1 42 372-413 260-301 (303)
481 cd08819 CARD_MDA5_2 Caspase ac 31.2 2.8E+02 0.0061 22.3 7.7 69 246-321 20-88 (88)
482 KOG4814 Uncharacterized conser 31.2 8.4E+02 0.018 27.8 13.0 176 621-796 290-485 (872)
483 cd00280 TRFH Telomeric Repeat 31.0 3E+02 0.0064 25.8 7.9 67 490-559 85-158 (200)
484 KOG4425 Uncharacterized conser 30.8 98 0.0021 32.8 5.4 93 2-94 61-187 (900)
485 PF06957 COPI_C: Coatomer (COP 30.7 7.1E+02 0.015 27.0 11.9 120 519-714 214-336 (422)
486 KOG0132 RNA polymerase II C-te 30.5 4.7E+02 0.01 30.3 10.8 93 3-95 573-671 (894)
487 PF12968 DUF3856: Domain of Un 30.4 2.5E+02 0.0055 24.2 6.7 75 147-221 46-128 (144)
488 PF00244 14-3-3: 14-3-3 protei 30.4 5.4E+02 0.012 25.4 13.3 186 375-577 7-202 (236)
489 PF10255 Paf67: RNA polymerase 30.2 3.1E+02 0.0067 29.5 9.2 118 133-255 52-191 (404)
490 KOG4521 Nuclear pore complex, 30.0 1.1E+03 0.025 29.0 14.7 160 162-324 926-1127(1480)
491 PF10516 SHNi-TPR: SHNi-TPR; 29.6 97 0.0021 20.4 3.4 29 713-741 1-29 (38)
492 KOG2070 Guanine nucleotide exc 29.4 2.3E+02 0.005 30.6 7.8 80 1-89 421-500 (661)
493 COG5108 RPO41 Mitochondrial DN 29.4 4.6E+02 0.0099 29.9 10.2 101 479-605 33-141 (1117)
494 PF07174 FAP: Fibronectin-atta 29.0 2.5E+02 0.0055 27.8 7.4 62 2-74 43-104 (297)
495 PF04190 DUF410: Protein of un 28.4 6.2E+02 0.013 25.4 19.4 191 239-464 1-216 (260)
496 PF11838 ERAP1_C: ERAP1-like C 28.3 6.7E+02 0.015 25.8 17.2 190 306-499 45-262 (324)
497 PRK09857 putative transposase; 28.1 4.7E+02 0.01 26.8 9.9 113 358-476 165-277 (292)
498 PF09477 Type_III_YscG: Bacter 27.5 3.8E+02 0.0082 22.6 8.8 79 454-539 21-99 (116)
499 PF10475 DUF2450: Protein of u 27.4 6.8E+02 0.015 25.6 16.9 209 135-359 9-222 (291)
500 KOG3636 Uncharacterized conser 27.3 8.1E+02 0.018 26.4 14.7 190 190-382 52-273 (669)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-73 Score=678.38 Aligned_cols=648 Identities=18% Similarity=0.231 Sum_probs=517.8
Q ss_pred HHHHHHHhccCCcchHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhc
Q 003433 127 EALHHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRL 206 (820)
Q Consensus 127 ~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 206 (820)
.++..+.. .+....+..+++.+.. .+...|+.+|.+|++.|++++|+++|++|...+. .++..+|+.++.+|++.
T Consensus 126 ~li~~~~~-~g~~~~A~~~f~~m~~--~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~--~Pd~~t~~~ll~~~~~~ 200 (857)
T PLN03077 126 AMLSMFVR-FGELVHAWYVFGKMPE--RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV--RPDVYTFPCVLRTCGGI 200 (857)
T ss_pred HHHHHHHh-CCChHHHHHHHhcCCC--CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCChhHHHHHHHHhCCc
Confidence 33443333 3344455667777753 3456899999999999999999999999998764 44567999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHH
Q 003433 207 GKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEI 286 (820)
Q Consensus 207 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~ 286 (820)
+++..+.+++..+.+.|..+|+.++++||.+|++.|++++|.++|++|.+ ||.++||++|.+|++.| ++++|+++
T Consensus 201 ~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g-~~~eAl~l 275 (857)
T PLN03077 201 PDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENG-ECLEGLEL 275 (857)
T ss_pred cchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCC-CHHHHHHH
Confidence 99999999999999999999999999999999999999999999999975 79999999999999999 99999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC
Q 003433 287 FDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNIS 366 (820)
Q Consensus 287 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 366 (820)
|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+||+|+.+|++.|++++|.++|++|..
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---- 351 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---- 351 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003433 367 PNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALL 446 (820)
Q Consensus 367 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 446 (820)
||.++|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.++..+|++|+
T Consensus 352 ~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li 431 (857)
T PLN03077 352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431 (857)
T ss_pred CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003433 447 GGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVE 526 (820)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 526 (820)
.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|..+|++|.+ ++.||..||+.++.+|++.|.++
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~ 506 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALM 506 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHH
Confidence 999999999999999999964 5889999999999999999999999999986 58899999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHH
Q 003433 527 SAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFG 606 (820)
Q Consensus 527 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (820)
.+.+++..|.+.|+.+|..++++|+++|++.|++++|.+++++. . ++ ...|+.++..|+
T Consensus 507 ~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~--~d------------------~~s~n~lI~~~~ 565 (857)
T PLN03077 507 CGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-E--KD------------------VVSWNILLTGYV 565 (857)
T ss_pred HhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-C--CC------------------hhhHHHHHHHHH
Confidence 99999999999999999999999999999999999988876653 1 11 145677777666
Q ss_pred HHHHH-----------HhcCCcc---------chhhhhhHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 003433 607 QLVAE-----------KAGQGKK---------ENRCRQEILCILGVFQKMH-KLKIKPNVVTFSAILNACSRCNSFEDAS 665 (820)
Q Consensus 607 ~~~~~-----------~~~~~~~---------~~~~~~~~~~Al~~~~~m~-~~~~~Pd~~~~~~ll~a~~~~g~~~eA~ 665 (820)
+.+.. ..|.... .....|..++|+++|++|. ..|+.||..+|++|+++|++.|+++||.
T Consensus 566 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~ 645 (857)
T PLN03077 566 AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645 (857)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 43200 0000000 0011134444555555554 3445555555555555555555555555
Q ss_pred HHHHHHhhcCCchhHHHHHHHhccc-cchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhh
Q 003433 666 MLLEELRLFDNQVYGVAHGLLMGYR-DNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQV 744 (820)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 744 (820)
+++++|. ..|+ ..++..++.+++ .++.+.|+...+++++++|++ ..+|..|+++|.+.|+|++|.++++.|+++|+
T Consensus 646 ~~~~~m~-~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~-~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~ 722 (857)
T PLN03077 646 NFINKMP-ITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNS-VGYYILLCNLYADAGKWDEVARVRKTMRENGL 722 (857)
T ss_pred HHHHHCC-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-cchHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Confidence 5555542 1111 222333344443 566777888888888999965 77899999999999999999999999999999
Q ss_pred hhh---hhhccchhhhhcchhHHH----HHHHHHHHHHH-HHhhcCCCCC--------------------hhHHHHHHHh
Q 003433 745 WEN---VWSESCLDLHLMSSGAAR----AMVHAWLLNIH-SIVFEGHELP--------------------KLLRYMIICL 796 (820)
Q Consensus 745 ~~~---~~~~~~~d~~~~~~g~~~----~~~~~w~~~~~-~~~~~g~~~~--------------------~~~~~~~~~~ 796 (820)
++. +|++..+.+|.|..|+.. ..+..-+.++. ++.+.|-... ..+.|..|-.
T Consensus 723 ~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~~~~~hse~la~a~~l~ 802 (857)
T PLN03077 723 TVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCGHSERLAIAFGLI 802 (857)
T ss_pred CCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccccHHHHHHHHHhccHHHHHHHhhh
Confidence 764 688888889988877642 22333233433 3333443211 1122222222
Q ss_pred hhhhhHHHHHHhhhcccccccc
Q 003433 797 SVADECLLLLKFHLNRICLSCS 818 (820)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~ 818 (820)
.. ..+.-++..+++|+|+||-
T Consensus 803 ~~-~~~~~i~i~knlr~c~dch 823 (857)
T PLN03077 803 NT-VPGMPIWVTKNLYMCENCH 823 (857)
T ss_pred cC-CCCCeEEEeCCCEeCccHH
Confidence 21 3556678889999999994
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.4e-71 Score=643.01 Aligned_cols=577 Identities=21% Similarity=0.297 Sum_probs=512.9
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 235 (820)
...|..++..|++.|++++|+++|++|.+.+... .+...+..++..|.+.|.+++|..+|+.|.. ||..+|+.++
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~-~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL 444 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLD-MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLM 444 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHH
Confidence 4468889999999999999999999999887533 3456778899999999999999999999964 7999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 003433 236 SAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW 315 (820)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 315 (820)
.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.| ++++|.++|++|.+.|+.||..||+.||.+|++.|++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G-~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG-KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchh--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003433 316 EAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPA--KNISPNVVTYSTMIDGYAKAGRLDDALNMFS 393 (820)
Q Consensus 316 ~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 393 (820)
++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||.++|++||.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 6789999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003433 394 EMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPN 473 (820)
Q Consensus 394 ~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 473 (820)
+|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 474 LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDA 553 (820)
Q Consensus 474 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 553 (820)
..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|+++|++|.+.|+.||..||++++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchh---------hhh
Q 003433 554 FGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENR---------CRQ 624 (820)
Q Consensus 554 ~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 624 (820)
|++.|++++|.+++.+.++...... ...++.++.++.+.- .+.+....... ...
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd----------------~~tynsLIglc~~~y-~ka~~l~~~v~~f~~g~~~~~n~ 826 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPN----------------LVMCRCITGLCLRRF-EKACALGEPVVSFDSGRPQIENK 826 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHHHH-HHHhhhhhhhhhhhccccccccc
Confidence 9999999999999988877654331 134566665533211 11122111110 112
Q ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhccccchHHHHHHHHHHH
Q 003433 625 EILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEV 704 (820)
Q Consensus 625 ~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 704 (820)
...+|+.+|++|++.|+.||.+||+.++.++++.+.++.+..+++.|...
T Consensus 827 w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~------------------------------ 876 (1060)
T PLN03218 827 WTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS------------------------------ 876 (1060)
T ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC------------------------------
Confidence 35689999999999999999999999997777777777776666655311
Q ss_pred hhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhhhhhhh---ccchhhhhcchhHHHHHHHHHHHHHHHHhhc
Q 003433 705 KLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWS---ESCLDLHLMSSGAARAMVHAWLLNIHSIVFE 781 (820)
Q Consensus 705 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~d~~~~~~g~~~~~~~~w~~~~~~~~~~ 781 (820)
....+..+|++|++.+.+. .++|..++++|...|+.+.... ...+|+|.++.|+|+.+++.|++.++.++..
T Consensus 877 ---~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~~~~~~~aa~~~l~~wl~~~~~~~~~ 951 (1060)
T PLN03218 877 ---ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVSFKKSPIVIDAEELPVFAAEVYLLTILKGLKHRLAA 951 (1060)
T ss_pred ---CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcccccCceEEEcccCcchhHHHHHHHHHHHHHHHHhc
Confidence 1112245699999987332 3689999999999998765311 2469999999999999999999999999999
Q ss_pred CCCCChhHH
Q 003433 782 GHELPKLLR 790 (820)
Q Consensus 782 g~~~~~~~~ 790 (820)
|.++|.+.+
T Consensus 952 g~~lp~~~~ 960 (1060)
T PLN03218 952 GAKLPNVTI 960 (1060)
T ss_pred cCcCCccee
Confidence 999999777
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.3e-68 Score=616.51 Aligned_cols=544 Identities=22% Similarity=0.349 Sum_probs=481.0
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (820)
..|+.+|..|.+.|++++|+++|++|...+.. ..+..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.|+.
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~-~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPF-TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 46888999999999999999999999876532 34567999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 003433 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (820)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 316 (820)
+|++.|++++|.++|++|.+ ||.++||.+|.+|++.| ++++|+++|++|.+.|+.||..||+.++.+|++.|..+
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g-~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAG-NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCc-CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 99999999999999999975 89999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 317 AARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK 396 (820)
Q Consensus 317 ~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 396 (820)
.+.+++..+.+.|+.+|..+||+|+++|++.|++++|.++|++|.. +|.++||+||.+|++.|++++|+++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 499999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003433 397 FLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLT 476 (820)
Q Consensus 397 ~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 476 (820)
+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.+|..+|++|+++|++.|++++|.++|++|. .+|..+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996 479999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHh
Q 003433 477 YSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK-EGIRPNVVTYNSIIDAFG 555 (820)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~ 555 (820)
||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|.+ .|+.|+..+|+.++++|+
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986 599999999999999999
Q ss_pred hcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHH
Q 003433 556 RSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQK 635 (820)
Q Consensus 556 ~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~ 635 (820)
+.|++++|. ++|++
T Consensus 474 r~G~~~eA~------------------------------------------------------------------~~~~~ 487 (697)
T PLN03081 474 REGLLDEAY------------------------------------------------------------------AMIRR 487 (697)
T ss_pred hcCCHHHHH------------------------------------------------------------------HHHHH
Confidence 999877654 35554
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhccccchHHHHHHHHHHHhhcCCCcchhH
Q 003433 636 MHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAF 715 (820)
Q Consensus 636 m~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 715 (820)
| ++.||..+|++|+++|+..|+++.|..+++++.+ ++|++ ...
T Consensus 488 ~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~---------------------------------~~p~~-~~~ 530 (697)
T PLN03081 488 A---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG---------------------------------MGPEK-LNN 530 (697)
T ss_pred C---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC---------------------------------CCCCC-Ccc
Confidence 4 5889999999999999999999988877766653 34533 456
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHhhhhhhhhh---hhhccchhhhhcchhHHH----HHHHHHHHHH-HHHhhcCCCCC-
Q 003433 716 YNALTDMLWHFGQKRGAQLVVLEGKRRQVWEN---VWSESCLDLHLMSSGAAR----AMVHAWLLNI-HSIVFEGHELP- 786 (820)
Q Consensus 716 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~g~~~----~~~~~w~~~~-~~~~~~g~~~~- 786 (820)
|+.|+++|.+.|+|++|.+++++|+++|+.+. +|++..+.+|.|..|+.. ..+..-+.++ .++.+.|....
T Consensus 531 y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~ 610 (697)
T PLN03081 531 YVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEE 610 (697)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 99999999999999999999999999998643 588877778877766432 1121222232 23333442111
Q ss_pred --------------------hhHHHHHHHhhhhhhHHHHHHhhhcccccccc
Q 003433 787 --------------------KLLRYMIICLSVADECLLLLKFHLNRICLSCS 818 (820)
Q Consensus 787 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (820)
..+.|..|-... .++.-++..+++|+|+||-
T Consensus 611 ~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~-~~~~~i~i~knlr~c~dch 661 (697)
T PLN03081 611 NELLPDVDEDEEKVSGRYHSEKLAIAFGLINT-SEWTPLQITQSHRICKDCH 661 (697)
T ss_pred chhhccccHHHHHHHHHhccHHHHHHhhCccC-CCCCeEEEecCCEECCCch
Confidence 122233333322 4566788899999999995
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.3e-66 Score=615.70 Aligned_cols=591 Identities=19% Similarity=0.215 Sum_probs=446.4
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (820)
..++.++..|++.|+++.|+++|+.|.. .+..+|+.++.+|++.|++++|.++|++|...|+.||.++|+.++.
T Consensus 122 ~~~n~li~~~~~~g~~~~A~~~f~~m~~------~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~ 195 (857)
T PLN03077 122 RLGNAMLSMFVRFGELVHAWYVFGKMPE------RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLR 195 (857)
T ss_pred hHHHHHHHHHHhCCChHHHHHHHhcCCC------CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 3566777777788888888888777743 2345777788888888888888888888877777778888888888
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 003433 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (820)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 316 (820)
++++.++++.+.+++..|.+.|+.||..+||.||.+|++.| ++++|.++|++|. .+|..+||++|.+|++.|+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g-~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~ 270 (857)
T PLN03077 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG-DVVSARLVFDRMP----RRDCISWNAMISGYFENGECL 270 (857)
T ss_pred HhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC-CHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHH
Confidence 87777777778888888877777778888888888888888 7888888888775 357778888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 317 AARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK 396 (820)
Q Consensus 317 ~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 396 (820)
+|.++|++|.+.|+.||..+|+.++.+|++.|+.+.|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|.
T Consensus 271 eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 350 (857)
T PLN03077 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350 (857)
T ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888775
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003433 397 FLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLT 476 (820)
Q Consensus 397 ~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 476 (820)
.+|.++|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.++..+
T Consensus 351 ----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~ 426 (857)
T PLN03077 351 ----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVV 426 (857)
T ss_pred ----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHH
Confidence 4677788888888888888888888888888778888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh
Q 003433 477 YSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR 556 (820)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 556 (820)
|+.||.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||++++.+|++
T Consensus 427 ~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 427 ANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACAR 501 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhh
Confidence 88888888888888888888887754 5777888888888888888888888888875 478888888888888888
Q ss_pred cCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHH
Q 003433 557 SATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKM 636 (820)
Q Consensus 557 ~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m 636 (820)
.|.++++.+++..+++..... ....+++++++|++++ ++++|.++|++|
T Consensus 502 ~g~l~~~~~i~~~~~~~g~~~----------------~~~~~naLi~~y~k~G---------------~~~~A~~~f~~~ 550 (857)
T PLN03077 502 IGALMCGKEIHAHVLRTGIGF----------------DGFLPNALLDLYVRCG---------------RMNYAWNQFNSH 550 (857)
T ss_pred hchHHHhHHHHHHHHHhCCCc----------------cceechHHHHHHHHcC---------------CHHHHHHHHHhc
Confidence 888888887776666543322 1256788999999764 778899999987
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHH-HHHHHhcc-ccchHHHHHHHHHHHh-hcCCCcch
Q 003433 637 HKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGV-AHGLLMGY-RDNIWVQALSLFDEVK-LMDSSTAS 713 (820)
Q Consensus 637 ~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~A~~~~~~~~-~~~~~~~~ 713 (820)
.||.++|++|+.+|++.|+.++|.++|++|.+.+.....+ ...++.++ +.|.+++|.++|++|. +.+..++.
T Consensus 551 -----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 551 -----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred -----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 6899999999999999999999999999998753322222 23345555 6899999999999998 44444557
Q ss_pred hHHHHHHHHHhhcCchHHHHHHHHHhhhhhhhhhhhhcc--chhhhhcchhHHHHHHHHHHHHHHHHhhcCCCCC-hhHH
Q 003433 714 AFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSES--CLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELP-KLLR 790 (820)
Q Consensus 714 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~g~~~~~~~~w~~~~~~~~~~g~~~~-~~~~ 790 (820)
.+|++++++|++.|++++|.+++++|.- ......|... ...+|.. ...++.+.+ .+.+ ++...... .+++
T Consensus 626 ~~y~~lv~~l~r~G~~~eA~~~~~~m~~-~pd~~~~~aLl~ac~~~~~-~e~~e~~a~----~l~~-l~p~~~~~y~ll~ 698 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKMPI-TPDPAVWGALLNACRIHRH-VELGELAAQ----HIFE-LDPNSVGYYILLC 698 (857)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCC-hHHHHHHHH----HHHh-hCCCCcchHHHHH
Confidence 8899999999999999999999998731 1111233321 1223322 111111111 1111 22222112 2778
Q ss_pred HHHHHhhhhhhHHHHHHhhh
Q 003433 791 YMIICLSVADECLLLLKFHL 810 (820)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~ 810 (820)
.+++..|.|+|+...++.--
T Consensus 699 n~ya~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 699 NLYADAGKWDEVARVRKTMR 718 (857)
T ss_pred HHHHHCCChHHHHHHHHHHH
Confidence 88888999999988886543
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.4e-64 Score=584.76 Aligned_cols=508 Identities=20% Similarity=0.313 Sum_probs=443.0
Q ss_pred CcchHHHHHHhhcccCC-Chh--hHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHH
Q 003433 138 DDVSLGDILKKFEFKLC-GAD--DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKN 214 (820)
Q Consensus 138 ~~~~~~~~l~~~~~~~~-~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 214 (820)
....+..+++.|..... .++ .+..++..|.+.|.+++|+++|+.|.. ++..+|+.++.+|++.|++++|.+
T Consensus 385 ~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~------pd~~Tyn~LL~a~~k~g~~e~A~~ 458 (1060)
T PLN03218 385 RIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN------PTLSTFNMLMSVCASSQDIDGALR 458 (1060)
T ss_pred CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC------CCHHHHHHHHHHHHhCcCHHHHHH
Confidence 34556677888876553 222 456689999999999999999998853 456799999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Q 003433 215 IFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNG 294 (820)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g 294 (820)
+|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||.++|+.||.+|++.| ++++|+++|++|.+.|
T Consensus 459 lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G-~~eeAl~lf~~M~~~G 537 (1060)
T PLN03218 459 VLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG-QVAKAFGAYGIMRSKN 537 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHH
Q 003433 295 VQPDRITFNSLLAVCSRGGLWEAARNLFNEMVH--RGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTY 372 (820)
Q Consensus 295 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 372 (820)
+.||..+|+.||.+|++.|++++|.++|++|.+ .|+.||.++|++|+.+|++.|++++|+++|++|.+.|+.|+..+|
T Consensus 538 v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ty 617 (1060)
T PLN03218 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY 617 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHH
Confidence 999999999999999999999999999999986 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003433 373 STMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQ 452 (820)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 452 (820)
+++|.+|++.|++++|.++|++|.+.|+.||..+|+.||++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.
T Consensus 618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~ 697 (1060)
T PLN03218 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697 (1060)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003433 453 GKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLL 532 (820)
Q Consensus 453 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 532 (820)
|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|
T Consensus 698 G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~ 777 (1060)
T PLN03218 698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhh------------hhhhhhhccCchhhhhhccchHH
Q 003433 533 DEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKES------------ANLDAMCSQDDKDVQEAGRTDNQ 600 (820)
Q Consensus 533 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 600 (820)
++|.+.|+.||..+|++|++.|.+ .++++....+..+...... ..+..|...+..+.. .+++.
T Consensus 778 ~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~---~T~~~ 852 (1060)
T PLN03218 778 SQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM---EVLSQ 852 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCH---HHHHH
Confidence 999999999999999999987642 3444443322222111100 000111111111110 22333
Q ss_pred HHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhc
Q 003433 601 IIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLF 674 (820)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~ 674 (820)
++..+. ..+....+..+++.|...+..|+..+|++|+++|++. .++|..+|++|...
T Consensus 853 vL~cl~---------------~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 853 VLGCLQ---------------LPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASL 909 (1060)
T ss_pred HHHHhc---------------ccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHc
Confidence 332211 1125667778888887788889999999999998543 47899999999854
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.5e-58 Score=534.04 Aligned_cols=463 Identities=20% Similarity=0.320 Sum_probs=421.1
Q ss_pred HHHHHHHHhccCCcchHHHHHHhhcccC---CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHH
Q 003433 126 EEALHHVTAFARDDVSLGDILKKFEFKL---CGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISI 202 (820)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (820)
...+..+...++. ..+..++..+.... .+...|+.++.++.+.++++.|.+++..|.+.+. .++..+++.++.+
T Consensus 91 ~~~i~~l~~~g~~-~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~--~~~~~~~n~Li~~ 167 (697)
T PLN03081 91 CSQIEKLVACGRH-REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGF--EPDQYMMNRVLLM 167 (697)
T ss_pred HHHHHHHHcCCCH-HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CcchHHHHHHHHH
Confidence 3344444444443 33445555554322 3456789999999999999999999999998874 3456799999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHH
Q 003433 203 LGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKH 282 (820)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~ 282 (820)
|++.|++++|+++|++|.+ +|+.+|+++|.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.| ..+.
T Consensus 168 y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~-~~~~ 242 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG-SARA 242 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC-cHHH
Confidence 9999999999999999964 6999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchh
Q 003433 283 VVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPA 362 (820)
Q Consensus 283 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 362 (820)
+.+++..+.+.|+.+|..+|+.|+.+|++.|++++|.++|++|.+ +|.++||+|+.+|++.|++++|+++|++|.+
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999964 5899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003433 363 KNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTY 442 (820)
Q Consensus 363 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 442 (820)
.|+.||..||++++.+|++.|++++|.+++.+|.+.|+.+|..+|++||++|++.|++++|.++|++|. .+|..+|
T Consensus 319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~ 394 (697)
T PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISW 394 (697)
T ss_pred cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 5799999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHH
Q 003433 443 NALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ-AGLKADVVLYSALIDALCK 521 (820)
Q Consensus 443 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~ 521 (820)
|+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999976 6999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHH
Q 003433 522 NGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQI 601 (820)
Q Consensus 522 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (820)
.|++++|.+++++| ++.||..+|++|+.+|...|+++.|..
T Consensus 475 ~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~------------------------------------ 515 (697)
T PLN03081 475 EGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRL------------------------------------ 515 (697)
T ss_pred cCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHH------------------------------------
Confidence 99999999999876 578999999999999999998876644
Q ss_pred HHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcC
Q 003433 602 IKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFD 675 (820)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~ 675 (820)
+++++.+ +.|+ ..+|+.|+++|++.|++++|.+++++|.+.+
T Consensus 516 ------------------------------~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 516 ------------------------------AAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred ------------------------------HHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 4444443 5664 5689999999999999999999999998654
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.8e-34 Score=350.94 Aligned_cols=572 Identities=13% Similarity=0.073 Sum_probs=447.2
Q ss_pred hcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003433 149 FEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTV 228 (820)
Q Consensus 149 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 228 (820)
+...+..+..+..+...+.+.|++++|++.++.++... +.+..++..++..+.+.|++++|.++|+++.+..+ .+.
T Consensus 322 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 397 (899)
T TIGR02917 322 LKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD---PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENA 397 (899)
T ss_pred HHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCH
Confidence 33344455667778888899999999999999888764 34456778889999999999999999999887643 367
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 229 YAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAV 308 (820)
Q Consensus 229 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 308 (820)
..+..+...+...|++++|++.|+++.+.... +...+..++..+.+.| ++++|..+++++.... ..+..++..+...
T Consensus 398 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 474 (899)
T TIGR02917 398 AARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSG-QFDKALAAAKKLEKKQ-PDNASLHNLLGAI 474 (899)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcC-CHHHHHHHHHHHHHhC-CCCcHHHHHHHHH
Confidence 78888889999999999999999998875433 3445566777888888 8999999999988753 3467788888999
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003433 309 CSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDA 388 (820)
Q Consensus 309 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 388 (820)
+...|++++|.+.|+++.+.. +.+...+..++..+...|++++|.++|+++...+.. +..++..+...+.+.|+.++|
T Consensus 475 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 552 (899)
T TIGR02917 475 YLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEA 552 (899)
T ss_pred HHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999988764 345677888889999999999999999998876533 677888899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003433 389 LNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKAD 468 (820)
Q Consensus 389 ~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 468 (820)
..+++++...+ +.+...+..++..|.+.|++++|..+++.+.+.. +.+..+|..++.+|.+.|++++|...|+++.+.
T Consensus 553 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 630 (899)
T TIGR02917 553 VAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL 630 (899)
T ss_pred HHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999988765 5566778888899999999999999999887654 567888999999999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003433 469 CVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYN 548 (820)
Q Consensus 469 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 548 (820)
. +.+...+..++.+|.+.|++++|..+|+++.+... .+..+|..++..+...|++++|.++++.+.+.+ ..+...+.
T Consensus 631 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 707 (899)
T TIGR02917 631 Q-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFE 707 (899)
T ss_pred C-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHH
Confidence 3 44677788888999999999999999999887653 367888889999999999999999999998764 34666888
Q ss_pred HHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHH
Q 003433 549 SIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILC 628 (820)
Q Consensus 549 ~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (820)
.+...+.+.|++++|+..+++++...+... .+..+..++.+. |+.++
T Consensus 708 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~---------------g~~~~ 754 (899)
T TIGR02917 708 LEGDLYLRQKDYPAAIQAYRKALKRAPSSQ------------------NAIKLHRALLAS---------------GNTAE 754 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCch------------------HHHHHHHHHHHC---------------CCHHH
Confidence 888888999999999999998888766541 122233344322 36677
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhc
Q 003433 629 ILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLM 707 (820)
Q Consensus 629 Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~ 707 (820)
|++.++++++... .+..++..++..|.+.|++++|.++|+++.+.+|++..+..++...+ ..|+ .+|+.+++++++.
T Consensus 755 A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 755 AVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 8888888877322 25667788888888888888888888888888887777666665554 3455 7788888888888
Q ss_pred CCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhhhhhhhccchhhhhcchhHHHHHHHHH
Q 003433 708 DSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAW 771 (820)
Q Consensus 708 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~~w 771 (820)
.|++ +..+..++.+|.+.|++++|.++++++.+.+..+.....+.++++ ...|....|...|
T Consensus 833 ~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~ 894 (899)
T TIGR02917 833 APNI-PAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALAL-LATGRKAEARKEL 894 (899)
T ss_pred CCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH-HHcCCHHHHHHHH
Confidence 8854 666888888888888888888888888776654332222334443 3367667776665
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-33 Score=344.05 Aligned_cols=629 Identities=14% Similarity=0.047 Sum_probs=437.7
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003433 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (820)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 234 (820)
.+..+......+...|++++|++.|+.+++.+ +.....+..++..+...|++++|...|+.+.+..+ .+...+..+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l 335 (899)
T TIGR02917 260 SPLAHYLKALVDFQKKNYEDARETLQDALKSA---PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLL 335 (899)
T ss_pred CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHH
Confidence 34444445555667788888888888887764 22233455567777788888888888888877643 356677778
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 003433 235 ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL 314 (820)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 314 (820)
+..+.+.|++++|...++.+.+... .+...+..+...+.+.| ++++|.++|+++.+.... +...+..+...+...|+
T Consensus 336 a~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 412 (899)
T TIGR02917 336 ASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALG-DFEKAAEYLAKATELDPE-NAAARTQLGISKLSQGD 412 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCC
Confidence 8888888888888888888876543 25677777888888888 888888888888775432 56667777777888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003433 315 WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSE 394 (820)
Q Consensus 315 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 394 (820)
+++|.+.|+.+.+... ........++..+.+.|++++|+++++++.... ..+..+|..+...|...|++++|.+.|++
T Consensus 413 ~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 490 (899)
T TIGR02917 413 PSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEK 490 (899)
T ss_pred hHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 8888888888877542 234455667777888888888888888877653 33667778888888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003433 395 MKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNL 474 (820)
Q Consensus 395 m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 474 (820)
+.+.. +.+...+..++..+...|++++|.+.|+++.+.. +.+..++..+...+.+.|+.++|..+|+++...+ +.+.
T Consensus 491 a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 567 (899)
T TIGR02917 491 ALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEI 567 (899)
T ss_pred HHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccch
Confidence 77654 4455667777778888888888888888877655 4567777788888888888888888888877653 4456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 475 LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAF 554 (820)
Q Consensus 475 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 554 (820)
..+..++..|.+.|++++|..+++.+.+... .+...|..++.+|.+.|++++|+..|+++.+.. ..+...+..+..++
T Consensus 568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 568 EPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAY 645 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 6777778888888888888888888876543 367778888888888888888888888887642 22455777777788
Q ss_pred hhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCC------ccchhhhhhHHH
Q 003433 555 GRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQG------KKENRCRQEILC 628 (820)
Q Consensus 555 ~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 628 (820)
.+.|++++|+..++++++..+............... ...+...+..+..+........ .......+++++
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA----AKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHH
Confidence 888888888888888877766543221111111000 0222333333333221100000 000223457889
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhc
Q 003433 629 ILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLM 707 (820)
Q Consensus 629 Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~ 707 (820)
|++.|+++.. ..|+..++..++.++.+.|++++|.+.++++++.+|.+..+...+...+ ..|++++|+..|+++++.
T Consensus 722 A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 722 AIQAYRKALK--RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHHHh--hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 9999999987 4466677788899999999999999999999988888776666655545 578999999999999999
Q ss_pred CCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHhhcCCCCCh
Q 003433 708 DSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPK 787 (820)
Q Consensus 708 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~~w~~~~~~~~~~g~~~~~ 787 (820)
+|++ +..++.+++++.+.|+ .+|..+++++.+....+.......+.++ ...|....|+..+ +++++.+...+.
T Consensus 800 ~p~~-~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~A~~~~----~~a~~~~~~~~~ 872 (899)
T TIGR02917 800 APDN-AVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLL-VEKGEADRALPLL----RKAVNIAPEAAA 872 (899)
T ss_pred CCCC-HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHH-HHcCCHHHHHHHH----HHHHhhCCCChH
Confidence 9965 6779999999999999 8899999888765433222112223333 3356666666554 566665543343
Q ss_pred ---hHHHHHHHhhhhhhHHHHHHhhh
Q 003433 788 ---LLRYMIICLSVADECLLLLKFHL 810 (820)
Q Consensus 788 ---~~~~~~~~~~~~~~~~~~~~~~~ 810 (820)
.+.......|..+|+...++.-+
T Consensus 873 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 873 IRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 22333334488999888877643
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1.6e-25 Score=272.63 Aligned_cols=617 Identities=12% Similarity=0.042 Sum_probs=357.6
Q ss_pred ccCCcchHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhH-------------HHHHHHH
Q 003433 135 FARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGK-------------LASAMIS 201 (820)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------------~~~~l~~ 201 (820)
..+++.+...+.+.+...+.+++.+..++..+.+.|+.++|.+.+++..+..+..+.... ....++.
T Consensus 41 ~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ 120 (1157)
T PRK11447 41 THREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQAR 120 (1157)
T ss_pred hCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHH
Confidence 344444444444445556667888888999999999999999999999988643322110 1133455
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHH
Q 003433 202 ILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFK 281 (820)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 281 (820)
.+.+.|++++|.+.|+.+.+.+.+........+.......|+.++|++.|+++.+..+. +...+..+...+...| +.+
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g-~~~ 198 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSG-RRD 198 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccC-CHH
Confidence 78889999999999999987643322222222222233468999999999999886433 5667778888888888 899
Q ss_pred HHHHHHHHHHHCCCCC----------------CH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 282 HVVEIFDDMLRNGVQP----------------DR---ITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLD 342 (820)
Q Consensus 282 ~A~~~~~~m~~~g~~p----------------~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 342 (820)
+|+..++++.+..... +. ..+...+..+-.....+.|...+.++......|+.. ...+..
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~ 277 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGL 277 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHH
Confidence 9999999886542110 00 001111111111122334444444433322122211 122344
Q ss_pred HHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHH------------HH
Q 003433 343 AICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGL-DRVSY------------NT 409 (820)
Q Consensus 343 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-d~~~~------------~~ 409 (820)
.+...|++++|+..|++..+.... +...+..|..+|.+.|++++|+..|++..+..... +...+ ..
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 555666666666666666654322 45566666666666666666666666666542111 11111 11
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003433 410 VLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGL 489 (820)
Q Consensus 410 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 489 (820)
+...+.+.|++++|+..|+++++.. +.+...+..+...|...|++++|++.|+++++.. +.+...+..+...|. .++
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcC
Confidence 2334556666666666666666554 3445556666666666666666666666666542 223444555555543 345
Q ss_pred HHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCch
Q 003433 490 YKEAMQIFREFKQAGLK--------ADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYNSIIDAFGRSATT 560 (820)
Q Consensus 490 ~~~A~~~~~~m~~~~~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~ 560 (820)
.++|..+++.+...... .....+..+...+...|++++|++.|+++++. .|+ ...+..+...|.+.|++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 56666555543221000 01122344455555666666666666666653 333 33555555666666666
Q ss_pred hhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHH----------------HHhcCCccchhhhh
Q 003433 561 ECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVA----------------EKAGQGKKENRCRQ 624 (820)
Q Consensus 561 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~ 624 (820)
++|+..++++++..|...........-... ...+...+..+.++.. ...-.........+
T Consensus 512 ~~A~~~l~~al~~~P~~~~~~~a~al~l~~----~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 512 SQADALMRRLAQQKPNDPEQVYAYGLYLSG----SDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 666666666665554433211100000000 0001111111111000 00000000122345
Q ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHH
Q 003433 625 EILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDE 703 (820)
Q Consensus 625 ~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~ 703 (820)
+.++|+.+++. ...+...+..++..+.+.|++++|++.|+++++.+|++.....++...+ ..|++++|++.+++
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77888888772 2234556778999999999999999999999999999888877776655 57899999999999
Q ss_pred HhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhhhh------hhhccchhhhhcchhHHHHHHHHH
Q 003433 704 VKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWEN------VWSESCLDLHLMSSGAARAMVHAW 771 (820)
Q Consensus 704 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~~d~~~~~~g~~~~~~~~w 771 (820)
+++.+|.+ ...+..++.++...|++++|.++++++........ ....+.++++ ...|....|+..|
T Consensus 663 ll~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~-~~~G~~~~A~~~y 734 (1157)
T PRK11447 663 LPATANDS-LNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFE-AQTGQPQQALETY 734 (1157)
T ss_pred HhccCCCC-hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHH-HHcCCHHHHHHHH
Confidence 99998854 66788899999999999999999998876532211 1112234444 2367777777777
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=4.1e-25 Score=269.14 Aligned_cols=568 Identities=11% Similarity=0.044 Sum_probs=377.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003433 160 TFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYG 239 (820)
Q Consensus 160 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 239 (820)
..+.+.+...|++++|++.|+.++...+ +................|+.++|++.++++.+..+ .+...+..+...+.
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~p--~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~~~LA~ll~ 192 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGAP--PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLRNTLALLLF 192 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCCC--CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 3345678899999999999999987642 22111111122223356999999999999998754 47888999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCC--HHH-----------------HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHH
Q 003433 240 RSGYCQEAISVFNSMKRYNLKPN--LVT-----------------YNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRI 300 (820)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~~~~p~--~~~-----------------~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~ 300 (820)
..|+.++|++.|+++.+...... ... +...+..+-... ..+.|...+.++......|+..
T Consensus 193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~-~~~~A~~~L~~~~~~~~dp~~~ 271 (1157)
T PRK11447 193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGD-SVAAARSQLAEQQKQLADPAFR 271 (1157)
T ss_pred ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCch-HHHHHHHHHHHHHHhccCcchH
Confidence 99999999999999876321100 011 111122222222 3445555555554432233322
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCC-HHHHH------
Q 003433 301 TFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN-VVTYS------ 373 (820)
Q Consensus 301 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~------ 373 (820)
. ......+...|++++|+..|++.++.. +.+...+..|...|.+.|++++|+..|++..+...... ...|.
T Consensus 272 ~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 272 A-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred H-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 1 233556778899999999999988864 34678888899999999999999999998887543211 11121
Q ss_pred ------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 374 ------TMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLG 447 (820)
Q Consensus 374 ------~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 447 (820)
.+...+.+.|++++|+..|+++.+.. +.+...+..+...|...|++++|++.|+++++.. +.+...+..+..
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~ 427 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLAN 427 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 22456778899999999999988874 4566777788889999999999999999988765 455667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 448 GYGKQGKYDEVRRMFEQMKADCV--------SPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDAL 519 (820)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~~~--------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 519 (820)
.|. .++.++|..+++.+..... .-....+..+...+...|++++|++.|++.++..+. +...+..+...|
T Consensus 428 l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~ 505 (1157)
T PRK11447 428 LYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDL 505 (1157)
T ss_pred HHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 764 4577888888776532210 001223455677788888999999999888887643 567777888888
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhh--hhhhhhccCc----hhhh
Q 003433 520 CKNGLVESAVSLLDEMTKEGIRP-NVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESA--NLDAMCSQDD----KDVQ 592 (820)
Q Consensus 520 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~--~~~~~~~~~~----~~~~ 592 (820)
.+.|++++|+..|+++++. .| +...+..+...+.+.|+.++|+..+++......... .+...+.... ...-
T Consensus 506 ~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 8889999999998888764 33 344555555556777888888877765432111000 0000000000 0000
Q ss_pred hhccchHHHHHHHHHHHHHH--hcCCccchhhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHH
Q 003433 593 EAGRTDNQIIKVFGQLVAEK--AGQGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLE 669 (820)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~~ 669 (820)
.........+..+....... .......+...+++++|++.|++.++ ..| |...+..++.+|...|++++|++.|+
T Consensus 584 ~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 584 RDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 00011111222211000000 00000012345689999999999998 456 46678899999999999999999999
Q ss_pred HHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcch-----hHHHHHHHHHhhcCchHHHHHHHHHhhh
Q 003433 670 ELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTAS-----AFYNALTDMLWHFGQKRGAQLVVLEGKR 741 (820)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 741 (820)
.+.+.+|.+......+...+ ..|++++|.++++++++..|+..+ ..+..++.++...|++++|...++.++.
T Consensus 662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99988887766655554444 688999999999999987664422 4567789999999999999999998864
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=3.4e-25 Score=226.33 Aligned_cols=459 Identities=16% Similarity=0.196 Sum_probs=346.9
Q ss_pred HHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003433 143 GDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE 222 (820)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 222 (820)
..+++++.......+....+...+.+.|++.+|.+.....-+++....+ ..-.+..++.+..+++....--...++.
T Consensus 35 ~~v~qq~~~t~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~---~llll~ai~~q~~r~d~s~a~~~~a~r~ 111 (966)
T KOG4626|consen 35 SSVLQQFNKTHEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTE---RLLLLSAIFFQGSRLDKSSAGSLLAIRK 111 (966)
T ss_pred hHHHHHhccCCccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCccc---ceeeehhhhhcccchhhhhhhhhhhhhc
Confidence 3455665555555666777888889999999999988777666533222 3334566677778888777666666655
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003433 223 GYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITF 302 (820)
Q Consensus 223 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~ 302 (820)
. +.-..+|..+.+.+...|++++|+.+++.+.+...+ .+..|..+..++...| +.+.|.+.|.+.++. .|+....
T Consensus 112 ~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~-~~~~a~~~~~~alql--nP~l~ca 186 (966)
T KOG4626|consen 112 N-PQGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQG-DLELAVQCFFEALQL--NPDLYCA 186 (966)
T ss_pred c-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcC-CCcccHHHHHHHHhc--Ccchhhh
Confidence 3 235778999999999999999999999999985433 6778999999999999 999999999999885 5665544
Q ss_pred H-HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCC-HHHHHHHHHHHH
Q 003433 303 N-SLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN-VVTYSTMIDGYA 380 (820)
Q Consensus 303 ~-~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~ 380 (820)
. .+.......|++++|...|.+.++.. +--.+.|+.|...+-..|+...|++.|++..+.+ |+ ...|-.|...|.
T Consensus 187 ~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~k 263 (966)
T KOG4626|consen 187 RSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYK 263 (966)
T ss_pred hcchhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHH
Confidence 3 34445566899999999998888753 1235678888888888999999999999888763 43 457888888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003433 381 KAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRR 460 (820)
Q Consensus 381 ~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 460 (820)
..+.++.|+..+.+..... +-..+.+..|...|...|.+|.|+..|++.++.. +.-...|+.|..++-..|++.+|.+
T Consensus 264 e~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~ 341 (966)
T KOG4626|consen 264 EARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVD 341 (966)
T ss_pred HHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHH
Confidence 8888899888888877663 3345778888888888899999999998888764 3446788888888888899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003433 461 MFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGI 540 (820)
Q Consensus 461 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 540 (820)
.|.+.+... +-.....+.|...|...|++++|..+|....+..+. -...++.|...|-++|++++|+..|++.+. +
T Consensus 342 cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I 417 (966)
T KOG4626|consen 342 CYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--I 417 (966)
T ss_pred HHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--c
Confidence 888887762 334567788888888888888888888888775322 345678888888888888888888888887 5
Q ss_pred CCCHH-HHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccc
Q 003433 541 RPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKE 619 (820)
Q Consensus 541 ~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (820)
.|+.. .|+.+...|-..|++..|
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A-------------------------------------------------------- 441 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAA-------------------------------------------------------- 441 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHH--------------------------------------------------------
Confidence 77754 555555555555555444
Q ss_pred hhhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHH
Q 003433 620 NRCRQEILCILGVFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLL 686 (820)
Q Consensus 620 ~~~~~~~~~Al~~~~~m~~~~~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~ 686 (820)
++.+.+.+. ++|. ...++.|.++|-..|+..+|++.|+++++++|+......+++
T Consensus 442 ----------~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNll 497 (966)
T KOG4626|consen 442 ----------IQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLL 497 (966)
T ss_pred ----------HHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHH
Confidence 444554444 5554 345778888999999999999999999988887766655554
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=1e-22 Score=236.39 Aligned_cols=548 Identities=9% Similarity=0.003 Sum_probs=338.2
Q ss_pred CCcchHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHH
Q 003433 137 RDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIF 216 (820)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 216 (820)
..++++..+-..++..+.++..+..+.+.|.+.|++++|+..++++++.+ |.+...+..+ +..++.++|..+|
T Consensus 59 d~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld---P~n~~~~~~L----a~i~~~~kA~~~y 131 (987)
T PRK09782 59 DEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH---PGDARLERSL----AAIPVEVKSVTTV 131 (987)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---cccHHHHHHH----HHhccChhHHHHH
Confidence 33344444444455555556666667777777777777777777777663 3333333333 2226677777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHH--------HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHcCCCCHHHHHHHH
Q 003433 217 ETALNEGYGNTVYAFSALISA--------YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAV-IDACGKGGVDFKHVVEIF 287 (820)
Q Consensus 217 ~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~g~~~~~A~~~~ 287 (820)
+++.+..+. +..++..+... |.+.++..+|++ .......|+..+.... ...|.+.+ ++++|++++
T Consensus 132 e~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY~~l~-dw~~Ai~lL 205 (987)
T PRK09782 132 EELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATFAASPEGKTLRTDLLQRAIYLK-QWSQADTLY 205 (987)
T ss_pred HHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHHHHHh-CHHHHHHHH
Confidence 777665433 44555555554 555544344443 2222233334433333 66666677 777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC
Q 003433 288 DDMLRNGVQPDRITFNSLLAVCSR-GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNIS 366 (820)
Q Consensus 288 ~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 366 (820)
.++.+.+.. +..-...|..+|.. .++ +++..++.. .+..+...+..++..|.+.|+.++|.++++++......
T Consensus 206 ~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 206 NEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC
Confidence 777776543 34445555556665 355 666666443 22246666777777777777777777777776543222
Q ss_pred -CCHHHHHH------------------------------HHHHHHHcCCHHHHHHHHH----------------------
Q 003433 367 -PNVVTYST------------------------------MIDGYAKAGRLDDALNMFS---------------------- 393 (820)
Q Consensus 367 -p~~~~~~~------------------------------li~~~~~~g~~~~A~~~~~---------------------- 393 (820)
|+..+|.- ++..+.+.++++.+.++..
T Consensus 280 ~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 359 (987)
T PRK09782 280 DAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKA 359 (987)
T ss_pred CCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchh
Confidence 33333311 1333444444444433321
Q ss_pred -------HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCC---HHHHHHH
Q 003433 394 -------EMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS--GIRKDAVTYNALLGGYGKQGK---YDEVRRM 461 (820)
Q Consensus 394 -------~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~---~~~A~~~ 461 (820)
.|.+.. +-+....--+.-...+.|+.++|..+|+..... +...+....+-|+..|.+.+. ..++..+
T Consensus 360 ~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 438 (987)
T PRK09782 360 EALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL 438 (987)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh
Confidence 000000 001111122222334567777777777766541 112344455566677766655 2222222
Q ss_pred -------------------------HHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003433 462 -------------------------FEQMKADCVSP--NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSA 514 (820)
Q Consensus 462 -------------------------~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 514 (820)
+...... .++ +...|..+..++.. ++.++|+..|.+..... |+......
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~ 514 (987)
T PRK09782 439 SKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRA 514 (987)
T ss_pred ccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHH
Confidence 1111111 133 56677777777776 78888888777776653 55444444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhh
Q 003433 515 LIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEA 594 (820)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 594 (820)
+...+...|++++|+..|+++... .|+...+..+..++.+.|+.++|...+.+++...+....+
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l-------------- 578 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNAL-------------- 578 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHH--------------
Confidence 455556888888888888887653 4555566677777888888888888888887765443211
Q ss_pred ccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhc
Q 003433 595 GRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLF 674 (820)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~ 674 (820)
....... ....|++++|+..|++.++ +.|+...|..++.++.+.|++++|+..|++++..
T Consensus 579 ------~~~La~~------------l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l 638 (987)
T PRK09782 579 ------YWWLHAQ------------RYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL 638 (987)
T ss_pred ------HHHHHHH------------HHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 0000000 0112478899999999987 6788888999999999999999999999999999
Q ss_pred CCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhh
Q 003433 675 DNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVW 745 (820)
Q Consensus 675 ~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 745 (820)
+|++..+..++...+ ..|++++|+.+++++++.+|++ +..+..++++|...|++++|+..++++.+....
T Consensus 639 ~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~-~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 639 EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD-PALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 999998887776555 5789999999999999999965 778999999999999999999999998776543
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=8.2e-24 Score=216.32 Aligned_cols=451 Identities=14% Similarity=0.111 Sum_probs=264.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 003433 197 SAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKG 276 (820)
Q Consensus 197 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 276 (820)
..|..-..+.|++.+|++.-..+-.++. .+....-.+-..+.+..+++.....-....+... .-..+|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~-q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP-QGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhccc-hHHHHHHHHHHHHHHh
Confidence 4555666667777777665544433322 1233333444455555555554444333333211 1345666666666666
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 003433 277 GVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIF-TYNTLLDAICKGAQMDLAFE 355 (820)
Q Consensus 277 g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~ll~~~~~~g~~~~A~~ 355 (820)
| ++++|+.+|+.+++...+ ....|..+..++...|+.+.|.+.|.+.++. .|+.. ..+.+...+-..|++++|..
T Consensus 130 g-~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 130 G-QLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred c-hHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 6 666666666666665322 4555666666666666666666666666654 23332 22334444444566666666
Q ss_pred HHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003433 356 IMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI 435 (820)
Q Consensus 356 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 435 (820)
.|.+.++.... =.+.|+.|...+-.+|++..|+..|++.++.+ +.=...|..|...|...+.+++|...|.+.....
T Consensus 206 cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 206 CYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 66655554211 23456666666666666666666666665542 1123455556666666666666666665554432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003433 436 RKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPN-LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSA 514 (820)
Q Consensus 436 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 514 (820)
+...+.+..+...|...|.+|.|+..|++.++. .|+ ...|+.|..++-..|++.+|...|.+.+..... -....+.
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~N 359 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNN 359 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHH
Confidence 233455555555555666666666666665554 333 345555555555555555555555555554321 3344555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhh
Q 003433 515 LIDALCKNGLVESAVSLLDEMTKEGIRPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQE 593 (820)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 593 (820)
|...|...|++++|..+|....+ +.|+.. ..+.|...|-+.|
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqg----------------------------------- 402 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQG----------------------------------- 402 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcc-----------------------------------
Confidence 55555555555555555555554 334332 3444444444444
Q ss_pred hccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHh
Q 003433 594 AGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASMLLEELR 672 (820)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~~~~ 672 (820)
++++|+..+++.+. |+|+ ...|+.+++.|-..|++++|.+.+..+.
T Consensus 403 -------------------------------nl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 403 -------------------------------NLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred -------------------------------cHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 44456666776666 8887 4569999999999999999999999999
Q ss_pred hcCCchhHHHHHHHhccc-cchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchH
Q 003433 673 LFDNQVYGVAHGLLMGYR-DNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKR 730 (820)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 730 (820)
.++|.-.....++...++ .|+..+|+.-|+.+++++|+. +..|-.|...+--..+|.
T Consensus 450 ~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf-pdA~cNllh~lq~vcdw~ 507 (966)
T KOG4626|consen 450 QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF-PDAYCNLLHCLQIVCDWT 507 (966)
T ss_pred hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC-chhhhHHHHHHHHHhccc
Confidence 999987777778777775 799999999999999999965 444555555444333443
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=2.1e-21 Score=225.42 Aligned_cols=550 Identities=11% Similarity=0.017 Sum_probs=386.0
Q ss_pred HHHhccCCcchHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHH--------
Q 003433 131 HVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISI-------- 202 (820)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-------- 202 (820)
.+...++.+.+...+-+.+...+.+...+..+ ..+ +++++|+++|++++... |.+..++..+...
T Consensus 87 ~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i---~~~~kA~~~ye~l~~~~---P~n~~~~~~la~~~~~~~~l~ 159 (987)
T PRK09782 87 AYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI---PVEVKSVTTVEELLAQQ---KACDAVPTLRCRSEVGQNALR 159 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh---ccChhHHHHHHHHHHhC---CCChhHHHHHHHHhhccchhh
Confidence 34445555555555555565554333333333 222 89999999999999985 4444466556665
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-CCCCH
Q 003433 203 LGRLGKVDLAKNIFETALNEGYGNTVYAFSA-LISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGK-GGVDF 280 (820)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~~ 280 (820)
|.+. ++|.+.++ .......++..+... +...|.+.|++++|++++.++.+.++. +......|...|.+ .+ +
T Consensus 160 y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~-~- 232 (987)
T PRK09782 160 LAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQL-D- 232 (987)
T ss_pred hhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhC-H-
Confidence 6655 44554444 322223334444444 499999999999999999999997654 45556777778887 46 5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHH--H-------------------
Q 003433 281 KHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGID-QDIFTY--N------------------- 338 (820)
Q Consensus 281 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~--~------------------- 338 (820)
+.+..+++.. ++-+...+..++..|.+.|+.++|.++++++...-.. |...+| +
T Consensus 233 ~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~ 308 (987)
T PRK09782 233 DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQF 308 (987)
T ss_pred HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhh
Confidence 7888886542 3358889999999999999999999999998765322 333333 2
Q ss_pred ---------HHHHHHHhcCCHHHHHHHHHHchhC--------CC--------------------CCCHHHHHHHHHHHHH
Q 003433 339 ---------TLLDAICKGAQMDLAFEIMAEMPAK--------NI--------------------SPNVVTYSTMIDGYAK 381 (820)
Q Consensus 339 ---------~ll~~~~~~g~~~~A~~~~~~m~~~--------g~--------------------~p~~~~~~~li~~~~~ 381 (820)
.++..+.+.++++.++++.+.-... +. .-+......+.....+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~ 388 (987)
T PRK09782 309 ADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQ 388 (987)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 1245556667777666554311100 00 0122333333444567
Q ss_pred cCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCC---HHHHHHH-------------------------HHHHH
Q 003433 382 AGRLDDALNMFSEMKFL--GIGLDRVSYNTVLSIYAKLGR---FEEALLV-------------------------CKEME 431 (820)
Q Consensus 382 ~g~~~~A~~~~~~m~~~--~~~~d~~~~~~li~~~~~~g~---~~~A~~~-------------------------~~~~~ 431 (820)
.|+.++|..+|+..... +...+.....-|+..|.+.+. ..++..+ +....
T Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 468 (987)
T PRK09782 389 NGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL 468 (987)
T ss_pred cccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc
Confidence 89999999999998763 123345556678888877766 3333222 11122
Q ss_pred HCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003433 432 SSGIRK--DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADV 509 (820)
Q Consensus 432 ~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 509 (820)
... +. +...|..+..++.. ++.++|...|.+.... .|+......+...+...|++++|...|+++... .|+.
T Consensus 469 ~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~ 542 (987)
T PRK09782 469 GDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSN 542 (987)
T ss_pred ccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCc
Confidence 111 34 67788888888877 8999999988888765 466555445566667899999999999998664 3455
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCc
Q 003433 510 VLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDD 588 (820)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 588 (820)
..+..+..++.+.|+.++|...|++.++.. |+.. .+..+...+.+.|++++|+..++++++..|..
T Consensus 543 ~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~----------- 609 (987)
T PRK09782 543 EDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSA----------- 609 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCH-----------
Confidence 567778889999999999999999999863 4443 44444455567799999999999999887742
Q ss_pred hhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHH
Q 003433 589 KDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASML 667 (820)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd-~~~~~~ll~a~~~~g~~~eA~~~ 667 (820)
..+..+..++.+ .++.++|+..|++.+. ..|+ ...+..++.++...|++++|+++
T Consensus 610 -------~a~~~LA~~l~~---------------lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 610 -------NAYVARATIYRQ---------------RHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred -------HHHHHHHHHHHH---------------CCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 112223333332 2478899999999998 6675 55688899999999999999999
Q ss_pred HHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhh
Q 003433 668 LEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (820)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (820)
|+++++.+|++..+..++...+ ..|++++|+..++++++++|+. ..+....++++.+..+++.|.+-+..+...
T Consensus 666 l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~-a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 666 LERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ-ALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-chhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999998888887766 6899999999999999999965 677999999999999999999877655433
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.3e-21 Score=209.42 Aligned_cols=558 Identities=14% Similarity=0.107 Sum_probs=404.2
Q ss_pred hHHHHHHHH--HcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003433 158 DYTFLLREL--GNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (820)
Q Consensus 158 ~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 235 (820)
....+.+++ ...++|..|+.+|..++...+....+ ....+..++.++|+.+.|+..|..++..++ .++.++..|.
T Consensus 164 il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD--~rIgig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~ 240 (1018)
T KOG2002|consen 164 ILALLGKARIAYNKKDYRGALKYYKKALRINPACKAD--VRIGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALG 240 (1018)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCC--ccchhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHH
Confidence 444455554 46789999999999999887666655 334677888999999999999999998754 2455554444
Q ss_pred HHHHhc---CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHH
Q 003433 236 SAYGRS---GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQ--PDRITFNSLLAVCS 310 (820)
Q Consensus 236 ~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~ 310 (820)
-.-... ..+..++.++...-..... |.+..+.|.+.|.-.| ++..+..+...+...... .-...|..+.++|.
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~-dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H 318 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKK-DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH 318 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcc-cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 433333 3455677777776654332 6778888888888888 999999999999875321 12345888999999
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcC----CHH
Q 003433 311 RGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAG----RLD 386 (820)
Q Consensus 311 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~ 386 (820)
..|++++|..+|.+..+..-..-+..+-.|..+|.+.|+++.+...|+++.+... -+..+...|...|...+ ..+
T Consensus 319 a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d 397 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRD 397 (1018)
T ss_pred hhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHH
Confidence 9999999999999888764222245566789999999999999999999988643 26678888888888775 568
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003433 387 DALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEM----ESSGIRKDAVTYNALLGGYGKQGKYDEVRRMF 462 (820)
Q Consensus 387 ~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 462 (820)
+|..++.+..+.. +.|...|..+...+....-+. ++.+|..+ ...+..+.+...|.+...+...|++++|...|
T Consensus 398 ~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f 475 (1018)
T KOG2002|consen 398 KASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHF 475 (1018)
T ss_pred HHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHH
Confidence 8888888877764 567788888887776554443 36666543 44555678899999999999999999999999
Q ss_pred HHHHHC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHH
Q 003433 463 EQMKAD---CVSPNL------LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADV-VLYSALIDALCKNGLVESAVSLL 532 (820)
Q Consensus 463 ~~m~~~---~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~ 532 (820)
...... ...+|. .+--.+...+-..++++.|.++|..+++.. |.. ..|-.++......+...+|...+
T Consensus 476 ~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~l 553 (1018)
T KOG2002|consen 476 KSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLL 553 (1018)
T ss_pred HHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHH
Confidence 988765 122333 233346667777889999999999998864 443 33444443344457789999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHH
Q 003433 533 DEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEK 612 (820)
Q Consensus 533 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (820)
++.+..+ .-+...+..+.+.+.+...+..|.+-++..+.......+.+.++..| +.|-+- .
T Consensus 554 k~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLG---------------N~~~~~---l 614 (1018)
T KOG2002|consen 554 KDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALG---------------NVYIQA---L 614 (1018)
T ss_pred HHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhh---------------HHHHHH---h
Confidence 9998752 44666777777788888888777775555554433322222222221 211110 0
Q ss_pred hcCCccchhhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-c
Q 003433 613 AGQGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-R 690 (820)
Q Consensus 613 ~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~ 690 (820)
...........+++++|+++|.+.+. ..| |...-+.++-.++..|++.+|+.+|.++++.-.+...++.++...| .
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVE 692 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHH
Confidence 11111123456789999999999998 455 7777889999999999999999999999865444455555555444 6
Q ss_pred cchHHHHHHHHHHHhh-cCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhhh
Q 003433 691 DNIWVQALSLFDEVKL-MDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWE 746 (820)
Q Consensus 691 ~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 746 (820)
.|.|..|+++|+.+++ ..++++..+..+|+.++++.|++.+|.+....++...+.+
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~ 749 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSN 749 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCcc
Confidence 8999999999999876 4566778999999999999999999999988887665544
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=4.6e-20 Score=211.34 Aligned_cols=428 Identities=11% Similarity=0.025 Sum_probs=250.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003433 195 LASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG 274 (820)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 274 (820)
.+...+..+.+.|++++|+..|+++++. .|+...|..+..+|.+.|++++|++.++..++.... +...|..+..++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 4556666777777777777777777654 345556666666677777777777777666653321 4455666666666
Q ss_pred cCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003433 275 KGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAF 354 (820)
Q Consensus 275 ~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 354 (820)
..| ++++|+..|..+...+...+.. ...++..+.. ..+........+.
T Consensus 206 ~lg-~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~-------------------------- 253 (615)
T TIGR00990 206 GLG-KYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILET-------------------------- 253 (615)
T ss_pred HcC-CHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhc--------------------------
Confidence 666 6666666665544332111111 1111111100 1111111111111
Q ss_pred HHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH---HHHcCCHHHHHHHHHHH
Q 003433 355 EIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD-RVSYNTVLSI---YAKLGRFEEALLVCKEM 430 (820)
Q Consensus 355 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d-~~~~~~li~~---~~~~g~~~~A~~~~~~~ 430 (820)
-. .+...+..+.. |......+....-+.+..+. .++ ...+..+... ....+++++|.+.|++.
T Consensus 254 -----~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~a 320 (615)
T TIGR00990 254 -----KP-----ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKA 320 (615)
T ss_pred -----CC-----CCCCCHHHHHH-HHHHccCCcchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 11 01111111111 11111111111111111100 000 0001111111 12345677777777777
Q ss_pred HHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003433 431 ESSG--IRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD 508 (820)
Q Consensus 431 ~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 508 (820)
.+.+ .+.+...|+.+...+...|++++|+..|++.++.. +-+...|..+...+...|++++|...|+++++.... +
T Consensus 321 l~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~ 398 (615)
T TIGR00990 321 LDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-D 398 (615)
T ss_pred HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-C
Confidence 7653 12344567777777777888888888888877652 223557777777777888888888888887776533 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccC
Q 003433 509 VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQD 587 (820)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 587 (820)
...|..++..+...|++++|+..|++.++. .|+ ...+..+..++.+.|++++|+.
T Consensus 399 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~---------------------- 454 (615)
T TIGR00990 399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMA---------------------- 454 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHH----------------------
Confidence 677777888888888888888888888774 344 3455556666666665555444
Q ss_pred chhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHH
Q 003433 588 DKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASM 666 (820)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~ 666 (820)
.|++.+. ..| +...+..++.++...|++++|++
T Consensus 455 --------------------------------------------~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 455 --------------------------------------------TFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred --------------------------------------------HHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHH
Confidence 4444443 334 35567778888888899999999
Q ss_pred HHHHHhhcCCchhHHHHHH-------Hhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHH
Q 003433 667 LLEELRLFDNQVYGVAHGL-------LMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLE 738 (820)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 738 (820)
.|++++..+|.......+. +..+ ..+++++|+.+++++++++|++ ...+..|+++|.+.|++++|.+++++
T Consensus 489 ~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~-~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 489 KFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC-DIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999888776543221111 1112 2589999999999999999965 56799999999999999999999998
Q ss_pred hhhhh
Q 003433 739 GKRRQ 743 (820)
Q Consensus 739 ~~~~~ 743 (820)
+.+..
T Consensus 568 A~~l~ 572 (615)
T TIGR00990 568 AAELA 572 (615)
T ss_pred HHHHh
Confidence 86653
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=1.5e-18 Score=198.92 Aligned_cols=440 Identities=13% Similarity=0.043 Sum_probs=230.4
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (820)
..+......+.+.|++++|+..|++++...+ + ...|..+..+|.+.|++++|+..++.+++.++ .+..+|..+..
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p---~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~ 202 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKP---D-PVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---c-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 3456688889999999999999999998753 2 45788999999999999999999999998753 36889999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 003433 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (820)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 316 (820)
+|...|++++|+..|..+...+...+.. ...++..+.. ..+........+.... +...+..+.. +......+
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~-----~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~ 274 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK-----KFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPK 274 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH-----HHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCC
Confidence 9999999999999998776543221222 1222221111 2233333333332111 1112222222 21111111
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHH---HhcCCHHHHHHHHHHchhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 003433 317 AARNLFNEMVHRGIDQD-IFTYNTLLDAI---CKGAQMDLAFEIMAEMPAKN-ISP-NVVTYSTMIDGYAKAGRLDDALN 390 (820)
Q Consensus 317 ~A~~~~~~~~~~g~~~~-~~~~~~ll~~~---~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~ 390 (820)
....-+....+. .+. ...+..+...+ ...+++++|++.|++..+.+ ..| +...|..+...+...|++++|+.
T Consensus 275 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~ 352 (615)
T TIGR00990 275 PRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALA 352 (615)
T ss_pred cchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 111111111110 010 00011111000 12244555555555555432 111 22344444455555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003433 391 MFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCV 470 (820)
Q Consensus 391 ~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 470 (820)
.|++..+.. +-+...|..+...+...|++++|+..|+++++.. +.+..+|..+...|...|++++|...|++.++..
T Consensus 353 ~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~- 429 (615)
T TIGR00990 353 DLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD- 429 (615)
T ss_pred HHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 555554442 2223344444555555555555555555544433 3334444445555555555555555555544432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003433 471 SPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSI 550 (820)
Q Consensus 471 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 550 (820)
+.+...+..+..++.+.|++++|+..|++.++..+ .+...|+.+...+...|++++|++.|++
T Consensus 430 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~---------------- 492 (615)
T TIGR00990 430 PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDT---------------- 492 (615)
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHH----------------
Confidence 22333444444444444555555555544444321 1344444444444444444444444444
Q ss_pred HHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHH
Q 003433 551 IDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCIL 630 (820)
Q Consensus 551 l~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al 630 (820)
+++..+......... . ..++.....|. ..+++++|+
T Consensus 493 -------------------Al~l~p~~~~~~~~~----~------~l~~~a~~~~~---------------~~~~~~eA~ 528 (615)
T TIGR00990 493 -------------------AIELEKETKPMYMNV----L------PLINKALALFQ---------------WKQDFIEAE 528 (615)
T ss_pred -------------------HHhcCCccccccccH----H------HHHHHHHHHHH---------------HhhhHHHHH
Confidence 444433211000000 0 00000011111 123778899
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCc
Q 003433 631 GVFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFDNQ 677 (820)
Q Consensus 631 ~~~~~m~~~~~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~ 677 (820)
.++++.+. +.|+ ..++..++.++.+.|++++|.++|+++.++...
T Consensus 529 ~~~~kAl~--l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 529 NLCEKALI--IDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHh--cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 99999887 4565 456889999999999999999999998866554
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.90 E-value=7.6e-19 Score=190.20 Aligned_cols=544 Identities=13% Similarity=0.091 Sum_probs=384.9
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCHHH
Q 003433 154 CGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRL---GKVDLAKNIFETALNEGYGNTVYA 230 (820)
Q Consensus 154 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~ 230 (820)
+.+|....+...+.+.++.+.|+..|.++++.++ ..+.++..|...-... ..+..|..++..+-..+. .|+++
T Consensus 197 ~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp---~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~ 272 (1018)
T KOG2002|consen 197 CKADVRIGIGHCFWKLGMSEKALLAFERALQLDP---TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVA 272 (1018)
T ss_pred cCCCccchhhhHHHhccchhhHHHHHHHHHhcCh---hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHH
Confidence 4566777777888999999999999999999863 4444444444433333 345667777777766543 47889
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 231 FSALISAYGRSGYCQEAISVFNSMKRYNLKP--NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAV 308 (820)
Q Consensus 231 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 308 (820)
.+.|.+.|.-.|++..+..+...+......- -...|..+.++|-..| ++++|..+|.+..+....-.+..+..|...
T Consensus 273 l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G-d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm 351 (1018)
T KOG2002|consen 273 LNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG-DFEKAFKYYMESLKADNDNFVLPLVGLGQM 351 (1018)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHccCCCCccccccchhHH
Confidence 9999999999999999999999998643211 2345778899999999 999999999998876333224556678889
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCC
Q 003433 309 CSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGA----QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR 384 (820)
Q Consensus 309 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 384 (820)
|.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+..+.-+ .|...|-.+...|....-
T Consensus 352 ~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~-~d~~a~l~laql~e~~d~ 429 (1018)
T KOG2002|consen 352 YIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTP-VDSEAWLELAQLLEQTDP 429 (1018)
T ss_pred HHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHhcCh
Confidence 999999999999999999863 456778888888888775 67888888888877643 377788887777766554
Q ss_pred HHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHh
Q 003433 385 LDDALNMFSEMK----FLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS---GIRKDA------VTYNALLGGYGK 451 (820)
Q Consensus 385 ~~~A~~~~~~m~----~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~li~~~~~ 451 (820)
+.. +..|..+. ..+..+-....|.+...+...|++++|...|+..... ...+|. .+-..+...+-.
T Consensus 430 ~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~ 508 (1018)
T KOG2002|consen 430 WAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEE 508 (1018)
T ss_pred HHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHh
Confidence 443 77766543 4555678899999999999999999999999987654 112232 233346777788
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003433 452 QGKYDEVRRMFEQMKADCVSPN-LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVS 530 (820)
Q Consensus 452 ~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 530 (820)
.++.+.|.++|..++.. .|+ +..|..++.+....++..+|...++...+.+- -++..+..++..+.+...+..|.+
T Consensus 509 l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k 585 (1018)
T KOG2002|consen 509 LHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKK 585 (1018)
T ss_pred hhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhccccc
Confidence 89999999999999887 355 34566666555566889999999999987653 477788888889999999999999
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHhh------------cCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccc
Q 003433 531 LLDEMTKE-GIRPNVVTYNSIIDAFGR------------SATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRT 597 (820)
Q Consensus 531 ~~~~m~~~-g~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (820)
-|+...+. ...+|..+..+|.+.|.+ .+..++|++.|.++|...|.+. ..
T Consensus 586 ~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~-----------------yA 648 (1018)
T KOG2002|consen 586 KFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNM-----------------YA 648 (1018)
T ss_pred HHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchh-----------------hh
Confidence 77777654 223677777788876632 3445667777777777766542 12
Q ss_pred hHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh-cC-
Q 003433 598 DNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRL-FD- 675 (820)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~-~~- 675 (820)
.|++.-.++ ..+.+.+|+.+|.+..+... -+..+|..|+..|.-+|++-.|+++|+.... ..
T Consensus 649 ANGIgiVLA---------------~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~ 712 (1018)
T KOG2002|consen 649 ANGIGIVLA---------------EKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYK 712 (1018)
T ss_pred ccchhhhhh---------------hccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 222222222 22356678888888776443 1344567888888888888888888887653 22
Q ss_pred CchhHHHHHHHhc-cccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHH-------------------hhcCchHHHHHH
Q 003433 676 NQVYGVAHGLLMG-YRDNIWVQALSLFDEVKLMDSSTASAFYNALTDML-------------------WHFGQKRGAQLV 735 (820)
Q Consensus 676 ~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-------------------~~~g~~~~A~~~ 735 (820)
.++..+++.+.-. |+.|.|.+|.....++....|.+... ...++-++ ...+..++|.++
T Consensus 713 ~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v-~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~ 791 (1018)
T KOG2002|consen 713 KNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSV-KFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRL 791 (1018)
T ss_pred cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchH-HhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 2344555444333 35677888888888888877765433 33333332 333556677777
Q ss_pred HHHhhhh
Q 003433 736 VLEGKRR 742 (820)
Q Consensus 736 ~~~~~~~ 742 (820)
|..+...
T Consensus 792 F~~ls~~ 798 (1018)
T KOG2002|consen 792 FTELSKN 798 (1018)
T ss_pred HHHHHhc
Confidence 7665433
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=3.3e-20 Score=201.91 Aligned_cols=309 Identities=14% Similarity=0.142 Sum_probs=202.1
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhCCC
Q 003433 238 YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPD---RITFNSLLAVCSRGGL 314 (820)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~ 314 (820)
+...|++++|+..|+++.+.+.. +..++..+...+...| ++++|..+++.++..+..++ ..++..++..|.+.|+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRG-EVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcC-cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34445555555555555443211 2334444444555555 55555555555544321111 1345555666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCC----HHHHHHHHHHHHHcCCHHHHHH
Q 003433 315 WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN----VVTYSTMIDGYAKAGRLDDALN 390 (820)
Q Consensus 315 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~ 390 (820)
+++|+.+|+++.+.. +.+..+++.++..+.+.|++++|++.++++.+.+..++ ...+..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 666666666666542 23455666666666666666666666666665433221 1234556667777888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003433 391 MFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCV 470 (820)
Q Consensus 391 ~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 470 (820)
.|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|.+.|++++|...++++.+.
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 888877653 33456677777888888888888888888876542222456778888888999999999999888876
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003433 471 SPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK---NGLVESAVSLLDEMTKEGIRPNVVTY 547 (820)
Q Consensus 471 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~ 547 (820)
.|+...+..++..+.+.|++++|..+|+++.+. .|+..+++.++..++. .|+.++++.++++|.+.++.|+..
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-- 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR-- 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC--
Confidence 466666788888899999999999999888775 4788888888877775 558889999999998876666655
Q ss_pred HHHHHHHhhcCch
Q 003433 548 NSIIDAFGRSATT 560 (820)
Q Consensus 548 ~~ll~~~~~~g~~ 560 (820)
..|.++|-.
T Consensus 355 ----~~c~~cg~~ 363 (389)
T PRK11788 355 ----YRCRNCGFT 363 (389)
T ss_pred ----EECCCCCCC
Confidence 346666644
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=6.7e-20 Score=199.52 Aligned_cols=301 Identities=17% Similarity=0.153 Sum_probs=177.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCC
Q 003433 202 ILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPN---LVTYNAVIDACGKGGV 278 (820)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~ 278 (820)
.+...|++++|...|+++.+.++ .+..++..++..+...|++++|+.+++.+...+..++ ...+..+...+.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g- 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG- 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC-
Confidence 34455555556666665555432 2444555555555666666666666655554321111 134555555566666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHH
Q 003433 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQD----IFTYNTLLDAICKGAQMDLAF 354 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~ll~~~~~~g~~~~A~ 354 (820)
++++|..+|+++.+.. ..+..++..++.++.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|+
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 5666666666665432 22445566666666666666666666666655432211 123445566666677777777
Q ss_pred HHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003433 355 EIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSG 434 (820)
Q Consensus 355 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 434 (820)
.+|+++.+... .+...+..+...|.+.|++++|+++|+++.+.+......+++.++.+|.+.|++++|...++++.+..
T Consensus 201 ~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 77776665432 13455666667777777777777777776655311123456667777777777777777777776543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHH
Q 003433 435 IRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK---GGLYKEAMQIFREFKQAGLKADVV 510 (820)
Q Consensus 435 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~ 510 (820)
|+...+..++..+.+.|++++|..+|+++.+. .|+..+++.++..+.. .|+.+++..+|++|.+.++.+++.
T Consensus 280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 44455566777777777777777777776664 5677777766666554 446777777777777655555444
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=9.7e-19 Score=199.49 Aligned_cols=329 Identities=11% Similarity=0.003 Sum_probs=163.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 003433 199 MISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGV 278 (820)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 278 (820)
++..+.+.|++++|..+++.++...+. +...+..++......|++++|+..|+++.+..+. +...+..+...+.+.|
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g- 124 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSK- 124 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcC-
Confidence 344445555555555555555544222 3344444444445555555555555555543221 3344444455555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003433 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMA 358 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 358 (820)
++++|+..|+++++.... +...+..++..+...|++++|...++.+...... +...+..+ ..+.+.|++++|+.+++
T Consensus 125 ~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 125 QYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 555555555555543211 3444455555555555555555555555443211 22222222 22445555555555555
Q ss_pred HchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHCC
Q 003433 359 EMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEE----ALLVCKEMESSG 434 (820)
Q Consensus 359 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~ 434 (820)
.+.+....++...+..+...+.+.|++++|+..++++.+.. +.+...+..+...|.+.|++++ |+..|+++.+..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 55443222233333344445555555555555555555443 3344455555555555555553 555555555443
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003433 435 IRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSA 514 (820)
Q Consensus 435 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 514 (820)
+.+...+..+...+.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|...|+++.+.++. +...+..
T Consensus 281 -P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~ 357 (656)
T PRK15174 281 -SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRY 357 (656)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHH
Confidence 3345555555556666666666666666555542 223444555555555666666666666655554321 1222233
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 003433 515 LIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
+..++...|+.++|+..|+++.+
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455556666666666666554
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=2.8e-18 Score=195.68 Aligned_cols=335 Identities=9% Similarity=0.002 Sum_probs=277.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003433 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (820)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 237 (820)
....++..+.+.|++++|+.+++..+...+ ....++..++.++...|++++|...|+++....+ .+...+..+...
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p---~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~ 119 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAK---NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASV 119 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCC---CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHH
Confidence 345577888999999999999999998853 3344667777888899999999999999998754 378889999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 003433 238 YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEA 317 (820)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 317 (820)
+.+.|++++|++.|+++.+.... +...+..+...+...| ++++|...++.+...... +...+..+ ..+...|++++
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g-~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~e 195 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMD-KELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPE 195 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHH
Confidence 99999999999999999975322 5678888899999999 999999999998876443 33334333 34788999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHH
Q 003433 318 ARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDD----ALNMFS 393 (820)
Q Consensus 318 A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----A~~~~~ 393 (820)
|..+++.+++.....+...+..+...+.+.|++++|+..|+++...... +...+..+...|...|++++ |+..|+
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 9999999988643344555666778899999999999999999987543 67788889999999999986 899999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003433 394 EMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPN 473 (820)
Q Consensus 394 ~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 473 (820)
+..+.. +.+...+..+...+.+.|++++|+..+++..+.. +.+...+..+..+|.+.|++++|...|+++... .|+
T Consensus 275 ~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~ 350 (656)
T PRK15174 275 HALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGV 350 (656)
T ss_pred HHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc
Confidence 998874 4567789999999999999999999999998875 556778888999999999999999999999876 355
Q ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003433 474 L-LTYSTLIDVYSKGGLYKEAMQIFREFKQAGL 505 (820)
Q Consensus 474 ~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 505 (820)
. ..+..+..++...|+.++|...|++..+..+
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 4 3344567788999999999999999988643
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=7.8e-18 Score=196.41 Aligned_cols=412 Identities=13% Similarity=0.026 Sum_probs=307.4
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003433 153 LCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFS 232 (820)
Q Consensus 153 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 232 (820)
..++......+......|+.++|+++|..+.... +....++..++.++...|++++|..+|+++++.. +.+...+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~---~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~ 87 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM---QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQR 87 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 3455566667777888999999999999887642 3444568889999999999999999999998864 33677888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 003433 233 ALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG 312 (820)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 312 (820)
.++.++...|++++|+..++++.+.... +.. +..+...+...| +.++|+..++++++.... +...+..+..++...
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g-~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~ 163 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAG-RHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHC
Confidence 8999999999999999999999875322 455 888888888899 999999999999987444 556666778888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHchhC-CCCCCHH-HH----
Q 003433 313 GLWEAARNLFNEMVHRGIDQDI------FTYNTLLDAIC-----KGAQM---DLAFEIMAEMPAK-NISPNVV-TY---- 372 (820)
Q Consensus 313 g~~~~A~~~~~~~~~~g~~~~~------~~~~~ll~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-~~---- 372 (820)
|..+.|++.++.+.. .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .+
T Consensus 164 ~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~ 240 (765)
T PRK10049 164 RLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRAR 240 (765)
T ss_pred CChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHH
Confidence 999999988876654 1221 11222233222 22334 7788888888753 1122221 11
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHH
Q 003433 373 STMIDGYAKAGRLDDALNMFSEMKFLGIG-LDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKD----AVTYNALLG 447 (820)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~ 447 (820)
...+..+...|++++|+..|+++.+.+.. |+. ....+..+|...|++++|+.+|+++.+.. +.+ ...+..+..
T Consensus 241 ~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~~~~~~L~~ 318 (765)
T PRK10049 241 IDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP-ETIADLSDEELADLFY 318 (765)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC-CCCCCCChHHHHHHHH
Confidence 11134456779999999999999887522 322 22335778999999999999999987643 111 345666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC-----------CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003433 448 GYGKQGKYDEVRRMFEQMKADC-----------VSPN---LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYS 513 (820)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~~-----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 513 (820)
++.+.|++++|..+++.+.+.. ..|+ ...+..+...+...|++++|+++++++....+. +...+.
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~ 397 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRI 397 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 8899999999999999988752 1123 234566778888999999999999999887644 688889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhh
Q 003433 514 ALIDALCKNGLVESAVSLLDEMTKEGIRPNV-VTYNSIIDAFGRSATTECTVDDVERDLGKQKESANL 580 (820)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~ 580 (820)
.++..+...|++++|++.+++.++. .||. ..+..++..+.+.|++++|...++++++..|++..+
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999999999999999884 5664 466777778889999999999999999998887644
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=2.1e-17 Score=192.88 Aligned_cols=406 Identities=12% Similarity=0.062 Sum_probs=213.9
Q ss_pred HcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003433 274 GKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLA 353 (820)
Q Consensus 274 ~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A 353 (820)
...| +.++|++++.+..... ..+...+..+...+.+.|++++|..+|++.++.. +.+...+..++.++...|++++|
T Consensus 26 ~~~g-~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA 102 (765)
T PRK10049 26 LWAG-QDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEA 102 (765)
T ss_pred HHcC-CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3344 4455555554444311 2233334444444555555555555555544431 22233444444445555555555
Q ss_pred HHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 354 FEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS 433 (820)
Q Consensus 354 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 433 (820)
+..++++.+.... +.. +..+..++...|+.++|+..++++.+.. +-+...+..+..++...|..++|+..++.+..
T Consensus 103 ~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~- 178 (765)
T PRK10049 103 LVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL- 178 (765)
T ss_pred HHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-
Confidence 5555554443211 223 4444445555555555555555554442 22333333444444444555555554443332
Q ss_pred CCCCCH------HHHHHHHHHH-----HhcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHhcCCHHHH
Q 003433 434 GIRKDA------VTYNALLGGY-----GKQGKY---DEVRRMFEQMKAD-CVSPNLL-TY----STLIDVYSKGGLYKEA 493 (820)
Q Consensus 434 ~~~~~~------~~~~~li~~~-----~~~g~~---~~A~~~~~~m~~~-~~~p~~~-~~----~~li~~~~~~g~~~~A 493 (820)
.|+. .....++..+ ...+++ ++|++.++.+.+. ...|+.. .+ ...+..+...|++++|
T Consensus 179 --~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA 256 (765)
T PRK10049 179 --TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDV 256 (765)
T ss_pred --CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 1110 0111111111 122233 6677777777643 1122211 11 1112334456788888
Q ss_pred HHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhhcCchhhhHHhHHH
Q 003433 494 MQIFREFKQAGLK-ADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRP---NVVTYNSIIDAFGRSATTECTVDDVER 569 (820)
Q Consensus 494 ~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~ 569 (820)
+..|+.+.+.+.. |+. ....+..+|...|++++|+.+|+++.+..... ....+..|..++.+.|++++|+..+++
T Consensus 257 ~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~ 335 (765)
T PRK10049 257 ISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAH 335 (765)
T ss_pred HHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 8888887776532 222 11224667788888888888888876542111 123455566667777777777776666
Q ss_pred HhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCCH---H
Q 003433 570 DLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNV---V 646 (820)
Q Consensus 570 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~---~ 646 (820)
+....|....+ +. ...-.||. .
T Consensus 336 ~~~~~P~~~~~----------------------------------------------------~~---~~~~~p~~~~~~ 360 (765)
T PRK10049 336 TINNSPPFLRL----------------------------------------------------YG---SPTSIPNDDWLQ 360 (765)
T ss_pred HhhcCCceEee----------------------------------------------------cC---CCCCCCCchHHH
Confidence 55544432100 00 00012332 2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhh
Q 003433 647 TFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWH 725 (820)
Q Consensus 647 ~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 725 (820)
.+..++.++...|++++|++++++++...|.+..+...+...+ ..|+.++|++.++++++++|++ ...+..++.++.+
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~-~~l~~~~a~~al~ 439 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRN-INLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHH
Confidence 3455666777778888888888888877777766666555544 4677788888888888888854 5567777778888
Q ss_pred cCchHHHHHHHHHhhhhhhh
Q 003433 726 FGQKRGAQLVVLEGKRRQVW 745 (820)
Q Consensus 726 ~g~~~~A~~~~~~~~~~~~~ 745 (820)
.|++++|+++++.+.++...
T Consensus 440 ~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 440 LQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred hCCHHHHHHHHHHHHHhCCC
Confidence 88888888888777665443
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=1e-15 Score=174.80 Aligned_cols=436 Identities=11% Similarity=0.059 Sum_probs=290.9
Q ss_pred HhccCCcchHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHH
Q 003433 133 TAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLA 212 (820)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 212 (820)
...+....++..+.+.....+..+-....++..+...|+.++|+..+++++.. .+........++..+...|++++|
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p---~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS---MNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC---CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 33444444444444444444433222226666666777777777777777622 122223333445677777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003433 213 KNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLR 292 (820)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~ 292 (820)
+++|+++++..+. +..++..++..|...++.++|++.++++... .|+...+..++..+...+ +..+|++.++++++
T Consensus 122 iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~-~~~~AL~~~ekll~ 197 (822)
T PRK14574 122 LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATD-RNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcc-hHHHHHHHHHHHHH
Confidence 7777777776543 4666667777777777777777777777653 355555533333333344 44457777777777
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH------HHHHHHH-----HhcCC---HHHHHHHHH
Q 003433 293 NGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTY------NTLLDAI-----CKGAQ---MDLAFEIMA 358 (820)
Q Consensus 293 ~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~------~~ll~~~-----~~~g~---~~~A~~~~~ 358 (820)
.... +...+..+..++.+.|-...|.++..+-.+. +.+....+ ..+++.- ....+ .+.|+.-++
T Consensus 198 ~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 198 LAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred hCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 6322 5566666777777777777777665543321 11111000 0111000 01112 344555555
Q ss_pred HchhC-CCCCCH-HHH----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 359 EMPAK-NISPNV-VTY----STMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMES 432 (820)
Q Consensus 359 ~m~~~-g~~p~~-~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 432 (820)
.+... +..|.. ..| .-.+-++...|++.++++.|+.|...+.+.-..+-..+.++|...++.++|+.+|+.+..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 55442 111321 112 234567788999999999999999888665667888999999999999999999999865
Q ss_pred CC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------------CCCCH-HHHHHHHHHHHhcCCHHHH
Q 003433 433 SG-----IRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC-------------VSPNL-LTYSTLIDVYSKGGLYKEA 493 (820)
Q Consensus 433 ~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------~~p~~-~~~~~li~~~~~~g~~~~A 493 (820)
.. ..++......|..+|...+++++|..+++++.+.. ..||- ..+..++..+...|++.+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 43 12344556789999999999999999999998731 11222 2334567778899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhcCchhhhHHhHHHHhh
Q 003433 494 MQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNV-VTYNSIIDAFGRSATTECTVDDVERDLG 572 (820)
Q Consensus 494 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~l~ 572 (820)
.+.++++....+. |...+..+.+.+...|.+.+|+..++.+... .|+. .+....+.++...|++++|..+....++
T Consensus 436 e~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 436 QKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 9999999887754 8999999999999999999999999777664 5554 4777888889999999999999999999
Q ss_pred hhhhhhhh
Q 003433 573 KQKESANL 580 (820)
Q Consensus 573 ~~~~~~~~ 580 (820)
..|+...+
T Consensus 513 ~~Pe~~~~ 520 (822)
T PRK14574 513 RSPEDIPS 520 (822)
T ss_pred hCCCchhH
Confidence 99988644
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=3.9e-15 Score=170.05 Aligned_cols=472 Identities=13% Similarity=0.093 Sum_probs=274.2
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003433 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (820)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 234 (820)
.++....-+-...+.|+++.|++.|+++++..+..+ ..++ .++..++..|+.++|+.++++..... .........+
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~--~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llal 108 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQS--GQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASA 108 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccch--hhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHH
Confidence 344444445556677888888888888777642221 1122 66777777788888888888777321 2234444445
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 003433 235 ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL 314 (820)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 314 (820)
+..|...|++++|+++|+++.+.... +...+..++..+.+.+ +.++|++.++++... .|+...+..++..+...++
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~-q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~ 184 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAG-RGGVVLKQATELAER--DPTVQNYMTLSYLNRATDR 184 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcC-CHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcch
Confidence 66777778888888888888775433 4555556666777777 777888877777765 4455555444444444555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003433 315 WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSE 394 (820)
Q Consensus 315 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 394 (820)
..+|++.++++.+.. +.+...+..++..+.+.|-...|+++.++-... + +...+.- + +.+.|.+..+-
T Consensus 185 ~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f--~~~~~~~-l-------~~~~~a~~vr~ 252 (822)
T PRK14574 185 NYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-V--SAEHYRQ-L-------ERDAAAEQVRM 252 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-c--CHHHHHH-H-------HHHHHHHHHhh
Confidence 655777777777764 345666677777777777777777776654322 0 1111111 1 01112111111
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-C-CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003433 395 MKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS-G-IRKDAVTY----NALLGGYGKQGKYDEVRRMFEQMKAD 468 (820)
Q Consensus 395 m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~ 468 (820)
+..+... - -. +.--.+.|+.-++.+... + .++....| .-.+-++...|++.++++.|+.|...
T Consensus 253 ----a~~~~~~-~---~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~ 321 (822)
T PRK14574 253 ----AVLPTRS-E---TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE 321 (822)
T ss_pred ----ccccccc-c---hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc
Confidence 1111000 0 00 001234455555554431 1 12221111 22344667778888888888888777
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003433 469 CVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAG-----LKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN 543 (820)
Q Consensus 469 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 543 (820)
+.+.-..+-..+.++|...++.++|..+|+.+.... ..++......|.-+|...+++++|..+++++.+. .|-
T Consensus 322 ~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~ 399 (822)
T PRK14574 322 GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPY 399 (822)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCc
Confidence 654344566677888888888888888888876532 1223444567777888888888888888888763 221
Q ss_pred HH-HHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhh
Q 003433 544 VV-TYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRC 622 (820)
Q Consensus 544 ~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (820)
.. .|.. ..-.-..++.++... .+.. ..-
T Consensus 400 ~~~~~~~--~~~~pn~d~~~~~~l----------------------------------~a~~---------------~~~ 428 (822)
T PRK14574 400 QVGVYGL--PGKEPNDDWIEGQTL----------------------------------LVQS---------------LVA 428 (822)
T ss_pred EEeccCC--CCCCCCccHHHHHHH----------------------------------HHHH---------------HHH
Confidence 00 0000 000000111111000 0000 011
Q ss_pred hhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHH
Q 003433 623 RQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSL 700 (820)
Q Consensus 623 ~~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~ 700 (820)
.++..+|.+.+++++. ..| |......+.+.+...|...+|++.++.+...+|.+..+..+..... ..++|.+|+.+
T Consensus 429 ~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 429 LNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred cCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 2355667777777766 445 5666778888888888888888888887777888777665554433 56788888888
Q ss_pred HHHHhhcCCCcc
Q 003433 701 FDEVKLMDSSTA 712 (820)
Q Consensus 701 ~~~~~~~~~~~~ 712 (820)
.+++++..|++.
T Consensus 507 ~~~l~~~~Pe~~ 518 (822)
T PRK14574 507 TDDVISRSPEDI 518 (822)
T ss_pred HHHHHhhCCCch
Confidence 888888888663
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.81 E-value=1.4e-13 Score=149.09 Aligned_cols=565 Identities=15% Similarity=0.109 Sum_probs=353.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003433 163 LRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSG 242 (820)
Q Consensus 163 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 242 (820)
+..+..+|++++|.+++..+++++ |.+...|..|+.+|-..|+.+++...+-.+....+. |...|..+.....+.|
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd---p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD---PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcc
Confidence 344555699999999999999996 444568999999999999999999988888776544 7799999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHhCCCHHHH
Q 003433 243 YCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSL----LAVCSRGGLWEAA 318 (820)
Q Consensus 243 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~l----l~~~~~~g~~~~A 318 (820)
.+++|.-.|.+.++.... +...+---...|.+.| +...|...|.++.+.....|..-+..+ +..+...++-+.|
T Consensus 222 ~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G-~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANPS-NWELIYERSSLYQKTG-DLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred cHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhC-hHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999986432 5555555677788899 999999999999987543343333333 4556677777999
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC---------------------------CCHH
Q 003433 319 RNLFNEMVHRG-IDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNIS---------------------------PNVV 370 (820)
Q Consensus 319 ~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~---------------------------p~~~ 370 (820)
.+.++.....+ -..+...++.++..|.+..+++.|......+...... ++..
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 99998887732 2345667889999999999999999888777652222 2222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 371 TYSTMIDGYAKAGRLDDALNMFSEMKFLG--IGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGG 448 (820)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 448 (820)
.+. ++-++.+....+....+...+.+.. ..-+...|.-+.++|.+.|++.+|+.+|..+.......+...|--+..+
T Consensus 380 v~r-l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 VIR-LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hHh-HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 211 2223344444444444444444444 3335567889999999999999999999999877656678899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHH
Q 003433 449 YGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ--------AGLKADVVLYSALIDALC 520 (820)
Q Consensus 449 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~p~~~~~~~li~~~~ 520 (820)
|...|.+++|.+.|+..+... +-+...-..|...|.+.|+.++|.+.+..+.. .+..|+..........+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 999999999999999998863 44566677888899999999999999998653 223344455555677788
Q ss_pred HcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccC--chhhhh
Q 003433 521 KNGLVESAVSLLDEMTKEG-----IRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQD--DKDVQE 593 (820)
Q Consensus 521 ~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~ 593 (820)
+.|+.++=+.+-..|+... +.|+..--.....+-...+...+-......+................+ ....+.
T Consensus 538 ~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~ 617 (895)
T KOG2076|consen 538 QVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVEL 617 (895)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhh
Confidence 8899888766666665421 111111111111111111111111111111111110000000000000 000000
Q ss_pred hccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCC--CCCH-H-H-HHHHHHHHhccCCHHHHHHHH
Q 003433 594 AGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKI--KPNV-V-T-FSAILNACSRCNSFEDASMLL 668 (820)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~--~Pd~-~-~-~~~ll~a~~~~g~~~eA~~~~ 668 (820)
.+.+.+.-.+.+.++.. .....+.+++|+.+...+....+ .++. . . =...+.++...+++.+|..++
T Consensus 618 ~~Lsiddwfel~~e~i~--------~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~l 689 (895)
T KOG2076|consen 618 RGLSIDDWFELFRELIL--------SLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYL 689 (895)
T ss_pred ccCcHHHHHHHHHHHHH--------HHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 00111111111111110 01223467788888877765431 2222 1 1 234556677889999999999
Q ss_pred HHHhhc-----CCchhHHHHHHHhcc--ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhh
Q 003433 669 EELRLF-----DNQVYGVAHGLLMGY--RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKR 741 (820)
Q Consensus 669 ~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 741 (820)
..|... ++--...++ +.+.+ ..++-.-=...+..+...++.+.+..+...|..+...|.+.-|..++..+-.
T Consensus 690 R~~i~~~~~~~~~~q~~l~n-~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~ 768 (895)
T KOG2076|consen 690 RSVITQFQFYLDVYQLNLWN-LDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR 768 (895)
T ss_pred HHHHHHHhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH
Confidence 988754 222111111 11111 1111111222333344445544455556667777888888888888766544
Q ss_pred hhh
Q 003433 742 RQV 744 (820)
Q Consensus 742 ~~~ 744 (820)
.+.
T Consensus 769 ~~p 771 (895)
T KOG2076|consen 769 QNP 771 (895)
T ss_pred hCC
Confidence 443
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=1.5e-16 Score=157.54 Aligned_cols=468 Identities=13% Similarity=0.090 Sum_probs=305.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHH
Q 003433 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT----VYAFSAL 234 (820)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l 234 (820)
...|...|..+..+.+|+..|+-+++....+ ....+-..+.+.+.+.+++.+|++.|+-++..-+..+ ....+.+
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~-nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFP-NAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccC-CCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 3446777777888999999999888765433 3334555688899999999999999998887533222 3456677
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHH--------HHHHH
Q 003433 235 ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRIT--------FNSLL 306 (820)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~--------~~~ll 306 (820)
...+.+.|++++|+..|+.+.+. .||..+-..|+-++...| +-++..+.|.+|+..-..+|..- -..|+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~-d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIG-DAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecC-cHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 77789999999999999998874 488776666666666677 88999999999986533333221 11222
Q ss_pred HHHHhCCC-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHH
Q 003433 307 AVCSRGGL-----------WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTM 375 (820)
Q Consensus 307 ~~~~~~g~-----------~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 375 (820)
.-..+... .++++-.-.+++.--+.|+- . . -.+-+++.++.-.-..+..+ .-..-
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~f------a-----~-g~dwcle~lk~s~~~~la~d--lei~k 425 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDF------A-----A-GCDWCLESLKASQHAELAID--LEINK 425 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccch------h-----c-ccHHHHHHHHHhhhhhhhhh--hhhhH
Confidence 22222111 11111111111111111110 0 0 11223333332211100001 11122
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003433 376 IDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAK--LGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQG 453 (820)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 453 (820)
..-|.++|+++.|+++++-+.+.+-+.-...-+.|-..+.- -.++..|...-+..+..+ +-+......-.......|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecC
Confidence 34578999999999999988876433333333444333333 235777777777666443 344444444444556689
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003433 454 KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLD 533 (820)
Q Consensus 454 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 533 (820)
++++|.+.|++.+...-.- ....-.+.-.+-..|++++|+..|-++...- ..++.+...+...|....+...|++++-
T Consensus 505 d~dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred cHHHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 9999999999998752111 1222234445778899999999998875432 2377788888999999999999999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHh
Q 003433 534 EMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKA 613 (820)
Q Consensus 534 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (820)
+.... +..|..++..|.+.|-+.|+-.+|.+.+-....++|.+.....++....+.
T Consensus 583 q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid----------------------- 638 (840)
T KOG2003|consen 583 QANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID----------------------- 638 (840)
T ss_pred Hhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh-----------------------
Confidence 87764 555777999999999999999999998888888877664333332221111
Q ss_pred cCCccchhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHHhhcCCchhHHH
Q 003433 614 GQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACS-RCNSFEDASMLLEELRLFDNQVYGVA 682 (820)
Q Consensus 614 ~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~-~~g~~~eA~~~~~~~~~~~~~~~~~~ 682 (820)
.+-.++|+..|++... ++|+.+-|..|+..|. +.|++++|.++|......-|++...+
T Consensus 639 ---------tqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldcl 697 (840)
T KOG2003|consen 639 ---------TQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCL 697 (840)
T ss_pred ---------hHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHH
Confidence 1234568899998766 8999999998887665 67999999999999887777765544
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.77 E-value=4.7e-13 Score=139.22 Aligned_cols=383 Identities=13% Similarity=0.073 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 003433 172 WSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVF 251 (820)
Q Consensus 172 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 251 (820)
...=.+++.++++. .|.+..+|...+. ..+.++|+.++.++.+- ++.+...|.+ |++...++.|..++
T Consensus 362 ~~~K~RVlRKALe~---iP~sv~LWKaAVe----lE~~~darilL~rAvec-cp~s~dLwlA----larLetYenAkkvL 429 (913)
T KOG0495|consen 362 TKNKKRVLRKALEH---IPRSVRLWKAAVE----LEEPEDARILLERAVEC-CPQSMDLWLA----LARLETYENAKKVL 429 (913)
T ss_pred HHHHHHHHHHHHHh---CCchHHHHHHHHh----ccChHHHHHHHHHHHHh-ccchHHHHHH----HHHHHHHHHHHHHH
Confidence 33344556666655 2444444443332 34445566666666654 3334444443 33445566666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 003433 252 NSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDML----RNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVH 327 (820)
Q Consensus 252 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~----~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 327 (820)
++..+. +..+...|.+-...--.+| +.+...++.++-+ ..|+..+..-|..=...|-..|..--+..+....+.
T Consensus 430 NkaRe~-iptd~~IWitaa~LEE~ng-n~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avig 507 (913)
T KOG0495|consen 430 NKAREI-IPTDREIWITAAKLEEANG-NVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIG 507 (913)
T ss_pred HHHHhh-CCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHh
Confidence 666552 3335555555444445555 5666655554433 345555555555555555555666555555555555
Q ss_pred CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003433 328 RGIDQD--IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRV 405 (820)
Q Consensus 328 ~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~ 405 (820)
.|++.. -.+|+.-...|.+.+.++-|+.+|...++.-. -+...|...+..--..|..++-..+|+++...- +-...
T Consensus 508 igvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~ 585 (913)
T KOG0495|consen 508 IGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEI 585 (913)
T ss_pred hccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-Ccchh
Confidence 554322 34555555556666666666666655554422 144455555554455555555555555555441 22333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003433 406 SYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYS 485 (820)
Q Consensus 406 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 485 (820)
.|.....-+-..|++..|+.++....+.. +.+...|-+-+.......+++.|..+|.+.... .|....|.--+....
T Consensus 586 lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er 662 (913)
T KOG0495|consen 586 LWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLER 662 (913)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHH
Confidence 44444445555555666655555555443 334555555555555555566666665555543 334444443333334
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCchhhh
Q 003433 486 KGGLYKEAMQIFREFKQAGLKAD-VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV-TYNSIIDAFGRSATTECT 563 (820)
Q Consensus 486 ~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a 563 (820)
-.++.++|++++++.++.- |+ ...|..+...+-+.++++.|.+.|..=.+. -|+.. .|..|...=-+.|.+-.|
T Consensus 663 ~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rA 738 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRA 738 (913)
T ss_pred HhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhH
Confidence 4455555555555555431 22 234555555555555555555555544432 33333 444444444555555555
Q ss_pred HHhHHHHhhhhhhh
Q 003433 564 VDDVERDLGKQKES 577 (820)
Q Consensus 564 ~~~~~~~l~~~~~~ 577 (820)
..+++++...+|.+
T Consensus 739 R~ildrarlkNPk~ 752 (913)
T KOG0495|consen 739 RSILDRARLKNPKN 752 (913)
T ss_pred HHHHHHHHhcCCCc
Confidence 55555555555544
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=1.3e-12 Score=141.77 Aligned_cols=358 Identities=14% Similarity=0.150 Sum_probs=254.9
Q ss_pred ccCCcchHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHH
Q 003433 135 FARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKN 214 (820)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 214 (820)
.++...+..-+.+.+...+..+..|..|...|-++|+.+++...+-.+...+ +.+...|..+.....++|.++.|+-
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~---p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN---PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHhcccHHHHHH
Confidence 3444444444445566666778899999999999999999999988777765 3333689999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHcCCCCHHHHHHHHHHH
Q 003433 215 IFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVT----YNAVIDACGKGGVDFKHVVEIFDDM 290 (820)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~g~~~~~A~~~~~~m 290 (820)
.|.++++..+. +....---+..|-+.|+...|.+.|.++......-|..- --.++..+...+ +-+.|.+.++..
T Consensus 229 cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~-~~e~a~~~le~~ 306 (895)
T KOG2076|consen 229 CYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN-ERERAAKALEGA 306 (895)
T ss_pred HHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHH
Confidence 99999998644 556666678899999999999999999998543222222 233455566777 668899988888
Q ss_pred HHCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---------------------------CCCCHHHHHHHHH
Q 003433 291 LRNG-VQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRG---------------------------IDQDIFTYNTLLD 342 (820)
Q Consensus 291 ~~~g-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g---------------------------~~~~~~~~~~ll~ 342 (820)
...+ -..+...++.++..+.+...++.|......+.... +..+..+ -.++-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhh
Confidence 7632 22355678888888999999999988887776621 1222222 12233
Q ss_pred HHHhcCCHHHHHHHHHHchhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 003433 343 AICKGAQMDLAFEIMAEMPAKN--ISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRF 420 (820)
Q Consensus 343 ~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~ 420 (820)
++......+...-+.....+.. +.-+...|.-+.++|.+.|++.+|+.+|..+......-+...|-.+..+|...|.+
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 3344444444444444444443 33355678888899999999999999999988875555677888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCCHHH
Q 003433 421 EEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKAD--------CVSPNLLTYSTLIDVYSKGGLYKE 492 (820)
Q Consensus 421 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~p~~~~~~~li~~~~~~g~~~~ 492 (820)
++|.+.|+..+... +.+...-..|...+.+.|+.++|.+.+..+..- +..|+........+.|.+.|+.++
T Consensus 466 e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 466 EEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999888765 455666777888889999999999998886521 233344444445566667777665
Q ss_pred HHHHHHH
Q 003433 493 AMQIFRE 499 (820)
Q Consensus 493 A~~~~~~ 499 (820)
=+.+-..
T Consensus 545 fi~t~~~ 551 (895)
T KOG2076|consen 545 FINTAST 551 (895)
T ss_pred HHHHHHH
Confidence 4443333
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.74 E-value=7.7e-12 Score=130.40 Aligned_cols=522 Identities=11% Similarity=0.062 Sum_probs=386.9
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003433 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (820)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 234 (820)
+.|.|..-++ ....+.|..+...+++.. |....+|..-+.. ..+...=.++++++++. ++.++..|-..
T Consensus 318 SeDvWLeaiR----Lhp~d~aK~vvA~Avr~~---P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~-iP~sv~LWKaA 386 (913)
T KOG0495|consen 318 SEDVWLEAIR----LHPPDVAKTVVANAVRFL---PTSVRLWLKAADL---ESDTKNKKRVLRKALEH-IPRSVRLWKAA 386 (913)
T ss_pred hHHHHHHHHh----cCChHHHHHHHHHHHHhC---CCChhhhhhHHhh---hhHHHHHHHHHHHHHHh-CCchHHHHHHH
Confidence 4556655443 456777888888888773 4444455443332 23445556788888876 55578788765
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 003433 235 ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL 314 (820)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 314 (820)
+. ....++|.-++.+..+. +.-+...|. ++.+.. .++.|..++.+..+. ++.+..+|.+-...--..|+
T Consensus 387 Ve----lE~~~darilL~rAvec-cp~s~dLwl----AlarLe-tYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn 455 (913)
T KOG0495|consen 387 VE----LEEPEDARILLERAVEC-CPQSMDLWL----ALARLE-TYENAKKVLNKAREI-IPTDREIWITAAKLEEANGN 455 (913)
T ss_pred Hh----ccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHH-HHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCC
Confidence 54 46677799999998873 222444554 445555 789999999999876 66688888888888888999
Q ss_pred HHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCC--HHHHHHHHHHHHHcCCHHHH
Q 003433 315 WEAARNLFNEMV----HRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN--VVTYSTMIDGYAKAGRLDDA 388 (820)
Q Consensus 315 ~~~A~~~~~~~~----~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A 388 (820)
.+...+++++-+ ..|+..+-..|-.=...+-+.|..-.+..+....+..|+.-. ..||..-...|.+.+.++-|
T Consensus 456 ~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~ca 535 (913)
T KOG0495|consen 456 VDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECA 535 (913)
T ss_pred HHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHH
Confidence 999999887654 458888999999999999999999999999999888776532 35888889999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003433 389 LNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKAD 468 (820)
Q Consensus 389 ~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 468 (820)
..+|...++.- +-+...|...+..--..|..++-..+|+++...- +.....|.....-+...|+...|+.++.+..+.
T Consensus 536 rAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~ 613 (913)
T KOG0495|consen 536 RAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEA 613 (913)
T ss_pred HHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Confidence 99999988764 5567788888877778899999999999998754 566788888888899999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HH
Q 003433 469 CVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV-TY 547 (820)
Q Consensus 469 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~ 547 (820)
. +.+...|..-+........++.|..+|.+.... .++...|.--+....-.++.++|++++++.++. .|+.. .|
T Consensus 614 ~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~ 688 (913)
T KOG0495|consen 614 N-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLW 688 (913)
T ss_pred C-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHH
Confidence 4 446778888899999999999999999998775 478888888888888899999999999999984 77876 88
Q ss_pred HHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHH
Q 003433 548 NSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEIL 627 (820)
Q Consensus 548 ~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (820)
..+.+.+-+.++++.|...|...++.-|....+ |-.+.++-. +.|. .-
T Consensus 689 lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipL-----------------WllLakleE-----k~~~----------~~ 736 (913)
T KOG0495|consen 689 LMLGQIEEQMENIEMAREAYLQGTKKCPNSIPL-----------------WLLLAKLEE-----KDGQ----------LV 736 (913)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhccccCCCCchH-----------------HHHHHHHHH-----Hhcc----------hh
Confidence 889999999999999999999999887754311 222222211 2222 23
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHh
Q 003433 628 CILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVK 705 (820)
Q Consensus 628 ~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~ 705 (820)
.|..+|++... -+| |...|...+.+=.+.|+.+.|..+..++++--|.+...+...+... +.+.--++...+++
T Consensus 737 rAR~ildrarl--kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkk-- 812 (913)
T KOG0495|consen 737 RARSILDRARL--KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKK-- 812 (913)
T ss_pred hHHHHHHHHHh--cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHh--
Confidence 47778888776 345 5667999999999999999999999988876665543333322221 11111122222222
Q ss_pred hcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhh
Q 003433 706 LMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQV 744 (820)
Q Consensus 706 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 744 (820)
+++++.+.-+.+.+++...+++.|++.|..+.....
T Consensus 813 ---ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 813 ---CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred ---ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 123344566667777777777777777766665543
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=1.3e-13 Score=137.03 Aligned_cols=408 Identities=16% Similarity=0.129 Sum_probs=284.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccC--ChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKN--DQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYG 239 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 239 (820)
+...+.+.+.+.+|+++|+.++.+-+... ....+.+.+...+.+.|++++|+..|+...+. .|+..+-..|+-++.
T Consensus 243 igni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f 320 (840)
T KOG2003|consen 243 IGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAF 320 (840)
T ss_pred ecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhe
Confidence 34557788899999999999988743322 23456777888899999999999999999886 467666666666677
Q ss_pred hcCChhHHHHHHHHHHhCCC------------CCCHHHHHHHH-----HHHHcCC-CCHHHHHHHHHHHHHCCCCCCHH-
Q 003433 240 RSGYCQEAISVFNSMKRYNL------------KPNLVTYNAVI-----DACGKGG-VDFKHVVEIFDDMLRNGVQPDRI- 300 (820)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~~~------------~p~~~~~~~ll-----~~~~~~g-~~~~~A~~~~~~m~~~g~~p~~~- 300 (820)
.-|+-++..+.|.+|+.... .|+....|..| ..+-+.+ .+-++++-.--+++.--+.|+-.
T Consensus 321 ~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~ 400 (840)
T KOG2003|consen 321 AIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA 400 (840)
T ss_pred ecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc
Confidence 78999999999999976432 23333333222 2222221 01222222222222222223210
Q ss_pred ----H--------HHH--------HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHH
Q 003433 301 ----T--------FNS--------LLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICK--GAQMDLAFEIMA 358 (820)
Q Consensus 301 ----~--------~~~--------ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~--~g~~~~A~~~~~ 358 (820)
. +.. -..-+.+.|+++.|++++.-+.+..-..-...-|.|-..+.- -.++..|.+.-+
T Consensus 401 g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad 480 (840)
T KOG2003|consen 401 GCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYAD 480 (840)
T ss_pred ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHH
Confidence 0 111 122467889999999999888776433223333444333333 335677777766
Q ss_pred HchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003433 359 EMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKD 438 (820)
Q Consensus 359 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 438 (820)
..+..+ .-+....+.-.+.-..+|++++|.+.+++.+..+-.-....|| +.-.+-..|++++|++.|-++...- ..+
T Consensus 481 ~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il-~nn 557 (840)
T KOG2003|consen 481 IALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAIL-LNN 557 (840)
T ss_pred HHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHH-Hhh
Confidence 655431 1133334444445566899999999999998764222223333 3446678899999999998774321 456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 439 AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDA 518 (820)
Q Consensus 439 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 518 (820)
..+...+...|....+..+|++++.+.... ++.|....+-|...|-+.|+-..|.+.+-+--+. ++.+..+...|..-
T Consensus 558 ~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ay 635 (840)
T KOG2003|consen 558 AEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAY 635 (840)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHH
Confidence 778888999999999999999999887765 6778899999999999999999999887665443 45588888889999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hhcCchhhhHHhHHHHhhhhhhhh
Q 003433 519 LCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAF-GRSATTECTVDDVERDLGKQKESA 578 (820)
Q Consensus 519 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~l~~~~~~~ 578 (820)
|....-+++|+..|++..- +.|+..-|..++..| .+.|+++.|.+++.+....+|++.
T Consensus 636 yidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedl 694 (840)
T KOG2003|consen 636 YIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDL 694 (840)
T ss_pred HHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccch
Confidence 9999999999999999876 789999999888755 678999999999999998888764
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.7e-12 Score=128.64 Aligned_cols=392 Identities=15% Similarity=0.206 Sum_probs=243.9
Q ss_pred chHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003433 140 VSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETA 219 (820)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 219 (820)
+++.+++... .+.+++.+..+|.++++-...+.|.++++......+. .+..+++.+|.+-. +....++..+|
T Consensus 193 G~vAdL~~E~--~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k--v~~~aFN~lI~~~S----~~~~K~Lv~EM 264 (625)
T KOG4422|consen 193 GAVADLLFET--LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGK--VYREAFNGLIGASS----YSVGKKLVAEM 264 (625)
T ss_pred ccHHHHHHhh--cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhe--eeHHhhhhhhhHHH----hhccHHHHHHH
Confidence 4455554443 3456778888888888888888888888877654322 22346666666544 33347788888
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHC-
Q 003433 220 LNEGYGNTVYAFSALISAYGRSGYCQE----AISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDF-KHVVEIFDDMLRN- 293 (820)
Q Consensus 220 ~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~-~~A~~~~~~m~~~- 293 (820)
......||..++|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.+ +. +.|..++.+....
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~-dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRES-DPQKVASSWINDIQNSL 343 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccC-CchhhhHHHHHHHHHhh
Confidence 888888899999999998888888775 4567778888889999889988888888877 44 3344444444321
Q ss_pred -C--C----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003433 294 -G--V----QPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRG----IDQD---IFTYNTLLDAICKGAQMDLAFEIMAE 359 (820)
Q Consensus 294 -g--~----~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g----~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~ 359 (820)
| + .-|...|...+..|.+..+.+.|.++..-+.... +.++ .+.|..+....|+....+.-..+|+.
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2 2256677788888888888888888877665431 1222 34566777788888888888888888
Q ss_pred chhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003433 360 MPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDA 439 (820)
Q Consensus 360 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 439 (820)
|+-.-.-|+..+...++.+..-.|.++-.-+++..++..|...+...... ++..|.+....|+.
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~ee----------------il~~L~~~k~hp~t 487 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREE----------------ILMLLARDKLHPLT 487 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHH----------------HHHHHhcCCCCCCC
Confidence 88776677888888888888888888888888888887764333322222 22233222222221
Q ss_pred HHHHHHHHHHHhc-CCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHH---
Q 003433 440 VTYNALLGGYGKQ-GKY-DEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL-KADVVLYS--- 513 (820)
Q Consensus 440 ~~~~~li~~~~~~-g~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~--- 513 (820)
..-..+-....++ -++ +....--.+|... .-.....+.+...+.+.|+.++|.++|..+.+.+- .|-....|
T Consensus 488 p~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~ 565 (625)
T KOG4422|consen 488 PEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMA 565 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHH
Confidence 1111111111111 011 1112222334443 23444556666667777888888888777754432 22333334
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC
Q 003433 514 ALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSA 558 (820)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 558 (820)
-+++.-.+.+....|..+++-|...+...-...-+.+...|.-+.
T Consensus 566 El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNq 610 (625)
T KOG4422|consen 566 ELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQ 610 (625)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCH
Confidence 445555667777778888887766543222223444455554433
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=1.9e-11 Score=122.96 Aligned_cols=399 Identities=11% Similarity=0.062 Sum_probs=273.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003433 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (820)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 237 (820)
.|..-.+-=..+++++.|+++|++++..+. .+..++..-+.+-.++..+..|+.+++.++..- +.-...|...+-+
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~---r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ym 150 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDY---RNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhccc---ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHH
Confidence 444444444556788889999999998753 334588888899999999999999999998863 3334567777777
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 003433 238 YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEA 317 (820)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 317 (820)
--..|++..|.++|++-.+ ..|+...|++.|+.-.+-. ..+.|..+|++.+- +.|++.+|--..+.-.+.|.+..
T Consensus 151 EE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRyk-eieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYK-EIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhh-HHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHH
Confidence 7788999999999999886 5799999999999988888 89999999999886 46899999888888889999999
Q ss_pred HHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH--
Q 003433 318 ARNLFNEMVHR-GI-DQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN--VVTYSTMIDGYAKAGRLDDALNM-- 391 (820)
Q Consensus 318 A~~~~~~~~~~-g~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~-- 391 (820)
|..+|+.+++. |- ..+...+++....-.++..++.|.-+|+-.++.-.+ + ...|......--+-|+.....+.
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk-~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPK-GRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 99999988774 21 112334555555555677888888888776654211 2 23344444333344543332222
Q ss_pred ------HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHH--------HHHHHhcCCH
Q 003433 392 ------FSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDA--VTYNAL--------LGGYGKQGKY 455 (820)
Q Consensus 392 ------~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l--------i~~~~~~g~~ 455 (820)
++.++..+ +-|-.+|-..+..-...|+.+...++|++.+..- +|-. ..|.-. +-.-....+.
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 33344433 5566677777777777788888888888877543 3321 111111 1111345777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003433 456 DEVRRMFEQMKADCVSPNLLTYSTLIDVYS----KGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSL 531 (820)
Q Consensus 456 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 531 (820)
+.+.++|+..++. ++...+|+.-+--+|+ ++.++..|.+++...+ |..|-..++...|..-.+.++++...++
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 7788888877764 4555566665544444 5667777887777665 3457777777777777788888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhh
Q 003433 532 LDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLG 572 (820)
Q Consensus 532 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~ 572 (820)
|++.++.+.. |..+|......=...|+.+.|..+++-++.
T Consensus 460 YEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 460 YEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 8888775322 455777666666666777766666555443
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=2.5e-12 Score=127.55 Aligned_cols=403 Identities=14% Similarity=0.178 Sum_probs=281.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHH--HHhcCChHHH-HHHHHHHHHcC-------------
Q 003433 160 TFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISI--LGRLGKVDLA-KNIFETALNEG------------- 223 (820)
Q Consensus 160 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A-~~~~~~~~~~~------------- 223 (820)
+.+++ +...|...++.-+|+.|.+.+....+ .+-..|++. |....++--| ++.|-.|.+.|
T Consensus 120 ~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~--kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 120 NNLLK-MISSREVKDSCILYERMRSENVDVSE--KVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred hHHHH-HHhhcccchhHHHHHHHHhcCCCCCH--HHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 33444 44578888888899988887643332 233333322 2222222111 22232222211
Q ss_pred ------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCC
Q 003433 224 ------YGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQP 297 (820)
Q Consensus 224 ------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p 297 (820)
.+.+..++..||.+.|+--..+.|.+++++-.....+.+..+||.+|.+-. +....++..+|+...+.|
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S-----~~~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS-----YSVGKKLVAEMISQKMTP 271 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH-----hhccHHHHHHHHHhhcCC
Confidence 233667899999999999999999999999988777889999999998763 344478899999999999
Q ss_pred CHHHHHHHHHHHHhCCCHHHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHchh----CCCC--
Q 003433 298 DRITFNSLLAVCSRGGLWEAA----RNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDL-AFEIMAEMPA----KNIS-- 366 (820)
Q Consensus 298 ~~~~~~~ll~~~~~~g~~~~A----~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~-A~~~~~~m~~----~g~~-- 366 (820)
|..|||+++.+..+.|+++.| .+++.+|.+.|++|...+|..+|..+++.++..+ |..++.++.. +.++
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 999999999999999987764 5678889999999999999999999999888754 5555544432 2222
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003433 367 --PNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLG----IGLD---RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK 437 (820)
Q Consensus 367 --p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~d---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 437 (820)
.|..-|..-++.|.+..+.+-|.++..-+.... +.++ ..-|..+....|+....+.-...|+.|+-.-+-|
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p 431 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFP 431 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecC
Confidence 245566777888889999999988876654321 2233 2346777888899999999999999998766678
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-C--------HHH-----HHHHH------
Q 003433 438 DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGG-L--------YKE-----AMQIF------ 497 (820)
Q Consensus 438 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~--------~~~-----A~~~~------ 497 (820)
+..+...++.+..-.|.++-..+++..++..|...+.....-++..+++.. + +.. |..++
T Consensus 432 ~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~ 511 (625)
T KOG4422|consen 432 HSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQ 511 (625)
T ss_pred CchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 889999999999999999999999999988875555544444444555433 1 111 11111
Q ss_pred -HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHH---HHHHHHhhcCchhhhHHhHHHHhh
Q 003433 498 -REFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGI-RPNVVTYN---SIIDAFGRSATTECTVDDVERDLG 572 (820)
Q Consensus 498 -~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~---~ll~~~~~~g~~~~a~~~~~~~l~ 572 (820)
.+|.+ .+......+.+.-.+.+.|+.++|.++|....+.+- .|-....+ .+++.-.+..+.-+|+..++-++.
T Consensus 512 ~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 512 PIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred HHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 12222 234566677788888999999999999999965532 23333344 556666666777777776655544
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=2.7e-13 Score=136.74 Aligned_cols=220 Identities=12% Similarity=0.066 Sum_probs=139.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003433 450 GKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAV 529 (820)
Q Consensus 450 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 529 (820)
.-.|+.-.|..-|+..+..... +...|.-+..+|....+.++..+.|++..+.++. |..+|..-...+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 3455666666666666654321 1122555555666666666666666666665543 5555555555555566666666
Q ss_pred HHHHHHHHCCCCCCHH-HHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHH
Q 003433 530 SLLDEMTKEGIRPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQL 608 (820)
Q Consensus 530 ~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (820)
.-|++.+.. .|+.. .|..+.-+..+.++++
T Consensus 415 aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~----------------------------------------------- 445 (606)
T KOG0547|consen 415 ADFQKAISL--DPENAYAYIQLCCALYRQHKIA----------------------------------------------- 445 (606)
T ss_pred HHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 666666652 33322 4444444444444444
Q ss_pred HHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHH--
Q 003433 609 VAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGL-- 685 (820)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~-- 685 (820)
++...|++... --|+ ...|+....++..++++++|.+.|+.+.++.|...++..+.
T Consensus 446 -------------------~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p 504 (606)
T KOG0547|consen 446 -------------------ESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP 504 (606)
T ss_pred -------------------HHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence 34445555544 2233 34566666777788899999999999887777644433221
Q ss_pred -----Hhccc-cchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhh
Q 003433 686 -----LMGYR-DNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (820)
Q Consensus 686 -----~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (820)
++..+ .+++..|+.+.++++++||.. ...|.+|+.+..+.|+.++|+++|+++...
T Consensus 505 lV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkc-e~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 505 LVHKALLVLQWKEDINQAENLLRKAIELDPKC-EQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hhhhhHhhhchhhhHHHHHHHHHHHHccCchH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 12222 578889999999999999976 455999999999999999999999887554
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=7.2e-12 Score=125.87 Aligned_cols=360 Identities=12% Similarity=0.061 Sum_probs=246.8
Q ss_pred CChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 003433 190 NDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAV 269 (820)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 269 (820)
..+...+...+..+.+.|..+.|+..|...+.. .+..=.+|..|.... .+.+.+..+...+.. +-....--.+
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~~l~~~l~~---~~h~M~~~F~ 233 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILSILVVGLPS---DMHWMKKFFL 233 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHHHHHhcCcc---cchHHHHHHH
Confidence 445566777778888889999999998888764 233444454444432 223322222211111 0111112234
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhc
Q 003433 270 IDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGI--DQDIFTYNTLLDAICKG 347 (820)
Q Consensus 270 l~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~ 347 (820)
..++.... +.+++++-.+.....|+.-+...-+....+.....++|+|+.+|+++.+... -.|..+|+.++-.-..+
T Consensus 234 ~~a~~el~-q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 234 KKAYQELH-QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 45555666 6788888888888888776666666666667788899999999999988732 12566666655433322
Q ss_pred CCHH-HHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003433 348 AQMD-LAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLV 426 (820)
Q Consensus 348 g~~~-~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~ 426 (820)
.++. .|..++. +.+ --..|.-.+.+.|.-.++.++|+..|++.++.+ +-....|+.+..-|....+...|++.
T Consensus 313 skLs~LA~~v~~-idK----yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 313 SKLSYLAQNVSN-IDK----YRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHHHHHHHHHH-hcc----CCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 2221 1222222 111 134566777888888889999999999988875 44567788888889999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003433 427 CKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLK 506 (820)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 506 (820)
++..++.. +.|-..|..|.++|.-.+...=|+-.|++.... .+-|...|.+|..+|.+.++.++|++.|......|-
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d- 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD- 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-
Confidence 99988776 678888999999999999999999999988775 255788899999999999999999999999888763
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHH--HHHHHHHHHhhcCchhhhHHh
Q 003433 507 ADVVLYSALIDALCKNGLVESAVSLLDEMTKE----GIRPNVV--TYNSIIDAFGRSATTECTVDD 566 (820)
Q Consensus 507 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~--~~~~ll~~~~~~g~~~~a~~~ 566 (820)
.+...+..|...|-+.++.++|...|++-++. |..-+.. +..-|..-+.+.+++++|-..
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Y 529 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYY 529 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 25678888999999999999998888877652 4333322 223344556777787777543
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=6.8e-10 Score=111.94 Aligned_cols=496 Identities=13% Similarity=0.091 Sum_probs=349.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003433 195 LASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG 274 (820)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 274 (820)
.+..-+..--.++++..|+.+|+.++..+. .+...|...+.+-.++..+..|..++++....=+..|. .|.-.+..--
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE 152 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHH
Confidence 444555556678899999999999998764 48889999999999999999999999999874322233 3333343444
Q ss_pred cCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003433 275 KGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAF 354 (820)
Q Consensus 275 ~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 354 (820)
..| ++..|.++|++... ..|+...|.+.++.-.+...++.|..++++.+-. .|++.+|--....-.+.|+...|.
T Consensus 153 ~Lg-Ni~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 153 MLG-NIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred Hhc-ccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence 567 89999999999987 5899999999999999999999999999999874 589999999999999999999999
Q ss_pred HHHHHchhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCH---HHHHH--
Q 003433 355 EIMAEMPAK-NI-SPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD--RVSYNTVLSIYAKLGRF---EEALL-- 425 (820)
Q Consensus 355 ~~~~~m~~~-g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d--~~~~~~li~~~~~~g~~---~~A~~-- 425 (820)
.+|+...+. |- .-+...+.+....-.++..++.|.-+|+-.+..= +.+ ...|..+...--+-|+. ++++-
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 999987753 10 0122344444444556778899999998887652 223 34555555544455654 33332
Q ss_pred ---HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHH--------HHhcCCHHH
Q 003433 426 ---VCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLL--TYSTLIDV--------YSKGGLYKE 492 (820)
Q Consensus 426 ---~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~--------~~~~g~~~~ 492 (820)
-|+.+++.+ +-|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|...|.. -....+.+.
T Consensus 307 Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 307 RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 244555544 567888888888888999999999999999876 455321 22222211 124678999
Q ss_pred HHHHHHHHHHCCCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHH
Q 003433 493 AMQIFREFKQAGLKADVVLY----SALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVE 568 (820)
Q Consensus 493 A~~~~~~m~~~~~~p~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 568 (820)
+.++|+..++. ++....|+ -.......++.++..|.+++..++ |.-|..-+|...|..=.+.++++....+++
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999884 22334444 444455568889999999999887 568999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCC-CCCHHH
Q 003433 569 RDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKI-KPNVVT 647 (820)
Q Consensus 569 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~-~Pd~~~ 647 (820)
+-++..|++. ..|.....+-.. .|+.+.|..+|.-.++... +--...
T Consensus 462 kfle~~Pe~c-----------------~~W~kyaElE~~---------------LgdtdRaRaifelAi~qp~ldmpell 509 (677)
T KOG1915|consen 462 KFLEFSPENC-----------------YAWSKYAELETS---------------LGDTDRARAIFELAISQPALDMPELL 509 (677)
T ss_pred HHHhcChHhh-----------------HHHHHHHHHHHH---------------hhhHHHHHHHHHHHhcCcccccHHHH
Confidence 9999988763 233333332222 2377889999998876442 223555
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHh---cc---ccc-----------hHHHHHHHHHHHhh----
Q 003433 648 FSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLM---GY---RDN-----------IWVQALSLFDEVKL---- 706 (820)
Q Consensus 648 ~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~-----------~~~~A~~~~~~~~~---- 706 (820)
|-+.|+-=...|.++.|+.+|+.++...+..- ++..+.. +. ..+ +...|..+|+++..
T Consensus 510 wkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~ 588 (677)
T KOG1915|consen 510 WKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKE 588 (677)
T ss_pred HHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHh
Confidence 77777777789999999999999997665433 4333321 11 122 56678888888754
Q ss_pred cCCCcc-hhHHHHHHHHHhhcCchHHHHHHH
Q 003433 707 MDSSTA-SAFYNALTDMLWHFGQKRGAQLVV 736 (820)
Q Consensus 707 ~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 736 (820)
.+|+.. ...+...-++-...|.-.+-..|-
T Consensus 589 ~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~ 619 (677)
T KOG1915|consen 589 STPKEERLMLLEAWKNMEETFGTEGDVERVQ 619 (677)
T ss_pred cCcHHHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 233211 122333333444456555544443
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=6.4e-11 Score=119.18 Aligned_cols=331 Identities=11% Similarity=0.059 Sum_probs=237.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHH-
Q 003433 223 GYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRIT- 301 (820)
Q Consensus 223 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~- 301 (820)
+...|...+...+..+.+.|....|++.|......- .-.-.+|..|...+. +.+.+ ...... ...|...
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit----~~e~~----~~l~~~-l~~~~h~M 228 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELIT----DIEIL----SILVVG-LPSDMHWM 228 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhc----hHHHH----HHHHhc-CcccchHH
Confidence 345577777777778888999999999999887531 123444444444332 22222 222221 1212111
Q ss_pred -HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC--CCHHHHHHHHHH
Q 003433 302 -FNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNIS--PNVVTYSTMIDG 378 (820)
Q Consensus 302 -~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~ 378 (820)
=-.+..++-.....+++.+-.+.....|++.+...-+-...+.....++|.|+.+|+++.+..+- -|..+|+.++-
T Consensus 229 ~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY- 307 (559)
T KOG1155|consen 229 KKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY- 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH-
Confidence 12244566666688888888888888888877777777777778888999999999999876311 15667777653
Q ss_pred HHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003433 379 YAKAGRLDDALNMFSEMK-FLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDE 457 (820)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~-~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 457 (820)
.+..+-. +..+.+-. +.+ +--..|...+.+.|+-.++.++|...|++.++.+ +.....|+.+..-|....+...
T Consensus 308 -v~~~~sk--Ls~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 308 -VKNDKSK--LSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred -HHhhhHH--HHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHH
Confidence 3333222 12222211 111 3345678888889999999999999999998876 5667888888899999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 458 VRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 458 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
|.+-++..++.+ +.|...|-.|.++|.-.+...-|+-.|++..+..+. |...|.+|+.+|.+.++.++|++.|++...
T Consensus 383 Ai~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 383 AIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 999999988874 668889999999999999999999999999887543 889999999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhh
Q 003433 538 EGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLG 572 (820)
Q Consensus 538 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~ 572 (820)
.|-. +...+..|.+.+-+.++.++|.+.+++-++
T Consensus 461 ~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 461 LGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred cccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6532 556888888888888888888776655443
No 40
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.62 E-value=3e-09 Score=111.37 Aligned_cols=530 Identities=13% Similarity=0.164 Sum_probs=305.2
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003433 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (820)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 234 (820)
-|..|..-+.-+..+|+...-+..|++++..-+... ...+|...+......|-.+.+..+|++.++. ++..-+-.
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtq-H~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eey 175 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQ-HDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEY 175 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHh-hccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHH
Confidence 367888888999999999999999999987643222 2357888888888889999999999999885 44557888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHCCCCCC--HHHHH
Q 003433 235 ISAYGRSGYCQEAISVFNSMKRYN------LKPNLVTYNAVIDACGKGGVDFK---HVVEIFDDMLRNGVQPD--RITFN 303 (820)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~g~~~~---~A~~~~~~m~~~g~~p~--~~~~~ 303 (820)
|..+++.+++++|.+.+....... .+.+-..|.-+-+...++. +.- ....+++.++.. -+| ...|.
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p-~~~~slnvdaiiR~gi~r--ftDq~g~Lw~ 252 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNP-DKVQSLNVDAIIRGGIRR--FTDQLGFLWC 252 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCc-chhcccCHHHHHHhhccc--CcHHHHHHHH
Confidence 999999999999999999886431 2335556777777766654 222 222334444332 234 34688
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------------------CHHHHHHHHHHch
Q 003433 304 SLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGA----------------------QMDLAFEIMAEMP 361 (820)
Q Consensus 304 ~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g----------------------~~~~A~~~~~~m~ 361 (820)
.|.+.|.+.|.++.|..+|++.+..- .++.-++.+.+.|++-. +++..+..|+.+.
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm 330 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLM 330 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999988752 23344444444444321 1223333444433
Q ss_pred hCC-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHcCCHHHHH
Q 003433 362 AKN-----------ISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD------RVSYNTVLSIYAKLGRFEEAL 424 (820)
Q Consensus 362 ~~g-----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d------~~~~~~li~~~~~~g~~~~A~ 424 (820)
..+ -.-++..|..-+.. ..|+..+-+..+.++++.- .|. ...|..+.+.|-..|+++.|.
T Consensus 331 ~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aR 407 (835)
T KOG2047|consen 331 NRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDAR 407 (835)
T ss_pred hccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHH
Confidence 321 01133344433332 3456666777777766541 221 245777778888888888888
Q ss_pred HHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------------CHHHHHHHHHHH
Q 003433 425 LVCKEMESSGIRKD---AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP-----------------NLLTYSTLIDVY 484 (820)
Q Consensus 425 ~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----------------~~~~~~~li~~~ 484 (820)
.+|++..+..++-- ..+|.....+-.+..+++.|+++.+.....--.| +...|+..++.-
T Consensus 408 vifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dle 487 (835)
T KOG2047|consen 408 VIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLE 487 (835)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHH
Confidence 88888776543321 3456666666667777888888777665421110 122344444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhh---cCch
Q 003433 485 SKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV-TYNSIIDAFGR---SATT 560 (820)
Q Consensus 485 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~---~g~~ 560 (820)
-..|-++.-..+++++++..+. ++.........+-.+.-++++.++|++-+..=-.|+.. .|++.+.-+.+ .-+.
T Consensus 488 Es~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~kl 566 (835)
T KOG2047|consen 488 ESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKL 566 (835)
T ss_pred HHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCH
Confidence 4556667777777777665543 33322223333444555677777777655442234443 66665554422 2356
Q ss_pred hhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCC
Q 003433 561 ECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLK 640 (820)
Q Consensus 561 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~ 640 (820)
+.|..+++++++.-|.. ....+.-.|+++..+ .| ....|+.++++.-. +
T Consensus 567 EraRdLFEqaL~~Cpp~-------------------~aKtiyLlYA~lEEe-~G----------Lar~amsiyerat~-~ 615 (835)
T KOG2047|consen 567 ERARDLFEQALDGCPPE-------------------HAKTIYLLYAKLEEE-HG----------LARHAMSIYERATS-A 615 (835)
T ss_pred HHHHHHHHHHHhcCCHH-------------------HHHHHHHHHHHHHHH-hh----------HHHHHHHHHHHHHh-c
Confidence 66777777777643311 112333344444221 12 33346666666433 3
Q ss_pred CCCCHH--HHHHHHHHHh-ccCCHHHHHHHHHHHhhcCCchhHHHHHH-Hh--ccccchHHHHHHHHHHHhh-cCCCcch
Q 003433 641 IKPNVV--TFSAILNACS-RCNSFEDASMLLEELRLFDNQVYGVAHGL-LM--GYRDNIWVQALSLFDEVKL-MDSSTAS 713 (820)
Q Consensus 641 ~~Pd~~--~~~~ll~a~~-~~g~~~eA~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~A~~~~~~~~~-~~~~~~~ 713 (820)
+++... .|+..|.--. --| +..-+.+|+++.+.=|+.....-.+ +. -.+-|..+.|..++...-+ .+|..+.
T Consensus 616 v~~a~~l~myni~I~kaae~yG-v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~ 694 (835)
T KOG2047|consen 616 VKEAQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTT 694 (835)
T ss_pred CCHHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCCh
Confidence 443322 2443332111 111 2233445555444323222211111 00 1134666667766666544 4666666
Q ss_pred hHHHHHHHHHhhcCchH
Q 003433 714 AFYNALTDMLWHFGQKR 730 (820)
Q Consensus 714 ~~~~~l~~~~~~~g~~~ 730 (820)
.+|++.-+--.+.|+-+
T Consensus 695 ~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 695 EFWDTWKEFEVRHGNED 711 (835)
T ss_pred HHHHHHHHHHHhcCCHH
Confidence 67777666666677633
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=7.8e-12 Score=134.74 Aligned_cols=285 Identities=13% Similarity=0.060 Sum_probs=185.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHH
Q 003433 276 GGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTY--NTLLDAICKGAQMDLA 353 (820)
Q Consensus 276 ~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~--~~ll~~~~~~g~~~~A 353 (820)
.| +++.|.+.+....+..-. ....|........+.|+++.|...+.++.+. .|+...+ ......+...|+++.|
T Consensus 97 eG-d~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EG-DYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CC-CHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 45 677777666655443111 1222222233346677777777777777664 2333222 2335566777777777
Q ss_pred HHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHH
Q 003433 354 FEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDR-------VSYNTVLSIYAKLGRFEEALLV 426 (820)
Q Consensus 354 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~-------~~~~~li~~~~~~g~~~~A~~~ 426 (820)
.+.++++.+.... +......+...|.+.|++++|.+++..+.+.+...+. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7777777666533 5566667777777777777777777777766533211 1223333333344445555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003433 427 CKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLK 506 (820)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 506 (820)
++.+.+. .+.++.....+...+...|+.++|.+++++..+. .+|.... ++.+....++.+++.+..+...+..+.
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 5555332 2457777888888888888888888888888774 4454222 233334558888888888888877543
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhh
Q 003433 507 ADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGK 573 (820)
Q Consensus 507 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~ 573 (820)
|...+..+...+.+.|++++|.+.|+++.+ ..|+..++..+..++.+.|+.++|.+++++++..
T Consensus 327 -~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 327 -TPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 677788888888888888888888888887 4688888888888888888888888888877654
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=2.4e-11 Score=122.93 Aligned_cols=399 Identities=15% Similarity=0.080 Sum_probs=270.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003433 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 238 (820)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 238 (820)
+-...+.+.++|++++|+++|.+++... ++....|.....+|...|++++..+--.++++.++. -+.++.--..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHH
Confidence 3345667889999999999999999884 333568999999999999999999988888876422 356777777788
Q ss_pred HhcCChhHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CC--CCCCHHHHHHHHHHHHh---
Q 003433 239 GRSGYCQEAISVFNSMK-RYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLR-NG--VQPDRITFNSLLAVCSR--- 311 (820)
Q Consensus 239 ~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~-~g--~~p~~~~~~~ll~~~~~--- 311 (820)
-..|++++|+.=..-.- -.|+. |..+--.+=+.+-+ .|..-..+-.+ .+ +-|......+....+..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk------~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKK------QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHH------HHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 88888888754322211 11111 11111111111111 11111222111 11 22333333332222211
Q ss_pred ----------------------CC---CHHHHHHHHHHHHHC---CCCCC---------HHHHHHHHHHHHhcCCHHHHH
Q 003433 312 ----------------------GG---LWEAARNLFNEMVHR---GIDQD---------IFTYNTLLDAICKGAQMDLAF 354 (820)
Q Consensus 312 ----------------------~g---~~~~A~~~~~~~~~~---g~~~~---------~~~~~~ll~~~~~~g~~~~A~ 354 (820)
.+ .+..|...+.+-... ....+ ..+...-...+.-.|+.-.|.
T Consensus 267 ~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~ 346 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQ 346 (606)
T ss_pred ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhh
Confidence 01 122222222221110 00111 122222233345578999999
Q ss_pred HHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003433 355 EIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSG 434 (820)
Q Consensus 355 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 434 (820)
+-|+..+.....+ ...|--+..+|.+..+-++..+.|.+....+ +-|..+|..-..++.-.+++++|..=|++.++..
T Consensus 347 ~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~ 424 (606)
T KOG0547|consen 347 EDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD 424 (606)
T ss_pred hhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999998875442 2337778888999999999999999999886 6677888888888888999999999999998776
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCH
Q 003433 435 IRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLK-----ADV 509 (820)
Q Consensus 435 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~ 509 (820)
+-+...|..+..+..+.+++++++..|++.+.+ ++.-...|+.....+...+++++|.+.|+..++.... .+.
T Consensus 425 -pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~ 502 (606)
T KOG0547|consen 425 -PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA 502 (606)
T ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc
Confidence 556788888888888999999999999999887 5666889999999999999999999999998864321 122
Q ss_pred HH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCchhhhHHhHHHHhhhhh
Q 003433 510 VL--YSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQK 575 (820)
Q Consensus 510 ~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~ 575 (820)
.. .-.++-.- -.+++..|+.+++++.+. .|... .|.+|...-.+.|++++|+++++++..+..
T Consensus 503 ~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 503 APLVHKALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hhhhhhhHhhhc-hhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 11 12222222 238899999999999984 55544 899999999999999999999998776543
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.58 E-value=6.4e-12 Score=136.24 Aligned_cols=291 Identities=10% Similarity=0.020 Sum_probs=184.4
Q ss_pred cCCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003433 275 KGGVDFKHVVEIFDDMLRNGVQPD-RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLA 353 (820)
Q Consensus 275 ~~g~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A 353 (820)
..| +++.|.+.+.+..+.. |+ ...+-....++...|+.+.|.+.+.++.+........+.-.....+...|+++.|
T Consensus 96 ~~g-~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEG-DYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCC-CHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 345 6777777777666542 33 2333344555666777777777777776543222223344456667777777777
Q ss_pred HHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHH---HHHHcCCHHHHHHHHHH
Q 003433 354 FEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYN-TVLS---IYAKLGRFEEALLVCKE 429 (820)
Q Consensus 354 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~-~li~---~~~~~g~~~~A~~~~~~ 429 (820)
.+.++.+.+..+. +...+..+...|.+.|++++|.+++..+.+.+.. +...+. .-.. .....+..+++.+.+..
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 7777777776533 5566777777777777777777777777776532 332221 1111 11222333333334444
Q ss_pred HHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003433 430 MESSGI---RKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLT---YSTLIDVYSKGGLYKEAMQIFREFKQA 503 (820)
Q Consensus 430 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 503 (820)
+.+... +.+...+..++..+...|+.++|.+++++..+. .||... ...........++.+.+.+.++...+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 443321 237777888888888888888888888888775 334331 111222233457778888888887765
Q ss_pred CCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhh
Q 003433 504 GLKADV--VLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGK 573 (820)
Q Consensus 504 ~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~ 573 (820)
.+. |. ....++...+.+.|++++|.+.|+........||..++..+...+.+.|+.++|.+++++++..
T Consensus 329 ~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 329 VDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 432 44 5667888888888999999998885444335788888888888888889888888888876653
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=9.8e-13 Score=138.47 Aligned_cols=287 Identities=16% Similarity=0.123 Sum_probs=206.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCCCHHHHHH
Q 003433 208 KVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNL--KPNLVTYNAVIDACGKGGVDFKHVVE 285 (820)
Q Consensus 208 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~~A~~ 285 (820)
+..+|...|+++... ...+..+...+..+|...+++++|.++|+.+.+... .-+...|.+.+--+.+ +-++.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~-----~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD-----EVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh-----hHHHH
Confidence 457888888885544 333556777788888888888888888888876431 1266777777765532 22333
Q ss_pred HH-HHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCC
Q 003433 286 IF-DDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN 364 (820)
Q Consensus 286 ~~-~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 364 (820)
++ +.++.. -+-...+|-++.++|.-+++.+.|++.|++.++.+ +....+|+.+..-+.....+|.|...|+..+...
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 32 222322 12357788888888888888888888888888853 2267788888888888888888888888877652
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003433 365 ISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNA 444 (820)
Q Consensus 365 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 444 (820)
.. +-.+|--|...|.+.++++.|+-.|+++.+.. +-+.+....+...+-+.|+.|+|+++|+++...+ +.|+..-.-
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYH 562 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHH
Confidence 21 33344556777888888888888888888775 5567777778888888888888888888887766 556666556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003433 445 LLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLK 506 (820)
Q Consensus 445 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 506 (820)
.+..+...+++++|+..++++++. ++.+...+..+...|.+.|+.+.|+.-|.-+.+..++
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 677777788888888888888775 3445566777778888888888888888877776544
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.57 E-value=7.8e-12 Score=135.56 Aligned_cols=292 Identities=12% Similarity=0.040 Sum_probs=179.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHH
Q 003433 204 GRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHV 283 (820)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A 283 (820)
...|+++.|++.+.+..+.... ....+-....++.+.|+++.|.++|.+..+....++....-.....+...| +++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~-~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQN-ELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC-CHHHH
Confidence 4567777777777776664322 233344455666777777777777777765332222223333455566677 77777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HhcCCHHHHHHHHHH
Q 003433 284 VEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYN-TLLDAI---CKGAQMDLAFEIMAE 359 (820)
Q Consensus 284 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~-~ll~~~---~~~g~~~~A~~~~~~ 359 (820)
...++.+.+.... +...+..+...+...|++++|.+.+..+.+.+... ...+. .-...+ ...+..+++.+.+.+
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 7777777776433 55666777777777777777777777777765432 22221 111111 222222222333333
Q ss_pred chhCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 360 MPAKNI---SPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVS---YNTVLSIYAKLGRFEEALLVCKEMESS 433 (820)
Q Consensus 360 m~~~g~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~ 433 (820)
+.+... +.+...+..+...+...|+.++|.+++++..+. .||... .....-.....++.+.+++.+++..+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 333211 126677777778888888888888888888776 334331 111112223346777788888777655
Q ss_pred CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003433 434 GIRKDA--VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (820)
Q Consensus 434 ~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (820)
. +.|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 329 ~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 V-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred C-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 4455 566778888888888888888888533333467887788888888888888888888887643
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=2.8e-11 Score=130.42 Aligned_cols=127 Identities=19% Similarity=0.130 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 403 DRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLID 482 (820)
Q Consensus 403 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 482 (820)
+......+...+...|+.++|.+++++..+. .+|.... ++.+....++.+++.+..+...+.. +-|...+..+..
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgr 336 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQ 336 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3444444455555555555555555544442 2232111 1222223355555555555544431 233334445555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 483 VYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (820)
Q Consensus 483 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (820)
.|.+.+++++|.+.|+.+.+. .|+...|..+...+.+.|+.++|..+|++.+
T Consensus 337 l~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 337 LLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555543 2455555555555555555555555555443
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=7.4e-13 Score=139.37 Aligned_cols=287 Identities=13% Similarity=0.116 Sum_probs=226.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCH-HHHHH
Q 003433 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRG--IDQDIFTYNTLLDAICKGAQM-DLAFE 355 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~g~~-~~A~~ 355 (820)
+..+|...|++.... +.-..++...+.++|...+++++|+++|+.+.+.. ...+..+|.+.+.-+-+.=.. -.|.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 568999999995554 33345777888999999999999999999998763 123577888777655332111 12333
Q ss_pred HHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003433 356 IMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI 435 (820)
Q Consensus 356 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 435 (820)
+.+.+. -...+|-++.++|.-+++.+.|++.|++.++.+ +-...+|+.+..=+.....+|.|...|+..+...
T Consensus 413 Li~~~~-----~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 413 LIDTDP-----NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHhhCC-----CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 333333 267899999999999999999999999999874 3477899999988999999999999999988533
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003433 436 RKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSAL 515 (820)
Q Consensus 436 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 515 (820)
+.+-..|.-|.-.|.+.++++.|+-.|++.++.+ +-+.+....+...+.+.|+.++|+++|+++...+.+ |+..--..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 2334455556778999999999999999999874 456777778888999999999999999999987765 66665667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCchhhhHHhHHHHhhhhhhh
Q 003433 516 IDALCKNGLVESAVSLLDEMTKEGIRPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (820)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (820)
+..+...+++++|+..++++.+ +.|+.. ++..+...|-+.|+.+.|+..+.-+....|..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 7888899999999999999998 466654 78888889999999999998877777766643
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.56 E-value=1.5e-14 Score=148.87 Aligned_cols=259 Identities=17% Similarity=0.158 Sum_probs=65.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 003433 199 MISILGRLGKVDLAKNIFETALNEG-YGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGG 277 (820)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 277 (820)
+...+.+.|++++|+++++...... .+.+...|..+...+...++++.|++.++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 3444555555555555553332221 1223444444444555555555555555555543322 33334444443 3444
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003433 278 VDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRG-IDQDIFTYNTLLDAICKGAQMDLAFEI 356 (820)
Q Consensus 278 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~~ 356 (820)
++++|.+++++..+. .++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.
T Consensus 92 -~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 92 -DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred -ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 455555555444332 1233444444455555555555555555544321 223444455555555555555555555
Q ss_pred HHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003433 357 MAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIR 436 (820)
Q Consensus 357 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 436 (820)
|++..+..+. |......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+..|++..+.. +
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 5555544221 34444555555555555555555554444332 2233344455555555555555555555554433 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003433 437 KDAVTYNALLGGYGKQGKYDEVRRMFEQM 465 (820)
Q Consensus 437 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m 465 (820)
.|..+...+..++.+.|+.++|.++..+.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp T-HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 34555555555555555555555555443
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.55 E-value=3.4e-14 Score=146.31 Aligned_cols=259 Identities=19% Similarity=0.188 Sum_probs=58.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCC
Q 003433 306 LAVCSRGGLWEAARNLFNEMVHRG-IDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR 384 (820)
Q Consensus 306 l~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 384 (820)
...+.+.|++++|.+++++..... .+.|...|..+.......++++.|++.++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 333444444444444443322221 1222333333333444444444444444444443222 23333333333 34444
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003433 385 LDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSG-IRKDAVTYNALLGGYGKQGKYDEVRRMFE 463 (820)
Q Consensus 385 ~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 463 (820)
+++|.+++.+..+. .++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444443332 1233333444444444444444444444433211 12334444444444444555555555554
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003433 464 QMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN 543 (820)
Q Consensus 464 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 543 (820)
+.++.. +.|....+.++..+...|+.+++.++++...+.. ..|...|..+..+|...|+.++|+..|++..+.. ..|
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 444431 1123444444444444444444444444443322 1233344444445555555555555555544421 113
Q ss_pred HHHHHHHHHHHhhcCchhhhHHhHHHHh
Q 003433 544 VVTYNSIIDAFGRSATTECTVDDVERDL 571 (820)
Q Consensus 544 ~~~~~~ll~~~~~~g~~~~a~~~~~~~l 571 (820)
..+...+.+++.+.|+.++|.++..+++
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 3344444445555555555544444433
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.3e-10 Score=120.05 Aligned_cols=505 Identities=12% Similarity=0.046 Sum_probs=276.0
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003433 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (820)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 234 (820)
+...+..+.+-+..+.++.-|+-+-+++.... ..|.+ ..-++.++.-.|++..|..+...-.-. ..|.......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~-~dp~d---~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~ 88 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT-NDPAD---IYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLA 88 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc-CChHH---HHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHH
Confidence 34567777777777888888887777777665 22322 234677787788888887766554222 2467777777
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 003433 235 ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL 314 (820)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 314 (820)
...+.+..++++|..++..... .-+...|..-=.+. .- ..+.+. ++.. +......+-.-...|....+
T Consensus 89 ~~~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~~~--~l-~~n~~~----~~~~--~~~essic~lRgk~y~al~n 156 (611)
T KOG1173|consen 89 AKCLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDAAN--TL-ELNSAG----EDLM--INLESSICYLRGKVYVALDN 156 (611)
T ss_pred HHHHHHHHHHHHHHHHhcccch---hhcchhhcchhhhc--ee-ccCccc----cccc--ccchhceeeeeeehhhhhcc
Confidence 8888888888888888873311 11111111000000 00 011111 0000 00011111111223445556
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCC----CCCHHHHHHHHHHHHHcCCHHHHHH
Q 003433 315 WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNI----SPNVVTYSTMIDGYAKAGRLDDALN 390 (820)
Q Consensus 315 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~ 390 (820)
.++|...|.+.+.. |+..+.++...-.. .+-.+.+.|+.+..... .-++.....+.....-...-++...
T Consensus 157 ~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~ 230 (611)
T KOG1173|consen 157 REEARDKYKEALLA----DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLT 230 (611)
T ss_pred HHHHHHHHHHHHhc----chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccc
Confidence 67777777766654 33333333222111 11112222222221100 0122222222222211111111111
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003433 391 MFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCV 470 (820)
Q Consensus 391 ~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 470 (820)
.-.+..-.+..-+........+-+...+++.+..++++.+.+.. +++...+-.-|.++...|+..+-..+=.++.+. .
T Consensus 231 r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-y 308 (611)
T KOG1173|consen 231 RNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-Y 308 (611)
T ss_pred cCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-C
Confidence 11111111224455555666666777777777777777777655 555555555566777777777766666666665 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003433 471 SPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSI 550 (820)
Q Consensus 471 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 550 (820)
+....+|-++.--|...|+..+|.+.|.+....+.. =...|-.++..|.-.|..+.|+..|..+-+. +.-...-+--+
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYl 386 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYL 386 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHH
Confidence 445667777777777777788888877776654321 2356777777777777777777777776653 11112222333
Q ss_pred HHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHH
Q 003433 551 IDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCIL 630 (820)
Q Consensus 551 l~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al 630 (820)
.--|.+.++.+-|.+.+.+++...|..+.+..-++.- .| ..+++.+|+
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvv----------------ay----------------~~~~y~~A~ 434 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVV----------------AY----------------TYEEYPEAL 434 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhhe----------------ee----------------hHhhhHHHH
Confidence 3456667777777777777777776654221111000 00 012555677
Q ss_pred HHHHHHHHC--CCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHH
Q 003433 631 GVFQKMHKL--KIKP----NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDE 703 (820)
Q Consensus 631 ~~~~~m~~~--~~~P----d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~ 703 (820)
..|+..+.- .+.+ -..+++.|+.+|.+++++++|+..|++.+...|.+..+..++...+ ..|+++.|+..|.+
T Consensus 435 ~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 435 KYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred HHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 777666521 0111 2345788888888888888888888888888777777655554444 47788888888888
Q ss_pred HhhcCCCcchhHHHHHH
Q 003433 704 VKLMDSSTASAFYNALT 720 (820)
Q Consensus 704 ~~~~~~~~~~~~~~~l~ 720 (820)
++-++|.+ ..+-..|.
T Consensus 515 aL~l~p~n-~~~~~lL~ 530 (611)
T KOG1173|consen 515 ALALKPDN-IFISELLK 530 (611)
T ss_pred HHhcCCcc-HHHHHHHH
Confidence 88888854 33334444
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=3.4e-11 Score=115.77 Aligned_cols=270 Identities=13% Similarity=0.124 Sum_probs=164.1
Q ss_pred CCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCh
Q 003433 169 RGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT----VYAFSALISAYGRSGYC 244 (820)
Q Consensus 169 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~ 244 (820)
+.+.++|+++|..|++.+ +.+..+..+|++.|.+.|.+|.|++++..+.++ +..+ ..+...|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d---~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED---PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC---chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 467888888888888764 444456778888888888888888888888764 1111 34556677788888888
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCHHHHHH
Q 003433 245 QEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDR----ITFNSLLAVCSRGGLWEAARN 320 (820)
Q Consensus 245 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~A~~ 320 (820)
|.|.++|..+.+.+.. -......|+..|.... ++++|++.-+++.+.+-++.. ..|.-|...+....+++.|..
T Consensus 124 DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~tr-eW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 124 DRAEDIFNQLVDEGEF-AEGALQQLLNIYQATR-EWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 8888888888764321 3456667788887777 888888888888776554432 224444444555566777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003433 321 LFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGI 400 (820)
Q Consensus 321 ~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 400 (820)
++.+..+.. +..+..--.+.+.+...|+++.|++.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+..
T Consensus 202 ~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~- 279 (389)
T COG2956 202 LLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN- 279 (389)
T ss_pred HHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc-
Confidence 777766653 122333344556666666777777666666665433223445556666666666666666666666552
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 401 GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGY 449 (820)
Q Consensus 401 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 449 (820)
+....-..+...-....-.+.|...+.+-+.. .|+...+..||+.-
T Consensus 280 -~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 280 -TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYH 325 (389)
T ss_pred -CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhh
Confidence 22222222322222233333444333332222 35555555555543
No 52
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.2e-09 Score=108.40 Aligned_cols=274 Identities=12% Similarity=0.010 Sum_probs=161.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003433 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRV-SYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALL 446 (820)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 446 (820)
|+.....+.+.+...|+.++|+..|++.... .|+.. ....-.-.+.+.|+.+....+...+.... .-....|..-+
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 4555566666666666666666666665544 22221 11111222345566666666666554322 22334444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003433 447 GGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVE 526 (820)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 526 (820)
......++++.|+.+-++.++.. +.+...|..-...+...|+.++|.-.|+......+ -+..+|..|+..|...|++.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHH
Confidence 55556677777777777766542 23444554445666677777777777777765432 26677777777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-HHHhh-cCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHH
Q 003433 527 SAVSLLDEMTKEGIRPNVVTYNSII-DAFGR-SATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKV 604 (820)
Q Consensus 527 ~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~~-~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (820)
||.-+-+...+. +.-+..+.+.+. ..|.- ...-|+|...+++++...|.-. ...+.+...
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~-----------------~AV~~~AEL 447 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYT-----------------PAVNLIAEL 447 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccH-----------------HHHHHHHHH
Confidence 777665555443 222444544442 33322 2233667777777776655321 001111111
Q ss_pred HHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHH
Q 003433 605 FGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGV 681 (820)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~ 681 (820)
.. ..|.+.+++.++++-+. ..||.+..+.|++.+...+.+++|++.|..++.+||++-..
T Consensus 448 ~~---------------~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 448 CQ---------------VEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HH---------------hhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 11 11244557888888776 77898888999999999999999999999999999987543
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=1.6e-10 Score=111.18 Aligned_cols=269 Identities=13% Similarity=0.132 Sum_probs=165.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 003433 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRG-IDQD--IFTYNTLLDAICKGAQMDLAFE 355 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g-~~~~--~~~~~~ll~~~~~~g~~~~A~~ 355 (820)
+.++|.++|.+|.+.... +..+-.+|.+.|.+.|.+|.|+++++.+.+.- ...+ ....-.|..-|...|-+|.|++
T Consensus 50 Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred CcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 457777777777764222 34445566677777777777777777776641 1100 2334456666777777777777
Q ss_pred HHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 356 IMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDR----VSYNTVLSIYAKLGRFEEALLVCKEME 431 (820)
Q Consensus 356 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~----~~~~~li~~~~~~g~~~~A~~~~~~~~ 431 (820)
+|..+.+.+.- -......|+..|-...+|++|++.-+++.+.+-.+.. .-|.-|...+....+++.|..++.+..
T Consensus 129 ~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 77777664321 3445666777777777777777777777766433332 224555555556667777777777776
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003433 432 SSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVL 511 (820)
Q Consensus 432 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 511 (820)
+.+ +..+..-..+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+... ....
T Consensus 208 qa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~ 284 (389)
T COG2956 208 QAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GADA 284 (389)
T ss_pred hhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--CccH
Confidence 655 3444455556677777788888888887777764332345566777777778888887777777776543 3333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 512 YSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAF 554 (820)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 554 (820)
-..+...-....-.+.|...+.+-+.. .|+...+..|++.-
T Consensus 285 ~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 285 ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhh
Confidence 333333333333345555554444442 57777777777754
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.3e-10 Score=120.00 Aligned_cols=489 Identities=9% Similarity=-0.000 Sum_probs=310.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003433 195 LASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG 274 (820)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 274 (820)
-+..+++=+..+.++..|.-+-+++...+ .|+..-..++.++.-.|++++|..+...-.-. ..|..+......++.
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~ 93 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLV 93 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHH
Confidence 34556666667778888888888887655 34444556778888888888888777655321 247777777777777
Q ss_pred cCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003433 275 KGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAF 354 (820)
Q Consensus 275 ~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 354 (820)
+.. ++++|..++.... +.-+...|..-=. ...-..+.+. ++ .++......+-.-...|....+.++|.
T Consensus 94 ~lk-~~~~al~vl~~~~---~~~~~f~yy~~~~--~~~l~~n~~~----~~--~~~~~essic~lRgk~y~al~n~~~ar 161 (611)
T KOG1173|consen 94 KLK-EWDQALLVLGRGH---VETNPFSYYEKDA--ANTLELNSAG----ED--LMINLESSICYLRGKVYVALDNREEAR 161 (611)
T ss_pred HHH-HHHHHHHHhcccc---hhhcchhhcchhh--hceeccCccc----cc--ccccchhceeeeeeehhhhhccHHHHH
Confidence 777 7888877776331 1111111110000 0000011111 00 011111222222344566677888888
Q ss_pred HHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003433 355 EIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGI----GLDRVSYNTVLSIYAKLGRFEEALLVCKEM 430 (820)
Q Consensus 355 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~d~~~~~~li~~~~~~g~~~~A~~~~~~~ 430 (820)
..|.+.... |...+..+...-.. . +-.+.+.|+.+..... .-+......+.....-...-++....-.+.
T Consensus 162 ~~Y~~Al~~----D~~c~Ea~~~lvs~-~-mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~ 235 (611)
T KOG1173|consen 162 DKYKEALLA----DAKCFEAFEKLVSA-H-MLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDE 235 (611)
T ss_pred HHHHHHHhc----chhhHHHHHHHHHH-H-hcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchh
Confidence 888887765 55554443322111 1 1122222333322110 112222222222221111111111111111
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003433 431 ESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVV 510 (820)
Q Consensus 431 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 510 (820)
.-.+...+......-.+-+...+++.+..++++.+.+.. +++...+..-|.++...|+..+-..+-.+|.+..+. ...
T Consensus 236 sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~ 313 (611)
T KOG1173|consen 236 SLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KAL 313 (611)
T ss_pred hhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCc
Confidence 112334567777778888899999999999999998874 666667777777888999988888888888887543 788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCch
Q 003433 511 LYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDK 589 (820)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 589 (820)
+|-+++--|...|+..+|.+.|.+... +.|... .|..+...|+-.|..|+|+..+..|-+..+.....
T Consensus 314 sW~aVg~YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP--------- 382 (611)
T KOG1173|consen 314 SWFAVGCYYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP--------- 382 (611)
T ss_pred chhhHHHHHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch---------
Confidence 999999999999999999999999876 455554 89999999999999999999888777665432100
Q ss_pred hhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHH
Q 003433 590 DVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLL 668 (820)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~ 668 (820)
..+-++- ++..+.++-|-+.|.+... +.| |...++-++-...+.+.+.+|..+|
T Consensus 383 ------~LYlgme-----------------y~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f 437 (611)
T KOG1173|consen 383 ------SLYLGME-----------------YMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYF 437 (611)
T ss_pred ------HHHHHHH-----------------HHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHH
Confidence 0011110 1122355568888888775 778 5677888888888899999999999
Q ss_pred HHHhh----cCCch---hHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhh
Q 003433 669 EELRL----FDNQV---YGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGK 740 (820)
Q Consensus 669 ~~~~~----~~~~~---~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 740 (820)
...++ .+++. ...+++++..+ +.+.+++|+..+++++.+.|++ +.+|.++|-+|...|+++.|...|-+++
T Consensus 438 ~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~-~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 438 QKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD-ASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99873 22222 22344555555 4789999999999999999965 7789999999999999999999998876
Q ss_pred hhhh
Q 003433 741 RRQV 744 (820)
Q Consensus 741 ~~~~ 744 (820)
-...
T Consensus 517 ~l~p 520 (611)
T KOG1173|consen 517 ALKP 520 (611)
T ss_pred hcCC
Confidence 5443
No 55
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.50 E-value=2.4e-08 Score=104.83 Aligned_cols=508 Identities=12% Similarity=0.119 Sum_probs=323.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003433 194 KLASAMISILGRLGKVDLAKNIFETALNEG-YGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDA 272 (820)
Q Consensus 194 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 272 (820)
.++..-+..+.++|++..-+..|+.++..- +.....+|...+......|-.+-++.++++.++. .| ..-+-.|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHHHHH
Confidence 477788888999999999999999997652 1123457888898888999999999999999983 33 346677888
Q ss_pred HHcCCCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHCCCCCC--HHHHHHHH
Q 003433 273 CGKGGVDFKHVVEIFDDMLRNG------VQPDRITFNSLLAVCSRGGLWEA---ARNLFNEMVHRGIDQD--IFTYNTLL 341 (820)
Q Consensus 273 ~~~~g~~~~~A~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~g~~~~---A~~~~~~~~~~g~~~~--~~~~~~ll 341 (820)
+++.+ ++++|.+.+...+... .+.+-..|..+-....+.-+.-. ...++..++.. -+| ...|.+|.
T Consensus 179 L~~~d-~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 179 LAKSD-RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA 255 (835)
T ss_pred HHhcc-chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence 88899 9999999998876431 22344456555555555433322 23334444332 233 46799999
Q ss_pred HHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCC----------------------HHHHHHHHHHHHHCC
Q 003433 342 DAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR----------------------LDDALNMFSEMKFLG 399 (820)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------------------~~~A~~~~~~m~~~~ 399 (820)
+-|.+.|.++.|..+|++.... ...+.-|+.+.+.|+.-.. ++-.+.-|+.+...+
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 9999999999999999998764 2245556666666654221 222223333333221
Q ss_pred -----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 003433 400 -----------IGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK------DAVTYNALLGGYGKQGKYDEVRRMF 462 (820)
Q Consensus 400 -----------~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~ 462 (820)
-+.+...|..-+.. ..|+..+-...|.++++.- .| -...|..+...|-..|+++.|+.+|
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 01222233333322 3466777778888776531 12 2356889999999999999999999
Q ss_pred HHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------C-------CCCHHHHHHHHHHHHHc
Q 003433 463 EQMKADCVSPN---LLTYSTLIDVYSKGGLYKEAMQIFREFKQAG----------L-------KADVVLYSALIDALCKN 522 (820)
Q Consensus 463 ~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------~-------~p~~~~~~~li~~~~~~ 522 (820)
++......+-- ..+|..-..+-.++.+++.|+++.+.....- - ..+...|..+++..-..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 99887532211 3455555566667788999999888765321 0 11345677777777788
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHH
Q 003433 523 GLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQII 602 (820)
Q Consensus 523 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (820)
|-++....+|+++++..+. ++.+......-+-.+.-++++.+++++.+.+++=+... ..|+.-.
T Consensus 491 gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~---------------diW~tYL 554 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY---------------DIWNTYL 554 (835)
T ss_pred ccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH---------------HHHHHHH
Confidence 9999999999999987543 33222222223345667889999998888776532111 1233322
Q ss_pred HHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hccCCHHHHHHHHHHHhh-cCCchh
Q 003433 603 KVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNAC--SRCNSFEDASMLLEELRL-FDNQVY 679 (820)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~--~~~g~~~eA~~~~~~~~~-~~~~~~ 679 (820)
.-|-+ ++|-. +.+.|..+|++.++ |+.|...-+.-|+.+- -.-|....|+.+|+++.. ..+.+-
T Consensus 555 tkfi~----rygg~--------klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~ 621 (835)
T KOG2047|consen 555 TKFIK----RYGGT--------KLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQR 621 (835)
T ss_pred HHHHH----HhcCC--------CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHH
Confidence 22221 22221 56779999999998 7877655444444332 245888899999998753 233322
Q ss_pred HHHHHHHhccccc--hHHHHHHHHHHHhhcCCCcc-hhHHHHHHHHHhhcCchHHHHHHHHHhhhh
Q 003433 680 GVAHGLLMGYRDN--IWVQALSLFDEVKLMDSSTA-SAFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (820)
Q Consensus 680 ~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (820)
..+++++..-... ....-..+|+++++.=|+.. .....-.+++-.+.|..+.|+.++.-+.+.
T Consensus 622 l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 622 LDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 2233332111000 11234566777777656432 344556788889999999999998776543
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.46 E-value=1.8e-09 Score=107.50 Aligned_cols=287 Identities=16% Similarity=0.147 Sum_probs=221.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003433 276 GGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFE 355 (820)
Q Consensus 276 ~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~ 355 (820)
.| ++.+|+++..+..+.+-. ....|..-..+.-..|+.+.+-+++.++.+..-.++..++-+........|+++.|..
T Consensus 97 eG-~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EG-DFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cC-cHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 56 889999988887776544 3445555666777889999999999888886445667778888888888999999998
Q ss_pred HHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHH
Q 003433 356 IMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDR-------VSYNTVLSIYAKLGRFEEALLVCK 428 (820)
Q Consensus 356 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~-------~~~~~li~~~~~~g~~~~A~~~~~ 428 (820)
-++++.+.+.. +.........+|.+.|++.....++.+|.+.+.--|. .+|..+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 88888877654 6777888889999999999999999999888765554 356666666655555665555666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003433 429 EMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD 508 (820)
Q Consensus 429 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 508 (820)
...+. .+.++..-.+++.-+.++|+.++|.++..+..+.+..++.. ..-.+.+-++.+.-++..++-.+.... +
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~-~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPE-D 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCC-C
Confidence 55433 24567777788888999999999999999988887666522 222445667777777777776655433 6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhh
Q 003433 509 VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGK 573 (820)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~ 573 (820)
+..+.+|+..|.+++.+.+|...|+..++ ..|+..+|..+.+++.+.|+.++|.+..++++-.
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 68888999999999999999999998887 4789999999999999999999998887777643
No 57
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.45 E-value=4.3e-08 Score=105.46 Aligned_cols=499 Identities=14% Similarity=0.108 Sum_probs=281.0
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 003433 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDAC---GKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGG 313 (820)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 313 (820)
.+.+.+..++++.-+......+..-+..++-.+..++ ...+ +.+++ .+...+..-.-|....+.+.+..
T Consensus 236 Lw~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~-~~Ee~--~Lllli~es~i~Re~~~d~ilsl----- 307 (799)
T KOG4162|consen 236 LWKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKS-GQEEV--ILLLLIEESLIPRENIEDAILSL----- 307 (799)
T ss_pred HhcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCC-cHHHH--HHHHHHHhhccccccHHHHHHHH-----
Confidence 4455667777777777777666655666655544433 2333 34444 33333332222222222221110
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003433 314 LWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFS 393 (820)
Q Consensus 314 ~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 393 (820)
.-.+.++....+..|..+|..|.-++...|+++.+.+.|++....-+. ....|+.+...|...|.-..|..+++
T Consensus 308 -----m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~ 381 (799)
T KOG4162|consen 308 -----MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLR 381 (799)
T ss_pred -----HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHH
Confidence 012223333334567888888888888899999999999887754332 56678888888888888888888888
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHH-HcCCHHHHHHHHHHHHH--CCC--CCCHHHHHHHHHHHHhc-----------CCHH
Q 003433 394 EMKFLGIGLD-RVSYNTVLSIYA-KLGRFEEALLVCKEMES--SGI--RKDAVTYNALLGGYGKQ-----------GKYD 456 (820)
Q Consensus 394 ~m~~~~~~~d-~~~~~~li~~~~-~~g~~~~A~~~~~~~~~--~~~--~~~~~~~~~li~~~~~~-----------g~~~ 456 (820)
+-....-.|+ ...+...-..|. +.+.++++++.-.+++. .+. ......|..+.-+|... ....
T Consensus 382 ~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ 461 (799)
T KOG4162|consen 382 ESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHK 461 (799)
T ss_pred hhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHH
Confidence 7665432243 333333333333 44667777777666654 111 12345555555555432 2244
Q ss_pred HHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003433 457 EVRRMFEQMKADC-VSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEM 535 (820)
Q Consensus 457 ~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 535 (820)
++.+.+++..+.+ -.|++..| +.--|+..++++.|.+..++..+.+..-+...|..|.-.+...+++.+|+.+.+..
T Consensus 462 kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 462 KSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 6777777776654 23333333 44456667888888888888888765668888888888888888888888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcC
Q 003433 536 TKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQ 615 (820)
Q Consensus 536 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (820)
.+. ..-|......=+..-..-++.++++..+...+........+..-...+. .....+.+... ..+
T Consensus 540 l~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~------------~~~lk~~l~la-~~q 605 (799)
T KOG4162|consen 540 LEE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGK------------LLRLKAGLHLA-LSQ 605 (799)
T ss_pred HHH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhh------------hhhhhcccccC-ccc
Confidence 754 1111111111122223355666666655554443332111110000000 00000000000 000
Q ss_pred CccchhhhhhHHHHHHHHH-HHHH---------CCCC--CC------HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCc
Q 003433 616 GKKENRCRQEILCILGVFQ-KMHK---------LKIK--PN------VVTFSAILNACSRCNSFEDASMLLEELRLFDNQ 677 (820)
Q Consensus 616 ~~~~~~~~~~~~~Al~~~~-~m~~---------~~~~--Pd------~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~ 677 (820)
...+. .-..++..+.+ +... .-.. |+ ...|....+.+.+.++.++|...+.++..+++-
T Consensus 606 ~~~a~---s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l 682 (799)
T KOG4162|consen 606 PTDAI---STSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL 682 (799)
T ss_pred ccccc---hhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh
Confidence 00000 00011111111 1111 1112 22 223667778888999999999888888877776
Q ss_pred hhHHHHHHHhc-cccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHH--HHHHhhhhhhhhh-hhhccc
Q 003433 678 VYGVAHGLLMG-YRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQL--VVLEGKRRQVWEN-VWSESC 753 (820)
Q Consensus 678 ~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~-~~~~~~ 753 (820)
...+.+-.... ..+|.+.+|.+.|..++.+||++ .....+|+.+|.+.|+..-|.. +++.|.+.+..+. .|-. .
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h-v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~-L 760 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH-VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY-L 760 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH-H
Confidence 65554433222 25789999999999999999977 5569999999999998877777 8888887765433 4532 1
Q ss_pred hhhhhcchhHHHHHHHHH
Q 003433 754 LDLHLMSSGAARAMVHAW 771 (820)
Q Consensus 754 ~d~~~~~~g~~~~~~~~w 771 (820)
|.++ ...|+-..|.+-+
T Consensus 761 G~v~-k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 761 GEVF-KKLGDSKQAAECF 777 (799)
T ss_pred HHHH-HHccchHHHHHHH
Confidence 2332 2355555555444
No 58
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.42 E-value=2e-08 Score=110.34 Aligned_cols=293 Identities=13% Similarity=0.065 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003433 421 EEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREF 500 (820)
Q Consensus 421 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 500 (820)
..|+..+.+.++.. ..+..+||+|.-. ...|.+.-|...|-+.+... +-+..+|..+...+.+..+++.|...|...
T Consensus 800 ~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhh
Confidence 45666676666543 4566777766544 56677777777776655542 445667777777778888888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--H--HCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhh
Q 003433 501 KQAGLKADVVLYSALIDALCKNGLVESAVSLLDEM--T--KEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKE 576 (820)
Q Consensus 501 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~--~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~ 576 (820)
....+. |...|-.........|+.-++..+|..- . ..|--++..-|......-..+|+.++-+...++.-.....
T Consensus 877 qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 877 QSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred hhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 775543 5666665555556677777777777762 2 2244556555555555556666666544432221110000
Q ss_pred hhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHC-CCCCCHHHHH----HH
Q 003433 577 SANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKL-KIKPNVVTFS----AI 651 (820)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~-~~~Pd~~~~~----~l 651 (820)
....+.+..+. +..+...... ....+++.+|+++..+.+.. ..+-|..+|+ ..
T Consensus 956 ----l~~yf~~~p~~---~fAy~~~gst---------------lEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~ 1013 (1238)
T KOG1127|consen 956 ----LSYYFLGHPQL---CFAYAANGST---------------LEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDA 1013 (1238)
T ss_pred ----HHHHHhcCcch---hHHHHHHHhH---------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 00000000000 0000000000 01123455555555554210 0111333333 44
Q ss_pred HHHHhccCCHHHHHHHHHHHhh-cCCchhHHHHHHHhccccchHHHHHHHHHHHhhcCCC--cchhHHHHHHHHHhhcCc
Q 003433 652 LNACSRCNSFEDASMLLEELRL-FDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSS--TASAFYNALTDMLWHFGQ 728 (820)
Q Consensus 652 l~a~~~~g~~~eA~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 728 (820)
+..++..|.++.|...+..... .+...-+...+ .+-.++++++.+.|++++.+--. +.+.....+++..+..++
T Consensus 1014 gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~---lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~ 1090 (1238)
T KOG1127|consen 1014 GRLELSLGEFESAKKASWKEWMEVDEDIRGTDLT---LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQ 1090 (1238)
T ss_pred hhhhhhhcchhhHhhhhcccchhHHHHHhhhhHH---HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhccc
Confidence 5566677888877776554321 11111121111 12367899999999999875322 223445567777888899
Q ss_pred hHHHHHHHHHhhhh
Q 003433 729 KRGAQLVVLEGKRR 742 (820)
Q Consensus 729 ~~~A~~~~~~~~~~ 742 (820)
.+.|+..+-+....
T Consensus 1091 k~~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1091 KNDAQFLLFEVKSL 1104 (1238)
T ss_pred chHHHHHHHHHHHh
Confidence 99999887766544
No 59
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.42 E-value=3.7e-08 Score=103.92 Aligned_cols=152 Identities=14% Similarity=0.143 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 003433 169 RGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAI 248 (820)
Q Consensus 169 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 248 (820)
.+++...+++.+.+++..+.+ ..+....+-.+...|+-++|....+..++.++. +.+.|..++-.+....++++|+
T Consensus 20 ~kQYkkgLK~~~~iL~k~~eH---geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPEH---GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCcc---chhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHH
Confidence 455556666655555543222 223334444455555566665555555544332 4455555555555555555565
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 003433 249 SVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVH 327 (820)
Q Consensus 249 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 327 (820)
..|......+.. |...|.-+--.-.+.+ +++.......+..+.... ....|..+..++.-.|+...|..++++..+
T Consensus 96 Kcy~nAl~~~~d-N~qilrDlslLQ~QmR-d~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 96 KCYRNALKIEKD-NLQILRDLSLLQIQMR-DYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred HHHHHHHhcCCC-cHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555543322 3334443333334444 444444444444433111 233344444444445555555555555444
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=1.5e-09 Score=108.15 Aligned_cols=285 Identities=15% Similarity=0.110 Sum_probs=137.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHH
Q 003433 206 LGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVE 285 (820)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~ 285 (820)
.|++..|+++..+..+.+.. .+..|..-+.+.-..|+.+.|-.++.+..+..-+++...+-+........| +...|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~-d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR-DYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC-CchhHHH
Confidence 35555555555554443322 222333334444444555555555555544322334444444444444444 4555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 003433 286 IFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDI-------FTYNTLLDAICKGAQMDLAFEIMA 358 (820)
Q Consensus 286 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~-------~~~~~ll~~~~~~g~~~~A~~~~~ 358 (820)
-.+++.+.+.. +.........+|.+.|++.....++..+.+.|.-.|. .+|+.+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 55555444332 3444444455555555555555555555554433221 244455554444444444444444
Q ss_pred HchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003433 359 EMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKD 438 (820)
Q Consensus 359 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 438 (820)
+.... .+-+...-.+++.-+.+.|+.++|.++.++..+.+..+. ...+ -.+.+-++.+.-++..++-.+.. +.+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 44432 222344444555555556666666666655555543333 1111 12334444444444444443322 334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003433 439 AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFK 501 (820)
Q Consensus 439 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 501 (820)
+..+.+|...|.+.+.+.+|...|+..++. .|+..+|+.+.++|.+.|+..+|.+++++..
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 455555666666666666666666655543 4566666666666666666666666655544
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=3.5e-08 Score=96.21 Aligned_cols=373 Identities=13% Similarity=0.199 Sum_probs=194.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003433 160 TFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYG 239 (820)
Q Consensus 160 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 239 (820)
.++...+.+.|++++|+..|..+...+ ..+..+...+.-++.-.|.+.+|..+-.++.+ +.-.-..|.....
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~---~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlah 132 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKD---DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAH 132 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccC---CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHH
Confidence 445666666677777776666655532 22233555555556666666666666555432 2222333444444
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhCCCHHH
Q 003433 240 RSGYCQEAISVFNSMKRYNLKPNLVTYNAVID-ACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLA-VCSRGGLWEA 317 (820)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~ 317 (820)
+.++-++-..+-+.+.. ....--+|.. .|.+. .+.+|+++|.+.+.. .|+-...|.-+. +|.+..-++-
T Consensus 133 klndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~--HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydv 203 (557)
T KOG3785|consen 133 KLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRM--HYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDV 203 (557)
T ss_pred HhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHH--HHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhh
Confidence 55554444444444332 1111111111 12332 466777777766654 233333443333 3456666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHH
Q 003433 318 ARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAG-----RLDDALNMF 392 (820)
Q Consensus 318 A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-----~~~~A~~~~ 392 (820)
+.++++-.++. ++.+....|..+....+.=+-..|.+-.+++.+.+-. .| -.+.-.++.+ .-+.|++++
T Consensus 204 sqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~----~~-~f~~~l~rHNLVvFrngEgALqVL 277 (557)
T KOG3785|consen 204 SQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ----EY-PFIEYLCRHNLVVFRNGEGALQVL 277 (557)
T ss_pred HHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc----cc-hhHHHHHHcCeEEEeCCccHHHhc
Confidence 66666665553 2333444454444444433333333334443332110 01 1222333322 345566665
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHH
Q 003433 393 SEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQG-------KYDEVRRMFEQM 465 (820)
Q Consensus 393 ~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~m 465 (820)
--+.+. -| ..-..|+-.|.+.+++.+|..+.+++. +.++.-|-.-.-.++..| .+.-|.+.|...
T Consensus 278 P~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlV 349 (557)
T KOG3785|consen 278 PSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLV 349 (557)
T ss_pred hHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHh
Confidence 554432 22 233445667888899999988877664 333333322222233333 345566666665
Q ss_pred HHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003433 466 KADCVSPNLL-TYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNV 544 (820)
Q Consensus 466 ~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 544 (820)
-+++..-|.. --.++...+.-..++++.+..++.+...-...|...+| +..+++..|++.+|.++|-+.....++ |.
T Consensus 350 G~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~ 427 (557)
T KOG3785|consen 350 GESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NK 427 (557)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hh
Confidence 4444333322 23345555666667888888887776654343444444 778888899999999988877654444 55
Q ss_pred HHHHHHH-HHHhhcCchhhhHH
Q 003433 545 VTYNSII-DAFGRSATTECTVD 565 (820)
Q Consensus 545 ~~~~~ll-~~~~~~g~~~~a~~ 565 (820)
.+|.+++ .+|.++++.+.|.+
T Consensus 428 ~~Y~s~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 428 ILYKSMLARCYIRNKKPQLAWD 449 (557)
T ss_pred HHHHHHHHHHHHhcCCchHHHH
Confidence 6665544 46677777665543
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.39 E-value=2.8e-10 Score=128.26 Aligned_cols=149 Identities=10% Similarity=-0.052 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 003433 209 VDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFD 288 (820)
Q Consensus 209 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~ 288 (820)
+++|...++++++.++. +..++..+..++...|++++|...|++..+.++. +...|..+...+...| ++++|+..++
T Consensus 320 ~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G-~~~eAi~~~~ 396 (553)
T PRK12370 320 MIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAG-QLEEALQTIN 396 (553)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 44555555555544322 4444445555555555555555555555443211 2334444444444455 4555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHch
Q 003433 289 DMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMP 361 (820)
Q Consensus 289 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 361 (820)
++++.... +...+..++..+...|++++|+..++++.+...+.+...+..+..+|...|++++|.+.++++.
T Consensus 397 ~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 397 ECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 55443222 1111222222333344455555555444433211123334444444444555555555544443
No 63
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.39 E-value=9.1e-08 Score=103.03 Aligned_cols=430 Identities=13% Similarity=0.009 Sum_probs=267.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHH-H
Q 003433 294 GVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVT-Y 372 (820)
Q Consensus 294 g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~ 372 (820)
.+.-|...|..|.-+....|+++.+.+.|++....- -.....|+.+...|...|.-..|..++++.......|+..+ +
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 345678888888888999999999999999988753 23567899999999999999999999998776543344333 3
Q ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCCCC
Q 003433 373 STMIDGY-AKAGRLDDALNMFSEMKFL--GI--GLDRVSYNTVLSIYAKL-----------GRFEEALLVCKEMESSGIR 436 (820)
Q Consensus 373 ~~li~~~-~~~g~~~~A~~~~~~m~~~--~~--~~d~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~ 436 (820)
-..-..| .+.+.+++++++-.+.... +. ......|..+.-+|... ....++++.+++..+.+ +
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~ 475 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-P 475 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-C
Confidence 2222333 3467788888887777662 11 22334555555555432 12457788888887766 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003433 437 KDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALI 516 (820)
Q Consensus 437 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 516 (820)
-|+.+...+.--|+..++++.|.+..++.++.+-..+...|..|.-.+...+++.+|+.+.+...+.-. -|......-+
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~-~N~~l~~~~~ 554 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG-DNHVLMDGKI 554 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh-hhhhhchhhh
Confidence 444444445556888899999999999999886677899999999999999999999999988765421 1222222233
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHH--HHHHHH----hhcCchhhhHHhHHHHhhhhhh---hhhhhhhhc
Q 003433 517 DALCKNGLVESAVSLLDEMTKE--GIRPNVVTYN--SIIDAF----GRSATTECTVDDVERDLGKQKE---SANLDAMCS 585 (820)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~--~ll~~~----~~~g~~~~a~~~~~~~l~~~~~---~~~~~~~~~ 585 (820)
..-..-|+.++|+.....++.. ...+-..+.. .+.+.. ...++..+++....++...... ..+....+-
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 3444567777877777766542 0000000000 000000 0111222222222222211100 000000000
Q ss_pred -cCchhhhh-----hccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc
Q 003433 586 -QDDKDVQE-----AGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPN-VVTFSAILNACSRC 658 (820)
Q Consensus 586 -~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd-~~~~~~ll~a~~~~ 658 (820)
....+... --..|..+.+.|.+. +..++|.-.+.+... +.|- ...|...+..+-..
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~---------------~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~ 697 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLS---------------GNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVK 697 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhc---------------CCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHH
Confidence 00000000 000111112222211 123345545555443 4453 44566777778888
Q ss_pred CCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccch--HHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHH
Q 003433 659 NSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNI--WVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLV 735 (820)
Q Consensus 659 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 735 (820)
|.++||.+.|..++..||++..+...+...+ +.|+ ..++..+...+++.||.+ ...|..||.++.+.|+.++|.+.
T Consensus 698 ~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n-~eaW~~LG~v~k~~Gd~~~Aaec 776 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLN-HEAWYYLGEVFKKLGDSKQAAEC 776 (799)
T ss_pred HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHccchHHHHHH
Confidence 9999999999999999999988877665433 3444 444555999999999955 77799999999999999999999
Q ss_pred HHHhhhhhh
Q 003433 736 VLEGKRRQV 744 (820)
Q Consensus 736 ~~~~~~~~~ 744 (820)
|..+.+...
T Consensus 777 f~aa~qLe~ 785 (799)
T KOG4162|consen 777 FQAALQLEE 785 (799)
T ss_pred HHHHHhhcc
Confidence 998876543
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.35 E-value=3.7e-08 Score=103.86 Aligned_cols=407 Identities=15% Similarity=0.132 Sum_probs=255.5
Q ss_pred hHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003433 141 SLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETAL 220 (820)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 220 (820)
.++.+|.. .+...++.....-.+...|+-++|.......++.+.. ....|..++-.+....++++|++.|..++
T Consensus 29 ~~~~iL~k---~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~---S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl 102 (700)
T KOG1156|consen 29 LIKQILKK---FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK---SHVCWHVLGLLQRSDKKYDEAIKCYRNAL 102 (700)
T ss_pred HHHHHHHh---CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc---cchhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 34444443 3334566666555667788999999999988887543 34588888888888899999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC-CCCCH
Q 003433 221 NEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNG-VQPDR 299 (820)
Q Consensus 221 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g-~~p~~ 299 (820)
+.+. .|...|.-|.-.-++.|+++...+.-..+.+.... ....|..+..+..-.| +...|..++++..+.. -.|+.
T Consensus 103 ~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g-~y~~A~~il~ef~~t~~~~~s~ 179 (700)
T KOG1156|consen 103 KIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLG-EYKMALEILEEFEKTQNTSPSK 179 (700)
T ss_pred hcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCCCH
Confidence 8764 37888888877778888888888887777764322 4567777777777788 8999999999988764 24666
Q ss_pred HHHHHHHHH------HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHH
Q 003433 300 ITFNSLLAV------CSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYS 373 (820)
Q Consensus 300 ~~~~~ll~~------~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 373 (820)
..|.-.... ..+.|.++.|.+.+...... +......-..-...+.+.+++++|..++..++... ||.+.|.
T Consensus 180 ~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy 256 (700)
T KOG1156|consen 180 EDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYY 256 (700)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHH
Confidence 666544433 34567777777776655443 22223344556778888999999999999988874 5666555
Q ss_pred HH-HHHHHHcCCHHHHH-HHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003433 374 TM-IDGYAKAGRLDDAL-NMFSEMKFLGIGLDRVSYNTV-LSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYG 450 (820)
Q Consensus 374 ~l-i~~~~~~g~~~~A~-~~~~~m~~~~~~~d~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 450 (820)
.. ..++.+-.+.-++. .+|....+. .|-...-.-+ ++......-.+..-+++..+.+.|+++ ++..+...|-
T Consensus 257 ~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk 331 (700)
T KOG1156|consen 257 EGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYK 331 (700)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHh
Confidence 44 44444333444444 566655544 2221111111 111111122333444556667777653 3334444443
Q ss_pred hcCCHHHHHHHHHHHHH----CC----------CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHH
Q 003433 451 KQGKYDEVRRMFEQMKA----DC----------VSPNLLTY--STLIDVYSKGGLYKEAMQIFREFKQAGLKAD-VVLYS 513 (820)
Q Consensus 451 ~~g~~~~A~~~~~~m~~----~~----------~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~ 513 (820)
.-...+-..++.-.+.. .| -+|....| -.++..|-+.|+++.|....+..++. .|+ +..|.
T Consensus 332 ~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~ 409 (700)
T KOG1156|consen 332 DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYL 409 (700)
T ss_pred chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHH
Confidence 22222211122222211 11 14444444 45677778888899998888888775 344 34555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhH
Q 003433 514 ALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDV 567 (820)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 567 (820)
.-.+.+..+|++++|..++++..+.+ .+|...=.--..-..+..+.++|.++.
T Consensus 410 ~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~ 462 (700)
T KOG1156|consen 410 VKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVL 462 (700)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHH
Confidence 55678888889999998888888753 335444435555556777777776653
No 65
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=5.7e-08 Score=94.76 Aligned_cols=386 Identities=13% Similarity=0.090 Sum_probs=244.6
Q ss_pred ccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 003433 151 FKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYA 230 (820)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 230 (820)
...+..+.+..+.-.+.-.|.+.+|.++-..+.+. .--...|...-.+.|+-++-..+.+.+.. +..-
T Consensus 86 ~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~-------pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~Ed 153 (557)
T KOG3785|consen 86 KDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKT-------PLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLED 153 (557)
T ss_pred cCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCC-------hHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHH
Confidence 34445566777777777788888888876655332 22334566666788888888777777654 2344
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 231 FSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVID-ACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVC 309 (820)
Q Consensus 231 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 309 (820)
..+|..+.-..-.+++|++++.+....+ |+-...|.-+. +|.+.. -++-+.+++.-.++. +.-+....|..+...
T Consensus 154 qLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlD-Yydvsqevl~vYL~q-~pdStiA~NLkacn~ 229 (557)
T KOG3785|consen 154 QLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLD-YYDVSQEVLKVYLRQ-FPDSTIAKNLKACNL 229 (557)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcc-hhhhHHHHHHHHHHh-CCCcHHHHHHHHHHH
Confidence 5567776666678999999999998743 56666666554 456777 788888888877765 222344444444333
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCC
Q 003433 310 SRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKG-----AQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR 384 (820)
Q Consensus 310 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 384 (820)
.+.=.-..|.+-...+.+.+-.. | -.+.-+++. .+-+.|++++-.+.+. -...--.|+-.|.+.++
T Consensus 230 fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~d 300 (557)
T KOG3785|consen 230 FRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQND 300 (557)
T ss_pred hhhhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeeccccc
Confidence 33322233444445554443111 1 123333443 4567888888776654 33445567778999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHH-----HHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 003433 385 LDDALNMFSEMKFLGIGLDRVSYNTV-----LSIYAKLGRFEEALLVCKEMESSGIRKDA-VTYNALLGGYGKQGKYDEV 458 (820)
Q Consensus 385 ~~~A~~~~~~m~~~~~~~d~~~~~~l-----i~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A 458 (820)
+.+|..+.+++.-. .|-......+ ..-......+.-|.+.|+-.-+.+..-|. .--.++...+.-..++++.
T Consensus 301 VqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddV 378 (557)
T KOG3785|consen 301 VQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDV 378 (557)
T ss_pred HHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHH
Confidence 99999998876422 2322222222 22222223456677777666555544333 2344566677777889999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 459 RRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYS-ALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 459 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
+.+++.+...-...|.+.+| +.++++..|++.+|.++|-.+....++ |..+|. .|.++|.++++.+.|+.++-++-.
T Consensus 379 l~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t 456 (557)
T KOG3785|consen 379 LTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT 456 (557)
T ss_pred HHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC
Confidence 99999888775555666655 889999999999999999888765555 555664 556788999999999988776643
Q ss_pred CCCCCCHHHHHH-HHHHHhhcCchhhhHHhHH
Q 003433 538 EGIRPNVVTYNS-IIDAFGRSATTECTVDDVE 568 (820)
Q Consensus 538 ~g~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~ 568 (820)
..+..+... +.+-|.+.+.+--|-+.+.
T Consensus 457 ---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd 485 (557)
T KOG3785|consen 457 ---PSERFSLLQLIANDCYKANEFYYAAKAFD 485 (557)
T ss_pred ---chhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 224444444 4446777776654444433
No 66
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.34 E-value=9.7e-09 Score=111.50 Aligned_cols=246 Identities=16% Similarity=0.161 Sum_probs=146.9
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCC
Q 003433 218 TALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQP 297 (820)
Q Consensus 218 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p 297 (820)
.+...|+.|+.++|..+|.-||..|+.+.|- +|.-|.-....-+...++.++.+....+ +.+.+. .|
T Consensus 15 ~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~An-d~Enpk-----------ep 81 (1088)
T KOG4318|consen 15 LHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEAN-DAENPK-----------EP 81 (1088)
T ss_pred HHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccc-cccCCC-----------CC
Confidence 3444455555566666666666666665555 5555554444445555555555555555 443332 34
Q ss_pred CHHHHHHHHHHHHhCCCHHH---HHHHHHHHHH----CC-----------------CCCCHHHHHHHHHHHHhcCCHHHH
Q 003433 298 DRITFNSLLAVCSRGGLWEA---ARNLFNEMVH----RG-----------------IDQDIFTYNTLLDAICKGAQMDLA 353 (820)
Q Consensus 298 ~~~~~~~ll~~~~~~g~~~~---A~~~~~~~~~----~g-----------------~~~~~~~~~~ll~~~~~~g~~~~A 353 (820)
-..||..|..+|...||+.. .++.++.+.. .| .-||. ...+....-.|-++.+
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGLWAQL 158 (1088)
T ss_pred chhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHHHHHH
Confidence 55556666666665555433 2221111111 11 11222 2234445556677777
Q ss_pred HHHHHHchhCCCC-CCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 354 FEIMAEMPAKNIS-PNVVTYSTMIDGYAKA-GRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEME 431 (820)
Q Consensus 354 ~~~~~~m~~~g~~-p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~ 431 (820)
++++..+....-. |..+ .+.-+... ..+++-..+.+...+ .++..+|..+++.-...|+++.|..++.+|.
T Consensus 159 lkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 7777766543111 1111 12222222 223333333333322 5899999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003433 432 SSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGL 489 (820)
Q Consensus 432 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 489 (820)
+.|++.+..-|-.|+-+ .++..-+..+++-|.+.|+.|+..|+..-+..+.+.|.
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99998888777777655 78888888899999999999999999887777776554
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=1.7e-09 Score=104.02 Aligned_cols=226 Identities=9% Similarity=0.052 Sum_probs=108.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 241 (820)
+.+.|.+.|.+.+|.+.|+..+.+.. .. .+|..|..+|.+..+...|+.+|.+.++. ++-|+.....+.+.+-..
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~~--~~--dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQFP--HP--DTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcCC--ch--hHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 55555555555555555555554421 11 14444555555555555555555555443 233444444445555555
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 003433 242 GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNL 321 (820)
Q Consensus 242 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 321 (820)
++.++|.++|+...+... -|+....++..+|.-.+ +.+-|+.+|+++++.|+. +...|+.+.-+|.-.+++|.++..
T Consensus 304 ~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~-~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDN-NPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCC-ChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 555555555555554321 13334444444444444 555555555555555554 445555555555555555555555
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 322 FNEMVHRGIDQD--IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK 396 (820)
Q Consensus 322 ~~~~~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 396 (820)
|++....--.++ ..+|..|.......|++..|.+.|+-....+.. +...++.|.-.-.+.|++++|..++....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 555544322222 234444444444555555555555544443222 33444554444455555555555554443
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.32 E-value=1.3e-09 Score=109.12 Aligned_cols=199 Identities=15% Similarity=0.123 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 334 IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSI 413 (820)
Q Consensus 334 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~ 413 (820)
...+..+...|...|++++|++.+++..+... .+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 34455555555555666666666555554321 134445555555555555555555555555443 2333444455555
Q ss_pred HHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003433 414 YAKLGRFEEALLVCKEMESSGI-RKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKE 492 (820)
Q Consensus 414 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 492 (820)
+...|++++|.+.+++..+... ......+..+...+...|++++|...|.+..... +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555543211 1122334444445555555555555555544432 2223344444455555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 493 AMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (820)
Q Consensus 493 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (820)
|...+++..+.. ..+...+..++..+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555555544431 2233444444444444555555554444443
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=7.9e-10 Score=124.65 Aligned_cols=250 Identities=13% Similarity=0.058 Sum_probs=151.9
Q ss_pred ChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH---------cCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 003433 243 YCQEAISVFNSMKRYNLKPN-LVTYNAVIDACG---------KGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG 312 (820)
Q Consensus 243 ~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~---------~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 312 (820)
.+++|+++|++..+. .|+ ...|..+..++. ..+ ++++|...++++++.... +...+..+..++...
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~-~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQN-AMIKAKEHAIKATELDHN-NPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccch-HHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHc
Confidence 456666666666653 232 333433333322 223 467788888877776443 566677777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003433 313 GLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMF 392 (820)
Q Consensus 313 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 392 (820)
|++++|...|+++++.. +.+...+..+...+...|++++|+..+++..+.... +...+..++..+...|++++|+..+
T Consensus 352 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 88888888888877764 334666777777788888888888888887776433 2223334444566677888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CC
Q 003433 393 SEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC-VS 471 (820)
Q Consensus 393 ~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~ 471 (820)
+++.+...+-+...+..+..+|...|+.++|...+.++.... +.+....+.+...|...| ++|...++.+.+.. ..
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 777655312234456667777778888888888887765432 233444555666666666 46666666655421 11
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003433 472 PNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAG 504 (820)
Q Consensus 472 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 504 (820)
+....+ +-..|.-.|+-+.+..+ +++.+.+
T Consensus 507 ~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 222222 33344445666666555 6666543
No 70
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=7.4e-08 Score=100.56 Aligned_cols=457 Identities=16% Similarity=0.161 Sum_probs=244.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYG-- 239 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-- 239 (820)
=+..+...+++++|++...+++... +++..++..-+.++.+.++|++|+.+.+.-.... ..+++. +=.+||
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~---pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~---fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV---PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFF---FEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC---CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhh---HHHHHHHH
Confidence 3455677889999999999888774 4445566777777889999999986555432210 011111 234444
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHH
Q 003433 240 RSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQP-DRITFNSLLAVCSRGGLWEAA 318 (820)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A 318 (820)
+.++.|+|+..++.+.. -+..+...-...+.+.+ ++++|+.+|+.+.+.+.+- |...-..++.+- -.-.+
T Consensus 91 rlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~-~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~ 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLE-RYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQV 161 (652)
T ss_pred HcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhH
Confidence 67889999988883332 13334555556677888 8999999999998775431 111111222111 11111
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhC-------C------CCCCH-HHHHHHHHHHHHcCC
Q 003433 319 RNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK-------N------ISPNV-VTYSTMIDGYAKAGR 384 (820)
Q Consensus 319 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-------g------~~p~~-~~~~~li~~~~~~g~ 384 (820)
. +.+..... ...+-..+......+...|++.+|+++++...+. + +.-+. ..-..|.-.+...|+
T Consensus 162 ~-~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 162 Q-LLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred H-HHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 1 12222111 1112222333455677789999999999887221 1 00011 122335556778899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHcCCHH-HHHHHHHHHHH-----------CCCCCCHHHHHHHHHH
Q 003433 385 LDDALNMFSEMKFLGIGLDRVS----YNTVLSIYAKLGRFE-EALLVCKEMES-----------SGIRKDAVTYNALLGG 448 (820)
Q Consensus 385 ~~~A~~~~~~m~~~~~~~d~~~----~~~li~~~~~~g~~~-~A~~~~~~~~~-----------~~~~~~~~~~~~li~~ 448 (820)
.++|..++...++.. .+|... -|.|+.+-....-++ .++..++.... ..-.....--+.++..
T Consensus 240 t~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred hHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988875 455432 233332211111111 12222222111 0000111111233333
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-h-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003433 449 YGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYS-K-GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVE 526 (820)
Q Consensus 449 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 526 (820)
|. +..+.+.++-..... ..|... +.+++.... . .....+|.+++...-+....-..++.-.++.....+|+++
T Consensus 319 ~t--nk~~q~r~~~a~lp~--~~p~~~-~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 319 FT--NKMDQVRELSASLPG--MSPESL-FPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred Hh--hhHHHHHHHHHhCCc--cCchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 32 334444444443322 233333 333333322 2 2246677777777766544433556666677778899999
Q ss_pred HHHHHHH--------HHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccch
Q 003433 527 SAVSLLD--------EMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTD 598 (820)
Q Consensus 527 ~A~~~~~--------~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (820)
.|++++. ...+.+..|- +...+...+.+.++.+.|..++.+++.+...+
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~--------------------- 450 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQ--------------------- 450 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHh---------------------
Confidence 9999888 4444443333 44455555666666666665555544432221
Q ss_pred HHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCc
Q 003433 599 NQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFDNQ 677 (820)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~ 677 (820)
.. ..+. ..++.-+..--.+.|+-++|..+++++.+.+|.
T Consensus 451 --------------------------------------~t--~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~ 490 (652)
T KOG2376|consen 451 --------------------------------------QT--GSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPN 490 (652)
T ss_pred --------------------------------------cc--cchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCc
Confidence 10 0000 011111111122447888888888888887887
Q ss_pred hhHHHHHHHhccccchHHHHHHHHHHHh
Q 003433 678 VYGVAHGLLMGYRDNIWVQALSLFDEVK 705 (820)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 705 (820)
+..++..++.+|..-+.+.|+.+-+++.
T Consensus 491 d~~~l~~lV~a~~~~d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 491 DTDLLVQLVTAYARLDPEKAESLSKKLP 518 (652)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHhhcCC
Confidence 7777777777776667777777766543
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.31 E-value=1.5e-09 Score=108.70 Aligned_cols=199 Identities=14% Similarity=0.059 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHH
Q 003433 299 RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDG 378 (820)
Q Consensus 299 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 378 (820)
...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|++.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3445555555555555555555555555432 223445555555555555555555555555544322 33445555555
Q ss_pred HHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003433 379 YAKAGRLDDALNMFSEMKFLGI-GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDE 457 (820)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~~~-~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 457 (820)
|...|++++|.+.+++...... ......+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555554311 1122344445555555555555555555555433 2334455555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003433 458 VRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFK 501 (820)
Q Consensus 458 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 501 (820)
|...+++..+. .+.+...+..++..+...|+.++|..+++.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555555544 23334444445555555555555555555443
No 72
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.31 E-value=1.7e-09 Score=117.22 Aligned_cols=278 Identities=15% Similarity=0.156 Sum_probs=191.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 003433 249 SVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHR 328 (820)
Q Consensus 249 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 328 (820)
.++-.+...|+.||-+||..+|.-|+..| +.+.|- +|.-|.-.....+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~g-dieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKG-DIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccC-CCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 34556667788888888888888888888 777776 7777776666667778888888888888777665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHH
Q 003433 329 GIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFL-GIGLDRVSY 407 (820)
Q Consensus 329 g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~d~~~~ 407 (820)
.|-..+|..|..+|.+.|++.. |+...+ ..-.++..+...|.......++..+.-. +.-||..+
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n- 144 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN- 144 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH-
Confidence 4667888888888888888766 332222 1223344455566666655655554322 23344433
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003433 408 NTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQ-GKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK 486 (820)
Q Consensus 408 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 486 (820)
.+....-.|.++.+++++..+..... ..+... +++-+... ..+++-..+.+...+ .++..+|..++..-..
T Consensus 145 --~illlv~eglwaqllkll~~~Pvsa~-~~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~ala 216 (1088)
T KOG4318|consen 145 --AILLLVLEGLWAQLLKLLAKVPVSAW-NAPFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALA 216 (1088)
T ss_pred --HHHHHHHHHHHHHHHHHHhhCCcccc-cchHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHh
Confidence 33444566778888777766532211 111111 23322222 233443333333333 5899999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhh
Q 003433 487 GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECT 563 (820)
Q Consensus 487 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 563 (820)
.|+.+.|..++.+|.+.|+..+..-|..|+-+ .|...-+..+++-|.+.|+.|+..|+.-.+-.+..+|....+
T Consensus 217 ag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~ 290 (1088)
T KOG4318|consen 217 AGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG 290 (1088)
T ss_pred cCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc
Confidence 99999999999999999998888777777655 888889999999999999999999999888888877765444
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=2e-09 Score=115.24 Aligned_cols=248 Identities=20% Similarity=0.231 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CC
Q 003433 405 VSYNTVLSIYAKLGRFEEALLVCKEMESS-----GI-RKDAV-TYNALLGGYGKQGKYDEVRRMFEQMKAD-----C-VS 471 (820)
Q Consensus 405 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~ 471 (820)
.+...|..+|...|+++.|..+++..++. |. .+.+. ..+.+...|...+++++|..+|++++.. | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555777777777777777777766542 10 12222 2233566677777777777777776542 1 11
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CC
Q 003433 472 PN-LLTYSTLIDVYSKGGLYKEAMQIFREFKQA-----GL-KADV-VLYSALIDALCKNGLVESAVSLLDEMTKE---GI 540 (820)
Q Consensus 472 p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~ 540 (820)
|. ..+++.|...|.+.|++++|...+++..+. |. .+.+ ..++.++..|+..+++++|..++++..+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 11 345666666777777777776666655431 11 1122 23445556667777777777777765542 11
Q ss_pred CCCH----HHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCC
Q 003433 541 RPNV----VTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQG 616 (820)
Q Consensus 541 ~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (820)
.++. .+++.|...|.+.|++++|.+++++++.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~-------------------------------------------- 395 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ-------------------------------------------- 395 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH--------------------------------------------
Confidence 1221 2566666666666666666655444332
Q ss_pred ccchhhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhccccchHH
Q 003433 617 KKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWV 695 (820)
Q Consensus 617 ~~~~~~~~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (820)
..++... +..+ ....++.|..+|.+.+..++|.++|.+...+
T Consensus 396 ---------------~~~~~~~-~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i--------------------- 438 (508)
T KOG1840|consen 396 ---------------ILRELLG-KKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI--------------------- 438 (508)
T ss_pred ---------------HHHhccc-CcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH---------------------
Confidence 2222211 1122 2456789999999999999999999887621
Q ss_pred HHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHh
Q 003433 696 QALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEG 739 (820)
Q Consensus 696 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 739 (820)
. +..-.+..+....|-.|+-+|.+.|++++|.++....
T Consensus 439 -----~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 439 -----M-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred -----H-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 1 1111111123456888999999999999999997654
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=4.3e-10 Score=108.13 Aligned_cols=245 Identities=11% Similarity=0.031 Sum_probs=184.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLG 447 (820)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 447 (820)
|-.--+.|.++|.+.|.+.+|.+.|+...+. .|-..||..|-.+|.+..+.+.|+.+|.+-++.- +-|+....-+..
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHH
Confidence 3333467889999999999999999988877 6777888889999999999999999998887653 344444455677
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003433 448 GYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVES 527 (820)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 527 (820)
.+...++.++|.++|+...+.. +.++.....+...|.-.++.+.|+++++++++.|+. +...|+.+.-+|.-.++++-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 8888899999999999988763 556777777888888889999999999999999986 88888888888888999999
Q ss_pred HHHHHHHHHHCCCCCCH--HHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHH
Q 003433 528 AVSLLDEMTKEGIRPNV--VTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVF 605 (820)
Q Consensus 528 A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (820)
++..|++.+..--.|+. .+|..|.......|++.
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~n-------------------------------------------- 412 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFN-------------------------------------------- 412 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchH--------------------------------------------
Confidence 99999888765333443 24444443333333332
Q ss_pred HHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHH
Q 003433 606 GQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHG 684 (820)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~ 684 (820)
-|...|+-.+.. +| +...++.|.-.-.+.|++++|+.++..+....|.-+.+..+
T Consensus 413 ----------------------lA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~N 468 (478)
T KOG1129|consen 413 ----------------------LAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTN 468 (478)
T ss_pred ----------------------HHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccc
Confidence 344556555442 23 35567888777788999999999999988877776665544
Q ss_pred H
Q 003433 685 L 685 (820)
Q Consensus 685 ~ 685 (820)
+
T Consensus 469 l 469 (478)
T KOG1129|consen 469 L 469 (478)
T ss_pred e
Confidence 3
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.8e-07 Score=93.24 Aligned_cols=269 Identities=11% Similarity=0.069 Sum_probs=132.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHH
Q 003433 298 DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQD-IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMI 376 (820)
Q Consensus 298 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 376 (820)
|+.....+.+.+...|+.++|+..|++....+ |+ +.......-.+.+.|+++....+...+.... +-....|-.-.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 44455555666666666666666666655432 21 1122222233345555555555554444321 00222233333
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003433 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYD 456 (820)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 456 (820)
......++++.|+.+-++.++.. +.+...|..-...+...|+.++|.-.|+...... +-+...|.-|+..|...|++.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHH
Confidence 33344555666666555555443 2233334333445555566666666665554432 345556666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 003433 457 EVRRMFEQMKADCVSPNLLTYSTLI-DVYS-KGGLYKEAMQIFREFKQAGLKADV-VLYSALIDALCKNGLVESAVSLLD 533 (820)
Q Consensus 457 ~A~~~~~~m~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~ 533 (820)
+|..+-+..... ++.+..+...+. ..+. ....-++|.++++..+.. .|+. ...+.+...+...|..++++.+++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 665555443332 223334443332 2222 122235566666555543 2332 233444555556666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhh
Q 003433 534 EMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKE 576 (820)
Q Consensus 534 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~ 576 (820)
+.+. ..||....+.|.+.+.....+++|.+.|..++..+|.
T Consensus 463 ~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 463 KHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 6555 3556666666666666666666666655555555443
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.27 E-value=3.9e-07 Score=99.29 Aligned_cols=263 Identities=18% Similarity=0.200 Sum_probs=124.9
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (820)
+........+...|++++|++.++..... ..+...+....+..+.+.|+.++|..+|..+++.++. |..-|..|..
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~---I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~ 80 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQ---ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEE 80 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhh---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHH
Confidence 33444556666777777777777655444 2444556666777777777777777777777776543 4444555555
Q ss_pred HHHhc-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003433 237 AYGRS-----GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFK-HVVEIFDDMLRNGVQPDRITFNSLLAVCS 310 (820)
Q Consensus 237 ~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~-~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 310 (820)
+..-. ...+...++|+++...- |.......+.-.+.... .+. .+..++..++..|++ .+|+.|-..|.
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~-~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~ 154 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGD-EFKERLDEYLRPQLRKGVP---SLFSNLKPLYK 154 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHH-HHHHHHHHHHHHHHhcCCc---hHHHHHHHHHc
Confidence 54222 23455566666665432 33333333322222222 232 333444555555543 23444444444
Q ss_pred hCCCHHHHHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHH
Q 003433 311 RGGLWEAARNLFNEMVHR----G----------IDQDI--FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYST 374 (820)
Q Consensus 311 ~~g~~~~A~~~~~~~~~~----g----------~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 374 (820)
.....+-..+++..+... + -+|.. .++..|...|...|++++|++++++.++.... .+..|..
T Consensus 155 d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~ 233 (517)
T PF12569_consen 155 DPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMT 233 (517)
T ss_pred ChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHH
Confidence 444444444444443321 0 01111 22233344444444444444444444443211 1334444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 375 MIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEME 431 (820)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~ 431 (820)
....|-+.|++++|.+.++.....+ .-|...-+..+..+.+.|++++|.+++....
T Consensus 234 KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft 289 (517)
T PF12569_consen 234 KARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFT 289 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhc
Confidence 4444444444444444444444443 2344444444444444444444444444443
No 77
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.26 E-value=1.4e-08 Score=110.31 Aligned_cols=292 Identities=15% Similarity=0.175 Sum_probs=213.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----
Q 003433 199 MISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG---- 274 (820)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~---- 274 (820)
...++...|++++|++.++...+. +.............+.+.|+.++|..+|..+++.+ |+...|...+..+.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 355678899999999999887664 44456777888999999999999999999999865 56665555444443
Q ss_pred --cCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003433 275 --KGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW-EAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMD 351 (820)
Q Consensus 275 --~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 351 (820)
... +.+...++|+++...- |.......+.-.+.....+ ..+..++..+..+|++ .+++.|-..|....+.+
T Consensus 87 ~~~~~-~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 87 QLSDE-DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA 160 (517)
T ss_pred ccccc-cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence 122 4688889999987753 3333333332222222233 3455667777888864 45677777777666666
Q ss_pred HHHHHHHHchhC--------------CCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 003433 352 LAFEIMAEMPAK--------------NISPNV--VTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD-RVSYNTVLSIY 414 (820)
Q Consensus 352 ~A~~~~~~m~~~--------------g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d-~~~~~~li~~~ 414 (820)
-..+++...... .-.|.. .++..+...|-..|++++|++++++.++. .|+ +..|..-...|
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Karil 238 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 666666554321 112444 34466678889999999999999999988 455 67888899999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--H----HH--HHHHHHHHh
Q 003433 415 AKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNL--L----TY--STLIDVYSK 486 (820)
Q Consensus 415 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~----~~--~~li~~~~~ 486 (820)
-+.|++++|.+.++.....+ ..|...-+-.+..+.++|++++|.+++......+..|-. . .| .....+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999877 567788888889999999999999999988766543322 1 22 455789999
Q ss_pred cCCHHHHHHHHHHHHH
Q 003433 487 GGLYKEAMQIFREFKQ 502 (820)
Q Consensus 487 ~g~~~~A~~~~~~m~~ 502 (820)
.|++..|++.|..+.+
T Consensus 318 ~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLK 333 (517)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 9999999988777654
No 78
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=7.3e-07 Score=93.36 Aligned_cols=455 Identities=12% Similarity=0.101 Sum_probs=246.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 003433 198 AMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGG 277 (820)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 277 (820)
+=++.+...|++++|.+...+++..+ +.+..++..=+-+..+.+++++|+.+.+.-... .-+.+-+--=.-+..+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 44677889999999999999999876 457778888888899999999999665543210 111111111123345777
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 003433 278 VDFKHVVEIFDDMLRNGVQP-DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQ-DIFTYNTLLDAICKGAQMDLAFE 355 (820)
Q Consensus 278 ~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~g~~~~A~~ 355 (820)
..++|+..++ |..+ |..+...-...+.+.|++++|..+|+.+.+.+.+. +...-..++.+-.. -.+ +
T Consensus 94 -k~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~-~ 162 (652)
T KOG2376|consen 94 -KLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV-Q 162 (652)
T ss_pred -cHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH-H
Confidence 8899999888 3333 33355555677899999999999999998875321 12222222222111 111 1
Q ss_pred HHHHchhCCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHCC-------CCCCH-------HHHHHHHHHHHHcC
Q 003433 356 IMAEMPAKNISPNVVTYSTM---IDGYAKAGRLDDALNMFSEMKFLG-------IGLDR-------VSYNTVLSIYAKLG 418 (820)
Q Consensus 356 ~~~~m~~~g~~p~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~-------~~~d~-------~~~~~li~~~~~~g 418 (820)
+.+..... | ..+|..+ ...+...|++.+|+++++.....+ -.-+. ..-.-|.-++-..|
T Consensus 163 ~~q~v~~v---~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 163 LLQSVPEV---P-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred HHHhccCC---C-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 23333322 2 2344433 445678999999999999883221 01111 11233445677889
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCHH-HHHHHHHHHHHCC-----------CCCCHHHHHHHHH
Q 003433 419 RFEEALLVCKEMESSGIRKDAVT----YNALLGGYGKQGKYD-EVRRMFEQMKADC-----------VSPNLLTYSTLID 482 (820)
Q Consensus 419 ~~~~A~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~-~A~~~~~~m~~~~-----------~~p~~~~~~~li~ 482 (820)
+.++|..++...++.. .+|... -|.|+.+-....-++ .++..++...... ..-....-+.++.
T Consensus 239 qt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred chHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888776 445422 233332211111111 1222222211110 0001111122233
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchh
Q 003433 483 VYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALC-KNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTE 561 (820)
Q Consensus 483 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 561 (820)
+|. +..+.+.++...+.. ..|....=+.+..++. +.....+|.+++...-+....-..++...++......|+++
T Consensus 318 l~t--nk~~q~r~~~a~lp~--~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 318 LFT--NKMDQVRELSASLPG--MSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHh--hhHHHHHHHHHhCCc--cCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 332 223333333332221 1222222222222222 22235666666666655321112334445555556666666
Q ss_pred hhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCC
Q 003433 562 CTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKI 641 (820)
Q Consensus 562 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~ 641 (820)
.|++++...+.. -.....+.+.
T Consensus 394 ~A~~il~~~~~~----------------------------------------------------------~~ss~~~~~~ 415 (652)
T KOG2376|consen 394 VALEILSLFLES----------------------------------------------------------WKSSILEAKH 415 (652)
T ss_pred HHHHHHHHHhhh----------------------------------------------------------hhhhhhhhcc
Confidence 665543221100 0013334445
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhc--CCchh-HHHHHH---Hhcc--ccchHHHHHHHHHHHhhcCCCcch
Q 003433 642 KPNVVTFSAILNACSRCNSFEDASMLLEELRLF--DNQVY-GVAHGL---LMGY--RDNIWVQALSLFDEVKLMDSSTAS 713 (820)
Q Consensus 642 ~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~--~~~~~-~~~~~~---~~~~--~~~~~~~A~~~~~~~~~~~~~~~~ 713 (820)
.|..| .++...|.+.++.+.|..+++++... +.... ..+..+ ...+ +.|+-++|...++++++.+|++ .
T Consensus 416 ~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d-~ 492 (652)
T KOG2376|consen 416 LPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPND-T 492 (652)
T ss_pred ChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCch-H
Confidence 56655 45667777877777788888776521 11110 111111 1122 5688999999999999999965 6
Q ss_pred hHHHHHHHHHhhcCchHHHHHHHH
Q 003433 714 AFYNALTDMLWHFGQKRGAQLVVL 737 (820)
Q Consensus 714 ~~~~~l~~~~~~~g~~~~A~~~~~ 737 (820)
.....++..|++. +.+.|+.+-+
T Consensus 493 ~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 493 DLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhh
Confidence 6688888888887 6677776643
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.18 E-value=1.6e-08 Score=108.56 Aligned_cols=132 Identities=20% Similarity=0.256 Sum_probs=72.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC---CCC
Q 003433 443 NALLGGYGKQGKYDEVRRMFEQMKAD---CVSPN----LLTYSTLIDVYSKGGLYKEAMQIFREFKQA----GL---KAD 508 (820)
Q Consensus 443 ~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~---~p~ 508 (820)
+.++..++..+++++|..+++...+. -..++ ..+++.|...|.+.|++++|.++|++.+.. +- .-.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 33444555555555555555543221 01111 235666666666666666666666665432 11 111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCC-CCCHH-HHHHHHHHHhhcCchhhhHHhHHHHhhhh
Q 003433 509 VVLYSALIDALCKNGLVESAVSLLDEMTK----EGI-RPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQ 574 (820)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~-~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~ 574 (820)
...++.|...|.+.+++++|.++|.+... .|. .|+.. +|..|...|.+.|+++.|+++.+.++...
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAR 480 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 33455666666666777766666666432 122 23433 67777777777777777777766666543
No 80
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=6.3e-08 Score=100.27 Aligned_cols=105 Identities=16% Similarity=0.134 Sum_probs=87.3
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCC-HHHHHHHHHHHHHcCC
Q 003433 306 LAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN-VVTYSTMIDGYAKAGR 384 (820)
Q Consensus 306 l~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 384 (820)
.++.+..|+++.|..+|-+.+... ++|.+.|..-..+|.+.|++++|++=-.+-++. .|+ ...|+-+..++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 356678899999999999999876 448889999999999999999999887777665 445 4578889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 385 LDDALNMFSEMKFLGIGLDRVSYNTVLSIY 414 (820)
Q Consensus 385 ~~~A~~~~~~m~~~~~~~d~~~~~~li~~~ 414 (820)
+++|+.-|.+-++.. +-+...++-|.+++
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 999999999988775 55677788888877
No 81
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.17 E-value=1.3e-06 Score=92.85 Aligned_cols=112 Identities=16% Similarity=0.229 Sum_probs=60.8
Q ss_pred ccchHHHHHHHHHHHhhcCCCcchhHHHHHH---H-HHhhcC-chHHHHHHHHHhhhhhhhhh---hhhccchhhhh-cc
Q 003433 690 RDNIWVQALSLFDEVKLMDSSTASAFYNALT---D-MLWHFG-QKRGAQLVVLEGKRRQVWEN---VWSESCLDLHL-MS 760 (820)
Q Consensus 690 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~---~-~~~~~g-~~~~A~~~~~~~~~~~~~~~---~~~~~~~d~~~-~~ 760 (820)
..|.+++|.+.|-++++++-- +.+.+.+.- + -..+.| +.++|.++|.. .+-|.. +--.||-|+.- --
T Consensus 1007 degk~edaskhyveaiklnty-nitwcqavpsrfd~e~ir~gnkpe~av~mfi~---dndwa~aervae~h~~~~l~dv~ 1082 (1636)
T KOG3616|consen 1007 DEGKFEDASKHYVEAIKLNTY-NITWCQAVPSRFDAEFIRAGNKPEEAVEMFIH---DNDWAAAERVAEAHCEDLLADVL 1082 (1636)
T ss_pred hccchhhhhHhhHHHhhcccc-cchhhhcccchhhHHHHHcCCChHHHHHHhhh---cccHHHHHHHHHhhChhhhHHHH
Confidence 478888998888888887652 222111110 1 134556 67788877642 334432 12235544321 12
Q ss_pred hhHHHHHHHHHHHHHHHH--hhcCCCCChhHHHHHHHhhhhhhHHHHHH
Q 003433 761 SGAARAMVHAWLLNIHSI--VFEGHELPKLLRYMIICLSVADECLLLLK 807 (820)
Q Consensus 761 ~g~~~~~~~~w~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (820)
+|.+..+++.= +..++ ...-...|.+.-......++|-+++-+.|
T Consensus 1083 tgqar~aiee~--d~~kae~fllrankp~i~l~yf~e~~lw~dalri~k 1129 (1636)
T KOG3616|consen 1083 TGQARGAIEEG--DFLKAEGFLLRANKPDIALNYFIEAELWPDALRIAK 1129 (1636)
T ss_pred hhhhhcccccc--chhhhhhheeecCCCchHHHHHHHhccChHHHHHHH
Confidence 67777776421 11111 11113357777777888899888775544
No 82
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.5e-07 Score=97.57 Aligned_cols=416 Identities=15% Similarity=0.117 Sum_probs=254.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 241 (820)
-..+....|+++.|+.+|..++..+ |.+..+|+.-..+|.+.|++++|.+=-.+.++..+. =...|+-...++.-.
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~---p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLS---PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGL 83 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccC---CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhc
Confidence 4566778999999999999999885 446779999999999999999999888888776432 256899999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-----HHHhCCCHH
Q 003433 242 GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLA-----VCSRGGLWE 316 (820)
Q Consensus 242 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-----~~~~~g~~~ 316 (820)
|++++|+.-|.+-++.... |...++.+..++.. + ..+.+.| -+...|..+.. .+...-.+.
T Consensus 84 g~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~---~-~~~~~~~---------~~p~~~~~l~~~p~t~~~~~~~~~~ 149 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLE---D-YAADQLF---------TKPYFHEKLANLPLTNYSLSDPAYV 149 (539)
T ss_pred ccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhH---H-HHhhhhc---------cCcHHHHHhhcChhhhhhhccHHHH
Confidence 9999999999998875322 55566666666511 1 1111111 12233322221 111111111
Q ss_pred HHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHH-HHHH------------HHchhCCCCC-C----------H
Q 003433 317 AARNLFNEMVHRGIDQDIFT---YNTLLDAICKGAQMDLA-FEIM------------AEMPAKNISP-N----------V 369 (820)
Q Consensus 317 ~A~~~~~~~~~~g~~~~~~~---~~~ll~~~~~~g~~~~A-~~~~------------~~m~~~g~~p-~----------~ 369 (820)
.- ++.+ ..+ +.++.. .-.++.+.......+.- ...- ..+....... | .
T Consensus 150 ~~---l~~~-~~~-p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a 224 (539)
T KOG0548|consen 150 KI---LEII-QKN-PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKA 224 (539)
T ss_pred HH---HHHh-hcC-cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhh
Confidence 11 1111 111 000000 01111111111000000 0000 0000000000 1 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-----
Q 003433 370 VTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNA----- 444 (820)
Q Consensus 370 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----- 444 (820)
.-...+.++..+..+++.|++.+....+.. -+..-++....+|...|.+.+....-...++.| .-...-|+.
T Consensus 225 ~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g-re~rad~klIak~~ 301 (539)
T KOG0548|consen 225 HKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG-RELRADYKLIAKAL 301 (539)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh-HHHHHHHHHHHHHH
Confidence 224557777788889999999999888774 455556777789999999888888877776665 222233332
Q ss_pred --HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003433 445 --LLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKN 522 (820)
Q Consensus 445 --li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 522 (820)
+..+|.+.++++.|+..|.+.+.....||.. .+....+++.+..+...-.++.. ..--..-...+.+.
T Consensus 302 ~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 302 ARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKK 371 (539)
T ss_pred HHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhc
Confidence 3446777888999999999977654444332 23345566666655554443222 11122236678899
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHH
Q 003433 523 GLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQII 602 (820)
Q Consensus 523 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (820)
|++..|++.|.++++.. .-|...|....-+|.+.|.+..|+.-.+.+++.+|...
T Consensus 372 gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~------------------------ 426 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFI------------------------ 426 (539)
T ss_pred cCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHH------------------------
Confidence 99999999999999875 33666899999999999999999998888888866542
Q ss_pred HHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCCHHHH
Q 003433 603 KVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTF 648 (820)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~~~~ 648 (820)
.+|.+-+. ....++++++|++.|++.++ .+|+..-+
T Consensus 427 kgy~RKg~--------al~~mk~ydkAleay~eale--~dp~~~e~ 462 (539)
T KOG0548|consen 427 KAYLRKGA--------ALRAMKEYDKALEAYQEALE--LDPSNAEA 462 (539)
T ss_pred HHHHHHHH--------HHHHHHHHHHHHHHHHHHHh--cCchhHHH
Confidence 11111110 02233478889999998887 55665433
No 83
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=8.2e-07 Score=95.73 Aligned_cols=229 Identities=17% Similarity=0.158 Sum_probs=128.5
Q ss_pred HHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---------CCCCHHHHHHHHH
Q 003433 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEG---------YGNTVYAFSALIS 236 (820)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~~li~ 236 (820)
|...|+.+.|.+-.+.+... .+|..|.++|.+.+++|-|.-.+..|.... -.++ ..-.....
T Consensus 738 yvtiG~MD~AfksI~~IkS~--------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAv 808 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIKSD--------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAV 808 (1416)
T ss_pred EEEeccHHHHHHHHHHHhhh--------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHH
Confidence 45567777776655443322 266677777777777776666655553210 0111 11122233
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 003433 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (820)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 316 (820)
.....|.+++|..+|++.+. |..|=..|...| .+++|+++-+.--+. . =..||.....-+-..++.+
T Consensus 809 LAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g-~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKR---------YDLLNKLYQSQG-MWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcc-cHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHH
Confidence 34456777777777776664 223334445555 677776665543221 1 1234444445555556666
Q ss_pred HHHHHHHHHH----------HCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHH
Q 003433 317 AARNLFNEMV----------HRG---------IDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMID 377 (820)
Q Consensus 317 ~A~~~~~~~~----------~~g---------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 377 (820)
.|++.|++.- ... -..|...|.-....+-..|++|.|+.+|....+ |-++++
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~Vr 946 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVR 946 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhhee
Confidence 6666655321 110 012344444455555567777777777776543 556667
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 378 GYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEME 431 (820)
Q Consensus 378 ~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~ 431 (820)
..|-.|+.++|-.+-++ .-|......|...|-..|++.+|...|.+..
T Consensus 947 I~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 77777777777766554 2355666667778888888888877776653
No 84
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.16 E-value=1e-06 Score=97.35 Aligned_cols=421 Identities=14% Similarity=0.034 Sum_probs=258.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003433 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMA 358 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 358 (820)
+...|+..|-+..+.... -...|..|...|+..-+...|.+.|++..+.+ ..|...+..+.+.|++..++++|..+.-
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 567888888877775322 34578889999988889999999999998864 3467788899999999999999999844
Q ss_pred HchhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003433 359 EMPAKNIS-PNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK 437 (820)
Q Consensus 359 ~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 437 (820)
..-+.... .-...|....-.|.+.++..+|+..|+...... +.|...|..++.+|.+.|++..|+++|.+..... +.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~ 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PL 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cH
Confidence 33332100 112234445556788899999999999988776 6678889999999999999999999998887643 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CC
Q 003433 438 DAVTYNALLGGYGKQGKYDEVRRMFEQMKADC------VSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ-------AG 504 (820)
Q Consensus 438 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~ 504 (820)
+...-.-..-..+..|.+.+|...+..++... ..--..++..+...+.-.|-..+|..+|+..++ ..
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 22332333445677899999999888775431 111223333343334444444444444444332 22
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhh
Q 003433 505 LKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMC 584 (820)
Q Consensus 505 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~ 584 (820)
..-+...|-.+.++ ..+|-... .. .|+......|..-+-..+....- +++.-+.+.+.....+
T Consensus 709 ~~~~~~~Wi~asda----------c~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~-d~l~Lg~~c~~~hlsl---- 771 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDA----------CYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKN-DLLFLGYECGIAHLSL---- 771 (1238)
T ss_pred hhhhHHHHHHHhHH----------HHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcch-hHHHHHHHHhhHHHHH----
Confidence 12233344333332 22333222 00 12222222222212222211000 0000000000000000
Q ss_pred ccCchhhhhhccch-HHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 003433 585 SQDDKDVQEAGRTD-NQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFED 663 (820)
Q Consensus 585 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~~~e 663 (820)
. .....| |-.++.|...-.. |.. ..+...|+..+.+.++..- -|..+|++|+-+ +.-|++.-
T Consensus 772 -----~--~~~~~WyNLGinylr~f~~l--~et------~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~ 834 (1238)
T KOG1127|consen 772 -----A--IHMYPWYNLGINYLRYFLLL--GET------MKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVAC 834 (1238)
T ss_pred -----h--hccchHHHHhHHHHHHHHHc--CCc------chhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhh
Confidence 0 001222 2223333322111 111 1134568889998877433 377888887766 77799999
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHH
Q 003433 664 ASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLE 738 (820)
Q Consensus 664 A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 738 (820)
|...|-+.+..+|...+++.++.+-+ ...+.+.|...|.++..++|.+ ...|--.+-+....|+.-++..+|..
T Consensus 835 aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~n-l~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 835 AQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLN-LVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchh-hHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99999999888998888887776544 6789999999999999999965 55577777788889999999888865
No 85
>PF13041 PPR_2: PPR repeat family
Probab=99.16 E-value=1.1e-10 Score=84.01 Aligned_cols=50 Identities=44% Similarity=0.796 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh
Q 003433 507 ADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR 556 (820)
Q Consensus 507 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 556 (820)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57777777777777777777777777777777777777777777777754
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=1.9e-07 Score=89.06 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhhhhhh
Q 003433 696 QALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVW 749 (820)
Q Consensus 696 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 749 (820)
+|.+-+++.+++- -.+..+.+|+||+..++..+++.|+...+-...+..|
T Consensus 401 ~ai~~Yd~~LE~Y----LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~W 450 (459)
T KOG4340|consen 401 KAVNEYDETLEKY----LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDVW 450 (459)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHhhccccccHHHHHHHHHHHhhhccccee
Confidence 3444455554432 2347889999999999999999998766544333344
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.15 E-value=3.1e-08 Score=102.19 Aligned_cols=224 Identities=16% Similarity=0.130 Sum_probs=143.4
Q ss_pred HHcCCCHHHHHHHHHHHHHcccccC-ChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 003433 166 LGNRGEWSKAIQCFAFAVKREERKN-DQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYC 244 (820)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 244 (820)
....++.+.++.-+.+++......+ .....+..++..|.+.|+.++|...|+++++..+ .+..+|+.+...|...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCH
Confidence 3344567778888877775432222 2245677788888888888888888888888754 3678888888888888888
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 003433 245 QEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNE 324 (820)
Q Consensus 245 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 324 (820)
++|++.|++..+.... +..+|..+..++...| ++++|++.|++..+.. |+..........+...++.++|...|.+
T Consensus 115 ~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g-~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 115 DAAYEAFDSVLELDPT-YNYAYLNRGIALYYGG-RYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 8888888888874432 4667777777788888 8888888888888753 3322222222234456778888888866
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchh---CCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 325 MVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPA---KNIS---PNVVTYSTMIDGYAKAGRLDDALNMFSEMKFL 398 (820)
Q Consensus 325 ~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 398 (820)
..... .++...+ .+. +...|+..++ +.++.+.+ ..+. ....+|..+...+.+.|++++|+..|++....
T Consensus 191 ~~~~~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 191 RYEKL-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHhhC-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 55432 2222221 222 2334444333 23333321 1110 12346777777777778888888887777766
Q ss_pred C
Q 003433 399 G 399 (820)
Q Consensus 399 ~ 399 (820)
.
T Consensus 266 ~ 266 (296)
T PRK11189 266 N 266 (296)
T ss_pred C
Confidence 4
No 88
>PF13041 PPR_2: PPR repeat family
Probab=99.12 E-value=1.8e-10 Score=82.86 Aligned_cols=49 Identities=47% Similarity=0.830 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003433 367 PNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYA 415 (820)
Q Consensus 367 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~ 415 (820)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.||++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
No 89
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.09 E-value=1.3e-07 Score=97.51 Aligned_cols=148 Identities=14% Similarity=0.029 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003433 279 DFKHVVEIFDDMLRNG-VQPD--RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFE 355 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~ 355 (820)
..+.++..+.+++... ..|+ ...|..+...+...|+.++|...|++.++.. +.+...|+.+...+...|++++|++
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3444555555555321 1111 2335555555556666666666666655543 2245555666666666666666666
Q ss_pred HHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003433 356 IMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEM 430 (820)
Q Consensus 356 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~ 430 (820)
.|++..+.... +..+|..+..++...|++++|++.|++..+. .|+..........+...++.++|+..|.+.
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 66665554322 3445555555555566666666666655554 222211111111223344555666555443
No 90
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=4.1e-05 Score=84.88 Aligned_cols=17 Identities=0% Similarity=-0.175 Sum_probs=10.9
Q ss_pred HHHHhhcCchHHHHHHH
Q 003433 720 TDMLWHFGQKRGAQLVV 736 (820)
Q Consensus 720 ~~~~~~~g~~~~A~~~~ 736 (820)
+.+|-+.++|....++-
T Consensus 1511 Aylyk~n~rW~qSiel~ 1527 (1666)
T KOG0985|consen 1511 AYLYKGNNRWKQSIELC 1527 (1666)
T ss_pred HHHHhccchHHHHHHHh
Confidence 34566677787776663
No 91
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.07 E-value=1.3e-07 Score=87.55 Aligned_cols=198 Identities=13% Similarity=0.048 Sum_probs=92.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003433 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 238 (820)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 238 (820)
...+.-+|.+.|++..|..-++++++.+ |.+..++..+...|-+.|+.+.|.+.|+++++..+. +-.+.|.....+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D---Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD---PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 3334445555555555555555555543 223334445555555555555555555555544322 344445555555
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 003433 239 GRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAA 318 (820)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 318 (820)
|..|++++|...|++......-+ --..+|..+.-+..+.|+.+.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~-----------------------------------~~s~t~eN~G~Cal~~gq~~~A 158 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYG-----------------------------------EPSDTLENLGLCALKAGQFDQA 158 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCC-----------------------------------CcchhhhhhHHHHhhcCCchhH
Confidence 55555555555555544321111 1123444444444455555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 319 RNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKF 397 (820)
Q Consensus 319 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 397 (820)
...|++.++.. +....+.-.+.....+.|++-.|...++.....+. ++..+....|..-...|+-+.+.++=.++..
T Consensus 159 ~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 159 EEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55555554442 11233344445555555555555555555544433 3444444455555555555555444444433
No 92
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.06 E-value=1.1e-07 Score=88.07 Aligned_cols=198 Identities=16% Similarity=0.030 Sum_probs=98.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003433 374 TMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQG 453 (820)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 453 (820)
.|.-+|...|+...|.+-+++.++.+ +-+..++..+...|.+.|+.+.|.+.|++.++.. +.+..+.|.....+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 34445555555555555555555543 3334455555555555555555555555555443 334445555555555555
Q ss_pred CHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003433 454 KYDEVRRMFEQMKADCV-SPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLL 532 (820)
Q Consensus 454 ~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 532 (820)
++++|...|++....-. .--..+|..+..+..+.|+.+.|...|++.++.... ...+.-.+.....+.|++..|...+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHH
Confidence 55555555555544311 111234555555555555555555555555554332 2334444555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhh
Q 003433 533 DEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQK 575 (820)
Q Consensus 533 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~ 575 (820)
++....+. ++....-..|..-...|+.+.+...-.+....+|
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 55554432 4555444444444555555554444333333333
No 93
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=4.8e-06 Score=91.97 Aligned_cols=205 Identities=14% Similarity=0.142 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 334 IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSI 413 (820)
Q Consensus 334 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~ 413 (820)
..+|..+..+-.+.|.+.+|++-|-+.. |...|..+++...+.|.+++-.+++...++..-.|... +.||-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 4566777777777777777776665432 55667777777777777777777666655554334332 456666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003433 414 YAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEA 493 (820)
Q Consensus 414 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 493 (820)
|++.+++.+-.+++ .-||......+.+-|...|.++.|.-+|.. +..|..|...+...|.+..|
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHH
Confidence 77777665544332 136666666666667777777766666553 33456666666667777766
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhh
Q 003433 494 MQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGK 573 (820)
Q Consensus 494 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~ 573 (820)
...-++. .+..||..+..+|...+.+.-| +|-...+.-...-...|+.-|...|-+++-+.+++.+++.
T Consensus 1240 VD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1240 VDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL 1308 (1666)
T ss_pred HHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch
Confidence 6554443 3566777777777766655433 2333333344555667777777778888777777766654
No 94
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.06 E-value=2.3e-06 Score=91.06 Aligned_cols=192 Identities=18% Similarity=0.322 Sum_probs=134.3
Q ss_pred HHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 003433 341 LDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRF 420 (820)
Q Consensus 341 l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~ 420 (820)
+.+.....++.+|+.+++.+..... -..-|..+.+-|...|+++.|.++|.+.- .++--|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 4445566788888888888776532 23346777788888899999988886532 355677888999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003433 421 EEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREF 500 (820)
Q Consensus 421 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 500 (820)
+.|.++-.+.. |.......|.+-..-+-+.|++.+|.++|-.+- .|+. -|.+|-+.|..++.+++.++-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 98888776654 223345566666677778888888888876543 3443 467888888888888776653
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHh
Q 003433 501 KQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDD 566 (820)
Q Consensus 501 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 566 (820)
.- ..-..|...+..-|-..|++..|...|-+..+ |.+-+++|-..+.+++|.++
T Consensus 877 h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 877 HG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred Ch---hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHH
Confidence 21 11234566677788888999999888876653 55666777777777777654
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.05 E-value=9.7e-07 Score=94.73 Aligned_cols=88 Identities=10% Similarity=0.070 Sum_probs=39.1
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhc
Q 003433 271 DACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGI-DQDI--FTYNTLLDAICKG 347 (820)
Q Consensus 271 ~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~-~~~~--~~~~~ll~~~~~~ 347 (820)
..+...| ++++|...+++.++.... +...+..+..++...|++++|+..+++..+... .++. ..|..+...+...
T Consensus 122 ~~~~~~G-~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 122 FGLEEAG-QYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHcC-CHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 3444444 555555555555544222 233444444455555555555555554444311 0111 1233344444455
Q ss_pred CCHHHHHHHHHHc
Q 003433 348 AQMDLAFEIMAEM 360 (820)
Q Consensus 348 g~~~~A~~~~~~m 360 (820)
|++++|+.+|++.
T Consensus 200 G~~~~A~~~~~~~ 212 (355)
T cd05804 200 GDYEAALAIYDTH 212 (355)
T ss_pred CCHHHHHHHHHHH
Confidence 5555555555444
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=1e-05 Score=87.58 Aligned_cols=328 Identities=15% Similarity=0.213 Sum_probs=187.0
Q ss_pred chHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH--------cccccCChhHHHHHHHHHHHhcCChHH
Q 003433 140 VSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVK--------REERKNDQGKLASAMISILGRLGKVDL 211 (820)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~ 211 (820)
.+.+.+++++.. ..+...|..+.+.+.+.++++-|.-++..|.. +....++. .-..+...-...|.+++
T Consensus 742 G~MD~AfksI~~-IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e--~eakvAvLAieLgMlEe 818 (1416)
T KOG3617|consen 742 GSMDAAFKSIQF-IKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE--DEAKVAVLAIELGMLEE 818 (1416)
T ss_pred ccHHHHHHHHHH-HhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc--hhhHHHHHHHHHhhHHH
Confidence 344444544431 12344699999999999999988877765532 11111211 11233444567899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHH-
Q 003433 212 AKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDM- 290 (820)
Q Consensus 212 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m- 290 (820)
|..+|++..+ |..|=..|...|.+++|+++-+.=-...+ -.||.....-+-..+ +.+.|++.|++.
T Consensus 819 A~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~-Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 819 ALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARR-DIEAALEYYEKAG 885 (1416)
T ss_pred HHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhc-cHHHHHHHHHhcC
Confidence 9999998865 33455567788999999988775433222 234444444444455 677777776643
Q ss_pred ---------HHCCC---------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003433 291 ---------LRNGV---------QPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDL 352 (820)
Q Consensus 291 ---------~~~g~---------~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 352 (820)
+...+ ..|...|.-....+-..|+.|.|+.+|....+ |..+++..|-.|+.++
T Consensus 886 ~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~k 956 (1416)
T KOG3617|consen 886 VHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDK 956 (1416)
T ss_pred ChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchH
Confidence 11110 12444455555556678888888888877654 4455566666666666
Q ss_pred HHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------CCCCCCHHHH---------------
Q 003433 353 AFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKF----------LGIGLDRVSY--------------- 407 (820)
Q Consensus 353 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~~~~~d~~~~--------------- 407 (820)
|-++-++-. |....-.|.+.|-..|++.+|+..|.+... +++ +...+
T Consensus 957 Aa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~--~d~L~nlal~s~~~d~v~aA 1028 (1416)
T KOG3617|consen 957 AARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM--KDRLANLALMSGGSDLVSAA 1028 (1416)
T ss_pred HHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHhhcCchhHHHHH
Confidence 666655432 445555566666666666666666654421 111 11111
Q ss_pred ----------HHHHHHHHHcCCHHHHHHHHH--------HHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003433 408 ----------NTVLSIYAKLGRFEEALLVCK--------EMESS--GIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKA 467 (820)
Q Consensus 408 ----------~~li~~~~~~g~~~~A~~~~~--------~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 467 (820)
..-+..|-+.|.+.+|+++-= +++.. .-..|+...+--.+.++...++++|..++-...+
T Consensus 1029 rYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1029 RYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred HHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 112234555566665554421 11112 2234666677677777777777777766654332
Q ss_pred ----------CC----------------CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003433 468 ----------DC----------------VSPNL----LTYSTLIDVYSKGGLYKEAMQIFREF 500 (820)
Q Consensus 468 ----------~~----------------~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 500 (820)
++ -.|+. .....+...|.++|.+..|-+-|.+.
T Consensus 1109 ~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1109 FSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 11 12222 23445667778888888877766554
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.04 E-value=4.6e-06 Score=81.47 Aligned_cols=203 Identities=13% Similarity=0.145 Sum_probs=93.6
Q ss_pred hcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003433 346 KGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALL 425 (820)
Q Consensus 346 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~ 425 (820)
-.|+...|++....+++..+- |...|..-..+|...|++..|+.=++...+.. .-+..++--+-..+...|+.+.++.
T Consensus 167 ~~GD~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~ 244 (504)
T KOG0624|consen 167 GSGDCQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLK 244 (504)
T ss_pred cCCchhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHH
Confidence 344444444444444443222 44444444455555555555555444444332 2233344444444555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003433 426 VCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL 505 (820)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 505 (820)
..++.++.+ ||....... | ..+.+..+.++.|.+ ....+++.++++..+...+..+
T Consensus 245 ~iRECLKld--pdHK~Cf~~---Y---KklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep 300 (504)
T KOG0624|consen 245 EIRECLKLD--PDHKLCFPF---Y---KKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEP 300 (504)
T ss_pred HHHHHHccC--cchhhHHHH---H---HHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCC
Confidence 555554432 333222111 1 111122222222221 1223445555555555554432
Q ss_pred CCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhh
Q 003433 506 KADVV---LYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYNSIIDAFGRSATTECTVDDVERDLGKQKE 576 (820)
Q Consensus 506 ~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~ 576 (820)
.-..+ .+..+-.++...|++.+|++...+.++ +.|| ..++.--..+|.-..+++.|++-|+++.+.++.
T Consensus 301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred cccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 21122 223334445556666666666666665 3444 446666666666666666666666666655443
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.04 E-value=1.1e-06 Score=94.38 Aligned_cols=202 Identities=12% Similarity=0.039 Sum_probs=123.9
Q ss_pred ChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 003433 191 DQGKLASAMISILGRLGKVDLAKNIFETALNEGYG-NT-VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNA 268 (820)
Q Consensus 191 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 268 (820)
+....+..+...+...|+.+.+.+.+......... .+ ..........+...|++++|.+++++..+.... +...+..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~ 82 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL 82 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH
Confidence 34455666666666677777766666665543221 12 222333344566778888888888887764322 3333332
Q ss_pred HHHHHH----cCCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 269 VIDACG----KGGVDFKHVVEIFDDMLRNGVQPD-RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDA 343 (820)
Q Consensus 269 ll~~~~----~~g~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 343 (820)
...+. ..+ ....+.+.+.. .....|+ ......+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 83 -~~~~~~~~~~~~-~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i 157 (355)
T cd05804 83 -HLGAFGLGDFSG-MRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHV 157 (355)
T ss_pred -hHHHHHhccccc-CchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 11221 223 34444444443 1112233 3344456667788888999999998888864 3456677888888
Q ss_pred HHhcCCHHHHHHHHHHchhCCCC-CCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 344 ICKGAQMDLAFEIMAEMPAKNIS-PNV--VTYSTMIDGYAKAGRLDDALNMFSEMKFL 398 (820)
Q Consensus 344 ~~~~g~~~~A~~~~~~m~~~g~~-p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 398 (820)
|...|++++|+..+++....... ++. ..|..+...+...|++++|+.++++....
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 88888888888888887764321 222 34556777888888888888888887543
No 99
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.00 E-value=1.9e-05 Score=82.07 Aligned_cols=421 Identities=11% Similarity=0.118 Sum_probs=265.9
Q ss_pred HHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003433 146 LKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG 225 (820)
Q Consensus 146 l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 225 (820)
-+.++.++.+.++|..||+.+..+ ..+++++.++++... .|....+|..-+....+.++++..+++|.+.+.. .
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~---FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--v 83 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV---FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--V 83 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc---CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--H
Confidence 345666778889999999988777 999999999999987 3555678999999999999999999999999775 3
Q ss_pred CCHHHHHHHHHHHHh-cCChhHH----HHHHHHH-HhCCCCC-CHHHHHHHHHHH---------HcCCCCHHHHHHHHHH
Q 003433 226 NTVYAFSALISAYGR-SGYCQEA----ISVFNSM-KRYNLKP-NLVTYNAVIDAC---------GKGGVDFKHVVEIFDD 289 (820)
Q Consensus 226 ~~~~~~~~li~~~~~-~g~~~~A----~~~~~~m-~~~~~~p-~~~~~~~ll~~~---------~~~g~~~~~A~~~~~~ 289 (820)
.+...|...+..-.+ .|+...+ .+.|+-. .+.|+.+ +-..|+..+.-+ ..+. +.+...++|++
T Consensus 84 LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~Q-RI~~vRriYqr 162 (656)
T KOG1914|consen 84 LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQ-RITAVRRIYQR 162 (656)
T ss_pred hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHH-HHHHHHHHHHH
Confidence 468888887775443 3333332 2333333 2445443 333455555443 3334 56778888888
Q ss_pred HHHCCCCC------CHHHHHHHHHHH-------HhCCCHHHHHHHHHHHHH--CCCCCCHH---------------HHHH
Q 003433 290 MLRNGVQP------DRITFNSLLAVC-------SRGGLWEAARNLFNEMVH--RGIDQDIF---------------TYNT 339 (820)
Q Consensus 290 m~~~g~~p------~~~~~~~ll~~~-------~~~g~~~~A~~~~~~~~~--~g~~~~~~---------------~~~~ 339 (820)
++..-+.- |-..|..=|+.. -+...+-.|.++++++.. .|+..+.. .|-.
T Consensus 163 al~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n 242 (656)
T KOG1914|consen 163 ALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKN 242 (656)
T ss_pred HhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHH
Confidence 87642210 112222222211 123456677777777753 24322222 2434
Q ss_pred HHHHHHhcCC------HH--HHHHHHHH-chhCCCCCCHHHHH-----HHHHHHHHcCC-------HHHHHHHHHHHHHC
Q 003433 340 LLDAICKGAQ------MD--LAFEIMAE-MPAKNISPNVVTYS-----TMIDGYAKAGR-------LDDALNMFSEMKFL 398 (820)
Q Consensus 340 ll~~~~~~g~------~~--~A~~~~~~-m~~~g~~p~~~~~~-----~li~~~~~~g~-------~~~A~~~~~~m~~~ 398 (820)
+|..=-.++- .- ...-++++ |.-.+..|++.-.- ..-+.+...|+ -+++..+++.....
T Consensus 243 ~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~ 322 (656)
T KOG1914|consen 243 WIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEG 322 (656)
T ss_pred HHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 4433222111 00 11111222 11223333332111 11123334444 45566666665543
Q ss_pred CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CH
Q 003433 399 GIGLDRVSYNTVLSIYAKLG---RFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP-NL 474 (820)
Q Consensus 399 ~~~~d~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~ 474 (820)
-..-+..+|..+.+.--..- ..+....+++++...-...-..+|..+++...+..-+..|+.+|.+..+.+..+ ++
T Consensus 323 l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhV 402 (656)
T KOG1914|consen 323 LLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHV 402 (656)
T ss_pred HHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchh
Confidence 22334444544443221111 255566667666543323334678888888889999999999999999988666 88
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 003433 475 LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNV--VTYNSIID 552 (820)
Q Consensus 475 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~ 552 (820)
..+++++.-|| .++.+-|.++|+--++.- .-+..--...++.+...|+-..|..+|++.+..++.||. .+|..+|+
T Consensus 403 fVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 403 FVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred hHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 89999999888 578899999999866542 224455567788899999999999999999988777765 49999999
Q ss_pred HHhhcCchhhhHHhHHHHhhhhh
Q 003433 553 AFGRSATTECTVDDVERDLGKQK 575 (820)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~l~~~~ 575 (820)
-=..-|++...+++.++....++
T Consensus 481 yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 481 YESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHhcccHHHHHHHHHHHHHhcc
Confidence 88999999999888777666555
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.99 E-value=1.2e-06 Score=85.40 Aligned_cols=325 Identities=15% Similarity=0.123 Sum_probs=184.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 003433 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTM---IDGYAKAGRLDDALNMFSEMKFLGIGLDRVSY-NTVL 411 (820)
Q Consensus 336 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~-~~li 411 (820)
-..-|...+...|++.+|+.-|...++. |...|.++ ...|...|+-..|+.=|.+.++. +||-..- ..-.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 3344455555555555555555555543 22223222 33455555555555555555544 4443221 1122
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003433 412 SIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYK 491 (820)
Q Consensus 412 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 491 (820)
..+.+.|.+++|..=|+.+++.. |+..+ ...++.+.-..++-.. ....+..+.-.|+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQ 172 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchh
Confidence 34445555555555555555432 11100 1111111111111111 112233445578888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHh
Q 003433 492 EAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDL 571 (820)
Q Consensus 492 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l 571 (820)
.|+.....+++..+ .|...|..-..+|...|++..|+.-++..-+.. ..+..++..+-..+...|+.+.++..+.+.+
T Consensus 173 ~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 173 NAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 88888888888653 478888888888888998888888777776542 2244466666777788888888888888888
Q ss_pred hhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCC--HHH--
Q 003433 572 GKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPN--VVT-- 647 (820)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd--~~~-- 647 (820)
+.+|+... |.- .|..+-+.-..+...+ .....+++.++++..+..++ ..|. .+.
T Consensus 251 KldpdHK~----Cf~----------~YKklkKv~K~les~e------~~ie~~~~t~cle~ge~vlk--~ep~~~~ir~~ 308 (504)
T KOG0624|consen 251 KLDPDHKL----CFP----------FYKKLKKVVKSLESAE------QAIEEKHWTECLEAGEKVLK--NEPEETMIRYN 308 (504)
T ss_pred ccCcchhh----HHH----------HHHHHHHHHHHHHHHH------HHHhhhhHHHHHHHHHHHHh--cCCcccceeee
Confidence 88876531 110 1111111111110000 01223466677777777766 3343 222
Q ss_pred -HHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCc
Q 003433 648 -FSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSST 711 (820)
Q Consensus 648 -~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~ 711 (820)
+..+-..|...|++-||++...+++..+|++..++..-.-++ ....+++|+.-|+++.+.++++
T Consensus 309 ~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 309 GFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred eeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 334445556778999999999999999998877665443344 3567899999999999988865
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.98 E-value=2.2e-06 Score=104.29 Aligned_cols=379 Identities=11% Similarity=-0.026 Sum_probs=235.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003433 195 LASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG 274 (820)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 274 (820)
++......+...|++.+|...+..+... ..-..............|+++.+..+++.+.......+..........+.
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 4445556666677777666544433111 00011122233445567888888888776632111112222233344445
Q ss_pred cCCCCHHHHHHHHHHHHHCCC------CCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHH
Q 003433 275 KGGVDFKHVVEIFDDMLRNGV------QPD--RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQD----IFTYNTLLD 342 (820)
Q Consensus 275 ~~g~~~~~A~~~~~~m~~~g~------~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~ll~ 342 (820)
..| +++++..++......-- .+. ......+...+...|++++|...+++..+.-...+ ....+.+..
T Consensus 421 ~~g-~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 421 SQH-RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HCC-CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 667 89999999988764311 111 11222334456789999999999999876421122 234566777
Q ss_pred HHHhcCCHHHHHHHHHHchhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHH
Q 003433 343 AICKGAQMDLAFEIMAEMPAK----NI-SPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFL----GIG--L-DRVSYNTV 410 (820)
Q Consensus 343 ~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~--~-d~~~~~~l 410 (820)
.+...|++++|...+++.... |. .....++..+...+...|++++|...+++.... +.. + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 788899999999999887642 11 111234566677889999999999999886542 211 1 22345566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHH-----HHH
Q 003433 411 LSIYAKLGRFEEALLVCKEMESSG--IRK--DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVS-PNLLTY-----STL 480 (820)
Q Consensus 411 i~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~-----~~l 480 (820)
...+...|++++|...+++..... ..+ ....+..+...+...|+.++|.+.+.+....... .....+ ...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 677788899999999998875421 112 2344555677888999999999999887542101 111111 112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHH
Q 003433 481 IDVYSKGGLYKEAMQIFREFKQAGLKAD---VVLYSALIDALCKNGLVESAVSLLDEMTKE----GIRPNV-VTYNSIID 552 (820)
Q Consensus 481 i~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~ll~ 552 (820)
+..+...|+.+.|.+.+........... ...+..+..++...|+.++|...+++.... |...+. .++..+..
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 2445568999999998877654221111 112456777889999999999999998753 333332 35666777
Q ss_pred HHhhcCchhhhHHhHHHHhhhhhh
Q 003433 553 AFGRSATTECTVDDVERDLGKQKE 576 (820)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~l~~~~~ 576 (820)
++.+.|+.++|...+.++++....
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCc
Confidence 889999999999999999987643
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.94 E-value=3.7e-06 Score=102.36 Aligned_cols=339 Identities=12% Similarity=-0.006 Sum_probs=219.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC------CCCHH--HHHHHH
Q 003433 199 MISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNL------KPNLV--TYNAVI 270 (820)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------~p~~~--~~~~ll 270 (820)
....+...|+++.+..+++.+.......+..........+...|++++|..+++.....-- .+... ....+.
T Consensus 380 ~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a 459 (903)
T PRK04841 380 HGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRA 459 (903)
T ss_pred hHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHH
Confidence 3445566788888777776652211111222334555666788999999999988754210 11111 112223
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHH
Q 003433 271 DACGKGGVDFKHVVEIFDDMLRNGVQPDR----ITFNSLLAVCSRGGLWEAARNLFNEMVHR----GI-DQDIFTYNTLL 341 (820)
Q Consensus 271 ~~~~~~g~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----g~-~~~~~~~~~ll 341 (820)
..+...| ++++|...+++....-...+. ...+.+...+...|++++|...+++.... |. .....++..+.
T Consensus 460 ~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 460 QVAINDG-DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHhCC-CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 3455778 999999999998764222222 23455666778899999999999988753 11 11134556677
Q ss_pred HHHHhcCCHHHHHHHHHHchhC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCC--CHHHHHHH
Q 003433 342 DAICKGAQMDLAFEIMAEMPAK----NIS--P-NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLG--IGL--DRVSYNTV 410 (820)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~--d~~~~~~l 410 (820)
..+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 7889999999999998876542 211 1 22345566677888899999999998876531 112 23345556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHH
Q 003433 411 LSIYAKLGRFEEALLVCKEMESSGIRK-DAVTY-----NALLGGYGKQGKYDEVRRMFEQMKADCVSPNL---LTYSTLI 481 (820)
Q Consensus 411 i~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li 481 (820)
...+...|+.++|...+++.....-.. ....+ ...+..+...|+.+.|...+............ ..+..+.
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 678889999999999998875421011 11111 11234456689999999998775542211111 1234667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 482 DVYSKGGLYKEAMQIFREFKQA----GLKA-DVVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (820)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (820)
.++...|+.++|...+++.... |... ...++..+..++.+.|+.++|...+.++++.
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888999999999999988653 3222 2346677788899999999999999999875
No 103
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.93 E-value=0.00023 Score=78.83 Aligned_cols=224 Identities=17% Similarity=0.161 Sum_probs=153.8
Q ss_pred HHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHH--HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003433 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMI--SILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGY 243 (820)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 243 (820)
....+++.+|++.....++.. |.. .+..++ -.+.+.|+.++|..+++.....+.. |..+...+-..|...|+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~---Pn~--~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH---PNA--LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGK 92 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC---CCc--HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhh
Confidence 345678999999999998874 332 222333 3356889999999888887666544 88899999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC----------
Q 003433 244 CQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGG---------- 313 (820)
Q Consensus 244 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---------- 313 (820)
.++|..+|++... ..|+......+..+|.+.+ ++.+-.+.--+|-+. ++-+.+.|=+++..+...-
T Consensus 93 ~d~~~~~Ye~~~~--~~P~eell~~lFmayvR~~-~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 93 LDEAVHLYERANQ--KYPSEELLYHLFMAYVREK-SYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred hhHHHHHHHHHHh--hCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccch
Confidence 9999999999986 3577777778888888888 776655555555543 2324555555555543321
Q ss_pred CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003433 314 LWEAARNLFNEMVHRG-IDQDIFTYNTLLDAICKGAQMDLAFEIMA-EMPAKNISPNVVTYSTMIDGYAKAGRLDDALNM 391 (820)
Q Consensus 314 ~~~~A~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 391 (820)
-..-|.+.++.+++.+ ...+..-.......+...|++++|.+++. ...+.-..-+...-+--++.+...+++.+..++
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence 1345777777777664 22222222233445566788999999984 333332333455556678888899999999999
Q ss_pred HHHHHHCC
Q 003433 392 FSEMKFLG 399 (820)
Q Consensus 392 ~~~m~~~~ 399 (820)
-.++...|
T Consensus 249 ~~~Ll~k~ 256 (932)
T KOG2053|consen 249 SSRLLEKG 256 (932)
T ss_pred HHHHHHhC
Confidence 99998885
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=2.3e-07 Score=97.11 Aligned_cols=235 Identities=16% Similarity=0.117 Sum_probs=160.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003433 447 GGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVE 526 (820)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 526 (820)
.-+.+.|++.+|.-.|+..+... +-+...|.-|.......++-..|+..+++.++..+. |......|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence 34567777888887887777663 445667777777777777777777777777776543 6677777777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHH
Q 003433 527 SAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFG 606 (820)
Q Consensus 527 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (820)
+|++.+++-+.... .. ..+..+ ...++.+.. + .+
T Consensus 371 ~Al~~L~~Wi~~~p--~y---~~l~~a-~~~~~~~~~----------------------~-s~----------------- 404 (579)
T KOG1125|consen 371 QALKMLDKWIRNKP--KY---VHLVSA-GENEDFENT----------------------K-SF----------------- 404 (579)
T ss_pred HHHHHHHHHHHhCc--cc---hhcccc-CccccccCC----------------------c-CC-----------------
Confidence 77777777765421 11 000000 000100000 0 00
Q ss_pred HHHHHHhcCCccchhhhhhHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHH
Q 003433 607 QLVAEKAGQGKKENRCRQEILCILGVFQKM-HKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGL 685 (820)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m-~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~ 685 (820)
....+.....++|-++ ...+.++|..+...|+-.|.-.|.+++|...|+.++..+|.++..++.+
T Consensus 405 --------------~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRL 470 (579)
T KOG1125|consen 405 --------------LDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRL 470 (579)
T ss_pred --------------CCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHh
Confidence 0000112233455444 3455445666667888889999999999999999999999999999998
Q ss_pred Hhcccc-chHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhh
Q 003433 686 LMGYRD-NIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQV 744 (820)
Q Consensus 686 ~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 744 (820)
...+.. ....+|+..|.+++++.|.-.. ....|+-.|...|-|.||.+++.+++....
T Consensus 471 GAtLAN~~~s~EAIsAY~rALqLqP~yVR-~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 471 GATLANGNRSEEAISAYNRALQLQPGYVR-VRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred hHHhcCCcccHHHHHHHHHHHhcCCCeee-eehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 877754 4678999999999999997644 466688899999999999999988765443
No 105
>PLN02789 farnesyltranstransferase
Probab=98.79 E-value=4.4e-06 Score=86.00 Aligned_cols=211 Identities=10% Similarity=0.068 Sum_probs=150.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLG-KVDLAKNIFETALNEGYGNTVYAFSALISAYGR 240 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 240 (820)
+-..+...++.++|+.+...++..+ |.+..+++....++.+.| ++++++..+++++..++. +..+|+....++.+
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~ln---P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~ 118 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLN---PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHH
Confidence 3444566778999999999999884 555567877777888888 679999999999887544 67788887777777
Q ss_pred cCCh--hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC---CC-
Q 003433 241 SGYC--QEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG---GL- 314 (820)
Q Consensus 241 ~g~~--~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~- 314 (820)
.|+. ++++.+++++.+...+ |..+|+...-++...| +++++++.++++++.++. |...|+....++.+. |.
T Consensus 119 l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~-~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLG-GWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 7763 6788888888876554 7888988888888888 899999999999987665 666676666555444 22
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHH
Q 003433 315 ---WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKG----AQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK 381 (820)
Q Consensus 315 ---~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 381 (820)
.++......+++... +.|...|+.+...+... ++..+|.+.+.+....++. +......|++.|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 245666665666653 34566777777777662 3345576776666554332 55566666666664
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=7.4e-07 Score=93.34 Aligned_cols=256 Identities=15% Similarity=0.086 Sum_probs=162.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 003433 199 MISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGV 278 (820)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 278 (820)
.+..+.+.|++.+|.-.|+.+++.++. ++.+|..|......+++-..|+..++++.+.... |....-.|.-.|...|
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg- 367 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEG- 367 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhh-
Confidence 344566777788888888877776544 6778888888888888777888888887774432 5566666667777777
Q ss_pred CHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCC
Q 003433 279 DFKHVVEIFDDMLRNGVQ--------PDRITFNSLLAVCSRGGLWEAARNLFNEMV-HRGIDQDIFTYNTLLDAICKGAQ 349 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~g~~~~~~~~~~ll~~~~~~g~ 349 (820)
.-..|+.+++..+...++ .+..+-.. ..+.....+....++|-++. ..+...|..++..|.-.|.-.|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 566777777777654211 00000000 12222333444455554443 34444677777778778888888
Q ss_pred HHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 003433 350 MDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDR-VSYNTVLSIYAKLGRFEEALLVCK 428 (820)
Q Consensus 350 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~-~~~~~li~~~~~~g~~~~A~~~~~ 428 (820)
++.|+..|+..+...+. |...||-|...++...+.++|+..|.+.++. .|.- .+...|.-.|...|.+++|.+.|-
T Consensus 446 fdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 88888888887776433 6677888888888888888888888888776 4442 333445556777888888877776
Q ss_pred HHHH---C------CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003433 429 EMES---S------GIRKDAVTYNALLGGYGKQGKYDEVRRMF 462 (820)
Q Consensus 429 ~~~~---~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 462 (820)
..+. . ...++...|.+|=.++.-.++.|.+.+..
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 5432 1 11123467777766666666666544443
No 107
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=3e-05 Score=74.48 Aligned_cols=261 Identities=15% Similarity=0.101 Sum_probs=128.4
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH-
Q 003433 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSA- 233 (820)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~- 233 (820)
+.-....+...|.+..++..|..+|++.-... |.....-.--...+.+.+.+.+|+++...|... ++...-..
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~---P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lq 116 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH---PELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQ 116 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---hHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHH
Confidence 33345556666666667777777776665542 222222222345556666777777766666432 11111111
Q ss_pred -HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 003433 234 -LISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG 312 (820)
Q Consensus 234 -li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 312 (820)
-....-..+++-.+..+.+.....| +..+.+...-...+.| +++.|.+-|+...+-+---....|+..+. ..+.
T Consensus 117 LqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykeg-qyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~ 191 (459)
T KOG4340|consen 117 LQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEG-QYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSS 191 (459)
T ss_pred HHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccc-cHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhh
Confidence 1112223456666666666655321 3333333334445666 67777777776665432223445554333 3455
Q ss_pred CCHHHHHHHHHHHHHCCCCC-------------CHH---------------HHHHHHHHHHhcCCHHHHHHHHHHchhC-
Q 003433 313 GLWEAARNLFNEMVHRGIDQ-------------DIF---------------TYNTLLDAICKGAQMDLAFEIMAEMPAK- 363 (820)
Q Consensus 313 g~~~~A~~~~~~~~~~g~~~-------------~~~---------------~~~~ll~~~~~~g~~~~A~~~~~~m~~~- 363 (820)
|+++.|++...+++++|+.. |+. .+|.-...+.+.|+++.|.+.+-.|.-+
T Consensus 192 ~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRa 271 (459)
T KOG4340|consen 192 RQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRA 271 (459)
T ss_pred hhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcc
Confidence 66777777777776665321 110 1122222344556666666666666432
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003433 364 NISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCK 428 (820)
Q Consensus 364 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~ 428 (820)
....|.+|...+.-. --.+++.+..+-+.-+.+.. +-...||..++-.||++.-++-|-.++-
T Consensus 272 E~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 272 EEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred cccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 122344554443211 11233444444444444432 2334566666666666666666655553
No 108
>PLN02789 farnesyltranstransferase
Probab=98.73 E-value=1.3e-05 Score=82.68 Aligned_cols=206 Identities=10% Similarity=0.068 Sum_probs=148.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCC--H
Q 003433 204 GRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSG-YCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVD--F 280 (820)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--~ 280 (820)
...++.++|+.+.++++...+. +..+|+....++.+.| +++++++.++++.+...+ +..+|+.....+.+.+ . .
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~-~~~~ 124 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLG-PDAA 124 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcC-chhh
Confidence 3456778899999999887543 6678888888888888 679999999999986554 5667776655555666 4 3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCH----HHH
Q 003433 281 KHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKG---AQM----DLA 353 (820)
Q Consensus 281 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~---g~~----~~A 353 (820)
++++.+++++++...+ |..+|+....++...|+++++++.++++++.+. .|...|+.....+.+. |.. +++
T Consensus 125 ~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHH
Confidence 6788899899887655 778888888888889999999999999998763 4667777776666554 222 456
Q ss_pred HHHHHHchhCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003433 354 FEIMAEMPAKNISPNVVTYSTMIDGYAKA----GRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAK 416 (820)
Q Consensus 354 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~ 416 (820)
++...+++...+. |...|+.+...+... ++..+|.+.+.+....+ ..+......|++.|+.
T Consensus 203 l~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 203 LKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 6666666665443 677788877777663 34456777777766543 4456667777777764
No 109
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.72 E-value=3.1e-07 Score=93.30 Aligned_cols=80 Identities=25% Similarity=0.268 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 003433 385 LDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKY-DEVRRMFE 463 (820)
Q Consensus 385 ~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~ 463 (820)
+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+ +.+..+...++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 44444444444332 13344444444444444444444444444443322 22333333344333333433 33334444
Q ss_pred HHH
Q 003433 464 QMK 466 (820)
Q Consensus 464 ~m~ 466 (820)
++.
T Consensus 261 qL~ 263 (290)
T PF04733_consen 261 QLK 263 (290)
T ss_dssp HCH
T ss_pred HHH
Confidence 433
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.70 E-value=7.7e-06 Score=93.71 Aligned_cols=245 Identities=12% Similarity=0.079 Sum_probs=188.9
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 322 FNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK-NIS---PNVVTYSTMIDGYAKAGRLDDALNMFSEMKF 397 (820)
Q Consensus 322 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 397 (820)
|++.+... +.....|-..|....+.++.++|++++++.+.. ++. --.-.|.++++.-..-|.-+...++|+++.+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 44444432 345678888999999999999999999988753 111 0134688888888888888899999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHH
Q 003433 398 LGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP--NLL 475 (820)
Q Consensus 398 ~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~ 475 (820)
. .---..|..|...|.+.+.+++|.++|+.|.+.- .....+|...+..+.+.++-+.|..++.+.++.- +- ...
T Consensus 1526 y--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~ 1601 (1710)
T KOG1070|consen 1526 Y--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVE 1601 (1710)
T ss_pred h--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHH
Confidence 6 2234678899999999999999999999998753 4678899999999999999999999999987751 22 344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHH
Q 003433 476 TYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV--TYNSIIDA 553 (820)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~ 553 (820)
...-.++.-.+.|+.+.+..+|+.++...++ -...|+.+|++-.+.|+.+.+..+|++.+..++.|-.. .|...+..
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 4555666777899999999999999987655 67899999999999999999999999999988877654 56666665
Q ss_pred HhhcCchhhhHHhHHHHhh
Q 003433 554 FGRSATTECTVDDVERDLG 572 (820)
Q Consensus 554 ~~~~g~~~~a~~~~~~~l~ 572 (820)
=-+.|+-+.+..+=.+|.+
T Consensus 1681 Ek~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1681 EKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred HHhcCchhhHHHHHHHHHH
Confidence 5566665444333334443
No 111
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.70 E-value=7.1e-07 Score=90.66 Aligned_cols=148 Identities=19% Similarity=0.208 Sum_probs=64.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCC
Q 003433 379 YAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGY----GKQGK 454 (820)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~ 454 (820)
+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .|... ..+..++ .....
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l-~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSIL-TQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHH-HHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHH-HHHHHHHHHHHhCchh
Confidence 34445555555554321 233444444555555555555555555554432 22211 1122211 11224
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHH
Q 003433 455 YDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLV-ESAVSLLD 533 (820)
Q Consensus 455 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~ 533 (820)
+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+.. +..+...+|.+....|+. +.+.+.+.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 55555555554433 2344555555555555555555555555555444322 444444445444555544 33444444
Q ss_pred HHHH
Q 003433 534 EMTK 537 (820)
Q Consensus 534 ~m~~ 537 (820)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 4443
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.66 E-value=1.4e-05 Score=91.65 Aligned_cols=222 Identities=14% Similarity=0.086 Sum_probs=146.4
Q ss_pred hHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCC--hhHHHHHHHHHHHhcCChHHHHHHHHH
Q 003433 141 SLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKND--QGKLASAMISILGRLGKVDLAKNIFET 218 (820)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 218 (820)
.+++..+.+...+.+.-.|...+....+.++.++|++++++++..-..... -..+|.++++....-|.-+...++|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 344444445445555556777777777788888888888888764322111 223666777777777777777788888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCC-
Q 003433 219 ALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQP- 297 (820)
Q Consensus 219 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p- 297 (820)
+.+.. ..-.+|..|...|.+.+++++|.++|+.|.+. ..-....|...+..+.+.. +-+.|..++.++++.-.+-
T Consensus 1523 Acqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~n-e~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1523 ACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQN-EAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhccc-HHHHHHHHHHHHHhhcchhh
Confidence 87642 12446777888888888888888888888753 2246667777777777777 6777777877777642211
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCC
Q 003433 298 DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISP 367 (820)
Q Consensus 298 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p 367 (820)
........+..-.+.|+.+.++.+|+..+... +--...|+.++++-.+.|+.+.++.+|+++...++.+
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 22333444444566777777777777777652 3345677777777777777777777777777765543
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.64 E-value=3.9e-07 Score=82.60 Aligned_cols=111 Identities=11% Similarity=0.083 Sum_probs=95.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCC
Q 003433 631 GVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDS 709 (820)
Q Consensus 631 ~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~ 709 (820)
.+|++.++ ++|+. +..++.++...|++++|...|+.++..+|.+..+..++...+ ..|++++|+..|+++++++|
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 47777776 66775 456788999999999999999999999999988887776655 68999999999999999999
Q ss_pred CcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhhh
Q 003433 710 STASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWE 746 (820)
Q Consensus 710 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 746 (820)
.+ +..+..++.+|...|++++|+..+..+.+....+
T Consensus 90 ~~-~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 90 SH-PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred CC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 65 7779999999999999999999999998776543
No 114
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.56 E-value=1e-05 Score=81.01 Aligned_cols=102 Identities=15% Similarity=0.084 Sum_probs=63.9
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHH
Q 003433 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTV--YAFS 232 (820)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 232 (820)
.++.+..++..+.+.|++++|+..|+.++...+..+....++..++.++.+.|++++|...|+++++..+.... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 35556667777888888888888888887764332222345666777888888888888888888765432111 2444
Q ss_pred HHHHHHHhc--------CChhHHHHHHHHHHh
Q 003433 233 ALISAYGRS--------GYCQEAISVFNSMKR 256 (820)
Q Consensus 233 ~li~~~~~~--------g~~~~A~~~~~~m~~ 256 (820)
.+..++.+. |+.++|++.|+++.+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 143 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIR 143 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 555555443 445555555555544
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.56 E-value=3.9e-06 Score=90.34 Aligned_cols=218 Identities=13% Similarity=0.030 Sum_probs=171.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003433 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYA 415 (820)
Q Consensus 336 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~ 415 (820)
.-..+...+...|-...|+.+|++.. .|..+|.+|+..|+..+|..+..+..++ +||...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 34567788888999999999998765 4777889999999999999998888875 889999999998887
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003433 416 KLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQ 495 (820)
Q Consensus 416 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 495 (820)
..--+++|.++++..... .-..+.....+.++++++.+.|+.-.+.+ +-...+|-.+..+..+.++++.|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 777788888888765321 22223333445789999999998877653 4456788888888889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhh
Q 003433 496 IFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQ 574 (820)
Q Consensus 496 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~ 574 (820)
.|..-....+. +...||.+-.+|.+.|+-.+|...+++..+.+ .-+-..|...+-...+.|.+++|++.+.+.+...
T Consensus 541 aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 541 AFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 99988875433 57789999999999999999999999999876 3355567777777788899999988887766554
No 116
>PF12854 PPR_1: PPR repeat
Probab=98.54 E-value=1e-07 Score=61.33 Aligned_cols=34 Identities=21% Similarity=0.537 Sum_probs=32.0
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHh
Q 003433 639 LKIKPNVVTFSAILNACSRCNSFEDASMLLEELR 672 (820)
Q Consensus 639 ~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~ 672 (820)
.|+.||.+||++|+++|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3799999999999999999999999999999983
No 117
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.49 E-value=0.0045 Score=69.01 Aligned_cols=217 Identities=15% Similarity=0.149 Sum_probs=103.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 003433 240 RSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDAC--GKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEA 317 (820)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 317 (820)
..+++.+|+...+++.+.. ||.. |..++.++ .+.| ..++|..+++.....+.. |..|...+-.+|...++.++
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~g-k~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLG-KGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhc-CchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 4566666666666665432 3322 23333333 4555 566666666655544444 66666666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHchhCCCCCCHHHHHHHHHHHHHcCC---------
Q 003433 318 ARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDL----AFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR--------- 384 (820)
Q Consensus 318 A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--------- 384 (820)
|..+|++.... .|+......+..+|.+.+.+.+ |+++++...+ +...+.++++.+.+.-.
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-----~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-----RAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----ccchHHHHHHHHHHhccCCcccccch
Confidence 66666666654 2445555556666666555443 4444443322 44455555555444321
Q ss_pred -HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003433 385 -LDDALNMFSEMKFLGIGLD-RVSYNTVLSIYAKLGRFEEALLVCK-EMESSGIRKDAVTYNALLGGYGKQGKYDEVRRM 461 (820)
Q Consensus 385 -~~~A~~~~~~m~~~~~~~d-~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 461 (820)
..-|.+.++.+.+.+-+.. ..-...-...+...|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..++
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence 1223333344433320111 1111111122334455555555552 222222223333334444555555555555555
Q ss_pred HHHHHHC
Q 003433 462 FEQMKAD 468 (820)
Q Consensus 462 ~~~m~~~ 468 (820)
-.++...
T Consensus 249 ~~~Ll~k 255 (932)
T KOG2053|consen 249 SSRLLEK 255 (932)
T ss_pred HHHHHHh
Confidence 5555544
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.48 E-value=2.6e-05 Score=74.85 Aligned_cols=148 Identities=13% Similarity=0.115 Sum_probs=104.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003433 376 IDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKY 455 (820)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 455 (820)
+..|...|+++.+....+.+.. +. ..+...++.++++..++..++.. +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3457777777776544432211 10 01122566677777777776665 67788888888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003433 456 DEVRRMFEQMKADCVSPNLLTYSTLIDV-YSKGGL--YKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLL 532 (820)
Q Consensus 456 ~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 532 (820)
++|...|++..... +.+...+..+..+ |...|+ .++|.+++++..+.++. +...+..+...+.+.|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888887763 4466777777775 356666 48888888888887654 7778888888888888888888888
Q ss_pred HHHHHC
Q 003433 533 DEMTKE 538 (820)
Q Consensus 533 ~~m~~~ 538 (820)
+++++.
T Consensus 168 ~~aL~l 173 (198)
T PRK10370 168 QKVLDL 173 (198)
T ss_pred HHHHhh
Confidence 888875
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=5.6e-06 Score=89.12 Aligned_cols=215 Identities=13% Similarity=0.067 Sum_probs=176.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHc
Q 003433 303 NSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKA 382 (820)
Q Consensus 303 ~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 382 (820)
..+...+.+.|-...|..+|+++.. |--.+.+|+..|+.++|..+..+-.++ +||...|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 3456678889999999999987653 667899999999999999999888874 67899999999988888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003433 383 GRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMF 462 (820)
Q Consensus 383 g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 462 (820)
--+++|.++++..... .-..+.....+.++++++.+.|+.-.+.. +.-..+|..+..+..+.+++..|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 8899999998865432 11222222345789999999999877655 566789999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 463 EQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (820)
Q Consensus 463 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (820)
..-.... +-+...||.+-.+|.+.|+-.+|...+.+..+.+. -+...|...+....+.|.+++|++.+.++.+.
T Consensus 543 ~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 543 HRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 9988752 34567999999999999999999999999999873 46777888888889999999999999998753
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.47 E-value=1.6e-05 Score=79.52 Aligned_cols=186 Identities=13% Similarity=0.035 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHH
Q 003433 333 DIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNIS-PN-VVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDR--VSYN 408 (820)
Q Consensus 333 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~--~~~~ 408 (820)
....+..++..+.+.|++++|...|+++...... +. ..++..+..+|.+.|++++|+..++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4555566666666666666666666666554221 00 134555666666666666666666666654211011 1333
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003433 409 TVLSIYAKL--------GRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTL 480 (820)
Q Consensus 409 ~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 480 (820)
.+...+.+. |+.++|.+.|+.+.+.. +.+...+..+..... ... ... .....+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~------~~~--------~~~~~~ 172 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN------RLA--------GKELYV 172 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH------HHH--------HHHHHH
Confidence 344444433 44555555555554432 122222221111100 000 000 001134
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 481 IDVYSKGGLYKEAMQIFREFKQAGLK--ADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 481 i~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
...|.+.|++++|...++...+.... .....+..++.++.+.|++++|..+++.+..
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555666666666666666554211 1234555566666666666666666655544
No 121
>PF12854 PPR_1: PPR repeat
Probab=98.47 E-value=2.7e-07 Score=59.39 Aligned_cols=32 Identities=50% Similarity=0.932 Sum_probs=14.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q 003433 329 GIDQDIFTYNTLLDAICKGAQMDLAFEIMAEM 360 (820)
Q Consensus 329 g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m 360 (820)
|+.||..+||+||++||+.|++++|+++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.47 E-value=3e-05 Score=88.72 Aligned_cols=147 Identities=15% Similarity=0.177 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003433 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDR-VSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALL 446 (820)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 446 (820)
+...|..|+..|...+++++|.++.+...+. .|+. ..|-.+...+.+.++.+++..+ . ++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------LI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------hh
Confidence 3456777777777777777777777765554 3443 2333333355566665544443 2 22
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003433 447 GGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVE 526 (820)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 526 (820)
.......++.....+...|.+. .-+...+..|..+|-+.|+.++|..+|+++++.++. |+...|.+...|... +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHH
Confidence 2222233332222333333332 223345555666666666666666666666665533 566666666666666 666
Q ss_pred HHHHHHHHHHH
Q 003433 527 SAVSLLDEMTK 537 (820)
Q Consensus 527 ~A~~~~~~m~~ 537 (820)
+|++++.+++.
T Consensus 167 KA~~m~~KAV~ 177 (906)
T PRK14720 167 KAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.45 E-value=4e-05 Score=73.09 Aligned_cols=159 Identities=16% Similarity=0.113 Sum_probs=96.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003433 373 STMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQ 452 (820)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 452 (820)
..+-..+...|+-+....+........ +.|.......+....+.|++.+|...|++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 444455555666666655555543321 3444555556666666677777777666666544 56666677776677777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003433 453 GKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLL 532 (820)
Q Consensus 453 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 532 (820)
|++++|..-|.+..+.. .-+...+|.|...|.-.|+.+.|..++......+.. |...-..|.-.....|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 77777777666666542 334455666666666667777777766666654432 5555556666666677777766655
Q ss_pred HHH
Q 003433 533 DEM 535 (820)
Q Consensus 533 ~~m 535 (820)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 543
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.45 E-value=3.1e-05 Score=74.30 Aligned_cols=119 Identities=12% Similarity=0.148 Sum_probs=75.1
Q ss_pred cCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCC--HHHH
Q 003433 347 GAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSI-YAKLGR--FEEA 423 (820)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~-~~~~g~--~~~A 423 (820)
.++.++++..+++..+.+.. |...|..+...|...|++++|+..|++..+.. +-+...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45556666666665555433 56666667777777777777777777666654 3455556666654 345555 3677
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003433 424 LLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKAD 468 (820)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 468 (820)
.+++++..+.+ +.+..++..+...+.+.|++++|+..|+++++.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777766655 445666666666677777777777777776665
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=0.00022 Score=68.04 Aligned_cols=250 Identities=18% Similarity=0.131 Sum_probs=135.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCH
Q 003433 201 SILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDF 280 (820)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 280 (820)
+-+.-.|.+..++..-+...... .++..-.-+-++|...|++...+. +++.. -.|.......+......-+ +.
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~-~~~~lqAvr~~a~~~~~e~-~~ 88 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEG-KATPLQAVRLLAEYLELES-NK 88 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---ccccc-cCChHHHHHHHHHHhhCcc-hh
Confidence 33444555555555444443221 233333344455555555443322 22211 1233333333333232233 22
Q ss_pred H-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003433 281 K-HVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAE 359 (820)
Q Consensus 281 ~-~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 359 (820)
+ ..-++.+.+.......+......-...|+..|++++|++...... +......=+..+.+..+++.|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 333444445444334333344444456778888888887776621 233333345556677778888888888
Q ss_pred chhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003433 360 MPAKNISPNVVTYSTMIDGYAK----AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI 435 (820)
Q Consensus 360 m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 435 (820)
|.+.. +..|.+.|..++.+ .+.+.+|.-+|++|-++- .|+..+.+-...++...|++++|..+++..+.+.
T Consensus 163 mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd- 237 (299)
T KOG3081|consen 163 MQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD- 237 (299)
T ss_pred HHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 87752 56666666666654 346777888888877642 6777777777777777888888888888777665
Q ss_pred CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 003433 436 RKDAVTYNALLGGYGKQGKY-DEVRRMFEQMKAD 468 (820)
Q Consensus 436 ~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 468 (820)
..++.+...++-.-...|.. +-..+.+.++...
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 34555554444444444443 3334455555543
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.44 E-value=9.6e-05 Score=84.73 Aligned_cols=171 Identities=13% Similarity=0.114 Sum_probs=80.0
Q ss_pred CChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 003433 190 NDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAV 269 (820)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 269 (820)
+.+..++..|+..+...+++++|.++.+...+..+ .....|..++..+.+.++.+++..+ . +
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~ 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHK-KSISALYISGILSLSRRPLNDSNLL--N---------------L 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-cceehHHHHHHHHHhhcchhhhhhh--h---------------h
Confidence 34444555555555555555555555554444321 1233333333344444544433333 1 1
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003433 270 IDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQ 349 (820)
Q Consensus 270 l~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 349 (820)
+....... ++.-+..++..|... .-+...+..+..+|.+.|+.++|..+|+++++.. +.|+.+.|.+...|... +
T Consensus 90 l~~~~~~~-~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 90 IDSFSQNL-KWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhccccc-chhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 22222222 232222233333332 1133345555555556666666666666665554 33455555566655555 5
Q ss_pred HHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 350 MDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFL 398 (820)
Q Consensus 350 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 398 (820)
+++|++++.+.... |...+++.++.+++.++...
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 66666555554432 34444555555555555544
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.43 E-value=2.3e-05 Score=74.67 Aligned_cols=160 Identities=17% Similarity=0.106 Sum_probs=87.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 003433 197 SAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKG 276 (820)
Q Consensus 197 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 276 (820)
..+...+...|+-+.+..+....... ...+....+.++....+.|++.+|+..|++..... .+|...|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44445555555555555555554332 22244455555666666666666666666655432 23555666666666666
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003433 277 GVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEI 356 (820)
Q Consensus 277 g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~ 356 (820)
| +++.|..-|.+..+.... +...++.|.-.+.-.|+.+.|..++......+ .-|..+-..|.-.....|++++|..+
T Consensus 148 G-r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 G-RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred c-ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 6 666666666666554222 44455555555555666666666666555543 22455555556666666666666665
Q ss_pred HHHch
Q 003433 357 MAEMP 361 (820)
Q Consensus 357 ~~~m~ 361 (820)
...-.
T Consensus 225 ~~~e~ 229 (257)
T COG5010 225 AVQEL 229 (257)
T ss_pred ccccc
Confidence 54433
No 128
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.39 E-value=1.2e-05 Score=71.42 Aligned_cols=96 Identities=13% Similarity=0.054 Sum_probs=85.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhh
Q 003433 647 TFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWH 725 (820)
Q Consensus 647 ~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 725 (820)
..-.+..-+...|++++|.++|+-+...||.+...+.++.+.+ ..|+|.+|+..|.++..++|++ +..+..++.+|.+
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd-p~~~~~ag~c~L~ 115 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA-PQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHH
Confidence 3557777888999999999999999999999998888888777 4899999999999999999955 7779999999999
Q ss_pred cCchHHHHHHHHHhhhhh
Q 003433 726 FGQKRGAQLVVLEGKRRQ 743 (820)
Q Consensus 726 ~g~~~~A~~~~~~~~~~~ 743 (820)
.|+.++|++-|+.+.+..
T Consensus 116 lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 116 CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 999999999999887654
No 129
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.38 E-value=0.0051 Score=64.65 Aligned_cols=432 Identities=12% Similarity=0.124 Sum_probs=217.9
Q ss_pred cCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 003433 189 KNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNA 268 (820)
Q Consensus 189 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 268 (820)
.|.+...|+.|++-+..+ -+++++..++++... ++.....|..-|..-.+..+++....+|.+++..- -+...|..
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~l 91 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKL 91 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHH
Confidence 356677999999976655 999999999999886 55578899999999999999999999999998632 36777877
Q ss_pred HHHHHHcCCCCHH----HHHHHHHHHH-HCCCCCCH-HHHHHHHHH---------HHhCCCHHHHHHHHHHHHHCCCCCC
Q 003433 269 VIDACGKGGVDFK----HVVEIFDDML-RNGVQPDR-ITFNSLLAV---------CSRGGLWEAARNLFNEMVHRGIDQD 333 (820)
Q Consensus 269 ll~~~~~~g~~~~----~A~~~~~~m~-~~g~~p~~-~~~~~ll~~---------~~~~g~~~~A~~~~~~~~~~g~~~~ 333 (820)
.|.-..+...... ...+.|+-.+ +.|+.+-. ..|+..+.. |....+++..++++++++..-+..=
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 7765543321222 2233344333 34433322 224433332 3334466777888888876422111
Q ss_pred HHHHHHH------HHHH-------HhcCCHHHHHHHHHHchh--CCCCCCHHHHHHHHHHHHHcCCHHH--HHHHHHHHH
Q 003433 334 IFTYNTL------LDAI-------CKGAQMDLAFEIMAEMPA--KNISPNVVTYSTMIDGYAKAGRLDD--ALNMFSEMK 396 (820)
Q Consensus 334 ~~~~~~l------l~~~-------~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~--A~~~~~~m~ 396 (820)
...|+-. |+.. -+...+..|.++++++.. +|+..+..+ .-..|--++ ..+++...+
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n~I 244 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKNWI 244 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHHHH
Confidence 2222211 1100 112345556666665542 222211111 000011111 111121111
Q ss_pred H----CCCC-CCH--------HHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003433 397 F----LGIG-LDR--------VSYNTVLSIYAKLG-RFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMF 462 (820)
Q Consensus 397 ~----~~~~-~d~--------~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 462 (820)
+ .++. .+. .+|...+..+.-.- -+-++-..+...-+ ++...++.=.....-+++..++
T Consensus 245 ~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~--------l~~~~~d~~~a~~~t~e~~~~y 316 (656)
T KOG1914|consen 245 KWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISD--------LLTEKGDVPDAKSLTDEAASIY 316 (656)
T ss_pred HHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhH--------HHHHhcccccchhhHHHHHHHH
Confidence 1 1111 000 11111111100000 00011111111000 0000000000111145566666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003433 463 EQMKADCVSPNLLTYSTLIDVYSKG---GLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEG 539 (820)
Q Consensus 463 ~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 539 (820)
+..++.-..-+..+|..+.+---.. ...+....++++++..-..--..+|..++..-.+..-++.|..+|.++.+.+
T Consensus 317 Er~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~ 396 (656)
T KOG1914|consen 317 ERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDK 396 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhcc
Confidence 6555432233444444443321111 1245555666666543222223456666666666666777778888887776
Q ss_pred CCC-CHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCcc
Q 003433 540 IRP-NVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKK 618 (820)
Q Consensus 540 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (820)
..+ ++.++++++.-+|. ++.+-|..+++-.++.+.+.+.+ ...-++.+..++
T Consensus 397 r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~y-----------------v~~YldfL~~lN--------- 449 (656)
T KOG1914|consen 397 RTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEY-----------------VLKYLDFLSHLN--------- 449 (656)
T ss_pred CCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHH-----------------HHHHHHHHHHhC---------
Confidence 666 55566777765554 45666777777766666554311 122222222221
Q ss_pred chhhhhhHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHh
Q 003433 619 ENRCRQEILCILGVFQKMHKLKIKPNV--VTFSAILNACSRCNSFEDASMLLEELR 672 (820)
Q Consensus 619 ~~~~~~~~~~Al~~~~~m~~~~~~Pd~--~~~~~ll~a~~~~g~~~eA~~~~~~~~ 672 (820)
+-..|..+|++.+..++.||. ..|..+|+-=+.-|++..+.++-+.+.
T Consensus 450 ------dd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 450 ------DDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred ------cchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 222366688888777666653 457777777777788888777766554
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.37 E-value=0.00011 Score=83.75 Aligned_cols=136 Identities=9% Similarity=0.008 Sum_probs=100.9
Q ss_pred cCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 003433 189 KNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNA 268 (820)
Q Consensus 189 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 268 (820)
.+.+..++..|+.+..+.|++++|..+++.+....+ .+...+..++..+.+.+++++|+..+++....... +....+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P-d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFP-DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 344456777788888888888888888888877643 35677777888888888888888888888775433 5556666
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 003433 269 VIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHR 328 (820)
Q Consensus 269 ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 328 (820)
+..++.+.| ++++|..+|+++...+.. +..++..+...+...|+.++|...|++..+.
T Consensus 160 ~a~~l~~~g-~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 160 EAKSWDEIG-QSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHhc-chHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 667777788 888888888888874332 4677777788888888888888888887765
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.37 E-value=3.7e-05 Score=87.37 Aligned_cols=159 Identities=11% Similarity=0.095 Sum_probs=131.0
Q ss_pred hHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003433 141 SLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETAL 220 (820)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 220 (820)
++.++++-...-...++.+..|.....+.|.+++|..+++.++... |++..+...++.++.+.+++++|+..+++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~---Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l 147 (694)
T PRK15179 71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF---PDSSEAFILMLRGVKRQQGIEAGRAEIELYF 147 (694)
T ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC---CCcHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 3334444444344457888899999999999999999999999884 6777889999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHH
Q 003433 221 NEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRI 300 (820)
Q Consensus 221 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~ 300 (820)
...+. +....+.+..++.+.|++++|.++|+++...+.. +..++..+..++...| +.++|...|++.++. ..+...
T Consensus 148 ~~~p~-~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G-~~~~A~~~~~~a~~~-~~~~~~ 223 (694)
T PRK15179 148 SGGSS-SAREILLEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRG-ALWRARDVLQAGLDA-IGDGAR 223 (694)
T ss_pred hcCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh-hCcchH
Confidence 88644 7888999999999999999999999999984432 5788899999999999 999999999999875 233445
Q ss_pred HHHHHH
Q 003433 301 TFNSLL 306 (820)
Q Consensus 301 ~~~~ll 306 (820)
.|+.++
T Consensus 224 ~~~~~~ 229 (694)
T PRK15179 224 KLTRRL 229 (694)
T ss_pred HHHHHH
Confidence 555443
No 132
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.31 E-value=5e-05 Score=68.82 Aligned_cols=88 Identities=10% Similarity=-0.021 Sum_probs=34.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003433 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYD 456 (820)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 456 (820)
..+.+.|++++|...|+...... +.+...|..+..++.+.|++++|+..|++..+.. +.+...+..+..++.+.|+.+
T Consensus 32 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHH
Confidence 33333444444444444433332 2233333334444444444444444444443332 233333333444444444444
Q ss_pred HHHHHHHHHH
Q 003433 457 EVRRMFEQMK 466 (820)
Q Consensus 457 ~A~~~~~~m~ 466 (820)
+|+..|+..+
T Consensus 110 eAi~~~~~Al 119 (144)
T PRK15359 110 LAREAFQTAI 119 (144)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.30 E-value=9e-06 Score=73.26 Aligned_cols=110 Identities=12% Similarity=0.090 Sum_probs=91.9
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCC
Q 003433 632 VFQKMHKLKIKPNV-VTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDS 709 (820)
Q Consensus 632 ~~~~m~~~~~~Pd~-~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~ 709 (820)
.|++.+. ..|+. .....++..+...|++++|.+.|+.+...+|.+..++..+...+ ..+++++|..+++++++.+|
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5666665 56644 44678888999999999999999999998998877776665555 57899999999999999999
Q ss_pred CcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhh
Q 003433 710 STASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQV 744 (820)
Q Consensus 710 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 744 (820)
.+ ...+..++.+|...|++++|..+++.+.+...
T Consensus 83 ~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 83 DD-PRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred CC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 65 67788899999999999999999988876653
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.30 E-value=0.00076 Score=70.18 Aligned_cols=140 Identities=18% Similarity=0.150 Sum_probs=93.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003433 378 GYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDE 457 (820)
Q Consensus 378 ~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 457 (820)
.+...|++++|+..+..++..- +-|........+.+.+.++..+|.+.++++.... +-....+..+..+|.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHH
Confidence 4456677777777777776652 3334444555567777777777777777777654 2225666667777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 458 VRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 458 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
|+.+++..... .+-|...|..|..+|...|+..+|.....+ +|...|++++|+..+....+
T Consensus 393 ai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHH
Confidence 77777776655 355677777777777777777666654333 35567777777777777766
Q ss_pred C
Q 003433 538 E 538 (820)
Q Consensus 538 ~ 538 (820)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 4
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.0015 Score=62.58 Aligned_cols=171 Identities=13% Similarity=0.143 Sum_probs=90.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003433 321 LFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGI 400 (820)
Q Consensus 321 ~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 400 (820)
+.+.+.......+......-...|+..|++++|++...... +....-.=+..+.+..+++-|.+.+++|.+..
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id- 167 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID- 167 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 33444443333333333334455666777777777766522 22233333344556666677777777776542
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003433 401 GLDRVSYNTVLSIYAK----LGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLT 476 (820)
Q Consensus 401 ~~d~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 476 (820)
+..|.+.|..++.+ .+.+.+|.-+|++|.++- .|+..+.+-...++...|++++|..++++.+.+. ..+..+
T Consensus 168 --ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpet 243 (299)
T KOG3081|consen 168 --EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPET 243 (299)
T ss_pred --hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHH
Confidence 44555555554443 234666666666665432 5666666666666666666666666666666553 234455
Q ss_pred HHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 003433 477 YSTLIDVYSKGGLYKEA-MQIFREFKQ 502 (820)
Q Consensus 477 ~~~li~~~~~~g~~~~A-~~~~~~m~~ 502 (820)
...+|..-...|...++ .+...++..
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 54454444444443332 334444443
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.19 E-value=0.00044 Score=71.88 Aligned_cols=155 Identities=15% Similarity=0.095 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 003433 335 FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD-RVSYNTVLSI 413 (820)
Q Consensus 335 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d-~~~~~~li~~ 413 (820)
.......-.+...|++++|+..++.++..-. -|...+....+.+.+.|+.++|.+.++++... .|+ ......+..+
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~a 383 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHH
Confidence 3344455566788999999999999887643 36667777889999999999999999999987 555 6677788899
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003433 414 YAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEA 493 (820)
Q Consensus 414 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 493 (820)
|.+.|+..+|+.+++...... +.|+..|..|..+|...|+..++..-..+ +|...|++++|
T Consensus 384 ll~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A 444 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQA 444 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHH
Confidence 999999999999999987765 78899999999999999998888766554 45668999999
Q ss_pred HHHHHHHHHCCCCCCHHHH
Q 003433 494 MQIFREFKQAGLKADVVLY 512 (820)
Q Consensus 494 ~~~~~~m~~~~~~p~~~~~ 512 (820)
+..+....+.. +.+..+|
T Consensus 445 ~~~l~~A~~~~-~~~~~~~ 462 (484)
T COG4783 445 IIFLMRASQQV-KLGFPDW 462 (484)
T ss_pred HHHHHHHHHhc-cCCcHHH
Confidence 99998887653 3344444
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.0029 Score=60.15 Aligned_cols=186 Identities=15% Similarity=0.165 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHHHH---CC-CCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003433 279 DFKHVVEIFDDMLR---NG-VQPDRIT-FNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLA 353 (820)
Q Consensus 279 ~~~~A~~~~~~m~~---~g-~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A 353 (820)
+.++.++++.+++. .| ..++..+ |..++-+....|+.+.|..+++++.+. ++.+..+-..-...+-..|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhH
Confidence 56677777776653 23 4445444 444555566677888888888877665 222323322223334456777777
Q ss_pred HHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 354 FEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS 433 (820)
Q Consensus 354 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 433 (820)
+++++.+.+.+. .|.+++---+.+.-..|+--+|++.+.+..+. +..|...|.-+...|...|++++|.-.+++++-.
T Consensus 106 ~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 777777777653 35666666666666667666777766666554 2556677777777777777777777777776543
Q ss_pred CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHC
Q 003433 434 GIRKDAVTYNALLGGYGKQG---KYDEVRRMFEQMKAD 468 (820)
Q Consensus 434 ~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 468 (820)
. +-+...+..+...+.-.| +++-|.++|.+.++.
T Consensus 184 ~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 184 Q-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 3 334444444444433332 334455555555543
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.14 E-value=9.9e-05 Score=66.41 Aligned_cols=97 Identities=24% Similarity=0.182 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 439 AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDA 518 (820)
Q Consensus 439 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 518 (820)
......+...+.+.|++++|.+.|+.+...+ +.+...+..+...|.+.|++++|..+|+...+.+. .+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 3444455556666666666666666665542 33555566666666666666666666666655542 245555556666
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 003433 519 LCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 519 ~~~~g~~~~A~~~~~~m~~ 537 (820)
|...|++++|+..|++..+
T Consensus 95 ~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666665
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.0023 Score=60.78 Aligned_cols=190 Identities=12% Similarity=0.122 Sum_probs=122.0
Q ss_pred CCCHHHHHHHHHHHHHcccc---cCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 003433 169 RGEWSKAIQCFAFAVKREER---KNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQ 245 (820)
Q Consensus 169 ~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 245 (820)
..+.++.++++..++..... .++.-.++..++-+....|+.+.|...+..+..+ ++.+..+-..-...+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 34667777777776643211 1222345666777777788888888888887665 3333333333333445578888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 003433 246 EAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEM 325 (820)
Q Consensus 246 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 325 (820)
+|+++++.+.+.+. -|.++|-.=+...-..| .--+|++-+.+..+. +.-|...|.-|...|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~ddp-t~~v~~KRKlAilka~G-K~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDDP-TDTVIRKRKLAILKAQG-KNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccCc-chhHHHHHHHHHHHHcC-CcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 88888888887653 26666766666666666 445677666666655 4457888888888888888888888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHchhC
Q 003433 326 VHRGIDQDIFTYNTLLDAICKGA---QMDLAFEIMAEMPAK 363 (820)
Q Consensus 326 ~~~g~~~~~~~~~~ll~~~~~~g---~~~~A~~~~~~m~~~ 363 (820)
+-.. +.+...+..+.+.+.-.| +++.|.+.|.+.++.
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 7653 334555555666554444 455677777776665
No 140
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=0.00017 Score=72.81 Aligned_cols=289 Identities=11% Similarity=0.036 Sum_probs=144.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003433 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYD 456 (820)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 456 (820)
..+.+..++.+|+..+...++.. +-+..-|..-+..+...|++++|.--.+.-++.. +-....+.-.-+++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHH
Confidence 34555666666777777666663 2233444455555556666666655554443321 111223333334444444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHH-HHHHHcCCHHHHHHHHHH
Q 003433 457 EVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL-KADVVLYSALI-DALCKNGLVESAVSLLDE 534 (820)
Q Consensus 457 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li-~~~~~~g~~~~A~~~~~~ 534 (820)
+|.+.++. ...+ ....|+..++.+..... +|...+|..|- .++...|++++|..+--.
T Consensus 135 ~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 135 EAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 44444441 0000 11122222222222111 13344554442 344556677777666555
Q ss_pred HHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHH-Hh
Q 003433 535 MTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAE-KA 613 (820)
Q Consensus 535 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 613 (820)
.++..- -+......-..++.-.++.+.|+..+.+++...|+....- .+..+..++... ..
T Consensus 195 ilkld~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk------------------~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 195 ILKLDA-TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSK------------------SASMMPKKLEVKKER 255 (486)
T ss_pred HHhccc-chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHH------------------hHhhhHHHHHHHHhh
Confidence 554311 1111222222234556667777777777777666542110 011111111100 01
Q ss_pred cCCccchhhhhhHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-
Q 003433 614 GQGKKENRCRQEILCILGVFQKMHKL---KIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY- 689 (820)
Q Consensus 614 ~~~~~~~~~~~~~~~Al~~~~~m~~~---~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~- 689 (820)
|. +....|++.+|.+.|.+.+.. .++|+...|.....+..+.|+..||+.--++++++|+.-...+..-...+
T Consensus 256 gN---~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 256 GN---DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred hh---hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 11 122335677788888888762 13334555777777788899999999888888877775333221111111
Q ss_pred ccchHHHHHHHHHHHhhcCC
Q 003433 690 RDNIWVQALSLFDEVKLMDS 709 (820)
Q Consensus 690 ~~~~~~~A~~~~~~~~~~~~ 709 (820)
.-+.|++|.+.|+++.+.+-
T Consensus 333 ~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 35689999999999887655
No 141
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.03 E-value=4.4e-05 Score=74.22 Aligned_cols=106 Identities=14% Similarity=0.179 Sum_probs=90.4
Q ss_pred hhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHH
Q 003433 622 CRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALS 699 (820)
Q Consensus 622 ~~~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~ 699 (820)
..++|++|+..|.+.++ +.| |.+.|..=..+|++.|.++.|++-.+.++.+||...-.+-.+...+ ..|++++|++
T Consensus 93 ~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 34589999999999998 777 6777889999999999999999999999999998777777776666 5899999999
Q ss_pred HHHHHhhcCCCcchhHHHHHHHHHhhcCchH
Q 003433 700 LFDEVKLMDSSTASAFYNALTDMLWHFGQKR 730 (820)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 730 (820)
.|+++++++|++ ..+...|-++--+.++..
T Consensus 171 aykKaLeldP~N-e~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 171 AYKKALELDPDN-ESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHhhhccCCCc-HHHHHHHHHHHHHhcCCC
Confidence 999999999965 677888887766666555
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.91 E-value=0.00035 Score=73.48 Aligned_cols=119 Identities=15% Similarity=0.184 Sum_probs=58.1
Q ss_pred HHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 003433 341 LDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRF 420 (820)
Q Consensus 341 l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~ 420 (820)
+..+...++++.|+++|+++.+.. |+ ....++..+...++-.+|++++++..+.. +-|......-...|.+.+++
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 333444455555555555555442 22 22234444445555555555555555432 23444444444455555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003433 421 EEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQM 465 (820)
Q Consensus 421 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 465 (820)
+.|+.+.+++.+.. +-+..+|..|..+|.+.|++++|+..++.+
T Consensus 251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 55555555555443 233445555555555555555555555543
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.89 E-value=0.00069 Score=61.63 Aligned_cols=116 Identities=20% Similarity=0.247 Sum_probs=59.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHH
Q 003433 417 LGRFEEALLVCKEMESSGIRKD---AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNL--LTYSTLIDVYSKGGLYK 491 (820)
Q Consensus 417 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~ 491 (820)
.++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......++. .....|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 555566655566555433 222 122233445556666666666666666654311211 22334455556666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003433 492 EAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEM 535 (820)
Q Consensus 492 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 535 (820)
+|+..++...... .....+....+.|.+.|+.++|...|++.
T Consensus 103 ~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6666665432221 23344555566666666666666666543
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.89 E-value=0.00037 Score=60.94 Aligned_cols=103 Identities=15% Similarity=0.061 Sum_probs=76.8
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGN--TVYAFSA 233 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ 233 (820)
++.+..++..+.+.|++++|++.|+.++...+..+....++..++.++.+.|+++.|...|+.+....+.. ...++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 35566677778888999999999988887643322223456678888888899999999998887753221 2456778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC
Q 003433 234 LISAYGRSGYCQEAISVFNSMKRYN 258 (820)
Q Consensus 234 li~~~~~~g~~~~A~~~~~~m~~~~ 258 (820)
+..++.+.|+.++|...++++.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 8888888888888888888888754
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.85 E-value=0.00042 Score=63.05 Aligned_cols=118 Identities=17% Similarity=0.099 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhH
Q 003433 169 RGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT--VYAFSALISAYGRSGYCQE 246 (820)
Q Consensus 169 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~ 246 (820)
.+++..+...++.+....+..+-.....-.+...+...|++++|...|+.+......++ ..+...|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45555555555555544322211122233344555555555555555555555432211 1233334445555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 003433 247 AISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDD 289 (820)
Q Consensus 247 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~ 289 (820)
|+..++...... .....+......+.+.| +.++|...|+.
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g-~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQG-DYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 555554432211 12223334444445555 55555555443
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.83 E-value=0.00061 Score=71.72 Aligned_cols=125 Identities=14% Similarity=0.144 Sum_probs=83.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003433 407 YNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK 486 (820)
Q Consensus 407 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 486 (820)
...|+..+...++++.|+.+|+++.+.. |+ ....++..+...++-.+|.+++.+.+... +.+...+..-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3445556666677777777777776543 33 33346666666777777777777766542 3455555555666777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 487 GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 487 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
.++++.|+++.+++.+..+. +..+|..|..+|.+.|++++|+..++.+-.
T Consensus 247 k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 77778888887777775432 556777788888888888888777776653
No 147
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.001 Score=67.51 Aligned_cols=292 Identities=10% Similarity=0.007 Sum_probs=142.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcC
Q 003433 304 SLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAG 383 (820)
Q Consensus 304 ~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 383 (820)
.....+.+..++..|+..+...++.. +.++..|..-+..+...|++++|.--.+.-.+.... ......-.-.++...+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALS 131 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhH
Confidence 34455666666666666666666654 223455555555566666666665555444332111 1112222333333334
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHH-HHHHHhcCCHHHHHHH
Q 003433 384 RLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI-RKDAVTYNAL-LGGYGKQGKYDEVRRM 461 (820)
Q Consensus 384 ~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l-i~~~~~~g~~~~A~~~ 461 (820)
+..+|.+.++ +...| ....|+..++.+..... +|.-.+|..+ ..++.-.|++++|..+
T Consensus 132 ~~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 132 DLIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 4444433333 11111 11122222222222111 1223344333 3345566677776666
Q ss_pred HHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003433 462 FEQMKADCVSPNLLTYSTLID--VYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEG 539 (820)
Q Consensus 462 ~~~m~~~~~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 539 (820)
--.+++.. ..-.+..+++ ++.-.++.+.|...|++.+..+ |+... .+..-.-.+.++.+.+.|
T Consensus 192 a~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~----------sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 192 AIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQK----------SKSASMMPKKLEVKKERG 256 (486)
T ss_pred HHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhh----------HHhHhhhHHHHHHHHhhh
Confidence 65555432 1112222222 2334566667777776666543 33221 111112223333344332
Q ss_pred CCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccc
Q 003433 540 IRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKE 619 (820)
Q Consensus 540 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (820)
+-..+.|.+..|.+.|.+++...|++. ......|+..+..
T Consensus 257 ------------N~~fk~G~y~~A~E~Yteal~idP~n~--------------------~~naklY~nra~v-------- 296 (486)
T KOG0550|consen 257 ------------NDAFKNGNYRKAYECYTEALNIDPSNK--------------------KTNAKLYGNRALV-------- 296 (486)
T ss_pred ------------hhHhhccchhHHHHHHHHhhcCCcccc--------------------chhHHHHHHhHhh--------
Confidence 345688999999999999998887653 1223334322211
Q ss_pred hhhhhhHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHhhc
Q 003433 620 NRCRQEILCILGVFQKMHKLKIKPNVV-TFSAILNACSRCNSFEDASMLLEELRLF 674 (820)
Q Consensus 620 ~~~~~~~~~Al~~~~~m~~~~~~Pd~~-~~~~ll~a~~~~g~~~eA~~~~~~~~~~ 674 (820)
....++..+|+.--++.+. ++|..+ .|..-..++...++|++|.+-|+++.+.
T Consensus 297 ~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 297 NIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1222355667777776655 443211 2333344555668999999999987754
No 148
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.81 E-value=0.00023 Score=75.36 Aligned_cols=93 Identities=11% Similarity=-0.005 Sum_probs=74.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCch
Q 003433 651 ILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQK 729 (820)
Q Consensus 651 ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 729 (820)
-+..+...|++++|+++|++++..+|.+..+..++...+ ..|++++|+..++++++++|.+ ...|..++.+|.+.|++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHhCCH
Confidence 345666788999999999999888888877666554444 5788899999999999999855 66688899999999999
Q ss_pred HHHHHHHHHhhhhhh
Q 003433 730 RGAQLVVLEGKRRQV 744 (820)
Q Consensus 730 ~~A~~~~~~~~~~~~ 744 (820)
++|+..++++.+...
T Consensus 87 ~eA~~~~~~al~l~P 101 (356)
T PLN03088 87 QTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999988877654
No 149
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.80 E-value=3.8e-05 Score=50.12 Aligned_cols=33 Identities=52% Similarity=0.920 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003433 511 LYSALIDALCKNGLVESAVSLLDEMTKEGIRPN 543 (820)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 543 (820)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677888888888888888888888887777776
No 150
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.79 E-value=0.0063 Score=60.42 Aligned_cols=69 Identities=12% Similarity=0.088 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGY 224 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 224 (820)
++.+-.....+.+.|++++|++.|+.++...+..+....+...++.++.+.+++++|...|++.++..+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 444444555666677777777777777776443332222334566777777777777777777776543
No 151
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.74 E-value=0.0033 Score=64.40 Aligned_cols=140 Identities=18% Similarity=0.275 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHccccc---CChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERK---NDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSA 233 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 233 (820)
+.|......|...++|++|.+.|.++....... ......|...+.+|.+. ++++|...++++
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A-------------- 100 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA-------------- 100 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH--------------
Confidence 345666777777788888888887775432111 11122333334433332 555555444444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHH
Q 003433 234 LISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKG-GVDFKHVVEIFDDMLRN----GVQ-PDRITFNSLLA 307 (820)
Q Consensus 234 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-g~~~~~A~~~~~~m~~~----g~~-p~~~~~~~ll~ 307 (820)
+..|...|++..|-.++.++- ..|-.. | ++++|++.|++..+. |-. --..++..+..
T Consensus 101 -~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~-d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 101 -IEIYREAGRFSQAAKCLKELA---------------EIYEEQLG-DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp -HHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred -HHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcC-CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 335556666666655555443 234444 5 666666666666532 100 00223344455
Q ss_pred HHHhCCCHHHHHHHHHHHHHC
Q 003433 308 VCSRGGLWEAARNLFNEMVHR 328 (820)
Q Consensus 308 ~~~~~g~~~~A~~~~~~~~~~ 328 (820)
.+.+.|++++|.++|+++...
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHH
Confidence 556666666666666665543
No 152
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.74 E-value=0.0001 Score=57.20 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=25.3
Q ss_pred cchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcC-chHHHHHHHHHhhh
Q 003433 691 DNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFG-QKRGAQLVVLEGKR 741 (820)
Q Consensus 691 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 741 (820)
.+++++|+..|+++++.+|++ +..|..++.+|.+.| ++++|.+.++++.+
T Consensus 16 ~~~~~~A~~~~~~ai~~~p~~-~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 16 QGDYEEAIEYFEKAIELDPNN-AEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp TTHHHHHHHHHHHHHHHSTTH-HHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344444444444444555532 344555555555555 45555555555443
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.70 E-value=0.00032 Score=58.00 Aligned_cols=94 Identities=14% Similarity=0.154 Sum_probs=75.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhh
Q 003433 647 TFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWH 725 (820)
Q Consensus 647 ~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 725 (820)
++..++..+...|++++|...|+++.+..+.+..+...+...+ ..+++++|...++++++..|.. ...+..++.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-AKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHHH
Confidence 3556777888899999999999999888777654444443333 5688999999999999998865 4668899999999
Q ss_pred cCchHHHHHHHHHhhh
Q 003433 726 FGQKRGAQLVVLEGKR 741 (820)
Q Consensus 726 ~g~~~~A~~~~~~~~~ 741 (820)
.|++++|..++..+.+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 9999999999877654
No 154
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.69 E-value=6.5e-05 Score=48.98 Aligned_cols=33 Identities=55% Similarity=0.863 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003433 371 TYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD 403 (820)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d 403 (820)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344555555555555555555555554444443
No 155
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.67 E-value=6.6e-05 Score=48.61 Aligned_cols=33 Identities=39% Similarity=0.699 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003433 510 VLYSALIDALCKNGLVESAVSLLDEMTKEGIRP 542 (820)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 542 (820)
.+|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466677777777777777777777777666665
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.64 E-value=0.001 Score=70.47 Aligned_cols=103 Identities=14% Similarity=0.084 Sum_probs=80.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 241 (820)
....+...|++++|+++|+++++.+ +.+..++..++.+|.+.|++++|+..+++++.... .+...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~---P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD---PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHh
Confidence 3455677889999999999998875 44556888888899999999999999999988754 3677888888899999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003433 242 GYCQEAISVFNSMKRYNLKPNLVTYNAVI 270 (820)
Q Consensus 242 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 270 (820)
|++++|+..|++..+. .|+......++
T Consensus 84 g~~~eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 9999999999988874 35444433333
No 157
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.64 E-value=0.0028 Score=64.07 Aligned_cols=128 Identities=12% Similarity=-0.038 Sum_probs=74.6
Q ss_pred cCCccchhhhhhHHHHHHHHHHHH----HCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHh----hcCCchhHHH--
Q 003433 614 GQGKKENRCRQEILCILGVFQKMH----KLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELR----LFDNQVYGVA-- 682 (820)
Q Consensus 614 ~~~~~~~~~~~~~~~Al~~~~~m~----~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~~~~~----~~~~~~~~~~-- 682 (820)
|.....+.+.|+++.|+..-+.=+ +.|-+. ....+..|++++.-.|+++.|.+.|...+ ++........
T Consensus 199 GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQsc 278 (639)
T KOG1130|consen 199 GNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSC 278 (639)
T ss_pred cccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 444444566678888876544322 233222 24458889999999999999999988754 2232222221
Q ss_pred HHHHhcc-ccchHHHHHHHHHHHhhcC-----CCcchhHHHHHHHHHhhcCchHHHHHHHHHhhh
Q 003433 683 HGLLMGY-RDNIWVQALSLFDEVKLMD-----SSTASAFYNALTDMLWHFGQKRGAQLVVLEGKR 741 (820)
Q Consensus 683 ~~~~~~~-~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 741 (820)
+++...| -...+++|+.++.+=+.+- -.-....|-+|++.+-..|..+.|..+....++
T Consensus 279 YSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 279 YSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1122222 1345677777776644321 001134577788888888888888877665543
No 158
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.63 E-value=0.0022 Score=55.26 Aligned_cols=111 Identities=22% Similarity=0.115 Sum_probs=73.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHH
Q 003433 160 TFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG--NTVYAFSALISA 237 (820)
Q Consensus 160 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~ 237 (820)
..+...+-..|+.++|+.+|++++..+.....-..++..+...+...|++++|..++++.....+. .+......+..+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 345566777888888888888888866443333456777888888888888888888888765221 122333334456
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003433 238 YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG 274 (820)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 274 (820)
+...|+.++|++++-.... ++...|.--|..|.
T Consensus 85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 6777888888888776654 34446665555554
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.63 E-value=0.0026 Score=59.85 Aligned_cols=91 Identities=23% Similarity=0.222 Sum_probs=56.2
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003433 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (820)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 237 (820)
.+..+...+...|++++|+..|++++......+....++..++.++.+.|++++|+..++++++... .+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 4555666667777777777777777765432222234666677777777777777777777766532 245556666666
Q ss_pred HHhcCChhHHHH
Q 003433 238 YGRSGYCQEAIS 249 (820)
Q Consensus 238 ~~~~g~~~~A~~ 249 (820)
|...|+...+..
T Consensus 116 ~~~~g~~~~a~~ 127 (172)
T PRK02603 116 YHKRGEKAEEAG 127 (172)
T ss_pred HHHcCChHhHhh
Confidence 666666544443
No 160
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.61 E-value=0.12 Score=53.53 Aligned_cols=419 Identities=13% Similarity=0.103 Sum_probs=217.8
Q ss_pred HHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003433 145 ILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGY 224 (820)
Q Consensus 145 ~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 224 (820)
+-+.+..++.+.-+|..|+..|...+.+++.+++++++...- |-...++..-+..-...+++.....+|.+.+...
T Consensus 31 LRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf---p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~- 106 (660)
T COG5107 31 LRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPF---PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS- 106 (660)
T ss_pred HHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC---ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh-
Confidence 344455566666788999999999999999999999998653 3333477777777777789999999999988753
Q ss_pred CCCHHHHHHHHHHHHhcCChh------HHHHHHHHHHh-CCCCC-CHHHHHHHHHHHH---cCC-----CCHHHHHHHHH
Q 003433 225 GNTVYAFSALISAYGRSGYCQ------EAISVFNSMKR-YNLKP-NLVTYNAVIDACG---KGG-----VDFKHVVEIFD 288 (820)
Q Consensus 225 ~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~-~~~~p-~~~~~~~ll~~~~---~~g-----~~~~~A~~~~~ 288 (820)
.+...|...+..-.+....- .-.+.|+-... .++.| ....|+..+.-+- ..| .+.+.....|.
T Consensus 107 -l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 107 -LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred -ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 46778887777555443211 11223333222 23444 2334444443321 112 03556666777
Q ss_pred HHHHCCCCC------CHHHHHHHHHHH-Hh------CCCHHHHHHHHHHHHH--CCCC----CCHHHH-----------H
Q 003433 289 DMLRNGVQP------DRITFNSLLAVC-SR------GGLWEAARNLFNEMVH--RGID----QDIFTY-----------N 338 (820)
Q Consensus 289 ~m~~~g~~p------~~~~~~~ll~~~-~~------~g~~~~A~~~~~~~~~--~g~~----~~~~~~-----------~ 338 (820)
+|+..-+.- |-..|..=++-. ++ .--+-.|.+.++++.. .|+. .+..++ -
T Consensus 186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~Wl 265 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWL 265 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhh
Confidence 776532210 001111111111 00 1123445555555532 1221 111122 1
Q ss_pred HHHHHHHhc-----CC-HHH-HHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------
Q 003433 339 TLLDAICKG-----AQ-MDL-AFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRV------ 405 (820)
Q Consensus 339 ~ll~~~~~~-----g~-~~~-A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~------ 405 (820)
.+|+.-... |+ ... .--++++.... +.-....|---...+...++-+.|+.....-... .|...
T Consensus 266 NwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL~~~lse~ 342 (660)
T COG5107 266 NWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSLTMFLSEY 342 (660)
T ss_pred hHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCchheeHHHH
Confidence 222221111 11 111 11122222211 0112222322223333444444444443332211 11100
Q ss_pred ------------HHH----HHHHHHHHcCCHHHHHHH------HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003433 406 ------------SYN----TVLSIYAKLGRFEEALLV------CKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFE 463 (820)
Q Consensus 406 ------------~~~----~li~~~~~~g~~~~A~~~------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 463 (820)
+|. .|..-|. .++-+.+... ..++.-.....-..+|...+....+..-++.|+.+|-
T Consensus 343 yel~nd~e~v~~~fdk~~q~L~r~ys-~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~ 421 (660)
T COG5107 343 YELVNDEEAVYGCFDKCTQDLKRKYS-MGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFI 421 (660)
T ss_pred HhhcccHHHHhhhHHHHHHHHHHHHh-hhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 000 1111111 1111111111 1111100011234567777777778888888999999
Q ss_pred HHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003433 464 QMKADC-VSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLY-SALIDALCKNGLVESAVSLLDEMTKEGIR 541 (820)
Q Consensus 464 ~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 541 (820)
+..+.+ +.+++..+++++..++ .|+..-|.++|+--... -||...| +-.+..+...++-+.|..+|+..+.. +.
T Consensus 422 k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~ 497 (660)
T COG5107 422 KLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LE 497 (660)
T ss_pred HHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HH
Confidence 888887 6778888888888776 57778888888765543 2344443 45667778888888888888866543 23
Q ss_pred CC--HHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhh
Q 003433 542 PN--VVTYNSIIDAFGRSATTECTVDDVERDLGKQKE 576 (820)
Q Consensus 542 p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~ 576 (820)
-+ ..+|..+|+-=..-|++..+..+-++..+..|.
T Consensus 498 ~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 498 KTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 23 457888888777788887777665555554443
No 161
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.59 E-value=9.3e-05 Score=47.88 Aligned_cols=33 Identities=30% Similarity=0.576 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 003433 229 YAFSALISAYGRSGYCQEAISVFNSMKRYNLKP 261 (820)
Q Consensus 229 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 261 (820)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666655554
No 162
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.58 E-value=0.0077 Score=61.72 Aligned_cols=151 Identities=13% Similarity=0.194 Sum_probs=79.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc-CchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhc
Q 003433 517 DALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRS-ATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAG 595 (820)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 595 (820)
..|...|++..|-+++.++ ...|... |++++|++.++++++.+....... ...
T Consensus 102 ~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~-----------~a~ 155 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPH-----------SAA 155 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HH-----------HHH
T ss_pred HHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChh-----------hHH
Confidence 3566666666666555554 3456666 889999999998888765432100 001
Q ss_pred cchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHhccCCHHHHHHHHH
Q 003433 596 RTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIK-----PNVV-TFSAILNACSRCNSFEDASMLLE 669 (820)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~-----Pd~~-~~~~ll~a~~~~g~~~eA~~~~~ 669 (820)
.+...+..++.+ .+++++|+++|++....-.+ .+.. .|...+-.+...|+...|.+.|+
T Consensus 156 ~~~~~~A~l~~~---------------l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~ 220 (282)
T PF14938_consen 156 ECLLKAADLYAR---------------LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALE 220 (282)
T ss_dssp HHHHHHHHHHHH---------------TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHH---------------hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 222333333332 24889999999998764332 1221 22333335556788999999998
Q ss_pred HHhhcCCc-----hhHHHHHHHhccccc---hHHHHHHHHHHHhhcC
Q 003433 670 ELRLFDNQ-----VYGVAHGLLMGYRDN---IWVQALSLFDEVKLMD 708 (820)
Q Consensus 670 ~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~ 708 (820)
+....+|. .+..+..++.++..+ .+.+|..-|+++.++|
T Consensus 221 ~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 221 RYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred HHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence 88766542 233333444444322 3444444444444443
No 163
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.57 E-value=0.0012 Score=66.61 Aligned_cols=29 Identities=14% Similarity=0.001 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHh
Q 003433 644 NVVTFSAILNACSRCNSFEDASMLLEELR 672 (820)
Q Consensus 644 d~~~~~~ll~a~~~~g~~~eA~~~~~~~~ 672 (820)
....+-+|+++|...|..++|..+.+..+
T Consensus 314 e~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 314 ELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45667788999999898898888776654
No 164
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.56 E-value=0.00082 Score=65.63 Aligned_cols=102 Identities=20% Similarity=0.233 Sum_probs=80.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003433 163 LRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSG 242 (820)
Q Consensus 163 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 242 (820)
..-+.+.++|++|+..|..++... |.+...|..-..+|.+.|.++.|++-.+.++..+.. ...+|..|..+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~---P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD---PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC---CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccC
Confidence 445677888999999999988874 566778888888899999999998888888876432 4678888888899999
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003433 243 YCQEAISVFNSMKRYNLKPNLVTYNAVI 270 (820)
Q Consensus 243 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll 270 (820)
++++|++.|++.++ +.|+..+|-.=|
T Consensus 164 k~~~A~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 164 KYEEAIEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred cHHHHHHHHHhhhc--cCCCcHHHHHHH
Confidence 99999988888887 567776665433
No 165
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.56 E-value=0.0014 Score=54.12 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=8.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 003433 410 VLSIYAKLGRFEEALLVCKEM 430 (820)
Q Consensus 410 li~~~~~~g~~~~A~~~~~~~ 430 (820)
+...+...|++++|.+.++..
T Consensus 40 ~~~~~~~~~~~~~a~~~~~~~ 60 (100)
T cd00189 40 LAAAYYKLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444333333
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.55 E-value=0.00018 Score=58.28 Aligned_cols=48 Identities=17% Similarity=0.244 Sum_probs=29.3
Q ss_pred ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHh
Q 003433 690 RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEG 739 (820)
Q Consensus 690 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 739 (820)
+.|++++|..++++ .+.++.+ ......++.+|.+.|++++|+++++++
T Consensus 37 ~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 37 QQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 34444555555544 3334423 333556689999999999999988753
No 167
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.54 E-value=0.0088 Score=57.85 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEG 223 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 223 (820)
++.+-.....+.+.|++.+|++.|+.+....+..+-...+...++.++.+.|+++.|...++..++.-
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34455566777888999999999999988766555556677788889999999999999999887763
No 168
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.53 E-value=0.0003 Score=57.00 Aligned_cols=82 Identities=15% Similarity=0.184 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 003433 169 RGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAI 248 (820)
Q Consensus 169 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 248 (820)
.|+++.|+.+|++++......+ +...+..++.+|.+.|++++|..+++. .+.+. .+......+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 5788899999998888764211 333455588888899999999988877 33322 24455556688888888999888
Q ss_pred HHHHH
Q 003433 249 SVFNS 253 (820)
Q Consensus 249 ~~~~~ 253 (820)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88875
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.52 E-value=0.0057 Score=57.50 Aligned_cols=89 Identities=13% Similarity=0.128 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 003433 474 LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD--VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYNSI 550 (820)
Q Consensus 474 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 550 (820)
...+..+...|...|++++|...|++..+....+. ...+..+...+.+.|++++|+..++++++. .|+ ...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 34556666677777777777777777765433222 356777777888888888888888888774 333 4455666
Q ss_pred HHHHhhcCchhhhH
Q 003433 551 IDAFGRSATTECTV 564 (820)
Q Consensus 551 l~~~~~~g~~~~a~ 564 (820)
..++...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 66666666655443
No 170
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.51 E-value=0.0015 Score=69.01 Aligned_cols=122 Identities=16% Similarity=0.129 Sum_probs=67.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003433 401 GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS--GIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYS 478 (820)
Q Consensus 401 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 478 (820)
+.+......+++.+....+++++..++.+.... ....-..|..+++..|.+.|..++++.+++.=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445555555555555555566666666555443 111122334466666666666666666666666666666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003433 479 TLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKN 522 (820)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 522 (820)
.||+.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666666666655444444444544444444443
No 171
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.50 E-value=0.0016 Score=69.00 Aligned_cols=124 Identities=16% Similarity=0.140 Sum_probs=105.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003433 434 GIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC--VSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVL 511 (820)
Q Consensus 434 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 511 (820)
+.+........+++.+....+++++..++-+..... ..--..|..+++..|.+.|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 336677888888999988899999999999887652 222234557999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc
Q 003433 512 YSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRS 557 (820)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 557 (820)
+|.|++.+.+.|++..|.++..+|...+...+..|+.--+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998887777878887777777665
No 172
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0016 Score=64.17 Aligned_cols=118 Identities=10% Similarity=0.037 Sum_probs=94.8
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc----ccchHHHHHHHHHH
Q 003433 629 ILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY----RDNIWVQALSLFDE 703 (820)
Q Consensus 629 Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~A~~~~~~ 703 (820)
.+.-++.=+. -+| |...|..|+.+|...|++++|...|..+..+.+++..+.-++.-.+ ...+-.+|..++++
T Consensus 141 l~a~Le~~L~--~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 141 LIARLETHLQ--QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred HHHHHHHHHH--hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 3333444333 356 6778999999999999999999999999999998888776653322 24466799999999
Q ss_pred HhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhhhhhh
Q 003433 704 VKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVW 749 (820)
Q Consensus 704 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 749 (820)
+++.||.+ ......|+-.++..|++.+|...|+.+.+....+..|
T Consensus 219 al~~D~~~-iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 219 ALALDPAN-IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHhcCCcc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 99999955 7779999999999999999999999998776655444
No 173
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.49 E-value=0.13 Score=55.89 Aligned_cols=42 Identities=17% Similarity=0.086 Sum_probs=24.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 003433 513 SALIDALCKNGLVESAVSLLDEMTKE-GIRPNVVTYNSIIDAF 554 (820)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~ 554 (820)
..|..--...|.++.|++.--.+.+. .+-|...+|..|.-+-
T Consensus 1025 milAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaa 1067 (1189)
T KOG2041|consen 1025 MILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAA 1067 (1189)
T ss_pred HHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHH
Confidence 33444456678888887765555443 3555666666554433
No 174
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.49 E-value=0.003 Score=55.07 Aligned_cols=14 Identities=14% Similarity=0.394 Sum_probs=5.0
Q ss_pred hcCCHHHHHHHHHH
Q 003433 451 KQGKYDEVRRMFEQ 464 (820)
Q Consensus 451 ~~g~~~~A~~~~~~ 464 (820)
+.|+.++|...+++
T Consensus 88 ~~~~~~~A~~~~~~ 101 (119)
T TIGR02795 88 ELGDKEKAKATLQQ 101 (119)
T ss_pred HhCChHHHHHHHHH
Confidence 33333333333333
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.45 E-value=0.012 Score=65.21 Aligned_cols=63 Identities=13% Similarity=0.108 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Q 003433 228 VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN 293 (820)
Q Consensus 228 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~ 293 (820)
..+|.++.-.+...|++++|...|++....+ |+...|..+...+...| +.++|.+.|++..+.
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G-~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKG-DNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc
Confidence 3444444444444455555555555555422 44445555555555555 555555555555443
No 176
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.44 E-value=0.002 Score=65.73 Aligned_cols=142 Identities=15% Similarity=0.104 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 406 SYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK-QGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVY 484 (820)
Q Consensus 406 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 484 (820)
+|..++...-+.+..+.|..+|.+..+.+ ..+..+|......-.+ .++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45666666666666777777777666433 2333444444444333 34455577777766654 345566666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 485 SKGGLYKEAMQIFREFKQAGLKAD---VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (820)
Q Consensus 485 ~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 552 (820)
.+.++.+.|..+|++.+.. +..+ ...|...+..-.+.|+.+.+.++.+++.+. .|+...+..+++
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 7777777777777776654 2211 247777777777778888777777777763 344333333443
No 177
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.44 E-value=0.27 Score=53.65 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=12.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 003433 481 IDVYSKGGLYKEAMQIFREFK 501 (820)
Q Consensus 481 i~~~~~~g~~~~A~~~~~~m~ 501 (820)
|..+.+.|+.-+|-+++.+|.
T Consensus 930 Ie~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 930 IEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred HHHhhhcccchhHHHHHHHHh
Confidence 445556666666666666664
No 178
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.44 E-value=0.055 Score=53.74 Aligned_cols=56 Identities=20% Similarity=0.136 Sum_probs=28.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003433 375 MIDGYAKAGRLDDALNMFSEMKFL--GIGLDRVSYNTVLSIYAKLGRFEEALLVCKEM 430 (820)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~m~~~--~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~ 430 (820)
+...|.+.|.+..|+.-++.+++. +.+........++.+|.+.|..++|..+...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 344455556666666555555544 11222334445555555555555555544433
No 179
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.44 E-value=0.0026 Score=56.85 Aligned_cols=94 Identities=13% Similarity=-0.054 Sum_probs=68.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003433 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 238 (820)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 238 (820)
.-.+...+.+.|++++|.++|+.....+ +.+...|..|+-++-..|++.+|+..|..+...++ .|...+-.+..++
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D---p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~ 113 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD---AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence 3345566777788888888887777764 33445667777777788888888888888777654 4677777777788
Q ss_pred HhcCChhHHHHHHHHHHh
Q 003433 239 GRSGYCQEAISVFNSMKR 256 (820)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~ 256 (820)
...|+.+.|.+.|+..+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888888888888877664
No 180
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.40 E-value=0.00016 Score=45.57 Aligned_cols=29 Identities=41% Similarity=0.778 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003433 511 LYSALIDALCKNGLVESAVSLLDEMTKEG 539 (820)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 539 (820)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666666666666666666666666554
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.38 E-value=0.0037 Score=58.53 Aligned_cols=96 Identities=19% Similarity=0.108 Sum_probs=69.5
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 235 (820)
...+..++..+...|++++|+..|+.++.....+.....++..++.++...|++++|+..++.+.... +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 34566677778888999999999999987643333334578888999999999999999999988763 33456677777
Q ss_pred HHHH-------hcCChhHHHHHHH
Q 003433 236 SAYG-------RSGYCQEAISVFN 252 (820)
Q Consensus 236 ~~~~-------~~g~~~~A~~~~~ 252 (820)
..|. +.|+++.|+..++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 7777 5566654444443
No 182
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.37 E-value=0.0047 Score=51.05 Aligned_cols=88 Identities=20% Similarity=0.362 Sum_probs=68.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchh
Q 003433 512 YSALIDALCKNGLVESAVSLLDEMTKEGI-RPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKD 590 (820)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 590 (820)
-...|..+...|++.....+|+.+++.|+ .|+..+|+.++.+.++...-..+++
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie------------------------- 82 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIE------------------------- 82 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHH-------------------------
Confidence 34456667777999999999999999999 8999999999988765432111111
Q ss_pred hhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 003433 591 VQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSR 657 (820)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~ 657 (820)
.++-+.+.+|+.|+..+++|+..||+.++..+.+
T Consensus 83 ---------------------------------~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 83 ---------------------------------NKLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred ---------------------------------HHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 0333578899999999999999999999988765
No 183
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.35 E-value=0.003 Score=64.45 Aligned_cols=129 Identities=12% Similarity=0.117 Sum_probs=65.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 265 TYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAV-CSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDA 343 (820)
Q Consensus 265 ~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 343 (820)
+|..+++...+.+ ..+.|..+|.+..+.+. .+..+|...... +...++.+.|.++|+...+. +..+...|...++.
T Consensus 3 v~i~~m~~~~r~~-g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTE-GIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-ChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4555555555555 45566666666553321 122223333333 22234455566666666554 34455666666666
Q ss_pred HHhcCCHHHHHHHHHHchhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 344 ICKGAQMDLAFEIMAEMPAKNISPNV----VTYSTMIDGYAKAGRLDDALNMFSEMKFL 398 (820)
Q Consensus 344 ~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 398 (820)
+.+.|+.+.|..+|++.... + +.. ..|...++.=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666544 2 222 35666666666666666666666655554
No 184
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.34 E-value=0.0048 Score=57.78 Aligned_cols=49 Identities=24% Similarity=0.370 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Q 003433 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL-WEAARNLFNEMVH 327 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~A~~~~~~~~~ 327 (820)
+-+-|++++++|...|+-||..|+..|+.++.+.+. ..+..++.-.|.+
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 446778888888888888888888888888876664 3344444444443
No 185
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.34 E-value=0.00023 Score=44.78 Aligned_cols=26 Identities=42% Similarity=0.942 Sum_probs=10.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 372 YSTMIDGYAKAGRLDDALNMFSEMKF 397 (820)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~ 397 (820)
|+++|++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34444444444444444444444433
No 186
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.34 E-value=0.00058 Score=52.08 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=42.3
Q ss_pred ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhh
Q 003433 690 RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (820)
Q Consensus 690 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (820)
..|++++|+..|+++++.+|. +...+..+++++.+.|++++|..+++++.+..
T Consensus 9 ~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 9 QQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 567888888888888888885 46778889999999999999998888876654
No 187
>PRK15331 chaperone protein SicA; Provisional
Probab=97.32 E-value=0.004 Score=55.88 Aligned_cols=94 Identities=11% Similarity=-0.016 Sum_probs=79.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhc
Q 003433 648 FSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHF 726 (820)
Q Consensus 648 ~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 726 (820)
.-....-+...|++++|..+|.-+...|+.+...+.++...+ ..+.+++|+..|.-+..+++++ +..+...+.+|...
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d-p~p~f~agqC~l~l 118 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND-YRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-CCccchHHHHHHHh
Confidence 345566667899999999999999988888877776666555 4789999999999999888854 66688899999999
Q ss_pred CchHHHHHHHHHhhhh
Q 003433 727 GQKRGAQLVVLEGKRR 742 (820)
Q Consensus 727 g~~~~A~~~~~~~~~~ 742 (820)
|+.+.|+..|..+.++
T Consensus 119 ~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 119 RKAAKARQCFELVNER 134 (165)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 9999999999887663
No 188
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.31 E-value=0.0036 Score=51.70 Aligned_cols=77 Identities=17% Similarity=0.388 Sum_probs=48.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003433 480 LIDVYSKGGLYKEAMQIFREFKQAGL-KADVVLYSALIDALCKNG--------LVESAVSLLDEMTKEGIRPNVVTYNSI 550 (820)
Q Consensus 480 li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~l 550 (820)
.|.-+...+++...-.+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|+..+++|+..||+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444444666666666666666666 566666666666554432 234566777888777788888888887
Q ss_pred HHHHhh
Q 003433 551 IDAFGR 556 (820)
Q Consensus 551 l~~~~~ 556 (820)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 776654
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.29 E-value=0.0007 Score=51.65 Aligned_cols=60 Identities=13% Similarity=0.079 Sum_probs=42.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCC
Q 003433 651 ILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSS 710 (820)
Q Consensus 651 ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~ 710 (820)
++..+...|++++|.+.|+.+++.+|.+..++..+...+ ..|++++|+..|+++++.+|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 455667777888888888887777777776666555444 577778888888888777774
No 190
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.29 E-value=0.0053 Score=57.47 Aligned_cols=51 Identities=27% Similarity=0.456 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003433 401 GLDRVSYNTVLSIYAKL-----GRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK 451 (820)
Q Consensus 401 ~~d~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 451 (820)
..|..+|..+++.|.+. |.++=....++.|.+-|+..|..+|+.|++.+=+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 34556666666666533 4555555566666666766777777777666544
No 191
>PRK11906 transcriptional regulator; Provisional
Probab=97.23 E-value=0.0064 Score=63.88 Aligned_cols=134 Identities=11% Similarity=0.108 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHh---------ccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccc
Q 003433 625 EILCILGVFQKMHK-LKIKPNVV-TFSAILNACS---------RCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDN 692 (820)
Q Consensus 625 ~~~~Al~~~~~m~~-~~~~Pd~~-~~~~ll~a~~---------~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 692 (820)
+.+.|+.+|.+.+. ..++|+.. .|..+...+. ......+|.++-+.+.+.|+.+..+...+.... -.+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 56679999999982 23788744 3544443332 133566788899999999999988765544322 234
Q ss_pred hHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhhh--hhhhccchhhhhc
Q 003433 693 IWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWE--NVWSESCLDLHLM 759 (820)
Q Consensus 693 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~d~~~~ 759 (820)
.++.|...|++++.++|+. +..|...++++...|+.++|.+.++++.+.+... .+.++.|+|.+.-
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~-A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~ 420 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDI-ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP 420 (458)
T ss_pred chhhHHHHHHHHhhcCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC
Confidence 5999999999999999955 6779999999999999999999999988776543 2445556665543
No 192
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.22 E-value=0.0063 Score=56.95 Aligned_cols=94 Identities=13% Similarity=0.066 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 440 VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP--NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALID 517 (820)
Q Consensus 440 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 517 (820)
..|..++..+...|++++|...|++.+.....+ ...++..+...|...|++++|+..+++..+... ....++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHH
Confidence 344444555555555666655555554432111 123455555556666666666666665554321 12334444444
Q ss_pred HHH-------HcCCHHHHHHHHHH
Q 003433 518 ALC-------KNGLVESAVSLLDE 534 (820)
Q Consensus 518 ~~~-------~~g~~~~A~~~~~~ 534 (820)
.+. ..|++++|+..+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 444 55565544444443
No 193
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.22 E-value=0.019 Score=63.55 Aligned_cols=63 Identities=16% Similarity=-0.024 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 473 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
+...|..+...+...|++++|...+++.++.+ |+...|..++..+...|+.++|.+.|+++..
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555555555566666666666666644 4556666666666666666666666666655
No 194
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0063 Score=60.03 Aligned_cols=100 Identities=19% Similarity=0.160 Sum_probs=48.6
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCCHH
Q 003433 153 LCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLG---KVDLAKNIFETALNEGYGNTVY 229 (820)
Q Consensus 153 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~ 229 (820)
+.+.+.|..|...|.+.|+++.|...|.++.+..+ ++...+..+..++.... ...++..+|+++++.++. |+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g---~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ir 228 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG---DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIR 228 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHH
Confidence 33444555555555555555555555555555532 22223333333333221 234455555555554322 455
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003433 230 AFSALISAYGRSGYCQEAISVFNSMKR 256 (820)
Q Consensus 230 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 256 (820)
+...|...+...|++.+|...|+.|.+
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 555555555555555555555555554
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.19 E-value=0.0011 Score=51.02 Aligned_cols=55 Identities=11% Similarity=0.068 Sum_probs=46.1
Q ss_pred ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhh
Q 003433 690 RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVW 745 (820)
Q Consensus 690 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 745 (820)
..|++++|+..|+++++.+|++ ..++..|+.+|.+.|++++|..++.........
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDN-PEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hccCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4688999999999999999965 666889999999999999999999887766543
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.14 Score=49.18 Aligned_cols=131 Identities=12% Similarity=0.103 Sum_probs=80.3
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----CCCCHHHHHHH
Q 003433 266 YNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRG-----IDQDIFTYNTL 340 (820)
Q Consensus 266 ~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g-----~~~~~~~~~~l 340 (820)
-+.++..+.-.+ ++.-.+.++.+.++...+.+......|+++-.+.||.+.|...|++..+.. +..+..+....
T Consensus 180 my~~~~~llG~k-Ey~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMK-EYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcch-hhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 345555555566 677777777777776656667777777777777777777777777665532 22222333333
Q ss_pred HHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 341 LDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFL 398 (820)
Q Consensus 341 l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 398 (820)
...|.-.+++..|...|+++...+.. |.+.-|.-.-+..-.|+..+|++.++.|+..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455556666677777666665433 4555555444445566677777777776665
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.071 Score=51.13 Aligned_cols=145 Identities=11% Similarity=0.072 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-----
Q 003433 406 SYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTL----- 480 (820)
Q Consensus 406 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l----- 480 (820)
+.+.++..+.-.|.+.-...++.++++..-+.++.....|+.+-.+.|+.+.|...|+...+..-.-|..+.+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 445566666667777777778888777665667777788888888888888888888866544333343333333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 481 IDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDA 553 (820)
Q Consensus 481 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 553 (820)
...|.-.+++..|...|++....+.. |+...|.-.-+..-.|+..+|++.++.|... .|...+-++++-.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~n 328 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLFN 328 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHHH
Confidence 34455667888888889888876543 6666666555666778899999999999874 5666555544433
No 198
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.02 E-value=0.2 Score=45.66 Aligned_cols=125 Identities=17% Similarity=0.130 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHH
Q 003433 402 LDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC---VSPNLLTYS 478 (820)
Q Consensus 402 ~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~ 478 (820)
|+...-..|..+..+.|+..+|...|++...--+.-|....-.+.++....+++.+|...++.+.+.. -.|| +..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 44444444555555555555555555555443334455555555555555555555555555554432 1122 222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003433 479 TLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVS 530 (820)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 530 (820)
.+...|...|++.+|...|+.....- |+...-......+.++|+.++|..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHH
Confidence 34445555555555555555555432 233222223334445554444433
No 199
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.01 E-value=0.0034 Score=48.49 Aligned_cols=64 Identities=22% Similarity=0.250 Sum_probs=41.6
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcC-ChHHHHHHHHHHHHc
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLG-KVDLAKNIFETALNE 222 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 222 (820)
++.|..+...+.+.|++++|+..|.++++.+ +.+..++..++.++.+.| ++++|++.++++++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD---PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4456666666677777777777777776663 444556666677777776 567777776666553
No 200
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.99 E-value=0.0029 Score=50.35 Aligned_cols=69 Identities=10% Similarity=0.140 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhccccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhh
Q 003433 646 VTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWH 725 (820)
Q Consensus 646 ~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 725 (820)
.+|+.++..|...|++++|+.+|++++.. -...+.. .+ .....++.++++|..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~-------------------------~~-~~a~~~~~lg~~~~~ 58 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDD-------------------------HP-DTANTLNNLGECYYR 58 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTH-------------------------HH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCC-------------------------CH-HHHHHHHHHHHHHHH
Confidence 45888999999999999999999888732 1111100 00 114568999999999
Q ss_pred cCchHHHHHHHHHhhh
Q 003433 726 FGQKRGAQLVVLEGKR 741 (820)
Q Consensus 726 ~g~~~~A~~~~~~~~~ 741 (820)
.|++++|.++++++.+
T Consensus 59 ~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 59 LGDYEEALEYYQKALD 74 (78)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 9999999999988754
No 201
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.98 E-value=0.0033 Score=48.36 Aligned_cols=52 Identities=21% Similarity=0.371 Sum_probs=26.1
Q ss_pred cCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003433 168 NRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE 222 (820)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 222 (820)
..|++++|++.|+.++... |.+..+...++.+|.+.|++++|..+++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN---PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT---TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455555555555555542 333334445555555555555555555555543
No 202
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.98 E-value=0.25 Score=48.00 Aligned_cols=84 Identities=12% Similarity=0.045 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 235 (820)
++.+-.-+..-.+.|+|++|.+.|+.+..+.+..+-...+...++-++.+.+++++|+...++..+.-+......|-.-|
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 34444444445567888888888888877765555555666677777777777777777777776653322223343344
Q ss_pred HHHH
Q 003433 236 SAYG 239 (820)
Q Consensus 236 ~~~~ 239 (820)
.+++
T Consensus 114 kgLs 117 (254)
T COG4105 114 KGLS 117 (254)
T ss_pred HHHH
Confidence 4433
No 203
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.95 E-value=0.00067 Score=43.54 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=29.8
Q ss_pred HHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHH
Q 003433 700 LFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQL 734 (820)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 734 (820)
+|+++++++|++ +..|+.|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n-~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNN-AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCC-HHHHHHHHHHHHHCcCHHhhcC
Confidence 378999999965 7779999999999999999963
No 204
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.95 E-value=0.62 Score=48.21 Aligned_cols=64 Identities=22% Similarity=0.350 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003433 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 238 (820)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 238 (820)
|..+...-.+.|+.+-|..+.+. . +. -..-+-.+.+.|+.+.| +.++.+.| .+| -+|..|+..-
T Consensus 3 ~a~IA~~A~~~GR~~LA~~LL~~----E---p~----~~~qVplLL~m~e~e~A---L~kAi~Sg-D~D-Li~~vLl~L~ 66 (319)
T PF04840_consen 3 YAEIARKAYEEGRPKLATKLLEL----E---PR----ASKQVPLLLKMGEDELA---LNKAIESG-DTD-LIYLVLLHLK 66 (319)
T ss_pred HHHHHHHHHHcChHHHHHHHHHc----C---CC----hHHHHHHHhcCCchHHH---HHHHHHcC-Ccc-HHHHHHHHHH
Confidence 55667777778888888877642 1 11 12345667777877777 45566554 223 2455555443
No 205
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.89 E-value=0.071 Score=51.55 Aligned_cols=64 Identities=19% Similarity=0.141 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003433 195 LASAMISILGRLGKVDLAKNIFETALNEGYG--NTVYAFSALISAYGRSGYCQEAISVFNSMKRYN 258 (820)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 258 (820)
.+-..+..+...|++++|.+.|+.+...-+. ....+...++.++-+.|++++|...|++..+.-
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3445566778899999999999999876322 235567788889999999999999999987643
No 206
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.85 E-value=0.066 Score=46.19 Aligned_cols=53 Identities=25% Similarity=0.369 Sum_probs=21.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 379 YAKAGRLDDALNMFSEMKFLGIGLD--RVSYNTVLSIYAKLGRFEEALLVCKEME 431 (820)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~~~~~d--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 431 (820)
+-..|+.++|+.+|++....|.... ...+..+.+.|...|++++|+.++++..
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444332221 1223333344444444444444444443
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.84 E-value=0.083 Score=56.90 Aligned_cols=56 Identities=11% Similarity=0.064 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003433 438 DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (820)
Q Consensus 438 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (820)
+..+...+...+-+...+.-|-++|.+|-.. ..+++.....+++.+|..+-+...+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 3344444455555566666777777766432 2456666677777777777666544
No 208
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.82 E-value=0.82 Score=47.79 Aligned_cols=349 Identities=14% Similarity=0.171 Sum_probs=169.6
Q ss_pred HHcCCCHHHHHHHHHHHHHcccccCC---hhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHh
Q 003433 166 LGNRGEWSKAIQCFAFAVKREERKND---QGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS--AYGR 240 (820)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~ 240 (820)
+.+++++.+|.++|.++.+.....+. .....+.++++|. .++++..........+... ... |..|.. .+-+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~-~s~--~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFG-KSA--YLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcC-Cch--HHHHHHHHHHHH
Confidence 55678999999999988775322211 1223456667665 3556666666666654421 222 333332 3457
Q ss_pred cCChhHHHHHHHHHHhC--CCCC------------CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC----CCCCHHHH
Q 003433 241 SGYCQEAISVFNSMKRY--NLKP------------NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNG----VQPDRITF 302 (820)
Q Consensus 241 ~g~~~~A~~~~~~m~~~--~~~p------------~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g----~~p~~~~~ 302 (820)
.+.+++|++.+..-.+. +..+ |...-+..+.++...| ++.++..+++++...= ...+..+|
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g-~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETG-RFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 78899998888776543 2111 1122245556666777 7777777777666432 33566677
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHH
Q 003433 303 NSLLAVCSRGGLWEAARNLFNEMVHRGIDQD-IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK 381 (820)
Q Consensus 303 ~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 381 (820)
+.++-.+.+ .+|-++.+.. .-| ..-|.-++-.|-+.= ..++...-..+.|-......++....-
T Consensus 171 d~~vlmlsr--------SYfLEl~e~~-s~dl~pdyYemilfY~kki------~~~d~~~Y~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 171 DRAVLMLSR--------SYFLELKESM-SSDLYPDYYEMILFYLKKI------HAFDQRPYEKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HHHHHHHhH--------HHHHHHHHhc-ccccChHHHHHHHHHHHHH------HHHhhchHHhhCcHHHHHHHHHHHHHh
Confidence 765555443 2333332221 111 112333444443321 111111111122333333333332221
Q ss_pred c--CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCC
Q 003433 382 A--GRLDDALNMFSEMKFLGIGLDR-VSYNTVLSIYAKLGRFEEALLVCKEMESSGI----RKDAVTYNALLGGYGKQGK 454 (820)
Q Consensus 382 ~--g~~~~A~~~~~~m~~~~~~~d~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~ 454 (820)
. .+..--+++++.-...-+.|+. -+...|+..+.+ +.+++..+.+.+....+ ..=..++..++....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1111122222222233334443 223344444433 44444444443322211 1123567777778888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCH-HHHH-HHHHHHHH
Q 003433 455 YDEVRRMFEQMKADCVSPNLLTYS-------TLIDVYSK----GGLYKEAMQIFREFKQAGLKADV-VLYS-ALIDALCK 521 (820)
Q Consensus 455 ~~~A~~~~~~m~~~~~~p~~~~~~-------~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~-~~~~-~li~~~~~ 521 (820)
..+|.+.+.-+... .|+...-. .+-++.+. .-+..+=+.+|+.....++.... +.|- --..-+.+
T Consensus 314 T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~ 391 (549)
T PF07079_consen 314 TEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWE 391 (549)
T ss_pred HHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHh
Confidence 88888888776654 44433211 22233331 12334445566666655443211 1111 11334567
Q ss_pred cCC-HHHHHHHHHHHHHC
Q 003433 522 NGL-VESAVSLLDEMTKE 538 (820)
Q Consensus 522 ~g~-~~~A~~~~~~m~~~ 538 (820)
.|. -++|+.+++..++.
T Consensus 392 ~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 392 IGQCDEKALNLLKLILQF 409 (549)
T ss_pred cCCccHHHHHHHHHHHHh
Confidence 776 78889999988874
No 209
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.82 E-value=1 Score=48.94 Aligned_cols=364 Identities=13% Similarity=0.118 Sum_probs=186.8
Q ss_pred cCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003433 152 KLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAF 231 (820)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 231 (820)
.....+.|+.++..-.+..+.+.+..++..++..- |.-...|...+..-.+.|..+.+.++|++.+.. ++.++..|
T Consensus 41 ~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky---Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW 116 (577)
T KOG1258|consen 41 DSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKY---PLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLW 116 (577)
T ss_pred chhcccchHHHHhccCchhHHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHH
Confidence 33456788888887777777777888888887653 433446777788888889999999999988764 66677778
Q ss_pred HHHHHHHH-hcCChhHHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 232 SALISAYG-RSGYCQEAISVFNSMKRY-NLK-PNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAV 308 (820)
Q Consensus 232 ~~li~~~~-~~g~~~~A~~~~~~m~~~-~~~-p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 308 (820)
......++ ..|+.+...+.|+..... |.. -....|...|.--...+ ++.....+|++.++. ...-|+..-.-
T Consensus 117 ~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qk-s~k~v~~iyeRilei----P~~~~~~~f~~ 191 (577)
T KOG1258|consen 117 LSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQK-SWKRVANIYERILEI----PLHQLNRHFDR 191 (577)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccc-cHHHHHHHHHHHHhh----hhhHhHHHHHH
Confidence 77666544 346777777777777642 221 13445666666555555 667777777776653 11112211111
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhC----CCCCCHHHHHHHHHHHH-HcC
Q 003433 309 CSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK----NISPNVVTYSTMIDGYA-KAG 383 (820)
Q Consensus 309 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~~~~-~~g 383 (820)
| .+..+.. ++. + ....+++.++-...... ........+..-++.-. ..+
T Consensus 192 f-------------~~~l~~~-~~~--~----------l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~ 245 (577)
T KOG1258|consen 192 F-------------KQLLNQN-EEK--I----------LLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSK 245 (577)
T ss_pred H-------------HHHHhcC-Chh--h----------hcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccc
Confidence 1 1111100 000 0 00011111111100000 00001111111111100 011
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHhcCCHH
Q 003433 384 RLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSG-------IRKDAVTYNALLGGYGKQGKYD 456 (820)
Q Consensus 384 ~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~ 456 (820)
..+++..++.+.... --.+|-......+.+..|+.-++.- ...+..+|+.-+.--.+.|+++
T Consensus 246 ~l~~~~~~l~~~~~~-----------~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~ 314 (577)
T KOG1258|consen 246 SLTEEKTILKRIVSI-----------HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFS 314 (577)
T ss_pred hhhHHHHHHHHHHHH-----------HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHH
Confidence 122222222211110 1112222223333333444333221 1234577888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 457 EVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (820)
Q Consensus 457 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (820)
.+.-+|++..--. .--...|-..+......|+.+-|..++....+.-.+-...+--.-....-..|++..|..+++...
T Consensus 315 ~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~ 393 (577)
T KOG1258|consen 315 RVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIE 393 (577)
T ss_pred HHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 8888888765321 112334444555555558888887777766554333222222222223345678999999999988
Q ss_pred HCCCCCCHH-HHHHHHHHHhhcCchhhhH
Q 003433 537 KEGIRPNVV-TYNSIIDAFGRSATTECTV 564 (820)
Q Consensus 537 ~~g~~p~~~-~~~~ll~~~~~~g~~~~a~ 564 (820)
.. . |+.+ .-..-+....+.|..+.+.
T Consensus 394 ~e-~-pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 394 SE-Y-PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred hh-C-CchhhhHHHHHhHHHHhcchhhhh
Confidence 76 3 5544 3333444556667766654
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.78 E-value=0.024 Score=56.81 Aligned_cols=96 Identities=16% Similarity=0.079 Sum_probs=62.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHH
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG--NTVYAFSALISAYG 239 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~ 239 (820)
.+..+.+.|++++|+..|+..++..+...-...++..++.+|...|++++|...|+.+++.-+. ....++..++..+.
T Consensus 149 A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~ 228 (263)
T PRK10803 149 AIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQ 228 (263)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHH
Confidence 3333355677888888888887764333222346667777788888888888888887764221 12445555666777
Q ss_pred hcCChhHHHHHHHHHHhC
Q 003433 240 RSGYCQEAISVFNSMKRY 257 (820)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~ 257 (820)
..|+.++|..+|+++.+.
T Consensus 229 ~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 229 DKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777788888877777763
No 211
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.76 E-value=0.81 Score=46.80 Aligned_cols=283 Identities=14% Similarity=0.066 Sum_probs=164.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHhcCCHHH
Q 003433 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVC--SRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLD----AICKGAQMDL 352 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~----~~~~~g~~~~ 352 (820)
+-..|.++-.+..+. +..|......|+.+- .-.|+++.|.+-|+.|.. |..+-..=+. .--+.|..+.
T Consensus 99 da~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 99 DASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred chHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHH
Confidence 555555555544322 233555554454433 346777888888877776 2333222222 2235677777
Q ss_pred HHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHH--H-HcCCHHHHHHH
Q 003433 353 AFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLG-IGLDRVS--YNTVLSIY--A-KLGRFEEALLV 426 (820)
Q Consensus 353 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~d~~~--~~~li~~~--~-~~g~~~~A~~~ 426 (820)
|.++-++.-..-.. -...+...+...|..|+++.|+++++.-+... +.++..- -..|+.+- . -.-+...|...
T Consensus 173 Ar~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 77777666554222 34567777788888888888888877655432 2233221 12222211 1 11234455555
Q ss_pred HHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCC
Q 003433 427 CKEMESSGIRKDAVT-YNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAM-QIFREFKQAG 504 (820)
Q Consensus 427 ~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~ 504 (820)
-.+..+. .||.+- -..-...+.+.|+..++-.+++.+-+.. |....+ ++..+.+.|+.-... +-.+.+....
T Consensus 252 A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia--~lY~~ar~gdta~dRlkRa~~L~slk 325 (531)
T COG3898 252 ALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIA--LLYVRARSGDTALDRLKRAKKLESLK 325 (531)
T ss_pred HHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHH--HHHHHhcCCCcHHHHHHHHHHHHhcC
Confidence 4444433 455332 2234567889999999999999988774 443333 233345556532221 1122222222
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hhcCchhhhHHhHHHHhhhhhhh
Q 003433 505 LKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAF-GRSATTECTVDDVERDLGKQKES 577 (820)
Q Consensus 505 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~l~~~~~~ 577 (820)
. .+..+...+..+-...|++..|..--+.... ..|....|..|.+.- +..|+-.++.+.+.++++..-++
T Consensus 326 ~-nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 326 P-NNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred c-cchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 1 2566777788888889998888876666665 478888888888865 45589888888888888765443
No 212
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.72 E-value=0.4 Score=43.71 Aligned_cols=128 Identities=17% Similarity=0.094 Sum_probs=69.8
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCC---CCCCHHHH
Q 003433 296 QPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN---ISPNVVTY 372 (820)
Q Consensus 296 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~ 372 (820)
.|++..-..|..++...|+..+|...|++....-+..|......+..+....++...|...++++-+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 345555555666666666666666666666654444555566666666666666666666666655432 1122 23
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003433 373 STMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVC 427 (820)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~ 427 (820)
-.+...|...|+..+|...|+..... -|+...-..-...+.+.|+.+++..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 34455566666666666666666554 344333333334445555555544333
No 213
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.32 Score=46.40 Aligned_cols=205 Identities=12% Similarity=0.065 Sum_probs=107.3
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (820)
..|.....+|....++++|...+.++.+--. .+...| -....++.|.-+..++.+. +--+..++--..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yE---nnrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs~ 99 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYE---NNRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKASE 99 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHH---hcccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHH
Confidence 3466677788888999999998888874311 111111 1223345555555555442 112445666677
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC---C--CCCCHHHHHHHHHHHHh
Q 003433 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN---G--VQPDRITFNSLLAVCSR 311 (820)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~---g--~~p~~~~~~~ll~~~~~ 311 (820)
+|..+|..+.|-..+++.-+. .++. +.++|+++|++.... + .+--...+..+.+++.+
T Consensus 100 lY~E~GspdtAAmaleKAak~----------------lenv-~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr 162 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKAAKA----------------LENV-KPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR 162 (308)
T ss_pred HHHHhCCcchHHHHHHHHHHH----------------hhcC-CHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence 889999988888777766431 1222 556666666655421 0 00012223444455666
Q ss_pred CCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchhC---CCCCCHHHHHHHHHHHHHcC
Q 003433 312 GGLWEAARNLFNEMVHR----GIDQD-IFTYNTLLDAICKGAQMDLAFEIMAEMPAK---NISPNVVTYSTMIDGYAKAG 383 (820)
Q Consensus 312 ~g~~~~A~~~~~~~~~~----g~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g 383 (820)
...+++|-..|.+-... .--++ -..|-+.|-.|.-..++..|...++..-+. .-.-|..+...|+.+| ..|
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~g 241 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEG 241 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccC
Confidence 66666665554432211 00111 122444444555556677777777663322 1122445555666554 345
Q ss_pred CHHHHHHH
Q 003433 384 RLDDALNM 391 (820)
Q Consensus 384 ~~~~A~~~ 391 (820)
+.+++.++
T Consensus 242 D~E~~~kv 249 (308)
T KOG1585|consen 242 DIEEIKKV 249 (308)
T ss_pred CHHHHHHH
Confidence 55554443
No 214
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.67 E-value=1.1 Score=47.03 Aligned_cols=48 Identities=8% Similarity=-0.051 Sum_probs=37.5
Q ss_pred ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHh
Q 003433 690 RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEG 739 (820)
Q Consensus 690 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 739 (820)
.+|.+.++.-...=+.+..| ++.+|..+|-++....+++||-.++.+.
T Consensus 474 sqgey~kc~~ys~WL~~iaP--S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLTKIAP--SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred hcccHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 46777777776666778888 3667999999999999999999887653
No 215
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=1.4 Score=48.99 Aligned_cols=109 Identities=12% Similarity=0.127 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 440 VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDAL 519 (820)
Q Consensus 440 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 519 (820)
.+.+--+.-+...|+..+|.++-.+.+ .||-..|-.-+.+++..+++++-.++-+... .+.-|.-.+.+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 344444555666777777777666543 4677777777777777777777665544432 345566677778
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhH
Q 003433 520 CKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDV 567 (820)
Q Consensus 520 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 567 (820)
.+.|+.+||.+.+-+.... . -...+|.+.|++.+|.+..
T Consensus 755 ~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHH
Confidence 8888888888877765431 1 4556777777777777654
No 216
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.55 E-value=0.04 Score=55.23 Aligned_cols=91 Identities=11% Similarity=0.029 Sum_probs=47.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhhcC
Q 003433 485 SKGGLYKEAMQIFREFKQAGLKAD--VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN----VVTYNSIIDAFGRSA 558 (820)
Q Consensus 485 ~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g 558 (820)
.+.|++++|...|+.+++..+... ...+..++..|...|++++|...|+++.+. .|+ ...+..+..++...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHHHHHHHHcC
Confidence 444556666666665555432211 234445555666666666666666666543 121 223444444555566
Q ss_pred chhhhHHhHHHHhhhhhhh
Q 003433 559 TTECTVDDVERDLGKQKES 577 (820)
Q Consensus 559 ~~~~a~~~~~~~l~~~~~~ 577 (820)
+.++|+..++++++.+|+.
T Consensus 232 ~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 232 DTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred CHHHHHHHHHHHHHHCcCC
Confidence 6666666666666555543
No 217
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.47 E-value=1.4 Score=45.72 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003433 406 SYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYS 485 (820)
Q Consensus 406 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 485 (820)
+.+..|.-+...|+...|.++-.+.. .||..-|...+.+|+..+++++-.++... .-.+.-|-..+..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34444555666777777776655553 46777777777777777777776665432 123466677777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003433 486 KGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDE 534 (820)
Q Consensus 486 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 534 (820)
+.|+..+|..+...+ .+..-+..|.+.|++.+|.+.--+
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777766652 113456667777777777665443
No 218
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.46 E-value=1.3 Score=45.44 Aligned_cols=119 Identities=12% Similarity=0.035 Sum_probs=63.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHhcCC
Q 003433 412 SIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKAD-CVS-PNLLTYSTLIDVYSKGGL 489 (820)
Q Consensus 412 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~-p~~~~~~~li~~~~~~g~ 489 (820)
.++.+.|+..++-.+++.+-+.. |.+..+ .+..+.+.|+.. ..-+++.... .++ .|..+...+..+-...|+
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~e--PHP~ia--~lY~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e 344 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAE--PHPDIA--LLYVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGE 344 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcC--CChHHH--HHHHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccc
Confidence 55666777777777777666543 333333 222334444422 2222211110 012 244555556666666777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHC
Q 003433 490 YKEAMQIFREFKQAGLKADVVLYSALIDALCK-NGLVESAVSLLDEMTKE 538 (820)
Q Consensus 490 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~ 538 (820)
+..|..--+..... .|....|..|.+.-.- .|+-.++...+.+.++.
T Consensus 345 ~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 345 FSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 77666665555543 3566666666655443 37777777777777664
No 219
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.39 E-value=1.1 Score=43.82 Aligned_cols=200 Identities=17% Similarity=0.131 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-H
Q 003433 371 TYSTMIDGYAKAGRLDDALNMFSEMKFL-GIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLG-G 448 (820)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~-~ 448 (820)
.+......+...+.+..+...+...... ........+..+...+...+.+..+...+.......... ......... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 3333444444444444444444443321 112223333334444444444444444444444322111 111111111 4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003433 449 YGKQGKYDEVRRMFEQMKADCV--SPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVE 526 (820)
Q Consensus 449 ~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 526 (820)
+...|++++|...|.+...... ......+......+...++.+.|...+..............+..+...+...++++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 4455555555555555433110 01222223333334445555555555555554321112444555555555555556
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCchhhhHHhHHHHhhh
Q 003433 527 SAVSLLDEMTKEGIRPN-VVTYNSIIDAFGRSATTECTVDDVERDLGK 573 (820)
Q Consensus 527 ~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~ 573 (820)
.|...+...... .|+ ...+..+...+...+..+++...+.+++..
T Consensus 220 ~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 220 EALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666665555543 222 223333333333444455555544444443
No 220
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.31 E-value=1.1 Score=46.73 Aligned_cols=129 Identities=16% Similarity=0.229 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHH-HHHHH
Q 003433 300 ITFNSLLAVCSRGGLWEAARNLFNEMVHRG-IDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTY-STMID 377 (820)
Q Consensus 300 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~ 377 (820)
.+|..+++.-.+..-++.|+.+|-++.+.| +.+++.++++++..++. |+...|..+|+--... -||...| +-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 334444444444444555555555555554 34445555555554432 4444555555432222 1232222 23334
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 378 GYAKAGRLDDALNMFSEMKFLGIGLD--RVSYNTVLSIYAKLGRFEEALLVCKEMES 432 (820)
Q Consensus 378 ~~~~~g~~~~A~~~~~~m~~~~~~~d--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 432 (820)
.+...++-+.|..+|+..+..- ..+ ...|..+|+.-..-|++..+..+-+++.+
T Consensus 475 fLi~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 4445555555555555333220 111 23455555555555655555555555543
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.30 E-value=0.014 Score=46.34 Aligned_cols=65 Identities=23% Similarity=0.348 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHccc----ccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREE----RKNDQGKLASAMISILGRLGKVDLAKNIFETALN 221 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 221 (820)
..+..+...|...|++++|++.|++++.... ..+....++..++.++...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3466677788888888888888888775411 1122345667777777777777777777777654
No 222
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.22 E-value=0.39 Score=52.03 Aligned_cols=100 Identities=16% Similarity=0.277 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLG 447 (820)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 447 (820)
+..+...+...+.+...+.-|-++|.+|-.. ..+++.....+++++|..+-++..+. .+| +|.-..+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy~pyaq 812 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDD--VYMPYAQ 812 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--ccc--ccchHHH
Confidence 3344444444455556666666777665422 34566666777777777666554431 222 3333444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003433 448 GYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (820)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (820)
.++...++++|.+. |.+.|+-.+|.++++++..
T Consensus 813 wLAE~DrFeEAqkA----------------------fhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKA----------------------FHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HhhhhhhHHHHHHH----------------------HHHhcchHHHHHHHHHhhh
Confidence 45555555555443 3345666677777666643
No 223
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.18 E-value=0.032 Score=43.46 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=35.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 482 DVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (820)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (820)
..|.+.+++++|.++++.++..++. +...|.....++.+.|++++|.+.|++.++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4556666666666666666665543 5556666666666666666666666666653
No 224
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.14 E-value=0.35 Score=48.75 Aligned_cols=95 Identities=8% Similarity=0.034 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhc----CCchhHHHH------HHHhccc-cchHHHHHHHHHHHhhcC--CCc-
Q 003433 646 VTFSAILNACSRCNSFEDASMLLEELRLF----DNQVYGVAH------GLLMGYR-DNIWVQALSLFDEVKLMD--SST- 711 (820)
Q Consensus 646 ~~~~~ll~a~~~~g~~~eA~~~~~~~~~~----~~~~~~~~~------~~~~~~~-~~~~~~A~~~~~~~~~~~--~~~- 711 (820)
.++.+|...|.+..++++|.-+..++.++ ...++..-+ .+..+++ .|.+.+|.+.-+++.++. ..+
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 45666666677777777766555554422 112222211 1122232 566666666666654421 111
Q ss_pred --chhHHHHHHHHHhhcCchHHHHHHHHHhh
Q 003433 712 --ASAFYNALTDMLWHFGQKRGAQLVVLEGK 740 (820)
Q Consensus 712 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 740 (820)
-....-+++|||...|+.+.|..-++.+.
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 12234568888888888888877776554
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.09 E-value=0.016 Score=60.93 Aligned_cols=99 Identities=7% Similarity=-0.119 Sum_probs=70.7
Q ss_pred CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHH---HHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhH
Q 003433 641 IKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGV---AHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAF 715 (820)
Q Consensus 641 ~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~ 715 (820)
.+|+ ...++.++.+|.+.|++++|...|+++++++|++... ++++...| ..|+.++|+..+++++++.+ . .
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn---~-~ 145 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYN---L-K 145 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc---h-h
Confidence 4564 6679999999999999999999999999999987643 66666666 58999999999999999732 1 1
Q ss_pred HHHHHH--HHhhcCchHHHHHHHHHhhhhh
Q 003433 716 YNALTD--MLWHFGQKRGAQLVVLEGKRRQ 743 (820)
Q Consensus 716 ~~~l~~--~~~~~g~~~~A~~~~~~~~~~~ 743 (820)
|..+.. -+....+..+..+++.++..-|
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G 175 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGG 175 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhC
Confidence 332211 1223344456666666555444
No 226
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.03 E-value=3.7 Score=46.51 Aligned_cols=128 Identities=15% Similarity=0.157 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003433 406 SYNTVLSIYAKLG-----RFEEALLVCKEMESSGIRKDAVTYNALLGGYGK-QGKYDEVRRMFEQMKADCVSPNLLTYST 479 (820)
Q Consensus 406 ~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 479 (820)
...-+..+|.+.. +.+.|+.++.+..+.| .|+....-..+..... ..+...|.++|......| ....+-.
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~ 365 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYR 365 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHH
Confidence 3444555554432 4566777777766666 3444333322222222 245667777777777766 3333333
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003433 480 LIDVYSK----GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEG 539 (820)
Q Consensus 480 li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 539 (820)
+..+|.. ..+...|..++++..+.|. +....-...+..+.. +.++.+.-.+..+.+.|
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 3333332 2366777777777777662 221111112222223 56666666555555543
No 227
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.96 E-value=0.047 Score=42.52 Aligned_cols=53 Identities=21% Similarity=0.210 Sum_probs=23.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003433 414 YAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKA 467 (820)
Q Consensus 414 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 467 (820)
|.+.+++++|+++++.++..+ +.+...|.....++.+.|++++|.+.|++..+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444444444444433 23344444444444444444444444444443
No 228
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.14 Score=52.76 Aligned_cols=94 Identities=7% Similarity=-0.042 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHh
Q 003433 646 VTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLW 724 (820)
Q Consensus 646 ~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 724 (820)
.+++.|.-.|.+.+.+.+|++.-+++++.++.+.-.++.-..++ ..+.++.|+..|+++++++|.| .++-+-|+.+-.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N-ka~~~el~~l~~ 336 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN-KAARAELIKLKQ 336 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHH
Confidence 34667777888999999999999999999998888776655555 4788999999999999999966 666777777766
Q ss_pred hcCchHHH-HHHHHHhh
Q 003433 725 HFGQKRGA-QLVVLEGK 740 (820)
Q Consensus 725 ~~g~~~~A-~~~~~~~~ 740 (820)
+..++.+. .++|..|.
T Consensus 337 k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 65555433 55666554
No 229
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.83 E-value=3.7 Score=44.90 Aligned_cols=377 Identities=11% Similarity=0.072 Sum_probs=209.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHH-HHhcCChHHHHHHHHHHHHc-CCC-CCHHHHHHH
Q 003433 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISI-LGRLGKVDLAKNIFETALNE-GYG-NTVYAFSAL 234 (820)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~-~~~-~~~~~~~~l 234 (820)
-|......=.+-|..+.+.++|++.+.-- +....+|...... ....|+.+..+..|+.+... |.. .+...|...
T Consensus 81 yW~kfA~~E~klg~~~~s~~Vfergv~ai---p~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdky 157 (577)
T KOG1258|consen 81 YWKKFADYEYKLGNAENSVKVFERGVQAI---PLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKY 157 (577)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHH
Confidence 34445555567789999999999998753 3333344444333 33567888889999998764 211 245678899
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HcCC-----CCHHHHHHHHHHHHHC---C-CCCCHHHH
Q 003433 235 ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDAC---GKGG-----VDFKHVVEIFDDMLRN---G-VQPDRITF 302 (820)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~g-----~~~~~A~~~~~~m~~~---g-~~p~~~~~ 302 (820)
|..-..++++.....+|++.++. ....|+....-| .+.. ...+++.++-...... + .......+
T Consensus 158 ie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~ 233 (577)
T KOG1258|consen 158 IEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEEL 233 (577)
T ss_pred HHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHH
Confidence 98888999999999999999973 223333333322 2221 0233333332222211 0 00111112
Q ss_pred HHHHHHHHh-CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhC-------CCCCCHHHHHH
Q 003433 303 NSLLAVCSR-GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK-------NISPNVVTYST 374 (820)
Q Consensus 303 ~~ll~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~ 374 (820)
..-+.--.. .+..+++.....+... ..-.++-......+.+..|+.-++. -..++..+|+.
T Consensus 234 ~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~ 302 (577)
T KOG1258|consen 234 EIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRY 302 (577)
T ss_pred HHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHH
Confidence 111111111 1122222222222211 1112222233333444444443332 11234678888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003433 375 MIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGK 454 (820)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 454 (820)
-++.-...|+.+.+.-+|+...--- ..=...|-..+.-....|+.+-|..++....+--.+..+.+.-.-....-..|+
T Consensus 303 yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n 381 (577)
T KOG1258|consen 303 YLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGN 381 (577)
T ss_pred HhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhcc
Confidence 8888899999999999998875321 111223333444444558888888887766554433333332222222345689
Q ss_pred HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHHCCCCCCHHHHHHHHHH-----HHHcCCH
Q 003433 455 YDEVRRMFEQMKADCVSPNLL-TYSTLIDVYSKGGLYKEAM---QIFREFKQAGLKADVVLYSALIDA-----LCKNGLV 525 (820)
Q Consensus 455 ~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~---~~~~~m~~~~~~p~~~~~~~li~~-----~~~~g~~ 525 (820)
++.|..+++.+.+.- |+.. .-..-+....+.|+.+.+. +++..... |-. +......+.-- +.-.++.
T Consensus 382 ~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~~-~~~i~~~l~~~~~r~~~~i~~d~ 457 (577)
T KOG1258|consen 382 FDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GKE-NNGILEKLYVKFARLRYKIREDA 457 (577)
T ss_pred HHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-ccc-CcchhHHHHHHHHHHHHHHhcCH
Confidence 999999999998873 5543 3333456667788888887 33333322 111 22222222221 2345788
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC
Q 003433 526 ESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSA 558 (820)
Q Consensus 526 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 558 (820)
+.|..++.+|.+. ..++...|..++.-+...+
T Consensus 458 ~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 458 DLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 9999999999985 4556667888887665554
No 230
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.73 E-value=1.7 Score=45.42 Aligned_cols=172 Identities=15% Similarity=0.087 Sum_probs=83.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHchhCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 339 TLLDAICKGAQMDLAFEIMAEMPAKN---ISPNVVTYSTMIDGYAK---AGRLDDALNMFSEMKFLGIGLDRVSYNTVLS 412 (820)
Q Consensus 339 ~ll~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~ 412 (820)
.|+-.|....+++..+++++.+...- +.-....-....-++-+ .|+.++|++++..+......++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34444666666777777766665531 00011111122333444 5666666666666444444556666665555
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--
Q 003433 413 IYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLY-- 490 (820)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-- 490 (820)
.|-.. | .+.+ ..|.. ..++|+..|.+.-+. .+|..+--.++..+...|..
T Consensus 226 IyKD~---------~---~~s~-~~d~~-------------~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~ 277 (374)
T PF13281_consen 226 IYKDL---------F---LESN-FTDRE-------------SLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFE 277 (374)
T ss_pred HHHHH---------H---HHcC-ccchH-------------HHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCccc
Confidence 44211 0 1111 01111 155666666655543 24433322222222222321
Q ss_pred --HHHHHHH---H-HHHHCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 491 --KEAMQIF---R-EFKQAG---LKADVVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (820)
Q Consensus 491 --~~A~~~~---~-~m~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (820)
.+..++- . .+.+.| -..|.-.+.+++.++.-.|+.++|.+.+++|.+.
T Consensus 278 ~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 278 TSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred chHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1222222 1 111222 1235556677788888888888888888888875
No 231
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.72 E-value=0.14 Score=49.78 Aligned_cols=104 Identities=18% Similarity=0.269 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhh
Q 003433 507 ADVVLYSALIDALCK-----NGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLD 581 (820)
Q Consensus 507 p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~ 581 (820)
.|-.+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|++.+-+..-...-+ +.+..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nv--fQ~~F---------- 132 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNV--FQKVF---------- 132 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHH--HHHHH----------
Confidence 466666666666543 3557777778899999999999999999999886644322111 11100
Q ss_pred hhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 003433 582 AMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNS 660 (820)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~ 660 (820)
--|- +..+++++++++|...|+.||..+-..|++++.+.|-
T Consensus 133 ---------------------~HYP-----------------~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 ---------------------LHYP-----------------QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ---------------------hhCc-----------------hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 0010 1344699999999999999999999999999998774
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.72 E-value=0.11 Score=54.91 Aligned_cols=70 Identities=17% Similarity=0.098 Sum_probs=55.8
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003433 153 LCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE 222 (820)
Q Consensus 153 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 222 (820)
+..++.+..+...|.+.|++++|+..|++++..++.......+|..++.+|.+.|++++|+..++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456778888889999999999999999999886332211145888999999999999999999998874
No 233
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.70 E-value=0.067 Score=48.62 Aligned_cols=71 Identities=23% Similarity=0.338 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 003433 476 TYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK-----EGIRPNVVTY 547 (820)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 547 (820)
+...++..+...|++++|.++.+.+....+- |...|..+|.+|...|+..+|+++|+++.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3445666777788888888888888776643 777888888888888888888888887753 3777776643
No 234
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.68 E-value=0.65 Score=49.38 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHH
Q 003433 474 LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLK-ADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV--TYNSI 550 (820)
Q Consensus 474 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~l 550 (820)
..+-..|..+..+.|+.++|++.|++|.+.... -+......|+.++...+.+.++..++.+--+.. -|... .|+..
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YTaA 337 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYTAA 337 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHHHH
Confidence 334455667777888888888888888764322 134466778888888888888888888865432 23333 55554
Q ss_pred HHHHhhcCch---------------hhhHHhHHHHhhhhhhh
Q 003433 551 IDAFGRSATT---------------ECTVDDVERDLGKQKES 577 (820)
Q Consensus 551 l~~~~~~g~~---------------~~a~~~~~~~l~~~~~~ 577 (820)
+-.+...|+. ..|++.+.++++.+|..
T Consensus 338 LLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 338 LLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred HHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 4333222221 23456666777776654
No 235
>PRK11906 transcriptional regulator; Provisional
Probab=95.68 E-value=0.38 Score=50.98 Aligned_cols=112 Identities=7% Similarity=0.016 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHH
Q 003433 624 QEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLF 701 (820)
Q Consensus 624 ~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~ 701 (820)
.+..+|+++-++.++ +.| |......++.+....|+++.|...|+.+...+|+...+.....+.. -.|+.++|.+.+
T Consensus 318 ~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 318 LAAQKALELLDYVSD--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 366789999999888 444 7788888888888889999999999999999998877655443322 478899999999
Q ss_pred HHHhhcCCCcch-hHHHHHHHHHhhcCchHHHHHHHHH
Q 003433 702 DEVKLMDSSTAS-AFYNALTDMLWHFGQKRGAQLVVLE 738 (820)
Q Consensus 702 ~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 738 (820)
+++++++|.-.. .+.-..+++|+.. ..++|++++-+
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 999999995432 2233344466655 56777777643
No 236
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.65 E-value=0.32 Score=41.46 Aligned_cols=93 Identities=18% Similarity=0.122 Sum_probs=74.2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHH
Q 003433 163 LRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTV---YAFSALISAYG 239 (820)
Q Consensus 163 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~ 239 (820)
.-+++..|+++.|++.|.+++.. .|....+|+.-..++.-+|+.++|+.=++++++..-..+. .+|..-...|.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l---~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL---APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh---cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 34577889999999999999987 3566679999999999999999999999999875333232 23444556788
Q ss_pred hcCChhHHHHHHHHHHhCC
Q 003433 240 RSGYCQEAISVFNSMKRYN 258 (820)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~~ 258 (820)
..|+.+.|..-|+...+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 8999999999999887765
No 237
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.65 E-value=2.4 Score=47.98 Aligned_cols=182 Identities=13% Similarity=0.138 Sum_probs=98.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003433 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (820)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 237 (820)
....-+..+.+...+.-|+.+-.. ++........+...-++.+.+.|++++|...|-+.+.. .+| ..+|.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 445566667777777777766432 21111122234445566667778888887777665542 121 234555
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 003433 238 YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEA 317 (820)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 317 (820)
|....+..+-..+++.+.+.|+. +...-..|+.+|.+.+ +.++-.++.+.-. .|.. ..-....+..+.+.+-.++
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlk-d~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLK-DVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhc-chHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 66666677777777777777765 5555566777777777 6665555444332 2211 0112334555555666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHch
Q 003433 318 ARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMP 361 (820)
Q Consensus 318 A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 361 (820)
|..+-.+... ...+...+ +-..+++++|++.+..+.
T Consensus 482 a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 6555433322 22332222 233455666666665543
No 238
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.64 E-value=0.19 Score=44.23 Aligned_cols=85 Identities=8% Similarity=0.047 Sum_probs=61.0
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003433 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (820)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 234 (820)
++..+..-.....+.|+|++|++.|+.+..+-+..+-...+...++.+|.+.|++++|...+++.++..+...-.-|-..
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 34455556666778899999999999988876555544556778899999999999999999999887543323334444
Q ss_pred HHHHH
Q 003433 235 ISAYG 239 (820)
Q Consensus 235 i~~~~ 239 (820)
+.+++
T Consensus 89 ~~gL~ 93 (142)
T PF13512_consen 89 MRGLS 93 (142)
T ss_pred HHHHH
Confidence 44443
No 239
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.64 E-value=2.4 Score=41.38 Aligned_cols=80 Identities=16% Similarity=0.065 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003433 194 KLASAMISILGRLGKVDLAKNIFETALNEGY--GNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVID 271 (820)
Q Consensus 194 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 271 (820)
.+|+.. ..-.+.|++++|.+.|+.+..+-+ +-...+...++-++.+.+++++|+..+++....-+......|..-|.
T Consensus 36 ~LY~~g-~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 36 ELYNEG-LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 344443 335678999999999999986532 12345566677788889999999999998887544334445555555
Q ss_pred HHH
Q 003433 272 ACG 274 (820)
Q Consensus 272 ~~~ 274 (820)
+++
T Consensus 115 gLs 117 (254)
T COG4105 115 GLS 117 (254)
T ss_pred HHH
Confidence 544
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=1.2 Score=44.13 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=68.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 241 (820)
-...+...|++.+|...|..++... +.+..+...++.+|...|+++.|..++..+..............-|..+.+.
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~---~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAA---PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA 216 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhC---cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 4555677778888888887777764 3333455677777888888888888777765432111111222233444444
Q ss_pred CChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003433 242 GYCQEAISVFNSMKRYNLKP-NLVTYNAVIDACGKGGVDFKHVVEIFDDMLR 292 (820)
Q Consensus 242 g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~ 292 (820)
....+..++-.+.-. .| |...-..+...+...| +.+.|.+.+-.+++
T Consensus 217 a~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g-~~e~Ale~Ll~~l~ 264 (304)
T COG3118 217 AATPEIQDLQRRLAA---DPDDVEAALALADQLHLVG-RNEAALEHLLALLR 264 (304)
T ss_pred hcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 444444444444433 13 4444444555555555 56666555555443
No 241
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=1.2 Score=42.65 Aligned_cols=87 Identities=15% Similarity=0.246 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003433 441 TYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALC 520 (820)
Q Consensus 441 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 520 (820)
.|.--..+|....++++|...+.+..+. .+.|...| -....++.|.-+.++|.+. .--+..|+--...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444455666777777777766665431 11121111 1123345555555555542 112344555666778
Q ss_pred HcCCHHHHHHHHHHHHH
Q 003433 521 KNGLVESAVSLLDEMTK 537 (820)
Q Consensus 521 ~~g~~~~A~~~~~~m~~ 537 (820)
.+|..+-|-..+++.-+
T Consensus 103 E~GspdtAAmaleKAak 119 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAK 119 (308)
T ss_pred HhCCcchHHHHHHHHHH
Confidence 88887777777776543
No 242
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.53 E-value=2.7 Score=44.01 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003433 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (820)
Q Consensus 473 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (820)
|...+.+++.++.-.|+.++|.+..++|..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 333444445555555555555555555544
No 243
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.44 E-value=1.1 Score=41.96 Aligned_cols=98 Identities=12% Similarity=0.129 Sum_probs=71.2
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHhhcCCc-hhHHHHHHHhccccchHHHHHHHHHHHhhcCCC
Q 003433 633 FQKMHKLKIKPNV-VTFSAILNACSRCNSFEDASMLLEELRLFDNQ-VYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSS 710 (820)
Q Consensus 633 ~~~m~~~~~~Pd~-~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 710 (820)
|.+.+. +.|+. .+||.|+--+...|+++.|.+.|+...+.||. +|..++.-+.-|..|++.-|.+-+-+--+.||+
T Consensus 88 ftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~ 165 (297)
T COG4785 88 FSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPN 165 (297)
T ss_pred hhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCC
Confidence 444444 78874 45888888888999999999999999999996 454555444455788999999999998899996
Q ss_pred cchhHHHHHHHHHhhcC--chHHHHHHH
Q 003433 711 TASAFYNALTDMLWHFG--QKRGAQLVV 736 (820)
Q Consensus 711 ~~~~~~~~l~~~~~~~g--~~~~A~~~~ 736 (820)
+. |.+ .|+|...- +..+|..-+
T Consensus 166 DP---fR~-LWLYl~E~k~dP~~A~tnL 189 (297)
T COG4785 166 DP---FRS-LWLYLNEQKLDPKQAKTNL 189 (297)
T ss_pred Ch---HHH-HHHHHHHhhCCHHHHHHHH
Confidence 53 443 35665433 455666554
No 244
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.41 E-value=0.96 Score=40.93 Aligned_cols=70 Identities=19% Similarity=0.296 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 003433 230 AFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLR-----NGVQPDRIT 301 (820)
Q Consensus 230 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~-----~g~~p~~~~ 301 (820)
+...++..+...|++++|+.+.+.+....+- |...|..+|.++...| +...|.+.|+++.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g-~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQG-RRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444555555666666666666666553322 4555666666666666 56666666655532 355555443
No 245
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.38 E-value=0.098 Score=47.64 Aligned_cols=80 Identities=13% Similarity=0.025 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHhcc------c-----cchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCc-
Q 003433 661 FEDASMLLEELRLFDNQVYGVAHGLLMGY------R-----DNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQ- 728 (820)
Q Consensus 661 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~------~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 728 (820)
++.|++.++.....||.+...++++...+ + ...+++|+.-|++++.++|+. ...+.++|+.|...|.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~-hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK-HDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHHhh
Confidence 45666666666667777776666553322 1 235778899999999999965 5568889999877653
Q ss_pred ---hHHHHHHHHHhhh
Q 003433 729 ---KRGAQLVVLEGKR 741 (820)
Q Consensus 729 ---~~~A~~~~~~~~~ 741 (820)
..+|..+|+++.+
T Consensus 86 ~~d~~~A~~~F~kA~~ 101 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATE 101 (186)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHH
Confidence 4456666655543
No 246
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.33 E-value=0.91 Score=50.07 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHH
Q 003433 279 DFKHVVEIFDDMLRNGVQPDRITFN-SLLAVCSRGGLWEAARNLFNEMVHRG---IDQDIFTYNTLLDAICKGAQMDLAF 354 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~A~~~~~~~~~~g---~~~~~~~~~~ll~~~~~~g~~~~A~ 354 (820)
+.+.|.++++.+.+. -|+...|. .-.+.+...|++++|++.|++..... -+.....+--++..+.-.+++++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 567777777777665 33443332 33455666777777777777554311 0122344445666677777777777
Q ss_pred HHHHHchhCCCCCCHHHHHHHH-HHHHHcCCH-------HHHHHHHHHHHH
Q 003433 355 EIMAEMPAKNISPNVVTYSTMI-DGYAKAGRL-------DDALNMFSEMKF 397 (820)
Q Consensus 355 ~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~~-------~~A~~~~~~m~~ 397 (820)
+.|..+.+..-- +...|.-+. .++...|+. ++|.++|.+...
T Consensus 326 ~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 326 EYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 777777765322 233444333 234455666 777777776543
No 247
>PRK15331 chaperone protein SicA; Provisional
Probab=95.31 E-value=0.16 Score=45.86 Aligned_cols=86 Identities=15% Similarity=0.029 Sum_probs=41.4
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003433 380 AKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVR 459 (820)
Q Consensus 380 ~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 459 (820)
...|++++|..+|.-+...+ .-+..-+..|...|-..+++++|+..|......+ ..|+..+.....+|...|+.+.|+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 34555555555555544433 2233334444445555555555555554443332 233333444455555555555555
Q ss_pred HHHHHHHH
Q 003433 460 RMFEQMKA 467 (820)
Q Consensus 460 ~~~~~m~~ 467 (820)
..|...++
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 55555544
No 248
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.26 Score=50.86 Aligned_cols=96 Identities=15% Similarity=0.115 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 370 VTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGY 449 (820)
Q Consensus 370 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 449 (820)
.+++.+.-+|.+.+++.+|++.-.+.+..+ +.|....-.-..+|...|+++.|+..|+++++.. +.|..+-+.|+.+-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 345556666666666666666666666655 4555555555666666666666666666666543 33444444444443
Q ss_pred HhcCCHHH-HHHHHHHHHH
Q 003433 450 GKQGKYDE-VRRMFEQMKA 467 (820)
Q Consensus 450 ~~~g~~~~-A~~~~~~m~~ 467 (820)
-+..+..+ ..++|..|..
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 33333332 2445555543
No 249
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.17 E-value=4.3 Score=41.36 Aligned_cols=169 Identities=9% Similarity=0.049 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH----HHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---CHH
Q 003433 405 VSYNTVLSIYAKLGRFEEALLVCKE----MESSG-IRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKAD-CVSP---NLL 475 (820)
Q Consensus 405 ~~~~~li~~~~~~g~~~~A~~~~~~----~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p---~~~ 475 (820)
.+|..+..+.++.|.+++++..--. ..+.. -..-...|..+..++.+.-++.+++.+-..-... |..+ -..
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 3455556666666666655433211 11100 0001233444555555555555555554433321 1222 112
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHH
Q 003433 476 TYSTLIDVYSKGGLYKEAMQIFREFKQAG-----LKADVVLYSALIDALCKNGLVESAVSLLDEMTKE----GIRPNVVT 546 (820)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~ 546 (820)
...++..++.-.+.++++++.|+...+.- .-....++-.|.+.|.+..++++|.-+..++.+. ++..-..-
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 23345566666677788888777765421 1122456777888888888888887776665432 33222222
Q ss_pred HH-----HHHHHHhhcCchhhhHHhHHHHhhh
Q 003433 547 YN-----SIIDAFGRSATTECTVDDVERDLGK 573 (820)
Q Consensus 547 ~~-----~ll~~~~~~g~~~~a~~~~~~~l~~ 573 (820)
|. .+.-++...|.+..|.+..+++.+.
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 32 2233455566666665555554443
No 250
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.16 E-value=0.25 Score=48.48 Aligned_cols=91 Identities=20% Similarity=0.176 Sum_probs=52.2
Q ss_pred HHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCC
Q 003433 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG--NTVYAFSALISAYGRSGY 243 (820)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~ 243 (820)
+...|++..|.+.|...++..+...-...++.-|+..+...|++++|..+|..+.+.-+. .-...+..|.....+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 444555666666666666654433333345555666666666666666666666553211 113455566666666666
Q ss_pred hhHHHHHHHHHHh
Q 003433 244 CQEAISVFNSMKR 256 (820)
Q Consensus 244 ~~~A~~~~~~m~~ 256 (820)
.++|..+|+++.+
T Consensus 231 ~d~A~atl~qv~k 243 (262)
T COG1729 231 TDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666655
No 251
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.15 E-value=3.4 Score=40.16 Aligned_cols=219 Identities=18% Similarity=0.144 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003433 280 FKHVVEIFDDMLRNGVQ-PDRITFNSLLAVCSRGGLWEAARNLFNEMVHR-GIDQDIFTYNTLLDAICKGAQMDLAFEIM 357 (820)
Q Consensus 280 ~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 357 (820)
...+...+......... .....+......+...+.+..+...+...... ........+..+...+...+++..+.+.+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
T COG0457 39 LAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELL 118 (291)
T ss_pred HHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34444444444433221 12344555555556666666666666555531 12233445555555555566666666666
Q ss_pred HHchhCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003433 358 AEMPAKNISPNVVTYSTMID-GYAKAGRLDDALNMFSEMKFLGI--GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSG 434 (820)
Q Consensus 358 ~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~--~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 434 (820)
.......... ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.......
T Consensus 119 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 197 (291)
T COG0457 119 EKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN 197 (291)
T ss_pred HHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC
Confidence 6655532221 112222222 55666666666666666544210 0122233333333455556666666666555433
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003433 435 IRK-DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPN-LLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (820)
Q Consensus 435 ~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (820)
.. ....+..+...+...+++++|...+...... .++ ...+..+...+...+..+++...+....+
T Consensus 198 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 198 -PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred -cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22 2445555555555556666666666655543 222 22333333333344455555555555544
No 252
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.06 E-value=0.16 Score=43.15 Aligned_cols=91 Identities=9% Similarity=0.018 Sum_probs=66.2
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhccc-cchHHHHHHHHHHHhhcCCCcc---hhHHHHHHHHHhhcCch
Q 003433 654 ACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYR-DNIWVQALSLFDEVKLMDSSTA---SAFYNALTDMLWHFGQK 729 (820)
Q Consensus 654 a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~ 729 (820)
+.+..|++++|++.|.+.+..-|+...+.++-...++ +|+.++|..-+++++++..... -..|.--+-+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 4566788888888888888777776666666555554 6777788888888887643222 23466677789999999
Q ss_pred HHHHHHHHHhhhhhh
Q 003433 730 RGAQLVVLEGKRRQV 744 (820)
Q Consensus 730 ~~A~~~~~~~~~~~~ 744 (820)
+.|+.-|..+.+.|.
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999999988877664
No 253
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.01 E-value=7.8 Score=43.54 Aligned_cols=322 Identities=15% Similarity=0.105 Sum_probs=166.3
Q ss_pred CCCCCHHHHH-----HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCC
Q 003433 223 GYGNTVYAFS-----ALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGG-VDFKHVVEIFDDMLRNGVQ 296 (820)
Q Consensus 223 ~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~~A~~~~~~m~~~g~~ 296 (820)
|++.+..-|. .+|+-+...+.+..|+++-..+...-.. +...|.....-+.+.. ..-+++++..++=+..-.
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~- 504 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL- 504 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-
Confidence 4454544443 4566677778888888887776541111 1344444455454442 112333333333222212
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHH
Q 003433 297 PDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGID----QDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTY 372 (820)
Q Consensus 297 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~----~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 372 (820)
-....|..+.+-....|+.+.|..+++.=...+-. .+..-+..-+.-..+.|+.+....++-.+... .+...+
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l 581 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSL 581 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHH
Confidence 34556777777777888888888776533222100 00111222233344455555555554444332 011111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHH----HCCCCCCHHHHHHHHH
Q 003433 373 STMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVC-KEME----SSGIRKDAVTYNALLG 447 (820)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~-~~~~----~~~~~~~~~~~~~li~ 447 (820)
. .-..+.-.|..+|.+..+.. |.. .|-+.|-...+...+-.+. +... ..+..|+. .....
T Consensus 582 ~------~~l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~ 646 (829)
T KOG2280|consen 582 F------MTLRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAAN 646 (829)
T ss_pred H------HHHHhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHH
Confidence 1 11233445666666654421 111 1223333333332222211 1110 11212222 22333
Q ss_pred HHHhcCC----------HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003433 448 GYGKQGK----------YDEVRRMFEQMKA-DCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALI 516 (820)
Q Consensus 448 ~~~~~g~----------~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 516 (820)
.+.+... ..+-.++.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.+ .||-..|..-+
T Consensus 647 ~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~ 722 (829)
T KOG2280|consen 647 AFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKL 722 (829)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHH
Confidence 4443332 1122223333322 2222333455556666777899999999887765 37999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhh
Q 003433 517 DALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQ 574 (820)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~ 574 (820)
.++...+++++-+++-+.+. .+.-|.-++.+|.+.|+.+||.+++-+.-.+.
T Consensus 723 ~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~ 774 (829)
T KOG2280|consen 723 TALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ 774 (829)
T ss_pred HHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCChH
Confidence 99999999998877666554 24456678889999999999999887655554
No 254
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=3.3 Score=41.22 Aligned_cols=143 Identities=13% Similarity=0.084 Sum_probs=75.9
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003433 308 VCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDD 387 (820)
Q Consensus 308 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 387 (820)
.....|++.+|..+|+...... +.+...-..|+.+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3455667777777777666653 223445556677777777777777777776654211112222233444455544444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC
Q 003433 388 ALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI-RKDAVTYNALLGGYGKQG 453 (820)
Q Consensus 388 A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g 453 (820)
...+-.+.-.. +-|...-..+...+...|+.++|.+.+-.+.+.+. -.|...-..|+..+.-.|
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 44444444332 33555556666666677777777666655543211 123344444555444444
No 255
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.86 E-value=0.47 Score=41.40 Aligned_cols=102 Identities=17% Similarity=0.175 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 438 DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALID 517 (820)
Q Consensus 438 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 517 (820)
|..++.+++.++++.|+++....+++..- |+..+.. ...+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34556666666666666666666665432 1221110 00000 1112345688999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhhcCc
Q 003433 518 ALCKNGLVESAVSLLDEMTKE-GIRPNVVTYNSIIDAFGRSAT 559 (820)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~ 559 (820)
+|+.+|++..|+++++...+. ++.-+..+|..|+.-+...-+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999998754 777788899999986654433
No 256
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.83 E-value=1.4 Score=39.62 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=19.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003433 198 AMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR 240 (820)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 240 (820)
.++..+...+.......+++.+...+. .+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444455555555555444432 344444444444443
No 257
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=94.80 E-value=0.11 Score=57.41 Aligned_cols=8 Identities=13% Similarity=0.148 Sum_probs=3.0
Q ss_pred HHHHHHHh
Q 003433 649 SAILNACS 656 (820)
Q Consensus 649 ~~ll~a~~ 656 (820)
+-...+|-
T Consensus 720 ~~F~~~~k 727 (830)
T KOG1923|consen 720 VRFVRAYK 727 (830)
T ss_pred HHHHHHHH
Confidence 33333333
No 258
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.67 E-value=5.8 Score=40.45 Aligned_cols=125 Identities=14% Similarity=0.077 Sum_probs=59.9
Q ss_pred HcCCCHHHHHHHHHHHHHcc-cccCChh----HHHHHHHHHHHhcC-ChHHHHHHHHHHHHc--------CCCCC-----
Q 003433 167 GNRGEWSKAIQCFAFAVKRE-ERKNDQG----KLASAMISILGRLG-KVDLAKNIFETALNE--------GYGNT----- 227 (820)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~----~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~--------~~~~~----- 227 (820)
.+.|+++.|..++.++.... ...+... ..+..++....+.+ ++++|...++++.+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45788888888888876643 2222211 12223344444555 777777666665432 01111
Q ss_pred HHHHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Q 003433 228 VYAFSALISAYGRSGYCQ---EAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN 293 (820)
Q Consensus 228 ~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~ 293 (820)
..++..|+.+|...+..+ +|..+++.+...... ....+..-+..+.+.+ +.+.+.+.+.+|+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~-~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSF-DEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccC-ChhHHHHHHHHHHHh
Confidence 234445555555554433 334444444322211 1233333344444444 555555555555554
No 259
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.64 E-value=13 Score=44.25 Aligned_cols=271 Identities=17% Similarity=0.157 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 003433 211 LAKNIFETALNEGYGNTVYAFSALISAYGRSG--YCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFD 288 (820)
Q Consensus 211 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~ 288 (820)
..-+..+....+. .|+ .-...+|..|.+.+ .++.|+....+...... .++-...+..++ -+-.+-.+|+
T Consensus 775 ~vc~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~---~~~ad~al~hll----~Lvdvn~lfn 845 (1265)
T KOG1920|consen 775 SVCDAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQV---AVSADEALKHLL----FLVDVNELFN 845 (1265)
T ss_pred HHHHHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhccc---chhHHHHHHHHH----hhccHHHHHH
Confidence 3333344444332 334 44567888899888 77888887777764211 111111111111 1112222222
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCC
Q 003433 289 DMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN 368 (820)
Q Consensus 289 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~ 368 (820)
.++.. . |. =-+++-+-..+.|..+-+-+++++.+. +.+.. ...|+. ..++++.|+.-+.++..
T Consensus 846 ~ALgt-Y--Dl--~Lal~VAq~SqkDPkEyLP~L~el~~m--~~~~r--kF~ID~--~L~ry~~AL~hLs~~~~------ 908 (1265)
T KOG1920|consen 846 SALGT-Y--DL--DLALLVAQKSQKDPKEYLPFLNELKKM--ETLLR--KFKIDD--YLKRYEDALSHLSECGE------ 908 (1265)
T ss_pred hhhcc-c--ch--HHHHHHHHHhccChHHHHHHHHHHhhc--hhhhh--heeHHH--HHHHHHHHHHHHHHcCc------
Confidence 22210 0 00 011222233344555555555555432 11111 011222 23556666666666542
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003433 369 VVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVS----YNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNA 444 (820)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 444 (820)
..|.-.++.--+.|.+.+|+.++ .++... |.+-.+-+.+...+++|.-+|+..-+. .-
T Consensus 909 -~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ek 970 (1265)
T KOG1920|consen 909 -TYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EK 970 (1265)
T ss_pred -cccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HH
Confidence 23344455555677777777666 334433 333344445566677776666544211 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003433 445 LLGGYGKQGKYDEVRRMFEQMKADCVSPNLL--TYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKN 522 (820)
Q Consensus 445 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 522 (820)
-+.+|..+|++.+|+.+..++... -|.. +-..|+.-+...++.-+|-++..+.... . .-.+..||+.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-----~---~~av~ll~ka 1039 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-----P---EEAVALLCKA 1039 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-----H---HHHHHHHhhH
Confidence 456677777777777777766432 1222 2245666666677777777766665431 1 1234445666
Q ss_pred CCHHHHHHHHHHHH
Q 003433 523 GLVESAVSLLDEMT 536 (820)
Q Consensus 523 g~~~~A~~~~~~m~ 536 (820)
..+++|+++-....
T Consensus 1040 ~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1040 KEWEEALRVASKAK 1053 (1265)
T ss_pred hHHHHHHHHHHhcc
Confidence 66777776655544
No 260
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.56 E-value=1.6 Score=48.12 Aligned_cols=178 Identities=13% Similarity=0.143 Sum_probs=120.9
Q ss_pred HHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHh----cCCh
Q 003433 175 AIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTV------YAFSALISAYGR----SGYC 244 (820)
Q Consensus 175 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~----~g~~ 244 (820)
..-+|.-++.. .|+ .+..++...+-.|+-+.+++.+.+..+.+--..+ -.|+..+..++. ....
T Consensus 176 G~G~f~L~lSl---LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~ 249 (468)
T PF10300_consen 176 GFGLFNLVLSL---LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPL 249 (468)
T ss_pred HHHHHHHHHHh---CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCH
Confidence 35667777765 233 4567889999999999999999988764322222 234444444443 4567
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhCCCHHHHHH
Q 003433 245 QEAISVFNSMKRYNLKPNLVTYNAVIDA-CGKGGVDFKHVVEIFDDMLRNG---VQPDRITFNSLLAVCSRGGLWEAARN 320 (820)
Q Consensus 245 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~g~~~~A~~ 320 (820)
+.|.++++.+.+. -|+...|...-.- +...| ++++|++.|++..... .+.....+--+.-.+.-..+|++|..
T Consensus 250 ~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g-~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 250 EEAEELLEEMLKR--YPNSALFLFFEGRLERLKG-NLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhc-CHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 8899999999874 4777777655443 45566 9999999999766421 12234556667777888999999999
Q ss_pred HHHHHHHCCCCCCHHHHH-HHHHHHHhcCCH-------HHHHHHHHHchh
Q 003433 321 LFNEMVHRGIDQDIFTYN-TLLDAICKGAQM-------DLAFEIMAEMPA 362 (820)
Q Consensus 321 ~~~~~~~~g~~~~~~~~~-~ll~~~~~~g~~-------~~A~~~~~~m~~ 362 (820)
.|..+.+..-- ...+|. ....++...|+. ++|.++|.++..
T Consensus 327 ~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 327 YFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99999986422 222232 334455667777 899999988764
No 261
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.50 E-value=1 Score=48.84 Aligned_cols=74 Identities=22% Similarity=0.342 Sum_probs=34.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003433 415 AKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAM 494 (820)
Q Consensus 415 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 494 (820)
.+.|+++.|.++.++. .+...|..|.....+.|+++-|.+.|.+... +..|+-.|.-.|+.+.-.
T Consensus 329 l~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred HhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence 3455555554433221 2444555555555555555555555554321 233444445555555555
Q ss_pred HHHHHHHHC
Q 003433 495 QIFREFKQA 503 (820)
Q Consensus 495 ~~~~~m~~~ 503 (820)
++.+.....
T Consensus 394 kl~~~a~~~ 402 (443)
T PF04053_consen 394 KLAKIAEER 402 (443)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 554444443
No 262
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.31 E-value=0.11 Score=35.54 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=28.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHH
Q 003433 647 TFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHG 684 (820)
Q Consensus 647 ~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~ 684 (820)
++..+..+|...|++++|+++|+++++.+|++..++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 45677888888888888888888888888777665443
No 263
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.30 E-value=2.5 Score=45.15 Aligned_cols=151 Identities=10% Similarity=0.067 Sum_probs=84.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003433 161 FLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR 240 (820)
Q Consensus 161 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 240 (820)
.++...-+..+.+.-+++-.+++..++ +-..+|..|. --...-..+|.++|+++++.|-. . +......
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~p---dCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE~----~---lg~s~~~ 240 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINP---DCADAYILLA--EEEASTIVEAEELLRQAVKAGEA----S---LGKSQFL 240 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhh---hhhHHHhhcc--cccccCHHHHHHHHHHHHHHHHH----h---hchhhhh
Confidence 355555667777777777777877642 2222433322 22345678888888888775311 1 1111000
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCCHHHHH
Q 003433 241 SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQ-PDRITFNSLLAVCSRGGLWEAAR 319 (820)
Q Consensus 241 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~A~ 319 (820)
+ ..-..++.+..+...+-..+-..+..++-+.| +.++|++.|++|.+.... -+......|+.++...+.+.++.
T Consensus 241 ~----~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklG-r~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q 315 (539)
T PF04184_consen 241 Q----HHGHFWEAWHRRDTNVLVYAKRRLAMCARKLG-RLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ 315 (539)
T ss_pred h----cccchhhhhhccccchhhhhHHHHHHHHHHhC-ChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence 0 00011111222222222333344566666777 788888888888765322 13346677888888888888888
Q ss_pred HHHHHHHHC
Q 003433 320 NLFNEMVHR 328 (820)
Q Consensus 320 ~~~~~~~~~ 328 (820)
.++.+..+.
T Consensus 316 ~lL~kYdDi 324 (539)
T PF04184_consen 316 ALLAKYDDI 324 (539)
T ss_pred HHHHHhccc
Confidence 888877654
No 264
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.27 E-value=0.36 Score=46.95 Aligned_cols=70 Identities=20% Similarity=0.374 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC---------------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 244 CQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGV---------------DFKHVVEIFDDMLRNGVQPDRITFNSLLAV 308 (820)
Q Consensus 244 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~---------------~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 308 (820)
++--...++.|.+.|+..|..+|+.||+.+-+... +-+-+++++++|...|+.||..+-..|+++
T Consensus 88 veFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~ 167 (406)
T KOG3941|consen 88 VEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNA 167 (406)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHH
Confidence 33334445556666666666666666665543320 123445555555555555555555555555
Q ss_pred HHhCC
Q 003433 309 CSRGG 313 (820)
Q Consensus 309 ~~~~g 313 (820)
+.+.+
T Consensus 168 FGr~~ 172 (406)
T KOG3941|consen 168 FGRWN 172 (406)
T ss_pred hcccc
Confidence 54444
No 265
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.25 E-value=9.2 Score=40.98 Aligned_cols=204 Identities=14% Similarity=0.185 Sum_probs=104.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (820)
Q Consensus 473 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 552 (820)
|....-+++..+...-+..-...+..+|+..| -+-..|..++..|..+ ..++-..+++++.+..+. |.+.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 33344455555555555555555555555544 2445555555555555 335555555555554332 3333333444
Q ss_pred HHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHH
Q 003433 553 AFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGV 632 (820)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~ 632 (820)
.|-+ ++.+.+...+.+++..+.... ...++-..+.++..- .| .+.+.-+.+
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~------------------q~~~i~evWeKL~~~-i~---------dD~D~fl~l 191 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRR------------------QNAAIKEVWEKLPEL-IG---------DDKDFFLRL 191 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchh------------------hhhhHHHHHHHHHHh-cc---------ccHHHHHHH
Confidence 3333 555555555555554433211 001112222222100 00 033334444
Q ss_pred HHHHHH-CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhccc---------------------
Q 003433 633 FQKMHK-LKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYR--------------------- 690 (820)
Q Consensus 633 ~~~m~~-~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 690 (820)
..+... .|..--.+.+..+-.-|.-..+++||++++.-+++.|..+....-+++-.++
T Consensus 192 ~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~ 271 (711)
T COG1747 192 QKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQS 271 (711)
T ss_pred HHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhc
Confidence 444432 3333345566666677888889999999988888887777666555432211
Q ss_pred cchHHHHHHHHHHHhhcCC
Q 003433 691 DNIWVQALSLFDEVKLMDS 709 (820)
Q Consensus 691 ~~~~~~A~~~~~~~~~~~~ 709 (820)
..++.++..-|++.+..+-
T Consensus 272 ~rnf~~~l~dFek~m~f~e 290 (711)
T COG1747 272 GRNFFEALNDFEKLMHFDE 290 (711)
T ss_pred cccHHHHHHHHHHHheecc
Confidence 1245567777777765433
No 266
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.23 E-value=5.4 Score=38.19 Aligned_cols=99 Identities=11% Similarity=0.100 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHhhcCCch----hHHHHHHH----hcccc
Q 003433 625 EILCILGVFQKMHKL--KIKPNV---VTFSAILNACSRCNSFEDASMLLEELRLFDNQV----YGVAHGLL----MGYRD 691 (820)
Q Consensus 625 ~~~~Al~~~~~m~~~--~~~Pd~---~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~----~~~~~~~~----~~~~~ 691 (820)
++++|+..|++.-+. |-+-+. ..+.-+..--+..|++.+|+++|+++.....++ |++-..++ ..+..
T Consensus 129 d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~ 208 (288)
T KOG1586|consen 129 DFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCK 208 (288)
T ss_pred HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhc
Confidence 555666666665431 111121 123333333456789999999999876432222 22211111 11123
Q ss_pred chHHHHHHHHHHHhhcCCCcc-hhHHHHHHHHH
Q 003433 692 NIWVQALSLFDEVKLMDSSTA-SAFYNALTDML 723 (820)
Q Consensus 692 ~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 723 (820)
.+.-.+...+++-.+++|.-. ..-+.-|-+++
T Consensus 209 ~D~v~a~~ALeky~~~dP~F~dsREckflk~L~ 241 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPAFTDSRECKFLKDLL 241 (288)
T ss_pred ccHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 455567777777788888432 22244444443
No 267
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.19 E-value=13 Score=42.46 Aligned_cols=179 Identities=15% Similarity=0.131 Sum_probs=112.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003433 195 LASAMISILGRLGKVDLAKNIFETALNEGYGNT--VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDA 272 (820)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 272 (820)
....-+..+.+...++.|..+...-. .+++ .......++.+.+.|++++|...|-+.+.. +.|. .+|.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence 34567788888888888887765432 2222 223334445566789999999888777642 2332 34555
Q ss_pred HHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003433 273 CGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDL 352 (820)
Q Consensus 273 ~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 352 (820)
|.... ....-..+++.+.+.|+. +...-..|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++
T Consensus 407 fLdaq-~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 407 FLDAQ-RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred hcCHH-HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 55555 667777788888888876 55666778889999998888777665544 2211 1113345666666677777
Q ss_pred HHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003433 353 AFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEM 395 (820)
Q Consensus 353 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 395 (820)
|..+-.+... +...... .+-..+++++|++.+..+
T Consensus 482 a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 7666555432 2333333 344578888888888765
No 268
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.19 E-value=1.9 Score=46.81 Aligned_cols=130 Identities=18% Similarity=0.214 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHH
Q 003433 301 TFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYA 380 (820)
Q Consensus 301 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 380 (820)
-.+.+++.+-+.|..+.|+++-..-. .-.+...+.|+++.|.++.++.. +...|..|.+...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~~------~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKELD------DPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCCS------THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhcC------cHHHHHHHHHHHH
Confidence 34555555555555555555432211 12334445555665555544332 4455666666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003433 381 KAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRR 460 (820)
Q Consensus 381 ~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 460 (820)
+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-.++.+.....| -+|....++...|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHH
Confidence 66666666655554321 3344445555555555555554444433 12333333344455554444
Q ss_pred HHH
Q 003433 461 MFE 463 (820)
Q Consensus 461 ~~~ 463 (820)
++.
T Consensus 424 lL~ 426 (443)
T PF04053_consen 424 LLI 426 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 269
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.17 E-value=0.48 Score=46.53 Aligned_cols=97 Identities=21% Similarity=0.248 Sum_probs=74.4
Q ss_pred HHHHHHHHHhccCCcc---hHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHH
Q 003433 125 AEEALHHVTAFARDDV---SLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMIS 201 (820)
Q Consensus 125 ~~~~l~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 201 (820)
.+.++.++.. +..+. .+...++.++.....++.+.+|...+...|++++|...|..+.+.-+..+.-...+..|+.
T Consensus 145 Y~~A~~~~ks-gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLYKS-GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4455655543 22222 3333444455555578899999999999999999999999999976655555567888999
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 003433 202 ILGRLGKVDLAKNIFETALNE 222 (820)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~ 222 (820)
+..+.|+.++|..+|+++.++
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 999999999999999999987
No 270
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.04 E-value=13 Score=42.08 Aligned_cols=179 Identities=18% Similarity=0.173 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HHhcCChhHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHcC
Q 003433 209 VDLAKNIFETALNEGYGNTVYAFSALISA-----YGRSGYCQEAISVFNSMKR-------YNLKPNLVTYNAVIDACGKG 276 (820)
Q Consensus 209 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~ 276 (820)
...|.++++.+.+.| ++.....++.+ +....+.+.|+.+|+.+.+ .| +....+.+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 457788888887765 33333333333 3355678888888887765 33 223444555555543
Q ss_pred C---C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 003433 277 G---V-DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSR-GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICK----G 347 (820)
Q Consensus 277 g---~-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~ 347 (820)
. . +.+.|+.+|.+....|.. +...+...+..... ..+...|.++|....+.| .+..+-.+..+|.. .
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCcC
Confidence 2 1 345677777777766543 43333222222222 235667777777777766 23333333333322 2
Q ss_pred CCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003433 348 AQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLG 399 (820)
Q Consensus 348 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 399 (820)
.+.+.|..++.+..+.|. |-..--...+..+.. ++++.+...+..+.+.|
T Consensus 378 r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 356666667666666651 111111112222222 55555555555555444
No 271
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.92 E-value=0.14 Score=35.10 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=13.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 003433 159 YTFLLRELGNRGEWSKAIQCFAFAVKR 185 (820)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 185 (820)
+..+...|.+.|++++|+++|+++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444455555555555555555544
No 272
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.82 E-value=1.2 Score=41.31 Aligned_cols=93 Identities=9% Similarity=-0.024 Sum_probs=63.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhc------cccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHh
Q 003433 651 ILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMG------YRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLW 724 (820)
Q Consensus 651 ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 724 (820)
=++-+.+.|++++|..-|..+++.-|....-.-.++.+ .+.+.|+.|+.---++++++|.... .+.--+.+|.
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k-Al~RRAeaye 179 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK-ALERRAEAYE 179 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH-HHHHHHHHHH
Confidence 34556788888888888888877655444332222221 2467788888888888888885533 3556677888
Q ss_pred hcCchHHHHHHHHHhhhhhh
Q 003433 725 HFGQKRGAQLVVLEGKRRQV 744 (820)
Q Consensus 725 ~~g~~~~A~~~~~~~~~~~~ 744 (820)
+..++++|.+-+++..+...
T Consensus 180 k~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDP 199 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCc
Confidence 88888888888877665543
No 273
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.80 E-value=0.99 Score=39.39 Aligned_cols=47 Identities=13% Similarity=0.015 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHH
Q 003433 401 GLDRVSYNTVLSIYAKLGRFEEALLVCKEMES-SGIRKDAVTYNALLG 447 (820)
Q Consensus 401 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~ 447 (820)
.|+..+..+++.+|+..|++..|+++.+...+ -+++.+..+|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34444444444444444444444444444321 233334444444443
No 274
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.76 E-value=8.9 Score=39.10 Aligned_cols=102 Identities=12% Similarity=0.068 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003433 405 VSYNTVLSIYAKLGRFE---EALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLI 481 (820)
Q Consensus 405 ~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 481 (820)
.++..|+.+|...+..+ +|..+++.+.... ...+.++..-+..+.+.++.+++.+++.+|+..- .-....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 34566677777766544 4455555553322 2234455455566666778888888888887652 21223333344
Q ss_pred HHH---HhcCCHHHHHHHHHHHHHCCCCCCH
Q 003433 482 DVY---SKGGLYKEAMQIFREFKQAGLKADV 509 (820)
Q Consensus 482 ~~~---~~~g~~~~A~~~~~~m~~~~~~p~~ 509 (820)
..+ ... ....|...++.++...+.+..
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 333 332 334555666655544344433
No 275
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.72 E-value=4.2 Score=36.36 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=9.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 003433 234 LISAYGRSGYCQEAISVFNSMKR 256 (820)
Q Consensus 234 li~~~~~~g~~~~A~~~~~~m~~ 256 (820)
+|..+...+.......+++.+..
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~ 35 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALK 35 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHc
Confidence 33333333444444444444433
No 276
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.58 E-value=0.15 Score=32.58 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhcCCc
Q 003433 646 VTFSAILNACSRCNSFEDASMLLEELRLFDNQ 677 (820)
Q Consensus 646 ~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~ 677 (820)
.+|..++.+|...|++++|...|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46778888888889999998888888887775
No 277
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=93.51 E-value=13 Score=39.99 Aligned_cols=67 Identities=18% Similarity=0.109 Sum_probs=36.2
Q ss_pred CChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHhC
Q 003433 190 NDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA-YGRSGYCQEAISVFNSMKRY 257 (820)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~ 257 (820)
+.+..+|..-+..+-+.+.+.+..++|..|+... +.++..|-.-..- |-.+-+++.|..+|.+-++.
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 3345566666665555555666666666666542 2345555433332 22233366666666666553
No 278
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.20 E-value=2.6 Score=42.32 Aligned_cols=154 Identities=15% Similarity=0.073 Sum_probs=103.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH--HH--HHHHcCCC
Q 003433 203 LGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNA--VI--DACGKGGV 278 (820)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~--ll--~~~~~~g~ 278 (820)
+...|++.+|...++++++. ++-|..++.-.-+++..+|+.+.-...++++... ..++...|.. -+ -++...|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g- 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECG- 189 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhc-
Confidence 45678888888888888875 5567888888888888888888888888888743 1244433322 22 2335667
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003433 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHR---GIDQDIFTYNTLLDAICKGAQMDLAFE 355 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---g~~~~~~~~~~ll~~~~~~g~~~~A~~ 355 (820)
-+++|.+.-++..+.+.. |...-.++...+--.|+..++.+...+-... +--.-...|=...-.+...+.++.|++
T Consensus 190 ~y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 788888888888876433 6667777777777888888888876654322 100112223334445666789999999
Q ss_pred HHHHc
Q 003433 356 IMAEM 360 (820)
Q Consensus 356 ~~~~m 360 (820)
+|+.-
T Consensus 269 IyD~e 273 (491)
T KOG2610|consen 269 IYDRE 273 (491)
T ss_pred HHHHH
Confidence 99754
No 279
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.14 E-value=2.3 Score=37.61 Aligned_cols=77 Identities=19% Similarity=0.214 Sum_probs=44.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003433 445 LLGGYGKQGKYDEVRRMFEQMKADCV--SPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK 521 (820)
Q Consensus 445 li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 521 (820)
-.....+.|++++|.+.|+.+..+-- +-....-..|+.+|.+.+++++|...+++.++..+.-.-+-|...+.+++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 34445566777777777777766521 112334455677777777777777777777776543333444444444443
No 280
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.11 E-value=20 Score=41.28 Aligned_cols=185 Identities=15% Similarity=0.186 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHc-ccccCChhHHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChhH
Q 003433 174 KAIQCFAFAVKR-EERKNDQGKLASAMISILG-RLGKVDLAKNIFETALNEGYGNT-----VYAFSALISAYGRSGYCQE 246 (820)
Q Consensus 174 ~A~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~ 246 (820)
.|+++++-+.+. ...+.....++..++..|. ...++++|+..+++.......++ -.....++..|.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 356666666532 1112223445556666666 56778888888877754322222 122335566666666665
Q ss_pred HHHHHHHHHhCC----CCCCHHHHHHH-HHHHHcCCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHH--HhCCCHH
Q 003433 247 AISVFNSMKRYN----LKPNLVTYNAV-IDACGKGGVDFKHVVEIFDDMLRNG---VQPDRITFNSLLAVC--SRGGLWE 316 (820)
Q Consensus 247 A~~~~~~m~~~~----~~p~~~~~~~l-l~~~~~~g~~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~--~~~g~~~ 316 (820)
|...+++.++.- ..+-...+..+ +..+...+ ++..|.+.++.....- ..+...++..++.+. .+.+..+
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~-d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHK-DYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 777777765421 11111222222 22222335 6777777777766432 222333444444433 2344455
Q ss_pred HHHHHHHHHHHCCC---------CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHc
Q 003433 317 AARNLFNEMVHRGI---------DQDIFTYNTLLDAIC--KGAQMDLAFEIMAEM 360 (820)
Q Consensus 317 ~A~~~~~~~~~~g~---------~~~~~~~~~ll~~~~--~~g~~~~A~~~~~~m 360 (820)
++.+..+++..... .|-..+|..+++.++ ..|+++.+...++++
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56655555533211 223455555555543 355555555554443
No 281
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.99 E-value=8.3 Score=38.93 Aligned_cols=114 Identities=9% Similarity=0.024 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003433 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHR---GIDQDIFTYNTLLDAICKGAQMDLAFE 355 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---g~~~~~~~~~~ll~~~~~~g~~~~A~~ 355 (820)
++.+|-..++++++. .+.|...+...=++|.-.|+.+.-...+++++.. +++-...+-..+.-++..+|-+++|++
T Consensus 118 ~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk 196 (491)
T KOG2610|consen 118 KHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEK 196 (491)
T ss_pred cccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHH
Confidence 445555555555554 2335555555555566666666666666665543 111112222333444455666666666
Q ss_pred HHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003433 356 IMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSE 394 (820)
Q Consensus 356 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 394 (820)
.-++..+.+. .|...-.++...+-..|++.++.+.+.+
T Consensus 197 ~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 197 QADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 6666555432 2455555555666666666666665543
No 282
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.89 E-value=9.2 Score=39.16 Aligned_cols=128 Identities=16% Similarity=0.260 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--CC---CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhCCC---
Q 003433 246 EAISVFNSMKRYNLKPNLVTYNAVIDACGK--GG---VDFKHVVEIFDDMLRNGV---QPDRITFNSLLAVCSRGGL--- 314 (820)
Q Consensus 246 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~g---~~~~~A~~~~~~m~~~g~---~p~~~~~~~ll~~~~~~g~--- 314 (820)
+.+.+++.|.+.|++.+..+|-+....... .. .....|..+|+.|.+.-. .++..++..|+.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344555555555555555444332222211 11 023455566666665421 2233444444333 2222
Q ss_pred -HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHchhCCCCCCHHHHHHH
Q 003433 315 -WEAARNLFNEMVHRGIDQDI--FTYNTLLDAICKGAQ--MDLAFEIMAEMPAKNISPNVVTYSTM 375 (820)
Q Consensus 315 -~~~A~~~~~~~~~~g~~~~~--~~~~~ll~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l 375 (820)
.+.++.+|+.+.+.|+..+- .....++........ ...+.++++.+.+.|++.....|..+
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 23444555555554443221 122222222111111 23455555555555555444444433
No 283
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.65 E-value=6.2 Score=34.11 Aligned_cols=59 Identities=15% Similarity=0.238 Sum_probs=29.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003433 410 VLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC 469 (820)
Q Consensus 410 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 469 (820)
-++.+...|+-|.-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3444555555555555555554332 4555555556666666666666666666655554
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.57 E-value=0.21 Score=32.41 Aligned_cols=25 Identities=16% Similarity=0.044 Sum_probs=22.2
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHhh
Q 003433 716 YNALTDMLWHFGQKRGAQLVVLEGK 740 (820)
Q Consensus 716 ~~~l~~~~~~~g~~~~A~~~~~~~~ 740 (820)
|..|+++|.+.|++++|+.++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7889999999999999999999865
No 285
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.41 E-value=14 Score=37.77 Aligned_cols=25 Identities=20% Similarity=0.555 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHH
Q 003433 491 KEAMQIFREFKQAGLKADVVLYSAL 515 (820)
Q Consensus 491 ~~A~~~~~~m~~~~~~p~~~~~~~l 515 (820)
..+.++++.+.+.|++.....|..+
T Consensus 199 ~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 199 ARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHcCCccccccccHH
Confidence 3455556666666655555555444
No 286
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.39 E-value=0.27 Score=31.21 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=22.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCCc
Q 003433 647 TFSAILNACSRCNSFEDASMLLEELRLFDNQ 677 (820)
Q Consensus 647 ~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~ 677 (820)
.|..++..|.+.|++++|++.|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4566777788888888888888887776664
No 287
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.36 E-value=8.5 Score=35.03 Aligned_cols=125 Identities=16% Similarity=0.216 Sum_probs=72.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHH--HHHcCCC
Q 003433 203 LGRLGKVDLAKNIFETALNEGYGNTV-YAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLV-TYNAVID--ACGKGGV 278 (820)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~--~~~~~g~ 278 (820)
+.+.+..++|+.-|..+.+.|...-. -..--........|+...|+..|+++-.....|-.. -...|=. .+...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g- 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG- 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc-
Confidence 45667777888888877776654221 122223344566777778888888776544444333 1111222 234566
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 003433 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHR 328 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 328 (820)
.+++.....+-+...+-.--...-..|.-+-.+.|++..|.+.|.++...
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 67776666666554443333344455666666777777777777776653
No 288
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.31 E-value=7.9 Score=35.25 Aligned_cols=138 Identities=14% Similarity=0.079 Sum_probs=92.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---HHHHH
Q 003433 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVY---AFSAL 234 (820)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l 234 (820)
.|..-++ +.+.+..++|+..|....+.+...-+ .-..-.+.......|+...|...|+++-+....|-.. .-.--
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~Yp-vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYP-VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcch-HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 3433333 67788999999999999887643322 2233456677888999999999999997754444332 11112
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCC
Q 003433 235 ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPD 298 (820)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~ 298 (820)
.-.+..+|.+++.....+-+...+-.--...-..|.-+-.+.| ++.+|.++|..+......|-
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kag-d~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAG-DFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhcc-chHHHHHHHHHHHccccCcH
Confidence 2245678999998888887765332222334455666667889 99999999999887544443
No 289
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.29 E-value=6.9 Score=33.83 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=26.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCC
Q 003433 302 FNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN 364 (820)
Q Consensus 302 ~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 364 (820)
+...+..+...|+-|+-.+++..+.+.+ +++....-.+..+|.+.|+..++-+++.+.-+.|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3334444445555555555555444321 3344444445555555555555555554444443
No 290
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.22 E-value=12 Score=36.51 Aligned_cols=66 Identities=12% Similarity=0.086 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH----HHhhcCchhhhHHhHHHHhhhhh
Q 003433 510 VLYSALIDALCKNGLVESAVSLLDEMTKE-GIRPNVVTYNSIID----AFGRSATTECTVDDVERDLGKQK 575 (820)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~----~~~~~g~~~~a~~~~~~~l~~~~ 575 (820)
..|..-|..|..+.+-..-..+|++.+.. .-.|.+.+...+-. ...+.|.+++|-.-+.++.+...
T Consensus 192 EiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYD 262 (440)
T KOG1464|consen 192 EIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 262 (440)
T ss_pred hhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccc
Confidence 34555566666666666666677766532 22344443332222 12455667766665555555433
No 291
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.22 E-value=1.5 Score=43.80 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 003433 475 LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK-----EGIRPNVVTYNS 549 (820)
Q Consensus 475 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 549 (820)
.++..++..+...|+++.+...++++....+. +...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 45666777888888888888888888887654 788888888899999988888888888765 488888888877
Q ss_pred HHHHH
Q 003433 550 IIDAF 554 (820)
Q Consensus 550 ll~~~ 554 (820)
...+.
T Consensus 233 y~~~~ 237 (280)
T COG3629 233 YEEIL 237 (280)
T ss_pred HHHHh
Confidence 77663
No 292
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.18 E-value=12 Score=36.48 Aligned_cols=209 Identities=14% Similarity=0.181 Sum_probs=108.1
Q ss_pred CHHHHHHHHHHchhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHHcCCH
Q 003433 349 QMDLAFEIMAEMPAKNISPNV---VTYSTMIDGYAKAGRLDDALNMFSEMKFL---GI--GLDRVSYNTVLSIYAKLGRF 420 (820)
Q Consensus 349 ~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~--~~d~~~~~~li~~~~~~g~~ 420 (820)
+.++|+.-|++..+..-..-. .+...+|..+.+.|++++.++.+.+|... .+ .-+..+.|++++......+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 445555555554432111111 12334556666666666666666665421 00 12334556666665555555
Q ss_pred HHHHHHHHHHHHC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHH
Q 003433 421 EEALLVCKEMESS-GIRKD----AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVS-----------PNLLTYSTLIDVY 484 (820)
Q Consensus 421 ~~A~~~~~~~~~~-~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----------p~~~~~~~li~~~ 484 (820)
+--.+.|+.-++. .-..| -.|-.-|...|...+.+.+..++++++...... .=...|..-|++|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 5444444332110 00111 123345667777777777777777776543211 1135567778888
Q ss_pred HhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHH----HHHHHHcCCHHHHHHHHHHHHH----CCCCCCHH---HHHHHHH
Q 003433 485 SKGGLYKEAMQIFREFKQAG-LKADVVLYSAL----IDALCKNGLVESAVSLLDEMTK----EGIRPNVV---TYNSIID 552 (820)
Q Consensus 485 ~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~---~~~~ll~ 552 (820)
....+-.+...++++.+... -.|.+.....+ .....+.|++++|-.-|-++-+ .| .|-.. -|..|.+
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVLAN 280 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLAN 280 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHHHH
Confidence 88888788888888765421 22444433322 1234577888888654444432 23 33333 3455556
Q ss_pred HHhhcC
Q 003433 553 AFGRSA 558 (820)
Q Consensus 553 ~~~~~g 558 (820)
.+.+.|
T Consensus 281 MLmkS~ 286 (440)
T KOG1464|consen 281 MLMKSG 286 (440)
T ss_pred HHHHcC
Confidence 665554
No 293
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.02 E-value=18 Score=42.55 Aligned_cols=63 Identities=13% Similarity=0.075 Sum_probs=36.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHH--HHHHHhcCChHHHHHHHHHHHH
Q 003433 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAM--ISILGRLGKVDLAKNIFETALN 221 (820)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~ 221 (820)
+..=+..+.+..++++|+.+-+.....++...........+ +--+..+|++++|...|+++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 55556667777778888887765544322111111111111 1235677888899888888854
No 294
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.73 E-value=0.27 Score=31.90 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=22.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHh
Q 003433 647 TFSAILNACSRCNSFEDASMLLEELR 672 (820)
Q Consensus 647 ~~~~ll~a~~~~g~~~eA~~~~~~~~ 672 (820)
+|..|+.+|.+.|++++|+++|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47889999999999999999999965
No 295
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.33 E-value=0.38 Score=30.46 Aligned_cols=30 Identities=10% Similarity=0.069 Sum_probs=23.2
Q ss_pred hHHHHHHHHHhhcCchHHHHHHHHHhhhhh
Q 003433 714 AFYNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (820)
Q Consensus 714 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (820)
..+..++.+|.+.|++++|++.++++.+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 357788899999999999999888876543
No 296
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.26 E-value=9 Score=34.69 Aligned_cols=96 Identities=17% Similarity=0.097 Sum_probs=55.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCC
Q 003433 200 ISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVD 279 (820)
Q Consensus 200 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 279 (820)
+..-.+.++.+++..+++.+.-..+. ....-..-...+.+.|++.+|+.+|+++.+.+ |....-..|+..|.... .
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~-~ 92 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYAL-G 92 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHc-C
Confidence 33445667788888888877664322 23333344556677888888888888877643 34444455555555444 2
Q ss_pred HHHHHHHHHHHHHCCCCCCH
Q 003433 280 FKHVVEIFDDMLRNGVQPDR 299 (820)
Q Consensus 280 ~~~A~~~~~~m~~~g~~p~~ 299 (820)
-..-...-+++.+.+..|+.
T Consensus 93 D~~Wr~~A~evle~~~d~~a 112 (160)
T PF09613_consen 93 DPSWRRYADEVLESGADPDA 112 (160)
T ss_pred ChHHHHHHHHHHhcCCChHH
Confidence 23444445556665444333
No 297
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.14 E-value=23 Score=41.78 Aligned_cols=18 Identities=11% Similarity=-0.143 Sum_probs=10.0
Q ss_pred HHhcCChHHHHHHHHHHH
Q 003433 203 LGRLGKVDLAKNIFETAL 220 (820)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~ 220 (820)
+.+.+++++|..+...|.
T Consensus 1007 ~i~~~~y~~a~~i~~~ia 1024 (1049)
T KOG0307|consen 1007 SIKNRDYSEALQIHAQIA 1024 (1049)
T ss_pred HHhhccHHHHHHHHHHHh
Confidence 344456666666555554
No 298
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.02 E-value=2.6 Score=39.20 Aligned_cols=95 Identities=16% Similarity=0.077 Sum_probs=59.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 241 (820)
+.+.+...+++++|..-+++.+.......-...+-..|.+.....|.+|+|..+++.....+. .......-.+++...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 566777777888888777777754211111122334566777777777777777777655321 233344556677777
Q ss_pred CChhHHHHHHHHHHhCC
Q 003433 242 GYCQEAISVFNSMKRYN 258 (820)
Q Consensus 242 g~~~~A~~~~~~m~~~~ 258 (820)
|+-++|+.-|+...+.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 77777777777776643
No 299
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.82 E-value=36 Score=39.26 Aligned_cols=389 Identities=9% Similarity=0.011 Sum_probs=200.1
Q ss_pred chHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003433 140 VSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETA 219 (820)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 219 (820)
..+...+...+.-+.....-..-+..+.+.++|.+.++++.. .+.+.......+.++...|+.++|......+
T Consensus 83 ~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-------~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~l 155 (644)
T PRK11619 83 VQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPE-------KPKPVEARCNYYYAKWATGQQQEAWQGAKEL 155 (644)
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCC-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444432222222223355566778888877763311 2344445566778888889988888877777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHH--HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----
Q 003433 220 LNEGYGNTVYAFSALISAYGRSGYCQEAI--SVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLR----- 292 (820)
Q Consensus 220 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~--~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~----- 292 (820)
-..|.. .....+.+...+.+.|.+.... +-++.+...| +...-..++..+. . +.....+.+..+.+
T Consensus 156 W~~g~~-~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~--~-~~~~~a~a~~al~~~p~~~ 228 (644)
T PRK11619 156 WLTGKS-LPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLP--A-DYQTIASALIKLQNDPNTV 228 (644)
T ss_pred hccCCC-CChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcC--h-hHHHHHHHHHHHHHCHHHH
Confidence 655533 4567788888888777655432 2222223221 2222222222221 0 11111111111111
Q ss_pred ----CCCCCCHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHchhC
Q 003433 293 ----NGVQPDRITFNSLLAVC--SRGGLWEAARNLFNEMVHRG-IDQD--IFTYNTLLDAICKGAQMDLAFEIMAEMPAK 363 (820)
Q Consensus 293 ----~g~~p~~~~~~~ll~~~--~~~g~~~~A~~~~~~~~~~g-~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 363 (820)
..+.++...-..++-++ ....+.+.|..++..+.... +.+. ..++..+.......+...+|...++.....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~ 308 (644)
T PRK11619 229 ETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR 308 (644)
T ss_pred HHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc
Confidence 01122322222122222 13456688999998875442 2221 234455554444544467788888876544
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003433 364 NISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYN 443 (820)
Q Consensus 364 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 443 (820)
.. |.......+....+.++++.+...+..|.... .-...-.--+..++...|+.++|...|+.+.. .. +|.
T Consensus 309 ~~--~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fY 379 (644)
T PRK11619 309 SQ--STSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFY 379 (644)
T ss_pred cC--CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcH
Confidence 32 33444445556668999999999998885542 22344455667777778999999999998743 12 232
Q ss_pred HHHHHHHhcCCH---HH--HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 444 ALLGGYGKQGKY---DE--VRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDA 518 (820)
Q Consensus 444 ~li~~~~~~g~~---~~--A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 518 (820)
.++.. .+.|.. .. .... .... ..+. -..-+..+...|...+|...+..+.+. .+......+...
T Consensus 380 G~LAa-~~Lg~~~~~~~~~~~~~-~~~~----~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~ 448 (644)
T PRK11619 380 PMVAA-QRLGEEYPLKIDKAPKP-DSAL----TQGP--EMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARY 448 (644)
T ss_pred HHHHH-HHcCCCCCCCCCCCCch-hhhh----ccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHH
Confidence 22221 111211 00 0000 0000 0000 112234555678888888888877764 345555556666
Q ss_pred HHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHhhcCchhhhH
Q 003433 519 LCKNGLVESAVSLLDEMTKEG----IRPNVVTYNSIIDAFGRSATTECTV 564 (820)
Q Consensus 519 ~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~ll~~~~~~g~~~~a~ 564 (820)
..+.|..+.++.........+ --|. .|...+..+++.-.++.+.
T Consensus 449 A~~~g~~~~ai~~~~~~~~~~~~~~rfp~--~~~~~~~~~a~~~~v~~~l 496 (644)
T PRK11619 449 AFNQQWWDLSVQATIAGKLWDHLEERFPL--AWNDEFRRYTSGKGIPQSY 496 (644)
T ss_pred HHHCCCHHHHHHHHhhchhHHHHHHhCCc--chHHHHHHHHHHcCCCHHH
Confidence 667777777776655432210 0121 3555566555554555443
No 300
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=90.80 E-value=25 Score=37.30 Aligned_cols=41 Identities=12% Similarity=0.103 Sum_probs=31.2
Q ss_pred HHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003433 144 DILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVK 184 (820)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 184 (820)
.+...+...+-..+.+..+...+.++|+.+.|.++.++++-
T Consensus 28 ~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf 68 (360)
T PF04910_consen 28 ALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALF 68 (360)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333344455678888899999999999999999998864
No 301
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.48 E-value=1.4 Score=40.31 Aligned_cols=53 Identities=19% Similarity=0.161 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHhhcCCchhHHHHHHHhcc------------ccchHHHHHHHHHHHhhcCCCc
Q 003433 659 NSFEDASMLLEELRLFDNQVYGVAHGLLMGY------------RDNIWVQALSLFDEVKLMDSST 711 (820)
Q Consensus 659 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~A~~~~~~~~~~~~~~ 711 (820)
..+++|+.-|++++.++|..+..+.++...+ ....+++|...|++++..+|++
T Consensus 49 ~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 49 KMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3567777778888889999888887775443 1245888999999999999964
No 302
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.47 E-value=16 Score=34.64 Aligned_cols=86 Identities=23% Similarity=0.227 Sum_probs=54.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHH
Q 003433 205 RLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVV 284 (820)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~ 284 (820)
..|-.+.|+-=|...+...+. -+.+||-|.-.+...|+++.|.+.|+...+.+..-+-...|.-|..| -.| ++.-|.
T Consensus 77 SlGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~g-R~~LAq 153 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGG-RYKLAQ 153 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecC-chHhhH
Confidence 334445555555555554322 46788888888889999999999999888754332333334444433 345 678887
Q ss_pred HHHHHHHHC
Q 003433 285 EIFDDMLRN 293 (820)
Q Consensus 285 ~~~~~m~~~ 293 (820)
+-|.+.-+.
T Consensus 154 ~d~~~fYQ~ 162 (297)
T COG4785 154 DDLLAFYQD 162 (297)
T ss_pred HHHHHHHhc
Confidence 777776655
No 303
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.33 E-value=1.1 Score=44.85 Aligned_cols=107 Identities=15% Similarity=0.049 Sum_probs=70.9
Q ss_pred hhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHH-Hhc-cccchHHHH
Q 003433 621 RCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGL-LMG-YRDNIWVQA 697 (820)
Q Consensus 621 ~~~~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~A 697 (820)
...|+++||+.+|.+.+. +.| |.+++..-..||.+..++..|+.=...++.+|.. |.-.+.- ..+ ..-|+..+|
T Consensus 108 FKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 108 FKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhHHHH
Confidence 345689999999998776 778 8999999999999999998887766666543321 1100100 001 134788999
Q ss_pred HHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHH
Q 003433 698 LSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLV 735 (820)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 735 (820)
.+-++.+++++|++ +-|-..|.+.....|+.-+
T Consensus 185 KkD~E~vL~LEP~~-----~ELkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 185 KKDCETVLALEPKN-----IELKKSLARINSLRERKIA 217 (536)
T ss_pred HHhHHHHHhhCccc-----HHHHHHHHHhcchHhhhHH
Confidence 99999999999964 2344444444444444433
No 304
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.20 E-value=71 Score=41.58 Aligned_cols=324 Identities=11% Similarity=0.099 Sum_probs=171.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003433 161 FLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR 240 (820)
Q Consensus 161 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 240 (820)
.+..+-.+.+.|.+|+..++.-.............+..+-..|+..+++|....+...-.. .++ ...-|-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHh
Confidence 3555667788999999999873111111112233455555699999999998888775221 222 3345556778
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhCCCHHHHH
Q 003433 241 SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSL-LAVCSRGGLWEAAR 319 (820)
Q Consensus 241 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~A~ 319 (820)
.|++++|...|+.+.+.+.. ...+++.++......+ .++.++-..+-.... ..+....++++ +.+--+.+++|...
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~-~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQ-HLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhccc-chhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 89999999999999975422 4677888888777777 777777755555433 22233334333 33446777888777
Q ss_pred HHHHHHHHCCCCCCHHHHHHH--HHHHHhcCCHH--HHHHHHHHchhC--------CCC-CCHHHHHHHHHHHHHcCCHH
Q 003433 320 NLFNEMVHRGIDQDIFTYNTL--LDAICKGAQMD--LAFEIMAEMPAK--------NIS-PNVVTYSTMIDGYAKAGRLD 386 (820)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~l--l~~~~~~g~~~--~A~~~~~~m~~~--------g~~-p~~~~~~~li~~~~~~g~~~ 386 (820)
..+. +. +..+|.+. +....+..+-| .-.+.++.+.+. +.. .-...|..++....-..--.
T Consensus 1539 ~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1539 SYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred hhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 7665 21 23333332 23322222111 111222222211 110 01123333333322211111
Q ss_pred HHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHC----CCC-CCHHHHHHHHHHHHhcCCHHHHH
Q 003433 387 DALNMFSEMK-FLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEM-ESS----GIR-KDAVTYNALLGGYGKQGKYDEVR 459 (820)
Q Consensus 387 ~A~~~~~~m~-~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~ 459 (820)
. .+.+.... .....-+..-|..-+..-....+..+-+-.+++. ... +.. .-..+|-...+...+.|+++.|.
T Consensus 1612 ~-~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1612 S-IEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred H-HHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 1 11111100 0000111111222222211112222222222221 111 111 22467888888888899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003433 460 RMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAG 504 (820)
Q Consensus 460 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 504 (820)
..+-...+.+ . ...+-.........|+...|+.++++..+..
T Consensus 1691 nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1691 NALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 8887776664 2 3445566777888999999999999988643
No 305
>PRK09687 putative lyase; Provisional
Probab=90.19 E-value=23 Score=36.02 Aligned_cols=233 Identities=12% Similarity=0.068 Sum_probs=124.9
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHchhCCCCCCHHHHH
Q 003433 298 DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQM----DLAFEIMAEMPAKNISPNVVTYS 373 (820)
Q Consensus 298 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~~~~ 373 (820)
|.......+..+...|.. .+...+..+.+ ..|...-...+.++++.|+. +++...+..+... .++...-.
T Consensus 36 d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 444444455555555432 22222233333 23555555556666666652 3556666555322 23545554
Q ss_pred HHHHHHHHcCC-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 374 TMIDGYAKAGR-----LDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGG 448 (820)
Q Consensus 374 ~li~~~~~~g~-----~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 448 (820)
..+.++...+. ...+...+..+.. .++..+-...+.++.+.++ ++++..+-.+.+ .+|..+-...+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence 55555544432 1223333333332 2355555566666666665 456666666654 3444555555555
Q ss_pred HHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003433 449 YGKQG-KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVES 527 (820)
Q Consensus 449 ~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 527 (820)
+.+.+ +...+...+..+.. .+|..+-...+.++.+.|+ ..|+..+-...+.+ + .....+.++...|.. +
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-T 252 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-h
Confidence 65543 23456666666654 3466667777777777777 45666665555542 2 234567777777774 6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 003433 528 AVSLLDEMTKEGIRPNVVTYNSIIDAFG 555 (820)
Q Consensus 528 A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 555 (820)
|+..+.++.+. .||..+-...+.+|.
T Consensus 253 a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 253 LLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 88888887763 346666555555553
No 306
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.18 E-value=3.4 Score=41.41 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=24.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003433 409 TVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQM 465 (820)
Q Consensus 409 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 465 (820)
.++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++
T Consensus 158 ~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 158 KLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 33444444444444444444444333 334444444444444444444444444443
No 307
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.72 E-value=16 Score=33.52 Aligned_cols=101 Identities=19% Similarity=0.254 Sum_probs=50.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 003433 249 SVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHR 328 (820)
Q Consensus 249 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 328 (820)
++++.+.+.++.|+...|..+++.+.+.| .+. .+..+++.++-+|.......+-.+.. ....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~-~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNG-QFS----QLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHH----HHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 34444555566666667777777777666 543 33344445555555554443322222 222233333333322
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q 003433 329 GIDQDIFTYNTLLDAICKGAQMDLAFEIMAEM 360 (820)
Q Consensus 329 g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m 360 (820)
=...+..+++.+...|++-+|+++.+..
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0013444556666667777776666654
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.33 E-value=45 Score=38.07 Aligned_cols=26 Identities=23% Similarity=0.087 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 003433 230 AFSALISAYGRSGYCQEAISVFNSMK 255 (820)
Q Consensus 230 ~~~~li~~~~~~g~~~~A~~~~~~m~ 255 (820)
++..+|..+.-.|++++|-...-.|.
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHh
Confidence 34444444444455555544444444
No 309
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.81 E-value=51 Score=38.05 Aligned_cols=406 Identities=14% Similarity=0.104 Sum_probs=205.1
Q ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHcccccCCh---hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCCHHH
Q 003433 159 YTFLLRELG-NRGEWSKAIQCFAFAVKREERKNDQ---GKLASAMISILGRLGKVDLAKNIFETALNEGY----GNTVYA 230 (820)
Q Consensus 159 ~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~ 230 (820)
...++..|. ...++++|...+++++.......-. ......++..+.+.+... |....++.++.-- ..-...
T Consensus 62 ~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~ 140 (608)
T PF10345_consen 62 RLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYA 140 (608)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHH
Confidence 444677666 5779999999999887654221111 122345677777777766 9999888765311 112233
Q ss_pred HHHH-HHHHHhcCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCC---------
Q 003433 231 FSAL-ISAYGRSGYCQEAISVFNSMKRYN---LKPNLVTYNAVIDACG--KGGVDFKHVVEIFDDMLRNGV--------- 295 (820)
Q Consensus 231 ~~~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~ll~~~~--~~g~~~~~A~~~~~~m~~~g~--------- 295 (820)
|.-+ +..+...+++..|++.++.+...- ..|-...+-.++.+.. +.+ ..+++.+..+++.....
T Consensus 141 frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~-~~~d~~~~l~~~~~~~~~~q~~~~~~ 219 (608)
T PF10345_consen 141 FRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRG-SPDDVLELLQRAIAQARSLQLDPSVH 219 (608)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHhhcccCCCCC
Confidence 3333 333434489999999999886532 3344555555555543 334 46777777777743221
Q ss_pred CCCHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHC---C-CC--------------------------CCHHH-------
Q 003433 296 QPDRITFNSLLAVC--SRGGLWEAARNLFNEMVHR---G-ID--------------------------QDIFT------- 336 (820)
Q Consensus 296 ~p~~~~~~~ll~~~--~~~g~~~~A~~~~~~~~~~---g-~~--------------------------~~~~~------- 336 (820)
.|-..+|..+++.+ ...|+++.+...+.++.+. . -. +..+.
T Consensus 220 ~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l 299 (608)
T PF10345_consen 220 IPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEEL 299 (608)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHH
Confidence 23456677777655 4577877777665554321 0 00 01111
Q ss_pred --HHHHHHH--HHhcCCHHHHHHHH-------HHch-hCCCCCC--------HHHHHHHHHH---------HHHcCCHHH
Q 003433 337 --YNTLLDA--ICKGAQMDLAFEIM-------AEMP-AKNISPN--------VVTYSTMIDG---------YAKAGRLDD 387 (820)
Q Consensus 337 --~~~ll~~--~~~~g~~~~A~~~~-------~~m~-~~g~~p~--------~~~~~~li~~---------~~~~g~~~~ 387 (820)
..-++.+ ++..+..++|.+.+ ++.. .....+. ...|...+.. .+-.+++..
T Consensus 300 ~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~ 379 (608)
T PF10345_consen 300 YALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSK 379 (608)
T ss_pred HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence 1111222 23344444554444 4444 1111111 1223222222 345788999
Q ss_pred HHHHHHHHHHCCC-CCC-------HHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHH--HHHH
Q 003433 388 ALNMFSEMKFLGI-GLD-------RVSYNTVLSIYAKLGRFEEALLVCK--------EMESSGIRKDAVTYNAL--LGGY 449 (820)
Q Consensus 388 A~~~~~~m~~~~~-~~d-------~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l--i~~~ 449 (820)
|...+++|..... .|+ ..++....-.+-..|+.+.|+..|. .....+...+..++..| +..+
T Consensus 380 a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~ 459 (608)
T PF10345_consen 380 ATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIIL 459 (608)
T ss_pred HHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHh
Confidence 9999998876421 111 2222223334456799999999997 44444544444444332 2222
Q ss_pred Hhc--CCHHH--HHHHHHHHHHC---CCCCCHHHHHHH-HHHHHhcC--CHHHHHHHHHHHHHC---CCCCC---HHHHH
Q 003433 450 GKQ--GKYDE--VRRMFEQMKAD---CVSPNLLTYSTL-IDVYSKGG--LYKEAMQIFREFKQA---GLKAD---VVLYS 513 (820)
Q Consensus 450 ~~~--g~~~~--A~~~~~~m~~~---~~~p~~~~~~~l-i~~~~~~g--~~~~A~~~~~~m~~~---~~~p~---~~~~~ 513 (820)
... ...++ +.++++.+... ....+..++..+ +.++.... ...++...+.+..+. ....+ ..+++
T Consensus 460 ~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~ 539 (608)
T PF10345_consen 460 QYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLN 539 (608)
T ss_pred HhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 222 22333 67777766442 112233344444 44443221 122444433332211 01111 22333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC--HHHHHHHHH-----HHhhcCchhhhHHhH
Q 003433 514 ALIDALCKNGLVESAVSLLDEMTKE-GIRPN--VVTYNSIID-----AFGRSATTECTVDDV 567 (820)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~--~~~~~~ll~-----~~~~~g~~~~a~~~~ 567 (820)
.|...+. .|+..+..+........ .-.|| ...|..+.+ .+...|+.++|....
T Consensus 540 lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~ 600 (608)
T PF10345_consen 540 LMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEAR 600 (608)
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 3333333 68877766655544321 11233 335644333 466778888876643
No 310
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.78 E-value=4.5 Score=37.64 Aligned_cols=87 Identities=13% Similarity=0.070 Sum_probs=66.3
Q ss_pred hhhHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHH
Q 003433 623 RQEILCILGVFQKMHKLKIKPN------VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWV 695 (820)
Q Consensus 623 ~~~~~~Al~~~~~m~~~~~~Pd------~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 695 (820)
.|++.+|..-|.+.+. +-|. .+.|..-+.+..+.+.++.|+.-..++++++|.....+..-...| +...++
T Consensus 108 ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~e 185 (271)
T KOG4234|consen 108 NGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYE 185 (271)
T ss_pred cccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHH
Confidence 4578888888888876 3332 344666677888999999999999999999986655544433344 356899
Q ss_pred HHHHHHHHHhhcCCCc
Q 003433 696 QALSLFDEVKLMDSST 711 (820)
Q Consensus 696 ~A~~~~~~~~~~~~~~ 711 (820)
+|+.-|+++++.+|..
T Consensus 186 ealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 186 EALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHHHHHHHhCcch
Confidence 9999999999999954
No 311
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.73 E-value=0.95 Score=28.67 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhcCchHHHHHHHHHhhhhh
Q 003433 715 FYNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (820)
Q Consensus 715 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (820)
.|..+|.+|...|++++|...++++.+..
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 47788888888888888888888776543
No 312
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.30 E-value=0.57 Score=29.91 Aligned_cols=22 Identities=9% Similarity=0.155 Sum_probs=10.5
Q ss_pred ChhHHHHHHHHHHHhcCChHHH
Q 003433 191 DQGKLASAMISILGRLGKVDLA 212 (820)
Q Consensus 191 ~~~~~~~~l~~~~~~~g~~~~A 212 (820)
.+..+|..++.+|...|++++|
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhh
Confidence 3334444455555555555444
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.17 E-value=0.87 Score=30.41 Aligned_cols=29 Identities=17% Similarity=0.092 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhhcCchHHHHHHHHHhhhh
Q 003433 714 AFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (820)
Q Consensus 714 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (820)
..++.|+.+|...|++++|..+++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45899999999999999999999887543
No 314
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.14 E-value=6.7 Score=36.75 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=24.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003433 372 YSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD--RVSYNTVLSIYAKLGRFEEALLVCKE 429 (820)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d--~~~~~~li~~~~~~g~~~~A~~~~~~ 429 (820)
+..+.+.|++.|+.++|++.|.++.+....+. ...+-.+|....-.+++..+.....+
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~k 98 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEK 98 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34444444455555555555544444322221 12233444444444444444444433
No 315
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.08 E-value=4.8 Score=36.41 Aligned_cols=83 Identities=20% Similarity=0.179 Sum_probs=56.3
Q ss_pred HHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHH-hccccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchH-
Q 003433 653 NACSRCNSFEDASMLLEELRLFDNQVYGVAHGLL-MGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKR- 730 (820)
Q Consensus 653 ~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~- 730 (820)
+.-.+.++.+++..+++.+....|....+...-. .....|+|.+|+.+++.+.+..|.. +..-..++.+|...|+.+
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~-p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF-PYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-hHHHHHHHHHHHHcCChHH
Confidence 3345678999999999999888887655422211 2236789999999999987777643 444566777777777643
Q ss_pred --HHHHHH
Q 003433 731 --GAQLVV 736 (820)
Q Consensus 731 --~A~~~~ 736 (820)
.|.+++
T Consensus 97 r~~A~evl 104 (160)
T PF09613_consen 97 RRYADEVL 104 (160)
T ss_pred HHHHHHHH
Confidence 444443
No 316
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=87.95 E-value=8.2 Score=38.68 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=10.4
Q ss_pred cCCCHHHHHHHHHHHHH
Q 003433 168 NRGEWSKAIQCFAFAVK 184 (820)
Q Consensus 168 ~~g~~~~A~~~~~~~~~ 184 (820)
..|++..|++.+-.+++
T Consensus 385 SaGDy~~AiETllTAI~ 401 (498)
T KOG4849|consen 385 SAGDYKGAIETLLTAIQ 401 (498)
T ss_pred ccccchhHHHHHHHHHH
Confidence 35677777766655543
No 317
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.95 E-value=5.7 Score=39.73 Aligned_cols=101 Identities=15% Similarity=0.203 Sum_probs=71.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCC--CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCC
Q 003433 223 GYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYN---LKP--NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQP 297 (820)
Q Consensus 223 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p--~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p 297 (820)
|.+..+.+-..++..-....++++++.++-+++... ..| ..++| +..+.+- +.++++.++..=++.|+-|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~---irlllky--~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTW---IRLLLKY--DPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHH---HHHHHcc--ChHHHHHHHhCcchhcccc
Confidence 344455555666666666778888888887776431 122 23333 3333333 5788888888888899999
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 003433 298 DRITFNSLLAVCSRGGLWEAARNLFNEMVHR 328 (820)
Q Consensus 298 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 328 (820)
|..+++.+|+.+.+.+++.+|.++.-.|+..
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999998888887777654
No 318
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.89 E-value=9.9 Score=41.61 Aligned_cols=150 Identities=17% Similarity=0.209 Sum_probs=95.4
Q ss_pred hcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003433 346 KGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALL 425 (820)
Q Consensus 346 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~ 425 (820)
-.|+++.|..++..+.+ ...+.++..+.+.|..++|+++- +|..-. .....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCch-------hhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHH
Confidence 34666666665555442 23455666677777777776542 222211 123346788888877
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003433 426 VCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL 505 (820)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 505 (820)
+..+. .+..-|..|.++..+.|++..|.+.|.+... |..|+-.|...|+-+....+-....+.|.
T Consensus 659 la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 66554 3567788888888888888888888887653 34566677777777766666666666553
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003433 506 KADVVLYSALIDALCKNGLVESAVSLLDEM 535 (820)
Q Consensus 506 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 535 (820)
. |. -.-+|...|+++++.+++.+-
T Consensus 724 ~-N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 N-NL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred c-ch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 2 22 233566778888887776554
No 319
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.48 E-value=1.1 Score=28.39 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhcCchHHHHHHHHHhhhhh
Q 003433 715 FYNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (820)
Q Consensus 715 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (820)
+|..++.+|...|++++|.+.++++.+..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 58899999999999999999999887653
No 320
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.47 E-value=5.5 Score=37.29 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=36.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003433 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETAL 220 (820)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 220 (820)
.+..+...|.+.|+.++|++.|.++.............+-.+++.....|++..+.....++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345566666666666666666666655432222223344556666666666666666655553
No 321
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.37 E-value=17 Score=32.37 Aligned_cols=92 Identities=11% Similarity=-0.069 Sum_probs=50.0
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHH
Q 003433 205 RLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVV 284 (820)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~ 284 (820)
..++++++..+++.+.-..+. ....-..-+..+...|++++|+.+|+++.+.+. ....-..|+..|.... .-..-.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~--~~p~~kAL~A~CL~al-~Dp~Wr 97 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSAG--APPYGKALLALCLNAK-GDAEWH 97 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccCC--CchHHHHHHHHHHHhc-CChHHH
Confidence 467888888888877654322 233333344556778888888888888876542 2222233444443332 223334
Q ss_pred HHHHHHHHCCCCCCHH
Q 003433 285 EIFDDMLRNGVQPDRI 300 (820)
Q Consensus 285 ~~~~~m~~~g~~p~~~ 300 (820)
..-++++..|-.++..
T Consensus 98 ~~A~~~le~~~~~~a~ 113 (153)
T TIGR02561 98 VHADEVLARDADADAV 113 (153)
T ss_pred HHHHHHHHhCCCHhHH
Confidence 4444555554444433
No 322
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.28 E-value=0.83 Score=28.91 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=24.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCC
Q 003433 647 TFSAILNACSRCNSFEDASMLLEELRLFDN 676 (820)
Q Consensus 647 ~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~ 676 (820)
+|..++..|...|++++|.+.|++.++.+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 567788888889999999999988887665
No 323
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.04 E-value=17 Score=38.78 Aligned_cols=106 Identities=13% Similarity=0.110 Sum_probs=66.9
Q ss_pred HHHhcCCHHHHHHHHHHHH---HCC--CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCC----
Q 003433 448 GYGKQGKYDEVRRMFEQMK---ADC--VSPN---LLTYSTLIDVYSKGGLYKEAMQIFREFKQ-------AGLKAD---- 508 (820)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~---~~~--~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~p~---- 508 (820)
.+.-.|++.+|.+++...- +.| +.|. -..||.|...+.+.|.+..+..+|.+.++ .|++|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3445677777777665431 111 1111 22346666666666776666666666553 344332
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 003433 509 -------VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFG 555 (820)
Q Consensus 509 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 555 (820)
..+|| ..-.|...|+.-.|.+.|.+.... +.-++..|..|..+|.
T Consensus 329 ls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 329 LSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred hhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 23444 445678899999999999998875 5668889999999884
No 324
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.76 E-value=64 Score=36.90 Aligned_cols=171 Identities=12% Similarity=0.135 Sum_probs=102.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003433 163 LRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSG 242 (820)
Q Consensus 163 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 242 (820)
++-+.+.+.+++|+.+-+......... ....+....+..|...|++++|-.+.-.|... +..-|.--+..+...+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~-~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERF-VIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCcccc-chHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 555667889999998776554432211 13456778899999999999999998888653 7788888888888887
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 003433 243 YCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLF 322 (820)
Q Consensus 243 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 322 (820)
+..+...+ +......-+...|..+|..+.. . +. .-|.+.++. .. ...|..+--.-+- -
T Consensus 438 ~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~-~~----~~F~e~i~~-Wp--~~Lys~l~iisa~----------~ 495 (846)
T KOG2066|consen 438 QLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-S-DV----KGFLELIKE-WP--GHLYSVLTIISAT----------E 495 (846)
T ss_pred ccchhhcc---CCCCCcccCchHHHHHHHHHHH-H-HH----HHHHHHHHh-CC--hhhhhhhHHHhhc----------c
Confidence 76554333 3332222355678888877765 2 22 223333332 12 2233322111111 1
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchh
Q 003433 323 NEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPA 362 (820)
Q Consensus 323 ~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 362 (820)
.+..+.. + +...-..|+..|...+++..|++++-...+
T Consensus 496 ~q~~q~S-e-~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 496 PQIKQNS-E-STALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred hHHHhhc-c-chhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 1111110 1 122233388889999999999998887764
No 325
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.53 E-value=1.5 Score=44.11 Aligned_cols=93 Identities=11% Similarity=-0.039 Sum_probs=59.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCch
Q 003433 651 ILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQK 729 (820)
Q Consensus 651 ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 729 (820)
-++-|.++|+++||+..|......+|.+.....+-.++| +...+..|+.--+.++.+|-.. .-.|.--+..-...|+.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y-~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY-VKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH-HHHHHHHHHHHHHHhhH
Confidence 456789999999999999998888775543333333444 5556666666666666554422 22355555555666777
Q ss_pred HHHHHHHHHhhhhhh
Q 003433 730 RGAQLVVLEGKRRQV 744 (820)
Q Consensus 730 ~~A~~~~~~~~~~~~ 744 (820)
.||.+-.+.+++...
T Consensus 182 ~EAKkD~E~vL~LEP 196 (536)
T KOG4648|consen 182 MEAKKDCETVLALEP 196 (536)
T ss_pred HHHHHhHHHHHhhCc
Confidence 777776655554433
No 326
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.23 E-value=86 Score=37.84 Aligned_cols=133 Identities=18% Similarity=0.245 Sum_probs=82.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 408 NTVLSIYAKLGRFEEALLVCKEMESSGIRKDAV----TYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDV 483 (820)
Q Consensus 408 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 483 (820)
.-.++.--+.|.+.+|+.++ .++.. .|.+..+.+...+.+++|--+|+..-+. .--+.+
T Consensus 912 ~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a 974 (1265)
T KOG1920|consen 912 PECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKA 974 (1265)
T ss_pred HHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHH
Confidence 33444444566666666555 34444 4444555556677788887777764221 124567
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchh
Q 003433 484 YSKGGLYKEAMQIFREFKQAGLKADVV--LYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTE 561 (820)
Q Consensus 484 ~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 561 (820)
|..+|++.+|+.+..++... -|.. +-..|+.-+...++.-+|-++..+.... . ...+..+++...++
T Consensus 975 ~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-----~---~~av~ll~ka~~~~ 1043 (1265)
T KOG1920|consen 975 YKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-----P---EEAVALLCKAKEWE 1043 (1265)
T ss_pred HHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-----H---HHHHHHHhhHhHHH
Confidence 77888888888888777532 1322 2366788888999999998888877652 1 12234455556677
Q ss_pred hhHHhHH
Q 003433 562 CTVDDVE 568 (820)
Q Consensus 562 ~a~~~~~ 568 (820)
+|+.+..
T Consensus 1044 eAlrva~ 1050 (1265)
T KOG1920|consen 1044 EALRVAS 1050 (1265)
T ss_pred HHHHHHH
Confidence 7766543
No 327
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.13 E-value=39 Score=33.78 Aligned_cols=57 Identities=18% Similarity=0.153 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 479 TLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (820)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (820)
.....|..+|.+.+|.++.++.+..+. .+...|-.|+..+...|+--.|.+.++++.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344556666777777777666665542 355666666677777776666666666654
No 328
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.12 E-value=11 Score=37.90 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=62.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003433 434 GIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC---VSPN--LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD 508 (820)
Q Consensus 434 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 508 (820)
|.+....+...++..-....+++.++.++-+++..- ..++ ..+|-.++ ..-+.++++.++..=++.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccccc
Confidence 334444555555555556667777777766665431 1111 22222222 22356677777777777788888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 509 VVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (820)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (820)
..+++.+++.+.+.+++.+|..+...|+..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888888888877777766654
No 329
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.97 E-value=15 Score=40.36 Aligned_cols=99 Identities=17% Similarity=0.178 Sum_probs=44.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 003433 240 RSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAAR 319 (820)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 319 (820)
+.|+++.|.++..+.. +..-|..|.++....+ ++..|.+.|..... |..|+-.+...|+-+...
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~-~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAG-ELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcc-cchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 4455555555444332 3444555555555555 55555555544332 233444444444444444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q 003433 320 NLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEM 360 (820)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m 360 (820)
.+-....+.|. .|. -.-+|...|+++++.+++.+-
T Consensus 713 ~la~~~~~~g~-~N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 713 VLASLAKKQGK-NNL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHhhcc-cch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 44444444331 111 112334455555555555443
No 330
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.51 E-value=59 Score=35.26 Aligned_cols=179 Identities=16% Similarity=0.179 Sum_probs=116.5
Q ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003433 262 NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLL 341 (820)
Q Consensus 262 ~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 341 (820)
|.....+++..+.++. ...-+..+..+|+..| -+...|..++.+|... .-++-..+++++.+..+. |++.-..|+
T Consensus 65 ~d~~l~~~~~~f~~n~-k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNH-KNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccch-HHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 5566677888888877 6777788888888764 3677788888888877 567778888888886543 444445555
Q ss_pred HHHHhcCCHHHHHHHHHHchhCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 003433 342 DAICKGAQMDLAFEIMAEMPAKNIS-----PNVVTYSTMIDGYAKAGRLDDALNMFSEMKFL-GIGLDRVSYNTVLSIYA 415 (820)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~d~~~~~~li~~~~ 415 (820)
..|-+ ++.+.+...|.+...+-+. --...|..|+..- ..+.+..+.+..++... |...-.+.+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 55555 8888888888877654221 1122455544321 34556666666665442 43444556666667777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 416 KLGRFEEALLVCKEMESSGIRKDAVTYNALLGGY 449 (820)
Q Consensus 416 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 449 (820)
...++++|++++..+.+.+ ..|...-..++.-+
T Consensus 217 ~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 217 ENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred cccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 7888888888888777665 45555555555443
No 331
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.41 E-value=34 Score=34.18 Aligned_cols=55 Identities=13% Similarity=0.124 Sum_probs=27.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003433 445 LLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREF 500 (820)
Q Consensus 445 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 500 (820)
....|..+|.+.+|.++.++.+..+ +.+...+-.|+..+...|+--.|.+-++.+
T Consensus 285 va~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444555555555555555554432 334444455555555555544444444443
No 332
>PRK09687 putative lyase; Provisional
Probab=85.30 E-value=46 Score=33.88 Aligned_cols=15 Identities=7% Similarity=-0.110 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHhcC
Q 003433 228 VYAFSALISAYGRSG 242 (820)
Q Consensus 228 ~~~~~~li~~~~~~g 242 (820)
...-...+.++...|
T Consensus 68 ~~vR~~A~~aLg~lg 82 (280)
T PRK09687 68 PIERDIGADILSQLG 82 (280)
T ss_pred HHHHHHHHHHHHhcC
Confidence 333333444444444
No 333
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.30 E-value=1.3 Score=29.46 Aligned_cols=28 Identities=29% Similarity=0.302 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 003433 646 VTFSAILNACSRCNSFEDASMLLEELRL 673 (820)
Q Consensus 646 ~~~~~ll~a~~~~g~~~eA~~~~~~~~~ 673 (820)
.+++.|+.+|...|++++|..++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 5688999999999999999999998874
No 334
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.96 E-value=7.4 Score=39.20 Aligned_cols=49 Identities=14% Similarity=0.174 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 003433 227 TVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKG 276 (820)
Q Consensus 227 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 276 (820)
....+..++.+|+.-.-.++|+..+++..+.|+- +...|-.=++.+.+.
T Consensus 298 ~~~l~kq~l~~~A~d~aieD~i~~L~~~~r~G~i-~l~~yLr~VR~lsRe 346 (365)
T KOG2391|consen 298 TAPLYKQILECYALDLAIEDAIYSLGKSLRDGVI-DLDQYLRHVRLLSRE 346 (365)
T ss_pred cchHHHHHHHhhhhhhHHHHHHHHHHHHHhcCee-eHHHHHHHHHHHHHH
Confidence 4455666777777666667777777776666654 555554444444443
No 335
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.73 E-value=0.035 Score=50.29 Aligned_cols=54 Identities=13% Similarity=0.154 Sum_probs=23.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 003433 199 MISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFN 252 (820)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 252 (820)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444444444444444444443333334444444444444444444444433
No 336
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.52 E-value=92 Score=35.91 Aligned_cols=65 Identities=18% Similarity=0.167 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHCCC
Q 003433 229 YAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGV------DFKHVVEIFDDMLRNGV 295 (820)
Q Consensus 229 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~------~~~~A~~~~~~m~~~g~ 295 (820)
.+| .+|-.+.|+|++++|.++..+.... .......+...+..+..... .-++...-|.+..+...
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 345 4566677888888888888554432 23344555666666655420 12355556666665433
No 337
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.52 E-value=1.7 Score=25.68 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhcCchHHHHHHHH
Q 003433 715 FYNALTDMLWHFGQKRGAQLVVL 737 (820)
Q Consensus 715 ~~~~l~~~~~~~g~~~~A~~~~~ 737 (820)
....|++++...|++++|+.+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 36779999999999999998865
No 338
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=83.48 E-value=37 Score=31.27 Aligned_cols=33 Identities=12% Similarity=0.286 Sum_probs=18.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 003433 285 EIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEA 317 (820)
Q Consensus 285 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 317 (820)
++++.+.+.++.++...+..++..+.+.|++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 334444455566666666666666666665443
No 339
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.24 E-value=9.8 Score=36.87 Aligned_cols=17 Identities=59% Similarity=0.976 Sum_probs=7.3
Q ss_pred CCCCCCCCCCCCCCCCC
Q 003433 63 PKPAATSTTVAPNPKPF 79 (820)
Q Consensus 63 ~~p~~~~~~~~~~~~~~ 79 (820)
|.|..+++...+.+.++
T Consensus 251 P~p~ySst~~ap~ps~f 267 (338)
T KOG0917|consen 251 PAPVYSSTGVAPNPSTF 267 (338)
T ss_pred CCCCCCCCCCCCCCCCC
Confidence 34444444444444433
No 340
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=83.24 E-value=58 Score=33.37 Aligned_cols=152 Identities=13% Similarity=0.118 Sum_probs=86.6
Q ss_pred HcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--
Q 003433 167 GNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILG----RLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR-- 240 (820)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 240 (820)
...+++..|...+..+...+.. .....++..|. ...+..+|..+|..+...| .......|..+|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~~~-----~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~ 123 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELGDA-----AALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGR 123 (292)
T ss_pred cccccHHHHHHHHHHhhhcCCh-----HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCC
Confidence 3456777777777776653211 12333344333 3345778888888777654 34455556666665
Q ss_pred --cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC----CCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-
Q 003433 241 --SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKG----GVDF--KHVVEIFDDMLRNGVQPDRITFNSLLAVCSR- 311 (820)
Q Consensus 241 --~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----g~~~--~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~- 311 (820)
..+..+|..+|++..+.|..+...+...+...+... +... ..|...|.++...+ +......|...|..
T Consensus 124 gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G 200 (292)
T COG0790 124 GVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKG 200 (292)
T ss_pred CcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcC
Confidence 347788888888888776443222233333333332 1122 36777777777665 34444444444433
Q ss_pred ---CCCHHHHHHHHHHHHHCC
Q 003433 312 ---GGLWEAARNLFNEMVHRG 329 (820)
Q Consensus 312 ---~g~~~~A~~~~~~~~~~g 329 (820)
..+.++|...|...-+.|
T Consensus 201 ~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 201 LGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CCCCcCHHHHHHHHHHHHHCC
Confidence 236777777777777765
No 341
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.08 E-value=10 Score=33.74 Aligned_cols=72 Identities=15% Similarity=0.057 Sum_probs=47.7
Q ss_pred ccCCHHHHHHHHHHHhhcCCchhHHHHH-HHhccccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCch
Q 003433 657 RCNSFEDASMLLEELRLFDNQVYGVAHG-LLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQK 729 (820)
Q Consensus 657 ~~g~~~eA~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 729 (820)
..++.+++..+++.|....|+...+-.- -......|+|.+|..+++++.+..+.. +..-..++.++.-.|+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~-p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP-PYGKALLALCLNAKGDA 94 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc-hHHHHHHHHHHHhcCCh
Confidence 4788899999999888777765543211 111235788888888888888776633 33345666677666653
No 342
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.43 E-value=44 Score=31.40 Aligned_cols=92 Identities=15% Similarity=0.114 Sum_probs=56.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 003433 446 LGGYGKQGKYDEVRRMFEQMKADCVSPNL--LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNG 523 (820)
Q Consensus 446 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 523 (820)
...+...|++++|..-++..+.....-+. .+--.|.......|.+++|+..++...+.+. .......-.+.+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 45567777777777777766643111111 1122345566677788888887777665432 2233344466777888
Q ss_pred CHHHHHHHHHHHHHCC
Q 003433 524 LVESAVSLLDEMTKEG 539 (820)
Q Consensus 524 ~~~~A~~~~~~m~~~g 539 (820)
+-++|..-|++.+..+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 8888888888877754
No 343
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.56 E-value=42 Score=31.81 Aligned_cols=73 Identities=10% Similarity=-0.046 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003433 281 KHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHR---GIDQDIFTYNTLLDAICKGAQMDLAF 354 (820)
Q Consensus 281 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---g~~~~~~~~~~ll~~~~~~g~~~~A~ 354 (820)
+.|.+.|-++...+.--+......|...|. ..+.+++++++.++++. +-.+|+..+.+|++.|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 566666666665554434444444444333 55666666666666553 22455666666666666666666553
No 344
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=80.78 E-value=1.2e+02 Score=35.45 Aligned_cols=89 Identities=12% Similarity=0.131 Sum_probs=45.8
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHH-cCCCCHHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 003433 239 GRSGYCQEAISVFNSMKRYNLKPNL-------VTYNAVIDACG-KGGVDFKHVVEIFDDMLRN----GVQPDRITFNSLL 306 (820)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~ll~~~~-~~g~~~~~A~~~~~~m~~~----g~~p~~~~~~~ll 306 (820)
....++++|..++.++...-..|+. ..|+.+-.... ..| +++.|.++.+..... -..+....+.++.
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~-~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRG-DPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3456677777766665432111111 13343333322 233 666666666665542 1222344455555
Q ss_pred HHHHhCCCHHHHHHHHHHHHHC
Q 003433 307 AVCSRGGLWEAARNLFNEMVHR 328 (820)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~~~~~ 328 (820)
.+..-.|++++|..+..+..+.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHH
Confidence 6666667777777666655543
No 345
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.21 E-value=3.2 Score=25.79 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=23.1
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHhhhh
Q 003433 716 YNALTDMLWHFGQKRGAQLVVLEGKRR 742 (820)
Q Consensus 716 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (820)
+..++++|.+.|++++|.+++++..++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 567899999999999999999877654
No 346
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=78.98 E-value=72 Score=31.76 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=14.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q 003433 408 NTVLSIYAKLGRFEEALLVCKE 429 (820)
Q Consensus 408 ~~li~~~~~~g~~~~A~~~~~~ 429 (820)
..++..+.+.|.+.+|+.+...
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ 150 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINP 150 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHH
Confidence 4456677777777777765543
No 347
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=77.57 E-value=88 Score=31.99 Aligned_cols=85 Identities=15% Similarity=0.107 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--------
Q 003433 456 DEVRRMFEQMKADCVSPNLLTYSTLIDVYSK----GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNG-------- 523 (820)
Q Consensus 456 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-------- 523 (820)
..|...|.++-..+ +......|..+|.. ..+..+|...|+...+.|. ......+. .+...|
T Consensus 172 ~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 172 KKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred HhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhh
Confidence 35666666666554 44444445555543 2366777777777776653 22222222 444444
Q ss_pred -------CHHHHHHHHHHHHHCCCCCCHHHH
Q 003433 524 -------LVESAVSLLDEMTKEGIRPNVVTY 547 (820)
Q Consensus 524 -------~~~~A~~~~~~m~~~g~~p~~~~~ 547 (820)
+...|...+......+........
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 275 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGFDNACEAL 275 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCChhHHHHH
Confidence 556666666666665544333333
No 348
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=76.87 E-value=1.6e+02 Score=34.57 Aligned_cols=315 Identities=11% Similarity=0.081 Sum_probs=162.9
Q ss_pred hHHHHHHHHHHhCCC-------CCCHHHHHHHHHHHHcCCCCH---HHHHHHHHHH----HHCCCCCCHHHHHHHHHHHH
Q 003433 245 QEAISVFNSMKRYNL-------KPNLVTYNAVIDACGKGGVDF---KHVVEIFDDM----LRNGVQPDRITFNSLLAVCS 310 (820)
Q Consensus 245 ~~A~~~~~~m~~~~~-------~p~~~~~~~ll~~~~~~g~~~---~~A~~~~~~m----~~~g~~p~~~~~~~ll~~~~ 310 (820)
++...+++++...|+ .++-+.|..++.-+.+...+. ....++...+ ...|.. + --|.-..
T Consensus 298 ~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~-~-----eAI~hAl 371 (894)
T COG2909 298 ENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGLP-S-----EAIDHAL 371 (894)
T ss_pred CcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCCh-H-----HHHHHHH
Confidence 456677777777664 234456666666665433111 2222222222 223322 1 1233345
Q ss_pred hCCCHHHHHHHHHHHHHC---------------CCCCCHHHH------HHHHHHHHhcCCHHHHHHHHHHchhCCCCCCH
Q 003433 311 RGGLWEAARNLFNEMVHR---------------GIDQDIFTY------NTLLDAICKGAQMDLAFEIMAEMPAKNISPNV 369 (820)
Q Consensus 311 ~~g~~~~A~~~~~~~~~~---------------g~~~~~~~~------~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 369 (820)
..|+++.|..++++.-.. ++ |+.... -.-+.......++++|..++.++...-..|+.
T Consensus 372 aA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~l-P~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~ 450 (894)
T COG2909 372 AAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKAL-PAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMH 450 (894)
T ss_pred hCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhC-CHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcc
Confidence 667777777776655111 11 111111 11122335578899999888876543222221
Q ss_pred -------HHHHHHHH-HHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003433 370 -------VTYSTMID-GYAKAGRLDDALNMFSEMKFL----GIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK 437 (820)
Q Consensus 370 -------~~~~~li~-~~~~~g~~~~A~~~~~~m~~~----~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 437 (820)
..|+.|-. .....|++++|.++-+..... -.....+.+..+..+..-.|++++|..+..+..+..-.-
T Consensus 451 ~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~ 530 (894)
T COG2909 451 SRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH 530 (894)
T ss_pred cchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc
Confidence 23444432 234578899999988876653 223455677788888888999999999887765432122
Q ss_pred CHHH---HHHH--HHHHHhcCC--HHHHHHHHHHHHHCC---CC---CCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC
Q 003433 438 DAVT---YNAL--LGGYGKQGK--YDEVRRMFEQMKADC---VS---PNLLTYSTLIDVYSKG-GLYKEAMQIFREFKQA 503 (820)
Q Consensus 438 ~~~~---~~~l--i~~~~~~g~--~~~A~~~~~~m~~~~---~~---p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~ 503 (820)
+... |..+ ...+...|+ ..+....|....... .. +-.-++..+..++.+. +...+|..-+.-....
T Consensus 531 ~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~ 610 (894)
T COG2909 531 DVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVY 610 (894)
T ss_pred ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhc
Confidence 3332 3322 234556673 333333444433221 11 1223444555555541 2222333333332222
Q ss_pred CCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHH--hhcCchhhhHHh
Q 003433 504 GLKADVVLY--SALIDALCKNGLVESAVSLLDEMTKEGIR----PNVVTYNSIIDAF--GRSATTECTVDD 566 (820)
Q Consensus 504 ~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~ll~~~--~~~g~~~~a~~~ 566 (820)
...+-...+ ..|+..+...|+.++|...+.++...... ++..+-...+... ...|+.+++...
T Consensus 611 ~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~ 681 (894)
T COG2909 611 TPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEW 681 (894)
T ss_pred ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHH
Confidence 222222222 36778888999999999999998764322 3333333344432 456777766554
No 349
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.17 E-value=29 Score=32.84 Aligned_cols=73 Identities=16% Similarity=0.071 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhhcCchhhh
Q 003433 490 YKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE---GIRPNVVTYNSIIDAFGRSATTECT 563 (820)
Q Consensus 490 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~a 563 (820)
-++|.+.|-.+...+.--++.....|...|. ..+.++|+.++.++++. +-.+|...+.+|+..+.+.|++++|
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3566666666665544435555554544444 55667777777776653 3356677777777777777777665
No 350
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=75.81 E-value=25 Score=37.39 Aligned_cols=7 Identities=14% Similarity=0.226 Sum_probs=3.1
Q ss_pred HHHHHHc
Q 003433 162 LLRELGN 168 (820)
Q Consensus 162 l~~~~~~ 168 (820)
++.+|+.
T Consensus 562 vle~YCt 568 (661)
T KOG2070|consen 562 VLEAYCT 568 (661)
T ss_pred HHHHHhh
Confidence 4444443
No 351
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=74.74 E-value=9.3 Score=36.80 Aligned_cols=78 Identities=9% Similarity=0.057 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhc-cccchHHHHHHHHH
Q 003433 625 EILCILGVFQKMHKLKIKPNVVT-FSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMG-YRDNIWVQALSLFD 702 (820)
Q Consensus 625 ~~~~Al~~~~~m~~~~~~Pd~~~-~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~ 702 (820)
++.+|+..+.+.+. +.|+..+ |..=+-.+.+..+++.+..--..+++++|+..-..+.+... .....+++|+..+.
T Consensus 25 ~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 25 RYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 45556655555544 5555544 33333334444555555444444444444433222222111 12334445555555
Q ss_pred HH
Q 003433 703 EV 704 (820)
Q Consensus 703 ~~ 704 (820)
++
T Consensus 103 ra 104 (284)
T KOG4642|consen 103 RA 104 (284)
T ss_pred HH
Confidence 44
No 352
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.67 E-value=3.8 Score=25.39 Aligned_cols=26 Identities=8% Similarity=0.107 Sum_probs=14.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhcC
Q 003433 650 AILNACSRCNSFEDASMLLEELRLFD 675 (820)
Q Consensus 650 ~ll~a~~~~g~~~eA~~~~~~~~~~~ 675 (820)
.++.++.+.|++++|.+.|++++...
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 34455555566666666666555433
No 353
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=74.00 E-value=22 Score=28.93 Aligned_cols=62 Identities=15% Similarity=0.092 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 490 YKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (820)
Q Consensus 490 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 552 (820)
.-++.+-++.+...++.|++....+-+.+|-+.+++.-|+++|+-.+.. +..+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 3455566666666667777777777777777777777777777766633 2223345555544
No 354
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.91 E-value=3.5 Score=41.79 Aligned_cols=88 Identities=10% Similarity=-0.067 Sum_probs=63.7
Q ss_pred ccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHH
Q 003433 657 RCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLV 735 (820)
Q Consensus 657 ~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 735 (820)
..|.+++|++.|...++++|....+...-...+ +...+..|+.-++.+++++|+.... |---+....-.|+|++|...
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~-ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKG-YKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccc-cchhhHHHHHhhchHHHHHH
Confidence 457899999999999988886543221111112 3456778999999999999966443 66667777778999999999
Q ss_pred HHHhhhhhhh
Q 003433 736 VLEGKRRQVW 745 (820)
Q Consensus 736 ~~~~~~~~~~ 745 (820)
+..+.+++..
T Consensus 205 l~~a~kld~d 214 (377)
T KOG1308|consen 205 LALACKLDYD 214 (377)
T ss_pred HHHHHhcccc
Confidence 8887766543
No 355
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=73.85 E-value=1.2e+02 Score=31.67 Aligned_cols=80 Identities=10% Similarity=0.060 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChhHHH
Q 003433 172 WSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR---SGYCQEAI 248 (820)
Q Consensus 172 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~ 248 (820)
.+.-+.+++++++.+ +.+..+...++..+.+..+.+...+.+++++.... .+...|...++.... .-.+++..
T Consensus 47 ~E~klsilerAL~~n---p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~-~~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 47 AERKLSILERALKHN---PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP-GSPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHhccCcHHHHH
Confidence 345566777777763 45556667777777777777777777777776532 266677766665443 22344555
Q ss_pred HHHHHHH
Q 003433 249 SVFNSMK 255 (820)
Q Consensus 249 ~~~~~m~ 255 (820)
.+|.+..
T Consensus 123 ~~y~~~l 129 (321)
T PF08424_consen 123 DVYEKCL 129 (321)
T ss_pred HHHHHHH
Confidence 5555443
No 356
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=73.56 E-value=33 Score=27.83 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=40.1
Q ss_pred HHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChH
Q 003433 142 LGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVD 210 (820)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 210 (820)
+..+...+..++.+.+.-..+...+...|++++|++.+-.+++.+.... +...-..|+.++.-.|.-+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~-~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE-DDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC-CCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc-ccHHHHHHHHHHHHcCCCC
Confidence 3444444555555566666677888888888888888888887754332 2345556666666655543
No 357
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.54 E-value=8.5 Score=29.95 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=30.6
Q ss_pred cCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHH
Q 003433 168 NRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNI 215 (820)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 215 (820)
+.++.++|+..+..+++....+++-..++..++.+++..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777766544444444566666777777776666554
No 358
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=73.39 E-value=91 Score=35.64 Aligned_cols=135 Identities=21% Similarity=0.231 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 403 DRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLID 482 (820)
Q Consensus 403 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 482 (820)
+......++..|.+.|..+.|.++.+.+-..- ....-|..-+..+.+.|+......+-..+.+.....+......+++
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~ 481 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLD 481 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--------------------------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHH
Confidence 44455667777777777777777776654321 1122344445555566665555554444443221111111111111
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 483 VYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDA--LCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAF 554 (820)
Q Consensus 483 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 554 (820)
...... + +.+...-|..+-+. ..+.|++.+|.+.+-.+++.++.|...-..-|.++.
T Consensus 482 ~i~~~~-----------~----~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~l 540 (566)
T PF07575_consen 482 NIGSPM-----------L----LSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDAL 540 (566)
T ss_dssp --------------------------------------------------------------------------
T ss_pred Hhcchh-----------h----hhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
Confidence 111110 0 01111111111111 134578888888888888777777766555555543
No 359
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.18 E-value=1.8e+02 Score=33.53 Aligned_cols=59 Identities=22% Similarity=0.226 Sum_probs=34.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHHHhC
Q 003433 198 AMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGY-------CQEAISVFNSMKRY 257 (820)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~ 257 (820)
.+|-.|.++|++++|.++..+..+. .......+...+..|+...+ -++...-|++..+.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 4566688999999999888544433 23334456667777766422 23455556655543
No 360
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.64 E-value=2.2e+02 Score=34.21 Aligned_cols=41 Identities=7% Similarity=0.092 Sum_probs=25.5
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003433 215 IFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMK 255 (820)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 255 (820)
+|+++.+..+.+...-...-|..+.+.+++++|..+...|.
T Consensus 984 L~~~L~~~~LSp~~~~~L~~la~~i~~~~y~~a~~i~~~ia 1024 (1049)
T KOG0307|consen 984 LFDKLRDGTLSPPITDGLHQLAQSIKNRDYSEALQIHAQIA 1024 (1049)
T ss_pred HHHHHhcCCcChHHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 44444444455555555555666677777777777777666
No 361
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=72.53 E-value=1.9e+02 Score=33.55 Aligned_cols=79 Identities=14% Similarity=-0.020 Sum_probs=51.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhhcCchhh
Q 003433 486 KGGLYKEAMQIFREFKQAGLKADVV-LYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV--TYNSIIDAFGRSATTEC 562 (820)
Q Consensus 486 ~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~ 562 (820)
.+++.+.++.+++.....|-- +.. .|...+..-...|+...+..+++.....-..|+.. ++..+..--...|.++.
T Consensus 474 l~~nmd~~R~iWn~imty~~~-~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~ 552 (881)
T KOG0128|consen 474 LLKNMDKAREIWNFIMTYGGG-SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLES 552 (881)
T ss_pred HhhchhhhhHhhhccccCCcc-hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHH
Confidence 467899999999988876533 444 66666666677788888888888887665555422 33333333344555555
Q ss_pred hHH
Q 003433 563 TVD 565 (820)
Q Consensus 563 a~~ 565 (820)
...
T Consensus 553 ~~~ 555 (881)
T KOG0128|consen 553 FDL 555 (881)
T ss_pred Hhh
Confidence 443
No 362
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=72.15 E-value=8.4 Score=42.88 Aligned_cols=63 Identities=22% Similarity=0.269 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCC---CCCCCCCCCCCCC
Q 003433 4 TPPHCSITATKPYQNHQYPHNHLKNNHHRQSHHPSSRPHWTSHKVSLTKP---PLSPSPRNAPKPA 66 (820)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---p~~p~p~~~~~p~ 66 (820)
+|||+++++....+....|..-+.....-+....++..+..+-+..++|| |+||||..++.-+
T Consensus 987 ~~~p~~~s~~~s~~~~~~p~s~p~~~~~~~~~~~~~~~~~~s~~q~~pP~~g~P~PpPp~~~~k~p 1052 (1106)
T KOG0162|consen 987 RPPPVSTSTTTSQQPSARPSSKPTVFTKVPDAGASGNGRKPSGPQRPPPPAGRPKPPPPAKPPKNP 1052 (1106)
T ss_pred CCCCCCcccccccccccCCCCCCccccccCcccCcccccCCCCCCCCCCCCCCCCccCCCCCCCCc
No 363
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=72.04 E-value=1.4e+02 Score=31.52 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKA---DVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 473 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
...+|..++..+.+.|+++.|...+..+...+... +....-.-+..+...|+..+|+..+++.++
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666666666777777766666665532111 223333344555666666666666666655
No 364
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=70.96 E-value=1.4e+02 Score=31.34 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=30.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003433 235 ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLR 292 (820)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~ 292 (820)
+.+.-+.|+++.-.++....... .++...|.++... ..+ +++++....+++..
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~-~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQG-DYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCc-cHHHHHHHHHHHHH
Confidence 45666778888755555544431 1344455544443 556 77777777776654
No 365
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=70.91 E-value=29 Score=28.28 Aligned_cols=43 Identities=12% Similarity=0.122 Sum_probs=20.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003433 424 LLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMK 466 (820)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 466 (820)
.+-++.+...++.|++.+..+.+.+|.+.+++..|.++|+-++
T Consensus 27 rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 27 RRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333334444444444444444555555555555555544443
No 366
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=70.72 E-value=7.1 Score=23.25 Aligned_cols=30 Identities=17% Similarity=0.198 Sum_probs=19.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCC
Q 003433 647 TFSAILNACSRCNSFEDASMLLEELRLFDN 676 (820)
Q Consensus 647 ~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~ 676 (820)
+|..++..+...|++++|...|...++.+|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 345666667777777777777776665444
No 367
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=70.58 E-value=6.1 Score=23.58 Aligned_cols=28 Identities=11% Similarity=-0.028 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhcCchHHHHHHHHHhhhh
Q 003433 715 FYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (820)
Q Consensus 715 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (820)
.|..++.+|...|++++|...+..+.+.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4788999999999999999998877543
No 368
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.39 E-value=29 Score=33.12 Aligned_cols=58 Identities=21% Similarity=0.187 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 479 TLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
..++.+.+.+.+.+|+...++-++.++. |..+-..++..||-.|++++|..-++-.-.
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 3344455556666666666655554432 445555566666666666666655554443
No 369
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=69.84 E-value=1.2e+02 Score=30.21 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=18.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHchhCCCCCCHHH
Q 003433 340 LLDAICKGAQMDLAFEIMAEMPAKNISPNVVT 371 (820)
Q Consensus 340 ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 371 (820)
+.+-..+.+++++|+.++.++...|+..|..+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~ 40 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKT 40 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh
Confidence 34445556666666666666666666555443
No 370
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=69.72 E-value=39 Score=32.75 Aligned_cols=93 Identities=15% Similarity=0.178 Sum_probs=55.3
Q ss_pred HHcCCCHHHHHHHHHHHHHccc----ccCChhHHHHHHHHHHHhcCChH-------HHHHHHHHHHHcCCC-----CCHH
Q 003433 166 LGNRGEWSKAIQCFAFAVKREE----RKNDQGKLASAMISILGRLGKVD-------LAKNIFETALNEGYG-----NTVY 229 (820)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~~~-----~~~~ 229 (820)
+.....+++|++.|.-++-... .+..-+.++..++-.|...|+-+ .|.+.|+++....-. .+..
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 5556678888887776654321 11122445566677777777733 455555555443211 1234
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003433 230 AFSALISAYGRSGYCQEAISVFNSMKRYN 258 (820)
Q Consensus 230 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 258 (820)
+...++..+.+.|+.++|.++|.++...+
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 44456667778888888888888887643
No 371
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.35 E-value=22 Score=33.90 Aligned_cols=75 Identities=16% Similarity=0.055 Sum_probs=41.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHH
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGY--GNTVYAFSALISAYG 239 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~ 239 (820)
.+..+.+.+++++|+...+.-++.. |.+...-..++..|+-.|++++|..-++.+-.... .+-+..|..+|++-.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkak---Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea 83 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAK---PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEA 83 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC---CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH
Confidence 3455566666666666666555543 33344555666667777777777666555544321 223455666665443
No 372
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.93 E-value=2.7e+02 Score=33.29 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=18.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003433 159 YTFLLRELGNRGEWSKAIQCFAFAVK 184 (820)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 184 (820)
|..|+..|...|+.++|++++.....
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 55566677777777777777766665
No 373
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.87 E-value=22 Score=27.71 Aligned_cols=44 Identities=9% Similarity=0.092 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHH
Q 003433 625 EILCILGVFQKMHKLKIKPN--VVTFSAILNACSRCNSFEDASMLL 668 (820)
Q Consensus 625 ~~~~Al~~~~~m~~~~~~Pd--~~~~~~ll~a~~~~g~~~eA~~~~ 668 (820)
+.++|+..+++.++.-.++. -.++..|+.||+..|++.+..++-
T Consensus 21 ~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 21 ETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred hHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56679999999887555443 345888999999999999887753
No 374
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=67.64 E-value=1.6e+02 Score=30.68 Aligned_cols=117 Identities=10% Similarity=0.010 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHH
Q 003433 456 DEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK---NGLVESAVSLL 532 (820)
Q Consensus 456 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~ 532 (820)
+.-+.++++.++.+ +.+...+..++..+.+..+.++..+.+++++..... +...|...++.... .-.+++...+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 33445555555542 334445555555566666666666666666655332 55566665554433 12344555554
Q ss_pred HHHHHC------CC------CCC--HHHHHHHHH---HHhhcCchhhhHHhHHHHhhhh
Q 003433 533 DEMTKE------GI------RPN--VVTYNSIID---AFGRSATTECTVDDVERDLGKQ 574 (820)
Q Consensus 533 ~~m~~~------g~------~p~--~~~~~~ll~---~~~~~g~~~~a~~~~~~~l~~~ 574 (820)
.+.+.. +. .++ ......++. -+.+.|..+.|+..++..++.+
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 444321 11 001 111112222 2356788888877777666654
No 375
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=67.62 E-value=1.5 Score=39.42 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=27.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003433 306 LAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMA 358 (820)
Q Consensus 306 l~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 358 (820)
+..+.+.+..+....+++.+...+...+....+.++..|++.++.++.+++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33444455555555555555554434445555666666666655555555554
No 376
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=67.38 E-value=39 Score=29.61 Aligned_cols=49 Identities=4% Similarity=-0.075 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHhh-cCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhh
Q 003433 693 IWVQALSLFDEVKL-MDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKR 741 (820)
Q Consensus 693 ~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 741 (820)
+..+.+.+++.+++ -.|+........|+-.+++.|+|+.++++.+...+
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 44455555555554 33333344444455555555566666555544433
No 377
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=66.94 E-value=22 Score=29.27 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 492 EAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (820)
Q Consensus 492 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 552 (820)
+..+-++.+...++.|++....+.+.+|-+.+++.-|+++|+-.+.. +.+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 45555666666667777777777777777777777777777776643 2222225555543
No 378
>PRK11619 lytic murein transglycosylase; Provisional
Probab=66.70 E-value=2.5e+02 Score=32.56 Aligned_cols=381 Identities=10% Similarity=0.008 Sum_probs=201.9
Q ss_pred hHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHH--HHHHH
Q 003433 141 SLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAK--NIFET 218 (820)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~--~~~~~ 218 (820)
.-..++......+.+.+.-...+.++...|+-++|.+....+-..+...+ .....++..+.+.|.+.... +=++.
T Consensus 114 ~w~~~~~~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p---~~cd~l~~~~~~~g~lt~~d~w~R~~~ 190 (644)
T PRK11619 114 DWRGLLAFSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLP---NACDKLFSVWQQSGKQDPLAYLERIRL 190 (644)
T ss_pred CHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC---hHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34455553323444555556688888889998888777777666553322 36677888888777654432 22333
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh---------CCCCCCHHHHH---HHHHHHHcCCCCHHHHHHH
Q 003433 219 ALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKR---------YNLKPNLVTYN---AVIDACGKGGVDFKHVVEI 286 (820)
Q Consensus 219 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~~~~p~~~~~~---~ll~~~~~~g~~~~~A~~~ 286 (820)
+...| +...-..|+..+. .......+.+..+.. ..+.++...-. ..+.-+.+. +.+.|..+
T Consensus 191 al~~~---~~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~--d~~~A~~~ 263 (644)
T PRK11619 191 AMKAG---NTGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQ--DAENARLM 263 (644)
T ss_pred HHHCC---CHHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHh--CHHHHHHH
Confidence 33322 2222222222220 000100011111100 01112321111 222223333 57899999
Q ss_pred HHHHHHCC-CCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhC
Q 003433 287 FDDMLRNG-VQPD--RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK 363 (820)
Q Consensus 287 ~~~m~~~g-~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 363 (820)
+....... ..+. ..++..+.......+...++...++...... .+.......+....+.++++.+...+..|...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~ 341 (644)
T PRK11619 264 IPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPME 341 (644)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHh
Confidence 98875432 2222 1233344333334333567777777655432 24444555566666899999999999998764
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHCCCCCCHHHH
Q 003433 364 NISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEA-LLVCKEMESSGIRKDAVTY 442 (820)
Q Consensus 364 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~ 442 (820)
.-. ...-.--+..++...|+.++|..+|+++... . +|-.++.+ .+.|..-.- ...... ....+..+. -
T Consensus 342 ~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~---~fYG~LAa-~~Lg~~~~~~~~~~~~-~~~~~~~~~--~ 410 (644)
T PRK11619 342 AKE-KDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---R---GFYPMVAA-QRLGEEYPLKIDKAPK-PDSALTQGP--E 410 (644)
T ss_pred hcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---CcHHHHHH-HHcCCCCCCCCCCCCc-hhhhhccCh--H
Confidence 221 2333334667777799999999999997432 2 23333221 122321000 000000 000001111 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHH
Q 003433 443 NALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLK--ADVVLYSALIDALC 520 (820)
Q Consensus 443 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~ 520 (820)
..-+..+...|+..+|...+..+... .+......+...-.+.|..+.++.........+.. .=+..|...+..+.
T Consensus 411 ~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a 487 (644)
T PRK11619 411 MARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYT 487 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHH
Confidence 22345667889999999999988875 35555666666667888888887766543221100 00124777777777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003433 521 KNGLVESAVSLLDEMTKEGIRPNVVTY 547 (820)
Q Consensus 521 ~~g~~~~A~~~~~~m~~~g~~p~~~~~ 547 (820)
+.-.++.++-.---..++++.|+..+.
T Consensus 488 ~~~~v~~~lv~ai~rqES~f~p~a~S~ 514 (644)
T PRK11619 488 SGKGIPQSYAMAIARQESAWNPKARSP 514 (644)
T ss_pred HHcCCCHHHHHHHHHHhcCCCCCCccC
Confidence 777777776544444577888887654
No 379
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=66.54 E-value=44 Score=33.25 Aligned_cols=88 Identities=11% Similarity=0.155 Sum_probs=58.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR- 240 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~- 240 (820)
=|.+++..++|++++...-+--+.....| .++...-|-.|.|.|++..+.++-..=+..--..+..-|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklP--pkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLP--PKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 58889999999887764433332222222 357777888899999998888877766553222233446666666654
Q ss_pred ----cCChhHHHHHH
Q 003433 241 ----SGYCQEAISVF 251 (820)
Q Consensus 241 ----~g~~~~A~~~~ 251 (820)
.|.+++|.++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 58888888877
No 380
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=66.14 E-value=1.9e+02 Score=30.95 Aligned_cols=301 Identities=16% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003433 232 SALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSR 311 (820)
Q Consensus 232 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 311 (820)
|-++.-|...|+..+|.+..+++.. +......+-+++...+ .-..|..+.-.+...+...+...-..+.+++.+
T Consensus 218 n~~l~eyv~~getrea~rciR~L~v-----sffhhe~vkralv~am-e~~~ae~l~l~llke~~e~glissSq~~kGfsr 291 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELGV-----SFFHHEGVKRALVDAM-EDALAEGLTLKLLKEGREEGLISSSQMGKGFSR 291 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhCC-----CchhhHHHHHHHHHHH-hhhhcccceeccchhhhhhcchhhhccccCchh
Q ss_pred CC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcC
Q 003433 312 GG--------LWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAG 383 (820)
Q Consensus 312 ~g--------~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 383 (820)
.+ +.-.|...|+.+.-+.+.-+-..-+.+-..-...|+.+. ++.|++ +...+|.-|...|
T Consensus 292 ~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk-----------~~~~IIqEYFlsg 359 (645)
T KOG0403|consen 292 KGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFKK-----------DLTPIIQEYFLSG 359 (645)
T ss_pred hccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHHH-----------hhHHHHHHHHhcC
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--------H
Q 003433 384 RLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGK--------Y 455 (820)
Q Consensus 384 ~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--------~ 455 (820)
+..+.++.++++-.-...|-...+..-+..=.+...-+.|-.++..+.-.- -+....-+.+...+-...+ .
T Consensus 360 Dt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~-fsteDv~~~F~mLLesaedtALD~p~a~ 438 (645)
T KOG0403|consen 360 DTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEV-FSTEDVEKGFDMLLESAEDTALDIPRAS 438 (645)
T ss_pred ChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhccc-CCHHHHHHHHHHHHhcchhhhccccccH
Q ss_pred HHHHHHHHHHHHCC--CCCCHHHH--------------------------------------------------HHHHHH
Q 003433 456 DEVRRMFEQMKADC--VSPNLLTY--------------------------------------------------STLIDV 483 (820)
Q Consensus 456 ~~A~~~~~~m~~~~--~~p~~~~~--------------------------------------------------~~li~~ 483 (820)
++.-.++.+..-.+ .+-|...+ ..|+.-
T Consensus 439 ~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeE 518 (645)
T KOG0403|consen 439 QELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEE 518 (645)
T ss_pred HHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHHH
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh
Q 003433 484 YSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR 556 (820)
Q Consensus 484 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 556 (820)
|...|++.+|.+..+++----+. ..+.+.+++.+.-+.|+-...+.++++.-+. ..+|-+.+-.+|.+
T Consensus 519 Y~~~GdisEA~~CikeLgmPfFh-HEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s----glIT~nQMtkGf~R 586 (645)
T KOG0403|consen 519 YELSGDISEACHCIKELGMPFFH-HEVVKKALVMVMEKKGDSTMILDLLKECFKS----GLITTNQMTKGFER 586 (645)
T ss_pred HHhccchHHHHHHHHHhCCCcch-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CceeHHHhhhhhhh
No 381
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=65.78 E-value=9.5 Score=22.40 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=9.2
Q ss_pred HHHHHHHhcCChHHHHHHH
Q 003433 198 AMISILGRLGKVDLAKNIF 216 (820)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~ 216 (820)
.+...+...|++++|+.++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444445555555554444
No 382
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=65.70 E-value=74 Score=26.37 Aligned_cols=45 Identities=11% Similarity=0.095 Sum_probs=21.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003433 423 ALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKA 467 (820)
Q Consensus 423 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 467 (820)
..+-++.+...++.|++.+..+.+.+|.+.+++..|.++|+-++.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333444444444555555555555555555555555555555543
No 383
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=65.17 E-value=1.6e+02 Score=29.78 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=17.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 003433 372 YSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLG 418 (820)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g 418 (820)
.+.++..+.+.+.-+.-+++| +|+..+-......+...|
T Consensus 199 i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft~ag 237 (412)
T KOG2297|consen 199 INDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFTDAG 237 (412)
T ss_pred HHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHhHhh
Confidence 344555544444433333333 555554444444443333
No 384
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=64.56 E-value=1.6e+02 Score=29.54 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003433 369 VVTYSTMIDGYAKAGRLDDALNMFSEMKF----LGIGLDRVSYN-TVLSIYAKLGRFEEALLVCKEMESSGI 435 (820)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~d~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~ 435 (820)
...|..+...|++.++.+.+.+++.+..+ .|.+.|..... .|.-.|....-+++-++..+.|.++|.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGg 186 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGG 186 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 45566677777777777777766655433 34444433221 122233333345566666666666654
No 385
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=64.52 E-value=2e+02 Score=30.58 Aligned_cols=157 Identities=11% Similarity=0.158 Sum_probs=93.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHH------hcCCHHHHHHHHHHHHHCCCCCC
Q 003433 401 GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNA-LLGGYG------KQGKYDEVRRMFEQMKADCVSPN 473 (820)
Q Consensus 401 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~------~~g~~~~A~~~~~~m~~~~~~p~ 473 (820)
+--..++..+...+...|+.+.|.+++++.+- ++.. +...+. ..|.. . +.....-|
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf--------~~e~~~~~~F~~~~~~~~~g~~---r------L~~~~~eN 99 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALF--------AFERAFHPSFSPFRSNLTSGNC---R------LDYRRPEN 99 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHHHHHHHhhhhhcccccCcc---c------cCCccccc
Confidence 33455666666777777777777777766541 1110 001110 00000 0 00011224
Q ss_pred HHHHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHC------CCCCC
Q 003433 474 LLTYSTL---IDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALC-KNGLVESAVSLLDEMTKE------GIRPN 543 (820)
Q Consensus 474 ~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~------g~~p~ 543 (820)
...|.+| |..+.+.|.+..|.++.+-+...++.-|+.....+|+.|+ +.++++--+++++..... ..-|+
T Consensus 100 R~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn 179 (360)
T PF04910_consen 100 RQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN 179 (360)
T ss_pred hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc
Confidence 4445444 5677889999999999999998877667777777888775 778888888888876552 01222
Q ss_pred HHHHHHHHHHHhhcCch---------------hhhHHhHHHHhhhhhh
Q 003433 544 VVTYNSIIDAFGRSATT---------------ECTVDDVERDLGKQKE 576 (820)
Q Consensus 544 ~~~~~~ll~~~~~~g~~---------------~~a~~~~~~~l~~~~~ 576 (820)
..|+..+..+ ..++. ++|...+.+++..+|.
T Consensus 180 -~a~S~aLA~~-~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 180 -FAFSIALAYF-RLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred -HHHHHHHHHH-HhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 3444444333 34444 7777777777777664
No 386
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=63.72 E-value=13 Score=26.67 Aligned_cols=32 Identities=9% Similarity=0.048 Sum_probs=22.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhcCCchhHH
Q 003433 650 AILNACSRCNSFEDASMLLEELRLFDNQVYGV 681 (820)
Q Consensus 650 ~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~ 681 (820)
.+.-++.+.|++++|+++.+.+++.+|++..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 35557788888888888888888888776553
No 387
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=63.71 E-value=1.7e+02 Score=29.57 Aligned_cols=114 Identities=11% Similarity=0.148 Sum_probs=63.9
Q ss_pred HHHHHHHHHHchh-CCCCCCHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003433 350 MDLAFEIMAEMPA-KNISPNVVTYSTMIDGYAK-AG-RLDDALNMFSEMKFL-GIGLDRVSYNTVLSIYAKLGRFEEALL 425 (820)
Q Consensus 350 ~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~-~g-~~~~A~~~~~~m~~~-~~~~d~~~~~~li~~~~~~g~~~~A~~ 425 (820)
+.+|+++|+.... ..+--|..+...++..... .+ ....-.++.+-+... +-.++..+...++..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4555666652221 1122355555555554444 11 122222222223222 235667777777888888888888777
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003433 426 VCKEMESS-GIRKDAVTYNALLGGYGKQGKYDEVRRMFE 463 (820)
Q Consensus 426 ~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 463 (820)
+++..... +...|...|..+|....+.|+..-...+.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 77766543 445677788888888888888765444443
No 388
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=63.01 E-value=1.6e+02 Score=31.99 Aligned_cols=107 Identities=16% Similarity=0.129 Sum_probs=64.2
Q ss_pred HHHHcCCHHHHHHHHHHH---HHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCC----
Q 003433 413 IYAKLGRFEEALLVCKEM---ESSGIRKD-----AVTYNALLGGYGKQGKYDEVRRMFEQMKA-------DCVSPN---- 473 (820)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~---~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~p~---- 473 (820)
.+.-.|++.+|.+++... ...|...+ -..||.|.-.+.+.|.+..+..+|.+.++ .|+.|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 445567777777766433 11221111 22346666666667777766666666553 343332
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003433 474 -------LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK 521 (820)
Q Consensus 474 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 521 (820)
..+|| ..-.|...|+.-.|.+.|.+..+. +..++..|-.|..+|..
T Consensus 329 ls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 23344 344566788888888888887654 34588889888888764
No 389
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.00 E-value=1.5e+02 Score=28.80 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=12.9
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 003433 202 ILGRLGKVDLAKNIFETAL 220 (820)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~ 220 (820)
.++-.+++++|.++|.++.
T Consensus 23 lfgg~~k~eeAadl~~~Aa 41 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAA 41 (288)
T ss_pred ccCCCcchHHHHHHHHHHH
Confidence 4555667788887777664
No 390
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=62.33 E-value=17 Score=24.77 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=11.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 003433 515 LIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
|..+|...|+.+.|.+++++.+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555543
No 391
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=62.20 E-value=1.8e+02 Score=29.38 Aligned_cols=61 Identities=11% Similarity=0.231 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003433 297 PDRITFNSLLAVCSRGGLWEAARNLFNEMVHR-GIDQDIFTYNTLLDAICKGAQMDLAFEIM 357 (820)
Q Consensus 297 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 357 (820)
++..+...++..+++.+++..-.++++..... +...|...|...|+...+.|+..-...+.
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 34444444445555555555555544444333 33334444555555555555444443333
No 392
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=62.11 E-value=9.5 Score=40.73 Aligned_cols=87 Identities=15% Similarity=0.076 Sum_probs=58.9
Q ss_pred hhhHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHH
Q 003433 623 RQEILCILGVFQKMHKLKIKPNVVT-FSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSL 700 (820)
Q Consensus 623 ~~~~~~Al~~~~~m~~~~~~Pd~~~-~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~ 700 (820)
.++++.|+.++.+.++ ++||.+. |..=..++.+.+++.+|..=+.++.+.+|...-....-...+ ..+.+.+|...
T Consensus 17 ~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred cchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHH
Confidence 3578889999999887 7787555 444447888899999998888888877754221100000011 23466788888
Q ss_pred HHHHhhcCCCc
Q 003433 701 FDEVKLMDSST 711 (820)
Q Consensus 701 ~~~~~~~~~~~ 711 (820)
|++...+.|+.
T Consensus 95 l~~~~~l~Pnd 105 (476)
T KOG0376|consen 95 LEKVKKLAPND 105 (476)
T ss_pred HHHhhhcCcCc
Confidence 88888888854
No 393
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=61.89 E-value=2.4e+02 Score=32.35 Aligned_cols=44 Identities=9% Similarity=0.060 Sum_probs=29.0
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCchhHHHHHHH-hccccchHHHHHHHHHHHhhcCC
Q 003433 654 ACSRCNSFEDASMLLEELRLFDNQVYGVAHGLL-MGYRDNIWVQALSLFDEVKLMDS 709 (820)
Q Consensus 654 a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~ 709 (820)
...+.|.+++-..+++-.. ++ .+.-.+++.+|.+..+.|.++.|
T Consensus 353 LlgrKG~leklq~YWdV~~------------y~~asVLAnd~~kaiqAae~mfKLk~ 397 (1226)
T KOG4279|consen 353 LLGRKGALEKLQEYWDVAT------------YFEASVLANDYQKAIQAAEMMFKLKP 397 (1226)
T ss_pred HhhccchHHHHHHHHhHHH------------hhhhhhhccCHHHHHHHHHHHhccCC
Confidence 3467777777666655432 11 11135678889999999999888
No 394
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=61.28 E-value=1.5e+02 Score=28.93 Aligned_cols=84 Identities=18% Similarity=0.056 Sum_probs=46.7
Q ss_pred HHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCh
Q 003433 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT-VYAFSALISAYGRSGYC 244 (820)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~ 244 (820)
|....++..|+..|.+++..+ |.....|..-+.++.+..+++.+..=-..++.. .|| +.....+.........+
T Consensus 20 ~f~~k~y~~ai~~y~raI~~n---P~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICIN---PTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHhcC---CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 333456667777776666653 333345566666666666666665555555443 222 33444455555555666
Q ss_pred hHHHHHHHHH
Q 003433 245 QEAISVFNSM 254 (820)
Q Consensus 245 ~~A~~~~~~m 254 (820)
++|+..+.+.
T Consensus 95 ~eaI~~Lqra 104 (284)
T KOG4642|consen 95 DEAIKVLQRA 104 (284)
T ss_pred cHHHHHHHHH
Confidence 6666666555
No 395
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=61.19 E-value=1.7e+02 Score=28.82 Aligned_cols=76 Identities=9% Similarity=0.070 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHhccc-----cchHHHHHHHHHHHhh-----cCCCcchhH----HHHHHHHHhhc
Q 003433 661 FEDASMLLEELRLFDNQVYGVAHGLLMGYR-----DNIWVQALSLFDEVKL-----MDSSTASAF----YNALTDMLWHF 726 (820)
Q Consensus 661 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~~~~-----~~~~~~~~~----~~~l~~~~~~~ 726 (820)
-.++.-+|.+|. .+| +.++..+. ....++|...|+++.+ +.|.+ +.. +|.=+-.|...
T Consensus 111 ~~eskvfy~Kmk----gDy---yRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~-p~rLgl~LN~svF~yei~ 182 (236)
T PF00244_consen 111 SPESKVFYYKMK----GDY---YRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTH-PLRLGLALNYSVFYYEIL 182 (236)
T ss_dssp SHHHHHHHHHHH----HHH---HHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTS-HHHHHHHHHHHHHHHHTS
T ss_pred chhHHHHHHHHh----ccc---cccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCC-cHHHHHHHHHHHHHHHHc
Confidence 455666677776 222 23333221 1233456666666543 44533 332 22223345668
Q ss_pred CchHHHHHHHHHhhhhhh
Q 003433 727 GQKRGAQLVVLEGKRRQV 744 (820)
Q Consensus 727 g~~~~A~~~~~~~~~~~~ 744 (820)
|+.++|.++-+.+.+..+
T Consensus 183 ~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 183 NDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp S-HHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHH
Confidence 999999999877765544
No 396
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=61.02 E-value=45 Score=32.31 Aligned_cols=49 Identities=10% Similarity=0.094 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhcCCC-----cchhHHHHHHHHHhhcCchHHHHHHHHHhhhh
Q 003433 694 WVQALSLFDEVKLMDSS-----TASAFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (820)
Q Consensus 694 ~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (820)
+..|...|+++.+.+.. +.......+|.+..+.|++++|.+++......
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 45688888888765432 33566788999999999999999999876544
No 397
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=60.37 E-value=22 Score=38.11 Aligned_cols=106 Identities=15% Similarity=0.070 Sum_probs=70.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 241 (820)
-++.+...+.++.|+.++.++++.+ +..+..+..-..++.+.+++..|+.=+.++++..+. -...|.--..++.+.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ld---pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELD---PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMAL 85 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcC---CcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhH
Confidence 4455666788999999999998875 333445555557788888888888888888776421 233343344455556
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003433 242 GYCQEAISVFNSMKRYNLKPNLVTYNAVIDAC 273 (820)
Q Consensus 242 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 273 (820)
+++.+|+..|+.... +.|+..-...++.-|
T Consensus 86 ~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 667777777777665 567766666666555
No 398
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=59.54 E-value=1e+02 Score=25.51 Aligned_cols=53 Identities=9% Similarity=0.199 Sum_probs=28.8
Q ss_pred HHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003433 341 LDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLG 399 (820)
Q Consensus 341 l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 399 (820)
+..+...|++++|..+.+.+ ..||...|-+|-. .+.|..+++..-+.+|...|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 34455566666666665555 2456666655533 34555555555555555554
No 399
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=59.41 E-value=32 Score=34.44 Aligned_cols=57 Identities=12% Similarity=0.009 Sum_probs=44.7
Q ss_pred hccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcc
Q 003433 656 SRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTA 712 (820)
Q Consensus 656 ~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~ 712 (820)
.+.|+.++|..+|+-+++.+|.+..++..+..-. ..++..+|.++|-+++.++|.++
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 4679999999999999999998887765543222 24577789999999999999664
No 400
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=58.28 E-value=2.3e+02 Score=29.16 Aligned_cols=93 Identities=14% Similarity=0.155 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHch----hCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCHH----H
Q 003433 336 TYNTLLDAICKGAQMDLAFEIMAEMP----AKNISPNVVTYSTMIDG-YAKAGRLDDALNMFSEMKFLGIGLDRV----S 406 (820)
Q Consensus 336 ~~~~ll~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~d~~----~ 406 (820)
.+-....-||+.|+.+.|++.+.+.. ..|.+.|++.+..-+.. |....-+.+-++..+.+.+.|...+.. +
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 44455666777777777776665443 33555565555443332 333333455555555555555443322 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 003433 407 YNTVLSIYAKLGRFEEALLVCKEM 430 (820)
Q Consensus 407 ~~~li~~~~~~g~~~~A~~~~~~~ 430 (820)
|..+- +....++.+|-.+|-+.
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~ 207 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDS 207 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHH
Confidence 22221 22334555555555444
No 401
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=58.22 E-value=60 Score=35.76 Aligned_cols=86 Identities=20% Similarity=0.165 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 003433 169 RGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAI 248 (820)
Q Consensus 169 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 248 (820)
.|+...|..++..+....+.. .......|++.+.+.|...+|-.++.+.+... ....-++..+.++|.-..+++.|+
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~--~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQ--QDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHhccChhh--hcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 355555555555555433211 11233445555555555555655555555443 223445555556666666666666
Q ss_pred HHHHHHHhC
Q 003433 249 SVFNSMKRY 257 (820)
Q Consensus 249 ~~~~~m~~~ 257 (820)
+.|+...+.
T Consensus 697 ~~~~~a~~~ 705 (886)
T KOG4507|consen 697 EAFRQALKL 705 (886)
T ss_pred HHHHHHHhc
Confidence 666555543
No 402
>PHA02875 ankyrin repeat protein; Provisional
Probab=58.00 E-value=2.2e+02 Score=30.91 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=6.8
Q ss_pred HHHHHHHCCCCCCH
Q 003433 496 IFREFKQAGLKADV 509 (820)
Q Consensus 496 ~~~~m~~~~~~p~~ 509 (820)
+.+.+.+.|..++.
T Consensus 217 iv~~Ll~~gad~n~ 230 (413)
T PHA02875 217 IVRLFIKRGADCNI 230 (413)
T ss_pred HHHHHHHCCcCcch
Confidence 34444555655443
No 403
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=57.97 E-value=2.1e+02 Score=28.74 Aligned_cols=159 Identities=19% Similarity=0.151 Sum_probs=0.0
Q ss_pred HhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCH
Q 003433 345 CKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFL----GIGLDRVSYNTVLSIYAKLGRF 420 (820)
Q Consensus 345 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~d~~~~~~li~~~~~~g~~ 420 (820)
.+.+++++|++++..--.. +.+.|+...|.++-.-+++. +.+.|......++..+...+.-
T Consensus 1 v~~kky~eAidLL~~Ga~~---------------ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~ 65 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSGALI---------------LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPE 65 (260)
T ss_dssp HHTT-HHHHHHHHHHHHHH---------------HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT
T ss_pred CccccHHHHHHHHHHHHHH---------------HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCC
Q ss_pred H-HHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003433 421 E-EALLVCKEMES-----SGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAM 494 (820)
Q Consensus 421 ~-~A~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 494 (820)
+ +-.++.+++++ ..-.-|+.....+...|.+.|++.+|+..|-.-... +...+..++.-....|...++
T Consensus 66 ~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~----~~~~~~~ll~~~~~~~~~~e~- 140 (260)
T PF04190_consen 66 EPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDP----SAFAYVMLLEEWSTKGYPSEA- 140 (260)
T ss_dssp -TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HH----HHHHHHHHHHHHHHHTSS--H-
T ss_pred cchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCCh----hHHHHHHHHHHHHHhcCCcch-
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 495 QIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 495 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
.......+-.|.-.|+...|...+....+
T Consensus 141 --------------dlfi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 141 --------------DLFIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp --------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred --------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHH
No 404
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=56.97 E-value=24 Score=24.12 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=9.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 003433 446 LGGYGKQGKYDEVRRMFEQMK 466 (820)
Q Consensus 446 i~~~~~~g~~~~A~~~~~~m~ 466 (820)
..+|...|+.+.|.++++++.
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 334444444444444444444
No 405
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=55.18 E-value=3.7e+02 Score=30.73 Aligned_cols=29 Identities=10% Similarity=0.020 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003433 624 QEILCILGVFQKMHKLKIKPNVVTFSAIL 652 (820)
Q Consensus 624 ~~~~~Al~~~~~m~~~~~~Pd~~~~~~ll 652 (820)
++..+|.+.+-.++..++-|...-...|.
T Consensus 509 ~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~ 537 (566)
T PF07575_consen 509 GDFREAASLLVSLLKSPIAPKSFWPLLLC 537 (566)
T ss_dssp -----------------------------
T ss_pred hhHHHHHHHHHHHHCCCCCcHHHHHHHHH
Confidence 35556776666666666666655443333
No 406
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=54.93 E-value=8.2 Score=45.16 Aligned_cols=6 Identities=17% Similarity=0.456 Sum_probs=2.2
Q ss_pred HHHHHh
Q 003433 700 LFDEVK 705 (820)
Q Consensus 700 ~~~~~~ 705 (820)
+.+.-+
T Consensus 1137 L~~~yl 1142 (2365)
T COG5178 1137 LLEDYL 1142 (2365)
T ss_pred HHHHHH
Confidence 333333
No 407
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=54.84 E-value=2e+02 Score=29.76 Aligned_cols=81 Identities=10% Similarity=0.146 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHH
Q 003433 195 LASAMISILGRLGKVDLAKNIFETALNE---GYGNTVYAF--SALISAYGRSGYCQEAISVFNSMKR-----YNLKPNLV 264 (820)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~ 264 (820)
+...++...-+.++.++|.+.++++.+. .-.|+.+.| ..+++.+...|+..++.+++++..+ .++.+++.
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 3344445555556777777777777542 223344443 4455666677888888887777765 56666554
Q ss_pred H-HHHHHHHHHc
Q 003433 265 T-YNAVIDACGK 275 (820)
Q Consensus 265 ~-~~~ll~~~~~ 275 (820)
+ |+.+-.-|.+
T Consensus 157 ~~fY~lssqYyk 168 (380)
T KOG2908|consen 157 SSFYSLSSQYYK 168 (380)
T ss_pred hhHHHHHHHHHH
Confidence 3 5555555544
No 408
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=54.78 E-value=43 Score=29.34 Aligned_cols=22 Identities=14% Similarity=0.212 Sum_probs=12.1
Q ss_pred ccchHHHHHHHHHHHhhcCCCc
Q 003433 690 RDNIWVQALSLFDEVKLMDSST 711 (820)
Q Consensus 690 ~~~~~~~A~~~~~~~~~~~~~~ 711 (820)
+-+++++++.+.+.+++.+|++
T Consensus 83 RlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 83 RLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred HHhhHHHHHHHHHHHHhhCCCc
Confidence 4455555555555555555533
No 409
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=54.35 E-value=6.8e+02 Score=33.49 Aligned_cols=150 Identities=9% Similarity=0.025 Sum_probs=83.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHc----hhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 339 TLLDAICKGAQMDLAFEIMAEM----PAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIY 414 (820)
Q Consensus 339 ~ll~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~ 414 (820)
.|..+-.+++.+..|+..++.- .+.. -...-|..+...|...+++|+...+...-.. +... ..-|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl-~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSL-YQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccH-HHHHHHH
Confidence 4445556677777777777772 2211 1223444555577777777777666653111 1122 2233445
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHH
Q 003433 415 AKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTL-IDVYSKGGLYKEA 493 (820)
Q Consensus 415 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~A 493 (820)
...|++..|...|+.+.+.+ ++...+++-++......|.++......+-.... ..+....++++ +.+-.+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 66778888888888887665 344666666666666667776666655544433 23334444443 2333555666655
Q ss_pred HHHHH
Q 003433 494 MQIFR 498 (820)
Q Consensus 494 ~~~~~ 498 (820)
.....
T Consensus 1538 e~~l~ 1542 (2382)
T KOG0890|consen 1538 ESYLS 1542 (2382)
T ss_pred hhhhh
Confidence 54443
No 410
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.15 E-value=9.6 Score=38.79 Aligned_cols=97 Identities=19% Similarity=0.106 Sum_probs=67.2
Q ss_pred HHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 003433 165 ELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYC 244 (820)
Q Consensus 165 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 244 (820)
.....|.+++|++.|..++..+ +....+|..-.+++.+.++...|++=++.++..+.. +..-|-.-..+..-.|++
T Consensus 123 eAln~G~~~~ai~~~t~ai~ln---p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELN---PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHhcCcchhhhhcccccccccC---CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhch
Confidence 3455788999999998888774 555567777778888888888888888887775432 233344444455566888
Q ss_pred hHHHHHHHHHHhCCCCCCHHH
Q 003433 245 QEAISVFNSMKRYNLKPNLVT 265 (820)
Q Consensus 245 ~~A~~~~~~m~~~~~~p~~~~ 265 (820)
++|...|....+.++.+.+..
T Consensus 199 e~aa~dl~~a~kld~dE~~~a 219 (377)
T KOG1308|consen 199 EEAAHDLALACKLDYDEANSA 219 (377)
T ss_pred HHHHHHHHHHHhccccHHHHH
Confidence 888888887777666544433
No 411
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.01 E-value=72 Score=35.59 Aligned_cols=87 Identities=13% Similarity=0.224 Sum_probs=42.1
Q ss_pred cCCCHHHHHHHHHHHHHcc---cccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 003433 168 NRGEWSKAIQCFAFAVKRE---ERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYC 244 (820)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 244 (820)
+..++..+++.|..-++.- .......+....|.-+|.+..++|.|.++++++.+.+. .++...-.+..+....|..
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~-~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR-QSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhcch
Confidence 3445555555555544321 11111233444555555555566666666666655432 1344444444455555555
Q ss_pred hHHHHHHHHHH
Q 003433 245 QEAISVFNSMK 255 (820)
Q Consensus 245 ~~A~~~~~~m~ 255 (820)
++|+.......
T Consensus 445 e~AL~~~~~~~ 455 (872)
T KOG4814|consen 445 EEALTCLQKIK 455 (872)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 412
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=53.71 E-value=1.2e+02 Score=24.60 Aligned_cols=55 Identities=15% Similarity=0.030 Sum_probs=32.0
Q ss_pred CChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCh
Q 003433 190 NDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGN-TVYAFSALISAYGRSGYC 244 (820)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~ 244 (820)
|.+......+...+...|++++|.+.+-.+++..... +...-..|+..+.-.|.-
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 4455566677777888888888887777777654332 334455555555555543
No 413
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=53.06 E-value=1.3e+02 Score=24.88 Aligned_cols=52 Identities=23% Similarity=0.313 Sum_probs=32.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003433 482 DVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEG 539 (820)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 539 (820)
..+...|++++|..+.+.+ ..||...|-+|.. .+.|..+++..-+.+|-.+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3455677777777766655 3577777766533 46666666666666666554
No 414
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=52.93 E-value=92 Score=34.42 Aligned_cols=151 Identities=13% Similarity=0.018 Sum_probs=96.2
Q ss_pred CCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHchhCCCCCCHHHH
Q 003433 296 QPDRITFNSLLAVCSRG--GLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICK-GAQMDLAFEIMAEMPAKNISPNVVTY 372 (820)
Q Consensus 296 ~p~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~ 372 (820)
.|+..+.-+++.-.... ..-+-+-.++..|.+- ..|--.+.| +...|-+ .|+...|...+.........-..+..
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~-~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINKP-NAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCC-CCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 34555555444333221 2234455555555432 222222223 3344443 68888888888776544332244556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003433 373 STMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYG 450 (820)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 450 (820)
..|...+.+.|...+|..++.+..... ....-++..+.++|....+++.|++.|++..+.. +.+.+.-+.|...-|
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 667777788888888999888877654 4455778888899999999999999999988776 566777777776655
No 415
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=52.30 E-value=1.7e+02 Score=29.43 Aligned_cols=54 Identities=15% Similarity=0.146 Sum_probs=23.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 376 IDGYAKAGRLDDALNMFSEMKFL--GIGLDRVSYNTVLSIYAKLGRFEEALLVCKEME 431 (820)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~m~~~--~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~ 431 (820)
|.+++..|++.+++...-+--+. .++| ...-.-|-.|.+.++...+.++-..-.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44455555555555443333221 1122 222222334555555555555544443
No 416
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=51.87 E-value=54 Score=34.72 Aligned_cols=6 Identities=33% Similarity=0.617 Sum_probs=2.3
Q ss_pred CCCCCC
Q 003433 1 MASTPP 6 (820)
Q Consensus 1 ~~~~~~ 6 (820)
|.|++|
T Consensus 1 ~~p~~~ 6 (353)
T PLN00034 1 MKPIQP 6 (353)
T ss_pred CCCCCC
Confidence 334333
No 417
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=51.60 E-value=64 Score=26.34 Aligned_cols=55 Identities=15% Similarity=0.220 Sum_probs=28.1
Q ss_pred HcCCCHHHHHHHHHHHHH----cccccC--ChhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003433 167 GNRGEWSKAIQCFAFAVK----REERKN--DQGKLASAMISILGRLGKVDLAKNIFETALN 221 (820)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~----~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 221 (820)
.+.|++.+|++.+.+... ...... ....+...++......|+.++|...++++++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456777777555444433 221110 0112333455556666777777666666654
No 418
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=49.95 E-value=41 Score=27.53 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=23.2
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHhhhhh
Q 003433 716 YNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (820)
Q Consensus 716 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (820)
.-.++.+....|++++|...++++.+..
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4557888999999999999999887653
No 419
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=49.51 E-value=92 Score=34.03 Aligned_cols=11 Identities=0% Similarity=-0.058 Sum_probs=4.3
Q ss_pred CChhHHHHHHH
Q 003433 242 GYCQEAISVFN 252 (820)
Q Consensus 242 g~~~~A~~~~~ 252 (820)
++|+-..-+++
T Consensus 376 ~n~~LvwGIiR 386 (582)
T PF03276_consen 376 QNFDLVWGIIR 386 (582)
T ss_pred CCcchhhhhhh
Confidence 34444333333
No 420
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=49.29 E-value=2.1e+02 Score=29.53 Aligned_cols=89 Identities=18% Similarity=0.234 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCHHHHH--HHHHHHHcCCCCHHHHHHHHHHHHH-----CCCCCCHH
Q 003433 231 FSALISAYGRSGYCQEAISVFNSMKRY---NLKPNLVTYN--AVIDACGKGGVDFKHVVEIFDDMLR-----NGVQPDRI 300 (820)
Q Consensus 231 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~--~ll~~~~~~g~~~~~A~~~~~~m~~-----~g~~p~~~ 300 (820)
...++...-+.++.++|++.++++.+. --.|+.+.|- .+...+...| +.+++.+++++... .|+.+++.
T Consensus 78 vei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~-DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 78 VEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEIN-DLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 334455556667899999999998642 2245666653 4556677888 99999999998887 67887665
Q ss_pred H-HHHHHHHHH-hCCCHHHHHH
Q 003433 301 T-FNSLLAVCS-RGGLWEAARN 320 (820)
Q Consensus 301 ~-~~~ll~~~~-~~g~~~~A~~ 320 (820)
+ |+.+-.-|. ..|++...-+
T Consensus 157 ~~fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 157 SSFYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred hhHHHHHHHHHHHHHhHHHHHH
Confidence 4 555555444 4566654433
No 421
>PHA02875 ankyrin repeat protein; Provisional
Probab=48.28 E-value=3.5e+02 Score=29.33 Aligned_cols=18 Identities=6% Similarity=-0.090 Sum_probs=8.6
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 003433 341 LDAICKGAQMDLAFEIMA 358 (820)
Q Consensus 341 l~~~~~~g~~~~A~~~~~ 358 (820)
+...+..|+.+-+..+++
T Consensus 139 Lh~A~~~~~~~~v~~Ll~ 156 (413)
T PHA02875 139 LHLAVMMGDIKGIELLID 156 (413)
T ss_pred HHHHHHcCCHHHHHHHHh
Confidence 344445566554444443
No 422
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=47.37 E-value=3.3e+02 Score=27.90 Aligned_cols=148 Identities=12% Similarity=0.123 Sum_probs=71.3
Q ss_pred HcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 003433 167 GNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQE 246 (820)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 246 (820)
-+.++..+-++.-..++..+ +.-..+|..+.. -..--+.+|.++|..+++.+- ..|+. -+.....|.
T Consensus 195 WRERnp~~RI~~A~~ALeIN---~eCA~AyvLLAE--EEa~Ti~~AE~l~k~ALka~e----~~yr~-sqq~qh~~~--- 261 (556)
T KOG3807|consen 195 WRERNPPARIKAAYQALEIN---NECATAYVLLAE--EEATTIVDAERLFKQALKAGE----TIYRQ-SQQCQHQSP--- 261 (556)
T ss_pred HHhcCcHHHHHHHHHHHhcC---chhhhHHHhhhh--hhhhhHHHHHHHHHHHHHHHH----HHHhh-HHHHhhhcc---
Confidence 33444444444444455543 222223332222 233445677777777776531 12221 111111222
Q ss_pred HHHHHHHHHhCCCCCCHHHH--HHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHH
Q 003433 247 AISVFNSMKRYNLKPNLVTY--NAVIDACGKGGVDFKHVVEIFDDMLRNGVQPD-RITFNSLLAVCSRGGLWEAARNLFN 323 (820)
Q Consensus 247 A~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~ 323 (820)
..+.+.+++ -|+.+| ..|.-+..+.| +..+|.+.|+++.+.-.-.+ ......|+.++....-+.+...++.
T Consensus 262 ---~~da~~rRD--tnvl~YIKRRLAMCARklG-rlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 262 ---QHEAQLRRD--TNVLVYIKRRLAMCARKLG-RLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred ---chhhhhhcc--cchhhHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333322 244444 23444445666 78888888877766521101 1223457777777777777777777
Q ss_pred HHHHCCCCCC
Q 003433 324 EMVHRGIDQD 333 (820)
Q Consensus 324 ~~~~~g~~~~ 333 (820)
+..+...+.+
T Consensus 336 kYDdislPkS 345 (556)
T KOG3807|consen 336 KYDDISLPKS 345 (556)
T ss_pred hhccccCcch
Confidence 7666544333
No 423
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=46.90 E-value=93 Score=26.30 Aligned_cols=26 Identities=23% Similarity=0.439 Sum_probs=17.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 372 YSTMIDGYAKAGRLDDALNMFSEMKF 397 (820)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~ 397 (820)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666666777777776666655
No 424
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=46.24 E-value=1.3e+02 Score=36.37 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=14.5
Q ss_pred chhHHHHHHHHHHHHHHHHhhcC
Q 003433 760 SSGAARAMVHAWLLNIHSIVFEG 782 (820)
Q Consensus 760 ~~g~~~~~~~~w~~~~~~~~~~g 782 (820)
|+|.+...+.-.+.+|.++...|
T Consensus 1330 SLgs~~tklNffiHnLAQm~fs~ 1352 (1639)
T KOG0905|consen 1330 SLGSAFTKLNFFIHNLAQMRFSG 1352 (1639)
T ss_pred HhhhHHHHHHHHHHHHHHHhccC
Confidence 45655566666666666766666
No 425
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=45.92 E-value=58 Score=28.43 Aligned_cols=45 Identities=18% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCCcc-hhHHHHHHHHHhhcCchHHHHHHHHHhh
Q 003433 696 QALSLFDEVKLMDSSTA-SAFYNALTDMLWHFGQKRGAQLVVLEGK 740 (820)
Q Consensus 696 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 740 (820)
++..+|+.|...+-... +.+|...+..+.+.|++++|.+++..+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
No 426
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=45.10 E-value=4.4e+02 Score=28.63 Aligned_cols=130 Identities=14% Similarity=0.089 Sum_probs=78.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003433 160 TFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYG 239 (820)
Q Consensus 160 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 239 (820)
..-|.--...|+...|-+-...+++.-...|. ........+...|+++.+.+.+..+.+. +.....+...+++...
T Consensus 293 ~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~---~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~ 368 (831)
T PRK15180 293 TLSITKQLADGDIIAASQQLFAALRNQQQDPV---LIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLH 368 (831)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHhCCCCch---hhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhh
Confidence 33344444567777766555555554333333 3333445567788888888887665443 2234567778888888
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Q 003433 240 RSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGV 295 (820)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~ 295 (820)
+.|++++|..+-+-|....+. +...........-..| -++++...|+++...+.
T Consensus 369 ~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~-~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 369 GLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQ-LFDKSYHYWKRVLLLNP 422 (831)
T ss_pred chhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHh-HHHHHHHHHHHHhccCC
Confidence 889999998888888765554 2222222222222344 57788888887776543
No 427
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=45.07 E-value=57 Score=24.25 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=7.1
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 003433 446 LGGYGKQGKYDEVRRMFEQ 464 (820)
Q Consensus 446 i~~~~~~g~~~~A~~~~~~ 464 (820)
|.+|.+.|++++|.+++++
T Consensus 30 I~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 30 IYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 3333444444444433333
No 428
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=44.99 E-value=6.6e+02 Score=30.69 Aligned_cols=248 Identities=13% Similarity=0.074 Sum_probs=138.0
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHH
Q 003433 296 QPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTM 375 (820)
Q Consensus 296 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 375 (820)
.+|..+-...+..+.+.+..+ +...+..+++ .+|..+-...+.++.+.+........+..+... +|..+-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHH
Confidence 456666666677777766533 4444545554 245555556666665543322222333333332 365555556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003433 376 IDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKY 455 (820)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 455 (820)
+..+...+..+ .. .+-++.+ .+|...-...+.++.+.+..+. +..+.. .++..+-...+.++...+..
T Consensus 705 ~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 705 LDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccc
Confidence 66665543211 11 2222222 4455555666666666554332 222222 45666667777777777654
Q ss_pred HH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003433 456 DE-VRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDE 534 (820)
Q Consensus 456 ~~-A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 534 (820)
+. +...+..+.. .+|...-...+.++.+.|....+...+..+++. +|..+-...+.++.+.+. +++...+..
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 43 3444555544 356777777888888887765554445555542 455555666677777665 456677777
Q ss_pred HHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhh
Q 003433 535 MTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLG 572 (820)
Q Consensus 535 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~ 572 (820)
+++ .|+..+-...+.++.+.+....++..+.+++.
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 765 46777777777777775333455555555554
No 429
>PRK10941 hypothetical protein; Provisional
Probab=44.16 E-value=3e+02 Score=27.82 Aligned_cols=75 Identities=13% Similarity=-0.026 Sum_probs=44.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 003433 479 TLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE-GIRPNVVTYNSIIDAF 554 (820)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~ 554 (820)
.|-.+|.+.++++.|+++.+.+....+. |..-+.--.-.|.+.|.+..|..-++..++. .-.|+.......+...
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 4555666777777777777777665433 4555555555667777777777766666554 2233444444444433
No 430
>PHA02940 hypothetical protein; Provisional
Probab=43.95 E-value=3.2e+02 Score=26.66 Aligned_cols=69 Identities=10% Similarity=0.027 Sum_probs=44.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc--ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHh
Q 003433 648 FSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY--RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLW 724 (820)
Q Consensus 648 ~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 724 (820)
...|++-|.+.++.++-.-+.+++.+ +.. +...+ ....++.+..-++.+++.+-+-..+.|+.|..++-
T Consensus 145 v~~la~~yvq~vk~d~r~~~a~~l~k-----eLs---~~~d~~enepdle~d~keie~~lE~~~dl~rGtY~vL~~ald 215 (315)
T PHA02940 145 VILLAGRYVQDVKKDDRRTIANKLSK-----ELS---WTIDYQENEPDLESDFKEIEEELEEKDDLSRGTYKVLKRALD 215 (315)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHh-----hhh---HHHHHHhcCcchhhhHHHHHHHHhccchhhhhHHHHHHHHHH
Confidence 35677788888888887666555531 111 11111 23347778888888888877777888999887654
No 431
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=43.85 E-value=3.7e+02 Score=27.87 Aligned_cols=118 Identities=11% Similarity=0.019 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc------cCCHHHHHHHHHHHhhcCCchhHHHHHHHhccccchHHHH
Q 003433 624 QEILCILGVFQKMHKLKIKPNVVTFSAILNACSR------CNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQA 697 (820)
Q Consensus 624 ~~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~------~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 697 (820)
.-+++++.++++....+. |......+.|.+|.. .-+|..-..+|+-+....|.....+|....--.......+
T Consensus 270 ~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~ag 348 (415)
T COG4941 270 ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhH
Confidence 356778889998887665 888888888877763 2367777777877766555443333332211111123445
Q ss_pred HHHHHHHhhcCC-CcchhHHHHHHHHHhhcCchHHHHHHHHHhhhh
Q 003433 698 LSLFDEVKLMDS-STASAFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (820)
Q Consensus 698 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (820)
..+.+-+.+..- +..--++..-++++.+.|+.+||..-|+.+...
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 666665554311 111234566899999999999999999887654
No 432
>smart00463 SMR Small MutS-related domain.
Probab=43.44 E-value=20 Score=28.26 Aligned_cols=39 Identities=26% Similarity=0.190 Sum_probs=29.1
Q ss_pred chhhhhcchhHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHh
Q 003433 753 CLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLRYMIICL 796 (820)
Q Consensus 753 ~~d~~~~~~g~~~~~~~~w~~~~~~~~~~g~~~~~~~~~~~~~~ 796 (820)
.+|+|.++.++|..+++.|+.+.... +.. ..+.|++|..
T Consensus 3 ~lDLHG~~~~eA~~~l~~~l~~~~~~---~~~--~~~~II~G~G 41 (80)
T smart00463 3 SLDLHGLTVEEALTALDKFLNNARLK---GLE--QKLVIITGKG 41 (80)
T ss_pred eEEcCCCCHHHHHHHHHHHHHHHHHc---CCC--ceEEEEEccc
Confidence 58999999999999999998776532 221 3466777766
No 433
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.43 E-value=6.8e+02 Score=30.74 Aligned_cols=83 Identities=10% Similarity=0.078 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHH
Q 003433 301 TFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQD----IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMI 376 (820)
Q Consensus 301 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 376 (820)
.|..+++.+-+.+..+.+.++-..+++.- +++ ..+++.+.+-....|.+-+|...+-.-... ..-......++
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l-~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlv 1061 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENL-PDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHH
Confidence 35566666667777777777766666541 111 345566666666666666666555332211 01122344555
Q ss_pred HHHHHcCCHH
Q 003433 377 DGYAKAGRLD 386 (820)
Q Consensus 377 ~~~~~~g~~~ 386 (820)
..++.+|.++
T Consensus 1062 ivLfecg~l~ 1071 (1480)
T KOG4521|consen 1062 IVLFECGELE 1071 (1480)
T ss_pred HHHHhccchH
Confidence 5555555543
No 434
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=43.28 E-value=6.1e+02 Score=29.79 Aligned_cols=97 Identities=11% Similarity=0.095 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003433 227 TVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDAC---GKGGVDFKHVVEIFDDMLRNGVQPDRITFN 303 (820)
Q Consensus 227 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~ 303 (820)
+...+..||..+.+.|++++....-..|.+.-.. +...|-..+... ...+ +..++..+|++.+..-.. +..|.
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl-~~~lWl~Wl~d~~~mt~s~-~~~~v~~~~ekal~dy~~--v~iw~ 187 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPL-PPHLWLEWLKDELSMTQSE-ERKEVEELFEKALGDYNS--VPIWE 187 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHhhccCc-chhHHHHHHHHHhccccc--chHHH
Confidence 5667778888888999888766666666653222 445555444433 2344 677788888887765332 33333
Q ss_pred HHHHHHHh-------CCCHHHHHHHHHHHHH
Q 003433 304 SLLAVCSR-------GGLWEAARNLFNEMVH 327 (820)
Q Consensus 304 ~ll~~~~~-------~g~~~~A~~~~~~~~~ 327 (820)
-.+..+.. .++++..+.+|++.+.
T Consensus 188 e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 188 EVVNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHHHHhccccccccccchhhhHHHHHHHh
Confidence 33333322 2456666667766655
No 435
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=43.13 E-value=3.9e+02 Score=27.52 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=11.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 003433 372 YSTMIDGYAKAGRLDDALNMFSE 394 (820)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~ 394 (820)
+......||+.|+.+.|++.+.+
T Consensus 107 ~~~kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHH
Confidence 33444445555555555544443
No 436
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=42.59 E-value=1.6e+02 Score=23.68 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=7.5
Q ss_pred hCCCHHHHHHHHHHHH
Q 003433 311 RGGLWEAARNLFNEMV 326 (820)
Q Consensus 311 ~~g~~~~A~~~~~~~~ 326 (820)
..|+.+.|.+++..+.
T Consensus 48 ~~g~~~~ar~LL~~L~ 63 (88)
T cd08819 48 NHGNESGARELLKRIV 63 (88)
T ss_pred ccCcHHHHHHHHHHhc
Confidence 3344444444444444
No 437
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=42.57 E-value=49 Score=33.23 Aligned_cols=52 Identities=10% Similarity=0.124 Sum_probs=41.9
Q ss_pred cccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhh
Q 003433 689 YRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKR 741 (820)
Q Consensus 689 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 741 (820)
++.|+.++|..+|+.++.++|.+ +.++.-+|......++.-+|-+++-+++.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~-p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt 178 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTN-PQILIEMGQFREMHNEIVEADQCYVKALT 178 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCC-HHHHHHHhHHHHhhhhhHhhhhhhheeee
Confidence 46889999999999999999955 77777788777777777788877765543
No 438
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=42.47 E-value=94 Score=21.65 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=21.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 519 LCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (820)
Q Consensus 519 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 552 (820)
..+.|...++..++++|.+.|+.-+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666666777777766666666666655543
No 439
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.24 E-value=6.5e+02 Score=29.83 Aligned_cols=77 Identities=13% Similarity=0.112 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003433 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 238 (820)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 238 (820)
-..+=+.|...|+|++|+++-..-. ..-..++..-+..|...+++..|.++|.++.+ .|..+.--+
T Consensus 361 ~R~vWk~yLd~g~y~kAL~~ar~~p------~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKF 426 (911)
T KOG2034|consen 361 ARDVWKTYLDKGEFDKALEIARTRP------DALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKF 426 (911)
T ss_pred hHHHHHHHHhcchHHHHHHhccCCH------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHH
Confidence 3456677888999999998754321 11123556667888888999999999988843 344444445
Q ss_pred HhcCChhHHHHH
Q 003433 239 GRSGYCQEAISV 250 (820)
Q Consensus 239 ~~~g~~~~A~~~ 250 (820)
....+.+ ++..
T Consensus 427 l~~~~~~-~L~~ 437 (911)
T KOG2034|consen 427 LEINQER-ALRT 437 (911)
T ss_pred HhcCCHH-HHHH
Confidence 5555555 4433
No 440
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=41.23 E-value=60 Score=24.12 Aligned_cols=30 Identities=27% Similarity=0.291 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 508 DVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 508 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
|..-.-.+|.+|...|++++|.+.++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333334455666666666666666655543
No 441
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=40.57 E-value=1e+02 Score=31.58 Aligned_cols=90 Identities=13% Similarity=-0.041 Sum_probs=45.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHH-----hccccchHHHHHHHHHHHhhcCCCcchhHHHHHHHH
Q 003433 648 FSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLL-----MGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTDM 722 (820)
Q Consensus 648 ~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 722 (820)
|--=++-|.+..++..|...|.+-++.+-.+..+...++ ..+.-|++..|+.--.++++.+|.+..+ |.-=+.+
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka-~~R~Akc 162 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKA-YIRGAKC 162 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-hhhhhHH
Confidence 445556666666666666666665543222222211111 1123456666666666666677755333 3334445
Q ss_pred HhhcCchHHHHHHHHH
Q 003433 723 LWHFGQKRGAQLVVLE 738 (820)
Q Consensus 723 ~~~~g~~~~A~~~~~~ 738 (820)
+....++++|..+.++
T Consensus 163 ~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5555555555544433
No 442
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=40.21 E-value=4.3e+02 Score=27.11 Aligned_cols=15 Identities=27% Similarity=0.122 Sum_probs=8.0
Q ss_pred hcCChHHHHHHHHHH
Q 003433 205 RLGKVDLAKNIFETA 219 (820)
Q Consensus 205 ~~g~~~~A~~~~~~~ 219 (820)
..|++..|.+.+-.+
T Consensus 385 SaGDy~~AiETllTA 399 (498)
T KOG4849|consen 385 SAGDYKGAIETLLTA 399 (498)
T ss_pred ccccchhHHHHHHHH
Confidence 445666665555444
No 443
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=40.19 E-value=56 Score=19.63 Aligned_cols=28 Identities=4% Similarity=0.017 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHhhcCCCcchhHHHHHHH
Q 003433 693 IWVQALSLFDEVKLMDSSTASAFYNALTD 721 (820)
Q Consensus 693 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 721 (820)
..+.|..+|+++++..| .+...|..+++
T Consensus 2 ~~~~~r~i~e~~l~~~~-~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFP-KSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCC-CChHHHHHHHH
Confidence 34556666666666555 33444544443
No 444
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=39.77 E-value=93 Score=29.54 Aligned_cols=35 Identities=17% Similarity=0.078 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhh
Q 003433 541 RPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQK 575 (820)
Q Consensus 541 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~ 575 (820)
.|+..+|..++.++...|+.++|.+...++...+|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 55556666666666666666666555555555544
No 445
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=39.76 E-value=4.3e+02 Score=26.97 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHH
Q 003433 439 AVTYNALLGGYGKQGKYDEVR 459 (820)
Q Consensus 439 ~~~~~~li~~~~~~g~~~~A~ 459 (820)
..+|.-|+.+++..|+.+-.+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 456777888888888776543
No 446
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=39.72 E-value=60 Score=21.03 Aligned_cols=27 Identities=11% Similarity=0.173 Sum_probs=17.2
Q ss_pred HHHHHHHhccCCHHHHHHHHH--HHhhcC
Q 003433 649 SAILNACSRCNSFEDASMLLE--ELRLFD 675 (820)
Q Consensus 649 ~~ll~a~~~~g~~~eA~~~~~--~~~~~~ 675 (820)
-+++-.+...|++++|+++|. -+...+
T Consensus 5 y~~a~~~y~~~ky~~A~~~~~y~~l~~ld 33 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHFFQYAFLCALD 33 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 456667778888888888844 444333
No 447
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=39.23 E-value=2.9e+02 Score=24.83 Aligned_cols=81 Identities=12% Similarity=0.191 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003433 477 YSTLIDVYSKGGLYKEAMQIFREFKQAGL-----KADVVLYSALIDALCKNGL-VESAVSLLDEMTKEGIRPNVVTYNSI 550 (820)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l 550 (820)
.|.++.-....+++.-.+.+++.+..... ..+..+|.+++.+..+..- ---+..+|.-|.+.+.+.+..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34555544555555555555554422100 1356678888888765554 44567778888877788888888888
Q ss_pred HHHHhhc
Q 003433 551 IDAFGRS 557 (820)
Q Consensus 551 l~~~~~~ 557 (820)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 8887665
No 448
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=39.19 E-value=1.9e+02 Score=25.16 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 492 EAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (820)
Q Consensus 492 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (820)
+..+.++.+...++.|++.....-+.+|-+.+++..|.++|+-....
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34455556666677777777777788888888888888887777653
No 449
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=38.75 E-value=3.4e+02 Score=25.59 Aligned_cols=56 Identities=16% Similarity=0.326 Sum_probs=35.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC--------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003433 444 ALLGGYGKQGKYDEVRRMFEQMKADC--------------VSPNLLTYSTLIDVYSKGGLYKEAMQIFRE 499 (820)
Q Consensus 444 ~li~~~~~~g~~~~A~~~~~~m~~~~--------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 499 (820)
+++..|.+.-++.+++++++.|.+.. ..+.-...|.-...+.+.|.++.|+.++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 45556666666777777666665421 123345566677777788888888877764
No 450
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.45 E-value=6.2e+02 Score=28.44 Aligned_cols=95 Identities=14% Similarity=0.150 Sum_probs=57.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhh
Q 003433 481 IDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALC-KNGLVESAVSLLDEMTKE---GIRPNVVTYNSIIDAFGR 556 (820)
Q Consensus 481 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~ 556 (820)
|..+.+.|.+..|.++.+.+....+.-|+.....+|+.|+ ++.+++-.+++++..... ..-||..--.+|..-|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 4455677888888888888887766557777777787774 667777777777776432 234454333334333433
Q ss_pred cCc---hhhhHHhHHHHhhhhh
Q 003433 557 SAT---TECTVDDVERDLGKQK 575 (820)
Q Consensus 557 ~g~---~~~a~~~~~~~l~~~~ 575 (820)
... -+.|...+.+|+...|
T Consensus 429 ~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred cCChhhHHHHHHHHHHHHHhCc
Confidence 322 2334444455554444
No 451
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=38.29 E-value=1.4e+02 Score=25.25 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=17.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 407 YNTVLSIYAKLGRFEEALLVCKEMES 432 (820)
Q Consensus 407 ~~~li~~~~~~g~~~~A~~~~~~~~~ 432 (820)
|..|+..|...|..++|++++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666777777777777777766654
No 452
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=38.23 E-value=1e+02 Score=29.20 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCC
Q 003433 628 CILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDN 676 (820)
Q Consensus 628 ~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~ 676 (820)
..++..++... ..|+..+|..++.++...|+.++|.+...++...-|
T Consensus 129 ~~~~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 129 AYIEWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34455566555 789999999999999999999999999999886655
No 453
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.95 E-value=6.3e+02 Score=28.38 Aligned_cols=125 Identities=13% Similarity=0.197 Sum_probs=71.1
Q ss_pred HcCCCHHHHHHHHHHHHHcccc---------cCChhHHHHHHHHHHHhcCChHHHHHHHHHHH-------HcCC------
Q 003433 167 GNRGEWSKAIQCFAFAVKREER---------KNDQGKLASAMISILGRLGKVDLAKNIFETAL-------NEGY------ 224 (820)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~------ 224 (820)
.+...+++|...|.-+...... .|-.......+..++..+|+.+.|..+.++.+ ...+
T Consensus 249 ~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~ 328 (665)
T KOG2422|consen 249 EHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGN 328 (665)
T ss_pred ecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccc
Confidence 3455677777777766653210 11112245567888888898887777665543 2111
Q ss_pred -------CCCHHHHHHH---HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 003433 225 -------GNTVYAFSAL---ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDML 291 (820)
Q Consensus 225 -------~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~ 291 (820)
.-|-..|.+| |..+.+.|.+..|+++..-+.+....-|....-.+|+.|+-..+++.-.+++++...
T Consensus 329 cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 329 CRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred ccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1122333333 334556677777777777776655444566666666666433226666666666654
No 454
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=37.69 E-value=63 Score=34.52 Aligned_cols=12 Identities=25% Similarity=0.279 Sum_probs=5.7
Q ss_pred chhhccccCCCc
Q 003433 103 RFVSKMHFGRPK 114 (820)
Q Consensus 103 ~~~~~~~~~~~~ 114 (820)
+...+++|...+
T Consensus 282 r~~~KL~Wr~~~ 293 (817)
T KOG1925|consen 282 RKTVKLFWRDVK 293 (817)
T ss_pred CceeEEEeecce
Confidence 344455554443
No 455
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=37.62 E-value=4.2e+02 Score=28.41 Aligned_cols=52 Identities=17% Similarity=0.226 Sum_probs=25.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 003433 450 GKQGKYDEVRRMFEQMKADCVSPNLL--TYSTLIDVYS--KGGLYKEAMQIFREFKQ 502 (820)
Q Consensus 450 ~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~--~~g~~~~A~~~~~~m~~ 502 (820)
.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3555566666666665554 333332 2333333332 34556666666665544
No 456
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=37.04 E-value=5.3e+02 Score=27.64 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=26.5
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 003433 416 KLGRFEEALLVCKEMESSGIRKDAV--TYNALLGGYG--KQGKYDEVRRMFEQMKA 467 (820)
Q Consensus 416 ~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~m~~ 467 (820)
+.+++..|.++|+.+.+. ++.+.. .+..+..+|. ...++++|.+.++....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 556666666666666554 333322 3333333332 34556666666666554
No 457
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=36.86 E-value=29 Score=37.15 Aligned_cols=29 Identities=14% Similarity=0.055 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003433 6 PHCSITATKPYQNHQYPHNHLKNNHHRQS 34 (820)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (820)
|+|+|+|+|.|+++|.|.|.|.|..|.++
T Consensus 5 p~P~P~P~P~P~P~P~P~PePtP~~~~RF 33 (465)
T PF01690_consen 5 PPPSPGPSPTPPPPPAPTPEPTPAKHERF 33 (465)
T ss_pred CCCCCCCCCCCCCCCcccCCCcccCccce
No 458
>PRK10941 hypothetical protein; Provisional
Probab=36.70 E-value=4.3e+02 Score=26.69 Aligned_cols=86 Identities=12% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHH
Q 003433 404 RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC-VSPNLLTYSTLID 482 (820)
Q Consensus 404 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~ 482 (820)
....+.|-.+|.+.++++.|+.+.+.+.... +.++.-+.--.-.|.+.|.+..|..=++..++.. -.|+.......+.
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q ss_pred HHHhcCCH
Q 003433 483 VYSKGGLY 490 (820)
Q Consensus 483 ~~~~~g~~ 490 (820)
........
T Consensus 260 ~l~~~~~~ 267 (269)
T PRK10941 260 SIEQKQIV 267 (269)
T ss_pred HHhhcCcc
No 459
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=36.30 E-value=2.7e+02 Score=28.94 Aligned_cols=87 Identities=11% Similarity=0.059 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (820)
..+..-++..-..---++.+.++..+++.-+.....+..|..++++....|.++..+.+|++++..|..|-...-.++++
T Consensus 104 ~tlsECl~Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~d 183 (353)
T PF15297_consen 104 KTLSECLNLIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVD 183 (353)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q ss_pred HHHhcCC
Q 003433 237 AYGRSGY 243 (820)
Q Consensus 237 ~~~~~g~ 243 (820)
.+....+
T Consensus 184 iL~~k~~ 190 (353)
T PF15297_consen 184 ILKMKSQ 190 (353)
T ss_pred HHHhhhh
No 460
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=36.01 E-value=1.4e+02 Score=21.44 Aligned_cols=51 Identities=18% Similarity=0.154 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcC
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLG 207 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 207 (820)
|..-.+.-++.+.|++++|++..+.+++..+....-..+...+-+.-.+.|
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~kdg 52 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQKDG 52 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhccC
No 461
>PF13934 ELYS: Nuclear pore complex assembly
Probab=35.97 E-value=2.5e+02 Score=27.44 Aligned_cols=105 Identities=17% Similarity=0.041 Sum_probs=0.0
Q ss_pred CcchHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHH
Q 003433 138 DDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFE 217 (820)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 217 (820)
|..+.+.+++.+......++-...++..+..+|+.+.|+.++..+.-. ..+......++.. ..++.+.+|..+-+
T Consensus 90 D~~~~~~A~~~L~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~----l~s~~~~~~~~~~-La~~~v~EAf~~~R 164 (226)
T PF13934_consen 90 DHGDFEEALELLSHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPP----LSSPEALTLYFVA-LANGLVTEAFSFQR 164 (226)
T ss_pred ChHhHHHHHHHhCCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCC----CCCHHHHHHHHHH-HHcCCHHHHHHHHH
Q ss_pred HHHHcCCCCCHHHHHHHHHHHH----hcCChhHHHHH
Q 003433 218 TALNEGYGNTVYAFSALISAYG----RSGYCQEAISV 250 (820)
Q Consensus 218 ~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~ 250 (820)
...+... ...+..++..+. +.+..++-+.+
T Consensus 165 ~~~~~~~---~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 165 SYPDELR---RRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred hCchhhh---HHHHHHHHHHHHHHhhhhhHHHHHHhC
No 462
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=35.73 E-value=2e+02 Score=32.83 Aligned_cols=90 Identities=13% Similarity=0.132 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003433 1 MASTPPHCSITATKPYQNHQYPHNHLKNNHHRQSHHPSSRPHWTSHK--VSLTKPPLSPSPRNAPKPAATSTTVAPNPKP 78 (820)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~pp~~p~p~~~~~p~~~~~~~~~~~~~ 78 (820)
+..++-+|...-+|.|-..|....+.+|.|.+.++.++.+|.-.+.+ ...+.-|....+.....|+.+..++|+...|
T Consensus 961 ~~~~~~~paA~~~p~p~~~~~~~~~~~~~p~~~s~~~s~~~~~~p~s~p~~~~~~~~~~~~~~~~~~s~~q~~pP~~g~P 1040 (1106)
T KOG0162|consen 961 YGQNGVSPAAKGSPLPAQKPVNTYNQRPPPVSTSTTTSQQPSARPSSKPTVFTKVPDAGASGNGRKPSGPQRPPPPAGRP 1040 (1106)
T ss_pred ccCCCCCccccCCCCCCCCCCCccccCCCCCCcccccccccccCCCCCCccccccCcccCcccccCCCCCCCCCCCCCCC
Q ss_pred CCCCCCCCCCCC
Q 003433 79 FHSLSPLPSSKS 90 (820)
Q Consensus 79 ~~~~~~~~~~~~ 90 (820)
.|.+++.+...+
T Consensus 1041 ~PpPp~~~~k~p 1052 (1106)
T KOG0162|consen 1041 KPPPPAKPPKNP 1052 (1106)
T ss_pred CccCCCCCCCCc
No 463
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.13 E-value=1e+02 Score=35.52 Aligned_cols=69 Identities=10% Similarity=0.036 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 003433 2 ASTPPHCSITATKPYQNHQYPHNHLKNNHHRQSHHPSSRPHWTSHKVSLTKPPLSPSPRNAPKPAATST 70 (820)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~~p~p~~~~~p~~~~~ 70 (820)
++.+++++++++++.+.++...+.+.+..+.|+.++.....-.......+++++.+++..+.+......
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (620)
T PRK14948 526 PPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSP 594 (620)
T ss_pred CccCCCCCCCCCCCcCCCCcCCCCCCCCCCCCCCCCcCcccccCCCcccCCCCCCCCCCCCCCcccCCh
No 464
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.44 E-value=1.5e+02 Score=31.81 Aligned_cols=77 Identities=16% Similarity=0.140 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003433 6 PHCSITATKPYQNHQYPHNHLKNNHHRQSHHPSSRPHWTSHKVS--LTKPPLSPSPRNAPKPAATSTTVAPNPKPFHSL 82 (820)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~pp~~p~p~~~~~p~~~~~~~~~~~~~~~~~ 82 (820)
|-.+..+-+.++.+.+|++.+....+.|+|+.+..+.-++.-.+ ..+|-.|...+++||+++++|.++-.....++.
T Consensus 404 p~~~~~s~p~pq~qNyppp~p~f~m~~~hP~~~~p~~~~g~~~P~~~mpp~~P~~~~pppP~~pp~p~~~~~q~q~~~y 482 (483)
T KOG2236|consen 404 PSSSDNSGPSPQQQNYPPPSPSFPMFQPHPPESNPPANFGQANPFNQMPPAYPHQQSPPPPPPPPPPNSPMNQMQNPSY 482 (483)
T ss_pred ccccCCCCCCcccCCCCCCCCCCCccCCCCCCCCCcccccccCccccCCCCCccccCCCCCCCCCCCCChhhcccCCCC
No 465
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=34.34 E-value=41 Score=29.38 Aligned_cols=34 Identities=15% Similarity=0.368 Sum_probs=0.0
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh
Q 003433 521 KNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR 556 (820)
Q Consensus 521 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 556 (820)
..|.-.+|..+|++|++.|-.|| .|+.|+..+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a~~ 140 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEAKQ 140 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHhcC
No 466
>PTZ00449 104 kDa microneme/rhoptry antigen; Provisional
Probab=34.18 E-value=4.5e+02 Score=28.79 Aligned_cols=95 Identities=15% Similarity=0.199 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003433 4 TPPHCSITATKPYQNHQYPHNHLKNNHHRQSHHP--SSRPHWTSHKVSLTKPPLSPSPRNAPKPAATSTTVAPNPKPFHS 81 (820)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~pp~~p~p~~~~~p~~~~~~~~~~~~~~~~ 81 (820)
|.|+--|.-++.+.-|..|-.+++|--++.+..| +..|..-.-+..+.+|..|-+|..|-.|.++..+.+|..+-.+-
T Consensus 573 p~lSK~Pe~PK~Pk~PKdPksPK~PK~Prspq~P~~PkSPk~Pe~~d~PkSPK~PespksPKsP~sPqrP~SPkRPEsPK 652 (943)
T PTZ00449 573 PTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPK 652 (943)
T ss_pred CCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCC
Q ss_pred CCCCCCCCCCCCCCCcc
Q 003433 82 LSPLPSSKSELAPDFSG 98 (820)
Q Consensus 82 ~~~~~~~~~~~~~~~~~ 98 (820)
....+-++-..-+.+++
T Consensus 653 iPesPK~PkSPKpP~dP 669 (943)
T PTZ00449 653 IIKSPKPPKSPKPPFDP 669 (943)
T ss_pred CCCCCCCCCCCCCCCCC
No 467
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=34.10 E-value=1e+02 Score=32.70 Aligned_cols=71 Identities=11% Similarity=0.083 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003433 3 STPPHCSITATKPYQNHQYPHNHLKNNHHRQSHHP--SSRPHWTSHKVSLTKPPLSPSPRNAPKPAATSTTVA 73 (820)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~pp~~p~p~~~~~p~~~~~~~~ 73 (820)
+||-|+|.++.|..--|-.+.....|+....|++| +-||.++-+.+-++...|+|.-...|.|....|.+.
T Consensus 273 lPchpkpmpSlpqleepgrenqfaepflqekpsswelpIrPqhsandpilpardPhPkinaaplpsdenplpa 345 (666)
T KOG4825|consen 273 LPCHPKPMPSLPQLEEPGRENQFAEPFLQEKPSSWELPIRPQHSANDPILPARDPHPKINAAPLPSDENPLPA 345 (666)
T ss_pred CCCCCCCCCccccccCCCCccccccchhhcCCCcceeeccccccccCccCCCCCCCCcccCCCCCCCCCCChh
No 468
>PRK13342 recombination factor protein RarA; Reviewed
Probab=33.98 E-value=6.5e+02 Score=27.35 Aligned_cols=171 Identities=13% Similarity=0.133 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHC---CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--HH
Q 003433 279 DFKHVVEIFDDMLRN---GV-QPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQM--DL 352 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~---g~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~--~~ 352 (820)
..++...++...... |+ ..+......++..+ .|+...++.+++.+...+...+......++.......+- +.
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~ 229 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDGDE 229 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCccH
Q ss_pred HHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHH
Q 003433 353 AFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGR-----FEEALLVC 427 (820)
Q Consensus 353 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~-----~~~A~~~~ 427 (820)
-.+++..+.+. ++..+.+.|+.++..|.+.|..|....-..++.++-..|. ..-|...+
T Consensus 230 ~~~~isa~~ks----------------~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~ 293 (413)
T PRK13342 230 HYDLISALHKS----------------IRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAA 293 (413)
T ss_pred HHHHHHHHHHH----------------HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHH
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003433 428 KEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKA 467 (820)
Q Consensus 428 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 467 (820)
+.....|++--.......+-.++..-+-..+...+....+
T Consensus 294 ~~~~~~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~a~~ 333 (413)
T PRK13342 294 DAVERIGMPEGRIALAQAVIYLALAPKSNAAYTAINAALA 333 (413)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
No 469
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=33.85 E-value=3.2e+02 Score=23.80 Aligned_cols=97 Identities=8% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 003433 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT-VYAFSALISA 237 (820)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~ 237 (820)
...+...+-..+.-..-..+++++++.-...+....--.-+=-.+.-....+.+.++|..|...|+... +..|......
T Consensus 29 I~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~ 108 (126)
T PF08311_consen 29 IKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSSDPREIFKFLYSKGIGTKLALFYEEWAEF 108 (126)
T ss_dssp HHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBSHHHHHHHHHHHHTTSTTBHHHHHHHHHH
T ss_pred HHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHccCHHHHHHHHHHcCccHHHHHHHHHHHHH
Q ss_pred HHhcCChhHHHHHHHHHH
Q 003433 238 YGRSGYCQEAISVFNSMK 255 (820)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~ 255 (820)
+...|++++|.++|+.-+
T Consensus 109 le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 109 LEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhC
No 470
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=33.34 E-value=8.3e+02 Score=28.42 Aligned_cols=531 Identities=12% Similarity=0.058 Sum_probs=0.0
Q ss_pred cchHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHH-hcCChHHHHHHHH
Q 003433 139 DVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILG-RLGKVDLAKNIFE 217 (820)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~ 217 (820)
+..++.+...+-.+......|..+|.......+++--.+. +++.+.....-.+++..++..-- +..+.+.-+.++.
T Consensus 127 D~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~A---il~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~ 203 (929)
T KOG2062|consen 127 DQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEA---ILKSDSVIGNLTYLLELLISLVNNREFRNKVLRLLVK 203 (929)
T ss_pred CHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHH---hccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCC
Q 003433 218 TALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQP 297 (820)
Q Consensus 218 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p 297 (820)
...+. ..|| |..+..+|.-..+.+.|.++++++.+ -|......-|.-..... -..+-+....+-....-..
T Consensus 204 ~y~~~-~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~----e~~~llayQIAFDL~es-asQefL~~v~~~l~~d~~~ 274 (929)
T KOG2062|consen 204 TYLKL-PSPD---YFSVCQCYVFLDDAEAVADLLEKLVK----EDDLLLAYQIAFDLYES-ASQEFLDSVLDRLPADDAR 274 (929)
T ss_pred HHccC-CCCC---eeeeeeeeEEcCCHHHHHHHHHHHHh----cchhhhHHHHHHHHhhc-cCHHHHHHHHHHccccccc
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHH---
Q 003433 298 DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYST--- 374 (820)
Q Consensus 298 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~--- 374 (820)
|......+++.+.. +...+++.+..-..-..|....+..-+.. +..-...|.-+-......|-.-|...-+.
T Consensus 275 de~p~~kii~ILSG----e~tik~~l~FL~~~N~tD~~iL~~iK~s~-r~sv~H~A~~iAN~fMh~GTT~D~FlR~NL~W 349 (929)
T KOG2062|consen 275 DEKPMEKIISILSG----EETIKLYLQFLLRHNNTDLLILEEIKESV-RNSVCHTATLIANAFMHAGTTSDTFLRNNLDW 349 (929)
T ss_pred ccChHHHHHHHhcC----chHHHHHHHHHHHcCCchHHHHHHHHHHH-HHhhhhHHHHHHHHHHhcCCcchHHHHhchhH
Q ss_pred ---------------------------------------------------HHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003433 375 ---------------------------------------------------MIDGYAKAGRLDDALNMFSEMKFLGIGLD 403 (820)
Q Consensus 375 ---------------------------------------------------li~~~~~~g~~~~A~~~~~~m~~~~~~~d 403 (820)
+.-++.++|..++..+++.+..+. .-+
T Consensus 350 lskAtNWaKFtAtAsLGvIH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~--~~~ 427 (929)
T KOG2062|consen 350 LSKATNWAKFTATASLGVIHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRGITDYLLQQLKT--AEN 427 (929)
T ss_pred HhhcchHhhhhhhhhcceeeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCccHHHHHHHHHHh--ccc
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH---HH
Q 003433 404 RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYS---TL 480 (820)
Q Consensus 404 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~---~l 480 (820)
...-.-..-++.-.|.-..-.++|+.+.+.-...+.++-.+-.-+..-.+--..-.+.+++|......-...-.. .+
T Consensus 428 e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~v 507 (929)
T KOG2062|consen 428 EVVRHGACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAV 507 (929)
T ss_pred hhhhhhhhhhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHH
Q ss_pred HHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCc
Q 003433 481 IDVYSKGGLYKEAMQIFREFK-QAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSAT 559 (820)
Q Consensus 481 i~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 559 (820)
.-++..-|+-++|..+.++|. ..++-.-..-.-++..+|+-.|+..-..+++.-.... ..-|+.-+..+.-++.-..+
T Consensus 508 GiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 508 GIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred hHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecC
Q ss_pred hhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHC
Q 003433 560 TECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKL 639 (820)
Q Consensus 560 ~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~ 639 (820)
.+....+++ |+.+
T Consensus 587 p~~~~s~V~-------------------------------------------------------------------lLse 599 (929)
T KOG2062|consen 587 PEQLPSTVS-------------------------------------------------------------------LLSE 599 (929)
T ss_pred hhhchHHHH-------------------------------------------------------------------HHhh
Q ss_pred CCCCCHHH--HHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhccccchHHHHHHHHHHHhhcCCCcchhHHH
Q 003433 640 KIKPNVVT--FSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYN 717 (820)
Q Consensus 640 ~~~Pd~~~--~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 717 (820)
..+|-... -.+|+-+|+-.|+ .+|+.+++-|.. |+.++.-.-.++ ..|.-+.++.-+..|+ ++
T Consensus 600 s~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~-D~~~fVRQgAlI--------a~amIm~Q~t~~~~pk-----v~ 664 (929)
T KOG2062|consen 600 SYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS-DPVDFVRQGALI--------ALAMIMIQQTEQLCPK-----VN 664 (929)
T ss_pred hcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc-ChHHHHHHHHHH--------HHHHHHHhcccccCch-----HH
Q ss_pred HHHHHHhh--cCchHHHHHHHHHhhhhhhhhh-------hhhccchhhhhcchhHHHHHHHHH
Q 003433 718 ALTDMLWH--FGQKRGAQLVVLEGKRRQVWEN-------VWSESCLDLHLMSSGAARAMVHAW 771 (820)
Q Consensus 718 ~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~~d~~~~~~g~~~~~~~~w 771 (820)
-.-.-|.+ ..+.++...-+-....+|+-+. ......+..+..++-.....+++|
T Consensus 665 ~frk~l~kvI~dKhEd~~aK~GAilAqGildaGGrNvtislqs~tg~~~~~~vvGl~~Flq~W 727 (929)
T KOG2062|consen 665 GFRKQLEKVINDKHEDGMAKFGAILAQGILDAGGRNVTISLQSMTGHTKLDAVVGLVVFLQYW 727 (929)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhcCCceEEEEEeccCCCCchHHHHHHHHHHHHH
No 471
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=33.29 E-value=9.9e+02 Score=29.30 Aligned_cols=199 Identities=16% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---
Q 003433 233 ALISAYGRSGYCQEAISVFNSMK-RYN--LKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLL--- 306 (820)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~-~~~--~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll--- 306 (820)
..|+-+...+++.+|+.+.++=+ ..+ +.-|...|-.=+..+.++=.+.+..--++..+.+. ......|....
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~E--Dvt~tmY~~~~~~~ 776 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNE--DVTKTMYKDTYPPS 776 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccc--cccccccccccccc
Q ss_pred ---------HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHchhCCCCCCHHHHHHH
Q 003433 307 ---------AVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGA--QMDLAFEIMAEMPAKNISPNVVTYSTM 375 (820)
Q Consensus 307 ---------~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~l 375 (820)
......+++...-+.+....+. ..........++.+|.+.+ ++++|+.+..++.+.
T Consensus 777 ~~~~~~~~~~~~~~~~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~------------ 843 (928)
T PF04762_consen 777 SEAQPNSNSSTASSESKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE------------ 843 (928)
T ss_pred cccccccccCCCccccHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc------------
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---
Q 003433 376 IDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQ--- 452 (820)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 452 (820)
+...|.+.++.+.-. ..-...|+.-+..| +++-|+.+-++-. .|+.-|--+++-+-+.
T Consensus 844 --------~~~~ae~alkyl~fL--vDvn~Ly~~ALG~Y----Dl~Lal~VAq~SQ-----kDPKEYLPfL~~L~~l~~~ 904 (928)
T PF04762_consen 844 --------DPESAEEALKYLCFL--VDVNKLYDVALGTY----DLELALMVAQQSQ-----KDPKEYLPFLQELQKLPPL 904 (928)
T ss_pred --------ChHHHHHHHhHheee--ccHHHHHHHHhhhc----CHHHHHHHHHHhc-----cChHHHHHHHHHHHhCChh
Q ss_pred ----------CCHHHHHHHHHHH
Q 003433 453 ----------GKYDEVRRMFEQM 465 (820)
Q Consensus 453 ----------g~~~~A~~~~~~m 465 (820)
+++++|++-+.++
T Consensus 905 ~rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 905 YRRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred heeeeHhhhhCCHHHHHHHHHhh
No 472
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=33.03 E-value=2.3e+02 Score=24.40 Aligned_cols=64 Identities=8% Similarity=-0.007 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHh-------hcCCchhHHHHHHHhcc-----ccchHHHHHHHHHHHhhc
Q 003433 644 NVVTFSAILNACSRCNSFEDASMLLEELR-------LFDNQVYGVAHGLLMGY-----RDNIWVQALSLFDEVKLM 707 (820)
Q Consensus 644 d~~~~~~ll~a~~~~g~~~eA~~~~~~~~-------~~~~~~~~~~~~~~~~~-----~~~~~~~A~~~~~~~~~~ 707 (820)
|...+..|..++...|+++++...-+..+ +++.+.-..+...+..- ..|..++|...|+.+-++
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
No 473
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.01 E-value=6.4e+02 Score=26.99 Aligned_cols=169 Identities=14% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHH-------HHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC---------
Q 003433 230 AFSALISAYGRSGYCQEAISVFNS-------MKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN--------- 293 (820)
Q Consensus 230 ~~~~li~~~~~~g~~~~A~~~~~~-------m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~--------- 293 (820)
.+.-+.+.|..+|+++.|++.|.+ ... .+..|-.+|..-...| +|.....+-.+..+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh-----vInm~ln~i~VSI~~~-nw~hv~sy~~~A~st~~~~~~~~q 225 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH-----VINMCLNLILVSIYMG-NWGHVLSYISKAESTPDANENLAQ 225 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH-----HHHHHHHHHHHHHhhc-chhhhhhHHHHHHhCchhhhhHHH
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC------CCHHHHHHHHHHHHhcCCHHHHHHH-----HHHchh
Q 003433 294 GVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGID------QDIFTYNTLLDAICKGAQMDLAFEI-----MAEMPA 362 (820)
Q Consensus 294 g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~------~~~~~~~~ll~~~~~~g~~~~A~~~-----~~~m~~ 362 (820)
.+.+-...+..|...+.+ ++..|.+.|-......+. |..++....+.+++--++-+.-+.+ |+...+
T Consensus 226 ~v~~kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle 303 (466)
T KOG0686|consen 226 EVPAKLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE 303 (466)
T ss_pred hcCcchHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHH
Q 003433 363 KNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFL-----GIGLDRVSYNTVLS 412 (820)
Q Consensus 363 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~d~~~~~~li~ 412 (820)
. ....+..+...| .+++...+++++++... -+.|.+.+.-.+|.
T Consensus 304 l----~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 304 L----EPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred c----ChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
No 474
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=32.99 E-value=42 Score=29.33 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003433 203 LGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR 240 (820)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 240 (820)
+.+.|.-.+|.++|++|++.|.+|| .|+.|+.....
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a~~ 140 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEAKQ 140 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHhcC
No 475
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=32.73 E-value=1.7e+02 Score=20.42 Aligned_cols=38 Identities=16% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 410 VLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLG 447 (820)
Q Consensus 410 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 447 (820)
++....+.|-..++..++++|.+.|+..+...|..++.
T Consensus 8 iL~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 8 ILLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
No 476
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=32.41 E-value=2.8e+02 Score=24.17 Aligned_cols=60 Identities=12% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 282 HVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLD 342 (820)
Q Consensus 282 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 342 (820)
+..+-+..+....+.|+......-+++|.+.+|+..|.++|+-++.+ +.+...+|-.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
No 477
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=31.61 E-value=4.5e+02 Score=27.43 Aligned_cols=77 Identities=16% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003433 476 TYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD----VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSII 551 (820)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 551 (820)
++.--+...-..--.++...++.++++. .|+ +.-|-+++......|.+++++.+|++++..|..|-...-..++
T Consensus 105 tlsECl~Li~eGcp~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~ 182 (353)
T PF15297_consen 105 TLSECLNLIEEGCPKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLV 182 (353)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHH
Q ss_pred HHH
Q 003433 552 DAF 554 (820)
Q Consensus 552 ~~~ 554 (820)
+.+
T Consensus 183 diL 185 (353)
T PF15297_consen 183 DIL 185 (353)
T ss_pred HHH
No 478
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=31.44 E-value=2e+02 Score=34.83 Aligned_cols=88 Identities=16% Similarity=0.138 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC-cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003433 2 ASTPPHCSITATKPYQNHQYPHNHL-KNNHHRQSHHPSSRPHW-TSHKVSLTKPPLSPSPRNAPKPAATSTTVAPNPKPF 79 (820)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~pp~~p~p~~~~~p~~~~~~~~~~~~~~ 79 (820)
++.......-....-..++.+..++ .+...+++++|++.|.. ...++++++||..+.+.+++++++.+....+.+.+.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~s~~~~~~~~~~~~~p~pppppp~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (833)
T KOG1922|consen 300 PSKVSTFDFNFLQRESPPPPPILTPKLPALISPTPPPPPPPPNNSGGPPPPPPPPGLALPSPPPPLPPLPALKAPPPESS 379 (833)
T ss_pred CCCccccccccCccccCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCCCCCccccCCCCCCCCCccccCCCCCCc
Q ss_pred CCCCCCCCCC
Q 003433 80 HSLSPLPSSK 89 (820)
Q Consensus 80 ~~~~~~~~~~ 89 (820)
...+......
T Consensus 380 ~~~~~~~~~~ 389 (833)
T KOG1922|consen 380 EGLSSAPGPQ 389 (833)
T ss_pred cccccccCCC
No 479
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=31.42 E-value=3.9e+02 Score=28.38 Aligned_cols=95 Identities=14% Similarity=0.180 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCC---------------------------
Q 003433 3 STPPHCSITATKPYQNHQYPHNHLKNNHHRQSHHPSSRPHWTSHKVSLTKPPL--------------------------- 55 (820)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~--------------------------- 55 (820)
||||--+|-.++.+..|-.|++.+++.++-|..++++--.-.+--++.+++++
T Consensus 48 Ppp~~lkP~~s~ap~~p~sppP~veraqpdp~apdtpa~p~~~vapt~s~~g~l~qLqsRq~dyk~aalqAK~~Gderka 127 (523)
T KOG3837|consen 48 PPPPGLKPGDSDAPVRPDSPPPNVERAQPDPKAPDTPAFPEQFVAPTRSHPGPLAQLQSRQRDYKLAALQAKQQGDERKA 127 (523)
T ss_pred CCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHHHHHHHhhcccHHHH
Q ss_pred ----------------------------CCCCC-CCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCc
Q 003433 56 ----------------------------SPSPR-NAPKPAATSTT----VAPNPKPFHSLSPLPSSKSELAPDFS 97 (820)
Q Consensus 56 ----------------------------~p~p~-~~~~p~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (820)
||+|. -.|-|++..|. .++.|++.+..+..|+++++.....+
T Consensus 128 ~mh~Rvakqfd~vIka~~rG~~VdlseLPppPdtmgpep~~vAp~aAAel~~~Ppaqp~~Pt~pss~ppprasts 202 (523)
T KOG3837|consen 128 AMHFRVAKQFDAVIKALSRGEPVDLSELPPPPDTMGPEPPQVAPSAAAELPSQPPAQPTAPTTPSSPPPPRASTS 202 (523)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccccCCCCccccCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcccH
No 480
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=31.37 E-value=89 Score=31.68 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 372 YSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSI 413 (820)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~ 413 (820)
|+..|..-.+.|++++|+.++++..+.|+.--..+|..-++.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~~ 301 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVKG 301 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhhc
No 481
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=31.24 E-value=2.8e+02 Score=22.34 Aligned_cols=69 Identities=17% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 003433 246 EAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNL 321 (820)
Q Consensus 246 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 321 (820)
.+.++++.+.+.|+- +......+-.+--..| +.+.|.+++..+. .|.. .|...+.++...|.-+-|.++
T Consensus 20 ~~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g-~~~~ar~LL~~L~-rg~~----aF~~Fl~aLreT~~~~LA~el 88 (88)
T cd08819 20 KTRDVCDKCLEQGLL-TEEDRNRIEAATENHG-NESGARELLKRIV-QKEG----WFSKFLQALRETEHHELAREL 88 (88)
T ss_pred hHHHHHHHHHhcCCC-CHHHHHHHHHhccccC-cHHHHHHHHHHhc-cCCc----HHHHHHHHHHHcCchhhhhcC
No 482
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.21 E-value=8.4e+02 Score=27.83 Aligned_cols=176 Identities=11% Similarity=-0.047 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-----ccch
Q 003433 621 RCRQEILCILGVFQKMHKLKIKPNVVT--FSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-----RDNI 693 (820)
Q Consensus 621 ~~~~~~~~Al~~~~~m~~~~~~Pd~~~--~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 693 (820)
.+..++.-+.+++.+-...+..-+.-+ ....-.-+....++.+-...+..-.+.--+.-..++++++.. +..+
T Consensus 290 ~~~~~~~~i~~~~~~~~~~~~g~~~~sr~l~~~~~~L~~dE~I~e~F~~~~t~~~lTkE~~~~iH~iLWn~A~~~F~~~~ 369 (872)
T KOG4814|consen 290 IVCLDYLLINKLNSKNDSKFLGKAICSRFLITTQSKLMNDEEIAESFENFSTQMELTKEAISCIHTLLWNTAKKLFKMEK 369 (872)
T ss_pred hHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q ss_pred HHHHHHHHHHHhhcCCCcc-----hhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhhhh--hhhccchhhhhcchhHHHH
Q 003433 694 WVQALSLFDEVKLMDSSTA-----SAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWEN--VWSESCLDLHLMSSGAARA 766 (820)
Q Consensus 694 ~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~g~~~~ 766 (820)
|..+.++|+..++--|.++ ......|.-+|.+..+.|.|.+++.++-+-...+. .....+.-+|....-.|..
T Consensus 370 Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~ 449 (872)
T KOG4814|consen 370 YVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALT 449 (872)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHH
Q ss_pred HHHHHHHHHHH------HhhcCCCCChhHHHHHHHh
Q 003433 767 MVHAWLLNIHS------IVFEGHELPKLLRYMIICL 796 (820)
Q Consensus 767 ~~~~w~~~~~~------~~~~g~~~~~~~~~~~~~~ 796 (820)
++-.-++.+-. .+-.|..+|+-.-.+.|.+
T Consensus 450 ~~~~~~s~~~~~~~~~~~l~~~~~~PTt~lsv~~~l 485 (872)
T KOG4814|consen 450 CLQKIKSSEDEKSTDALILAVAECKPTTDLSVQGLL 485 (872)
T ss_pred HHHHHHhhhcccccchhHHHHhcCCCchHHHHHHHH
No 483
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=31.00 E-value=3e+02 Score=25.82 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCC--CHHHHHHHHH-----HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCc
Q 003433 490 YKEAMQIFREFKQAGLKA--DVVLYSALID-----ALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSAT 559 (820)
Q Consensus 490 ~~~A~~~~~~m~~~~~~p--~~~~~~~li~-----~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 559 (820)
++.|+.+|+.+.+.-..| -......+|. .|.+.|.+++|.+++++... .|+......-+....+..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
No 484
>KOG4425 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.81 E-value=98 Score=32.83 Aligned_cols=93 Identities=19% Similarity=0.235 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCC------------------------CC
Q 003433 2 ASTPPHCSITATKPYQNHQYPHNHLKNNHHRQSHHPSSRPHWTSHKVSLTKPPL------------------------SP 57 (820)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~------------------------~p 57 (820)
|||.|.||+.|.--..+--.|+.-++.-.|.-++||+.--.-+||-+.+..|-. -+
T Consensus 61 pspsp~pp~~pettltpivlp~kkqriek~k~~~ppp~~ap~tshtp~pve~llsrkkqimmehssldhiqfklieiela 140 (900)
T KOG4425|consen 61 PSPSPEPPLAPETTLTPIVLPHKKQRIEKHKGPLPPPNAAPTTSHTPGPVEPLLSRKKQIMMEHSSLDHIQFKLIEIELA 140 (900)
T ss_pred CCCCCCCCCCCccccCccccchhhhHhhcCCCCCCCCccCCccCCCCCchHHHHhhhhhhhhccccchhhhhheeeeecC
Q ss_pred CCCCCCCCCCCCCCCCC----------CCCCCCCCCCCCCCCCCCCC
Q 003433 58 SPRNAPKPAATSTTVAP----------NPKPFHSLSPLPSSKSELAP 94 (820)
Q Consensus 58 ~p~~~~~p~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 94 (820)
+++++.-.++......+ +.-.++.++......+..+|
T Consensus 141 ak~~kaeaaa~aaaa~eqkdekaeevenret~p~psts~~~ssl~sp 187 (900)
T KOG4425|consen 141 AKPPKAEAAAGAAAAAEQKDEKAEEVENRETLPAPSTSALFSSLFSP 187 (900)
T ss_pred CCCCcccccccccccccccchhhhhhhcccCCCCCchhhhhhhccCC
No 485
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=30.72 E-value=7.1e+02 Score=27.04 Aligned_cols=120 Identities=13% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccch
Q 003433 519 LCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTD 598 (820)
Q Consensus 519 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (820)
+...|++.+|+..|+.++ +...+-......+.+++.+++..+-++
T Consensus 214 ~~t~gKF~eA~~~Fr~iL----------~~i~l~vv~~~~E~~e~~eli~icrEY------------------------- 258 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSIL----------HSIPLLVVESREEEDEAKELIEICREY------------------------- 258 (422)
T ss_dssp HHHTT-HHHHHHHHHHHH----------HHHHC--BSSCHHHHHHHHHHHHHHHH-------------------------
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhheeeecCHHHHHHHHHHHHHHHHH-------------------------
Q ss_pred HHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHhhcC
Q 003433 599 NQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPN---VVTFSAILNACSRCNSFEDASMLLEELRLFD 675 (820)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd---~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~ 675 (820)
.+.+--++....+..+ ..--+.=+.+|..+-+++-.-.++---.
T Consensus 259 ------------------------------ilgl~iEl~Rr~l~~~~~~~~kR~lELAAYFThc~LQp~H~~LaLr~--- 305 (422)
T PF06957_consen 259 ------------------------------ILGLSIELERRELPKDPVEDQKRNLELAAYFTHCKLQPSHLILALRS--- 305 (422)
T ss_dssp ------------------------------HHHHHHHHHHCTS-TTTHHHHHHHHHHHHHHCCS---HHHHHHHHHH---
T ss_pred ------------------------------HHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCcHHHHHHHHHH---
Q ss_pred CchhHHHHHHHhccccchHHHHHHHHHHHhhcCCCcchh
Q 003433 676 NQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASA 714 (820)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 714 (820)
.+-..++.+++.-|-.+.+++++++|.....
T Consensus 306 --------AM~~~~K~KNf~tAa~FArRLLel~p~~~~a 336 (422)
T PF06957_consen 306 --------AMSQAFKLKNFITAASFARRLLELNPSPEVA 336 (422)
T ss_dssp --------HHHHCCCTTBHHHHHHHHHHHHCT--SCHHH
T ss_pred --------HHHHHHHhccHHHHHHHHHHHHHcCCCHHHH
No 486
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=30.49 E-value=4.7e+02 Score=30.29 Aligned_cols=93 Identities=12% Similarity=0.030 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCcccCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCC
Q 003433 3 STPPHCSITATKPYQNHQYPHNHLKNNHHRQSHH---PSSRPHWTSHKVSLT---KPPLSPSPRNAPKPAATSTTVAPNP 76 (820)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~pp~~p~p~~~~~p~~~~~~~~~~~ 76 (820)
++-|.|++.....+..|+...+.+.++..++..+ +.++|+...+.++++ ..++.++|+--.+|...++..++-.
T Consensus 573 ~~~~~Ppp~g~~~~~~P~~~pg~P~~~~~Ppa~p~~~~~ppPgf~PnpPpP~~~Pg~np~~pPpg~~pP~~pPp~~Ppm~ 652 (894)
T KOG0132|consen 573 PPDPAPPPVGRPRPQKPPPRPGAPIPSGEPPAFPGPMWHPPPGFVPNPPPPPLRPGYNPYPPPPGFMPPTSPPPGQPPMG 652 (894)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCC
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 003433 77 KPFHSLSPLPSSKSELAPD 95 (820)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ 95 (820)
.+....++.........+.
T Consensus 653 ~pp~~pppp~~p~~~~~Pp 671 (894)
T KOG0132|consen 653 IPPQTPPPPMFPQGFNAPP 671 (894)
T ss_pred CCCCCCCCCCCccCCCCCC
No 487
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=30.40 E-value=2.5e+02 Score=24.15 Aligned_cols=75 Identities=27% Similarity=0.266 Sum_probs=0.0
Q ss_pred HhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH----cccccCChhHHHHHHH----HHHHhcCChHHHHHHHHH
Q 003433 147 KKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVK----REERKNDQGKLASAMI----SILGRLGKVDLAKNIFET 218 (820)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~ 218 (820)
..|...+.+.-.+..|..++...|+|++++.--+.++. ++....+..+.|...+ .++-..|+.++|.+.|+.
T Consensus 46 EaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 46 EAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp S---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Q ss_pred HHH
Q 003433 219 ALN 221 (820)
Q Consensus 219 ~~~ 221 (820)
..+
T Consensus 126 agE 128 (144)
T PF12968_consen 126 AGE 128 (144)
T ss_dssp HHH
T ss_pred HHH
No 488
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=30.36 E-value=5.4e+02 Score=25.36 Aligned_cols=186 Identities=12% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003433 375 MIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIY-AKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQG 453 (820)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 453 (820)
++..+-+.|+++++.+.++++...+...+..-.+.|..+| ...|....+++++..+....-.........++.-|.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk--- 83 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK--- 83 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH---
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH---
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHH
Q 003433 454 KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSAL-IDALCKNGLVESAVSLL 532 (820)
Q Consensus 454 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~ 532 (820)
.++-.++... -..+...+=..+.....-.++.-+|.+|.. |..-|-+= ...-.+..-.+.|.+.|
T Consensus 84 -----~kie~EL~~~----C~eii~lId~~Lip~~~~~eskvfy~Kmkg-----DyyRYlaE~~~~~~~~~~~~~a~~aY 149 (236)
T PF00244_consen 84 -----KKIEDELIDI----CNEIIRLIDKSLIPSATSPESKVFYYKMKG-----DYYRYLAEFDSGDEKKEAAEKALEAY 149 (236)
T ss_dssp -----HHHHHHHHHH----HHHHHHHHHHTCHHHS-SHHHHHHHHHHHH-----HHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHH----HHHHHHHHHHHHhccccchhHHHHHHHHhc-----cccccccccccchhhHHHHHHHHHhh
Q ss_pred HHHHHC---CCCCCHHHHHHHHHHH-----hhcCchhhhHHhHHHHhhhhhhh
Q 003433 533 DEMTKE---GIRPNVVTYNSIIDAF-----GRSATTECTVDDVERDLGKQKES 577 (820)
Q Consensus 533 ~~m~~~---g~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~l~~~~~~ 577 (820)
+++.+. .+.|...++..|+-.| --.|+.++|+++.++++......
T Consensus 150 ~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~ 202 (236)
T PF00244_consen 150 EEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISE 202 (236)
T ss_dssp HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHG
T ss_pred hhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
No 489
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=30.20 E-value=3.1e+02 Score=29.52 Aligned_cols=118 Identities=12% Similarity=0.050 Sum_probs=0.0
Q ss_pred HhccCCcchHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHH---------------HHHcccccCChhHHHH
Q 003433 133 TAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAF---------------AVKREERKNDQGKLAS 197 (820)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---------------~~~~~~~~~~~~~~~~ 197 (820)
....+...+-...+.....+.++......++..+....+..+-++.... ..+.-+.. ...
T Consensus 52 ~~~~~~~~~e~~~l~~~~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYF-----Sli 126 (404)
T PF10255_consen 52 SKLKKKTEEEIQLLKENNPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYF-----SLI 126 (404)
T ss_pred hhccCCCHHHHHHHHhhccCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHH-----HHH
Q ss_pred HHHHHHHhcCChHHHHHHHHHH-------HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003433 198 AMISILGRLGKVDLAKNIFETA-------LNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMK 255 (820)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 255 (820)
.|++..+-.|++..|+++++.+ ...-..-.+.++..++-+|.-.+++.+|++.|....
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.04 E-value=1.1e+03 Score=29.02 Aligned_cols=160 Identities=12% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccc------------------------cCCh--hHHHHHHHHHHHhcCChHHHHHH
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREER------------------------KNDQ--GKLASAMISILGRLGKVDLAKNI 215 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~------------------------~~~~--~~~~~~l~~~~~~~g~~~~A~~~ 215 (820)
+..+|...|...+|+.+|..+...-.. .++. ...|..+++.+-+.+-.+.+.++
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQl 1005 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQL 1005 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHH
Q ss_pred HHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHH-----------
Q 003433 216 FETALNEGYGNT---VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFK----------- 281 (820)
Q Consensus 216 ~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~----------- 281 (820)
-..+++.-...+ .-+++.+.+.....|.+-+|...+-.-.. ......+...++..++..| .++
T Consensus 1006 A~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRqlvivLfecg-~l~~L~~fpfigl~ 1082 (1480)
T KOG4521|consen 1006 AVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQLVIVLFECG-ELEALATFPFIGLE 1082 (1480)
T ss_pred HHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHhcc-chHHHhhCCccchH
Q ss_pred -HHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 003433 282 -HVVE-IFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNE 324 (820)
Q Consensus 282 -~A~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 324 (820)
+... +++..-+...--....|+.|-..+...+++.+|-.+.-+
T Consensus 1083 ~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYE 1127 (1480)
T KOG4521|consen 1083 QEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYE 1127 (1480)
T ss_pred HHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHH
No 491
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=29.65 E-value=97 Score=20.39 Aligned_cols=29 Identities=10% Similarity=-0.007 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhcCchHHHHHHHHHhhh
Q 003433 713 SAFYNALTDMLWHFGQKRGAQLVVLEGKR 741 (820)
Q Consensus 713 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 741 (820)
+.+|..||++-...++++.|..-++++++
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHH
No 492
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=29.45 E-value=2.3e+02 Score=30.58 Aligned_cols=80 Identities=13% Similarity=0.060 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003433 1 MASTPPHCSITATKPYQNHQYPHNHLKNNHHRQSHHPSSRPHWTSHKVSLTKPPLSPSPRNAPKPAATSTTVAPNPKPFH 80 (820)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~~p~p~~~~~p~~~~~~~~~~~~~~~ 80 (820)
.|+-.||-+|.+|++.+.-...+.+..+++|..++.|+..| +|-.+++...++-+|..+-|++..-..|..
T Consensus 421 ~~~~~~ps~p~tPSs~~ads~n~a~~s~a~h~l~~kp~~h~---------tP~~~~q~~~p~~ppk~~kp~s~S~~~pNm 491 (661)
T KOG2070|consen 421 VPSHTLPSHPVTPSSKHADSKNPAPLSPAYHTLPHKPSHHG---------TPHTTIQNWGPLEPPKTPKPWSLSCLRPNM 491 (661)
T ss_pred ccccCCCCCCCCcccccccCCCCCCCCcccCcCCCCCCCCC---------CCCCCccccCCCCCCCCCCCcchhhcCCCc
Q ss_pred CCCCCCCCC
Q 003433 81 SLSPLPSSK 89 (820)
Q Consensus 81 ~~~~~~~~~ 89 (820)
-..+.-...
T Consensus 492 Kfa~pL~~s 500 (661)
T KOG2070|consen 492 KFAPPLRPS 500 (661)
T ss_pred ccCCCCCcc
No 493
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=29.41 E-value=4.6e+02 Score=29.85 Aligned_cols=101 Identities=18% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003433 479 TLIDVYSKGGLYKEAMQIFREFKQ--AGLKADVVLYSALIDALCKNGL------VESAVSLLDEMTKEGIRPNVVTYNSI 550 (820)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~g~~p~~~~~~~l 550 (820)
+|..+|...|++..+.++++.+.. .|-+.=...||..|+...+.|. .+.|.+++++..-.| |..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~---d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNG---DSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCC---cchHHHHH
Q ss_pred HHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHH
Q 003433 551 IDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVF 605 (820)
Q Consensus 551 l~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (820)
+.+-...-+-.-+.-++.+.+. ...|++++.+
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~-----------------------~s~ngv~di~ 141 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH-----------------------RSANGVIDIL 141 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH-----------------------hhhhhHHHHH
No 494
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=29.01 E-value=2.5e+02 Score=27.79 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003433 2 ASTPPHCSITATKPYQNHQYPHNHLKNNHHRQSHHPSSRPHWTSHKVSLTKPPLSPSPRNAPKPAATSTTVAP 74 (820)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~~p~p~~~~~p~~~~~~~~~ 74 (820)
|.|+.|++.++.++.+.++...+.+.+.+..++-- +..+.|+++..|...++++..+..+.|
T Consensus 43 PtPt~PPtt~~aPP~p~~P~atPaP~appt~~PAd-----------PnA~~Pp~PadPna~~pppadpnap~P 104 (297)
T PF07174_consen 43 PTPTAPPTTTTAPPAPPPPAATPAPTAPPTPPPAD-----------PNAPPPPPPADPNAAPPPPADPNAPPP 104 (297)
T ss_pred CCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCC-----------CCCCCCCCCCCCCCCCCCCCCCCCCCC
No 495
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=28.36 E-value=6.2e+02 Score=25.40 Aligned_cols=191 Identities=14% Similarity=0.067 Sum_probs=0.0
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhCCC
Q 003433 239 GRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN----GVQPDRITFNSLLAVCSRGGL 314 (820)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~----g~~p~~~~~~~ll~~~~~~g~ 314 (820)
.+.+++++|++++..-.. .+.+.+ +...|-++...+++- +...|......++..+...+.
T Consensus 1 v~~kky~eAidLL~~Ga~---------------~ll~~~-Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~ 64 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSGAL---------------ILLKHG-QYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPP 64 (260)
T ss_dssp HHTT-HHHHHHHHHHHHH---------------HHHHTT--HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-T
T ss_pred CccccHHHHHHHHHHHHH---------------HHHHCC-CcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q ss_pred HH-HHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003433 315 WE-AARNLFNEMVHR-----GIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDA 388 (820)
Q Consensus 315 ~~-~A~~~~~~~~~~-----g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 388 (820)
-+ +-.++.+.+++- .-.-|......+...|.+.|++.+|+..|-.-... +...+..++......|...++
T Consensus 65 ~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~----~~~~~~~ll~~~~~~~~~~e~ 140 (260)
T PF04190_consen 65 EEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDP----SAFAYVMLLEEWSTKGYPSEA 140 (260)
T ss_dssp T-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HH----HHHHHHHHHHHHHHHTSS--H
T ss_pred CcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCCh----hHHHHHHHHHHHHHhcCCcch
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------------CCCCCHHHHHHH--HHHHHhcC
Q 003433 389 LNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS-------------GIRKDAVTYNAL--LGGYGKQG 453 (820)
Q Consensus 389 ~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~~~~~~l--i~~~~~~g 453 (820)
..-....+-.|.-.++...|...++...+. ++.++....|-+ +-.-++.+
T Consensus 141 ---------------dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~ 205 (260)
T PF04190_consen 141 ---------------DLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERD 205 (260)
T ss_dssp ---------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT
T ss_pred ---------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcC
Q ss_pred CHHHHHHHHHH
Q 003433 454 KYDEVRRMFEQ 464 (820)
Q Consensus 454 ~~~~A~~~~~~ 464 (820)
+.+.-..+.++
T Consensus 206 ~~~~F~~L~~~ 216 (260)
T PF04190_consen 206 NLPLFKKLCEK 216 (260)
T ss_dssp -HHHHHHHHHH
T ss_pred cHHHHHHHHHH
No 496
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=28.29 E-value=6.7e+02 Score=25.81 Aligned_cols=190 Identities=11% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcC-CHH---HHHHH-HHH---------chhCCCCCC--
Q 003433 306 LAVCSRGGLWEAARNLFNEMVHR-GIDQDIFTYNTLLDAICKGA-QMD---LAFEI-MAE---------MPAKNISPN-- 368 (820)
Q Consensus 306 l~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~g-~~~---~A~~~-~~~---------m~~~g~~p~-- 368 (820)
+-.+++.|..+ ...+++-+... .-+.+..+|..++..+.... .+. ..... |+. +.+.|..+.
T Consensus 45 ~~al~~~g~~~-~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 123 (324)
T PF11838_consen 45 LFALARAGRLS-YSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPG 123 (324)
T ss_dssp HHHHHHTTSS--HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--
T ss_pred HHHHHHcCCCC-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Q ss_pred HHHHHHHHHHH-HHcCC-----HHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003433 369 VVTYSTMIDGY-AKAGR-----LDDALNMFSEMKFLGI----GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKD 438 (820)
Q Consensus 369 ~~~~~~li~~~-~~~g~-----~~~A~~~~~~m~~~~~----~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 438 (820)
......++... ....- .++|.+.|++....+. ..+......++....+.|..+.-..+++.... ..+
T Consensus 124 ~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~ 200 (324)
T PF11838_consen 124 EDHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STS 200 (324)
T ss_dssp SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TST
T ss_pred ccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCC
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHH
Q 003433 439 AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVY-SKGGLYKEAMQIFRE 499 (820)
Q Consensus 439 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~ 499 (820)
......++.+++...+.+...++++.+...+..++......+.... ...-..+.+.+.+..
T Consensus 201 ~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 201 PEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 497
>PRK09857 putative transposase; Provisional
Probab=28.13 E-value=4.7e+02 Score=26.82 Aligned_cols=113 Identities=10% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003433 358 AEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK 437 (820)
Q Consensus 358 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 437 (820)
+++.+. .....-.++.-+.+..++.+-...+..+.......+.. +..++....+.++.++-.++++.+.+. .+.
T Consensus 165 eei~~~----~~l~~l~ll~k~i~~~dl~~~~~~l~~ll~~~~~~~~~-~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~ 238 (292)
T PRK09857 165 DEIMQH----RRMALLELIQKHIRQRDLMGLVEQMACLLSSGYANDRQ-IKGLFNYILQTGDAVRFNDFIDGVAER-SPK 238 (292)
T ss_pred HHHHhh----hHHHHHHHHHHHcCcHhHHHHHHHHHHHHHhccCCHHH-HHHHHHHHhhccccchHHHHHHHHHHh-Ccc
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003433 438 DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLT 476 (820)
Q Consensus 438 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 476 (820)
......++..-+.+.|..+++.++..+|+..|+..+...
T Consensus 239 ~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~~I~ 277 (292)
T PRK09857 239 HKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLADIM 277 (292)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
No 498
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=27.50 E-value=3.8e+02 Score=22.64 Aligned_cols=79 Identities=19% Similarity=0.181 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003433 454 KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLD 533 (820)
Q Consensus 454 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 533 (820)
..++|..+.+-+...+. -...+--+-+..+.+.|+|++| -..-.....||...|-+| +-.+.|.-+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A----Ll~~~~~~~pdL~p~~AL--~a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA----LLLPQCHCYPDLEPWAAL--CAWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH----HHHHTTS--GGGHHHHHH--HHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH----HHhcccCCCccHHHHHHH--HHHhhccHHHHHHHHH
Q ss_pred HHHHCC
Q 003433 534 EMTKEG 539 (820)
Q Consensus 534 ~m~~~g 539 (820)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
No 499
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=27.41 E-value=6.8e+02 Score=25.58 Aligned_cols=209 Identities=10% Similarity=0.058 Sum_probs=0.0
Q ss_pred ccCCcchHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHH
Q 003433 135 FARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKN 214 (820)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 214 (820)
+..+....+..++.++....+.+.+......+...-+.-+..=.-.-+.+.+.....-......--..-.........++
T Consensus 9 F~~~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~ 88 (291)
T PF10475_consen 9 FDEDFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRR 88 (291)
T ss_pred cCCCCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Q 003433 215 IFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNG 294 (820)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g 294 (820)
-+..+.+. -...-..++..+.+.+++.+..+.++.+. .+..-...+..+...| ++..|++++.+..+
T Consensus 89 ~L~~~~~~----~~~~~L~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~-dy~~Al~li~~~~~-- 155 (291)
T PF10475_consen 89 NLKSADEN----LTKSGLEILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEG-DYPGALDLIEECQQ-- 155 (291)
T ss_pred HHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH--
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003433 295 VQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGI-----DQDIFTYNTLLDAICKGAQMDLAFEIMAE 359 (820)
Q Consensus 295 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~-----~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 359 (820)
-...+..+--.-.-..++++-....+.+.+..+ ..|...|..+..+|.-.|+.+.+.+-+..
T Consensus 156 ---~l~~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 156 ---LLEELKGYSCVRHLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred ---HHHhcccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 500
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=27.31 E-value=8.1e+02 Score=26.39 Aligned_cols=190 Identities=15% Similarity=0.224 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHHhcCChHHHHHHHHHH--HHcCCCCCHHHHHHHHHHHHhcCChh-----HHHHHHHHHHhCCCCCC
Q 003433 190 NDQGKLASAMISILGRLGKVDLAKNIFETA--LNEGYGNTVYAFSALISAYGRSGYCQ-----EAISVFNSMKRYNLKPN 262 (820)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~~~~li~~~~~~g~~~-----~A~~~~~~m~~~~~~p~ 262 (820)
++....|..+.+.--++.--++.+++.+.+ .+....+-+.-..++|..||+..+.+ .=+.+++.+....+ |.
T Consensus 52 ~d~l~~wd~iydLp~Q~~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK~Rn~~Y~~d~gWi~lL~pl~~L~l-pr 130 (669)
T KOG3636|consen 52 PNPLDDWDQIYDLPNQCALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYCKKRNMDYIKDIGWITLLEPLLLLNL-PR 130 (669)
T ss_pred CCchhhHHHHhCCchhhHHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhhhccCCcccccccHHHHHHHHHHhcC-Cc
Q ss_pred HHHHHHHHHH--------HHcCCCCHHHHHHHHHHHHH---------CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 003433 263 LVTYNAVIDA--------CGKGGVDFKHVVEIFDDMLR---------NGVQPDRITFNSLLAVCSRGGLWEAARNLFNEM 325 (820)
Q Consensus 263 ~~~~~~ll~~--------~~~~g~~~~~A~~~~~~m~~---------~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 325 (820)
..+||..... |...| +.=...+++-+..+ ..+.||.++.|-+...++..-..+-...+|+-.
T Consensus 131 sd~fN~F~ai~~kYIPkdcrpkg-~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY 209 (669)
T KOG3636|consen 131 SDEFNVFFAITTKYIPKDCRPKG-QIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLY 209 (669)
T ss_pred chhhhhhHhhhhcccCCCCCCCC-ccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q ss_pred HHCCCCCCHHHHHHHHHHH--------HhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHc
Q 003433 326 VHRGIDQDIFTYNTLLDAI--------CKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKA 382 (820)
Q Consensus 326 ~~~g~~~~~~~~~~ll~~~--------~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 382 (820)
.+.+ .|-.+.+.+||-.. .+...-++++++++.|...=-.-|+.-+-+|...|+..
T Consensus 210 ~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqyY~~K 273 (669)
T KOG3636|consen 210 IQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQYYSDK 273 (669)
T ss_pred HhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcccccchhHHHHHHHHhhc
Done!