Query 003433
Match_columns 820
No_of_seqs 906 out of 4368
Neff 10.4
Searched_HMMs 29240
Date Tue Mar 26 01:02:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003433.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003433hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 8E-41 2.8E-45 385.5 42.3 493 155-725 83-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 5.5E-38 1.9E-42 361.9 41.5 478 127-686 89-591 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 7.4E-28 2.5E-32 261.1 46.8 382 162-558 5-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 3.6E-27 1.2E-31 255.7 46.2 377 274-728 10-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 6.1E-29 2.1E-33 274.2 24.8 185 372-556 29-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.6E-28 5.5E-33 270.9 25.9 205 318-522 9-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.3E-23 4.4E-28 236.8 38.0 449 156-684 6-488 (514)
8 2gw1_A Mitochondrial precursor 99.9 2.2E-23 7.6E-28 234.8 39.1 454 194-719 7-489 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 3E-22 1E-26 221.5 43.0 383 146-564 16-445 (450)
10 3fp2_A TPR repeat-containing p 99.9 1.6E-22 5.4E-27 229.3 40.0 458 156-682 25-499 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 2.8E-22 9.5E-27 221.8 40.0 333 132-499 36-405 (450)
12 3fp2_A TPR repeat-containing p 99.9 6.2E-22 2.1E-26 224.4 40.3 426 131-578 34-496 (537)
13 2xm6_A Protein corresponding t 99.9 1.9E-17 6.5E-22 184.9 54.4 400 213-709 27-469 (490)
14 3ieg_A DNAJ homolog subfamily 99.9 1.2E-18 4.3E-23 185.6 40.8 330 156-521 3-352 (359)
15 3ieg_A DNAJ homolog subfamily 99.9 1.7E-18 5.9E-23 184.5 41.8 330 194-558 4-354 (359)
16 2xm6_A Protein corresponding t 99.9 3.2E-17 1.1E-21 183.0 52.6 353 155-540 38-434 (490)
17 1xi4_A Clathrin heavy chain; a 99.8 3E-16 1E-20 182.2 53.8 361 153-572 982-1344(1630)
18 2ooe_A Cleavage stimulation fa 99.8 5E-17 1.7E-21 183.4 45.0 415 152-577 9-496 (530)
19 1xi4_A Clathrin heavy chain; a 99.8 9.9E-16 3.4E-20 177.9 54.6 381 195-665 987-1375(1630)
20 3hym_B Cell division cycle pro 99.8 7.8E-18 2.7E-22 177.2 33.1 291 154-454 20-320 (330)
21 3hym_B Cell division cycle pro 99.8 6.6E-18 2.2E-22 177.8 31.9 290 262-560 21-321 (330)
22 4g1t_A Interferon-induced prot 99.8 1.7E-17 5.7E-22 184.6 36.3 385 299-745 51-462 (472)
23 2ooe_A Cleavage stimulation fa 99.8 1.3E-16 4.4E-21 180.1 43.9 434 179-677 2-495 (530)
24 1fch_A Peroxisomal targeting s 99.8 5.7E-18 1.9E-22 181.5 26.4 308 241-575 38-361 (368)
25 1fch_A Peroxisomal targeting s 99.8 5.9E-18 2E-22 181.4 24.5 306 167-498 36-354 (368)
26 4g1t_A Interferon-induced prot 99.8 1.3E-16 4.3E-21 177.5 34.6 388 227-680 50-465 (472)
27 3cv0_A Peroxisome targeting si 99.8 5.7E-17 1.9E-21 170.4 26.1 268 303-578 25-320 (327)
28 4eqf_A PEX5-related protein; a 99.8 2.3E-17 7.9E-22 176.6 23.4 265 300-571 66-354 (365)
29 4eqf_A PEX5-related protein; a 99.8 5.6E-17 1.9E-21 173.6 24.3 273 158-464 67-352 (365)
30 3cv0_A Peroxisome targeting si 99.7 2.8E-16 9.6E-21 165.0 27.0 278 230-536 23-313 (327)
31 1b89_A Protein (clathrin heavy 99.7 1.2E-16 4.1E-21 167.5 23.1 283 203-530 13-303 (449)
32 1b89_A Protein (clathrin heavy 99.7 5.8E-17 2E-21 169.9 20.5 283 240-567 15-305 (449)
33 3mkr_A Coatomer subunit epsilo 99.7 1.6E-15 5.6E-20 155.8 27.4 221 268-503 39-264 (291)
34 3mkr_A Coatomer subunit epsilo 99.7 1.1E-15 3.7E-20 157.2 25.5 250 204-468 10-264 (291)
35 3spa_A Mtrpol, DNA-directed RN 99.7 3.5E-17 1.2E-21 184.3 11.9 152 403-559 126-287 (1134)
36 3spa_A Mtrpol, DNA-directed RN 99.7 6.3E-17 2.2E-21 182.3 11.5 151 368-523 126-286 (1134)
37 3uq3_A Heat shock protein STI1 99.6 3.3E-14 1.1E-18 143.3 26.2 224 300-537 6-235 (258)
38 3e4b_A ALGK; tetratricopeptide 99.6 1.4E-14 4.7E-19 159.1 23.0 371 162-569 9-417 (452)
39 3uq3_A Heat shock protein STI1 99.6 6.1E-14 2.1E-18 141.4 25.1 230 228-503 5-236 (258)
40 2pl2_A Hypothetical conserved 99.6 3.6E-14 1.2E-18 139.1 22.3 112 453-569 98-210 (217)
41 2h6f_A Protein farnesyltransfe 99.6 1.2E-13 4E-18 146.9 27.5 252 405-725 98-365 (382)
42 2h6f_A Protein farnesyltransfe 99.6 1.3E-13 4.5E-18 146.5 26.0 249 156-415 97-364 (382)
43 3e4b_A ALGK; tetratricopeptide 99.6 6.8E-14 2.3E-18 153.6 24.3 345 198-575 8-389 (452)
44 1ouv_A Conserved hypothetical 99.6 2.2E-12 7.5E-17 131.5 34.0 227 333-577 5-255 (273)
45 2pl2_A Hypothetical conserved 99.6 1.5E-13 5E-18 134.7 23.3 201 331-537 2-213 (217)
46 1ouv_A Conserved hypothetical 99.6 2.5E-12 8.4E-17 131.1 33.1 224 298-539 5-252 (273)
47 4e6h_A MRNA 3'-END-processing 99.6 5.8E-11 2E-15 134.5 44.9 430 141-578 51-575 (679)
48 3u4t_A TPR repeat-containing p 99.6 3.3E-13 1.1E-17 137.4 24.2 237 338-578 7-255 (272)
49 3u4t_A TPR repeat-containing p 99.6 4.8E-13 1.6E-17 136.2 25.3 236 156-398 3-250 (272)
50 2ho1_A Type 4 fimbrial biogene 99.6 1E-12 3.4E-17 132.1 26.5 198 336-537 39-237 (252)
51 2ho1_A Type 4 fimbrial biogene 99.6 1E-12 3.5E-17 132.0 26.6 206 369-578 37-243 (252)
52 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.1E-13 7.2E-18 139.0 20.3 218 279-502 20-243 (275)
53 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.9E-13 6.5E-18 139.3 19.6 248 310-567 16-269 (275)
54 2vq2_A PILW, putative fimbrial 99.5 2.6E-12 9E-17 126.2 27.1 201 334-537 8-210 (225)
55 2q7f_A YRRB protein; TPR, prot 99.5 4.5E-13 1.5E-17 133.7 21.7 200 334-538 23-222 (243)
56 2vq2_A PILW, putative fimbrial 99.5 2.1E-12 7.2E-17 126.9 26.2 202 299-503 8-211 (225)
57 2q7f_A YRRB protein; TPR, prot 99.5 5.3E-13 1.8E-17 133.2 20.7 209 299-513 23-231 (243)
58 4a1s_A PINS, partner of inscut 99.5 4.9E-13 1.7E-17 145.4 20.5 276 376-742 55-372 (411)
59 3sf4_A G-protein-signaling mod 99.5 5.3E-13 1.8E-17 144.6 20.3 304 227-563 8-366 (406)
60 4e6h_A MRNA 3'-END-processing 99.5 3.9E-10 1.3E-14 127.8 42.5 375 172-576 48-502 (679)
61 4a1s_A PINS, partner of inscut 99.5 8.2E-13 2.8E-17 143.6 19.7 272 304-576 53-375 (411)
62 3sf4_A G-protein-signaling mod 99.5 4.8E-13 1.7E-17 144.9 17.0 307 191-526 7-364 (406)
63 3ro2_A PINS homolog, G-protein 99.5 1.6E-12 5.6E-17 136.4 19.0 30 713-742 303-332 (338)
64 4abn_A Tetratricopeptide repea 99.5 2E-12 6.9E-17 142.8 20.5 221 455-739 84-318 (474)
65 2ond_A Cleavage stimulation fa 99.4 5E-11 1.7E-15 123.7 28.5 189 386-577 81-274 (308)
66 3vtx_A MAMA; tetratricopeptide 99.4 2.5E-11 8.4E-16 115.3 23.8 166 368-537 4-169 (184)
67 3ro2_A PINS homolog, G-protein 99.4 4.4E-12 1.5E-16 133.0 19.7 97 159-255 8-110 (338)
68 3vtx_A MAMA; tetratricopeptide 99.4 2.8E-11 9.4E-16 115.0 23.0 172 403-578 4-175 (184)
69 2ond_A Cleavage stimulation fa 99.4 1.3E-10 4.4E-15 120.6 29.8 218 173-398 33-270 (308)
70 4abn_A Tetratricopeptide repea 99.4 1.6E-11 5.3E-16 135.7 23.7 209 280-495 84-313 (474)
71 3nf1_A KLC 1, kinesin light ch 99.4 1.5E-12 5.3E-17 135.2 14.7 243 439-742 27-307 (311)
72 3ulq_A Response regulator aspa 99.4 9.9E-12 3.4E-16 133.6 19.0 162 305-466 109-291 (383)
73 3ulq_A Response regulator aspa 99.4 4E-11 1.4E-15 128.8 23.6 302 166-502 22-367 (383)
74 3nf1_A KLC 1, kinesin light ch 99.4 5.8E-12 2E-16 130.7 14.7 134 157-291 28-180 (311)
75 1hz4_A MALT regulatory protein 99.3 1.2E-09 4.2E-14 116.6 28.4 271 160-431 18-320 (373)
76 1hz4_A MALT regulatory protein 99.3 8.4E-10 2.9E-14 117.9 26.4 269 307-575 22-324 (373)
77 4i17_A Hypothetical protein; T 99.3 8.3E-10 2.8E-14 108.8 23.7 213 475-723 8-224 (228)
78 3as5_A MAMA; tetratricopeptide 99.3 8E-10 2.7E-14 104.4 22.6 163 335-501 9-171 (186)
79 3q15_A PSP28, response regulat 99.3 6.3E-10 2.2E-14 119.2 24.0 163 336-502 184-364 (378)
80 3as5_A MAMA; tetratricopeptide 99.3 5.6E-10 1.9E-14 105.5 21.0 166 407-576 11-176 (186)
81 4gyw_A UDP-N-acetylglucosamine 99.2 2.5E-10 8.7E-15 131.0 21.1 163 370-536 10-172 (723)
82 3q15_A PSP28, response regulat 99.2 1.7E-09 5.7E-14 115.8 26.1 231 304-538 106-365 (378)
83 4gyw_A UDP-N-acetylglucosamine 99.2 4E-10 1.4E-14 129.4 22.0 166 333-502 8-173 (723)
84 3edt_B KLC 2, kinesin light ch 99.2 2.1E-10 7.2E-15 116.8 17.2 231 486-741 13-280 (283)
85 4i17_A Hypothetical protein; T 99.2 2.3E-09 7.7E-14 105.6 21.8 191 335-537 8-208 (228)
86 1qqe_A Vesicular transport pro 99.1 2.7E-09 9.2E-14 109.6 18.8 163 413-575 46-230 (292)
87 3edt_B KLC 2, kinesin light ch 99.1 8.4E-10 2.9E-14 112.3 14.4 156 311-466 13-196 (283)
88 3qky_A Outer membrane assembly 99.1 9.3E-09 3.2E-13 103.6 21.9 210 473-733 14-252 (261)
89 1qqe_A Vesicular transport pro 99.1 1E-08 3.5E-13 105.2 20.9 97 265-362 119-227 (292)
90 3dra_A Protein farnesyltransfe 99.0 2.3E-07 8E-12 94.3 28.7 221 169-397 46-286 (306)
91 3mv2_B Coatomer subunit epsilo 99.0 7.1E-08 2.4E-12 96.9 24.3 143 283-430 85-237 (310)
92 3urz_A Uncharacterized protein 99.0 1.2E-08 4.1E-13 98.7 17.9 172 156-336 4-192 (208)
93 3qky_A Outer membrane assembly 99.0 1.2E-08 4E-13 102.9 18.1 216 153-388 12-251 (261)
94 2uy1_A Cleavage stimulation fa 99.0 6.6E-07 2.3E-11 98.4 33.2 241 315-573 153-413 (493)
95 3mv2_B Coatomer subunit epsilo 99.0 1.2E-07 4.1E-12 95.3 24.3 184 388-578 85-287 (310)
96 3urz_A Uncharacterized protein 99.0 2.4E-08 8.1E-13 96.6 18.8 135 410-550 60-196 (208)
97 2fo7_A Synthetic consensus TPR 99.0 3.9E-08 1.3E-12 86.9 18.5 123 411-536 8-130 (136)
98 2fo7_A Synthetic consensus TPR 99.0 3.6E-08 1.2E-12 87.1 18.1 130 371-503 3-132 (136)
99 2pzi_A Probable serine/threoni 99.0 7.2E-09 2.5E-13 119.7 16.8 153 167-327 402-562 (681)
100 4ga2_A E3 SUMO-protein ligase 98.9 2.5E-09 8.4E-14 97.4 9.8 118 624-744 11-131 (150)
101 3rjv_A Putative SEL1 repeat pr 98.9 9.3E-08 3.2E-12 92.7 20.3 162 333-503 17-197 (212)
102 2pzi_A Probable serine/threoni 98.9 2.2E-08 7.5E-13 115.6 18.3 177 380-563 402-587 (681)
103 3rjv_A Putative SEL1 repeat pr 98.9 1.5E-07 5E-12 91.3 20.7 176 352-539 4-198 (212)
104 2yhc_A BAMD, UPF0169 lipoprote 98.9 1E-07 3.5E-12 93.4 19.6 189 155-365 3-215 (225)
105 4ga2_A E3 SUMO-protein ligase 98.9 9.2E-09 3.1E-13 93.6 10.9 145 163-314 4-149 (150)
106 3dra_A Protein farnesyltransfe 98.9 7.8E-07 2.7E-11 90.4 26.2 218 280-502 49-286 (306)
107 2r5s_A Uncharacterized protein 98.9 2.4E-08 8.2E-13 93.7 13.4 61 159-222 9-69 (176)
108 2uy1_A Cleavage stimulation fa 98.8 4.1E-06 1.4E-10 92.1 32.7 345 170-537 28-412 (493)
109 3qou_A Protein YBBN; thioredox 98.8 7.5E-08 2.6E-12 98.3 16.7 166 401-572 114-283 (287)
110 3gyz_A Chaperone protein IPGC; 98.8 2.9E-08 9.9E-13 89.9 12.0 103 641-744 31-135 (151)
111 2r5s_A Uncharacterized protein 98.8 4E-08 1.4E-12 92.1 13.3 158 410-571 12-171 (176)
112 4gco_A Protein STI-1; structur 98.8 2.3E-08 7.7E-13 87.8 10.7 104 641-745 8-113 (126)
113 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.4E-07 8.1E-12 90.8 18.8 204 299-538 4-213 (225)
114 3qou_A Protein YBBN; thioredox 98.8 1.5E-07 5.2E-12 96.0 18.0 164 298-466 116-282 (287)
115 3q7a_A Farnesyltransferase alp 98.8 3.4E-06 1.2E-10 86.5 27.7 223 166-396 64-329 (349)
116 2ifu_A Gamma-SNAP; membrane fu 98.8 9.8E-08 3.4E-12 98.6 15.8 157 378-536 45-222 (307)
117 2vsy_A XCC0866; transferase, g 98.8 2.1E-07 7.2E-12 105.4 19.5 155 347-505 2-159 (568)
118 2vsy_A XCC0866; transferase, g 98.8 1.7E-07 5.8E-12 106.2 18.7 154 312-469 2-158 (568)
119 2ifu_A Gamma-SNAP; membrane fu 98.7 1.7E-07 5.8E-12 96.8 16.9 120 301-425 118-253 (307)
120 2c2l_A CHIP, carboxy terminus 98.7 3.4E-07 1.2E-11 93.0 18.5 102 473-577 3-105 (281)
121 3dss_A Geranylgeranyl transfer 98.7 9E-06 3.1E-10 83.0 27.1 135 416-554 41-189 (331)
122 2vgx_A Chaperone SYCD; alterna 98.7 5.1E-08 1.7E-12 88.3 9.0 110 632-744 9-120 (148)
123 3q7a_A Farnesyltransferase alp 98.7 1.2E-05 4E-10 82.5 27.1 170 280-454 70-257 (349)
124 4gco_A Protein STI-1; structur 98.6 7.8E-07 2.7E-11 77.8 14.7 108 157-269 14-121 (126)
125 3u3w_A Transcriptional activat 98.6 4.9E-06 1.7E-10 85.1 22.9 91 376-466 82-182 (293)
126 1p5q_A FKBP52, FK506-binding p 98.6 1E-07 3.4E-12 99.8 10.2 117 623-742 160-294 (336)
127 1hh8_A P67PHOX, NCF-2, neutrop 98.6 3.1E-06 1.1E-10 81.7 19.9 127 336-468 8-150 (213)
128 3u3w_A Transcriptional activat 98.6 9.3E-06 3.2E-10 83.0 24.1 160 306-465 82-263 (293)
129 2qfc_A PLCR protein; TPR, HTH, 98.6 7.8E-06 2.7E-10 83.5 23.2 98 476-573 157-266 (293)
130 1hh8_A P67PHOX, NCF-2, neutrop 98.6 3.3E-06 1.1E-10 81.6 18.9 126 372-503 9-150 (213)
131 2xcb_A PCRH, regulatory protei 98.6 2E-07 6.9E-12 83.7 9.5 110 632-744 6-117 (142)
132 1a17_A Serine/threonine protei 98.5 2.7E-06 9.3E-11 78.2 17.3 93 408-502 17-109 (166)
133 3dss_A Geranylgeranyl transfer 98.5 3.2E-05 1.1E-09 79.0 26.5 177 163-347 36-240 (331)
134 4gcn_A Protein STI-1; structur 98.5 2.4E-07 8.3E-12 81.3 9.3 99 645-743 8-113 (127)
135 4f3v_A ESX-1 secretion system 98.5 1.8E-06 6.1E-11 85.6 16.3 189 168-363 18-237 (282)
136 3upv_A Heat shock protein STI1 98.5 5.6E-07 1.9E-11 78.7 11.1 98 645-743 4-102 (126)
137 1a17_A Serine/threonine protei 98.5 3.7E-06 1.3E-10 77.3 17.1 129 370-501 14-144 (166)
138 2qfc_A PLCR protein; TPR, HTH, 98.5 7.7E-06 2.6E-10 83.6 21.1 169 368-537 74-265 (293)
139 4f3v_A ESX-1 secretion system 98.5 7.1E-06 2.4E-10 81.3 19.7 51 311-362 18-75 (282)
140 2c2l_A CHIP, carboxy terminus 98.5 8.7E-07 3E-11 90.0 13.5 93 159-255 7-99 (281)
141 3gyz_A Chaperone protein IPGC; 98.5 8.4E-07 2.9E-11 80.2 11.5 97 156-256 36-132 (151)
142 1na0_A Designed protein CTPR3; 98.5 5.7E-06 2E-10 71.5 16.6 59 477-536 46-104 (125)
143 1p5q_A FKBP52, FK506-binding p 98.5 3.3E-07 1.1E-11 95.8 9.6 151 170-326 127-292 (336)
144 1na0_A Designed protein CTPR3; 98.5 6.3E-06 2.1E-10 71.2 16.3 26 476-501 79-104 (125)
145 1hxi_A PEX5, peroxisome target 98.5 6.2E-07 2.1E-11 77.8 9.4 95 648-743 20-115 (121)
146 3sz7_A HSC70 cochaperone (SGT) 98.4 8.8E-07 3E-11 81.7 11.0 100 644-744 10-110 (164)
147 3gw4_A Uncharacterized protein 98.4 1.5E-06 5.2E-11 83.1 12.9 26 548-573 151-176 (203)
148 2e2e_A Formate-dependent nitri 98.4 1.6E-06 5.5E-11 81.0 12.3 120 416-538 22-144 (177)
149 3gw4_A Uncharacterized protein 98.4 1.5E-06 5.1E-11 83.1 12.4 157 167-327 3-175 (203)
150 2vyi_A SGTA protein; chaperone 98.4 6.3E-06 2.1E-10 71.9 15.4 60 476-536 48-107 (131)
151 2lni_A Stress-induced-phosphop 98.4 4.9E-06 1.7E-10 73.0 14.3 26 440-465 51-76 (133)
152 3q49_B STIP1 homology and U bo 98.4 2.2E-06 7.4E-11 76.0 11.8 100 644-744 8-108 (137)
153 2e2e_A Formate-dependent nitri 98.4 1.4E-06 4.8E-11 81.4 11.0 123 166-294 20-145 (177)
154 2vyi_A SGTA protein; chaperone 98.4 5.5E-06 1.9E-10 72.3 14.2 60 406-466 48-107 (131)
155 2lni_A Stress-induced-phosphop 98.4 4.7E-06 1.6E-10 73.1 13.7 26 440-465 85-110 (133)
156 2vgx_A Chaperone SYCD; alterna 98.4 2E-06 6.9E-11 77.6 11.3 98 438-537 20-117 (148)
157 3upv_A Heat shock protein STI1 98.3 9.3E-06 3.2E-10 70.8 14.6 98 156-257 4-101 (126)
158 1dce_A Protein (RAB geranylger 98.3 2E-05 6.9E-10 88.0 19.4 175 489-731 44-244 (567)
159 4b4t_Q 26S proteasome regulato 98.3 0.00013 4.5E-09 78.9 25.7 169 407-575 58-247 (434)
160 2fbn_A 70 kDa peptidylprolyl i 98.3 1.3E-06 4.4E-11 83.5 8.3 88 440-529 89-176 (198)
161 2kck_A TPR repeat; tetratricop 98.3 2.4E-06 8.3E-11 72.3 9.0 98 645-743 6-107 (112)
162 2hr2_A Hypothetical protein; a 98.3 3.2E-06 1.1E-10 75.5 9.8 97 647-744 13-133 (159)
163 2fbn_A 70 kDa peptidylprolyl i 98.3 1.4E-06 4.7E-11 83.3 8.1 87 475-564 89-176 (198)
164 4gcn_A Protein STI-1; structur 98.3 1.3E-05 4.4E-10 70.0 13.8 104 441-547 10-119 (127)
165 1elw_A TPR1-domain of HOP; HOP 98.3 3.1E-05 1.1E-09 65.9 16.0 99 156-258 4-102 (118)
166 1elw_A TPR1-domain of HOP; HOP 98.2 4.7E-05 1.6E-09 64.7 16.1 94 372-467 7-100 (118)
167 3sz7_A HSC70 cochaperone (SGT) 98.2 1.8E-05 6.3E-10 72.7 14.0 99 156-258 11-109 (164)
168 1hxi_A PEX5, peroxisome target 98.2 9.6E-06 3.3E-10 70.2 11.3 96 158-257 19-114 (121)
169 2xcb_A PCRH, regulatory protei 98.2 1.6E-05 5.3E-10 71.1 13.1 96 157-256 19-114 (142)
170 2kck_A TPR repeat; tetratricop 98.2 2E-05 6.7E-10 66.5 13.0 99 156-258 6-107 (112)
171 3rkv_A Putative peptidylprolyl 98.2 5.8E-06 2E-10 75.9 10.2 100 645-745 11-129 (162)
172 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 2E-06 6.9E-11 94.0 8.2 110 623-735 281-407 (457)
173 3q49_B STIP1 homology and U bo 98.2 3E-05 1E-09 68.4 14.0 98 155-256 8-105 (137)
174 1elr_A TPR2A-domain of HOP; HO 98.2 2.2E-05 7.6E-10 68.4 12.7 111 440-553 5-121 (131)
175 2dba_A Smooth muscle cell asso 98.1 3.9E-05 1.3E-09 68.6 14.3 114 155-270 27-140 (148)
176 2xev_A YBGF; tetratricopeptide 98.1 5.4E-05 1.9E-09 65.9 14.5 99 158-257 4-105 (129)
177 2dba_A Smooth muscle cell asso 98.1 0.0001 3.4E-09 65.9 16.6 99 437-538 26-128 (148)
178 3k9i_A BH0479 protein; putativ 98.1 2.9E-06 9.9E-11 73.0 5.9 86 658-744 3-92 (117)
179 1elr_A TPR2A-domain of HOP; HO 98.1 2.6E-05 9E-10 67.9 12.0 58 372-430 7-64 (131)
180 1wao_1 Serine/threonine protei 98.1 5.5E-06 1.9E-10 90.9 8.9 114 621-737 17-134 (477)
181 2xev_A YBGF; tetratricopeptide 98.1 1.9E-05 6.4E-10 69.0 10.6 96 649-744 6-107 (129)
182 4b4t_Q 26S proteasome regulato 98.1 0.00011 3.6E-09 79.7 18.8 200 162-397 10-244 (434)
183 3rkv_A Putative peptidylprolyl 98.0 5.9E-05 2E-09 69.0 13.3 101 156-257 11-126 (162)
184 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 6.9E-06 2.4E-10 89.7 7.8 117 171-292 249-379 (457)
185 2hr2_A Hypothetical protein; a 98.0 6.1E-05 2.1E-09 67.2 12.3 102 477-578 14-136 (159)
186 3k9i_A BH0479 protein; putativ 98.0 1.5E-05 5E-10 68.5 7.7 89 168-257 2-90 (117)
187 3ro3_A PINS homolog, G-protein 98.0 3.1E-05 1.1E-09 70.3 10.5 98 476-573 51-158 (164)
188 1zu2_A Mitochondrial import re 98.0 2.3E-05 7.9E-10 69.8 8.7 85 624-710 16-123 (158)
189 3ro3_A PINS homolog, G-protein 98.0 8E-05 2.7E-09 67.5 12.9 99 157-255 10-116 (164)
190 1wao_1 Serine/threonine protei 97.9 4.1E-05 1.4E-09 84.0 12.4 118 378-498 15-134 (477)
191 3n71_A Histone lysine methyltr 97.9 4.9E-05 1.7E-09 82.8 12.5 141 518-746 318-468 (490)
192 2if4_A ATFKBP42; FKBP-like, al 97.9 1.4E-05 4.9E-10 83.3 6.6 118 623-743 192-329 (338)
193 1zu2_A Mitochondrial import re 97.9 1.6E-05 5.5E-10 70.8 5.9 89 657-746 14-124 (158)
194 1ihg_A Cyclophilin 40; ppiase 97.9 0.00013 4.3E-09 77.0 13.8 117 158-276 225-354 (370)
195 2l6j_A TPR repeat-containing p 97.9 2.7E-05 9.4E-10 65.7 7.2 93 644-736 3-101 (111)
196 1dce_A Protein (RAB geranylger 97.8 0.00065 2.2E-08 75.8 19.8 173 385-562 45-244 (567)
197 1ihg_A Cyclophilin 40; ppiase 97.8 0.00019 6.6E-09 75.6 14.3 85 440-526 274-358 (370)
198 2kat_A Uncharacterized protein 97.8 5E-05 1.7E-09 64.8 7.8 81 663-744 3-84 (115)
199 2if4_A ATFKBP42; FKBP-like, al 97.8 8E-05 2.7E-09 77.6 10.7 147 157-327 180-327 (338)
200 1klx_A Cysteine rich protein B 97.7 0.00097 3.3E-08 58.9 15.6 110 419-539 10-127 (138)
201 1na3_A Designed protein CTPR2; 97.7 0.00012 4E-09 59.0 8.8 82 645-727 9-91 (91)
202 3n71_A Histone lysine methyltr 97.7 0.00018 6.1E-09 78.3 11.9 91 165-255 318-420 (490)
203 1klx_A Cysteine rich protein B 97.7 0.0011 3.6E-08 58.6 14.9 110 279-399 10-127 (138)
204 2l6j_A TPR repeat-containing p 97.5 0.00045 1.5E-08 57.9 10.1 91 473-566 3-100 (111)
205 3ma5_A Tetratricopeptide repea 97.5 0.00025 8.5E-09 58.6 7.1 68 676-744 4-72 (100)
206 1na3_A Designed protein CTPR2; 97.4 0.0014 4.8E-08 52.4 11.1 80 157-240 10-89 (91)
207 2kat_A Uncharacterized protein 97.4 0.00067 2.3E-08 57.6 9.5 79 174-256 3-81 (115)
208 3u64_A Protein TP_0956; tetrat 97.2 0.018 6.1E-07 56.4 18.2 86 623-710 176-272 (301)
209 3qww_A SET and MYND domain-con 97.2 0.0016 5.4E-08 69.6 10.9 91 625-742 313-411 (433)
210 3ma5_A Tetratricopeptide repea 97.1 0.0018 6E-08 53.3 8.9 64 473-537 6-69 (100)
211 3ly7_A Transcriptional activat 97.1 0.015 5.2E-07 59.4 17.2 64 262-328 276-339 (372)
212 2kc7_A BFR218_protein; tetratr 97.1 0.00096 3.3E-08 54.7 6.6 61 651-711 6-68 (99)
213 3qww_A SET and MYND domain-con 97.0 0.0022 7.5E-08 68.5 9.8 89 168-256 310-410 (433)
214 2kc7_A BFR218_protein; tetratr 97.0 0.001 3.4E-08 54.5 5.8 80 623-711 13-94 (99)
215 3qwp_A SET and MYND domain-con 96.8 0.0044 1.5E-07 66.3 10.8 94 162-255 293-398 (429)
216 3qwp_A SET and MYND domain-con 96.8 0.0033 1.1E-07 67.2 9.7 91 652-742 294-400 (429)
217 1pc2_A Mitochondria fission pr 96.6 0.0086 3E-07 52.6 8.9 83 628-711 16-104 (152)
218 3ly7_A Transcriptional activat 96.5 0.036 1.2E-06 56.6 14.1 73 471-547 274-346 (372)
219 3mkq_A Coatomer beta'-subunit; 96.5 0.17 5.9E-06 59.2 22.5 76 303-396 633-708 (814)
220 3u64_A Protein TP_0956; tetrat 96.5 0.0073 2.5E-07 59.1 8.3 86 660-745 178-272 (301)
221 3bee_A Putative YFRE protein; 96.4 0.0061 2.1E-07 49.1 6.4 52 693-745 24-75 (93)
222 1pc2_A Mitochondria fission pr 96.4 0.0095 3.2E-07 52.3 8.0 86 659-744 12-102 (152)
223 3mkq_A Coatomer beta'-subunit; 96.0 0.055 1.9E-06 63.6 14.5 130 373-535 633-762 (814)
224 2v5f_A Prolyl 4-hydroxylase su 95.8 0.07 2.4E-06 43.9 10.4 70 155-224 4-77 (104)
225 3bee_A Putative YFRE protein; 95.8 0.067 2.3E-06 42.9 9.8 63 194-257 7-72 (93)
226 2v5f_A Prolyl 4-hydroxylase su 95.2 0.12 4.1E-06 42.4 9.7 70 508-577 4-79 (104)
227 3mkq_B Coatomer subunit alpha; 95.1 0.96 3.3E-05 40.7 15.7 97 310-427 16-112 (177)
228 4ady_A RPN2, 26S proteasome re 94.9 6.6 0.00022 45.4 25.6 20 413-432 569-588 (963)
229 3mkq_B Coatomer subunit alpha; 94.9 0.46 1.6E-05 42.7 13.1 46 344-395 15-60 (177)
230 4b4t_P 26S proteasome regulato 94.9 4.9 0.00017 42.7 24.7 60 715-776 361-420 (445)
231 1nzn_A CGI-135 protein, fissio 94.8 0.083 2.8E-06 44.5 7.4 83 662-744 18-105 (126)
232 4h7y_A Dual specificity protei 94.6 0.4 1.4E-05 41.4 11.2 117 153-272 10-137 (161)
233 1nzn_A CGI-135 protein, fissio 93.7 0.32 1.1E-05 40.9 8.8 82 629-711 20-107 (126)
234 1wy6_A Hypothetical protein ST 93.7 2.8 9.6E-05 35.4 15.8 138 310-469 18-155 (172)
235 4ady_A RPN2, 26S proteasome re 93.4 6.1 0.00021 45.6 21.4 351 158-526 341-723 (963)
236 1wy6_A Hypothetical protein ST 93.1 2.5 8.5E-05 35.7 12.8 64 300-364 92-155 (172)
237 4h7y_A Dual specificity protei 91.9 1.6 5.6E-05 37.7 10.7 114 436-552 10-136 (161)
238 1y8m_A FIS1; mitochondria, unk 90.6 1.4 4.9E-05 37.7 9.1 68 642-709 36-108 (144)
239 3lvg_A Clathrin heavy chain 1; 90.1 0.0073 2.5E-07 62.9 -6.4 218 154-390 81-325 (624)
240 4gns_B Protein CSD3, chitin bi 89.7 1.4 4.8E-05 49.9 10.8 129 232-361 252-398 (754)
241 4gns_B Protein CSD3, chitin bi 89.3 3.3 0.00011 46.9 13.5 131 194-326 249-398 (754)
242 3o48_A Mitochondria fission 1 88.7 1.6 5.4E-05 36.9 7.8 68 642-709 37-109 (134)
243 3lvg_A Clathrin heavy chain 1; 87.2 1.4E-05 4.7E-10 82.7 -28.6 205 334-573 54-258 (624)
244 2ff4_A Probable regulatory pro 87.0 8.4 0.00029 40.1 14.2 118 168-304 127-250 (388)
245 2ff4_A Probable regulatory pro 86.4 6.4 0.00022 41.0 12.9 71 478-549 175-250 (388)
246 1qsa_A Protein (soluble lytic 86.1 45 0.0016 36.8 34.0 361 139-535 55-439 (618)
247 3lpz_A GET4 (YOR164C homolog); 85.2 33 0.0011 34.3 22.9 168 336-537 37-215 (336)
248 4fhn_B Nucleoporin NUP120; pro 84.7 15 0.00052 44.5 16.8 129 441-571 901-1048(1139)
249 2wpv_A GET4, UPF0363 protein Y 84.4 34 0.0012 33.9 21.5 168 336-537 35-216 (312)
250 3ffl_A Anaphase-promoting comp 83.6 15 0.00051 32.4 11.6 60 162-221 26-91 (167)
251 3o48_A Mitochondria fission 1 83.6 11 0.00036 31.9 10.2 67 471-537 37-106 (134)
252 4fhn_B Nucleoporin NUP120; pro 83.4 23 0.0008 42.8 17.7 213 159-396 815-1048(1139)
253 1y8m_A FIS1; mitochondria, unk 82.8 22 0.00074 30.4 12.1 67 471-537 36-105 (144)
254 4b4t_P 26S proteasome regulato 82.7 52 0.0018 34.7 20.1 95 443-537 141-246 (445)
255 3txn_A 26S proteasome regulato 81.0 54 0.0019 33.8 20.8 92 304-395 104-207 (394)
256 3ffl_A Anaphase-promoting comp 78.8 7 0.00024 34.5 7.8 85 158-255 65-149 (167)
257 4b4t_R RPN7, 26S proteasome re 73.8 29 0.00098 36.6 12.8 61 195-255 133-195 (429)
258 1v54_E Cytochrome C oxidase po 72.7 26 0.0009 27.8 8.7 63 489-552 25-87 (109)
259 3txn_A 26S proteasome regulato 70.6 1E+02 0.0035 31.7 21.7 165 336-501 21-208 (394)
260 4b4t_R RPN7, 26S proteasome re 70.3 31 0.001 36.3 12.0 100 156-255 131-235 (429)
261 2wpv_A GET4, UPF0363 protein Y 70.3 88 0.003 30.9 24.0 27 332-358 132-158 (312)
262 1v54_E Cytochrome C oxidase po 70.0 19 0.00066 28.6 7.4 46 422-467 28-73 (109)
263 3lpz_A GET4 (YOR164C homolog); 68.0 1E+02 0.0035 30.8 29.3 133 406-557 37-180 (336)
264 2p58_C Putative type III secre 66.5 47 0.0016 26.3 8.8 78 314-399 22-99 (116)
265 1zbp_A Hypothetical protein VP 65.5 99 0.0034 29.7 13.9 25 656-680 111-135 (273)
266 3ltm_A Alpha-REP4; protein eng 64.8 83 0.0029 28.6 17.5 140 403-558 63-202 (211)
267 2y69_E Cytochrome C oxidase su 64.6 41 0.0014 28.4 8.7 63 489-552 68-130 (152)
268 1zbp_A Hypothetical protein VP 64.1 24 0.00083 33.9 8.5 54 166-222 7-60 (273)
269 2uwj_G Type III export protein 63.8 45 0.0015 26.4 8.2 78 314-399 21-98 (115)
270 2p58_C Putative type III secre 57.3 45 0.0016 26.4 7.2 50 413-468 49-98 (116)
271 2y69_E Cytochrome C oxidase su 57.1 69 0.0024 27.0 8.8 46 352-397 71-116 (152)
272 3kae_A CDC27, possible protein 54.3 76 0.0026 27.9 8.9 32 708-739 109-140 (242)
273 2uwj_G Type III export protein 54.3 44 0.0015 26.4 6.7 50 413-468 48-97 (115)
274 3esl_A Checkpoint serine/threo 53.5 95 0.0033 28.3 10.1 53 420-472 95-148 (202)
275 3esl_A Checkpoint serine/threo 53.4 99 0.0034 28.2 10.2 57 487-543 92-149 (202)
276 2zu6_B Programmed cell death p 51.3 88 0.003 30.9 10.5 26 648-673 169-194 (307)
277 4a1g_A Mitotic checkpoint seri 50.9 29 0.001 30.1 6.0 50 697-746 84-134 (152)
278 3eiq_C Programmed cell death p 44.4 1.4E+02 0.0047 30.2 10.8 69 477-546 220-290 (358)
279 2d2s_A Exocyst complex compone 43.7 1.8E+02 0.006 27.4 10.8 91 162-255 24-118 (235)
280 4aez_C MAD3, mitotic spindle c 41.1 46 0.0016 31.0 6.1 51 696-746 132-183 (223)
281 4a1g_A Mitotic checkpoint seri 39.2 1.8E+02 0.0062 25.1 9.2 50 423-472 84-134 (152)
282 2h8h_A Proto-oncogene tyrosine 37.8 6.9 0.00023 42.9 0.0 11 699-709 495-505 (535)
283 2xk0_A Polycomb protein PCL; t 37.1 12 0.0004 27.0 1.1 8 1-8 3-10 (69)
284 2wvi_A Mitotic checkpoint seri 34.8 2.3E+02 0.008 24.8 9.6 83 385-472 46-129 (164)
285 3kae_A CDC27, possible protein 33.1 2.6E+02 0.0087 24.7 14.1 37 641-677 202-240 (242)
286 3l6a_A Eukaryotic translation 32.2 3E+02 0.01 27.8 11.2 25 196-220 15-39 (364)
287 2d2s_A Exocyst complex compone 30.3 2.7E+02 0.0094 26.0 9.8 29 438-466 90-118 (235)
288 2nsz_A Programmed cell death p 28.8 1.6E+02 0.0053 24.6 7.1 63 478-541 11-75 (129)
289 2zu6_B Programmed cell death p 28.6 2E+02 0.007 28.2 8.9 64 477-541 169-234 (307)
290 4aez_C MAD3, mitotic spindle c 28.5 1.8E+02 0.0062 27.0 7.9 54 209-262 130-184 (223)
291 1oyz_A Hypothetical protein YI 28.3 3.8E+02 0.013 25.3 21.5 17 473-489 205-221 (280)
292 3eiq_C Programmed cell death p 28.3 4.7E+02 0.016 26.3 15.1 26 648-673 220-245 (358)
293 3mv2_A Coatomer subunit alpha; 27.9 4.5E+02 0.015 25.9 11.5 127 166-328 124-256 (325)
294 3ltm_A Alpha-REP4; protein eng 27.5 3.3E+02 0.011 24.3 18.9 92 402-502 93-184 (211)
295 3pvs_A Replication-associated 27.3 4.9E+02 0.017 27.1 12.3 48 279-328 166-221 (447)
296 2nsz_A Programmed cell death p 25.1 1.9E+02 0.0066 24.0 7.0 24 338-361 11-34 (129)
297 2ijq_A Hypothetical protein; s 23.6 2.8E+02 0.0095 24.2 7.7 56 166-221 42-103 (161)
298 4gq2_M Nucleoporin NUP120; bet 23.3 5.4E+02 0.018 30.0 12.8 138 155-313 809-950 (950)
299 3mv2_A Coatomer subunit alpha; 23.3 5.4E+02 0.019 25.3 11.9 68 491-558 187-257 (325)
300 1k1a_A B-cell lymphoma 3-encod 23.2 1.9E+02 0.0064 26.6 7.6 15 345-359 87-101 (241)
301 1qsa_A Protein (soluble lytic 23.1 7.7E+02 0.026 27.0 36.0 372 142-545 88-486 (618)
302 3eu9_A Huntingtin-interacting 23.0 40 0.0014 31.4 2.6 14 520-533 218-231 (240)
303 1oyz_A Hypothetical protein YI 22.6 4.9E+02 0.017 24.5 22.9 154 402-572 103-262 (280)
304 3pvs_A Replication-associated 22.6 6.7E+02 0.023 26.1 13.2 35 451-485 267-301 (447)
305 4b4t_S RPN3, 26S proteasome re 22.2 1.8E+02 0.0061 31.0 7.4 65 645-709 231-301 (523)
306 2ion_A PDCD4, programmed cell 21.6 1.4E+02 0.0048 25.8 5.5 22 479-500 14-35 (152)
307 2ijq_A Hypothetical protein; s 20.9 4.1E+02 0.014 23.1 8.3 53 204-256 43-103 (161)
308 4b4t_S RPN3, 26S proteasome re 20.9 3.5E+02 0.012 28.8 9.3 65 158-222 233-299 (523)
309 4fke_A Aminopeptidase N; zinc 20.5 1E+03 0.035 27.5 15.3 23 478-500 762-784 (909)
310 3bge_A Predicted ATPase; struc 20.1 4.8E+02 0.017 23.5 8.6 36 451-486 19-54 (201)
311 2xig_A Ferric uptake regulatio 20.0 2.8E+02 0.0094 23.7 7.2 64 498-562 16-79 (150)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8e-41 Score=385.55 Aligned_cols=493 Identities=12% Similarity=0.037 Sum_probs=409.0
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003433 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (820)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 234 (820)
..+.|..++..+.+.|++++|+++|++++... ++ ...+..++.+|.+.|++++|+.+|+++... +++..+++.+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDIT---GN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhC---CC-chHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 35678889999999999999999999999664 22 256788999999999999999999998653 5689999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCH
Q 003433 235 ISAYGRSGYCQEAISVFNSMKRY---------------NLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDR 299 (820)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~---------------~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~ 299 (820)
+.+|.+.|++++|+++|+++... +...+..+|+.++.+|.+.| ++++|+++|++|.+.+.. +.
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~-~~ 234 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS-NFDRAKECYKEALMVDAK-CY 234 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCch-hh
Confidence 99999999999999999954321 22335889999999999999 999999999999986533 55
Q ss_pred HHHHHHHHHHHhCCCHHHHH--HH-HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHH
Q 003433 300 ITFNSLLAVCSRGGLWEAAR--NL-FNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMI 376 (820)
Q Consensus 300 ~~~~~ll~~~~~~g~~~~A~--~~-~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 376 (820)
..+..+...+...+..+.+. .+ +..+...+......+|+.++..|.+.|++++|+++|+++.+. .++..+|+.++
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 312 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKA 312 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHH
Confidence 66666665554443332222 22 555555544455667888899999999999999999999875 46999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003433 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYD 456 (820)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 456 (820)
.+|.+.|++++|+++|+++.+.+ +.+..+++.++.+|.+.|++++|..+++++.+.. +.+..+|+.++.+|.+.|+++
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHH
Confidence 99999999999999999999875 4577889999999999999999999999998655 668999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 457 EVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (820)
Q Consensus 457 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (820)
+|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+. .+..+|+.++.+|.+.|++++|+++|++|.
T Consensus 391 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 391 EARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998753 45688999999999999999999999999998764 388999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCC
Q 003433 537 KEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQG 616 (820)
Q Consensus 537 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (820)
+.. ..+..+|..++.+|.+.|++++|++.++++++.
T Consensus 469 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------------------------------- 504 (597)
T 2xpi_A 469 ALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLL------------------------------------------- 504 (597)
T ss_dssp HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------------------
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------------------------------------------
Confidence 853 336789999999999999888776654433321
Q ss_pred ccchhhhhhHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccch
Q 003433 617 KKENRCRQEILCILGVFQKMHKLKIKPN--VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNI 693 (820)
Q Consensus 617 ~~~~~~~~~~~~Al~~~~~m~~~~~~Pd--~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 693 (820)
.. +.+..|+ ..+|..++.+|.+.|++++|.++|+++.+.+|.+..+...+...+ ..|+
T Consensus 505 ----------------~~---~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 505 ----------------VK---KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp ----------------HH---HSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC
T ss_pred ----------------hh---ccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence 11 2256787 678999999999999999999999999988888777766666555 5789
Q ss_pred HHHHHHHHHHHhhcCCCcchhHHHHHHHHHhh
Q 003433 694 WVQALSLFDEVKLMDSSTASAFYNALTDMLWH 725 (820)
Q Consensus 694 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 725 (820)
+++|...|+++++++|++ ...+..|+++|..
T Consensus 566 ~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 566 PGLAITHLHESLAISPNE-IMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHHHHCTTC-HHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhcCCCC-hHHHHHHHHHHhc
Confidence 999999999999999965 6678888887753
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.5e-38 Score=361.85 Aligned_cols=478 Identities=11% Similarity=0.008 Sum_probs=391.9
Q ss_pred HHHHHHHhccCCcchHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhc
Q 003433 127 EALHHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRL 206 (820)
Q Consensus 127 ~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 206 (820)
..+..+...+..+ .+..++..+.....+...+..++..|.+.|++++|+++|+.+... +.+..++..++.+|.+.
T Consensus 89 ~~~~~~~~~g~~~-~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~ 163 (597)
T 2xpi_A 89 LWRHDALMQQQYK-CAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY----NRSSACRYLAAFCLVKL 163 (597)
T ss_dssp HHHHHHHHTTCHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG----GTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCch-HHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc----ccchhHHHHHHHHHHHH
Confidence 3344444444433 333444443323335567888999999999999999999988654 34456899999999999
Q ss_pred CChHHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003433 207 GKVDLAKNIFETALNE---------------GYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVID 271 (820)
Q Consensus 207 g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 271 (820)
|++++|+++|+++... +...++.+|+.++.+|.+.|++++|+++|++|.+.+.. +...+..+..
T Consensus 164 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~ 242 (597)
T 2xpi_A 164 YDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVS 242 (597)
T ss_dssp TCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHH
Confidence 9999999999964322 12335899999999999999999999999999985533 5666666666
Q ss_pred HHHcCCCCHHHHH--HH-HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003433 272 ACGKGGVDFKHVV--EI-FDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGA 348 (820)
Q Consensus 272 ~~~~~g~~~~~A~--~~-~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 348 (820)
.+...+ ..+.+. .+ +..+...+......+|+.++..|.+.|++++|.++|+++.+. +++..+++.++.+|.+.|
T Consensus 243 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 243 NHLLTA-DEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp TTCSCH-HHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTT
T ss_pred hhcccc-hhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhc
Confidence 554443 222221 11 555555555555667788888999999999999999999876 578999999999999999
Q ss_pred CHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003433 349 QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCK 428 (820)
Q Consensus 349 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~ 428 (820)
++++|+++|+++.+.+.. +..+|+.++.+|.+.|++++|.++++++.+.. +.+..+++.++.+|.+.|++++|.++|+
T Consensus 320 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp CHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 999999999999987644 78899999999999999999999999998764 6678999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003433 429 EMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD 508 (820)
Q Consensus 429 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 508 (820)
++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.... +
T Consensus 398 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~ 474 (597)
T 2xpi_A 398 KSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-D 474 (597)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-C
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C
Confidence 998765 5678999999999999999999999999999874 558899999999999999999999999999987654 8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhh
Q 003433 509 VVLYSALIDALCKNGLVESAVSLLDEMTKE----GIRPN--VVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDA 582 (820)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~ 582 (820)
..+|+.++..|.+.|++++|+++|++|.+. +..|+ ..+|..++.+|.+.|++++|++
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~----------------- 537 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID----------------- 537 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH-----------------
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH-----------------
Confidence 999999999999999999999999999875 66888 7799999999999988776654
Q ss_pred hhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCH
Q 003433 583 MCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSF 661 (820)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~ 661 (820)
+|+++++. .| +..+|..++.+|.+.|++
T Consensus 538 -------------------------------------------------~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~ 566 (597)
T 2xpi_A 538 -------------------------------------------------ALNQGLLL--STNDANVHTAIALVYLHKKIP 566 (597)
T ss_dssp -------------------------------------------------HHHHHHHH--SSCCHHHHHHHHHHHHHTTCH
T ss_pred -------------------------------------------------HHHHHHHh--CCCChHHHHHHHHHHHHhCCH
Confidence 55555542 34 678899999999999999
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHH
Q 003433 662 EDASMLLEELRLFDNQVYGVAHGLL 686 (820)
Q Consensus 662 ~eA~~~~~~~~~~~~~~~~~~~~~~ 686 (820)
++|.++|+++++.+|++......+.
T Consensus 567 ~~A~~~~~~~l~~~p~~~~~~~~l~ 591 (597)
T 2xpi_A 567 GLAITHLHESLAISPNEIMASDLLK 591 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHH
Confidence 9999999999999998877655443
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=7.4e-28 Score=261.11 Aligned_cols=382 Identities=15% Similarity=0.149 Sum_probs=333.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 241 (820)
+...+.+.|++++|++.|..+++.. |.+..++..+...+...|++++|...++.+++.. +.+..+|..++.+|.+.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~ 80 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC
Confidence 4566788999999999999998874 5556678889999999999999999999998875 45889999999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 003433 242 GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNL 321 (820)
Q Consensus 242 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 321 (820)
|++++|++.|+++.+.... +..+|..+..++.+.| ++++|.+.|+++++.... +...+..+...+...|++++|.++
T Consensus 81 g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAG-DMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHS-CSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHH
Confidence 9999999999999875322 5668999999999999 999999999999986433 456778888899999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003433 322 FNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIG 401 (820)
Q Consensus 322 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 401 (820)
|+++.+.. +.+..+|+.+...|.+.|++++|+..|+++.+.+.. +...|..+...+...|++++|+..|++..... +
T Consensus 158 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p 234 (388)
T 1w3b_A 158 YLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-P 234 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-T
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 99999874 446889999999999999999999999999987543 67889999999999999999999999998874 4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003433 402 LDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLI 481 (820)
Q Consensus 402 ~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 481 (820)
.+..++..+...|.+.|++++|+..|+++.+.. +.+..+|..+..+|.+.|++++|...|+++.+.. +.+..+++.+.
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 312 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 567899999999999999999999999999876 5578899999999999999999999999998863 66889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcC
Q 003433 482 DVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYNSIIDAFGRSA 558 (820)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g 558 (820)
..|.+.|++++|...|+++.+..+ .+..+|..++..|.+.|++++|+..|+++++. .|+ ...|..+...+...|
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 999999999999999999988653 36889999999999999999999999999974 454 457777777665554
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=3.6e-27 Score=255.71 Aligned_cols=377 Identities=14% Similarity=0.127 Sum_probs=208.9
Q ss_pred HcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003433 274 GKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLA 353 (820)
Q Consensus 274 ~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A 353 (820)
.+.| ++++|++.++++.+.... +...+..+...+...|++++|...++..++.. +.+..+|..+...|.+.|++++|
T Consensus 10 ~~~g-~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 10 YQAG-DFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHT-CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHCC-CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 3444 555555555555443211 33344444444555555555555555554432 33445555555555555555555
Q ss_pred HHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 354 FEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS 433 (820)
Q Consensus 354 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 433 (820)
++.|+++.+.... +..+|..+..+|.+.|++++|++.|+++.+.. +.+...+..+...|...|++++|.+.|+++.+.
T Consensus 87 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5555555543211 33445555555555555555555555555542 223344455555555556666666666555544
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003433 434 GIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYS 513 (820)
Q Consensus 434 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 513 (820)
. +.+..+|+.+...|.+.|++++|...|+++++.+ +.+...|..+...+...|++++|...|++..+..+. +..+|.
T Consensus 165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 241 (388)
T 1w3b_A 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHG 241 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHH
Confidence 3 3345556666666666666666666666665542 233455566666666666666666666666554322 455666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhh
Q 003433 514 ALIDALCKNGLVESAVSLLDEMTKEGIRP-NVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQ 592 (820)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 592 (820)
.++..|.+.|++++|+..|+++++. .| +..+|..+..++.+.|++++|+.
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~--------------------------- 292 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAED--------------------------- 292 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHH---------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHH---------------------------
Confidence 6666666666666666666666653 22 34455555555555555544433
Q ss_pred hhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHh
Q 003433 593 EAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELR 672 (820)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~ 672 (820)
.|+++++. ...+..++..++..+...|++++|.++|++++
T Consensus 293 ---------------------------------------~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 332 (388)
T 1w3b_A 293 ---------------------------------------CYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332 (388)
T ss_dssp ---------------------------------------HHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred ---------------------------------------HHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333331 11244556666666777777777777777776
Q ss_pred hcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCc
Q 003433 673 LFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQ 728 (820)
Q Consensus 673 ~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 728 (820)
+.+|++......+...+ +.|++++|+..|+++++++|+. ...|..++.+|...|+
T Consensus 333 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 333 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF-ADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHTCC
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHhHHHHHHHccC
Confidence 66666555555544443 4666777777777777777754 5567778887777653
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=6.1e-29 Score=274.20 Aligned_cols=185 Identities=16% Similarity=0.199 Sum_probs=105.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHCCCCCCHHHH
Q 003433 372 YSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGR---------FEEALLVCKEMESSGIRKDAVTY 442 (820)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~---------~~~A~~~~~~~~~~~~~~~~~~~ 442 (820)
++.+|++|++.|++++|+++|++|.+.|+.||.+|||+||.+|++.+. +++|.++|++|.+.|+.||..||
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 344444444444444444444444444444444444444444443322 45555666666666666666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003433 443 NALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKN 522 (820)
Q Consensus 443 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 522 (820)
++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh
Q 003433 523 GLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR 556 (820)
Q Consensus 523 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 556 (820)
|++++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666655544
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.6e-28 Score=270.87 Aligned_cols=205 Identities=15% Similarity=0.183 Sum_probs=147.8
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCC---------HHH
Q 003433 318 ARNLFNEMVHRGIDQD-IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR---------LDD 387 (820)
Q Consensus 318 A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~ 387 (820)
+..+.+++.+.+.... ..+++.+|++|++.|++++|+++|++|.+.|+.||.+|||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 3344444554444333 234566666666666666666666666666666666666666666665443 677
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003433 388 ALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKA 467 (820)
Q Consensus 388 A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 467 (820)
|.++|++|...|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003433 468 DCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKN 522 (820)
Q Consensus 468 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 522 (820)
.|+.||..||++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888888888888888888877653
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.3e-23 Score=236.77 Aligned_cols=449 Identities=11% Similarity=0.006 Sum_probs=244.3
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 235 (820)
.+.+......+.+.|++++|++.|++++... + +..++..++.++.+.|++++|+..|+++++.++ .+..+|..++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 80 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK---E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHH
Confidence 3456677888889999999999999998875 2 356888899999999999999999999988753 4778889999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 003433 236 SAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW 315 (820)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 315 (820)
.+|.+.|++++|+..|+++.+.+. ++......++..+.... ....+.+.+..+...+..++...+..-..........
T Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 81 SANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQ-AMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHH-HHHHHTTC---------------------------CC
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 999999999999999999887653 23344444444443333 3333333333332222222222111110000000000
Q ss_pred HHHHHHHHHHHHCCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHchh-----CCCC--------CCHH
Q 003433 316 EAARNLFNEMVHRGI---------DQDIFTYNTLLDAICK---GAQMDLAFEIMAEMPA-----KNIS--------PNVV 370 (820)
Q Consensus 316 ~~A~~~~~~~~~~g~---------~~~~~~~~~ll~~~~~---~g~~~~A~~~~~~m~~-----~g~~--------p~~~ 370 (820)
.....+...+..... +.+...+..+...+.. .|++++|+.+|+++.+ ..-. .+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 000001101100000 1113333333333333 5556666666655554 2001 1233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003433 371 TYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYG 450 (820)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 450 (820)
++..+...|...|++++|+..|+++.+.. |+...+..+...|...|++++|+..++++.+.. +.+..+|..+...|.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHH
Confidence 44555555555555555555555555542 224455555555555555555555555555443 334455555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003433 451 KQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVS 530 (820)
Q Consensus 451 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 530 (820)
..|++++|...|+++.+.. +.+...+..+...|...|++++|...|+++.+.... +...|..++..|.+.|++++|..
T Consensus 316 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 5555555555555555442 223445555555555555555555555555544322 34455555555555555555555
Q ss_pred HHHHHHHCCC-CCC----HHHHHHHHHHHhh---cCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHH
Q 003433 531 LLDEMTKEGI-RPN----VVTYNSIIDAFGR---SATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQII 602 (820)
Q Consensus 531 ~~~~m~~~g~-~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (820)
.|+++.+... .++ ..++..+..++.. .|
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------------------------------- 429 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE-------------------------------------------- 429 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT--------------------------------------------
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC--------------------------------------------
Confidence 5555543210 001 1134444444444 33
Q ss_pred HHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHH
Q 003433 603 KVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGV 681 (820)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~ 681 (820)
++++|+..|++++. ..| +..++..++.+|.+.|++++|.+.|+++.+.+|.+..+
T Consensus 430 ----------------------~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 430 ----------------------NFIEATNLLEKASK--LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485 (514)
T ss_dssp ----------------------HHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred ----------------------CHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHH
Confidence 44455566666655 234 45667888889999999999999999998888877665
Q ss_pred HHH
Q 003433 682 AHG 684 (820)
Q Consensus 682 ~~~ 684 (820)
...
T Consensus 486 ~~~ 488 (514)
T 2gw1_A 486 LQA 488 (514)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.2e-23 Score=234.80 Aligned_cols=454 Identities=12% Similarity=0.020 Sum_probs=300.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003433 194 KLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDAC 273 (820)
Q Consensus 194 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 273 (820)
..+...+..+.+.|++++|+..|+++++.+ |+..+|..++.+|.+.|++++|+..|+++.+.+.. +..+|..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHHH
Confidence 466778888999999999999999998875 58889999999999999999999999999875532 677888999999
Q ss_pred HcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CH
Q 003433 274 GKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGA---QM 350 (820)
Q Consensus 274 ~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g---~~ 350 (820)
.+.| ++++|...|+++...+. .+......++..+........+.+.+..+...+..++...++.......... ..
T Consensus 84 ~~~g-~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 84 EGLG-KFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHTT-CHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHh-hHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999 99999999999988754 2444444444444443333444444433332221222111111111111111 11
Q ss_pred HHHHHHHHHchhC------CCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----CCC--------CCCHHHHH
Q 003433 351 DLAFEIMAEMPAK------NISPNVVTYSTMIDGYAK---AGRLDDALNMFSEMKF-----LGI--------GLDRVSYN 408 (820)
Q Consensus 351 ~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~--------~~d~~~~~ 408 (820)
..+...+...... .-..+...+..+...+.. .|++++|+.+|+++.+ ... +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1111111111110 001124445555555554 7889999999888877 311 12345677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003433 409 TVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGG 488 (820)
Q Consensus 409 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 488 (820)
.+...+...|++++|...|+++.+.. |+..++..+...|...|++++|...|+++.... +.+..++..+...|...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 77888888888888888888887765 337778888888888888888888888887763 445677888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHH
Q 003433 489 LYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVE 568 (820)
Q Consensus 489 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 568 (820)
++++|...|+++.+.... +...+..++..|...|++++|+..|+++.+.. ..+..++..+..++.+.|++++|+..++
T Consensus 319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888888876543 56778888888888888888888888887642 2245577777777878887777766555
Q ss_pred HHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCCHHHH
Q 003433 569 RDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTF 648 (820)
Q Consensus 569 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~~~~ 648 (820)
+++...+... ...-...++
T Consensus 397 ~a~~~~~~~~-------------------------------------------------------------~~~~~~~~~ 415 (514)
T 2gw1_A 397 LAIELENKLD-------------------------------------------------------------GIYVGIAPL 415 (514)
T ss_dssp HHHHHHHTSS-------------------------------------------------------------SCSSCSHHH
T ss_pred HHHHhhhccc-------------------------------------------------------------hHHHHHHHH
Confidence 4443322110 000013467
Q ss_pred HHHHHHHhc---cCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHH
Q 003433 649 SAILNACSR---CNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNAL 719 (820)
Q Consensus 649 ~~ll~a~~~---~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 719 (820)
..++.+|.. .|++++|.+.|+++...+|.+..+...+...+ ..|++++|...++++++++|.+ ...+..+
T Consensus 416 ~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~ 489 (514)
T 2gw1_A 416 VGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM-EEKLQAI 489 (514)
T ss_dssp HHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH-HHHHHHH
T ss_pred HHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc-HHHHHHH
Confidence 888889999 99999999999999888777666555544444 5677888888888888888754 4434443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=3e-22 Score=221.49 Aligned_cols=383 Identities=14% Similarity=0.071 Sum_probs=241.4
Q ss_pred HHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003433 146 LKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG 225 (820)
Q Consensus 146 l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 225 (820)
...+...+.+.+.+..++..+.+.|++++|+++|+.++... +.+..++..++.++...|++++|...|+++++.++
T Consensus 16 ~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p- 91 (450)
T 2y4t_A 16 ENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD---PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM- 91 (450)
T ss_dssp -------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred cccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-
Confidence 33344344445556666666777777777777777666552 33445666666777777777777777777666543
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHH
Q 003433 226 NTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNL----VTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRIT 301 (820)
Q Consensus 226 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~ 301 (820)
.+..++..++.+|.+.|++++|+++|+++.+.. |+. ..+..++..+... .
T Consensus 92 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~------------------------~ 145 (450)
T 2y4t_A 92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQ------------------------R 145 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHH------------------------H
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHH------------------------H
Confidence 256666667777777777777777777666532 332 3444443331110 1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHH
Q 003433 302 FNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK 381 (820)
Q Consensus 302 ~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 381 (820)
+..+...+...|++++|+.+|+++.+.. +.+..++..++.+|.+.|++++|+++|+++.+... .+..+|..++.+|..
T Consensus 146 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 223 (450)
T 2y4t_A 146 LRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQ 223 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 1222344666777777777777777653 34566777777777777777777777777765432 256777777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHH
Q 003433 382 AGRLDDALNMFSEMKFLGIGLDRVSYNTV------------LSIYAKLGRFEEALLVCKEMESSGIRKD----AVTYNAL 445 (820)
Q Consensus 382 ~g~~~~A~~~~~~m~~~~~~~d~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l 445 (820)
.|++++|+..|+++.+.. +.+...+..+ +..|.+.|++++|+..|+++.+.. +.+ ...|..+
T Consensus 224 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l 301 (450)
T 2y4t_A 224 LGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERI 301 (450)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHH
Confidence 777777777777776653 2333444333 677888888888888888887643 222 3467777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-------
Q 003433 446 LGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDA------- 518 (820)
Q Consensus 446 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~------- 518 (820)
..++.+.|++++|...++++.+.. +.+..+|..+..+|...|++++|...|+++.+..+. +...+..+..+
T Consensus 302 ~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~ 379 (450)
T 2y4t_A 302 CHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQS 379 (450)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcc
Confidence 888888888888888888877652 346778888888888888888888888888775433 55666666532
Q ss_pred -----HHHcC-----CHHHHHHHHHHH-HHCC--CCCCH-------HHHHHHHHHHhhcCchhhhH
Q 003433 519 -----LCKNG-----LVESAVSLLDEM-TKEG--IRPNV-------VTYNSIIDAFGRSATTECTV 564 (820)
Q Consensus 519 -----~~~~g-----~~~~A~~~~~~m-~~~g--~~p~~-------~~~~~ll~~~~~~g~~~~a~ 564 (820)
|...| +.+++.+.|+++ ++.. ..++. ..+..+..+|...|+.++..
T Consensus 380 ~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 380 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp HSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred cchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 33334 567778888873 3321 11221 26667777777777766553
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=1.6e-22 Score=229.26 Aligned_cols=458 Identities=11% Similarity=0.067 Sum_probs=280.4
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 235 (820)
.+.+..+...+.+.|++++|++.|+.++... |.+..++..++.+|.+.|++++|++.|+++++.++ .+..++..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la 100 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD---PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHH
Confidence 4556677777888888888888888887764 44456777777888888888888888888777643 3677777777
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 003433 236 SAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW 315 (820)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 315 (820)
.+|...|++++|+..|+.+ .. .|+.. ...+..+...+ ....|...+++++.... +.
T Consensus 101 ~~~~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~-~~~~a~~~~~~~l~~~~--~~---------------- 156 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERN-LNKQAMKVLNENLSKDE--GR---------------- 156 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHH-C---------------CHHHHH-HHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHH-HHHHHHHHHHHHHHhCc--cc----------------
Confidence 7777778888887777533 21 12211 11222333333 44556666665543210 00
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHH-HHHHHHHHH--------HHcCCHH
Q 003433 316 EAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVV-TYSTMIDGY--------AKAGRLD 386 (820)
Q Consensus 316 ~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~--------~~~g~~~ 386 (820)
.....|+. ..+..+....+.+.+...+.+.... .+... ....+...+ ...|+++
T Consensus 157 -----------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 219 (537)
T 3fp2_A 157 -----------GSQVLPSN----TSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLT 219 (537)
T ss_dssp -------------CCCCCH----HHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred -----------cccccchH----hHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 00001111 1122233333344443333333221 11111 111111111 1124667
Q ss_pred HHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003433 387 DALNMFSEMKFLGIGLD-------RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVR 459 (820)
Q Consensus 387 ~A~~~~~~m~~~~~~~d-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 459 (820)
+|+.+|+++.+.. +.+ ..++..+...+...|++++|+..|+++.+.. |+..+|..+...|...|++++|.
T Consensus 220 ~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~ 296 (537)
T 3fp2_A 220 KSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFF 296 (537)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHH
T ss_pred HHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHH
Confidence 7777777766553 222 2245566667777788888888888877654 45777777888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003433 460 RMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEG 539 (820)
Q Consensus 460 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 539 (820)
..|+++.+.. +.+..++..+...|...|++++|...|+++.+.... +...|..+...|...|++++|+..|+++.+..
T Consensus 297 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 297 KFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374 (537)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888877653 445777888888888888888888888888776543 56778888888888888888888888887752
Q ss_pred CCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccc
Q 003433 540 IRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKE 619 (820)
Q Consensus 540 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (820)
..+..++..+..++.+.|++++|+..++++++..+........+ ..+......+.... .....
T Consensus 375 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~a~~~~~~~-----~~~~~ 437 (537)
T 3fp2_A 375 -PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI-----------GPLIGKATILARQS-----SQDPT 437 (537)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT-----------HHHHHHHHHHHHHH-----TC---
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH-----------HHHHHHHHHHHHHh-----hccch
Confidence 22455778888888888888888888888887766543111000 00111112222110 00000
Q ss_pred hhhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHH
Q 003433 620 NRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVA 682 (820)
Q Consensus 620 ~~~~~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~ 682 (820)
....+++++|+..|+++++ ..| +..++..++.+|.+.|++++|.+.|+++.+.+|......
T Consensus 438 ~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 438 QLDEEKFNAAIKLLTKACE--LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp -CCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred hhhHhHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 1111588899999999987 455 467789999999999999999999999998888765543
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=2.8e-22 Score=221.78 Aligned_cols=333 Identities=14% Similarity=0.096 Sum_probs=198.2
Q ss_pred HHhccCCcchHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHH
Q 003433 132 VTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDL 211 (820)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 211 (820)
+...+....++...-..+...+..+..+..++..+...|++++|++.|+++++.+ +.+..++..++.+|.+.|++++
T Consensus 36 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~ 112 (450)
T 2y4t_A 36 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK---MDFTAARLQRGHLLLKQGKLDE 112 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHH
Confidence 3344444444444444444455567889999999999999999999999999885 4556788999999999999999
Q ss_pred HHHHHHHHHHcCCCCCH---HHHHHHHHH------------HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 003433 212 AKNIFETALNEGYGNTV---YAFSALISA------------YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKG 276 (820)
Q Consensus 212 A~~~~~~~~~~~~~~~~---~~~~~li~~------------~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 276 (820)
|...|+++.+..+ .+. .++..++.. +.+.|++++|+.+|+++.+... .+...+..+...+.+.
T Consensus 113 A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 190 (450)
T 2y4t_A 113 AEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKE 190 (450)
T ss_dssp HHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHC
Confidence 9999999998643 255 777777655 5555666666666665554322 1455555555555555
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003433 277 GVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEI 356 (820)
Q Consensus 277 g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~ 356 (820)
| ++++|++.|+++.+... .+..++..++.+|...|++++|+..|+++.+.. +.+...+..+...
T Consensus 191 g-~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~------------- 254 (450)
T 2y4t_A 191 G-EPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV------------- 254 (450)
T ss_dssp T-CGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH-------------
T ss_pred C-CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHH-------------
Confidence 5 55555555555554322 244555555555555555555555555555432 1122223222000
Q ss_pred HHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 357 MAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD-----RVSYNTVLSIYAKLGRFEEALLVCKEME 431 (820)
Q Consensus 357 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d-----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 431 (820)
. ....+..+...|.+.|++++|+.+|+++.+. .|+ ...+..+...+.+.|++++|+..++++.
T Consensus 255 ----~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 255 ----K------KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp ----H------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred ----H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0 0001112255566666666666666666554 222 2345556666666666666666666665
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH------------HHhcC-----CHHHHH
Q 003433 432 SSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDV------------YSKGG-----LYKEAM 494 (820)
Q Consensus 432 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~------------~~~~g-----~~~~A~ 494 (820)
+.. +.+..+|..+..+|.+.|++++|...|+++++.. +-+...+..+..+ |...| +.+++.
T Consensus 323 ~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~ 400 (450)
T 2y4t_A 323 QME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII 400 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH
T ss_pred HhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHH
Confidence 443 3455666666666666666666666666666542 2234444444422 33333 456667
Q ss_pred HHHHH
Q 003433 495 QIFRE 499 (820)
Q Consensus 495 ~~~~~ 499 (820)
+.|++
T Consensus 401 ~~y~~ 405 (450)
T 2y4t_A 401 KAYRK 405 (450)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77776
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=6.2e-22 Score=224.39 Aligned_cols=426 Identities=13% Similarity=0.055 Sum_probs=320.2
Q ss_pred HHHhccCCcchHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChH
Q 003433 131 HVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVD 210 (820)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 210 (820)
.+...+..+.++...-..+...+.++..+..+...+.+.|++++|++.|++++..+ |.+..++..++.++...|+++
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~ 110 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK---PDHSKALLRRASANESLGNFT 110 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHHcCCHH
Confidence 44556677777777777777777788899999999999999999999999999885 556678899999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHcCCCCHHHHH
Q 003433 211 LAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRY------NLKPNLVTYNAVIDACGKGGVDFKHVV 284 (820)
Q Consensus 211 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~g~~~~~A~ 284 (820)
+|+..|+ ..... |+ .....+..+...+...+|+..++++... ...|+.... ..+.... +.+.+.
T Consensus 111 ~A~~~~~-~~~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~ 180 (537)
T 3fp2_A 111 DAMFDLS-VLSLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSL----ASFFGIF-DSHLEV 180 (537)
T ss_dssp HHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHH----HHHHHTS-CHHHHH
T ss_pred HHHHHHH-HHhcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHH----HHHHHhc-ChHHHH
Confidence 9999997 44332 22 2333455666777788999999999653 123444433 3344444 556555
Q ss_pred HHHHHHHHCCCCCCHH-HHHHHHHHHHh--------CCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHhcC
Q 003433 285 EIFDDMLRNGVQPDRI-TFNSLLAVCSR--------GGLWEAARNLFNEMVHRGIDQD-------IFTYNTLLDAICKGA 348 (820)
Q Consensus 285 ~~~~~m~~~g~~p~~~-~~~~ll~~~~~--------~g~~~~A~~~~~~~~~~g~~~~-------~~~~~~ll~~~~~~g 348 (820)
..+...... .+... ....+...+.. .|++++|..+|+++.+... .+ ..++..+...+...|
T Consensus 181 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 181 SSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT-VDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC-CcchhhHHHHHHHHHHHHHHHhcc
Confidence 554433321 22222 22333333222 2578999999999987642 22 335777778889999
Q ss_pred CHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003433 349 QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCK 428 (820)
Q Consensus 349 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~ 428 (820)
++++|+..|+++.+.. |+..+|..+...|...|++++|++.|+++.+.. +.+..++..+...|...|++++|+..|+
T Consensus 258 ~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 258 NLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999998863 567888999999999999999999999998875 5578889999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---
Q 003433 429 EMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL--- 505 (820)
Q Consensus 429 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--- 505 (820)
++.+.. +.+...|..+...|.+.|++++|..+|+++.+.. +.+...+..+...|...|++++|.+.|+++.+...
T Consensus 335 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 335 KAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 998765 4567889999999999999999999999998763 45677889999999999999999999999876431
Q ss_pred --CCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhh
Q 003433 506 --KADVVLYSALIDALCKN----------GLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGK 573 (820)
Q Consensus 506 --~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~ 573 (820)
......+..+...+.+. |++++|+..|+++++.. ..+..++..+..++.+.|++++|+..++++++.
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 11233345556777888 99999999999998853 235678999999999999999999999999988
Q ss_pred hhhhh
Q 003433 574 QKESA 578 (820)
Q Consensus 574 ~~~~~ 578 (820)
.+...
T Consensus 492 ~~~~~ 496 (537)
T 3fp2_A 492 ARTMD 496 (537)
T ss_dssp C--CH
T ss_pred CCCcH
Confidence 77653
No 13
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=1.9e-17 Score=184.87 Aligned_cols=400 Identities=11% Similarity=0.016 Sum_probs=266.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCCHHHHH
Q 003433 213 KNIFETALNEGYGNTVYAFSALISAYGR----SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGK----GGVDFKHVV 284 (820)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~~A~ 284 (820)
...+....+.| +..++..|...|.. .+++++|+.+|++..+.| +...+..|...|.. .+ ++++|+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~-~~~~A~ 99 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQ-DYAQAV 99 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC-CHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC-CHHHHH
Confidence 44444444432 56666677777766 677777777777776643 55666666666666 56 777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 003433 285 EIFDDMLRNGVQPDRITFNSLLAVCSR----GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICK----GAQMDLAFEI 356 (820)
Q Consensus 285 ~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~ 356 (820)
++|++..+.| +...+..|...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|++.
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 7777777653 55666666666766 667777777777777764 56667777777766 6677777777
Q ss_pred HHHchhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 003433 357 MAEMPAKNISPNVVTYSTMIDGYAK----AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAK----LGRFEEALLVCK 428 (820)
Q Consensus 357 ~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~----~g~~~~A~~~~~ 428 (820)
|++..+.| +...+..|...|.. .++.++|+++|++..+.+ +...+..+...|.. .+++++|...|+
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 77777654 66677777777776 677777877777777654 45666667777765 677778887777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHH
Q 003433 429 EMESSGIRKDAVTYNALLGGYGK----QGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKG-----GLYKEAMQIFRE 499 (820)
Q Consensus 429 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~ 499 (820)
+..+.| +...+..+...|.. .++.++|...|++..+.| +...+..|...|... +++++|+..|++
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 777643 45566666666766 777888888888777654 556667777777766 778888888887
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhh
Q 003433 500 FKQAGLKADVVLYSALIDALCKNG---LVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKE 576 (820)
Q Consensus 500 m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~ 576 (820)
..+.| +...+..|...|...| +.++|++.|++..+.| +...+..|...|.....
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g----------------- 378 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKG----------------- 378 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS-----------------
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC-----------------
Confidence 77754 5566777777777655 6777888887777653 45555555555543100
Q ss_pred hhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 003433 577 SANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACS 656 (820)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~ 656 (820)
..++.++|+..|++..+.| +...+..|+..|.
T Consensus 379 ---------------------------------------------~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~ 410 (490)
T 2xm6_A 379 ---------------------------------------------VKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYY 410 (490)
T ss_dssp ---------------------------------------------SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred ---------------------------------------------CCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 0014556777777777654 4666778888888
Q ss_pred c----cCCHHHHHHHHHHHhhcCCc---hhHHHHHHHhccccchHHHHHHHHHHHhhcCC
Q 003433 657 R----CNSFEDASMLLEELRLFDNQ---VYGVAHGLLMGYRDNIWVQALSLFDEVKLMDS 709 (820)
Q Consensus 657 ~----~g~~~eA~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 709 (820)
+ .++.++|...|+++.+.+++ +......+... ......+|+.+.++.++..|
T Consensus 411 ~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~-~~~~~~~a~~~a~~~~~~~~ 469 (490)
T 2xm6_A 411 YGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL-TAKQLQQAELLSQQYIEKYA 469 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc-CHhHHHHHHHHHHHHHHHHH
Confidence 7 78999999999998877633 44333333222 22344555555555555444
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=1.2e-18 Score=185.64 Aligned_cols=330 Identities=15% Similarity=0.089 Sum_probs=220.1
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 235 (820)
++.+..+...+...|++++|++.|+.+++.. +.+..++..++.++...|++++|...|+++++..+ .+..+|..++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 78 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD---PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHH
Confidence 4567778888999999999999999998874 44566888899999999999999999999988743 3678899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003433 236 SAYGRSGYCQEAISVFNSMKRYNLKP----NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSR 311 (820)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 311 (820)
..|...|++++|+..|+++.+. .| +...+..+.... . ...+..+...+..
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~--------~----------------~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD--------E----------------MQRLRSQALDAFD 132 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH--------H----------------HHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH--------H----------------HHHHHHHHHHHHH
Confidence 9999999999999999999874 34 222333221100 0 0112233445556
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003433 312 GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNM 391 (820)
Q Consensus 312 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 391 (820)
.|++++|..+++++.+.. +.+..++..+...+.+.|++++|+..++++.+... .+..++..+...|...|++++|...
T Consensus 133 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666665543 23455566666666666666666666666655432 2455666666666666666666666
Q ss_pred HHHHHHCCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCH
Q 003433 392 FSEMKFLGIGLDRVSYN------------TVLSIYAKLGRFEEALLVCKEMESSGIRKDA----VTYNALLGGYGKQGKY 455 (820)
Q Consensus 392 ~~~m~~~~~~~d~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~ 455 (820)
|++..+.. +.+...+. .+...+.+.|++++|...++++.+.. +.+. ..+..+..+|.+.|++
T Consensus 211 ~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 211 VRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCH
Confidence 66665542 22222222 23556777788888888887776654 2233 2344566777788888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003433 456 DEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK 521 (820)
Q Consensus 456 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 521 (820)
++|...|++..+.. +.+..++..+...|...|++++|...|+++.+..+. +...+..+..+...
T Consensus 289 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 289 VEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHH
Confidence 88888888777652 346777777888888888888888888888776532 46666666665544
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=1.7e-18 Score=184.52 Aligned_cols=330 Identities=13% Similarity=0.125 Sum_probs=257.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003433 194 KLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDAC 273 (820)
Q Consensus 194 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 273 (820)
..+..++..+...|++++|...|+++++..+ .+..++..++..|...|++++|+..|+++.+.... +...|..+...+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHH
Confidence 3566777888888888888888888877643 36778888888888888888888888888764322 567777777778
Q ss_pred HcCCCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003433 274 GKGGVDFKHVVEIFDDMLRNGVQP----DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQ 349 (820)
Q Consensus 274 ~~~g~~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 349 (820)
...| ++++|...|+++.+. .| +...+..+..... ...+..+...+...|+
T Consensus 82 ~~~~-~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 82 LKQG-KLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHT-CHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred HHcC-ChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence 8888 788888888888765 33 2222222222111 1224446788999999
Q ss_pred HHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003433 350 MDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKE 429 (820)
Q Consensus 350 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~ 429 (820)
+++|+++|+++.+... .+...+..+...|...|++++|+..++++.+.. +.+..++..+...|...|++++|...|++
T Consensus 136 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 136 YTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999987654 378889999999999999999999999999875 56788999999999999999999999999
Q ss_pred HHHCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHH
Q 003433 430 MESSGIRKDAVTYN------------ALLGGYGKQGKYDEVRRMFEQMKADCVSPNL----LTYSTLIDVYSKGGLYKEA 493 (820)
Q Consensus 430 ~~~~~~~~~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A 493 (820)
+.+.. +.+...+. .+...+.+.|++++|...++++.+.. +.+. ..+..+..+|.+.|++++|
T Consensus 214 a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 214 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 98765 44555443 23667999999999999999998863 2233 2355688899999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcC
Q 003433 494 MQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYNSIIDAFGRSA 558 (820)
Q Consensus 494 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g 558 (820)
...|+++.+... .+..+|..+...|.+.|++++|...|+++++. .|+ ...+..+..+....+
T Consensus 292 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 292 IRICSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHH
Confidence 999999998753 37899999999999999999999999999985 455 556777776665443
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=3.2e-17 Score=183.01 Aligned_cols=353 Identities=14% Similarity=0.040 Sum_probs=302.0
Q ss_pred ChhhHHHHHHHHHc----CCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCC
Q 003433 155 GADDYTFLLRELGN----RGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGR----LGKVDLAKNIFETALNEGYGN 226 (820)
Q Consensus 155 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 226 (820)
+++.+..+...|.. .+++++|++.|+++...+ +..++..|...|.. .+++++|...|+++.+.|
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG-----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 46667777777877 899999999999998763 23477888999988 899999999999998864
Q ss_pred CHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHCCCCCC
Q 003433 227 TVYAFSALISAYGR----SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGK----GGVDFKHVVEIFDDMLRNGVQPD 298 (820)
Q Consensus 227 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~~A~~~~~~m~~~g~~p~ 298 (820)
+..++..|...|.. .+++++|+.+|++..+.| +...+..|...|.. .+ ++++|++.|++..+.| +
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~a~~~~---~ 182 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTR-DYVMAREWYSKAAEQG---N 182 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT---C
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHCC---C
Confidence 67888889999988 889999999999998864 67778888888876 66 8999999999999864 6
Q ss_pred HHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHchhCCCCCCHH
Q 003433 299 RITFNSLLAVCSR----GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICK----GAQMDLAFEIMAEMPAKNISPNVV 370 (820)
Q Consensus 299 ~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ 370 (820)
...+..|...|.. .++.++|..+|++..+.| +...+..|...|.. .+++++|+++|++..+.| +..
T Consensus 183 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 256 (490)
T 2xm6_A 183 VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSI 256 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHH
T ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 7888888888887 899999999999999875 67888889998887 889999999999988764 677
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHH
Q 003433 371 TYSTMIDGYAK----AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKL-----GRFEEALLVCKEMESSGIRKDAVT 441 (820)
Q Consensus 371 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~ 441 (820)
.+..+...|.. .++.++|+++|++..+.| +...+..|...|... ++.++|+..|++..+.| +...
T Consensus 257 a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a 330 (490)
T 2xm6_A 257 AQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATA 330 (490)
T ss_dssp HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHH
Confidence 88888888888 899999999999998765 566778888888887 89999999999998865 5677
Q ss_pred HHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003433 442 YNALLGGYGKQG---KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK----GGLYKEAMQIFREFKQAGLKADVVLYSA 514 (820)
Q Consensus 442 ~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 514 (820)
+..+...|.+.| +.++|.+.|++..+.+ +...+..|...|.. .+++++|...|++..+.| +...+..
T Consensus 331 ~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~ 404 (490)
T 2xm6_A 331 QANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQ 404 (490)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHH
Confidence 888888888766 7899999999998874 78888999999988 899999999999998865 6788888
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHCCC
Q 003433 515 LIDALCK----NGLVESAVSLLDEMTKEGI 540 (820)
Q Consensus 515 li~~~~~----~g~~~~A~~~~~~m~~~g~ 540 (820)
|...|.+ .++.++|...|++..+.+.
T Consensus 405 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 405 LGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9999988 8999999999999998653
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=3e-16 Score=182.19 Aligned_cols=361 Identities=11% Similarity=0.112 Sum_probs=252.3
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003433 153 LCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFS 232 (820)
Q Consensus 153 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 232 (820)
..+|+.....+++|...|.+.+|++++++++..+....++..+-+.++.+..+. +..+..+...+.-+. ...
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHH
Confidence 446777778888888888888888888888854321223344555566655555 445554444444321 134
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 003433 233 ALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG 312 (820)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 312 (820)
-+...+...|.+++|..+|++... .....+.++. ..+ ++++|.+++++.. +..+|..+..++.+.
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~-nldrAiE~Aervn------~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIG-NLDRAYEFAERCN------EPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHh-hHHHHHHHHHhcC------CHHHHHHHHHHHHhC
Confidence 477778888888888888888632 3333344443 445 7888888887552 567788888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003433 313 GLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMF 392 (820)
Q Consensus 313 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 392 (820)
|++++|+..|.+. .|...|..++..+.+.|++++|++.|....+.. ++....+.++.+|++.+++++...+.
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 8888888888554 367778888888888888888888888776653 23333445888888888887533332
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003433 393 SEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP 472 (820)
Q Consensus 393 ~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 472 (820)
. .++...|..+.+.|...|++++|..+|... ..|..++..|.+.|++++|.+.+++. .
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~ 1248 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------N 1248 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------C
Confidence 2 445667777888888888888888888774 37888888888888888888888876 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (820)
Q Consensus 473 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 552 (820)
+..+|..+..+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++..+... +-....|+.|..
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELai 1322 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 1322 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHH
Confidence 66888888888888888888887665432 366677788888888999999999888877542 223336655555
Q ss_pred HHh--hcCchhhhHHhHHHHhh
Q 003433 553 AFG--RSATTECTVDDVERDLG 572 (820)
Q Consensus 553 ~~~--~~g~~~~a~~~~~~~l~ 572 (820)
.++ +-+++.++.+.+...+.
T Consensus 1323 LyaKy~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhcc
Confidence 554 44566666666554443
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=5e-17 Score=183.42 Aligned_cols=415 Identities=11% Similarity=0.074 Sum_probs=311.2
Q ss_pred cCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003433 152 KLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAF 231 (820)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 231 (820)
.+.+.+.|..++. +.+.|++++|+.+|++++... |.+..+|...+..+.+.|++++|+.+|++++... |++..|
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~---P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw 82 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF---PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLW 82 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHH
Confidence 4556778888888 478899999999999999874 5667789999999999999999999999999864 578888
Q ss_pred HHHHHH-HHhcCChhHHHH----HHHHHHh-CCCCC-CHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHCCC
Q 003433 232 SALISA-YGRSGYCQEAIS----VFNSMKR-YNLKP-NLVTYNAVIDACGK---------GGVDFKHVVEIFDDMLRNGV 295 (820)
Q Consensus 232 ~~li~~-~~~~g~~~~A~~----~~~~m~~-~~~~p-~~~~~~~ll~~~~~---------~g~~~~~A~~~~~~m~~~g~ 295 (820)
..++.. ....|++++|.+ +|++... .|..| +...|...+....+ .| +++.|..+|++.++...
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~a~~~y~~al~~P~ 161 (530)
T 2ooe_A 83 KCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQ-RITAVRRVYQRGCVNPM 161 (530)
T ss_dssp HHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHH-HHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHh-HHHHHHHHHHHHHhchh
Confidence 888863 345688887776 7777654 35444 56778777776554 57 89999999999998311
Q ss_pred CCCHHHHHHHHHHH-------------HhCCCHHHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHH
Q 003433 296 QPDRITFNSLLAVC-------------SRGGLWEAARNLFNEMV------HRG---IDQD--------IFTYNTLLDAIC 345 (820)
Q Consensus 296 ~p~~~~~~~ll~~~-------------~~~g~~~~A~~~~~~~~------~~g---~~~~--------~~~~~~ll~~~~ 345 (820)
......|....... ...++++.|..++..+. +.. ++|+ ...|...+....
T Consensus 162 ~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~ 241 (530)
T 2ooe_A 162 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEK 241 (530)
T ss_dssp TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHH
Confidence 11123343322211 12456777887777632 211 2333 245666654433
Q ss_pred hc----CCH----HHHHHHHHHchhCCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHCCCCCC
Q 003433 346 KG----AQM----DLAFEIMAEMPAKNISPNVVTYSTMIDGYAK-------AGRLD-------DALNMFSEMKFLGIGLD 403 (820)
Q Consensus 346 ~~----g~~----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~~~~~d 403 (820)
.. ++. +.|+.+|++...... -+...|..++..+.+ .|+++ +|..+|++..+.-.+-+
T Consensus 242 ~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~ 320 (530)
T 2ooe_A 242 SNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 320 (530)
T ss_dssp HCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC
T ss_pred cCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc
Confidence 32 232 477889999887633 367889888888876 69977 99999999986322456
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 404 RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDA-VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLID 482 (820)
Q Consensus 404 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 482 (820)
...|..++..+.+.|++++|..+|+++++.. +.+. ..|..++..+.+.|++++|+.+|++..+.. +.+...|...+.
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~ 398 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHH
Confidence 8889999999999999999999999999864 3343 589999999999999999999999998863 223333333332
Q ss_pred H-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhhcC
Q 003433 483 V-YSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEG-IRPN--VVTYNSIIDAFGRSA 558 (820)
Q Consensus 483 ~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~g 558 (820)
. +...|+.++|..+|++.++..+ .+...|..++..+.+.|+.++|..+|++++..+ ..|+ ...|...+....+.|
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 2 3468999999999999988653 378999999999999999999999999999863 2332 458888888888899
Q ss_pred chhhhHHhHHHHhhhhhhh
Q 003433 559 TTECTVDDVERDLGKQKES 577 (820)
Q Consensus 559 ~~~~a~~~~~~~l~~~~~~ 577 (820)
+.+.+..+..++++..|+.
T Consensus 478 ~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 478 DLASILKVEKRRFTAFREE 496 (530)
T ss_dssp CHHHHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHHHCchh
Confidence 9999999999999988753
No 19
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=9.9e-16 Score=177.91 Aligned_cols=381 Identities=10% Similarity=0.115 Sum_probs=298.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003433 195 LASAMISILGRLGKVDLAKNIFETALNEGY--GNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDA 272 (820)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 272 (820)
-....+..|...|.+.+|+++++++.-.+- ..+....+.|+.+..+. +..+..++.++.... + ...+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~I 1058 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANI 1058 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHH
Confidence 446788999999999999999999984421 24566777788888877 556666666666531 2 3346777
Q ss_pred HHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003433 273 CGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDL 352 (820)
Q Consensus 273 ~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 352 (820)
+...| .+++|..+|++.. -.....+.++. ..+++++|.++.++. .+..+|..+..++.+.|++++
T Consensus 1059 ai~lg-lyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1059 AISNE-LFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHhCC-CHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHH
Confidence 88899 9999999999863 12233333332 778899999998866 247889999999999999999
Q ss_pred HHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 353 AFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMES 432 (820)
Q Consensus 353 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 432 (820)
|++.|.+. -|...|..++.+|.+.|++++|++.|...++.. ++....+.++.+|++.+++++.... ++
T Consensus 1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~ 1191 (1630)
T 1xi4_A 1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN 1191 (1630)
T ss_pred HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh
Confidence 99999775 278889999999999999999999999888763 4444445699999999998864433 22
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003433 433 SGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLY 512 (820)
Q Consensus 433 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 512 (820)
.++...|..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. .+..+|
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aW 1253 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 1253 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHH
Confidence 457778888999999999999999999985 47999999999999999999999987 377999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhh
Q 003433 513 SALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQ 592 (820)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 592 (820)
..+..+|...|++..|......+ .-+...+..++..|.+.|.+++|+.+++.+++..+...
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~-------------- 1314 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLERAHM-------------- 1314 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHh--------------
Confidence 99999999999999999877653 33667788999999999999999999999998764432
Q ss_pred hhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHhccCCHHHHH
Q 003433 593 EAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKP------NVVTFSAILNACSRCNSFEDAS 665 (820)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~P------d~~~~~~ll~a~~~~g~~~eA~ 665 (820)
..++.+..+|.+. .-+++.+++++|..-.. +.| +...|.-+...|.+.|.++.|.
T Consensus 1315 ---gmftELaiLyaKy-------------~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1315 ---GMFTELAILYSKF-------------KPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred ---HHHHHHHHHHHhC-------------CHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 3344444555532 12366678888875433 333 4566889999999999999998
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=7.8e-18 Score=177.25 Aligned_cols=291 Identities=11% Similarity=0.017 Sum_probs=217.2
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003433 154 CGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSA 233 (820)
Q Consensus 154 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 233 (820)
.+++.+..++..+...|++++|+++|+.+++..+ .+...+..++.++...|++++|..+++++.+... .+..+|..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 95 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP---FHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFA 95 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHH
Confidence 4567788888899999999999999999998753 3344667788889999999999999999988753 36788999
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 003433 234 LISAYGRSG-YCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG 312 (820)
Q Consensus 234 li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 312 (820)
+...+...| ++++|+..|+++.+.... +...|..+...+...| ++++|+..|+++.+.... +...+..+...+...
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVES-EHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 999999999 999999999999875432 5677888888888888 899999999988876433 456666688888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCC--------CCCCHHHHHHHHHHHHHcCC
Q 003433 313 GLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN--------ISPNVVTYSTMIDGYAKAGR 384 (820)
Q Consensus 313 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g--------~~p~~~~~~~li~~~~~~g~ 384 (820)
|++++|...++++.+.. +.+..++..+...|.+.|++++|+..|+++.+.. ...+..+|..+..+|.+.|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 88888888888888764 3456777778888888888888888887766531 12234566677777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC
Q 003433 385 LDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGY-GKQGK 454 (820)
Q Consensus 385 ~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~ 454 (820)
+++|+..|+++.+.. +.+...+..+...|.+.|++++|...|+++.+.. +.+...+..+..++ ...|+
T Consensus 252 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 252 YAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCc
Confidence 777777777766653 3345666666667777777777777776665544 34556666666555 34444
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=6.6e-18 Score=177.81 Aligned_cols=290 Identities=12% Similarity=-0.001 Sum_probs=200.2
Q ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003433 262 NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLL 341 (820)
Q Consensus 262 ~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 341 (820)
+...+..+...+...| ++++|+++|+++.+.... +...+..++..+...|++++|..+++++.+.. +.+..++..+.
T Consensus 21 ~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 21 NLDVVVSLAERHYYNC-DFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCTTHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 3344455555555566 666666666666654322 33444455566666667777777766666643 23456666677
Q ss_pred HHHHhcC-CHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 003433 342 DAICKGA-QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRF 420 (820)
Q Consensus 342 ~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~ 420 (820)
..+...| ++++|++.|+++.+.... +...|..+...|...|++++|++.|+++.+.. +.+...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 7777777 677777777776665422 45667777777777777777777777777653 33455666677777788888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHH
Q 003433 421 EEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC--------VSPNLLTYSTLIDVYSKGGLYKE 492 (820)
Q Consensus 421 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~~ 492 (820)
++|...++++.+.. +.+..++..+...|.+.|++++|...|+++.+.. .+.+..++..+...|.+.|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 88888888777655 5567778888888888888888888888776531 13345688888888888899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-hhcCch
Q 003433 493 AMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRP-NVVTYNSIIDAF-GRSATT 560 (820)
Q Consensus 493 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~-~~~g~~ 560 (820)
|...|+++.+.... +...|..+...|.+.|++++|.+.|+++++. .| +..++..+..++ ...|+.
T Consensus 255 A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 255 ALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhCch
Confidence 99998888876543 6778888888999999999999999988874 44 455777777777 455554
No 22
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.7e-17 Score=184.59 Aligned_cols=385 Identities=8% Similarity=-0.071 Sum_probs=210.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhC-----C-
Q 003433 299 RITFNSLLAVCSRGGLWEAARNLFNEMVHR--------GIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK-----N- 364 (820)
Q Consensus 299 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--------g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----g- 364 (820)
...|+.|..++...|++++|++.|++.++. .-.....+|+.+..+|...|++++|+..+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456777777777777777777777776542 11223556666777777777777777776665431 0
Q ss_pred CC-CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHCCCCCC
Q 003433 365 IS-PNVVTYSTMIDGYAKA--GRLDDALNMFSEMKFLGIGLDRVSYNTVLSI---YAKLGRFEEALLVCKEMESSGIRKD 438 (820)
Q Consensus 365 ~~-p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~~ 438 (820)
.. ....++..+..++... +++++|++.|++..+.. +-+...+..+..+ +...++.++|++.+++.++.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 00 1234455444444443 34666666666666553 2233344333333 233455566666666655543 344
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003433 439 AVTYNALLGGYGK----QGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSA 514 (820)
Q Consensus 439 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 514 (820)
..++..+...+.. .|++++|.+++++..... +.+..++..+...|...|++++|...|++..+..+. +..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHH
Confidence 5555544444433 345556666666655542 334555666666666666666666666666655432 4455555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhh
Q 003433 515 LIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEA 594 (820)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 594 (820)
+...|...+....+.. ...........+..++|+..++++++..+...
T Consensus 287 lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------- 334 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEANDNLF---------------- 334 (472)
T ss_dssp HHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTTTC----------------
T ss_pred HHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchh----------------
Confidence 5544432211100000 00000011112234566666666666555432
Q ss_pred ccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHhccCCHHHHHHHHHHH
Q 003433 595 GRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNV--VTFSAILN-ACSRCNSFEDASMLLEEL 671 (820)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~--~~~~~ll~-a~~~~g~~~eA~~~~~~~ 671 (820)
..+..+...|.. .+++++|++.|++.++....+.. ..+..++. ...+.|+.++|+..|+++
T Consensus 335 -~~~~~lg~~~~~---------------~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ka 398 (472)
T 4g1t_A 335 -RVCSILASLHAL---------------ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398 (472)
T ss_dssp -CCHHHHHHHHHH---------------TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred -hhhhhHHHHHHH---------------hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 233334444443 34788999999999885443322 12334443 345779999999999999
Q ss_pred hhcCCchhHHHHHHHhccccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhh
Q 003433 672 RLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVW 745 (820)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 745 (820)
++++|..... .+....++.++++.++.+|.+ +..|+.||.+|...|++++|.+.++++++.+..
T Consensus 399 l~i~~~~~~~---------~~~~~~l~~~~~~~l~~~p~~-~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 399 VKINQKSREK---------EKMKDKLQKIAKMRLSKNGAD-SEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHSCCCCHHH---------HHHHHHHHHHHHHHHHHCC-C-TTHHHHHHHHHHHHHHCC---------------
T ss_pred HhcCcccHHH---------HHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 9988876542 234567788889999999965 677999999999999999999999999887543
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=1.3e-16 Score=180.06 Aligned_cols=434 Identities=10% Similarity=0.046 Sum_probs=254.2
Q ss_pred HHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003433 179 FAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYN 258 (820)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 258 (820)
|+.+++.+ |.+..++..++. +.+.|++++|+.+|+++++. .+.+...|..++..+.+.|++++|..+|+++.+.
T Consensus 2 le~al~~~---P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~- 75 (530)
T 2ooe_A 2 AEKKLEEN---PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK- 75 (530)
T ss_dssp HHHHHHHC---TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT-
T ss_pred hhhHhhhC---CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Confidence 45566653 556678888888 47889999999999999987 4557889999999999999999999999999974
Q ss_pred CCCCHHHHHHHHHHH-HcCCCCHHHHHH----HHHHHHH-CCCCC-CHHHHHHHHHHHHh---------CCCHHHHHHHH
Q 003433 259 LKPNLVTYNAVIDAC-GKGGVDFKHVVE----IFDDMLR-NGVQP-DRITFNSLLAVCSR---------GGLWEAARNLF 322 (820)
Q Consensus 259 ~~p~~~~~~~ll~~~-~~~g~~~~~A~~----~~~~m~~-~g~~p-~~~~~~~ll~~~~~---------~g~~~~A~~~~ 322 (820)
.|+...|...+... ...| +.+.|.+ +|++.+. .|..| +...|...+....+ .|+++.|..+|
T Consensus 76 -~p~~~lw~~~~~~~~~~~~-~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y 153 (530)
T 2ooe_A 76 -VLHIDLWKCYLSYVRETKG-KLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVY 153 (530)
T ss_dssp -CCCHHHHHHHHHHHHHHTT-TSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHHcc-chhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHH
Confidence 47888887777543 3345 5555544 7777764 35443 45677777766554 67889999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------
Q 003433 323 NEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK------ 396 (820)
Q Consensus 323 ~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~------ 396 (820)
++.++.........|..........|. ..+..++. .+.++++.|..+++++.
T Consensus 154 ~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~---------------------~~~~~~~~A~~~~~~~~~~~~~l 211 (530)
T 2ooe_A 154 QRGCVNPMINIEQLWRDYNKYEEGINI-HLAKKMIE---------------------DRSRDYMNARRVAKEYETVMKGL 211 (530)
T ss_dssp HHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH---------------------TTHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhchhhhHHHHHHHHHHHHHhhch-hHHHHHHH---------------------HhhHHHHHHHHHHHHHHHHHHHh
Confidence 998873111112333332221111110 00111110 01233444444444321
Q ss_pred HCC---CCCC--------HHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------
Q 003433 397 FLG---IGLD--------RVSYNTVLSIYAKL----GRF----EEALLVCKEMESSGIRKDAVTYNALLGGYGK------ 451 (820)
Q Consensus 397 ~~~---~~~d--------~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~------ 451 (820)
+.. ++|+ ...|...+...... ++. +.+..+|++.+... +.+...|..++..+.+
T Consensus 212 ~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~ 290 (530)
T 2ooe_A 212 DRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLA 290 (530)
T ss_dssp CSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhh
Confidence 110 1222 13344433322221 121 35566666665543 4456666666666654
Q ss_pred -cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHc
Q 003433 452 -QGKYD-------EVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADV-VLYSALIDALCKN 522 (820)
Q Consensus 452 -~g~~~-------~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~ 522 (820)
.|+++ +|..+|++.++.-.+.+...|..++..+.+.|++++|..+|+++++.... +. ..|..++..+.+.
T Consensus 291 ~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 291 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRA 369 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHH
T ss_pred hccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHh
Confidence 56665 67777777765212335666777777777777777777777777764321 22 4677777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHH
Q 003433 523 GLVESAVSLLDEMTKEGIRPNVVTYNSIIDA-FGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQI 601 (820)
Q Consensus 523 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (820)
|++++|.++|++.++... .+...|...+.. +...|+.++|+.+++++++..|+.. ..|...
T Consensus 370 ~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~-----------------~~~~~~ 431 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP-----------------EYVLAY 431 (530)
T ss_dssp HHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCH-----------------HHHHHH
T ss_pred cCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCH-----------------HHHHHH
Confidence 777777777777776421 122233222222 2346777777777777777655432 111222
Q ss_pred HHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCc
Q 003433 602 IKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLK-IKPN--VVTFSAILNACSRCNSFEDASMLLEELRLFDNQ 677 (820)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~-~~Pd--~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~ 677 (820)
++++. ..|+.++|..+|++.+..+ ..|+ ...|...+......|+.+++.+++..+.+..|+
T Consensus 432 ~~~~~---------------~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 432 IDYLS---------------HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHT---------------TTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHH---------------hCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 22211 1124555666666666542 2332 335666666666778888887777777755553
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=5.7e-18 Score=181.50 Aligned_cols=308 Identities=13% Similarity=0.055 Sum_probs=169.1
Q ss_pred cCChhHHHH-HHHHHHhCCCC-C--CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 003433 241 SGYCQEAIS-VFNSMKRYNLK-P--NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (820)
Q Consensus 241 ~g~~~~A~~-~~~~m~~~~~~-p--~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 316 (820)
.|++++|++ .|++..+.... | +...+..+...+.+.| ++++|+..|+++++.... +..++..+..++...|+++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEG-DLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTT-CHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHH
Confidence 355555555 55544332111 1 2334455555555666 666666666666654322 4555556666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 317 AARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK 396 (820)
Q Consensus 317 ~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 396 (820)
+|+..|+++.+.. +.+..++..+...|...|++++|++.|+++...... +...+..+... ... .
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~-------~ 179 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AGG-------A 179 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-----------------------
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hhh-------h
Confidence 6666666665543 234556666666666666666666666666554321 11111111000 000 0
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003433 397 FLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK--DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNL 474 (820)
Q Consensus 397 ~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 474 (820)
.+ ...+..+...+ ..|++++|+..|+++.+.. +. +..++..+...|.+.|++++|...|++++... +.+.
T Consensus 180 ----~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~ 251 (368)
T 1fch_A 180 ----GL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDY 251 (368)
T ss_dssp -----------CTTHHHH-HHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred ----cc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCH
Confidence 00 00111222222 6666667776666665543 22 46666667777777777777777777666542 3346
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----------CH
Q 003433 475 LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRP----------NV 544 (820)
Q Consensus 475 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----------~~ 544 (820)
.++..+...|...|++++|...|+++.+... .+...|..+...|.+.|++++|...|+++++..... ..
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 6677777777777777777777777766543 256677777777777777777777777776531110 14
Q ss_pred HHHHHHHHHHhhcCchhhhHHhHHHHhhhhh
Q 003433 545 VTYNSIIDAFGRSATTECTVDDVERDLGKQK 575 (820)
Q Consensus 545 ~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~ 575 (820)
.+|..+..++.+.|+.++|..++.++++...
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 361 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADARDLSTLL 361 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHHHHHHHH
Confidence 6777777788888888887777776666544
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=5.9e-18 Score=181.36 Aligned_cols=306 Identities=13% Similarity=-0.032 Sum_probs=163.0
Q ss_pred HcCCCHHHHHH-HHHHHHHcccccCC-hhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 003433 167 GNRGEWSKAIQ-CFAFAVKREERKND-QGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYC 244 (820)
Q Consensus 167 ~~~g~~~~A~~-~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 244 (820)
...|++++|++ .|+.++......+. ....+..++..+.+.|++++|...|+++++..+ .+..+|..++.+|.+.|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCH
Confidence 34567777777 77766654322211 133456777778888888888888888877643 3677777888888888888
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 003433 245 QEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNE 324 (820)
Q Consensus 245 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 324 (820)
++|+..|+++.+.... +..++..+...+...| ++++|+..|++++..... +...+..+... ..
T Consensus 115 ~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------- 177 (368)
T 1fch_A 115 LLAISALRRCLELKPD-NQTALMALAVSFTNES-LQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------- 177 (368)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSTT-TGGGCC---------------------
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------
Confidence 8888888887765432 6677777777777777 788888888877775322 11111111000 00
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003433 325 MVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISP-NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD 403 (820)
Q Consensus 325 ~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d 403 (820)
.. . ....+..+...+ ..|++++|+..|+++.+..... +..++..+...|.+.|++++|+..|+++.+.. +.+
T Consensus 178 ~~----~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 178 GA----G-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp -------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hh----c-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 00 0 000111122222 4555555555555554432111 24455555555555555555555555555442 334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----------CC
Q 003433 404 RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVS----------PN 473 (820)
Q Consensus 404 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------p~ 473 (820)
..++..+...|.+.|++++|+..|+++.+.. +.+..++..+..+|.+.|++++|...|+++.+.... ..
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 4555555555555555555555555555443 334555555555566666666666655555442100 01
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH
Q 003433 474 LLTYSTLIDVYSKGGLYKEAMQIFR 498 (820)
Q Consensus 474 ~~~~~~li~~~~~~g~~~~A~~~~~ 498 (820)
..+|..+..+|...|+.++|..+++
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHH
Confidence 4556666666666666666655554
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=1.3e-16 Score=177.46 Aligned_cols=388 Identities=10% Similarity=-0.057 Sum_probs=230.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-----
Q 003433 227 TVYAFSALISAYGRSGYCQEAISVFNSMKRY-----N--LKP-NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN----- 293 (820)
Q Consensus 227 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~--~~p-~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~----- 293 (820)
.+..||.|...+...|++++|++.|++..+. + ..| ..++|+.+...|...| ++++|...+++..+.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g-~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG-RLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhHhcc
Confidence 4667888999999999999999999887542 1 122 4677888888888888 888888888877642
Q ss_pred C-CC-CCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHchhCCCC
Q 003433 294 G-VQ-PDRITFNSLLAVCSR--GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAI---CKGAQMDLAFEIMAEMPAKNIS 366 (820)
Q Consensus 294 g-~~-p~~~~~~~ll~~~~~--~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~---~~~g~~~~A~~~~~~m~~~g~~ 366 (820)
+ .. ....++..+..++.. .+++++|+..|++.++.. +.+...+..+..++ ...++.++|++.|++..+....
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 1 11 134556655555544 456888888888887764 23455555555543 3456677788888777765322
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003433 367 PNVVTYSTMIDGYAK----AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTY 442 (820)
Q Consensus 367 p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 442 (820)
+..++..+...+.. .|++++|.+++++..... +.+..++..+...|.+.|++++|+..+++..+.. +.+..++
T Consensus 208 -~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 208 -NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp -CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred -chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 45555555544443 456777888888777654 4566777778888888888888888888777654 4556667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003433 443 NALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKN 522 (820)
Q Consensus 443 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 522 (820)
..+..+|...+....+... ..........+..++|...|++..+.+.. +..++..+...|...
T Consensus 285 ~~lg~~y~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRE----------------NGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhHHH----------------HHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHh
Confidence 6666665432111110000 00111111223467888888888776543 566788888999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchH
Q 003433 523 GLVESAVSLLDEMTKEGIRPNVV--TYNSIID-AFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDN 599 (820)
Q Consensus 523 g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (820)
|++++|+..|++.++....+... .+..+.. ...+.|+.++|+..++++++..++.... .
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~------------------~ 409 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK------------------E 409 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH------------------H
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH------------------H
Confidence 99999999999998754332221 2233332 2346778888888888877765543100 0
Q ss_pred HHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCch
Q 003433 600 QIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQV 678 (820)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~ 678 (820)
. ....+..++++.+. ..| +..+|..|+.+|...|++++|++.|+++++.++..
T Consensus 410 ~------------------------~~~~l~~~~~~~l~--~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 410 K------------------------MKDKLQKIAKMRLS--KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463 (472)
T ss_dssp H------------------------HHHHHHHHHHHHHH--HCC-CTTHHHHHHHHHHHHHHCC----------------
T ss_pred H------------------------HHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 0 11123334444444 234 45667778888888888888888887777665554
Q ss_pred hH
Q 003433 679 YG 680 (820)
Q Consensus 679 ~~ 680 (820)
..
T Consensus 464 p~ 465 (472)
T 4g1t_A 464 PS 465 (472)
T ss_dssp --
T ss_pred Cc
Confidence 33
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=5.7e-17 Score=170.36 Aligned_cols=268 Identities=8% Similarity=-0.013 Sum_probs=176.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHc
Q 003433 303 NSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKA 382 (820)
Q Consensus 303 ~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 382 (820)
..+...+...|++++|..+|+++.+.. +.+..++..+...+.+.|++++|++.|+++.+... .+..++..+...|...
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHHHc
Confidence 334444445555555555555554432 22344445555555555555555555555544321 1344555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHH-------------H-HH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 383 GRLDDALNMFSEMKFLGIGLDRVSYNT-------------V-LS-IYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLG 447 (820)
Q Consensus 383 g~~~~A~~~~~~m~~~~~~~d~~~~~~-------------l-i~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 447 (820)
|++++|++.++++.+.. +.+...+.. + .. .+...|++++|...++++.+.. +.+..++..+..
T Consensus 103 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 55555555555555432 111111111 1 22 3667788888888888887665 457788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003433 448 GYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVES 527 (820)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 527 (820)
.|.+.|++++|...++++.+.. +.+..++..+...|...|++++|...|+++.+... .+...|..+...|.+.|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccHHH
Confidence 8888888888888888887753 44677888888888899999999999988887653 367888888899999999999
Q ss_pred HHHHHHHHHHCCCCCC-------------HHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhh
Q 003433 528 AVSLLDEMTKEGIRPN-------------VVTYNSIIDAFGRSATTECTVDDVERDLGKQKESA 578 (820)
Q Consensus 528 A~~~~~~m~~~g~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~ 578 (820)
|.+.|+++.+. .|+ ..+|..+..++.+.|+.++|...++++++..++..
T Consensus 259 A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 320 (327)
T 3cv0_A 259 AAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEF 320 (327)
T ss_dssp HHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHT
T ss_pred HHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence 99999988764 333 56888888899999999999888877777666543
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=2.3e-17 Score=176.64 Aligned_cols=265 Identities=10% Similarity=-0.032 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHH
Q 003433 300 ITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGY 379 (820)
Q Consensus 300 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 379 (820)
..+..+...+.+.|++++|+.+|+++++.. +.+..++..+...|.+.|++++|+..|+++.+.... +..+|..+..+|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 345556666666667777777776666653 335666666777777777777777777766654322 466677777777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 003433 380 AKAGRLDDALNMFSEMKFLGIGLD-----------RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK--DAVTYNALL 446 (820)
Q Consensus 380 ~~~g~~~~A~~~~~~m~~~~~~~d-----------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li 446 (820)
...|++++|+..|+++.+.. |+ ...+..+...|.+.|++++|+..|+++.+.. +. +..++..+.
T Consensus 144 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLG 220 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHH
Confidence 77777777777777766542 21 2233455778888888899999888887765 33 678888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003433 447 GGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVE 526 (820)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 526 (820)
..|.+.|++++|...|+++++.. +.+..+|..+..+|.+.|++++|+..|+++.+..+. +..+|..+..+|.+.|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHH
Confidence 88999999999999998887763 456788888999999999999999999998886543 6888888999999999999
Q ss_pred HHHHHHHHHHHCCC---C--------CCHHHHHHHHHHHhhcCchhhhHHhHHHHh
Q 003433 527 SAVSLLDEMTKEGI---R--------PNVVTYNSIIDAFGRSATTECTVDDVERDL 571 (820)
Q Consensus 527 ~A~~~~~~m~~~g~---~--------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l 571 (820)
+|...|+++++... . .+..+|..+..++...|+.+.+.....+.+
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 99999999876310 0 025678888899999999888876655433
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=5.6e-17 Score=173.63 Aligned_cols=273 Identities=12% Similarity=0.013 Sum_probs=148.6
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003433 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (820)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 237 (820)
.+..+...+.+.|++++|++.|+.++... +.+..++..++.++.+.|++++|+..|+++++..+ .+..+|..++.+
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 142 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD---PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVS 142 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 46666666666777777777777666653 33445666666667777777777777776666532 256666666666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 003433 238 YGRSGYCQEAISVFNSMKRYNLKPNLV-TYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (820)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 316 (820)
|...|++++|+..|+++.+.. |+.. .+..+ ......+..+...+...|+++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~--------------------------~~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNK--------------------------KGSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC---------------------------------------------CCHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhh--------------------------ccchHHHHHHHHHHhhhhhHH
Confidence 666677776666666665521 1110 00000 001122333445555555566
Q ss_pred HHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003433 317 AARNLFNEMVHRGID-QDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEM 395 (820)
Q Consensus 317 ~A~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 395 (820)
+|+.+|+++.+.... .+..++..+...|.+.|++++|++.|+++.+.... +..+|..+..+|.+.|++++|+..|+++
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666555554311 14555556666666666666666666665554322 4556666666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003433 396 KFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI-----------RKDAVTYNALLGGYGKQGKYDEVRRMFEQ 464 (820)
Q Consensus 396 ~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 464 (820)
.+.. +.+..++..+..+|.+.|++++|...|+++.+... ..+..+|..+..++...|+.+.+..+..+
T Consensus 274 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 274 LEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 5542 33455566666666666666666666665543210 01245666666677777777666665544
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=2.8e-16 Score=165.01 Aligned_cols=278 Identities=9% Similarity=-0.038 Sum_probs=184.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 230 AFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVC 309 (820)
Q Consensus 230 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 309 (820)
.+..++..+...|++++|+.+|+++.+.... +...|..+...+...| ++++|.+.|+++++.... +..++..+...+
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 99 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENE-KDGLAIIALNHARMLDPK-DIAVHAALAVSH 99 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCcC-CHHHHHHHHHHH
Confidence 4455566666666666666666666553322 4555556666666666 666666666666554222 455555555566
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHH-HH-HHHHcCCHHH
Q 003433 310 SRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTM-ID-GYAKAGRLDD 387 (820)
Q Consensus 310 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~-~~~~~g~~~~ 387 (820)
...|++++|...++++.+.... +...+..++.. .++......+ .. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHH
Confidence 6666666666666665554211 11111111000 0011111112 22 3667788888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003433 388 ALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKA 467 (820)
Q Consensus 388 A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 467 (820)
|++.++++.+.. +.+...+..+...|.+.|++++|+..++++.+.. +.+..+|..+...|...|++++|...|+++.+
T Consensus 157 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888887764 4467788888888888899999998888887665 55678888888999999999999999998877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 468 DCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKA-----------DVVLYSALIDALCKNGLVESAVSLLDEMT 536 (820)
Q Consensus 468 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (820)
.. +.+..++..+...|.+.|++++|.+.|+++.+..... +...|..+..++.+.|++++|..++++.+
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 53 4467788889999999999999999999887754321 46788889999999999999999887654
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=1.2e-16 Score=167.50 Aligned_cols=283 Identities=15% Similarity=0.195 Sum_probs=132.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHH
Q 003433 203 LGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKH 282 (820)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~ 282 (820)
+-+.|++++|.++++++. +..+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...| ++++
T Consensus 13 l~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g-~~Ee 79 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSG-NWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCC-CHHH
Confidence 346788999999999882 2358999999999999999999999764 47778999999999999 8999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchh
Q 003433 283 VVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPA 362 (820)
Q Consensus 283 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 362 (820)
|+.+++..++. .++..+.+.|+.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|...|..+
T Consensus 80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 99977777664 4467788889999999999999888874 267779999999999999999999999977
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003433 363 KNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTY 442 (820)
Q Consensus 363 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 442 (820)
..|..|+.++.+.|++++|++.+.++ .+..+|..++.+|...|+++.|......+ ..++.-.
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhH
Confidence 36899999999999999999999988 27889999999999999999996655432 3444555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHHHHH
Q 003433 443 NALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKG--GLYKEAMQIFREFKQAGLKA------DVVLYSA 514 (820)
Q Consensus 443 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~ 514 (820)
..++..|.+.|++++|..+++..+... +-....|+.|...|++- +++.+.++.|..- .++++ +...|..
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHH
Confidence 678899999999999999999987654 55677888888888754 4566666665432 11211 4556888
Q ss_pred HHHHHHHcCCHHHHHH
Q 003433 515 LIDALCKNGLVESAVS 530 (820)
Q Consensus 515 li~~~~~~g~~~~A~~ 530 (820)
++-.|.+.++++.|..
T Consensus 288 ~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 288 LVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHhhchHHHHHH
Confidence 8888999999998876
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=5.8e-17 Score=169.86 Aligned_cols=283 Identities=12% Similarity=0.180 Sum_probs=134.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 003433 240 RSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAAR 319 (820)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 319 (820)
+.|++++|.++++++.. ..+|..|+.++.+.| ++++|++.|.+. +|..+|..++..+...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~~------~~vWs~La~A~l~~g-~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKG-MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC------hHHHHHHHHHHHHcC-CHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 67889999999999943 359999999999999 999999999763 47779999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003433 320 NLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLG 399 (820)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 399 (820)
.+++...+. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|..++..|...|++++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING-------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTTC-------C----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988877764 45678899999999999999999988852 67789999999999999999999999976
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003433 400 IGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYST 479 (820)
Q Consensus 400 ~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 479 (820)
..|..|++++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. .+..-...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHH
Confidence 36899999999999999999999988 378999999999999999999976655432 34444557
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHH
Q 003433 480 LIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKN--GLVESAVSLLDEMTKEGIRP------NVVTYNSII 551 (820)
Q Consensus 480 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p------~~~~~~~ll 551 (820)
++..|.+.|++++|..+++..+... .-....|+-|.-+|++- +++.+.++.|..-+ ++.| +...|..+.
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998655 34677888887777764 34555555554221 2222 334677788
Q ss_pred HHHhhcCchhhhHHhH
Q 003433 552 DAFGRSATTECTVDDV 567 (820)
Q Consensus 552 ~~~~~~g~~~~a~~~~ 567 (820)
-.|.+.++++.|+..+
T Consensus 290 ~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 290 FLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHhhchHHHHHHHH
Confidence 8888888888877643
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=1.6e-15 Score=155.85 Aligned_cols=221 Identities=13% Similarity=0.094 Sum_probs=105.6
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHh
Q 003433 268 AVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGI-DQDIFTYNTLLDAICK 346 (820)
Q Consensus 268 ~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~ll~~~~~ 346 (820)
.+..+|...| +++.|+..++.. -.|+..++..+...+...|+.++|++.++++...+. +.+...+..+...|.+
T Consensus 39 ~l~r~yi~~g-~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~ 113 (291)
T 3mkr_A 39 FLYRAYLAQR-KYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY 113 (291)
T ss_dssp HHHHHHHHTT-CHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence 3344444444 444444433221 123344444444455555555555555555544432 2234444444455555
Q ss_pred cCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHcCCHHHH
Q 003433 347 GAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSY---NTVLSIYAKLGRFEEA 423 (820)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~---~~li~~~~~~g~~~~A 423 (820)
.|++++|++.|++ ..+...+..++..|.+.|++++|.+.|+++.+.. |+.... ...+..+...|++++|
T Consensus 114 ~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA 185 (291)
T 3mkr_A 114 DQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDA 185 (291)
T ss_dssp TTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHH
T ss_pred CCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHH
Confidence 5555555555554 1244455555555555555555555555555442 222111 1112222233555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 003433 424 LLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKE-AMQIFREFKQ 502 (820)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~ 502 (820)
..+|+++.+.. +.+...|+.+..++.+.|++++|...|+++++.. +-+..++..++..+...|+.++ +.++++++.+
T Consensus 186 ~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 186 YYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 55555555442 4455555555555555555555555555555432 2344555555555555555543 3455555554
Q ss_pred C
Q 003433 503 A 503 (820)
Q Consensus 503 ~ 503 (820)
.
T Consensus 264 ~ 264 (291)
T 3mkr_A 264 A 264 (291)
T ss_dssp H
T ss_pred h
Confidence 4
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=1.1e-15 Score=157.23 Aligned_cols=250 Identities=16% Similarity=0.088 Sum_probs=123.1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHH
Q 003433 204 GRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHV 283 (820)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A 283 (820)
...|++..|+..++......+.........+.++|...|++++|+..++.. -.|+..++..+...+...+ +.++|
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~-~~~~A 84 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHS-RRDAI 84 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCST-THHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCC-cHHHH
Confidence 344455555544444322211111123333444555555555555444321 1234444444445555555 55555
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchh
Q 003433 284 VEIFDDMLRNGVQP-DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPA 362 (820)
Q Consensus 284 ~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 362 (820)
++.+++++..+..| +...+..+..++...|++++|++.+++ +.+...+..++..|.+.|++++|++.|+++.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55555555443322 233344444555555555555555544 23455555555555555555555555555554
Q ss_pred CCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003433 363 KNISPNVVTY---STMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDA 439 (820)
Q Consensus 363 ~g~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 439 (820)
.. |+.... ..++..+...|++++|+.+|+++.+.. +.+...++.+..++.+.|++++|...|+++++.. +.+.
T Consensus 159 ~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~ 234 (291)
T 3mkr_A 159 QD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHP 234 (291)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred hC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 42 222111 112222333456666666666665552 4455566666666666666666666666655544 4455
Q ss_pred HHHHHHHHHHHhcCCHHH-HHHHHHHHHHC
Q 003433 440 VTYNALLGGYGKQGKYDE-VRRMFEQMKAD 468 (820)
Q Consensus 440 ~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 468 (820)
.++..++..+...|+.++ +.++++++.+.
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 566666666666666544 44566665554
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=3.5e-17 Score=184.34 Aligned_cols=152 Identities=14% Similarity=0.225 Sum_probs=120.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003433 403 DRVSYNTVLSIYAKLGRFEEALLVCKEME---SSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYST 479 (820)
Q Consensus 403 d~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 479 (820)
-..||++||++||+.|++++|.++|++|. ..|+.||++|||+||.+||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45789999999999999999999998775 347889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHH
Q 003433 480 LIDVYSKGGL-YKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN------VVTYNSIID 552 (820)
Q Consensus 480 li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~ll~ 552 (820)
||.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+. .+++..+++ .-++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999887 478889999999999999999999888766654 344444444 2345544 335556666
Q ss_pred HHhhcCc
Q 003433 553 AFGRSAT 559 (820)
Q Consensus 553 ~~~~~g~ 559 (820)
.|.+.+.
T Consensus 281 l~s~d~~ 287 (1134)
T 3spa_A 281 VYAKDGR 287 (1134)
T ss_dssp HHCCCSC
T ss_pred HHccCCC
Confidence 7766653
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=6.3e-17 Score=182.32 Aligned_cols=151 Identities=19% Similarity=0.231 Sum_probs=126.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003433 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKF---LGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNA 444 (820)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 444 (820)
-..||++||++||+.|++++|.++|++|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 467999999999999999999999988764 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHH
Q 003433 445 LLGGYGKQGK-YDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD------VVLYSALID 517 (820)
Q Consensus 445 li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~li~ 517 (820)
||.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+.+ .++..+++ ..++.|+ +.+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999998 5789999999999999999999999997766543 33333333 3344443 344455566
Q ss_pred HHHHcC
Q 003433 518 ALCKNG 523 (820)
Q Consensus 518 ~~~~~g 523 (820)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666554
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.3e-14 Score=143.35 Aligned_cols=224 Identities=14% Similarity=0.091 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC--CC----HHHHH
Q 003433 300 ITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNIS--PN----VVTYS 373 (820)
Q Consensus 300 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~--p~----~~~~~ 373 (820)
..+..+...+...|++++|+.+|+++++.. .+..++..+...|...|++++|++.|++..+.... ++ ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345556666666666666666666666654 45566666666666666666666666665543211 11 35666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003433 374 TMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQG 453 (820)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 453 (820)
.+...|...|++++|+..|+++.+. .++. ..+.+.|++++|...++++.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 6667777777777777777776664 2332 34555566777777777766543 334556666777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003433 454 KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLD 533 (820)
Q Consensus 454 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 533 (820)
++++|...|+++.+.. +.+..++..+...|...|++++|...|+++.+.... +...|..+...|.+.|++++|...|+
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7777777777766643 345666777777777777777777777777665432 56667777777777777777777777
Q ss_pred HHHH
Q 003433 534 EMTK 537 (820)
Q Consensus 534 ~m~~ 537 (820)
++.+
T Consensus 232 ~a~~ 235 (258)
T 3uq3_A 232 AART 235 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.63 E-value=1.4e-14 Score=159.11 Aligned_cols=371 Identities=12% Similarity=0.044 Sum_probs=248.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKV---DLAKNIFETALNEGYGNTVYAFSALISAY 238 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 238 (820)
+...+.+.|++++|++.|+.+...+ .+ .++..++.+|...|+. ++|...|+++.+. +..++..|...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g--~~---~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG--YS---EAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--CC---TGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC--CH---HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 5666788899999999999998764 22 2455677778888888 9999999999864 566777888866
Q ss_pred HhcC-----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003433 239 GRSG-----YCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDF---KHVVEIFDDMLRNGVQPDRITFNSLLAVCS 310 (820)
Q Consensus 239 ~~~g-----~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~---~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 310 (820)
...| ++++|+.+|++..+.|.. ..+..|...|...+ .. .++.+.+......| +......|...|.
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~-~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYP-HSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYR 152 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCG-GGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHH
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 6665 778999999999986643 25666777776554 32 34566666665544 3456667777787
Q ss_pred hCCCHH----HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHc-
Q 003433 311 RGGLWE----AARNLFNEMVHRGIDQDIFTYNTLLDAICKGA---QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKA- 382 (820)
Q Consensus 311 ~~g~~~----~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~- 382 (820)
..+.++ .+..++..... .+...+..|..+|.+.| +.++|++.|++..+.|.. +...+..|...|...
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDAT 227 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGG
T ss_pred cCCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCC
Confidence 777544 44444444433 23448888999999999 999999999999988743 566667777777655
Q ss_pred ---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---
Q 003433 383 ---GRLDDALNMFSEMKFLGIGLDRVSYNTVLSI-Y--AKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQG--- 453 (820)
Q Consensus 383 ---g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--- 453 (820)
+++++|+++|++.. .| +...+..|... | ...+++++|+..|++..+.| +...+..|...|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSS
T ss_pred CCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCC
Confidence 79999999999987 33 55667777766 4 46899999999999998866 6788888888887 55
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cC
Q 003433 454 --KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK----GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK----NG 523 (820)
Q Consensus 454 --~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g 523 (820)
++++|...|++.. . -+...+..|..+|.. ..++++|...|++..+.| +...+..|...|.. ..
T Consensus 300 ~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~ 372 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKP 372 (452)
T ss_dssp CCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCC
T ss_pred CCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCC
Confidence 9999999999887 4 377888888888877 348999999999999876 34456667777764 45
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHH
Q 003433 524 LVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVER 569 (820)
Q Consensus 524 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 569 (820)
+.++|...|++..+.|.. +.......+......++.++|....++
T Consensus 373 d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 373 DPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQ 417 (452)
T ss_dssp CHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 899999999999987632 332222222222333455555554443
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=6.1e-14 Score=141.41 Aligned_cols=230 Identities=13% Similarity=0.090 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 003433 228 VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQ--PDRITFNSL 305 (820)
Q Consensus 228 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~--p~~~~~~~l 305 (820)
...|..+...+...|++++|+.+|+++.+.. .+...|..+...+...| ++++|+..++++++.... ++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~----- 76 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKG-EYETAISTLNDAVEQGREMRADYK----- 76 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCCHH-----
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCcccccchH-----
Confidence 3445555555555555555555555555443 34555555555555555 555555555555442111 0100
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCH
Q 003433 306 LAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRL 385 (820)
Q Consensus 306 l~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 385 (820)
....++..+...|.+.|++++|++.|+++.+.. |+ ...+.+.|++
T Consensus 77 --------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~ 121 (258)
T 3uq3_A 77 --------------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNA 121 (258)
T ss_dssp --------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHH
Confidence 002444444445555555555555555444431 22 1234444555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003433 386 DDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQM 465 (820)
Q Consensus 386 ~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 465 (820)
++|+..++++.... +.+...+..+...+...|++++|+..|+++.+.. +.+..+|..+...|.+.|++++|...|+++
T Consensus 122 ~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 122 EKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 55666655555542 2233455555666666666666666666665543 345566666666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003433 466 KADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQA 503 (820)
Q Consensus 466 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 503 (820)
++.. +.+...|..+...|.+.|++++|...|++..+.
T Consensus 200 l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 200 IEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 5542 334556666666666666666666666666543
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.62 E-value=3.6e-14 Score=139.09 Aligned_cols=112 Identities=12% Similarity=0.032 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003433 453 GKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLL 532 (820)
Q Consensus 453 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 532 (820)
|++++|+..|++.++.. +-+...+..+..+|...|++++|+..|++.++.+ .+...+..+..+|...|++++|+..|
T Consensus 98 g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444444444444331 1223344444444444444444444444444433 24444444444444444444444444
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHhhcCchhhhHHhHHH
Q 003433 533 DEMTKEGIRP-NVVTYNSIIDAFGRSATTECTVDDVER 569 (820)
Q Consensus 533 ~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 569 (820)
+++++. .| +...+..+..++.+.|++++|+..+++
T Consensus 175 ~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 175 AKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHH--STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 444432 12 223444444444444444444444433
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=1.2e-13 Score=146.92 Aligned_cols=252 Identities=12% Similarity=0.066 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 405 VSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGK-YDEVRRMFEQMKADCVSPNLLTYSTLIDV 483 (820)
Q Consensus 405 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 483 (820)
..|..+...+.+.|++++|+..++++++.. +.+..+|+.+..++.+.|+ +++|+..|+++++.. +-+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 456667777777888888888888877665 5567788888888888886 888888888887753 4467788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh-cCchhh
Q 003433 484 YSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR-SATTEC 562 (820)
Q Consensus 484 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~ 562 (820)
|...|++++|+..|+++++.+.. +...|..+..++.+.|++++|+..|+++++.... +...|+.+..++.+ .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 88888888888888888887654 7788888888888888888888888888875322 55678888877777 454455
Q ss_pred hHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCC
Q 003433 563 TVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIK 642 (820)
Q Consensus 563 a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~ 642 (820)
|+. +++++.|++.+. +.
T Consensus 254 A~~-------------------------------------------------------------~~el~~~~~Al~--l~ 270 (382)
T 2h6f_A 254 AVL-------------------------------------------------------------EREVQYTLEMIK--LV 270 (382)
T ss_dssp HHH-------------------------------------------------------------HHHHHHHHHHHH--HS
T ss_pred HHH-------------------------------------------------------------HHHHHHHHHHHH--HC
Confidence 531 123455666655 45
Q ss_pred CC-HHHHHHHHHHHhccC--CHHHHHHHHHHHhhcCCchhHHHHHHHhccc-c--------c-hHHHHHHHHHHH-hhcC
Q 003433 643 PN-VVTFSAILNACSRCN--SFEDASMLLEELRLFDNQVYGVAHGLLMGYR-D--------N-IWVQALSLFDEV-KLMD 708 (820)
Q Consensus 643 Pd-~~~~~~ll~a~~~~g--~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~-~~~~A~~~~~~~-~~~~ 708 (820)
|+ ...|..+..++.+.| ++++|.+.+.++ +.+|....++..+...+. . + .+++|+.+++++ ++++
T Consensus 271 P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 271 PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD 349 (382)
T ss_dssp TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC
Confidence 64 556778888888877 578888888777 667766665555543332 2 2 358889999998 8888
Q ss_pred CCcchhHHHHHHHHHhh
Q 003433 709 SSTASAFYNALTDMLWH 725 (820)
Q Consensus 709 ~~~~~~~~~~l~~~~~~ 725 (820)
|.. ..+|..++..+..
T Consensus 350 P~r-~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 350 TIR-KEYWRYIGRSLQS 365 (382)
T ss_dssp GGG-HHHHHHHHHHHHH
T ss_pred chh-HHHHHHHHHHHHH
Confidence 854 6678777776654
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=1.3e-13 Score=146.47 Aligned_cols=249 Identities=12% Similarity=0.084 Sum_probs=201.8
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGK-VDLAKNIFETALNEGYGNTVYAFSAL 234 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l 234 (820)
.+.|..+...+...|++++|++.|++++..+ |.+..+|..++.++...|+ +++|+..|++++...+. +..+|+.+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~---P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~ 172 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN---AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHH
Confidence 4567778888999999999999999999885 5667789999999999997 99999999999998654 78999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-CC
Q 003433 235 ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSR-GG 313 (820)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g 313 (820)
..++.+.|++++|+..|+++++.... +...|..+..++.+.| ++++|+..|+++++.... +...|+.+..++.. .|
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g-~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFK-LWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT-CCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcC
Confidence 99999999999999999999986544 7889999999999999 999999999999987554 78889999999988 66
Q ss_pred CHHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcC---
Q 003433 314 LWEAA-----RNLFNEMVHRGIDQDIFTYNTLLDAICKGA--QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAG--- 383 (820)
Q Consensus 314 ~~~~A-----~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--- 383 (820)
..++| +..|++.++.. +.+...|+.+..++.+.| ++++|++.+.++ +.. ..+...+..+..+|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccc
Confidence 65777 58888888764 346788888888888887 688888888887 432 336677888888888864
Q ss_pred ------CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHH
Q 003433 384 ------RLDDALNMFSEM-KFLGIGLDRVSYNTVLSIYA 415 (820)
Q Consensus 384 ------~~~~A~~~~~~m-~~~~~~~d~~~~~~li~~~~ 415 (820)
.+++|+++|+++ .+.+ +.....|..+...+.
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 258888888888 5553 333455555555443
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.60 E-value=6.8e-14 Score=153.61 Aligned_cols=345 Identities=11% Similarity=0.028 Sum_probs=243.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003433 198 AMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYC---QEAISVFNSMKRYNLKPNLVTYNAVIDACG 274 (820)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 274 (820)
.+...+.+.|++++|.++|+++.+.| +..++..|..+|...|+. ++|+.+|++..+. +...+..|...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 46777889999999999999998875 445677788888888988 9999999999863 5555666666444
Q ss_pred cCC----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003433 275 KGG----VDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW---EAARNLFNEMVHRGIDQDIFTYNTLLDAICKG 347 (820)
Q Consensus 275 ~~g----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~---~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 347 (820)
..+ .++++|+.+|++..+.|.. ..+..|...|...+.. .++.+.+......| +...+..|...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 433 2678999999999997644 2666777777766543 34555565555555 455677788888888
Q ss_pred CCHHH----HHHHHHHchhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---
Q 003433 348 AQMDL----AFEIMAEMPAKNISPNVVTYSTMIDGYAKAG---RLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKL--- 417 (820)
Q Consensus 348 g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~--- 417 (820)
+.+++ +..+++..... +...+..|...|.+.| +.++|++.|++..+.| .++...+..|...|...
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGS
T ss_pred CCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCC
Confidence 85544 44455554443 4448889999999999 9999999999999988 66777667788887655
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----
Q 003433 418 -GRFEEALLVCKEMESSGIRKDAVTYNALLGG-Y--GKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGG----- 488 (820)
Q Consensus 418 -g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----- 488 (820)
+++++|+..|++.. . -+...+..|... | ...+++++|...|++..+.| +...+..|..+|. .|
T Consensus 230 ~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp SCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCC
Confidence 79999999999987 3 456777777777 4 56899999999999999876 7888888998888 45
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh----cCch
Q 003433 489 LYKEAMQIFREFKQAGLKADVVLYSALIDALCK----NGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR----SATT 560 (820)
Q Consensus 489 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~ 560 (820)
++++|++.|++.. . -+...+..|...|.. ..++++|...|++..+.| +......|..+|.. ..+.
T Consensus 302 d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 302 DAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp CHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCH
T ss_pred CHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCH
Confidence 9999999999988 4 377888888888776 348999999999999876 34455566666643 4578
Q ss_pred hhhHHhHHHHhhhhh
Q 003433 561 ECTVDDVERDLGKQK 575 (820)
Q Consensus 561 ~~a~~~~~~~l~~~~ 575 (820)
++|...++++.+...
T Consensus 375 ~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 375 LNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHCCC
Confidence 889888888776554
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=2.2e-12 Score=131.51 Aligned_cols=227 Identities=10% Similarity=-0.019 Sum_probs=141.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003433 333 DIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK----AGRLDDALNMFSEMKFLGIGLDRVSYN 408 (820)
Q Consensus 333 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~d~~~~~ 408 (820)
+..++..+...|.+.|++++|++.|++..+.+ +..++..+...|.. .+++++|++.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34455555555556666666666666555532 44555555566666 666666666666665553 455556
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003433 409 TVLSIYAK----LGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK----QGKYDEVRRMFEQMKADCVSPNLLTYSTL 480 (820)
Q Consensus 409 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 480 (820)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.+ .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666666 666666666666666543 55566666666666 666666666666666653 45556666
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 481 IDVYSK----GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK----NGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (820)
Q Consensus 481 i~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 552 (820)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666666 667777777777766653 45666666667777 777777777777776653 2556666666
Q ss_pred HHhh----cCchhhhHHhHHHHhhhhhhh
Q 003433 553 AFGR----SATTECTVDDVERDLGKQKES 577 (820)
Q Consensus 553 ~~~~----~g~~~~a~~~~~~~l~~~~~~ 577 (820)
+|.+ .++.++|+..++++++..+..
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 6666 677777777777777665543
No 45
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=1.5e-13 Score=134.74 Aligned_cols=201 Identities=19% Similarity=0.083 Sum_probs=167.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003433 331 DQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTV 410 (820)
Q Consensus 331 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~l 410 (820)
+++...+..+...+.+.|++++|+..|++..+.... +...|..+...+.+.|++++|+..|++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 456778899999999999999999999999987544 78899999999999999999999999999875 5577889999
Q ss_pred HHHHHHc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003433 411 LSIYAKL-----------GRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYST 479 (820)
Q Consensus 411 i~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 479 (820)
...|.+. |++++|+..|++.++.. +.+...|..+..+|...|++++|+..|++.++.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 9999999 99999999999998875 5678899999999999999999999999999876 78899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 480 LIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 480 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
+..+|...|++++|+..|+++++..+. +...+..+...+.+.|++++|+..|++...
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 999999999999999999999987654 788999999999999999999999987643
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=2.5e-12 Score=131.11 Aligned_cols=224 Identities=13% Similarity=0.031 Sum_probs=167.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHchhCCCCCCHHHHH
Q 003433 298 DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICK----GAQMDLAFEIMAEMPAKNISPNVVTYS 373 (820)
Q Consensus 298 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~ 373 (820)
+..++..+...+...|++++|+..|++..+. .+...+..+...|.. .+++++|++.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4556666677777777777777777777763 355667777777777 777777777777777664 667777
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003433 374 TMIDGYAK----AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAK----LGRFEEALLVCKEMESSGIRKDAVTYNAL 445 (820)
Q Consensus 374 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 445 (820)
.+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 778888888887777764 56777777777777 788888888888777754 56667777
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 446 LGGYGK----QGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK----GGLYKEAMQIFREFKQAGLKADVVLYSALID 517 (820)
Q Consensus 446 i~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 517 (820)
...|.. .+++++|...|++..+.+ +...+..+..+|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777 788888888888877764 56777778888887 888888888888887764 3667777778
Q ss_pred HHHH----cCCHHHHHHHHHHHHHCC
Q 003433 518 ALCK----NGLVESAVSLLDEMTKEG 539 (820)
Q Consensus 518 ~~~~----~g~~~~A~~~~~~m~~~g 539 (820)
.|.+ .+++++|++.|++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8877 788888888888887754
No 47
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.57 E-value=5.8e-11 Score=134.54 Aligned_cols=430 Identities=10% Similarity=0.038 Sum_probs=305.5
Q ss_pred hHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCC---hHHHHHHHH
Q 003433 141 SLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGK---VDLAKNIFE 217 (820)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~ 217 (820)
.+..+-+.+..++.+.+.|..++..+.+.+.++.+..+|++++.. .|....+|..-+..-.+.|+ ++.+..+|+
T Consensus 51 ~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~---fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 51 VIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR---FPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 344455556667778999999999999999999999999999988 45556788888999899999 999999999
Q ss_pred HHHHcCC-CCCHHHHHHHHHHHHhcCCh--------hHHHHHHHHHHh-CCC-CC-CHHHHHHHHHHHHc---------C
Q 003433 218 TALNEGY-GNTVYAFSALISAYGRSGYC--------QEAISVFNSMKR-YNL-KP-NLVTYNAVIDACGK---------G 276 (820)
Q Consensus 218 ~~~~~~~-~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~p-~~~~~~~ll~~~~~---------~ 276 (820)
+.+...+ .+++..|...+....+.++. +...++|+.... .|. .+ +...|...+..... .
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 9998631 37899999988877666654 334578887663 465 55 45688877765432 2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------------CCCHHHHHHHHHHHHHC--CCC----------
Q 003433 277 GVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSR-------------GGLWEAARNLFNEMVHR--GID---------- 331 (820)
Q Consensus 277 g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------------~g~~~~A~~~~~~~~~~--g~~---------- 331 (820)
+ +.+.+..+|++++......-..+|......-.. ..+++.|...+.++... ++.
T Consensus 208 ~-~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 208 Q-RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp H-HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred h-HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 3 467889999999863222112333222111101 12344455555554321 211
Q ss_pred -----C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHH-H
Q 003433 332 -----Q-----D---IFTYNTLLDAICKGA-------QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDAL-N 390 (820)
Q Consensus 332 -----~-----~---~~~~~~ll~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~-~ 390 (820)
| + ...|...+..--..+ ..+.+..+|++++.... -+...|...+..+.+.|+.++|. +
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 0 1 245666665543332 12345677888877533 37788888888899999999997 9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---------CC------------CHHHHHHHHHHH
Q 003433 391 MFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI---------RK------------DAVTYNALLGGY 449 (820)
Q Consensus 391 ~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------~~------------~~~~~~~li~~~ 449 (820)
+|++.... ++.+...|...+....+.|++++|.++|+++++... .| ...+|...+...
T Consensus 366 il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 366 YLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 99999875 355666788888999999999999999999875310 13 234688888888
Q ss_pred HhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003433 450 GKQGKYDEVRRMFEQMKAD-CVSPNLLTYSTLIDVYSKG-GLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVES 527 (820)
Q Consensus 450 ~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 527 (820)
.+.|..+.|+.+|.+.++. + ......|...+..-.+. ++.+.|.++|+..++.- .-+...|...+......|+.+.
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-ATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHhCCCHHH
Confidence 8899999999999999876 2 11233343333333444 45899999999998863 3477788899998999999999
Q ss_pred HHHHHHHHHHCCCCC--CHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhh
Q 003433 528 AVSLLDEMTKEGIRP--NVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESA 578 (820)
Q Consensus 528 A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~ 578 (820)
|..+|++.+.....+ ....|...+.--.+.|+.+.+..+.+++.+..|+..
T Consensus 523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 999999999863322 234788888888899999999999999999888753
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=3.3e-13 Score=137.43 Aligned_cols=237 Identities=11% Similarity=0.027 Sum_probs=131.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHH
Q 003433 338 NTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGL--DRVSYNTVLSIYA 415 (820)
Q Consensus 338 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--d~~~~~~li~~~~ 415 (820)
..+...+.+.|++++|+..|+++.+.... +...+..+..+|...|++++|++.++++.+....+ ....|..+...|.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 33445555555555555555555544321 33355555555556666666666665555522111 1223555566666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003433 416 KLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQ 495 (820)
Q Consensus 416 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 495 (820)
..|++++|+..|++..+.. +.+..+|..+...|...|++++|...|++.++. .+.+...+..+...+...+++++|.+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666655543 334556666666666666666666666666554 23345555555522223346666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHhhcCchhhhHH
Q 003433 496 IFREFKQAGLKADVVLYSALIDALCKNGL---VESAVSLLDEMTKEG-IRPN------VVTYNSIIDAFGRSATTECTVD 565 (820)
Q Consensus 496 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~ll~~~~~~g~~~~a~~ 565 (820)
.|+++.+.... +...+..+...+...|+ +++|...|+++.+.. -.|+ ..+|..+...|.+.|++++|+.
T Consensus 164 ~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 164 SFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666665432 45566666666666666 666666666665431 1122 1355666666667777777777
Q ss_pred hHHHHhhhhhhhh
Q 003433 566 DVERDLGKQKESA 578 (820)
Q Consensus 566 ~~~~~l~~~~~~~ 578 (820)
.++++++..|++.
T Consensus 243 ~~~~al~~~p~~~ 255 (272)
T 3u4t_A 243 AWKNILALDPTNK 255 (272)
T ss_dssp HHHHHHHHCTTCH
T ss_pred HHHHHHhcCccHH
Confidence 7777777666553
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=4.8e-13 Score=136.21 Aligned_cols=236 Identities=14% Similarity=0.061 Sum_probs=157.9
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG--NTVYAFSA 233 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~ 233 (820)
++.+......+...|++++|++.|+.+++.. +.+..++..++.++...|++++|+..|++++..... ....+|..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK---YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEY 79 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT---CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 4556667777888888888888888888774 333446777888888888888888888888773211 12445778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 003433 234 LISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGG 313 (820)
Q Consensus 234 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 313 (820)
+...|...|++++|++.|++..+.... +...|..+...+...| ++++|+..|++.++... .+...+..+...+...+
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKG-NFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTT-CHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcc-CHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHH
Confidence 888888888888888888888764332 5567777777888888 78888888887776532 25566666663344445
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHchhCC-CCCC------HHHHHHHHHHHHHcC
Q 003433 314 LWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQ---MDLAFEIMAEMPAKN-ISPN------VVTYSTMIDGYAKAG 383 (820)
Q Consensus 314 ~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~li~~~~~~g 383 (820)
++++|...|+++++.. +.+...+..+...+...|+ +++|+..|++..+.. -.|+ ..+|..+...|.+.|
T Consensus 157 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 157 EYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 7888888887777753 3346666667777777666 666666666655421 0012 134555666666666
Q ss_pred CHHHHHHHHHHHHHC
Q 003433 384 RLDDALNMFSEMKFL 398 (820)
Q Consensus 384 ~~~~A~~~~~~m~~~ 398 (820)
++++|++.|+++.+.
T Consensus 236 ~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 236 DKVKADAAWKNILAL 250 (272)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 666666666666655
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=1e-12 Score=132.13 Aligned_cols=198 Identities=13% Similarity=-0.016 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003433 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYA 415 (820)
Q Consensus 336 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~ 415 (820)
.+..+...+...|++++|++.|+++.+... .+...+..+...|...|++++|++.|+++.+.. +.+...+..+...|.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 344444455555555555555555444321 134445555555555555555555555554442 234445555555555
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003433 416 KLGRFEEALLVCKEMESSGIRK-DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAM 494 (820)
Q Consensus 416 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 494 (820)
..|++++|++.++++.+.+..| +...+..+...|.+.|++++|...|+++.+.. +.+...+..+...|...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555554411112 34445555555555555555555555554432 223455555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 495 QIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 495 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
..|+++.+... .+...+..+...+.+.|++++|.++++++.+
T Consensus 196 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 196 QYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555554432 2445555555555555666666665555554
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=1e-12 Score=132.03 Aligned_cols=206 Identities=14% Similarity=0.021 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 369 VVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGG 448 (820)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 448 (820)
...|..+...|...|++++|++.|+++.+.. +.+...+..+...|...|++++|++.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5678888999999999999999999998874 5578889999999999999999999999998765 5678899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003433 449 YGKQGKYDEVRRMFEQMKADCVSP-NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVES 527 (820)
Q Consensus 449 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 527 (820)
|...|++++|.++|+++...+..| +...+..+...|...|++++|.+.|+++.+.... +...+..++..|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998733344 5678888999999999999999999999887643 68899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhh
Q 003433 528 AVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESA 578 (820)
Q Consensus 528 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~ 578 (820)
|...|+++.+.. ..+...+..+...+.+.|+.++|...++++++..++..
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 999999998753 34667888999999999999999999999998887764
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=2.1e-13 Score=139.00 Aligned_cols=218 Identities=14% Similarity=0.000 Sum_probs=102.0
Q ss_pred CHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003433 279 DFKHVVEIFDDMLRNGVQ---PDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFE 355 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~ 355 (820)
++++|+..|+++++.... .+..++..+...+...|++++|...|+++++.. +.+..++..+...|...|++++|++
T Consensus 20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHH
Confidence 455555555555543211 123445555555555566666666665555542 2245555555555555555555555
Q ss_pred HHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003433 356 IMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI 435 (820)
Q Consensus 356 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 435 (820)
.|+++.+.... +..++..+..+|.+.|++++|+..|+++.+. .|+.......+..+...|++++|...+++.....
T Consensus 99 ~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 174 (275)
T 1xnf_A 99 AFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS- 174 (275)
T ss_dssp HHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 55555543221 3445555555555555555555555555544 2222222223333344455555555554444332
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003433 436 RKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVS---PNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (820)
Q Consensus 436 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (820)
+++...+. ++..+...++.++|...++++...... .+..++..+...|.+.|++++|...|+++.+
T Consensus 175 ~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 175 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 22222222 444444444555555555544332100 0023334444444444444444444444443
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=1.9e-13 Score=139.33 Aligned_cols=248 Identities=10% Similarity=-0.068 Sum_probs=195.6
Q ss_pred HhCCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHH
Q 003433 310 SRGGLWEAARNLFNEMVHRGI---DQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLD 386 (820)
Q Consensus 310 ~~~g~~~~A~~~~~~~~~~g~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 386 (820)
...|++++|+..|+++.+... +.+..++..+...|...|++++|+..|+++.+.... +..+|..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHH
Confidence 346889999999999998632 124678899999999999999999999999887533 6889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003433 387 DALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMK 466 (820)
Q Consensus 387 ~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 466 (820)
+|++.|+++.+.. +.+..++..+...|.+.|++++|+..|+++.+.. |+.......+..+...|++++|...+++..
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999874 4567889999999999999999999999998764 443344445556677799999999998877
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003433 467 ADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKA---DVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN 543 (820)
Q Consensus 467 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 543 (820)
... +++...+. ++..+...++.++|...++++.+..... +...|..++..|.+.|++++|...|+++++. .|+
T Consensus 172 ~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~ 247 (275)
T 1xnf_A 172 EKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVH 247 (275)
T ss_dssp HHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCT
T ss_pred hcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cch
Confidence 653 34444444 7777888889999999999886543211 2578889999999999999999999999985 453
Q ss_pred HHHHHHHHHHHhhcCchhhhHHhH
Q 003433 544 VVTYNSIIDAFGRSATTECTVDDV 567 (820)
Q Consensus 544 ~~~~~~ll~~~~~~g~~~~a~~~~ 567 (820)
. +.....++...|++++|++.+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 3 223355677888888887643
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=2.6e-12 Score=126.22 Aligned_cols=201 Identities=10% Similarity=-0.023 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 334 IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSI 413 (820)
Q Consensus 334 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~ 413 (820)
..++..+...+...|++++|++.|+++.+... .+...+..+...|...|++++|++.++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 44555566666666666666666666555422 145555556666666666666666666655543 3344555555555
Q ss_pred HHHc-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003433 414 YAKL-GRFEEALLVCKEMESSGIRK-DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYK 491 (820)
Q Consensus 414 ~~~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 491 (820)
|... |++++|+..++++.+.+..+ +...+..+...+.+.|++++|...|+++.+.. +.+...+..+...|.+.|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 6666 66666666665555421112 24455555555555666666666665555432 223455555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 492 EAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 492 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
+|...++++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5555555555443212444455555555555555555555555543
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=4.5e-13 Score=133.71 Aligned_cols=200 Identities=12% Similarity=0.080 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 334 IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSI 413 (820)
Q Consensus 334 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~ 413 (820)
...|..+...+.+.|++++|+..|+++.+.... +...+..+...|...|++++|++.|+++.+.. +.+..++..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344555555666666666666666666554322 45566666666666666666666666665543 3355566666666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003433 414 YAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEA 493 (820)
Q Consensus 414 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 493 (820)
|...|++++|+..++++.+.. +.+...+..+...|.+.|++++|..+++++.+.. +.+...+..+...|.+.|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666665544 3455666666666667777777777776666542 33556666666777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 494 MQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (820)
Q Consensus 494 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (820)
...|+++.+... .+..+|..+...|.+.|++++|...|+++.+.
T Consensus 179 ~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 777777666543 25666667777777777777777777777663
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=2.1e-12 Score=126.93 Aligned_cols=202 Identities=10% Similarity=-0.033 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHH
Q 003433 299 RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDG 378 (820)
Q Consensus 299 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 378 (820)
...+..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|++.|+++.+.... +..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Confidence 4445555556666666666666666665542 234555566666666666666666666665554321 45555566666
Q ss_pred HHHc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003433 379 YAKA-GRLDDALNMFSEMKFLGIGLD-RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYD 456 (820)
Q Consensus 379 ~~~~-g~~~~A~~~~~~m~~~~~~~d-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 456 (820)
|... |++++|+..++++.+.+..|+ ...+..+...|...|++++|+..++++.+.. +.+...+..+...|.+.|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 6666 666666666666655211222 3455555566666666666666666655443 334555566666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003433 457 EVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQA 503 (820)
Q Consensus 457 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 503 (820)
+|..+++++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 66666666554421134555555555556666666666666665543
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=5.3e-13 Score=133.20 Aligned_cols=209 Identities=13% Similarity=0.115 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHH
Q 003433 299 RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDG 378 (820)
Q Consensus 299 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 378 (820)
...|..+...+...|++++|..+|+++.+.. +.+..++..+...|.+.|++++|++.|+++.+.... +...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHH
Confidence 3445555555566666666666666665542 234555666666666666666666666665554322 45566666666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003433 379 YAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEV 458 (820)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 458 (820)
|...|++++|++.++++.+.. +.+...+..+...|.+.|++++|+..++++.+.. +.+...+..+...|.+.|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666666553 3455566666666666677777776666665543 34566666666677777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003433 459 RRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYS 513 (820)
Q Consensus 459 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 513 (820)
...|+++.+.. +.+..++..+..+|.+.|++++|.+.|+++.+.... +...+.
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~ 231 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALH 231 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHH
Confidence 77777666542 334566666777777777777777777777665432 344443
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=4.9e-13 Score=145.38 Aligned_cols=276 Identities=14% Similarity=0.069 Sum_probs=148.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHH
Q 003433 376 IDGYAKAGRLDDALNMFSEMKFLGIGLDR----VSYNTVLSIYAKLGRFEEALLVCKEMESS----GI-RKDAVTYNALL 446 (820)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~m~~~~~~~d~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li 446 (820)
...+...|++++|+..|+++.+.. +.+. ..+..+...|...|++++|+..+++..+. +. .....++..+.
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 334444444444444444444432 1111 23444444444444444444444443321 00 11223444555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC-
Q 003433 447 GGYGKQGKYDEVRRMFEQMKADC-----VSPNLLTYSTLIDVYSKGGL-----------------YKEAMQIFREFKQA- 503 (820)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~- 503 (820)
..|...|++++|...|++..+.. ......++..+...|...|+ +++|.+.+++..+.
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 55555555555555555543320 01123345555666666666 66666666554331
Q ss_pred ---CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhhcCchhhhHHhHHHHhhhh
Q 003433 504 ---GL-KADVVLYSALIDALCKNGLVESAVSLLDEMTKEGI-RPN----VVTYNSIIDAFGRSATTECTVDDVERDLGKQ 574 (820)
Q Consensus 504 ---~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~ 574 (820)
+. .....++..+...|...|++++|+..|++.++... ..+ ..++..+..++...|++++|+..+++++...
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 10 11234566677777777777777777777664210 011 1256666667777777777766554444322
Q ss_pred hhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 003433 575 KESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIK-PNVVTFSAILN 653 (820)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~-Pd~~~~~~ll~ 653 (820)
+.. +.. ....++..++.
T Consensus 294 ~~~--------------------------------------------------------------~~~~~~~~~~~~la~ 311 (411)
T 4a1s_A 294 VEL--------------------------------------------------------------GEREVEAQSCYSLGN 311 (411)
T ss_dssp HHT--------------------------------------------------------------TCHHHHHHHHHHHHH
T ss_pred HHc--------------------------------------------------------------CCHHHHHHHHHHHHH
Confidence 211 000 02345677888
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhccccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHH
Q 003433 654 ACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQ 733 (820)
Q Consensus 654 a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 733 (820)
+|...|++++|.++|++++...+... ++......+..++.+|.+.|++++|.
T Consensus 312 ~~~~~g~~~~A~~~~~~al~~~~~~~----------------------------~~~~~~~~~~~la~~~~~~g~~~~A~ 363 (411)
T 4a1s_A 312 TYTLLHEFNTAIEYHNRHLAIAQELG----------------------------DRIGEARACWSLGNAHSAIGGHERAL 363 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHT----------------------------CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCC----------------------------ChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 88899999999998888763211100 00011345888999999999999999
Q ss_pred HHHHHhhhh
Q 003433 734 LVVLEGKRR 742 (820)
Q Consensus 734 ~~~~~~~~~ 742 (820)
++++++.+.
T Consensus 364 ~~~~~al~~ 372 (411)
T 4a1s_A 364 KYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888654
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=5.3e-13 Score=144.56 Aligned_cols=304 Identities=14% Similarity=0.119 Sum_probs=181.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003433 227 TVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPN----LVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITF 302 (820)
Q Consensus 227 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~ 302 (820)
....+..+...+...|++++|+..|+++.+.+.. + ...|..+...+...| ++++|...+++++...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~-------- 77 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLH-DYAKALEYHHHDLTLA-------- 77 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH--------
Confidence 4455555666666666666666666666553221 2 234555555555555 5666666555544210
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC-CC----HHHHHHHH
Q 003433 303 NSLLAVCSRGGLWEAARNLFNEMVHRGID-QDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNIS-PN----VVTYSTMI 376 (820)
Q Consensus 303 ~~ll~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li 376 (820)
...+.. ....++..+...|...|++++|+..+++..+.... .+ ..++..+.
T Consensus 78 -----------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 134 (406)
T 3sf4_A 78 -----------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLG 134 (406)
T ss_dssp -----------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -----------------------HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 000000 01233444444455555555555554444321000 01 23556666
Q ss_pred HHHHHcCC--------------------HHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 377 DGYAKAGR--------------------LDDALNMFSEMKFL----GIG-LDRVSYNTVLSIYAKLGRFEEALLVCKEME 431 (820)
Q Consensus 377 ~~~~~~g~--------------------~~~A~~~~~~m~~~----~~~-~d~~~~~~li~~~~~~g~~~~A~~~~~~~~ 431 (820)
..|...|+ +++|++.+++.... +.. ....++..+...|...|++++|+..+++..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 66666666 67777766665432 111 113456777778888888888888887765
Q ss_pred HCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003433 432 SSGI-RKD----AVTYNALLGGYGKQGKYDEVRRMFEQMKADCV-SPN----LLTYSTLIDVYSKGGLYKEAMQIFREFK 501 (820)
Q Consensus 432 ~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 501 (820)
+... .++ ..++..+...|...|++++|...+++...... ..+ ..++..+...|...|++++|...|++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3210 112 23677788888889999999888888764310 011 4577788889999999999999998876
Q ss_pred HCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhhcCchhhh
Q 003433 502 QAGLK-AD----VVLYSALIDALCKNGLVESAVSLLDEMTKE----GIRPN-VVTYNSIIDAFGRSATTECT 563 (820)
Q Consensus 502 ~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a 563 (820)
+.... .+ ..++..+...|...|++++|...|++..+. +..+. ..++..+...+...|+....
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 53111 12 567788899999999999999999987653 22222 33677777788777776544
No 60
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.49 E-value=3.9e-10 Score=127.79 Aligned_cols=375 Identities=10% Similarity=0.022 Sum_probs=221.8
Q ss_pred HHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hhHHH
Q 003433 172 WSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGY---CQEAI 248 (820)
Q Consensus 172 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~ 248 (820)
..+.+..|+..+..+ +.+...|..++..+.+.+.++.++.+|+.++.. ++.....|...+..-.+.|. ++.+.
T Consensus 48 ~~d~i~~lE~~l~~n---p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ---PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CSCHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred CHHHHHHHHHHHHHC---cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 344566777777774 556779999999999999999999999999987 56688999999999999999 99999
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHHcCCCCH--------HHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHHh-----
Q 003433 249 SVFNSMKRYN-LKPNLVTYNAVIDACGKGGVDF--------KHVVEIFDDMLR-NGV-QPD-RITFNSLLAVCSR----- 311 (820)
Q Consensus 249 ~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~--------~~A~~~~~~m~~-~g~-~p~-~~~~~~ll~~~~~----- 311 (820)
.+|++..... ..|++..|...+.-..+.+ +. +.+.++|+.++. .|. .++ ...|...+.....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~-~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~ 202 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKN-DIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN 202 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHS-CSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhc-ccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccC
Confidence 9999999753 1378888888877655444 32 345578887764 455 443 4677777765432
Q ss_pred ----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003433 312 ----GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDD 387 (820)
Q Consensus 312 ----~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 387 (820)
.++++.+..+|++++......-..+|......--..+. ..+.+++.+. ..+++.
T Consensus 203 ~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~ 260 (679)
T 4e6h_A 203 KFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMN 260 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHH
T ss_pred cHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHH
Confidence 34577888899888863211112333322221111111 0111111110 112222
Q ss_pred HHHHHHHHHHC--CC----C-----------C-----C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCC
Q 003433 388 ALNMFSEMKFL--GI----G-----------L-----D---RVSYNTVLSIYAKLG-------RFEEALLVCKEMESSGI 435 (820)
Q Consensus 388 A~~~~~~m~~~--~~----~-----------~-----d---~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~ 435 (820)
|...+.++... ++ + | + ...|...+..--..+ ..+....+|++.+..-
T Consensus 261 Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~- 339 (679)
T 4e6h_A 261 ARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV- 339 (679)
T ss_dssp HHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-
Confidence 33333322110 10 0 0 0 122333333222211 1233455666665542
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------
Q 003433 436 RKDAVTYNALLGGYGKQGKYDEVR-RMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL--------- 505 (820)
Q Consensus 436 ~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--------- 505 (820)
+-+...|...+..+.+.|+.++|. .+|++.... ++.+...|...+....+.|++++|.++|+.+++...
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 456777777777777777777775 888777664 344555666777777777888888888877765310
Q ss_pred CC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhhc-CchhhhHHhHHHHh
Q 003433 506 KA------------DVVLYSALIDALCKNGLVESAVSLLDEMTKE-GIRPNVVTYNSIIDAFGRS-ATTECTVDDVERDL 571 (820)
Q Consensus 506 ~p------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~l 571 (820)
.| ...+|...+....+.|..+.|..+|.++++. +. .....|...+..-.+. ++.+.|..++++++
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~L 497 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGL 497 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHH
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 12 1235777777777777788888888887765 21 1222333222222232 33666666666666
Q ss_pred hhhhh
Q 003433 572 GKQKE 576 (820)
Q Consensus 572 ~~~~~ 576 (820)
+..+.
T Consensus 498 k~~p~ 502 (679)
T 4e6h_A 498 KYFAT 502 (679)
T ss_dssp HHHTT
T ss_pred HHCCC
Confidence 65544
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=8.2e-13 Score=143.57 Aligned_cols=272 Identities=14% Similarity=0.069 Sum_probs=167.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHchhC----CC-CCCHHHHHH
Q 003433 304 SLLAVCSRGGLWEAARNLFNEMVHRGIDQDI----FTYNTLLDAICKGAQMDLAFEIMAEMPAK----NI-SPNVVTYST 374 (820)
Q Consensus 304 ~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~ 374 (820)
.+...+...|++++|+..|+++++.+. .+. .++..+...|...|++++|++.|++..+. +. .....++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 344445555555555555555555421 121 34555555555566666666555554331 00 112345555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHH
Q 003433 375 MIDGYAKAGRLDDALNMFSEMKFL----G-IGLDRVSYNTVLSIYAKLGR-----------------FEEALLVCKEMES 432 (820)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~m~~~----~-~~~d~~~~~~li~~~~~~g~-----------------~~~A~~~~~~~~~ 432 (820)
+...|...|++++|+..++++.+. + ......++..+...|...|+ +++|+..+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 666666666666666666665432 1 01123456666677777777 7777777666533
Q ss_pred C----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003433 433 S----GI-RKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCV-SPN----LLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (820)
Q Consensus 433 ~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (820)
. +. .....++..+...|...|++++|...|++..+... ..+ ..++..+...|...|++++|...|++..+
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1 10 11234677777788888888888888887654310 012 23677788888888899988888888765
Q ss_pred CCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhhcCchhhhHHhHHHHhh
Q 003433 503 AGLK-----ADVVLYSALIDALCKNGLVESAVSLLDEMTKE----GIRPN-VVTYNSIIDAFGRSATTECTVDDVERDLG 572 (820)
Q Consensus 503 ~~~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~l~ 572 (820)
.... ....++..+...|...|++++|...|+++++. +..+. ..++..+..+|.+.|++++|+..++++++
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3210 11467778888899999999999999888753 11111 33777888888999999999999888887
Q ss_pred hhhh
Q 003433 573 KQKE 576 (820)
Q Consensus 573 ~~~~ 576 (820)
...+
T Consensus 372 ~~~~ 375 (411)
T 4a1s_A 372 LAXX 375 (411)
T ss_dssp HCCH
T ss_pred HHhh
Confidence 6544
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=4.8e-13 Score=144.91 Aligned_cols=307 Identities=17% Similarity=0.093 Sum_probs=191.5
Q ss_pred ChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-C
Q 003433 191 DQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT---VYAFSALISAYGRSGYCQEAISVFNSMKRY----NLKP-N 262 (820)
Q Consensus 191 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~ 262 (820)
.....+...+..+...|++++|...|+++++.+.... ..++..+...|...|++++|+..|++.... +-.+ .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3445667889999999999999999999998754321 467889999999999999999999987642 1111 1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhCCC-------------HHHHHHHHHH
Q 003433 263 LVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQ-PD----RITFNSLLAVCSRGGL-------------WEAARNLFNE 324 (820)
Q Consensus 263 ~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~-------------~~~A~~~~~~ 324 (820)
..++..+...+...| ++++|+..++++++.... .+ ..++..+...|...|+ .+++...
T Consensus 87 ~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~--- 162 (406)
T 3sf4_A 87 AKASGNLGNTLKVLG-NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA--- 162 (406)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH---
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH---
Confidence 345566666666777 777777777766542100 01 2234444444555555 0000000
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003433 325 MVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK----NIS-PNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLG 399 (820)
Q Consensus 325 ~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 399 (820)
+++|++.+++.... +.. ....++..+...|...|++++|+..+++..+..
T Consensus 163 -------------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 163 -------------------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 44444444333211 000 012356666667777777777777776665321
Q ss_pred C-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003433 400 I-GLD----RVSYNTVLSIYAKLGRFEEALLVCKEMESSGI-RKD----AVTYNALLGGYGKQGKYDEVRRMFEQMKADC 469 (820)
Q Consensus 400 ~-~~d----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 469 (820)
. .++ ..++..+...|...|++++|...+++..+... ..+ ..++..+...|.+.|++++|...|++..+..
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0 111 23667777778888888888888877653210 011 4567778888888889988888888875431
Q ss_pred C-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHH
Q 003433 470 V-SPN----LLTYSTLIDVYSKGGLYKEAMQIFREFKQA----GL-KADVVLYSALIDALCKNGLVE 526 (820)
Q Consensus 470 ~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~ 526 (820)
. ..+ ..++..+...|...|++++|.+.|++..+. +. .....++..+...+...|+..
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 0 112 457778888899999999999999887643 11 112445666666776666553
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.45 E-value=1.6e-12 Score=136.35 Aligned_cols=30 Identities=10% Similarity=-0.044 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHhhcCchHHHHHHHHHhhhh
Q 003433 713 SAFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (820)
Q Consensus 713 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (820)
...+..++.+|.+.|++++|..+++++.+.
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 303 GRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 345788999999999999999999887654
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=2e-12 Score=142.77 Aligned_cols=221 Identities=10% Similarity=0.010 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003433 455 YDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLY-KEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLD 533 (820)
Q Consensus 455 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 533 (820)
++++...+++.... .+.+...+..+...|...|++ ++|++.|++.++.... +...|..+...|.+.|++++|+..|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56667777766654 245778888888999999999 9999999999887643 68899999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHh
Q 003433 534 EMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKA 613 (820)
Q Consensus 534 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (820)
++++. .|+..++..+..++...+.-...
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~-------------------------------------------------- 189 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGD-------------------------------------------------- 189 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHH--------------------------------------------------
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChh--------------------------------------------------
Confidence 99985 57777788888777765110000
Q ss_pred cCCccchhhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc--------CCHHHHHHHHHHHhhcCC---chhHH
Q 003433 614 GQGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRC--------NSFEDASMLLEELRLFDN---QVYGV 681 (820)
Q Consensus 614 ~~~~~~~~~~~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~--------g~~~eA~~~~~~~~~~~~---~~~~~ 681 (820)
...+++++|++.|++.++ +.| +...|..++.+|... |++++|.+.|+++++.+| .+..+
T Consensus 190 -------~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 260 (474)
T 4abn_A 190 -------EHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDL 260 (474)
T ss_dssp -------HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHH
T ss_pred -------hhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHH
Confidence 001255567777777766 445 466677888888877 889999999999988888 77776
Q ss_pred HHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHh
Q 003433 682 AHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEG 739 (820)
Q Consensus 682 ~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 739 (820)
..++...+ ..|++++|+..|+++++++|++ ...+..++.++...|++++|.+.+.+.
T Consensus 261 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 261 HLNRATLHKYEESYGEALEGFSQAAALDPAW-PEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 66665555 5788999999999999999965 667999999999999999999876544
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.44 E-value=5e-11 Score=123.70 Aligned_cols=189 Identities=13% Similarity=0.075 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 003433 386 DDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAV-TYNALLGGYGKQGKYDEVRRMFEQ 464 (820)
Q Consensus 386 ~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~ 464 (820)
++|..+|++.++.-.+-+...|..++..+.+.|++++|..+|+++++.. +.+.. +|..++..+.+.|++++|..+|++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5555555555542112233455555555555555555555555555432 11222 555555555555555666555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC
Q 003433 465 MKADCVSPNLLTYSTLIDVYS-KGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEG-IRP 542 (820)
Q Consensus 465 m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p 542 (820)
.++.. +.+...|...+.... ..|++++|.++|++.++..+. +...|..++..+.+.|++++|..+|++++... +.|
T Consensus 160 a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 55542 222333332222211 246666666666666554322 55566666666666666666666666666542 233
Q ss_pred --CHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhh
Q 003433 543 --NVVTYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (820)
Q Consensus 543 --~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (820)
....|..++....+.|+.++|..++.++++..|+.
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 23455666666666666666666666666655543
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=2.5e-11 Score=115.30 Aligned_cols=166 Identities=15% Similarity=0.104 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLG 447 (820)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 447 (820)
+...|..+...|.+.|++++|++.|++..+.. +-+..++..+...|.+.|++++|+..+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 34445555555555555555555555554443 3344445555555555555555555555544433 334444444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003433 448 GYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVES 527 (820)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 527 (820)
.+...++++.|...+.+..... +.+...+..+...|.+.|++++|++.|++.++..+. +..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 5555555555555555544431 233445555555555555555555555555544332 44555555555555555555
Q ss_pred HHHHHHHHHH
Q 003433 528 AVSLLDEMTK 537 (820)
Q Consensus 528 A~~~~~~m~~ 537 (820)
|++.|+++++
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555554
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.42 E-value=4.4e-12 Score=133.04 Aligned_cols=97 Identities=16% Similarity=0.057 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccccCC-hhHHHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCCHHHHH
Q 003433 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKND-QGKLASAMISILGRLGKVDLAKNIFETALNE----G-YGNTVYAFS 232 (820)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~ 232 (820)
+......+...|++++|+..|++++...+..+. ...++..++..+...|++++|...++++... + ......++.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 344455556666666666666666655311100 0234555556666666666666666555432 0 001133444
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 003433 233 ALISAYGRSGYCQEAISVFNSMK 255 (820)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~ 255 (820)
.+...|...|++++|+..|++..
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al 110 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHL 110 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHH
Confidence 44555555555555555554443
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=2.8e-11 Score=114.96 Aligned_cols=172 Identities=14% Similarity=0.065 Sum_probs=154.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 403 DRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLID 482 (820)
Q Consensus 403 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 482 (820)
+..+|..|...|.+.|++++|+..|++.++.. +.+..+|..+..+|.+.|++++|...+.+..... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 56789999999999999999999999998876 6688999999999999999999999999988763 456778888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhh
Q 003433 483 VYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTEC 562 (820)
Q Consensus 483 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 562 (820)
.+...++++.|...+++..+.... +...+..+...|.+.|++++|++.|+++++.. .-+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 999999999999999999887654 78899999999999999999999999999853 2256789999999999999999
Q ss_pred hHHhHHHHhhhhhhhh
Q 003433 563 TVDDVERDLGKQKESA 578 (820)
Q Consensus 563 a~~~~~~~l~~~~~~~ 578 (820)
|+..++++++..|+..
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999888653
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.41 E-value=1.3e-10 Score=120.58 Aligned_cols=218 Identities=10% Similarity=0.058 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHcccccCChhHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003433 173 SKAIQCFAFAVKREERKNDQGKLASAMISILG-------RLGKV-------DLAKNIFETALNEGYGNTVYAFSALISAY 238 (820)
Q Consensus 173 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 238 (820)
++|+.+|++++... |.+..+|..++..+. +.|++ ++|+.+|+++++.-.+.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~---p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 67888999988874 445567777777765 35776 88999999888731234677888888888
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hCCCH
Q 003433 239 GRSGYCQEAISVFNSMKRYNLKPN-LV-TYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCS-RGGLW 315 (820)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~~~~p~-~~-~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~ 315 (820)
.+.|++++|.++|+++.+. .|+ .. .|..++..+.+.| ++++|..+|+++++.... +...|...+.... ..|+.
T Consensus 110 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAE-GIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHH-CHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCH
T ss_pred HhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCH
Confidence 8889999999999988874 343 33 7888888888888 888888888888876432 3444443333322 36888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 003433 316 EAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN-ISP--NVVTYSTMIDGYAKAGRLDDALNMF 392 (820)
Q Consensus 316 ~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~g~~~~A~~~~ 392 (820)
++|..+|+++++.. +.+...|..++..+.+.|++++|+.+|++..... +.| ....|..++..+.+.|+.++|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888887653 3457777778888888888888888888877752 233 3556777777777788888888887
Q ss_pred HHHHHC
Q 003433 393 SEMKFL 398 (820)
Q Consensus 393 ~~m~~~ 398 (820)
+++.+.
T Consensus 265 ~~a~~~ 270 (308)
T 2ond_A 265 KRRFTA 270 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777765
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.41 E-value=1.6e-11 Score=135.67 Aligned_cols=209 Identities=12% Similarity=0.031 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003433 280 FKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW-EAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMA 358 (820)
Q Consensus 280 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 358 (820)
++++++.+++..... ..+...+..+...+...|++ ++|++.|+++++.. +.+...|..+...|.+.|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555544432 22555666666666666666 66666666666543 2235566666666666666666666666
Q ss_pred HchhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CCHH
Q 003433 359 EMPAKNISPNVVTYSTMIDGYAKA---------GRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKL--------GRFE 421 (820)
Q Consensus 359 ~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~--------g~~~ 421 (820)
+..+.. |+...+..+...|... |++++|++.|++..+.. +-+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 665542 4445555555555555 55555555555555442 33344455555555444 4444
Q ss_pred HHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003433 422 EALLVCKEMESSGIR---KDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQ 495 (820)
Q Consensus 422 ~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 495 (820)
+|+..|++..+.. + .+...|..+..+|.+.|++++|.+.|++..+.. +.+...+..+..++...|++++|++
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444332 1 234444444444444444444444444443331 2223333444444444444444433
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.41 E-value=1.5e-12 Score=135.15 Aligned_cols=243 Identities=16% Similarity=0.120 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-
Q 003433 439 AVTYNALLGGYGKQGKYDEVRRMFEQMKAD-------CVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQA------G- 504 (820)
Q Consensus 439 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~- 504 (820)
..++..+...|...|++++|..+|+++.+. .......++..+...|...|++++|...|+++.+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 445555666666666666666666665542 11223445666666677777777777777666543 1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhh
Q 003433 505 LKADVVLYSALIDALCKNGLVESAVSLLDEMTKE------GIRPN-VVTYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (820)
Q Consensus 505 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (820)
......++..+...|...|++++|+..|+++++. +..|+ ..++..+...+...|++++|+..+++++.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~----- 181 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE----- 181 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-----
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----
Confidence 1123456777778888888888888888887653 22232 33677777788888888887765544333
Q ss_pred hhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh
Q 003433 578 ANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPN-VVTFSAILNACS 656 (820)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd-~~~~~~ll~a~~ 656 (820)
++++... +..|+ ..++..++.+|.
T Consensus 182 ------------------------------------------------------~~~~~~~-~~~~~~~~~~~~la~~~~ 206 (311)
T 3nf1_A 182 ------------------------------------------------------IYQTKLG-PDDPNVAKTKNNLASCYL 206 (311)
T ss_dssp ------------------------------------------------------HHHHTSC-TTCHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------------------HHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence 2222110 11232 345778888999
Q ss_pred ccCCHHHHHHHHHHHhhcCCc---------hhHHHHHH--Hh----cc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHH
Q 003433 657 RCNSFEDASMLLEELRLFDNQ---------VYGVAHGL--LM----GY-RDNIWVQALSLFDEVKLMDSSTASAFYNALT 720 (820)
Q Consensus 657 ~~g~~~eA~~~~~~~~~~~~~---------~~~~~~~~--~~----~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 720 (820)
..|++++|.++|+++.+..+. ........ +. .+ ..+.+.+|...++++...+|. ....+..++
T Consensus 207 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~la 285 (311)
T 3nf1_A 207 KQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPT-VTTTLKNLG 285 (311)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHH-HHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCch-HHHHHHHHH
Confidence 999999999999998753221 10010000 00 01 234455677777777777774 467799999
Q ss_pred HHHhhcCchHHHHHHHHHhhhh
Q 003433 721 DMLWHFGQKRGAQLVVLEGKRR 742 (820)
Q Consensus 721 ~~~~~~g~~~~A~~~~~~~~~~ 742 (820)
.+|.+.|++++|.++++++.+.
T Consensus 286 ~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 286 ALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887654
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.38 E-value=9.9e-12 Score=133.62 Aligned_cols=162 Identities=10% Similarity=0.022 Sum_probs=80.7
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC--CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC-C-----CHHHHH
Q 003433 305 LLAVCSRGGLWEAARNLFNEMVHRG--IDQ---DIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNIS-P-----NVVTYS 373 (820)
Q Consensus 305 ll~~~~~~g~~~~A~~~~~~~~~~g--~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-p-----~~~~~~ 373 (820)
....+...|++++|...|++..+.- ... ...++..+...|...|++++|+..+++..+.... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4445566666666666666665531 011 1345566666666666666666666554431000 0 123455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 003433 374 TMIDGYAKAGRLDDALNMFSEMKFLGI-GLD----RVSYNTVLSIYAKLGRFEEALLVCKEMESS----GI-RKDAVTYN 443 (820)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~~d----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~ 443 (820)
.+...|...|++++|++.|++..+... ..+ ..++..+...|...|++++|+..|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 555666666666666666655543200 011 124455555555555555555555554431 11 12234445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 003433 444 ALLGGYGKQGKYDEVRRMFEQMK 466 (820)
Q Consensus 444 ~li~~~~~~g~~~~A~~~~~~m~ 466 (820)
.+...|.+.|++++|...+++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555555443
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.38 E-value=4e-11 Score=128.85 Aligned_cols=302 Identities=10% Similarity=-0.060 Sum_probs=141.8
Q ss_pred HHcCCCHHHHHHHHHHHHHccccc--CChhHHHHHHHHH--HHhcCChHHHH-----------HHHHHHHHcCCCCC---
Q 003433 166 LGNRGEWSKAIQCFAFAVKREERK--NDQGKLASAMISI--LGRLGKVDLAK-----------NIFETALNEGYGNT--- 227 (820)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~l~~~--~~~~g~~~~A~-----------~~~~~~~~~~~~~~--- 227 (820)
+.+.+++++|..+++.+...-... ..+...|..++.. ....++++.+. ..++.+.......+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 445889999999998886643221 2222222332221 11223333333 45555433210000
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCC-C---
Q 003433 228 -VYAFSALISAYGRSGYCQEAISVFNSMKRYNL-KP----NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQ-P--- 297 (820)
Q Consensus 228 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p----~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~-p--- 297 (820)
...+...+..+...|++++|+..|++..+.-. .+ ...+|..+...+...| ++++|+..+++.++.... +
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK-QTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhCccch
Confidence 11122255556666777777777776654200 01 1234555556666666 666666666655532100 0
Q ss_pred --CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHH
Q 003433 298 --DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGID-QDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYST 374 (820)
Q Consensus 298 --~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 374 (820)
...+++.+..+|...|++++|+..|++.++.... .+.. ....++..
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~ 229 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ-------------------------------LMGRTLYN 229 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH-------------------------------HHHHHHHH
Confidence 1234444555555555555555555554432000 0000 00124444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHH
Q 003433 375 MIDGYAKAGRLDDALNMFSEMKFL----GI-GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS----GIRKDAVTYNAL 445 (820)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~m~~~----~~-~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l 445 (820)
+...|...|++++|++.|++..+. +. +....++..+...|.+.|++++|...+++..+. +-+.....+..+
T Consensus 230 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 309 (383)
T 3ulq_A 230 IGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL 309 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555555555555555554431 11 122344555555555555555555555544321 101112224445
Q ss_pred HHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003433 446 LGGYGKQGK---YDEVRRMFEQMKADCVSP-NLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (820)
Q Consensus 446 i~~~~~~g~---~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (820)
...|...|+ +++|..++++. +..+ ....+..+...|.+.|++++|...|++..+
T Consensus 310 ~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 310 KSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555666666 55555555544 1111 223455566666666666666666666543
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.35 E-value=5.8e-12 Score=130.75 Aligned_cols=134 Identities=17% Similarity=0.227 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHccc-----ccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHc------C-C
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREE-----RKNDQGKLASAMISILGRLGKVDLAKNIFETALNE------G-Y 224 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~ 224 (820)
+.+..+...+...|++++|+.+|+.++.... ..+....++..++.+|...|++++|...|++++.. + .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3566677778888888888888888776311 12334456677777777788888888777777653 1 1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 003433 225 GNTVYAFSALISAYGRSGYCQEAISVFNSMKRY------NLKP-NLVTYNAVIDACGKGGVDFKHVVEIFDDML 291 (820)
Q Consensus 225 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~ 291 (820)
+....++..+...|...|++++|+..|+++.+. +-.| ....+..+...+...| ++++|+++|++++
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG-KYEEVEYYYQRAL 180 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 223456666666777777777777777666542 1111 1223444444444444 4445544444444
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.28 E-value=1.2e-09 Score=116.64 Aligned_cols=271 Identities=10% Similarity=-0.008 Sum_probs=168.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcccccCC--hhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHH
Q 003433 160 TFLLRELGNRGEWSKAIQCFAFAVKREERKND--QGKLASAMISILGRLGKVDLAKNIFETALNEGYG-NT----VYAFS 232 (820)
Q Consensus 160 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~ 232 (820)
......+...|++++|+..++.++........ ...++..+...+...|++++|...++++...... .+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 33455667789999999999998876421111 1225667778888899999999999888653111 12 23466
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCC----CHHH
Q 003433 233 ALISAYGRSGYCQEAISVFNSMKRY----NLK--P-NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQP----DRIT 301 (820)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~--p-~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p----~~~~ 301 (820)
.+...+...|++++|.+.+++..+. +.. | ....+..+...+...| ++++|...+++.+...... ...+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA-RLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 7788888899999999888887642 111 2 2345566677777888 8888888888877542211 2345
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-C-HHHHH----HHHHHHHhcCCHHHHHHHHHHchhCCCCCC---HHHH
Q 003433 302 FNSLLAVCSRGGLWEAARNLFNEMVHRGIDQ-D-IFTYN----TLLDAICKGAQMDLAFEIMAEMPAKNISPN---VVTY 372 (820)
Q Consensus 302 ~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~-~-~~~~~----~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~ 372 (820)
+..+...+...|++++|...+++.......+ + ..... .++..+...|++++|...+++......... ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 6677777788888888888888776531111 1 11111 233446677888888888877765432211 2245
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 373 STMIDGYAKAGRLDDALNMFSEMKFL----GIGLDR-VSYNTVLSIYAKLGRFEEALLVCKEME 431 (820)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~d~-~~~~~li~~~~~~g~~~~A~~~~~~~~ 431 (820)
..+...+...|++++|...+++.... +...+. ..+..+..++...|+.++|...+++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56666677777777777777665432 111111 134444555556666666666655543
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.27 E-value=8.4e-10 Score=117.94 Aligned_cols=269 Identities=10% Similarity=0.010 Sum_probs=158.5
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHchhCCC-CCC----HHHHHHHHH
Q 003433 307 AVCSRGGLWEAARNLFNEMVHRGIDQDI----FTYNTLLDAICKGAQMDLAFEIMAEMPAKNI-SPN----VVTYSTMID 377 (820)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~ 377 (820)
..+...|++++|...+++..+.....+. .+++.+...+...|++++|++.+++...... ..+ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3445566666666666666554322222 1345555666666677666666666543200 001 123455666
Q ss_pred HHHHcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHH
Q 003433 378 GYAKAGRLDDALNMFSEMKFL----GIG--L-DRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIR----KDAVTYNALL 446 (820)
Q Consensus 378 ~~~~~g~~~~A~~~~~~m~~~----~~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li 446 (820)
.+...|++++|...+++.... +.. + ....+..+...+...|++++|...+++..+..-. ....++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 677777777777777766542 211 2 2234556667777777777777777776543211 1234566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-C-HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHH
Q 003433 447 GGYGKQGKYDEVRRMFEQMKADCVSP-N-LLTYS----TLIDVYSKGGLYKEAMQIFREFKQAGLKA---DVVLYSALID 517 (820)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~m~~~~~~p-~-~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~ 517 (820)
..+...|++++|...+++.......+ + ..... .++..+...|++++|...+++..+..... ....+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 77777888888888877765431111 1 11111 23344667788888888887776533211 1334566777
Q ss_pred HHHHcCCHHHHHHHHHHHHHC----CCCCCHH-HHHHHHHHHhhcCchhhhHHhHHHHhhhhh
Q 003433 518 ALCKNGLVESAVSLLDEMTKE----GIRPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQK 575 (820)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~~----g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~ 575 (820)
.+...|++++|...++++... |..++.. ++..+..++...|+.++|...+++++....
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 888888888888888877542 2222222 556667777888888888888887776544
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.26 E-value=8.3e-10 Score=108.78 Aligned_cols=213 Identities=8% Similarity=-0.001 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 003433 475 LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNV-VTYNSIIDA 553 (820)
Q Consensus 475 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~ 553 (820)
..+..+...|...|++++|+..|++.++....++...+..+..++...|++++|+..|++.++. .|+. .+|..+..+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHH
Confidence 4444444444444444444444444444332234444444444455555555555555555442 2222 244444445
Q ss_pred HhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHH
Q 003433 554 FGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVF 633 (820)
Q Consensus 554 ~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~ 633 (820)
+...|++++|+..++++++..|....+ ...+...+..++.. ....+++++|++.|
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~-----------------~~~~~~~~~~~g~~--------~~~~~~~~~A~~~~ 140 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATI-----------------EKLYAIYYLKEGQK--------FQQAGNIEKAEENY 140 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHH-----------------HHHHHHHHHHHHHH--------HHHTTCHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHH-----------------HHHHHHHHHHHhHH--------HHHhccHHHHHHHH
Confidence 555555555555554444444432210 01111111111100 11223677788888
Q ss_pred HHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhccccchHHHHHHHHHHHhhcCCC
Q 003433 634 QKMHKLKIKPN---VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSS 710 (820)
Q Consensus 634 ~~m~~~~~~Pd---~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 710 (820)
++.++ +.|+ ...+..++.+|... +..+++++....+........ ......+.+++|+..++++++++|+
T Consensus 141 ~~al~--~~p~~~~~~~~~~l~~~~~~~-----~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 141 KHATD--VTSKKWKTDALYSLGVLFYNN-----GADVLRKATPLASSNKEKYAS-EKAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHTT--SSCHHHHHHHHHHHHHHHHHH-----HHHHHHHHGGGTTTCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHh--cCCCcccHHHHHHHHHHHHHH-----HHHHHHHHHhcccCCHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 88876 5676 34577777777544 344455555443333221111 1112356778888888888888885
Q ss_pred cchhHHHHHHHHH
Q 003433 711 TASAFYNALTDML 723 (820)
Q Consensus 711 ~~~~~~~~l~~~~ 723 (820)
+ ......|..+.
T Consensus 213 ~-~~~~~~l~~i~ 224 (228)
T 4i17_A 213 R-TEIKQMQDQVK 224 (228)
T ss_dssp C-HHHHHHHHHHH
T ss_pred C-HHHHHHHHHHH
Confidence 5 55566666554
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.26 E-value=8e-10 Score=104.42 Aligned_cols=163 Identities=12% Similarity=0.082 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 335 FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIY 414 (820)
Q Consensus 335 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~ 414 (820)
..+..+...+...|++++|++.|+++.+... .+...+..+...|...|++++|...++++.+.. +.+...+..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3444555555666666666666666554422 144555555555555666666666555555442 33444455555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003433 415 AKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAM 494 (820)
Q Consensus 415 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 494 (820)
...|++++|.+.++++.+.. +.+...+..+...|.+.|++++|..+++++.+.. +.+...+..+...|...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555554432 2344444444444555555555555554444331 223344444444444444444444
Q ss_pred HHHHHHH
Q 003433 495 QIFREFK 501 (820)
Q Consensus 495 ~~~~~m~ 501 (820)
..++++.
T Consensus 165 ~~~~~~~ 171 (186)
T 3as5_A 165 PHFKKAN 171 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.25 E-value=6.3e-10 Score=119.18 Aligned_cols=163 Identities=11% Similarity=0.070 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHH
Q 003433 336 TYNTLLDAICKGAQMDLAFEIMAEMPAK----NIS-PNVVTYSTMIDGYAKAGRLDDALNMFSEMKF-----LGIGLDRV 405 (820)
Q Consensus 336 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~d~~ 405 (820)
+++.+...|...|++++|++.|++..+. +.. ....++..+..+|...|++++|++.|++..+ .. +....
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHH
Confidence 4444555555555555555555444321 100 0123455555666666666666666665554 22 22245
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHH
Q 003433 406 SYNTVLSIYAKLGRFEEALLVCKEMESSG----IRKDAVTYNALLGGYGKQGK---YDEVRRMFEQMKADCVSPN-LLTY 477 (820)
Q Consensus 406 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~ 477 (820)
++..+...|.+.|++++|...+++..+.. -+.....+..+...|...++ +.+|..++++. +..++ ...+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 339 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHH
Confidence 55666666666666666666666654421 11123344455555556666 55555555542 11111 2344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 003433 478 STLIDVYSKGGLYKEAMQIFREFKQ 502 (820)
Q Consensus 478 ~~li~~~~~~g~~~~A~~~~~~m~~ 502 (820)
..+...|.+.|++++|...|++..+
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5666677777777777777766654
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.25 E-value=5.6e-10 Score=105.49 Aligned_cols=166 Identities=17% Similarity=0.118 Sum_probs=89.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003433 407 YNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK 486 (820)
Q Consensus 407 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 486 (820)
+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...|..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 3444445555555555555555544332 2344555555555555555555555555554431 2344555555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHh
Q 003433 487 GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDD 566 (820)
Q Consensus 487 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 566 (820)
.|++++|.+.|+++.+... .+...+..++..+...|++++|...|+++.+.. ..+..++..+...+...|++++|+..
T Consensus 89 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 5666666665555555432 245555555666666666666666666655532 22344555666666666666666666
Q ss_pred HHHHhhhhhh
Q 003433 567 VERDLGKQKE 576 (820)
Q Consensus 567 ~~~~l~~~~~ 576 (820)
++++++..++
T Consensus 167 ~~~~~~~~~~ 176 (186)
T 3as5_A 167 FKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHcCCC
Confidence 6666655544
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.24 E-value=2.5e-10 Score=130.99 Aligned_cols=163 Identities=12% Similarity=0.072 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 370 VTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGY 449 (820)
Q Consensus 370 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 449 (820)
.+|+.|...|.+.|++++|++.|++.++.. +-+..+|..|..+|.+.|++++|+..|++.++.. +.+...|+.+..+|
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344555555555555555555555544442 2234444455555555555555555555444433 23344444455555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003433 450 GKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAV 529 (820)
Q Consensus 450 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 529 (820)
.+.|++++|++.|++.++.. +-+...|+.+..+|.+.|++++|++.|++.++..+. +...|..++..|...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHH
Confidence 55555555555554444431 223444444444444444444444444444443322 3444444444444444444444
Q ss_pred HHHHHHH
Q 003433 530 SLLDEMT 536 (820)
Q Consensus 530 ~~~~~m~ 536 (820)
+.+++++
T Consensus 166 ~~~~kal 172 (723)
T 4gyw_A 166 ERMKKLV 172 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.23 E-value=1.7e-09 Score=115.84 Aligned_cols=231 Identities=12% Similarity=-0.014 Sum_probs=163.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHchhC----C-CCC-CHHHH
Q 003433 304 SLLAVCSRGGLWEAARNLFNEMVHRGI-DQ----DIFTYNTLLDAICKGAQMDLAFEIMAEMPAK----N-ISP-NVVTY 372 (820)
Q Consensus 304 ~ll~~~~~~g~~~~A~~~~~~~~~~g~-~~----~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g-~~p-~~~~~ 372 (820)
.....+...|++++|+..|+++.+... .+ ...++..+...|...|+++.|+..+++..+. + ..+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344455666777777777776654310 11 2456677777777777777777777765532 1 011 24578
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 003433 373 STMIDGYAKAGRLDDALNMFSEMKFL----GIGL-DRVSYNTVLSIYAKLGRFEEALLVCKEMES-----SGIRKDAVTY 442 (820)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 442 (820)
+.+...|...|++++|++.|++..+. +... ...++..+...|...|++++|+..|++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 88999999999999999999887653 2111 235678889999999999999999998876 33 3347788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHH
Q 003433 443 NALLGGYGKQGKYDEVRRMFEQMKADC----VSPNLLTYSTLIDVYSKGGL---YKEAMQIFREFKQAGLKA-DVVLYSA 514 (820)
Q Consensus 443 ~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p-~~~~~~~ 514 (820)
..+...|.+.|++++|...+++..+.. .+.....+..+...|...++ +.+|+..+++. +..+ ....+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 889999999999999999999987642 12224456667777778888 77777777763 2222 2346677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 515 LIDALCKNGLVESAVSLLDEMTKE 538 (820)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~ 538 (820)
+...|...|++++|...|+++.+.
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 889999999999999999998753
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.23 E-value=4e-10 Score=129.37 Aligned_cols=166 Identities=11% Similarity=0.030 Sum_probs=117.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 333 DIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLS 412 (820)
Q Consensus 333 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~ 412 (820)
+...|+.|...|.+.|++++|++.|++.++.... +..+|..+..+|.+.|++++|++.|++.++.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3566777777777777777777777777765332 46677777777777777777777777777653 345667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003433 413 IYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKE 492 (820)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 492 (820)
+|.+.|++++|++.|++.++.. +.+...|+.+..+|.+.|++++|++.|++.++.. +-+...+..+..+|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 7777777777777777776654 4556777777777777777777777777776652 3346677777777777777777
Q ss_pred HHHHHHHHHH
Q 003433 493 AMQIFREFKQ 502 (820)
Q Consensus 493 A~~~~~~m~~ 502 (820)
|.+.++++++
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776655
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.22 E-value=2.1e-10 Score=116.85 Aligned_cols=231 Identities=11% Similarity=0.065 Sum_probs=143.3
Q ss_pred hcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHH
Q 003433 486 KGGLYKEAMQIFREFKQ-------AGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE------GIRPN-VVTYNSII 551 (820)
Q Consensus 486 ~~g~~~~A~~~~~~m~~-------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll 551 (820)
..|++++|+..|++.++ .+......++..+...|...|++++|+..|+++++. +-.|+ ..++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555555555554443 221224567888888899999999999999888754 22233 34788899
Q ss_pred HHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHH
Q 003433 552 DAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILG 631 (820)
Q Consensus 552 ~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~ 631 (820)
.+|...|++++|+..+++++.......+- ... .....+..+...|. ..+++++|+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~---~~~~~~~~la~~~~---------------~~g~~~~A~~ 148 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGK------FHP---DVAKQLNNLALLCQ---------------NQGKAEEVEY 148 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCT------TCH---HHHHHHHHHHHHHH---------------TTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCC------CCh---HHHHHHHHHHHHHH---------------HcCCHHHHHH
Confidence 99999999999999999998864321100 000 00012222222222 2348889999
Q ss_pred HHHHHHHC------CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcC---------CchhHHHHHHHh-----cc-
Q 003433 632 VFQKMHKL------KIKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFD---------NQVYGVAHGLLM-----GY- 689 (820)
Q Consensus 632 ~~~~m~~~------~~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~---------~~~~~~~~~~~~-----~~- 689 (820)
.|++++.. +-.|+ ..++..++.+|...|++++|.++|+++.+.. +....+...... ..
T Consensus 149 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (283)
T 3edt_B 149 YYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKR 228 (283)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCch
Confidence 99999874 22443 4568899999999999999999999987541 111111111110 00
Q ss_pred -ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhh
Q 003433 690 -RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKR 741 (820)
Q Consensus 690 -~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 741 (820)
....+.++...++.+....| .....+..|+.+|.+.|++++|..+++++.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 229 RDSAPYGEYGSWYKACKVDSP-TVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CC------------CCCCCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12345556666655554445 3466799999999999999999999988764
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.18 E-value=2.3e-09 Score=105.61 Aligned_cols=191 Identities=12% Similarity=0.065 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 335 FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIY 414 (820)
Q Consensus 335 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~ 414 (820)
..+..+...+.+.|++++|++.|++..+....++...+..+..+|...|++++|++.|++..+.. +-+...+..+...|
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHH
Confidence 33333444444444444444444444433221233333334444444444444444444444432 22233444444444
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHH
Q 003433 415 AKLGRFEEALLVCKEMESSGIRKDA-------VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPN---LLTYSTLIDVY 484 (820)
Q Consensus 415 ~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~ 484 (820)
...|++++|+..|++..+.. +.+. ..|..+...+.+.|++++|+..|++.++. .|+ ...+..+..+|
T Consensus 87 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHH
Confidence 44444444444444444332 2222 23444555555555666666666555543 232 33444455554
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 485 SKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 485 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
...| ..+++++...+. .+...|..+. ....+.+++|+..|++.++
T Consensus 164 ~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 164 YNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 3322 223333333321 1333333222 2233446666666666665
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.10 E-value=2.7e-09 Score=109.55 Aligned_cols=163 Identities=9% Similarity=0.005 Sum_probs=98.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHH
Q 003433 413 IYAKLGRFEEALLVCKEMESS----GIRKD-AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVS-PN----LLTYSTLID 482 (820)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~ 482 (820)
.|...|++++|...|++..+. |-.++ ..+|+.+..+|.+.|++++|+..|++.++.... .+ ..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555444321 10111 345555666666666666666666655432100 01 346677778
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHH
Q 003433 483 VYSKG-GLYKEAMQIFREFKQAGLKA-D----VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNV------VTYNSI 550 (820)
Q Consensus 483 ~~~~~-g~~~~A~~~~~~m~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~l 550 (820)
+|... |++++|+..|++.++..... + ..+|..++..|.+.|++++|+..|+++.+....... .+|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 88888888888876532110 1 356778888888999999999999988875322211 156667
Q ss_pred HHHHhhcCchhhhHHhHHHHhhhhh
Q 003433 551 IDAFGRSATTECTVDDVERDLGKQK 575 (820)
Q Consensus 551 l~~~~~~g~~~~a~~~~~~~l~~~~ 575 (820)
..++...|++++|+..++++++..|
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p 230 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDP 230 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 7778888888888887777776544
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.09 E-value=8.4e-10 Score=112.33 Aligned_cols=156 Identities=16% Similarity=0.089 Sum_probs=81.0
Q ss_pred hCCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhC------CCC-CCHHHHHHHH
Q 003433 311 RGGLWEAARNLFNEMVHR-------GIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK------NIS-PNVVTYSTMI 376 (820)
Q Consensus 311 ~~g~~~~A~~~~~~~~~~-------g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------g~~-p~~~~~~~li 376 (820)
..|++++|+.+|++.++. ..+....++..+...|...|++++|+..|+++.+. +-. ....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 455666666666555442 11123455666666666667777776666665532 111 1234555666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------C-CCCCHHHH
Q 003433 377 DGYAKAGRLDDALNMFSEMKFL------G-IGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS------G-IRKDAVTY 442 (820)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~------~-~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~ 442 (820)
..|...|++++|++.|+++... . .+....++..+...|...|++++|+..++++.+. + .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 6666666666666666665443 0 0112344555555555556666666655555432 0 01123344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 003433 443 NALLGGYGKQGKYDEVRRMFEQMK 466 (820)
Q Consensus 443 ~~li~~~~~~g~~~~A~~~~~~m~ 466 (820)
..+...|.+.|++++|..+|+++.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555555544
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.08 E-value=9.3e-09 Score=103.60 Aligned_cols=210 Identities=11% Similarity=0.049 Sum_probs=130.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC-HHHH
Q 003433 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD---VVLYSALIDALCKNGLVESAVSLLDEMTKEGI-RPN-VVTY 547 (820)
Q Consensus 473 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~ 547 (820)
+...+-.+...+.+.|++++|+..|+++++..+. + ...+..+..+|.+.|++++|+..|+++++... .|+ ..++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4555556666666777777777777777665422 2 45666677777777777777777777766411 112 2355
Q ss_pred HHHHHHHhh--------cCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccc
Q 003433 548 NSIIDAFGR--------SATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKE 619 (820)
Q Consensus 548 ~~ll~~~~~--------~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (820)
..+..++.+ .|++++|+..++++++..|+.....
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~-------------------------------------- 134 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD-------------------------------------- 134 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH--------------------------------------
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH--------------------------------------
Confidence 566666666 7777777777777777666542110
Q ss_pred hhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCch---hHHHHHHHhcc-------
Q 003433 620 NRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQV---YGVAHGLLMGY------- 689 (820)
Q Consensus 620 ~~~~~~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~---~~~~~~~~~~~------- 689 (820)
.++..+..+... -...+..++..|.+.|++++|...|+++++.+|++ ......+...+
T Consensus 135 --------~a~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~ 202 (261)
T 3qky_A 135 --------DATQKIRELRAK----LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQS 202 (261)
T ss_dssp --------HHHHHHHHHHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTS
T ss_pred --------HHHHHHHHHHHH----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccc
Confidence 011111111000 01125678888999999999999999999887763 23333333222
Q ss_pred ----ccchHHHHHHHHHHHhhcCCCcc--hhHHHHHHHHHhhcCchHHHH
Q 003433 690 ----RDNIWVQALSLFDEVKLMDSSTA--SAFYNALTDMLWHFGQKRGAQ 733 (820)
Q Consensus 690 ----~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 733 (820)
..|++++|+..++++++..|++. ...+..+..++.+.|+++++.
T Consensus 203 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 203 VRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred hhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 12889999999999999999653 234556666766666665544
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=1e-08 Score=105.16 Aligned_cols=97 Identities=7% Similarity=0.040 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----
Q 003433 265 TYNAVIDACGKG-GVDFKHVVEIFDDMLRNGVQP-D----RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDI---- 334 (820)
Q Consensus 265 ~~~~ll~~~~~~-g~~~~~A~~~~~~m~~~g~~p-~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~---- 334 (820)
+|+.+...|... | ++++|+..|++.++..... + ..++..+...+.+.|++++|+..|+++.+.......
T Consensus 119 ~~~~lg~~~~~~lg-~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 119 FKFELGEILENDLH-DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 444444455443 5 5555555555554321100 0 234555555555566666666666655554321111
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHchh
Q 003433 335 --FTYNTLLDAICKGAQMDLAFEIMAEMPA 362 (820)
Q Consensus 335 --~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 362 (820)
..|..+..++...|++++|+..|++..+
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1344555555566666666666665554
No 90
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.01 E-value=2.3e-07 Score=94.26 Aligned_cols=221 Identities=9% Similarity=0.015 Sum_probs=170.0
Q ss_pred CCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc-
Q 003433 169 RGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLG--KVDLAKNIFETALNEGYGNTVYAFSALISAY----GRS- 241 (820)
Q Consensus 169 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~- 241 (820)
....++|+++++.++..+ |....+++.-..++...| +++++++.++.++...+. +..+|+.-...+ .+.
T Consensus 46 ~e~s~~aL~~t~~~L~~n---P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 46 EEYSERALHITELGINEL---ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHC---cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 334468999999999885 666678888889999998 999999999999987654 677888777666 555
Q ss_pred --CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC---
Q 003433 242 --GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFK--HVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL--- 314 (820)
Q Consensus 242 --g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~--- 314 (820)
+++++++++++++.+...+ |-.+|+.-.-.+.+.+ .++ ++++.++++++..+. |...|+.-...+.+.+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~-~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFD-LHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCC
T ss_pred ccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc-ccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccch
Confidence 7889999999999886544 8888888777777777 777 899999999987655 77778777777777766
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHchhCC--CCCCHHHHHHHHHHHHHcCCHHHH
Q 003433 315 ---WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDL-AFEIMAEMPAKN--ISPNVVTYSTMIDGYAKAGRLDDA 388 (820)
Q Consensus 315 ---~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~-A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A 388 (820)
++++++.+++++... +.|...|+.+...+.+.|+... +..+.+++.+.+ -..+...+..+.++|.+.|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 888888888888765 4578888888888888877444 445666655432 122667777788888888888888
Q ss_pred HHHHHHHHH
Q 003433 389 LNMFSEMKF 397 (820)
Q Consensus 389 ~~~~~~m~~ 397 (820)
+++++.+.+
T Consensus 278 ~~~~~~l~~ 286 (306)
T 3dra_A 278 RTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888888775
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.01 E-value=7.1e-08 Score=96.94 Aligned_cols=143 Identities=8% Similarity=0.025 Sum_probs=63.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHch
Q 003433 283 VVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGI-DQDIFTYNTLLDAICKGAQMDLAFEIMAEMP 361 (820)
Q Consensus 283 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 361 (820)
|+..|++.+..+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444332 22333344444555555555555555555444331 1234444455555555555555555555554
Q ss_pred hCCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003433 362 AKNISP-----NVVTYSTMIDG--YAKAG--RLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEM 430 (820)
Q Consensus 362 ~~g~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~ 430 (820)
+. .| +..+...|+.+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 43 22 12333333333 12222 555555555555443 333222233333455555555555555543
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.00 E-value=1.2e-08 Score=98.70 Aligned_cols=172 Identities=12% Similarity=0.042 Sum_probs=103.2
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHH----------------HHHHHHhcCChHHHHHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASA----------------MISILGRLGKVDLAKNIFETA 219 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~ 219 (820)
.+.+......+.+.|++++|+..|+.++... |.+..++.. ++.+|.+.|++++|+..|+++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN---IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445556667888999999999999999875 334445555 677777777777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCCCC
Q 003433 220 LNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGG-VDFKHVVEIFDDMLRNGVQPD 298 (820)
Q Consensus 220 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~~A~~~~~~m~~~g~~p~ 298 (820)
++..+. +..+|..+..+|...|++++|+..|++..+..+. +..+|..+...+...| ...+.+...+..... ..|.
T Consensus 81 l~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 156 (208)
T 3urz_A 81 LQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKM 156 (208)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHH
T ss_pred HHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCch
Confidence 766433 6667777777777777777777777777664322 4556666666654433 022333444444321 1222
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 003433 299 RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFT 336 (820)
Q Consensus 299 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 336 (820)
...+..+..++...|++++|+..|++.++. .|+...
T Consensus 157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 157 QYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 223333344445556666666666666653 344433
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.99 E-value=1.2e-08 Score=102.87 Aligned_cols=216 Identities=12% Similarity=0.010 Sum_probs=143.4
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHH
Q 003433 153 LCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG--NTVYA 230 (820)
Q Consensus 153 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~ 230 (820)
..+++.+..+...+.+.|++++|++.|+.++...+..+....++..++.++.+.|++++|+..|+++++..+. ....+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3456677788888999999999999999999875433333567888999999999999999999999886432 23567
Q ss_pred HHHHHHHHHh--------cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003433 231 FSALISAYGR--------SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITF 302 (820)
Q Consensus 231 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~ 302 (820)
+..+..++.+ .|++++|+..|+++.+.... +...+..+ ..+..+... ....+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~---------------~~~~~~~~~----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDAT---------------QKIRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHH---------------HHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHH---------------HHHHHHHHH----HHHHH
Confidence 8888889988 99999999999999874322 22222111 111111100 01124
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHchhCCCCCC--
Q 003433 303 NSLLAVCSRGGLWEAARNLFNEMVHRGIDQ--DIFTYNTLLDAICKG----------AQMDLAFEIMAEMPAKNISPN-- 368 (820)
Q Consensus 303 ~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~ll~~~~~~----------g~~~~A~~~~~~m~~~g~~p~-- 368 (820)
..+...|.+.|++++|+..|+++++..... ....+..+..+|.+. |++++|+..|+++.+......
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 556677777788888888887777653211 234666677777655 777888888877776532211
Q ss_pred HHHHHHHHHHHHHcCCHHHH
Q 003433 369 VVTYSTMIDGYAKAGRLDDA 388 (820)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A 388 (820)
..+...+...+.+.++++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 23444555555555555544
No 94
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.99 E-value=6.6e-07 Score=98.42 Aligned_cols=241 Identities=10% Similarity=-0.001 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003433 315 WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGA--Q-----MDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDD 387 (820)
Q Consensus 315 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g--~-----~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 387 (820)
+..|..+++.+...--..+...|...+..-...+ - .+.+..+|++++... .-+...|...+..+.+.|+.++
T Consensus 153 y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ 231 (493)
T 2uy1_A 153 FQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEK 231 (493)
T ss_dssp HHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3344555544433100013445655555433221 1 244667888877653 2357778888888888899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---------C---CCCHHHHHHHHHHHHhcCCH
Q 003433 388 ALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSG---------I---RKDAVTYNALLGGYGKQGKY 455 (820)
Q Consensus 388 A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~---~~~~~~~~~li~~~~~~g~~ 455 (820)
|..+|++.... +.+...+. .|....+.++. ++.+.+.- . ......|...+..+.+.+..
T Consensus 232 ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~ 302 (493)
T 2uy1_A 232 AKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGL 302 (493)
T ss_dssp HHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCH
Confidence 99999988877 33333332 22222111111 22222110 0 01135577777777778889
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003433 456 DEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGG-LYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDE 534 (820)
Q Consensus 456 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 534 (820)
+.|..+|++. ... ..+...|...+..-...+ +.+.|..+|+...+.... +...|...++...+.|+.+.|..+|++
T Consensus 303 ~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er 379 (493)
T 2uy1_A 303 ELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKR 379 (493)
T ss_dssp HHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999998 321 224444443333222333 699999999999876432 466677788888899999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhh
Q 003433 535 MTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGK 573 (820)
Q Consensus 535 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~ 573 (820)
+.+ ....|...++--...|+.+.+..++++++..
T Consensus 380 ~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 380 LEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp SCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 732 4667888887767789998888888887753
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.97 E-value=1.2e-07 Score=95.25 Aligned_cols=184 Identities=10% Similarity=0.010 Sum_probs=97.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003433 388 ALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI-RKDAVTYNALLGGYGKQGKYDEVRRMFEQMK 466 (820)
Q Consensus 388 A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 466 (820)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..+- .-+...+..++..|.+.|+.+.|.+++++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 34444445555666666666666666666554431 1244555555666666666666666666665
Q ss_pred HCCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 467 ADCVSP-----NLLTYSTLIDVY--SKGG--LYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 467 ~~~~~p-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
+. .| +..+...|+.++ ...| ++.+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 53 34 233444444332 2222 6666666666665532 3322223333356666666666666665543
Q ss_pred C-----CC---CC-CHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhh
Q 003433 538 E-----GI---RP-NVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESA 578 (820)
Q Consensus 538 ~-----g~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~ 578 (820)
. .. .| |..++..+|......|+ +|.+++.++.+..|+.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 2 00 13 33355455554445554 56666666666666654
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.97 E-value=2.4e-08 Score=96.62 Aligned_cols=135 Identities=15% Similarity=0.056 Sum_probs=88.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003433 410 VLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGL 489 (820)
Q Consensus 410 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 489 (820)
+...|.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..|++.++.. +.+..+|..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 7777778888888888888777665 5567777788888888888888888888877753 3456777777777765543
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003433 490 --YKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSI 550 (820)
Q Consensus 490 --~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 550 (820)
...+...++.... ..|....+..+..++...|++++|+..|++.++ +.|+......+
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l 196 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHH
Confidence 3444555555432 122223344455666677888888888888876 46665544433
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.96 E-value=3.9e-08 Score=86.90 Aligned_cols=123 Identities=21% Similarity=0.279 Sum_probs=49.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003433 411 LSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLY 490 (820)
Q Consensus 411 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 490 (820)
...+...|++++|+.+++++.+.. +.+...+..+...+...|++++|..+|+++...+ +.+...+..+...|...|++
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcCH
Confidence 333333344444444443333322 2233333333444444444444444444433321 22233344444444444444
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 491 KEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (820)
Q Consensus 491 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (820)
++|.+.++++.+... .+...+..++..+.+.|++++|...|+++.
T Consensus 86 ~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 86 DEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 444444444443321 133444444444444444444444444444
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.96 E-value=3.6e-08 Score=87.09 Aligned_cols=130 Identities=21% Similarity=0.321 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003433 371 TYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYG 450 (820)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 450 (820)
.|..+...|...|++++|+.+|+++.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45666667777777777777777766553 3455666666777777777777777777766554 445666666777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003433 451 KQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQA 503 (820)
Q Consensus 451 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 503 (820)
+.|++++|..+++++.... +.+...+..++..|.+.|++++|...|+++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777766542 334566666777777777777777777776654
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.96 E-value=7.2e-09 Score=119.65 Aligned_cols=153 Identities=12% Similarity=-0.021 Sum_probs=76.1
Q ss_pred HcCCCHHHHHHHHHHHH--------HcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003433 167 GNRGEWSKAIQCFAFAV--------KREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 238 (820)
Q Consensus 167 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 238 (820)
...|++++|++.|++++ .. .+.+..++..++.++.+.|++++|+..|+++++.++ .+..+|..+..+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD---FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C---CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc---cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHH
Confidence 44555555555555555 22 123333455555555555555555555555555432 2455555555555
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 003433 239 GRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAA 318 (820)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 318 (820)
.+.|++++|++.|++..+.... +...|..+..++.+.| ++++ ++.|+++++.... +...|..+..++.+.|++++|
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g-~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAG-NTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHT-CCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcC-ChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555555543221 3444445555555555 4555 5555555543222 344445555555555555555
Q ss_pred HHHHHHHHH
Q 003433 319 RNLFNEMVH 327 (820)
Q Consensus 319 ~~~~~~~~~ 327 (820)
++.|+++++
T Consensus 554 ~~~~~~al~ 562 (681)
T 2pzi_A 554 VRTLDEVPP 562 (681)
T ss_dssp HHHHHTSCT
T ss_pred HHHHHhhcc
Confidence 555554444
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.94 E-value=2.5e-09 Score=97.42 Aligned_cols=118 Identities=7% Similarity=-0.014 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHH
Q 003433 624 QEILCILGVFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLF 701 (820)
Q Consensus 624 ~~~~~Al~~~~~m~~~~~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~ 701 (820)
+++++|++.|++... ..|+ ...+..++..|.+.|++++|++.|+++++.+|.+..+...+...+ ..|++++|+..|
T Consensus 11 ~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~ 88 (150)
T 4ga2_A 11 ADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECY 88 (150)
T ss_dssp HHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence 355556666655543 3332 333455666666666666666666666666666666555554444 456666666666
Q ss_pred HHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHH-HHHhhhhhh
Q 003433 702 DEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLV-VLEGKRRQV 744 (820)
Q Consensus 702 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~ 744 (820)
+++++++|++ ...|..++.+|.+.|++++|.+. ++++.+...
T Consensus 89 ~~al~~~p~~-~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P 131 (150)
T 4ga2_A 89 RRSVELNPTQ-KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP 131 (150)
T ss_dssp HHHHHHCTTC-HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred HHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence 6666666643 44566666666666666655443 355554433
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.91 E-value=9.3e-08 Score=92.69 Aligned_cols=162 Identities=9% Similarity=-0.036 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHCCCCCCHHHHH
Q 003433 333 DIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAG----RLDDALNMFSEMKFLGIGLDRVSYN 408 (820)
Q Consensus 333 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~~d~~~~~ 408 (820)
+...+..|...|...+++++|+++|++..+.| +...+..|...|.. + ++++|+++|++..+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34444444444444444444444444444432 33444444444443 3 4444444444444332 333444
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003433 409 TVLSIYAK----LGRFEEALLVCKEMESSGIR-KDAVTYNALLGGYGK----QGKYDEVRRMFEQMKADCVSPNLLTYST 479 (820)
Q Consensus 409 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 479 (820)
.|...|.. .+++++|+..|++..+.|.. .+...+..|...|.. .++.++|...|++..+. ..+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 44444433 44444444444444433310 013444444444444 44444455544444443 112233444
Q ss_pred HHHHHHhc-C-----CHHHHHHHHHHHHHC
Q 003433 480 LIDVYSKG-G-----LYKEAMQIFREFKQA 503 (820)
Q Consensus 480 li~~~~~~-g-----~~~~A~~~~~~m~~~ 503 (820)
|..+|... | ++++|...|++..+.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 44444332 1 444555444444443
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.90 E-value=2.2e-08 Score=115.58 Aligned_cols=177 Identities=12% Similarity=-0.012 Sum_probs=147.1
Q ss_pred HHcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003433 380 AKAGRLDDALNMFSEMK--------FLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK 451 (820)
Q Consensus 380 ~~~g~~~~A~~~~~~m~--------~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 451 (820)
...|++++|++.+++.. +.. +.+...+..+...|.+.|++++|+..|+++.+.. +.+...|..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77899999999999998 442 4466788889999999999999999999998765 5678899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003433 452 QGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSL 531 (820)
Q Consensus 452 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 531 (820)
.|++++|+..|++.++.. +.+...|..+..+|.+.|++++ ++.|++.++.+.. +...|..+..+|.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998863 4467889999999999999999 9999999987654 788999999999999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHhhcCchhhh
Q 003433 532 LDEMTKEGIRPNV-VTYNSIIDAFGRSATTECT 563 (820)
Q Consensus 532 ~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a 563 (820)
|+++++ +.|+. ..+..+..++...++.+++
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~~~~~~~~ 587 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLSGRSTSEV 587 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC-------C
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHccCCCCCC
Confidence 999987 46765 4777888888776654433
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.88 E-value=1.5e-07 Score=91.28 Aligned_cols=176 Identities=10% Similarity=0.006 Sum_probs=127.1
Q ss_pred HHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHH
Q 003433 352 LAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLG----RFEEALLVC 427 (820)
Q Consensus 352 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g----~~~~A~~~~ 427 (820)
+|++.|++..+.| +...+..|...|...+++++|+++|++..+.| +...+..|...|.. + ++++|+..|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4667777777664 77778888888888888888888888887765 56667777777776 6 788888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 003433 428 KEMESSGIRKDAVTYNALLGGYGK----QGKYDEVRRMFEQMKADCVS-PNLLTYSTLIDVYSK----GGLYKEAMQIFR 498 (820)
Q Consensus 428 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~ 498 (820)
++..+.| +...+..|...|.. .+++++|+..|++..+.+.. .+...+..|..+|.. .+++++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8877644 56677777777776 77888888888887776411 016677777777777 677888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHCC
Q 003433 499 EFKQAGLKADVVLYSALIDALCKN-G-----LVESAVSLLDEMTKEG 539 (820)
Q Consensus 499 ~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g 539 (820)
+..+.+ .+...+..|...|... | +.++|+..|++..+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 887751 2445666677777653 3 7788888888877765
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.88 E-value=1e-07 Score=93.38 Aligned_cols=189 Identities=14% Similarity=0.063 Sum_probs=130.5
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHH
Q 003433 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT--VYAFS 232 (820)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~ 232 (820)
+++.+..+...+.+.|++++|+..|+.++...+..+....++..++.++.+.|++++|+..|+++++..+... ..++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3556667788899999999999999999987544443345778899999999999999999999988754322 13555
Q ss_pred HHHHHHHh------------------cCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Q 003433 233 ALISAYGR------------------SGYCQEAISVFNSMKRYNLKPNL-VTYNAVIDACGKGGVDFKHVVEIFDDMLRN 293 (820)
Q Consensus 233 ~li~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~ 293 (820)
.+..++.+ .|++++|+..|+++.+.. |+. ..+....... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~-----------~~~~~~--- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV-----------FLKDRL--- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH-----------HHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH-----------HHHHHH---
Confidence 56666654 456777777777777643 322 1221111000 000000
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCC
Q 003433 294 GVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQD---IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNI 365 (820)
Q Consensus 294 g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 365 (820)
......+...|.+.|++++|+..|+++++... .+ ...+..+..+|.+.|+.++|++.++.+...+.
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYP-DTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCc-CCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01123466778899999999999999988632 12 25688899999999999999999998887643
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.87 E-value=9.2e-09 Score=93.57 Aligned_cols=145 Identities=10% Similarity=-0.037 Sum_probs=95.5
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003433 163 LRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSG 242 (820)
Q Consensus 163 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 242 (820)
...+...|++++|++.|..+.... +.....+..++.+|.+.|++++|++.|+++++..+. +..+|..+..+|.+.|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~---p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP---RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH---HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhcccC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 334555677788888877776653 333345566777888888888888888888776433 6777888888888888
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 003433 243 YCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEI-FDDMLRNGVQPDRITFNSLLAVCSRGGL 314 (820)
Q Consensus 243 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~-~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 314 (820)
++++|+..|++..+.... +...|..+...+.+.| ++++|.+. ++++++..+. +..+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~-~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPT-QKDLVLKIAELLCKND-VTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHC-SSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 888888888877764322 5667777777777777 66555443 4666664332 55566665555555553
No 106
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.87 E-value=7.8e-07 Score=90.40 Aligned_cols=218 Identities=11% Similarity=0.052 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CCH
Q 003433 280 FKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGG--LWEAARNLFNEMVHRGIDQDIFTYNTLLDAI----CKG---AQM 350 (820)
Q Consensus 280 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~----~~~---g~~ 350 (820)
.++|++++++++..... +...|+.-..++...| +++++++.++.++... +-+..+|+.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 35566666666654322 3444555555555555 6666666666666543 22344454444444 333 556
Q ss_pred HHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC------HHH
Q 003433 351 DLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLD--DALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGR------FEE 422 (820)
Q Consensus 351 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~------~~~ 422 (820)
++++++++++.+...+ +..+|+.-...+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.++ +++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 6666666666655433 5566666666666666665 6666666666554 3455555555544444444 566
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003433 423 ALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDE-VRRMFEQMKADC--VSPNLLTYSTLIDVYSKGGLYKEAMQIFRE 499 (820)
Q Consensus 423 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 499 (820)
+++.+++++... +-|...|+.+...+.+.|+..+ +..+..++.+.+ -..+...+..++.+|.+.|+.++|.++++.
T Consensus 205 El~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 666666665554 4566666666666666655333 333444433221 123455555666666666666666666666
Q ss_pred HHH
Q 003433 500 FKQ 502 (820)
Q Consensus 500 m~~ 502 (820)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.85 E-value=2.4e-08 Score=93.66 Aligned_cols=61 Identities=20% Similarity=0.206 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003433 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE 222 (820)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 222 (820)
+......+.+.|++++|+..|+++++.. |.+..++..++.++.+.|++++|+..|+++...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 69 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL---QSRGDVKLAKADCLLETKQFELAQELLATIPLE 69 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH---HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc
Confidence 3444555555666666666666555543 233345555566666666666666666555543
No 108
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.84 E-value=4.1e-06 Score=92.11 Aligned_cols=345 Identities=9% Similarity=-0.025 Sum_probs=216.6
Q ss_pred CCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCC-hHHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHH----hcC
Q 003433 170 GEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGK-VDLAKNIFETALNE-GY-GNTVYAFSALISAYG----RSG 242 (820)
Q Consensus 170 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~-~~-~~~~~~~~~li~~~~----~~g 242 (820)
++++.+..+|++++..- | +..+|...+....+.+. .+....+|+.++.. |. ..+...|...+..+. ..|
T Consensus 28 ~~~e~~~~iferal~~~---p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~ 103 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKS---Y-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQT 103 (493)
T ss_dssp TCHHHHHHHHHHHSTTC---C-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHH
T ss_pred CCHHHHHHHHHHHhccC---C-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhH
Confidence 77888999998888752 2 44577777776666663 45677788887763 32 236678887777654 346
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-------------CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 243 YCQEAISVFNSMKRYNLKPNLVTYNAVIDACGK-------------GGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVC 309 (820)
Q Consensus 243 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-------------~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 309 (820)
+.+.+..+|++.+......-...|......-.. .+ .+..|..+++++...-...+...|...+..-
T Consensus 104 ~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~-~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E 182 (493)
T 2uy1_A 104 RIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLP-IFQSSFQRYQQIQPLIRGWSVKNAARLIDLE 182 (493)
T ss_dssp HHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhH-HHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 778888899888874221112222222211100 01 2334444444443210001333555544443
Q ss_pred HhC--CC-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHc
Q 003433 310 SRG--GL-----WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKA 382 (820)
Q Consensus 310 ~~~--g~-----~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 382 (820)
... |- .+.+..+|++++... +.+...|...+..+.+.|+.+.|..+|++.... +.+...|. .|...
T Consensus 183 ~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~ 255 (493)
T 2uy1_A 183 MENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLV 255 (493)
T ss_dssp HTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHH
T ss_pred hcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhh
Confidence 222 11 345778999988753 556888998999999999999999999999887 22333332 23322
Q ss_pred CCHHHHHHHHHHHHHCC---------C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003433 383 GRLDDALNMFSEMKFLG---------I---GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYG 450 (820)
Q Consensus 383 g~~~~A~~~~~~m~~~~---------~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 450 (820)
.+.++. ++.+.+.- . ......|...+..+.+.+..+.|..+|++. +.. ..+...|...+..-.
T Consensus 256 ~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 256 MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY 330 (493)
T ss_dssp TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH
T ss_pred cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH
Confidence 222222 22222210 0 011245666777777788999999999999 322 234555554333333
Q ss_pred hcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003433 451 KQG-KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAV 529 (820)
Q Consensus 451 ~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 529 (820)
..+ +.+.|..+|+...+.. +-+...+...++...+.|+.+.|..+|+.+. .....|...+..-...|+.+.+.
T Consensus 331 ~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHH
Confidence 333 6999999999988753 3345566777888888999999999999972 26788999998888899999999
Q ss_pred HHHHHHHH
Q 003433 530 SLLDEMTK 537 (820)
Q Consensus 530 ~~~~~m~~ 537 (820)
++++++..
T Consensus 405 ~v~~~~~~ 412 (493)
T 2uy1_A 405 ELVDQKMD 412 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998874
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.82 E-value=7.5e-08 Score=98.31 Aligned_cols=166 Identities=10% Similarity=0.019 Sum_probs=122.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003433 401 GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTL 480 (820)
Q Consensus 401 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 480 (820)
+.+...+..+...+.+.|++++|+..|+++.+.. +.+...+..+...|.+.|++++|...++++... .|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3344566677777888888888888888887665 556777888888888888888888888887664 3454433322
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhh
Q 003433 481 -IDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN---VVTYNSIIDAFGR 556 (820)
Q Consensus 481 -i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~ 556 (820)
...+...++.++|...|++..+..+. +...+..+...|...|++++|+..|+++++. .|+ ...+..++..+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHH
Confidence 33355667777788888888776643 6778888888888888888888888888874 333 4578888888888
Q ss_pred cCchhhhHHhHHHHhh
Q 003433 557 SATTECTVDDVERDLG 572 (820)
Q Consensus 557 ~g~~~~a~~~~~~~l~ 572 (820)
.|+.++|+..+++++.
T Consensus 268 ~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 268 LGTGDALASXYRRQLY 283 (287)
T ss_dssp HCTTCHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHH
Confidence 8888888887776654
No 110
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.81 E-value=2.9e-08 Score=89.89 Aligned_cols=103 Identities=12% Similarity=0.020 Sum_probs=92.0
Q ss_pred CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHH
Q 003433 641 IKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNA 718 (820)
Q Consensus 641 ~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 718 (820)
+.|+ ...+..++..+.+.|++++|...|++++..+|.+...+.++...+ ..|++++|+..|+++++++|++ +..|..
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~-~~~~~~ 109 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND-YTPVFH 109 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC-CHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC-cHHHHH
Confidence 6675 446889999999999999999999999999999999888877666 6899999999999999999965 667999
Q ss_pred HHHHHhhcCchHHHHHHHHHhhhhhh
Q 003433 719 LTDMLWHFGQKRGAQLVVLEGKRRQV 744 (820)
Q Consensus 719 l~~~~~~~g~~~~A~~~~~~~~~~~~ 744 (820)
++.+|.+.|++++|...++++.+...
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999887654
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.81 E-value=4e-08 Score=92.11 Aligned_cols=158 Identities=12% Similarity=0.093 Sum_probs=82.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcC
Q 003433 410 VLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDV-YSKGG 488 (820)
Q Consensus 410 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g 488 (820)
+...+.+.|++++|+..|++..+.. +.+...+..+...|.+.|++++|...|+++... .|+...+..+... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhhc
Confidence 3444555555555555555543332 334455555555555555555555555554433 1233222221111 11111
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCchhhhHHhH
Q 003433 489 LYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRP-NVVTYNSIIDAFGRSATTECTVDDV 567 (820)
Q Consensus 489 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 567 (820)
...+|...|++.++..+. +...+..+...+...|++++|+..|+++++....+ +...+..+..++...|+.++|+..+
T Consensus 89 ~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 222356666666655432 56666666666677777777777777666642221 2346666666666677777666666
Q ss_pred HHHh
Q 003433 568 ERDL 571 (820)
Q Consensus 568 ~~~l 571 (820)
++++
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.80 E-value=2.3e-08 Score=87.77 Aligned_cols=104 Identities=14% Similarity=-0.042 Sum_probs=92.2
Q ss_pred CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHH
Q 003433 641 IKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNA 718 (820)
Q Consensus 641 ~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 718 (820)
++|+ ...+...++.|.+.|++++|++.|+++++.+|.+..+..++...+ ..|++++|+..++++++++|++ ...|..
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-IKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-hHHHHH
Confidence 6776 456889999999999999999999999999999988877776655 6899999999999999999965 667999
Q ss_pred HHHHHhhcCchHHHHHHHHHhhhhhhh
Q 003433 719 LTDMLWHFGQKRGAQLVVLEGKRRQVW 745 (820)
Q Consensus 719 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 745 (820)
+|.+|...|++++|.+.++++.+....
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~ 113 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPS 113 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcC
Confidence 999999999999999999999877543
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.79 E-value=2.4e-07 Score=90.79 Aligned_cols=204 Identities=9% Similarity=-0.030 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCH--HHHHH
Q 003433 299 RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQ--DIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNV--VTYST 374 (820)
Q Consensus 299 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ 374 (820)
...+..+...+.+.|++++|+..|+++++..... ....+..+..+|.+.|++++|+..|+++.+....... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3445555666677777777777777776643111 1345666677777777777777777776665322111 13333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003433 375 MIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGK 454 (820)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 454 (820)
+..++.+.|.. .+ ..|..+...+...|++++|+..|+++++.. +.+...+.+.....
T Consensus 84 ~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----- 140 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----- 140 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH-----
T ss_pred HHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH-----
Confidence 44444332210 00 011222333344667777777777777653 22333332211100
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q 003433 455 YDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD--VVLYSALIDALCKNGLVESAVSLL 532 (820)
Q Consensus 455 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~ 532 (820)
.+...+. .....+...|.+.|++++|+..|+++++..+... ...+..+..+|.+.|+.++|++.+
T Consensus 141 -----~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 141 -----FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp -----HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 0001100 1123456778888888888888888887643211 246777888888888888888888
Q ss_pred HHHHHC
Q 003433 533 DEMTKE 538 (820)
Q Consensus 533 ~~m~~~ 538 (820)
+.+...
T Consensus 208 ~~l~~~ 213 (225)
T 2yhc_A 208 KIIAAN 213 (225)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 888775
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.79 E-value=1.5e-07 Score=96.00 Aligned_cols=164 Identities=10% Similarity=-0.012 Sum_probs=120.0
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHH-HH
Q 003433 298 DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYST-MI 376 (820)
Q Consensus 298 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li 376 (820)
+...+..+...+...|++++|+..|+++++.. +.+...+..+...|.+.|++++|+..|+++.... |+...... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 45566677777888888888888888888764 3457778888888888888888888888887653 44433322 23
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCC
Q 003433 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKD--AVTYNALLGGYGKQGK 454 (820)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~ 454 (820)
..+.+.++.++|+..|++..... +.+...+..+...|...|++++|+..|+++++.. +.+ ...+..++..|...|+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCC
Confidence 33566777777888888877764 5567778888888888888888888888887654 222 5677778888888888
Q ss_pred HHHHHHHHHHHH
Q 003433 455 YDEVRRMFEQMK 466 (820)
Q Consensus 455 ~~~A~~~~~~m~ 466 (820)
.++|...|++.+
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 888887777654
No 115
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.79 E-value=3.4e-06 Score=86.54 Aligned_cols=223 Identities=11% Similarity=0.075 Sum_probs=154.5
Q ss_pred HHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-
Q 003433 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLG-KVDLAKNIFETALNEGYGNTVYAFSALISAYGRS-G- 242 (820)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g- 242 (820)
+...+..++|+++++.++..+ |.+..+++.-..++...| .+++++++++.++...+. +..+|+.-..++.+. +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n---P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN---PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCS
T ss_pred HHhCCCCHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCC
Confidence 344455678999999999885 566678888888888888 599999999999987654 888999988888877 7
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 003433 243 YCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFK--------HVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL 314 (820)
Q Consensus 243 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~--------~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 314 (820)
++++++++++++.+...+ |..+|+.-.-.+.+.+ .++ ++++.++++++..+. |...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~-~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFS-TLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp CCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHH-HTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTT
T ss_pred ChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc-cccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccc
Confidence 899999999999986554 7888877665555544 444 888888888887555 77778877777777765
Q ss_pred -------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHchhCC---
Q 003433 315 -------WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQM--------------------DLAFEIMAEMPAKN--- 364 (820)
Q Consensus 315 -------~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~--------------------~~A~~~~~~m~~~g--- 364 (820)
++++++.+++++... +.|...|+-+-..+.+.|+. ....+...++...+
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE 295 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred cccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence 678888888877764 45677787777777666653 22222222232221
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 365 --ISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK 396 (820)
Q Consensus 365 --~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 396 (820)
-.++...+..|++.|...|+.++|.++++.+.
T Consensus 296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 296 DTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp SCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 01344555555556655566566666655554
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.77 E-value=9.8e-08 Score=98.60 Aligned_cols=157 Identities=11% Similarity=0.028 Sum_probs=96.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC--CHHHHHHHH
Q 003433 378 GYAKAGRLDDALNMFSEMKFL----GIGL-DRVSYNTVLSIYAKLGRFEEALLVCKEMESS----GIRK--DAVTYNALL 446 (820)
Q Consensus 378 ~~~~~g~~~~A~~~~~~m~~~----~~~~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~--~~~~~~~li 446 (820)
.|...|++++|...|.+..+. +-.. -..+|+.+...|.+.|++++|+..|++.++. | .+ -..+++.+.
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg 123 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAG 123 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 444555555555555544332 1000 0234555666666666666666666655332 1 11 134566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHH
Q 003433 447 GGYGKQGKYDEVRRMFEQMKADCVSP-N----LLTYSTLIDVYSKGGLYKEAMQIFREFKQA----GLKAD-VVLYSALI 516 (820)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~m~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li 516 (820)
.+|.+ |++++|+..|++.++..... + ..+++.+...|.+.|++++|+..|++.++. +..+. ...+..++
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 77777 88888888887765431000 1 356777888888888888888888887653 11111 23566677
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 003433 517 DALCKNGLVESAVSLLDEMT 536 (820)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~ 536 (820)
..+...|++++|+..|++.+
T Consensus 203 ~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 77788899999999999887
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.75 E-value=2.1e-07 Score=105.41 Aligned_cols=155 Identities=8% Similarity=-0.021 Sum_probs=108.1
Q ss_pred cCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003433 347 GAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLV 426 (820)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~ 426 (820)
.|++++|++.|++..+.... +...|..+...|.+.|++++|++.|++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 46788888888888765432 56778888888888888888888888888764 44677788888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 003433 427 CKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKG---GLYKEAMQIFREFKQA 503 (820)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 503 (820)
|++..+.. +.+...+..+..+|.+.|++++|.+.|++..+.. +.+...+..+...|... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 88887765 5567788888888888888888888888887753 34567778888888888 8888888888888876
Q ss_pred CC
Q 003433 504 GL 505 (820)
Q Consensus 504 ~~ 505 (820)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 118
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.75 E-value=1.7e-07 Score=106.16 Aligned_cols=154 Identities=10% Similarity=-0.082 Sum_probs=120.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003433 312 GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNM 391 (820)
Q Consensus 312 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 391 (820)
.|++++|++.|+++.+.. +.+...+..+...|.+.|++++|++.|++..+.... +...|..+...|...|++++|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999998764 346888999999999999999999999999887533 678899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 003433 392 FSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQ---GKYDEVRRMFEQMKAD 468 (820)
Q Consensus 392 ~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 468 (820)
|++..+.. +.+...+..+...|.+.|++++|++.|++..+.. +.+...+..+...+... |+.++|.+.+++.++.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998875 5567889999999999999999999999998765 56788899999999999 9999999999998876
Q ss_pred C
Q 003433 469 C 469 (820)
Q Consensus 469 ~ 469 (820)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 119
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.75 E-value=1.7e-07 Score=96.78 Aligned_cols=120 Identities=9% Similarity=-0.041 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHchhC----CCCCC-HH
Q 003433 301 TFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQ-----DIFTYNTLLDAICKGAQMDLAFEIMAEMPAK----NISPN-VV 370 (820)
Q Consensus 301 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~-----~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~ 370 (820)
++..+..+|.. |++++|+..|++.++..... ...+++.+...|.+.|++++|+..|++.... +..+. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 44445555555 55655555555554321000 1345556666666666666666666665542 11111 12
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHcCCHHHHHH
Q 003433 371 TYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD------RVSYNTVLSIYAKLGRFEEALL 425 (820)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d------~~~~~~li~~~~~~g~~~~A~~ 425 (820)
.+..++.++...|++++|+..|++.. . .|+ ......++.++ ..|+.+.+..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 45555556666677777777776665 3 221 12233444444 4566655555
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.73 E-value=3.4e-07 Score=93.04 Aligned_cols=102 Identities=13% Similarity=-0.001 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 003433 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRP-NVVTYNSII 551 (820)
Q Consensus 473 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll 551 (820)
+...+..+...+.+.|++++|+..|++.++.... +...|..+..+|.+.|++++|+..++++++. .| +...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 4556677777777888888888888887776533 6777778888888888888888888888764 33 455777778
Q ss_pred HHHhhcCchhhhHHhHHHHhhhhhhh
Q 003433 552 DAFGRSATTECTVDDVERDLGKQKES 577 (820)
Q Consensus 552 ~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (820)
.++...|++++|+..++++++..|+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 88888888888888888887776654
No 121
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.69 E-value=9e-06 Score=83.05 Aligned_cols=135 Identities=9% Similarity=0.058 Sum_probs=68.6
Q ss_pred HcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 416 KLGRF-EEALLVCKEMESSGIRKDAVTYNALLGGYGKQGK----------YDEVRRMFEQMKADCVSPNLLTYSTLIDVY 484 (820)
Q Consensus 416 ~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 484 (820)
+.|.+ ++|+.+++.++... +.+..+|+.--..+...+. +++++.+++.++... +-+..+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34443 36677777666554 4445555554444333332 445555555555432 33455555555555
Q ss_pred HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 485 SKGG--LYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGL-VESAVSLLDEMTKEGIRPNVVTYNSIIDAF 554 (820)
Q Consensus 485 ~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 554 (820)
.+.| .+++++.+++.+.+..++ |...|+.-...+...|. ++++++.++++++..+. |...|+.....+
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll 189 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLL 189 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 5554 255555555555555443 55555555555555555 35555555555554322 444554444433
No 122
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.67 E-value=5.1e-08 Score=88.33 Aligned_cols=110 Identities=14% Similarity=0.136 Sum_probs=94.3
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCC
Q 003433 632 VFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDS 709 (820)
Q Consensus 632 ~~~~m~~~~~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~ 709 (820)
.|++++. +.|+ ...+..++..+...|++++|...|++++..+|.+..++.++...+ ..|++++|+..|+++++++|
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4566554 5664 456788999999999999999999999999999888877776555 68999999999999999999
Q ss_pred CcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhh
Q 003433 710 STASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQV 744 (820)
Q Consensus 710 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 744 (820)
++ +..+..++.+|...|++++|.+.++++.+...
T Consensus 87 ~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 87 XE-PRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp TC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred CC-chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 65 66789999999999999999999998877654
No 123
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.66 E-value=1.2e-05 Score=82.53 Aligned_cols=170 Identities=12% Similarity=0.065 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-CHHHHHHH
Q 003433 280 FKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGG-LWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKG-A-QMDLAFEI 356 (820)
Q Consensus 280 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~-g-~~~~A~~~ 356 (820)
.++|++++++++..... +..+|+.-..++...| .+++++.+++.++... +-+..+|+.-...+.+. + ++++++++
T Consensus 70 se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 70 SERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 34555555555554322 3334444444444445 3566666666665543 23455555555555554 4 55666666
Q ss_pred HHHchhCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-------HH
Q 003433 357 MAEMPAKNISPNVVTYSTMIDGYAKAGRLD--------DALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGR-------FE 421 (820)
Q Consensus 357 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~-------~~ 421 (820)
++++.+...+ |..+|+.-...+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.++ ++
T Consensus 148 ~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 148 IHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHH
Confidence 6666655433 5555555544444444444 6666666666554 4455566655555555554 56
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003433 422 EALLVCKEMESSGIRKDAVTYNALLGGYGKQGK 454 (820)
Q Consensus 422 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 454 (820)
++++.+++++... +-|...|+.+-..+.+.|+
T Consensus 226 eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 226 DELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 6666666666554 4566666665555555544
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.62 E-value=7.8e-07 Score=77.80 Aligned_cols=108 Identities=15% Similarity=0.121 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (820)
+.+......|.+.|++++|++.|+++++.+ |.+..++..++.+|.+.|++++|+..|+++++.++. +..+|..+..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~ 89 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD---PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHH
Confidence 456667888888999999999999888874 455668888888899999999999999988887543 6788888888
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 003433 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAV 269 (820)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 269 (820)
+|...|++++|++.|++..+..+. +...+..+
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l 121 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVDPS-NEEAREGV 121 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHH
Confidence 899999999999999888874322 34444433
No 125
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.61 E-value=4.9e-06 Score=85.08 Aligned_cols=91 Identities=18% Similarity=0.078 Sum_probs=41.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 003433 376 IDGYAKAGRLDDALNMFSEMKFLGI-GLDR----VSYNTVLSIYAKLGRFEEALLVCKEMESSGIR-KD----AVTYNAL 445 (820)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~m~~~~~-~~d~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l 445 (820)
+..+...|++++|..++++..+... .++. ..+..+...+...|++++|+..|+++.+.... .+ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4455566666666666666554311 1111 11223444444445555555555555442111 11 1234455
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 003433 446 LGGYGKQGKYDEVRRMFEQMK 466 (820)
Q Consensus 446 i~~~~~~g~~~~A~~~~~~m~ 466 (820)
...|...|++++|...|++++
T Consensus 162 g~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555544
No 126
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.61 E-value=1e-07 Score=99.77 Aligned_cols=117 Identities=10% Similarity=-0.053 Sum_probs=99.9
Q ss_pred hhhHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHH
Q 003433 623 RQEILCILGVFQKMHKLKIKPN----------------VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLL 686 (820)
Q Consensus 623 ~~~~~~Al~~~~~m~~~~~~Pd----------------~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~ 686 (820)
.+++++|+..|++.+. +.|+ ..+|..++.+|.+.|++++|+..|+++++.+|.+..++..+.
T Consensus 160 ~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg 237 (336)
T 1p5q_A 160 EGKYKQALLQYKKIVS--WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRG 237 (336)
T ss_dssp HTCHHHHHHHHHHHHH--HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--HhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3588899999999987 4454 478999999999999999999999999999999888877776
Q ss_pred hcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHH-HHHHHHhhhh
Q 003433 687 MGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGA-QLVVLEGKRR 742 (820)
Q Consensus 687 ~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 742 (820)
..+ ..|++++|+..|+++++++|.+ ...+..++.++.+.|++++| ..+++.+..+
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 238 EAHLAVNDFELARADFQKVLQLYPNN-KAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655 6889999999999999999965 67799999999999999999 4456665443
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.59 E-value=3.1e-06 Score=81.72 Aligned_cols=127 Identities=11% Similarity=0.039 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003433 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYA 415 (820)
Q Consensus 336 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~ 415 (820)
.+..+...+.+.|++++|++.|++.. .++...|..+...|.+.|++++|++.|++..+.. +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34456666677777777777777664 3466677777777777777777777777776654 445666777777777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003433 416 KLGRFEEALLVCKEMESSGIRKD----------------AVTYNALLGGYGKQGKYDEVRRMFEQMKAD 468 (820)
Q Consensus 416 ~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 468 (820)
..|++++|+..|++..+.. +.+ ...+..+..+|.+.|++++|...|++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 7777777777777776543 222 256666667777777777777777776664
No 128
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.58 E-value=9.3e-06 Score=82.98 Aligned_cols=160 Identities=9% Similarity=0.053 Sum_probs=82.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC-CC----HHHHHHH
Q 003433 306 LAVCSRGGLWEAARNLFNEMVHRGI-DQD----IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNIS-PN----VVTYSTM 375 (820)
Q Consensus 306 l~~~~~~g~~~~A~~~~~~~~~~g~-~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~l 375 (820)
+..+...|++++|..++++..+... .++ ...+..+...+...|++++|+..|++....... .+ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4556677777777777777766421 111 112334555555566667777776666553211 12 2246666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHH
Q 003433 376 IDGYAKAGRLDDALNMFSEMKFL-----GIGLD-RVSYNTVLSIYAKLGRFEEALLVCKEMESS----GIRKD-AVTYNA 444 (820)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~m~~~-----~~~~d-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~ 444 (820)
...|...|++++|+..|+++.+. +..+. ..++..+...|.+.|++++|+..+++.++. +.... ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 66666666666666666665521 10111 124455555566666666666555554321 11111 344555
Q ss_pred HHHHHHhcC-CHHHHHHHHHHH
Q 003433 445 LLGGYGKQG-KYDEVRRMFEQM 465 (820)
Q Consensus 445 li~~~~~~g-~~~~A~~~~~~m 465 (820)
+..+|.+.| .+++|.+.|++.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHH
Confidence 555555555 245555555544
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.57 E-value=7.8e-06 Score=83.53 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH---HCCCC-C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-H
Q 003433 476 TYSTLIDVYSKGGLYKEAMQIFREFK---QAGLK-A--DVVLYSALIDALCKNGLVESAVSLLDEMTKE----GIRPN-V 544 (820)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~-p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~ 544 (820)
+++.+...|...|++++|...|++.. +.... + ...+|..++..|.+.|++++|+..+++.++. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 44444445555555555555554443 11100 0 0134445555555555555555555554431 11111 3
Q ss_pred HHHHHHHHHHhhcCchhhh-HHhHHHHhhh
Q 003433 545 VTYNSIIDAFGRSATTECT-VDDVERDLGK 573 (820)
Q Consensus 545 ~~~~~ll~~~~~~g~~~~a-~~~~~~~l~~ 573 (820)
.+|..+..+|.+.|+.++| ...+++++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 3455555555555555555 4445555544
No 130
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.56 E-value=3.3e-06 Score=81.57 Aligned_cols=126 Identities=17% Similarity=0.061 Sum_probs=67.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003433 372 YSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK 451 (820)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 451 (820)
+..+...+...|++++|+..|++.. .++...+..+...|.+.|++++|+..|++..+.. +.+...|..+..+|.+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3444555556666666666665542 3455555556666666666666666665555443 3445555555555566
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003433 452 QGKYDEVRRMFEQMKADCVSPN----------------LLTYSTLIDVYSKGGLYKEAMQIFREFKQA 503 (820)
Q Consensus 452 ~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 503 (820)
.|++++|...|++..+.. +.+ ...+..+..+|.+.|++++|...|++..+.
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666665555432 111 134444555555555555555555555443
No 131
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.56 E-value=2e-07 Score=83.70 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=91.4
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCC
Q 003433 632 VFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDS 709 (820)
Q Consensus 632 ~~~~m~~~~~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~ 709 (820)
.|++++. +.|+ ...+..++..+.+.|++++|...|++++..+|.+..++..+...+ ..|++++|+..|+++++++|
T Consensus 6 ~l~~al~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 6 TLAMLRG--LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp ---CCTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHc--CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4444443 5564 445778889999999999999999999999999888877766555 68999999999999999999
Q ss_pred CcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhh
Q 003433 710 STASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQV 744 (820)
Q Consensus 710 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 744 (820)
.+ +..+..++.+|...|++++|.+.++.+.+...
T Consensus 84 ~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 84 NE-PRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp TC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 65 66789999999999999999999998877654
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.55 E-value=2.7e-06 Score=78.18 Aligned_cols=93 Identities=13% Similarity=0.075 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003433 408 NTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKG 487 (820)
Q Consensus 408 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 487 (820)
..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...|++..+.. +.+...+..+..+|...
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh
Confidence 333444444444444444444443332 2234444444444444444444444444444331 22333444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 003433 488 GLYKEAMQIFREFKQ 502 (820)
Q Consensus 488 g~~~~A~~~~~~m~~ 502 (820)
|++++|...|+++.+
T Consensus 95 ~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 95 GKFRAALRDYETVVK 109 (166)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 444444444444444
No 133
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.55 E-value=3.2e-05 Score=78.95 Aligned_cols=177 Identities=8% Similarity=0.038 Sum_probs=127.5
Q ss_pred HHHHHcCCCHH-HHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHH
Q 003433 163 LRELGNRGEWS-KAIQCFAFAVKREERKNDQGKLASAMISILGRLGK----------VDLAKNIFETALNEGYGNTVYAF 231 (820)
Q Consensus 163 ~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~ 231 (820)
+....+.|.+. +|+++++.++..+ |.+..+++.-..++...+. +++++.+++.++...+. +..+|
T Consensus 36 ~~~~~~~~e~s~eaL~~t~~~L~~n---P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW 111 (331)
T 3dss_A 36 VFQKRQAGELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTW 111 (331)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHH
Confidence 33444566665 7999999999885 5555677666555555544 67888999999887544 88899
Q ss_pred HHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 232 SALISAYGRSGY--CQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVD-FKHVVEIFDDMLRNGVQPDRITFNSLLAV 308 (820)
Q Consensus 232 ~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 308 (820)
+.-..++.+.|+ +++++++++++.+...+ |..+|+.-.-.+...| . ++++++.++++++..+. |...|+.....
T Consensus 112 ~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~-~~~~eel~~~~~~I~~~p~-N~SAW~~R~~l 188 (331)
T 3dss_A 112 HHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAA-VAPAEELAFTDSLITRNFS-NYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhC-cCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 988888888884 88999999999886654 8888888777777777 5 68899999999887655 77777766665
Q ss_pred HHhC--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003433 309 CSRG--------------GLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKG 347 (820)
Q Consensus 309 ~~~~--------------g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 347 (820)
+.+. +.++++++.+...+... +-|...|+-+-..+.+.
T Consensus 189 l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 189 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSS
T ss_pred HHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 5544 34677777777777654 44666666554444443
No 134
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.54 E-value=2.4e-07 Score=81.27 Aligned_cols=99 Identities=9% Similarity=0.042 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcc------hhHHH
Q 003433 645 VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTA------SAFYN 717 (820)
Q Consensus 645 ~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~------~~~~~ 717 (820)
..++..|++.|.+.|++++|++.|+++++.+|.+..+..++...+ ..|++++|+..++++++++|+.. ...|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 445778999999999999999999999999999888877776665 68999999999999999887542 23578
Q ss_pred HHHHHHhhcCchHHHHHHHHHhhhhh
Q 003433 718 ALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (820)
Q Consensus 718 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (820)
.+|.+|...|++++|++.+++++...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 89999999999999999999887543
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.54 E-value=1.8e-06 Score=85.60 Aligned_cols=189 Identities=7% Similarity=-0.053 Sum_probs=123.2
Q ss_pred cCCCHHHHHHHHHHHHHcccccCChhHHHHHH-------HHHHHhcCChHHHHHHHHHHHHc------------CCC---
Q 003433 168 NRGEWSKAIQCFAFAVKREERKNDQGKLASAM-------ISILGRLGKVDLAKNIFETALNE------------GYG--- 225 (820)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~------------~~~--- 225 (820)
+.+++.+|++.|.++...+ |.....|..+ ...+.+.++..++...+...+.. |.-
T Consensus 18 ~~~d~~~A~~~F~~a~~~d---P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD---ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC---hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 5788889999999888875 4444577766 56666666666666666665541 100
Q ss_pred -----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCC--
Q 003433 226 -----NTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPD-- 298 (820)
Q Consensus 226 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~-- 298 (820)
.-...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+ ++++|+..|+...... .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~-r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAE-RWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTT-CHHHHHHHHTTGGGCS-CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcC-CHHHHHHHHHHhhccC-CcccH
Confidence 013345567777888888888888888877643 44335555555667777 7888888887554421 111
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHchhC
Q 003433 299 RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQD--IFTYNTLLDAICKGAQMDLAFEIMAEMPAK 363 (820)
Q Consensus 299 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 363 (820)
...+..+..++...|++++|+..|++.......|. ......+..++.+.|+.++|..+|+++...
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 23566677777778888888888877765332132 335566677777777777777777777765
No 136
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.52 E-value=5.6e-07 Score=78.71 Aligned_cols=98 Identities=6% Similarity=-0.109 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHH
Q 003433 645 VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDML 723 (820)
Q Consensus 645 ~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 723 (820)
...|..++..+.+.|++++|...|+++++.+|.+..+..++...+ ..|++++|+..++++++++|.+ ...|..++.+|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-VRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHH
Confidence 446778899999999999999999999999999888777766555 6889999999999999999965 67799999999
Q ss_pred hhcCchHHHHHHHHHhhhhh
Q 003433 724 WHFGQKRGAQLVVLEGKRRQ 743 (820)
Q Consensus 724 ~~~g~~~~A~~~~~~~~~~~ 743 (820)
...|++++|...++++.+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999887765
No 137
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.51 E-value=3.7e-06 Score=77.26 Aligned_cols=129 Identities=15% Similarity=0.092 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 370 VTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGY 449 (820)
Q Consensus 370 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 449 (820)
..|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|+..+++..+.. +.+...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345566666777777777777777766653 3456667777777777777777777777776654 45566777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 003433 450 GKQGKYDEVRRMFEQMKADCVSPNLLTYST--LIDVYSKGGLYKEAMQIFREFK 501 (820)
Q Consensus 450 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~--li~~~~~~g~~~~A~~~~~~m~ 501 (820)
.+.|++++|...|+++.+.. +.+...+.. ++..+.+.|++++|+..+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77777777777777776652 223444422 2333555666666666666543
No 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.51 E-value=7.7e-06 Score=83.58 Aligned_cols=169 Identities=13% Similarity=0.025 Sum_probs=131.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---CC
Q 003433 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDR------VSYNTVLSIYAKLGRFEEALLVCKEMESSGIR---KD 438 (820)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~ 438 (820)
....+...+..+...|++++|++.+.+..+.... .. ..+..+...+...|++++|+..+++..+.... +.
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 152 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence 3456667788899999999999999998876422 22 22445667778889999999999998764311 12
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---
Q 003433 439 --AVTYNALLGGYGKQGKYDEVRRMFEQMKADC-VSPN-----LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKA--- 507 (820)
Q Consensus 439 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--- 507 (820)
..+|+.+...|...|++++|...|++..+.. ..++ ..++..+...|.+.|++++|...+++.++.....
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~ 232 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence 4588999999999999999999999987310 0122 2588899999999999999999999998642110
Q ss_pred --CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 003433 508 --DVVLYSALIDALCKNGLVESA-VSLLDEMTK 537 (820)
Q Consensus 508 --~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 537 (820)
-..+|..+...|.+.|++++| ...|++...
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 167889999999999999999 777888774
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.51 E-value=7.1e-06 Score=81.30 Aligned_cols=51 Identities=8% Similarity=-0.032 Sum_probs=29.7
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHchh
Q 003433 311 RGGLWEAARNLFNEMVHRGIDQDIFTYNTL-------LDAICKGAQMDLAFEIMAEMPA 362 (820)
Q Consensus 311 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-------l~~~~~~g~~~~A~~~~~~m~~ 362 (820)
..++...|.+.|.++.+.. +.....|+.+ ...+.+.++..+++..+..-..
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~ 75 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ 75 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777777777777653 2345666666 4555555555555555554443
No 140
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.50 E-value=8.7e-07 Score=90.01 Aligned_cols=93 Identities=15% Similarity=0.009 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003433 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 238 (820)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 238 (820)
+..+...+.+.|++++|+..|+.++... +.+..++..++.+|.+.|++++|+..++++++..+ .+..++..+..+|
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 3334444444444444444444444432 22233444444444444444444444444444321 1344444444444
Q ss_pred HhcCChhHHHHHHHHHH
Q 003433 239 GRSGYCQEAISVFNSMK 255 (820)
Q Consensus 239 ~~~g~~~~A~~~~~~m~ 255 (820)
...|++++|+..|++..
T Consensus 83 ~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 44444444444444433
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.49 E-value=8.4e-07 Score=80.19 Aligned_cols=97 Identities=14% Similarity=0.066 Sum_probs=64.8
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 235 (820)
++.+..+...+.+.|++++|++.|++++..+ |.+..++..++.+|...|++++|+..|+++++..+. +..+|..+.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg 111 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD---FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHH
Confidence 3445556666777777777777777777663 444556666777777777777777777777665433 556666777
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 003433 236 SAYGRSGYCQEAISVFNSMKR 256 (820)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~ 256 (820)
.+|.+.|++++|+..|++..+
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777777665
No 142
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.48 E-value=5.7e-06 Score=71.47 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 477 YSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (820)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (820)
+..+...|...|++++|..+|+++.+... .+..++..+...|...|++++|...|+++.
T Consensus 46 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 46 WYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33333333333333333333333333221 133333333333444444444444444333
No 143
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.47 E-value=3.3e-07 Score=95.85 Aligned_cols=151 Identities=14% Similarity=0.057 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHH
Q 003433 170 GEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT--------------VYAFSALI 235 (820)
Q Consensus 170 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~li 235 (820)
+++++|++.|+...... +.....+..++..|.+.|++++|+..|++++....... ..+|..+.
T Consensus 127 ~~~~~A~~~~~~a~~~~---p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK---LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEECCCCGGGCCHHHH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 34555666665554432 33445677788888888888888888888877643321 45666666
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 003433 236 SAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW 315 (820)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 315 (820)
.+|.+.|++++|+..|++.++.... +...|..+..++...| ++++|+..|+++++.... +...+..+..++.+.|+.
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVN-DFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666654322 4556666666666666 666666666666654322 445555566666666666
Q ss_pred HHH-HHHHHHHH
Q 003433 316 EAA-RNLFNEMV 326 (820)
Q Consensus 316 ~~A-~~~~~~~~ 326 (820)
++| ..+|..|.
T Consensus 281 ~~a~~~~~~~~~ 292 (336)
T 1p5q_A 281 LAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555 33444443
No 144
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.46 E-value=6.3e-06 Score=71.21 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003433 476 TYSTLIDVYSKGGLYKEAMQIFREFK 501 (820)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~~m~ 501 (820)
++..+...|...|++++|...|+++.
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 79 AWYNLGNAYYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33333333444444444444444333
No 145
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.45 E-value=6.2e-07 Score=77.80 Aligned_cols=95 Identities=11% Similarity=-0.045 Sum_probs=82.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhc
Q 003433 648 FSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHF 726 (820)
Q Consensus 648 ~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 726 (820)
+..++..+.+.|++++|...|+++++.+|.+...+..+...+ ..|++++|+..++++++++|.+ ...+..|+.+|.+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc
Confidence 556778889999999999999999999999888877765555 5889999999999999999965 66799999999999
Q ss_pred CchHHHHHHHHHhhhhh
Q 003433 727 GQKRGAQLVVLEGKRRQ 743 (820)
Q Consensus 727 g~~~~A~~~~~~~~~~~ 743 (820)
|++++|...++++.+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999887654
No 146
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.45 E-value=8.8e-07 Score=81.69 Aligned_cols=100 Identities=12% Similarity=0.024 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHH
Q 003433 644 NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDM 722 (820)
Q Consensus 644 d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 722 (820)
+...+..++..|.+.|++++|++.|+++++.+|.+..++.++...+ ..|++++|+..|+++++++|.+ ...|..++.+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY-SKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence 4566889999999999999999999999999998888777766555 6889999999999999999965 7779999999
Q ss_pred HhhcCchHHHHHHHHHhhhhhh
Q 003433 723 LWHFGQKRGAQLVVLEGKRRQV 744 (820)
Q Consensus 723 ~~~~g~~~~A~~~~~~~~~~~~ 744 (820)
|.+.|++++|.+.++++.+...
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHS
T ss_pred HHHccCHHHHHHHHHHHHHhCC
Confidence 9999999999999999887654
No 147
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.44 E-value=1.5e-06 Score=83.06 Aligned_cols=26 Identities=8% Similarity=-0.137 Sum_probs=12.3
Q ss_pred HHHHHHHhhcCchhhhHHhHHHHhhh
Q 003433 548 NSIIDAFGRSATTECTVDDVERDLGK 573 (820)
Q Consensus 548 ~~ll~~~~~~g~~~~a~~~~~~~l~~ 573 (820)
..+..++...|++++|+..++++++.
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 34444444445555555444444444
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.43 E-value=1.6e-06 Score=81.05 Aligned_cols=120 Identities=13% Similarity=0.086 Sum_probs=76.4
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 003433 416 KLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDV-YSKGGLY--KE 492 (820)
Q Consensus 416 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~~ 492 (820)
..|++++|+..+++..+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..+ |...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4456666666666665543 4456666666667777777777777777665542 3355566666666 6667776 77
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 493 AMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (820)
Q Consensus 493 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (820)
|...|+++.+..+. +...|..+...|...|++++|+..|+++++.
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 77777777765432 5666777777777777777777777777764
No 149
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.43 E-value=1.5e-06 Score=83.13 Aligned_cols=157 Identities=11% Similarity=0.052 Sum_probs=93.1
Q ss_pred HcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhc
Q 003433 167 GNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE----G-YGNTVYAFSALISAYGRS 241 (820)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~ 241 (820)
...|++++|.+.++..... +.....++..++..+...|++++|...|++++.. + ......++..+...|...
T Consensus 3 ~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH---PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp ----CHHHHHHHHHHHHTS---TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 4578888888855554332 2345567788888888888888888888887652 1 112345677777788888
Q ss_pred CChhHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHH
Q 003433 242 GYCQEAISVFNSMKRY----NLKP--NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGV-QPD----RITFNSLLAVCS 310 (820)
Q Consensus 242 g~~~~A~~~~~~m~~~----~~~p--~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~ 310 (820)
|++++|.+.|++..+. +-.+ ....+..+...+...| ++++|...+++.+.... ..+ ..++..+...+.
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 158 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFG-DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQ 158 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 8888888888776542 1011 1234555666666666 67777777666653210 001 122345555556
Q ss_pred hCCCHHHHHHHHHHHHH
Q 003433 311 RGGLWEAARNLFNEMVH 327 (820)
Q Consensus 311 ~~g~~~~A~~~~~~~~~ 327 (820)
..|++++|...+++..+
T Consensus 159 ~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 159 QEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHH
Confidence 66666666666555543
No 150
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.42 E-value=6.3e-06 Score=71.93 Aligned_cols=60 Identities=20% Similarity=0.071 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 476 TYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (820)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (820)
.+..+...|...|++++|...+++..+.... +...|..+...|...|++++|...|++..
T Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 48 YFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3333333333344444444444333332211 23333334444444444444444444443
No 151
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.40 E-value=4.9e-06 Score=73.04 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003433 440 VTYNALLGGYGKQGKYDEVRRMFEQM 465 (820)
Q Consensus 440 ~~~~~li~~~~~~g~~~~A~~~~~~m 465 (820)
..+..+...|...|++++|...|++.
T Consensus 51 ~~~~~la~~~~~~~~~~~A~~~~~~a 76 (133)
T 2lni_A 51 KLYSNRAACYTKLLEFQLALKDCEEC 76 (133)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33333333333333333333333333
No 152
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.39 E-value=2.2e-06 Score=76.04 Aligned_cols=100 Identities=10% Similarity=-0.092 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHH
Q 003433 644 NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDM 722 (820)
Q Consensus 644 d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 722 (820)
+...+..++..+...|++++|...|++++..+|.+..+...+...+ ..|++++|+..++++++++|.+ ...+..++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh-HHHHHHHHHH
Confidence 5778899999999999999999999999999998887776665555 6889999999999999999965 6779999999
Q ss_pred HhhcCchHHHHHHHHHhhhhhh
Q 003433 723 LWHFGQKRGAQLVVLEGKRRQV 744 (820)
Q Consensus 723 ~~~~g~~~~A~~~~~~~~~~~~ 744 (820)
|...|++++|...++++.+...
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHCh
Confidence 9999999999999998877654
No 153
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.39 E-value=1.4e-06 Score=81.42 Aligned_cols=123 Identities=6% Similarity=0.085 Sum_probs=86.7
Q ss_pred HHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCh
Q 003433 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA-YGRSGYC 244 (820)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~ 244 (820)
+...|++++|+..|+.++... +.+..++..++.+|...|++++|...|+++.+... .+...+..+..+ |...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTC
T ss_pred hhhccCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCc
Confidence 345677888888888877764 44456777788888888888888888888877643 366777777777 7777887
Q ss_pred --hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Q 003433 245 --QEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNG 294 (820)
Q Consensus 245 --~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g 294 (820)
++|+..|+++.+.... +...+..+...+...| ++++|...|+++++..
T Consensus 96 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSN-EITALMLLASDAFMQA-NYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhhC
Confidence 8888888887764322 5667777777777788 7888888888877753
No 154
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.39 E-value=5.5e-06 Score=72.31 Aligned_cols=60 Identities=15% Similarity=0.199 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003433 406 SYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMK 466 (820)
Q Consensus 406 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 466 (820)
.+..+...+...|++++|+..+++..+.. +.+...+..+...|.+.|++++|...|++..
T Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 48 YFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33333333334444444444443333322 2223333334444444444444444444433
No 155
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.38 E-value=4.7e-06 Score=73.15 Aligned_cols=26 Identities=8% Similarity=0.208 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003433 440 VTYNALLGGYGKQGKYDEVRRMFEQM 465 (820)
Q Consensus 440 ~~~~~li~~~~~~g~~~~A~~~~~~m 465 (820)
..+..+..+|.+.|++++|.+.|++.
T Consensus 85 ~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 85 KGYTRKAAALEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33333333344444444444444333
No 156
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.38 E-value=2e-06 Score=77.61 Aligned_cols=98 Identities=13% Similarity=0.046 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 438 DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALID 517 (820)
Q Consensus 438 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 517 (820)
+...+..+...+.+.|++++|...|++.+... +.+...|..+..+|...|++++|+..|++.++.++. +...|..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 34555666667777777777777777766542 345666677777777777777777777777665433 5566666777
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 003433 518 ALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~ 537 (820)
+|...|++++|+..|++.++
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777765
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.35 E-value=9.3e-06 Score=70.77 Aligned_cols=98 Identities=15% Similarity=0.175 Sum_probs=79.1
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 235 (820)
.+.+..+...+.+.|++++|++.|+.++... +.+..++..++.++.+.|++++|+..|+++++..+. +..+|..+.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg 79 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA---PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 3456667778888899999999998888874 445568888888888899999999999888887543 677888888
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 003433 236 SAYGRSGYCQEAISVFNSMKRY 257 (820)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~ 257 (820)
.+|...|++++|+..|++..+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHh
Confidence 8888888888888888888763
No 158
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.30 E-value=2e-05 Score=88.03 Aligned_cols=175 Identities=10% Similarity=0.054 Sum_probs=119.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC
Q 003433 489 LYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGL----------VESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSA 558 (820)
Q Consensus 489 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 558 (820)
..++|++.++++++.+++ +...|+.-..++...|+ ++++++.++++++...+ +..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 345667777777666544 55666665555555555 66666666666654211 3445555444444444
Q ss_pred chhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHH
Q 003433 559 TTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHK 638 (820)
Q Consensus 559 ~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~ 638 (820)
.. ++++++++++++++
T Consensus 122 ~~----------------------------------------------------------------~~~~el~~~~k~l~ 137 (567)
T 1dce_A 122 EP----------------------------------------------------------------NWARELELCARFLE 137 (567)
T ss_dssp SC----------------------------------------------------------------CHHHHHHHHHHHHH
T ss_pred cc----------------------------------------------------------------cHHHHHHHHHHHHh
Confidence 11 23456667777776
Q ss_pred CCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCchhHHHHHHHhcc---------------ccchHHHHHHHHH
Q 003433 639 LKIKPNVVTFSAILNACSRCN-SFEDASMLLEELRLFDNQVYGVAHGLLMGY---------------RDNIWVQALSLFD 702 (820)
Q Consensus 639 ~~~~Pd~~~~~~ll~a~~~~g-~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~A~~~~~ 702 (820)
...+ |..+|+.-..++.+.| .++++.++++++.+.+|.++.+++.....+ ..+.+++|.+.++
T Consensus 138 ~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~ 216 (567)
T 1dce_A 138 ADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQ 216 (567)
T ss_dssp HCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHH
T ss_pred hccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHH
Confidence 3322 6667777777788888 889999999999999999888877643221 1267899999999
Q ss_pred HHhhcCCCcchhHHHHHHHHHhhcCchHH
Q 003433 703 EVKLMDSSTASAFYNALTDMLWHFGQKRG 731 (820)
Q Consensus 703 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 731 (820)
++++.+|++ ...|+.+.+++.+.|++++
T Consensus 217 ~ai~~~P~~-~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 217 NAFFTDPND-QSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHCSSC-SHHHHHHHHHHSCCCCCSC
T ss_pred HHHhhCCCC-ccHHHHHHHHHhcCCCccc
Confidence 999999976 5669999999999998666
No 159
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.30 E-value=0.00013 Score=78.95 Aligned_cols=169 Identities=9% Similarity=-0.053 Sum_probs=97.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHH
Q 003433 407 YNTVLSIYAKLGRFEEALLVCKEMESSGI-RKDA----VTYNALLGGYGKQGKYDEVRRMFEQMKA----DCVSPN-LLT 476 (820)
Q Consensus 407 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~ 476 (820)
+..|+..|.+.|++++|.+.+..+...-- ..+. .+.+.+...+...|+.++|..++++... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 45566666666666666666655432100 0111 1223333344455677777777766543 222222 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC-C-C--HH
Q 003433 477 YSTLIDVYSKGGLYKEAMQIFREFKQA--GL--KA-DVVLYSALIDALCKNGLVESAVSLLDEMTKE--GIR-P-N--VV 545 (820)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~m~~~--~~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~-p-~--~~ 545 (820)
+..|...|...|++++|..+++++... +. .+ ...+|..++..|...|++++|..++++.+.. .+. | . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 666777777777777777777776532 11 11 2456777777788888888888887776542 111 1 1 13
Q ss_pred HHHHHHHHHhhcCchhhhHHhHHHHhhhhh
Q 003433 546 TYNSIIDAFGRSATTECTVDDVERDLGKQK 575 (820)
Q Consensus 546 ~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~ 575 (820)
.+..+...+...|++++|...+.+++....
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFESYH 247 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 455556666777888888777777665443
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.29 E-value=1.3e-06 Score=83.50 Aligned_cols=88 Identities=11% Similarity=-0.034 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 440 VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDAL 519 (820)
Q Consensus 440 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 519 (820)
..|..+..+|.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|...|++..+.... +...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence 344444444455555555555555444431 223444445555555555555555555555443322 344444444444
Q ss_pred HHcCCHHHHH
Q 003433 520 CKNGLVESAV 529 (820)
Q Consensus 520 ~~~g~~~~A~ 529 (820)
...|+.+++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.28 E-value=2.4e-06 Score=72.32 Aligned_cols=98 Identities=11% Similarity=0.027 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCC--cchhHHHHHHH
Q 003433 645 VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSS--TASAFYNALTD 721 (820)
Q Consensus 645 ~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~ 721 (820)
...+..++..+...|++++|...|+++.+.+|.+..+...+...+ ..|++++|+..++++++.+|. + ...+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN-KDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch-HHHHHHHHH
Confidence 445778889999999999999999999998888777666655544 578999999999999999996 5 677999999
Q ss_pred HHhhc-CchHHHHHHHHHhhhhh
Q 003433 722 MLWHF-GQKRGAQLVVLEGKRRQ 743 (820)
Q Consensus 722 ~~~~~-g~~~~A~~~~~~~~~~~ 743 (820)
+|.+. |++++|.++++.+.+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 99999 99999999998876654
No 162
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.28 E-value=3.2e-06 Score=75.52 Aligned_cols=97 Identities=9% Similarity=-0.044 Sum_probs=78.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCCc-------hhH-----HHHHHHhcc-ccchHHHHHHHHHHHhhc------
Q 003433 647 TFSAILNACSRCNSFEDASMLLEELRLFDNQ-------VYG-----VAHGLLMGY-RDNIWVQALSLFDEVKLM------ 707 (820)
Q Consensus 647 ~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~-------~~~-----~~~~~~~~~-~~~~~~~A~~~~~~~~~~------ 707 (820)
.+...++.+.+.|++++|...|+++++.+|. +.. ++.+....+ ..|++++|+..+++++++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 4567778888999999999999999988887 333 444444333 568889999999998888
Q ss_pred -CCCcchhHH----HHHHHHHhhcCchHHHHHHHHHhhhhhh
Q 003433 708 -DSSTASAFY----NALTDMLWHFGQKRGAQLVVLEGKRRQV 744 (820)
Q Consensus 708 -~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 744 (820)
+|++ ...| +.++.+|...|++++|...++++.+...
T Consensus 93 ~~pd~-~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 93 LNQDE-GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp TTSTH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCch-HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9965 5567 8999999999999999999999987654
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.28 E-value=1.4e-06 Score=83.30 Aligned_cols=87 Identities=18% Similarity=0.068 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 003433 475 LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRP-NVVTYNSIIDA 553 (820)
Q Consensus 475 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~ 553 (820)
..|..+..+|.+.|++++|+..+++.++... .+...|..+..+|...|++++|+..|++.++. .| +..++..+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHH
Confidence 4556666666677777777777776666543 25666666666777777777777777776653 23 34455566666
Q ss_pred HhhcCchhhhH
Q 003433 554 FGRSATTECTV 564 (820)
Q Consensus 554 ~~~~g~~~~a~ 564 (820)
+...++.+++.
T Consensus 166 ~~~~~~~~~~~ 176 (198)
T 2fbn_A 166 VNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 66655555554
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.28 E-value=1.3e-05 Score=70.03 Aligned_cols=104 Identities=17% Similarity=0.140 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HHHHHH
Q 003433 441 TYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLK--AD----VVLYSA 514 (820)
Q Consensus 441 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~----~~~~~~ 514 (820)
.+..+...+.+.|++++|+..|++.++.. +.+...|+.+..+|.+.|++++|++.|++.++.+.. .+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 44455555666666666666666655542 334555556666666666666666666655542211 11 134555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003433 515 LIDALCKNGLVESAVSLLDEMTKEGIRPNVVTY 547 (820)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 547 (820)
+..++...|++++|++.|++.++. .||..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 666666677777777777766652 3454443
No 165
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.27 E-value=3.1e-05 Score=65.92 Aligned_cols=99 Identities=14% Similarity=0.062 Sum_probs=75.6
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 235 (820)
.+.+..+...+...|++++|++.|+.++... +.+..++..++.++...|++++|...++++.+... .+...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a 79 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD---PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHH
Confidence 3456667777888888888888888888764 34455777788888888888888888888877643 3677788888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC
Q 003433 236 SAYGRSGYCQEAISVFNSMKRYN 258 (820)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~~ 258 (820)
.++...|++++|.+.|++..+..
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHcC
Confidence 88888888888888888887643
No 166
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.22 E-value=4.7e-05 Score=64.73 Aligned_cols=94 Identities=20% Similarity=0.228 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003433 372 YSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK 451 (820)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 451 (820)
+..+...+...|++++|+..|++..... +.+...+..+...|...|++++|...+++..+.. +.+...+..+..+|.+
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3344444444444444444444444332 2233344444444444444444444444443332 2233444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 003433 452 QGKYDEVRRMFEQMKA 467 (820)
Q Consensus 452 ~g~~~~A~~~~~~m~~ 467 (820)
.|++++|...|++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 4444444444444443
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.21 E-value=1.8e-05 Score=72.66 Aligned_cols=99 Identities=18% Similarity=0.008 Sum_probs=84.5
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 235 (820)
.+.+..+...+.+.|++++|++.|++++... +.+..++..++.+|.+.|++++|+..|+++++.... +..+|..+.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA---PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 4557778888999999999999999999874 455678889999999999999999999999887543 688899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC
Q 003433 236 SAYGRSGYCQEAISVFNSMKRYN 258 (820)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~~ 258 (820)
.+|.+.|++++|+..|++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999988643
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.21 E-value=9.6e-06 Score=70.17 Aligned_cols=96 Identities=10% Similarity=-0.036 Sum_probs=82.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003433 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (820)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 237 (820)
.+..+...+.+.|++++|+..|+++++.. |.+..++..++.++...|++++|+..|+++++..+. +..++..+..+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~ 94 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVS 94 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 45567778889999999999999999874 555678889999999999999999999999987544 78889999999
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 003433 238 YGRSGYCQEAISVFNSMKRY 257 (820)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~ 257 (820)
|.+.|++++|+..|++..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998864
No 169
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.21 E-value=1.6e-05 Score=71.10 Aligned_cols=96 Identities=14% Similarity=0.018 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (820)
+.+..+...+.+.|++++|+..|++++..+ |.+..++..++.++.+.|++++|+..|++++..++. +...+..+..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD---HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 345556777888888888888888888774 445567778888888888888888888888877543 6677788888
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 003433 237 AYGRSGYCQEAISVFNSMKR 256 (820)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~ 256 (820)
+|...|++++|+..|++..+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888888765
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.20 E-value=2e-05 Score=66.51 Aligned_cols=99 Identities=16% Similarity=0.100 Sum_probs=74.7
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGN--TVYAFSA 233 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ 233 (820)
.+.+..+...+...|++++|+..|++++... +.+..++..++.++...|++++|...|+++++.. +. +..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD---PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 4556667777888888888888888888764 3345577778888888888888888888887763 33 5777888
Q ss_pred HHHHHHhc-CChhHHHHHHHHHHhCC
Q 003433 234 LISAYGRS-GYCQEAISVFNSMKRYN 258 (820)
Q Consensus 234 li~~~~~~-g~~~~A~~~~~~m~~~~ 258 (820)
+..++.+. |++++|++.|++.....
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 88888888 88888888888877643
No 171
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.20 E-value=5.8e-06 Score=75.90 Aligned_cols=100 Identities=10% Similarity=-0.117 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhc------------------CCchhHHHHHHHhcc-ccchHHHHHHHHHHHh
Q 003433 645 VVTFSAILNACSRCNSFEDASMLLEELRLF------------------DNQVYGVAHGLLMGY-RDNIWVQALSLFDEVK 705 (820)
Q Consensus 645 ~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~------------------~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~ 705 (820)
...+...++.+.+.|++++|...|.+++.. ++....+..++...+ ..|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345778889999999999999999999876 444445555554444 6889999999999999
Q ss_pred hcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhh
Q 003433 706 LMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVW 745 (820)
Q Consensus 706 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 745 (820)
+++|.+ ...|..+|.+|...|++++|...++++.+....
T Consensus 91 ~~~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 91 KREETN-EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred hcCCcc-hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 999965 667999999999999999999999998877543
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.20 E-value=2e-06 Score=93.97 Aligned_cols=110 Identities=8% Similarity=-0.065 Sum_probs=92.7
Q ss_pred hhhHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHH
Q 003433 623 RQEILCILGVFQKMHKLKIKPN----------------VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLL 686 (820)
Q Consensus 623 ~~~~~~Al~~~~~m~~~~~~Pd----------------~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~ 686 (820)
.+++++|+..|++.++ +.|+ ...|..++.+|.+.|++++|+..|+++++.+|.+...++.+.
T Consensus 281 ~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g 358 (457)
T 1kt0_A 281 GGKYMQAVIQYGKIVS--WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRG 358 (457)
T ss_dssp TTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 3588899999999987 3443 477999999999999999999999999999999888777776
Q ss_pred hcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHH
Q 003433 687 MGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLV 735 (820)
Q Consensus 687 ~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 735 (820)
..+ ..+++++|+..|+++++++|++ ...+..++.++.+.|++++|.+.
T Consensus 359 ~a~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 359 EAQLLMNEFESAKGDFEKVLEVNPQN-KAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 655 5889999999999999999965 67799999999999999988754
No 173
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.16 E-value=3e-05 Score=68.42 Aligned_cols=98 Identities=15% Similarity=0.024 Sum_probs=76.6
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003433 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (820)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 234 (820)
+++.+..+...+...|++++|+..|..++... +.+..++..++.++...|++++|...|+++++.... +..+|..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC---cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 45667777888888888888888888888774 444567788888888888888888888888876533 67788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 003433 235 ISAYGRSGYCQEAISVFNSMKR 256 (820)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~ 256 (820)
..+|...|++++|+..|++..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888888888888887765
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.15 E-value=2.2e-05 Score=68.35 Aligned_cols=111 Identities=14% Similarity=0.190 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HHHHH
Q 003433 440 VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLK--AD----VVLYS 513 (820)
Q Consensus 440 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~----~~~~~ 513 (820)
..|..+...+...|++++|...|++..... +.+...+..+...|...|++++|...|+++.+.... ++ ..+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345555566666666666666666655542 334555666666666666666666666666543211 11 55666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 514 ALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDA 553 (820)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 553 (820)
.+...|...|++++|.+.|+++.+. .|+...+..+..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 6777777777777777777777663 3455444444433
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=3.9e-05 Score=68.64 Aligned_cols=114 Identities=18% Similarity=0.131 Sum_probs=89.4
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003433 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (820)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 234 (820)
..+.+..+...+...|++++|++.|+.+++..+.......++..++.++...|++++|+..++++++... .+..++..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ 105 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALYRR 105 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHHHH
Confidence 3556777888899999999999999999987522111156888899999999999999999999988743 368889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003433 235 ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVI 270 (820)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 270 (820)
..+|...|++++|+..|++..+.... +...+..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 140 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALR 140 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHH
Confidence 99999999999999999999874322 344444333
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.12 E-value=5.4e-05 Score=65.93 Aligned_cols=99 Identities=11% Similarity=-0.058 Sum_probs=78.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHH
Q 003433 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT---VYAFSAL 234 (820)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l 234 (820)
.+..+...+...|++++|++.|+.++...+..+....++..++.++.+.|++++|...|+++++..+. + ..++..+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l 82 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKL 82 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHH
Confidence 44556777888999999999999998875433322257778889999999999999999999886433 4 6778888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 003433 235 ISAYGRSGYCQEAISVFNSMKRY 257 (820)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~ 257 (820)
..+|.+.|++++|+..|+++.+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999999988864
No 177
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=0.0001 Score=65.87 Aligned_cols=99 Identities=16% Similarity=-0.014 Sum_probs=68.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003433 437 KDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPN----LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLY 512 (820)
Q Consensus 437 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 512 (820)
.+...+..+...+.+.|++++|...|++..+. .|+ ...+..+...|...|++++|+..+++..+.... +...|
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHH
Confidence 34566666777777777777777777777664 344 466667777777777777777777777665432 56677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 513 SALIDALCKNGLVESAVSLLDEMTKE 538 (820)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (820)
..+..+|...|++++|...|++.++.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777777777777777777777763
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.11 E-value=2.9e-06 Score=73.01 Aligned_cols=86 Identities=10% Similarity=-0.008 Sum_probs=57.4
Q ss_pred cCCHHHHHHHHHHHhhc---CCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHH
Q 003433 658 CNSFEDASMLLEELRLF---DNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQ 733 (820)
Q Consensus 658 ~g~~~eA~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 733 (820)
.|++++|+..|+++++. +|.+..+..++...+ ..|++++|+..++++++.+|++ ...+..++.+|.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH-QALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCCHHHHH
Confidence 46677777777777766 355444444444433 4667777777777777777755 566788888888888888888
Q ss_pred HHHHHhhhhhh
Q 003433 734 LVVLEGKRRQV 744 (820)
Q Consensus 734 ~~~~~~~~~~~ 744 (820)
.+++++.+...
T Consensus 82 ~~~~~al~~~p 92 (117)
T 3k9i_A 82 ELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhCC
Confidence 88887766543
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.10 E-value=2.6e-05 Score=67.88 Aligned_cols=58 Identities=16% Similarity=0.249 Sum_probs=24.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003433 372 YSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEM 430 (820)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~ 430 (820)
|..+...+...|++++|+..|++..+.. +.+...+..+...|...|++++|...++++
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3334444444444444444444444332 223334444444444444444444444443
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.09 E-value=5.5e-06 Score=90.89 Aligned_cols=114 Identities=8% Similarity=-0.060 Sum_probs=95.0
Q ss_pred hhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHH
Q 003433 621 RCRQEILCILGVFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQAL 698 (820)
Q Consensus 621 ~~~~~~~~Al~~~~~m~~~~~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~ 698 (820)
...+++++|++.|++.++ +.|+ ..+|..++.+|.+.|++++|.+.|+++++.+|.+.....++...+ ..|++++|+
T Consensus 17 ~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 345688999999999988 5664 778999999999999999999999999999999888777776655 689999999
Q ss_pred HHHHHHhhcCCCcchhHHHHHHHH--HhhcCchHHHHHHHH
Q 003433 699 SLFDEVKLMDSSTASAFYNALTDM--LWHFGQKRGAQLVVL 737 (820)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 737 (820)
..++++++++|++ ...+..++.+ +.+.|++++|.++++
T Consensus 95 ~~~~~al~~~p~~-~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPHD-KDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTTC-TTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999965 5568888888 889999999999987
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.08 E-value=1.9e-05 Score=68.96 Aligned_cols=96 Identities=13% Similarity=0.009 Sum_probs=76.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhcCCchh---HHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcc--hhHHHHHHHH
Q 003433 649 SAILNACSRCNSFEDASMLLEELRLFDNQVY---GVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTA--SAFYNALTDM 722 (820)
Q Consensus 649 ~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~ 722 (820)
..++..+...|++++|...|+++...+|.+. .+...+...+ ..|++++|+..++++++.+|++. ...+..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 4566778889999999999999998877765 3444444333 67899999999999999998552 4568889999
Q ss_pred HhhcCchHHHHHHHHHhhhhhh
Q 003433 723 LWHFGQKRGAQLVVLEGKRRQV 744 (820)
Q Consensus 723 ~~~~g~~~~A~~~~~~~~~~~~ 744 (820)
|.+.|++++|..+++++.+...
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHcCCHHHHHHHHHHHHHHCC
Confidence 9999999999999998876643
No 182
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=0.00011 Score=79.72 Aligned_cols=200 Identities=7% Similarity=-0.033 Sum_probs=100.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccCCh--------------hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQ--------------GKLASAMISILGRLGKVDLAKNIFETALNEGYG-N 226 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~ 226 (820)
-.+.+.+.|++++|++.|..+++......+. ..++..++..|.+.|++++|.+.+..+.+.-.. .
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 3555777888889998888888764322211 112344555555555555555555444321000 0
Q ss_pred CH----HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----CCCCCC
Q 003433 227 TV----YAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLR----NGVQPD 298 (820)
Q Consensus 227 ~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~----~g~~p~ 298 (820)
+. .+.+.+...+...| +++.|..++++... .+..+.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~------------------------------------~~~~a~~~~~~~~~~~~~~~~~~~ 133 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPD------------------------------------SLDDQIFVCEKSIEFAKREKRVFL 133 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCS------------------------------------CHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred chHHHHHHHHHHHHHHhCCC------------------------------------CHHHHHHHHHHHHHHHHHhCccHH
Confidence 00 11222222222333 45555555544432 111111
Q ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhC----CCCCC
Q 003433 299 -RITFNSLLAVCSRGGLWEAARNLFNEMVHR--GI---DQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK----NISPN 368 (820)
Q Consensus 299 -~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--g~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~p~ 368 (820)
..++..|...+...|++++|..+++++... +. .....++..++..|...|++++|..++++.... +..+.
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 213 (434)
T 4b4t_Q 134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQ 213 (434)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchH
Confidence 334555566666666666666666655432 11 111345666666666666666666666654421 11111
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 369 --VVTYSTMIDGYAKAGRLDDALNMFSEMKF 397 (820)
Q Consensus 369 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 397 (820)
...+..+...+...|++++|...|.+..+
T Consensus 214 ~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 214 TVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 23455556666667777777776666543
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.02 E-value=5.9e-05 Score=69.00 Aligned_cols=101 Identities=16% Similarity=0.063 Sum_probs=81.5
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccc---------------cCChhHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREER---------------KNDQGKLASAMISILGRLGKVDLAKNIFETAL 220 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 220 (820)
.+.+......+.+.|++++|+..|..++..-.. .+....++..++.+|.+.|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445667888899999999999999999886110 13344678888888999999999999999988
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003433 221 NEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRY 257 (820)
Q Consensus 221 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 257 (820)
+.++ .+..+|..+..+|...|++++|+..|++..+.
T Consensus 91 ~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 8753 37888888899999999999999999888874
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.01 E-value=6.9e-06 Score=89.71 Aligned_cols=117 Identities=15% Similarity=0.069 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHH
Q 003433 171 EWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT--------------VYAFSALIS 236 (820)
Q Consensus 171 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~li~ 236 (820)
++++|++.|+...... +.....+..++..|.+.|++++|+..|+++++...... ..+|..+..
T Consensus 249 ~~~~A~~~~~~~~~~~---~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEK---LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEECCCCGGGSCHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHH---HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 4445555555444332 23344666777777777888888877777766432211 344444444
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003433 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLR 292 (820)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~ 292 (820)
+|.+.|++++|+..|++.++.... +...|..+..++...| ++++|+..|+++++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g-~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMN-EFESAKGDFEKVLE 379 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHT
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHcc-CHHHHHHHHHHHHH
Confidence 444444444444444444432211 3334444444444444 44444444444443
No 185
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.01 E-value=6.1e-05 Score=67.22 Aligned_cols=102 Identities=14% Similarity=0.049 Sum_probs=74.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC
Q 003433 477 YSTLIDVYSKGGLYKEAMQIFREFKQAGLKA------D-----VVLYSALIDALCKNGLVESAVSLLDEMTKE-----GI 540 (820)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p------~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~ 540 (820)
+......+.+.|++++|+..|++.++..+.. + ...|..+..++.+.|++++|+..|++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444555566666666666666666543221 2 237888888888888888888888888873 12
Q ss_pred CCCHH-HH----HHHHHHHhhcCchhhhHHhHHHHhhhhhhhh
Q 003433 541 RPNVV-TY----NSIIDAFGRSATTECTVDDVERDLGKQKESA 578 (820)
Q Consensus 541 ~p~~~-~~----~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~ 578 (820)
.|+.. .| .....++...|++++|+..++++++..|+..
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 67665 78 8889999999999999999999999988764
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.98 E-value=1.5e-05 Score=68.50 Aligned_cols=89 Identities=10% Similarity=0.044 Sum_probs=71.7
Q ss_pred cCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 003433 168 NRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEA 247 (820)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 247 (820)
..|++++|+..|++++..+...+.+..++..++.+|...|++++|+..|+++++..+. +..++..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 3678999999999999873222455678889999999999999999999999987544 688899999999999999999
Q ss_pred HHHHHHHHhC
Q 003433 248 ISVFNSMKRY 257 (820)
Q Consensus 248 ~~~~~~m~~~ 257 (820)
+..|++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.98 E-value=3.1e-05 Score=70.28 Aligned_cols=98 Identities=15% Similarity=0.058 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HH
Q 003433 476 TYSTLIDVYSKGGLYKEAMQIFREFKQAGLK-AD----VVLYSALIDALCKNGLVESAVSLLDEMTKE----GIRPN-VV 545 (820)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~ 545 (820)
++..+...|...|++++|...+++..+.... .+ ...+..+...+...|++++|...+++..+. +..+. ..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444455555555555555555554321000 01 234555555666666666666666655432 11111 22
Q ss_pred HHHHHHHHHhhcCchhhhHHhHHHHhhh
Q 003433 546 TYNSIIDAFGRSATTECTVDDVERDLGK 573 (820)
Q Consensus 546 ~~~~ll~~~~~~g~~~~a~~~~~~~l~~ 573 (820)
++..+...+...|++++|++.++++++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4555666666667777776666665554
No 188
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.96 E-value=2.3e-05 Score=69.81 Aligned_cols=85 Identities=14% Similarity=0.044 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHH----------HHHHHHHHHhhcCCchhHHHHHHHhccc-c
Q 003433 624 QEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFE----------DASMLLEELRLFDNQVYGVAHGLLMGYR-D 691 (820)
Q Consensus 624 ~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~----------eA~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 691 (820)
+.+++|++.+++.++ +.| +...|..++.++...|+++ +|+..|+++++++|+...+++++...+. .
T Consensus 16 ~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 467789999998887 566 5677888888888877654 6666666666666655555555544442 1
Q ss_pred -----------chHHHHHHHHHHHhhcCCC
Q 003433 692 -----------NIWVQALSLFDEVKLMDSS 710 (820)
Q Consensus 692 -----------~~~~~A~~~~~~~~~~~~~ 710 (820)
+++++|+..|+++++++|+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 3556666666666666664
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.96 E-value=8e-05 Score=67.49 Aligned_cols=99 Identities=13% Similarity=0.031 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCC---hhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C----CH
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKND---QGKLASAMISILGRLGKVDLAKNIFETALNEGYG-N----TV 228 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~ 228 (820)
..+..+...+...|++++|++.|++++........ ...++..++..+...|++++|...++++...... . ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34566777788888888888888888765322111 1235667777788888888888888776543100 0 13
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003433 229 YAFSALISAYGRSGYCQEAISVFNSMK 255 (820)
Q Consensus 229 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 255 (820)
.++..+...+...|++++|.+.+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456666666777777777777766654
No 190
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.95 E-value=4.1e-05 Score=83.96 Aligned_cols=118 Identities=15% Similarity=0.110 Sum_probs=53.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003433 378 GYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDE 457 (820)
Q Consensus 378 ~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 457 (820)
.|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3444555555555555555442 2334455555555555555555555555555443 3344455555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 003433 458 VRRMFEQMKADCVSPNLLTYSTLIDV--YSKGGLYKEAMQIFR 498 (820)
Q Consensus 458 A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 498 (820)
|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555544431 1122223333322 444444555554444
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.93 E-value=4.9e-05 Score=82.76 Aligned_cols=141 Identities=9% Similarity=-0.009 Sum_probs=98.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHC---CC---CCCH-HHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchh
Q 003433 518 ALCKNGLVESAVSLLDEMTKE---GI---RPNV-VTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKD 590 (820)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~~---g~---~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 590 (820)
.+..+|++++|+.++++.++. -+ .|+. .+++.|..+|...|++++|..++++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~--------------------- 376 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARR--------------------- 376 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH---------------------
Confidence 355778888888888887642 12 2333 3788899999999999999876554
Q ss_pred hhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHH
Q 003433 591 VQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASMLLE 669 (820)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~ 669 (820)
|++++++.... -.|+ ..+++.|+..|..+|++++|..+|+
T Consensus 377 --------------------------------------aL~i~~~~lG~-~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~ 417 (490)
T 3n71_A 377 --------------------------------------MVDGYMKLYHH-NNAQLGMAVMRAGLTNWHAGHIEVGHGMIC 417 (490)
T ss_dssp --------------------------------------HHHHHHHHSCT-TCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------------------------------------HHHHHHHHcCC-CCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44455544321 2344 4559999999999999999999988
Q ss_pred HHhhcCCchhHHHHHHHhccccchHHHHHHHHHHHhhcCCC--cchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhhh
Q 003433 670 ELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSS--TASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWE 746 (820)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 746 (820)
+++++ +++.+ +|+ .....++.|...+...|++++|+.++..+++....+
T Consensus 418 ~Al~i--------------------------~~~~l--G~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~ 468 (490)
T 3n71_A 418 KAYAI--------------------------LLVTH--GPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNN 468 (490)
T ss_dssp HHHHH--------------------------HHHHT--CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHH--------------------------HHHHh--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 87631 22211 222 124456778888999999999999999887765443
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.86 E-value=1.4e-05 Score=83.32 Aligned_cols=118 Identities=5% Similarity=-0.099 Sum_probs=62.1
Q ss_pred hhhHHHHHHHHHHHHHCCCCCCHH------------------HHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHH
Q 003433 623 RQEILCILGVFQKMHKLKIKPNVV------------------TFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHG 684 (820)
Q Consensus 623 ~~~~~~Al~~~~~m~~~~~~Pd~~------------------~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~ 684 (820)
.+++++|+..|++.+. +.|+.. .|..++.+|.+.|++++|+..|+++++.+|.+..++..
T Consensus 192 ~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 269 (338)
T 2if4_A 192 EEKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFR 269 (338)
T ss_dssp SSCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3477889999999877 556654 67777788888888888888888888877777666666
Q ss_pred HHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHh-hcCchHHHHHHHHHhhhhh
Q 003433 685 LLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLW-HFGQKRGAQLVVLEGKRRQ 743 (820)
Q Consensus 685 ~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~ 743 (820)
+...+ ..|++++|+..|+++++++|.+ ...+..|+.+.. ..++.+++.++++++....
T Consensus 270 lg~a~~~~g~~~~A~~~l~~al~l~p~~-~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 270 RGKAKAELGQMDSARDDFRKAQKYAPDD-KAIRRELRALAEQEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 65554 5677888888888888888754 555777777633 3455667777776665443
No 193
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.86 E-value=1.6e-05 Score=70.81 Aligned_cols=89 Identities=13% Similarity=-0.022 Sum_probs=73.8
Q ss_pred ccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-cc----------chHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhh
Q 003433 657 RCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RD----------NIWVQALSLFDEVKLMDSSTASAFYNALTDMLWH 725 (820)
Q Consensus 657 ~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 725 (820)
+.+.+++|++.++...+.+|.+...+.++...+ .. +.+++|+..|+++++++|+. ...|+.||.+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~-~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-DEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHH
Confidence 557899999999999999999988877665443 22 24679999999999999965 6679999999998
Q ss_pred cC-----------chHHHHHHHHHhhhhhhhh
Q 003433 726 FG-----------QKRGAQLVVLEGKRRQVWE 746 (820)
Q Consensus 726 ~g-----------~~~~A~~~~~~~~~~~~~~ 746 (820)
.| ++++|.++|+++.+.+..+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 75 8999999999998876543
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.85 E-value=0.00013 Score=76.98 Aligned_cols=117 Identities=9% Similarity=0.005 Sum_probs=67.9
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHccc-------------ccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003433 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREE-------------RKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGY 224 (820)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 224 (820)
.+..+...+.+.|++++|++.|+++++... ..+....++..++.+|.+.|++++|+..++++++...
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 456677788888888888888888886211 0122334555666666666666666666666665432
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 003433 225 GNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKG 276 (820)
Q Consensus 225 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 276 (820)
.+..+|..+..+|.+.|++++|++.|++..+.... +...+..+...+...
T Consensus 305 -~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 305 -SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKI 354 (370)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHH
Confidence 24556666666666666666666666665553211 333444444443333
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.85 E-value=2.7e-05 Score=65.70 Aligned_cols=93 Identities=13% Similarity=-0.012 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcc-----hhHHH
Q 003433 644 NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTA-----SAFYN 717 (820)
Q Consensus 644 d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~ 717 (820)
+...+..++..+...|++++|.+.|+++++.+|.+..+..++...+ ..|++++|+..++++++++|++. ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4567888999999999999999999999999998887777666555 68899999999999999999651 34466
Q ss_pred HHHHHHhhcCchHHHHHHH
Q 003433 718 ALTDMLWHFGQKRGAQLVV 736 (820)
Q Consensus 718 ~l~~~~~~~g~~~~A~~~~ 736 (820)
.++.++...|++++|...+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHhHhhhHhHH
Confidence 7777777777777665544
No 196
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.83 E-value=0.00065 Score=75.80 Aligned_cols=173 Identities=8% Similarity=-0.017 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-
Q 003433 385 LDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGR----------FEEALLVCKEMESSGIRKDAVTYNALLGGYGKQG- 453 (820)
Q Consensus 385 ~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g- 453 (820)
-++|++.++++.+.. +-+..+|+.--.++...|+ ++++++.++++.+.. +.+..+|+.-..++.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 456677777777664 3445566666666666666 888888888888766 677888888888888888
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---------
Q 003433 454 -KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGG-LYKEAMQIFREFKQAGLKADVVLYSALIDALCKN--------- 522 (820)
Q Consensus 454 -~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------- 522 (820)
+++++++.++++++.. +-|..+|+.-...+.+.| .++++++.++++++.++. |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 6788999999888864 457788888877788888 888899998888887765 888888887777663
Q ss_pred -----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhh
Q 003433 523 -----GLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTEC 562 (820)
Q Consensus 523 -----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 562 (820)
+.++++++.+++++.... -|...|..+...+.+.+..++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCccc
Confidence 557899999999987532 256688888888888877555
No 197
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.81 E-value=0.00019 Score=75.60 Aligned_cols=85 Identities=8% Similarity=-0.043 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 440 VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDAL 519 (820)
Q Consensus 440 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 519 (820)
.+|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|++..+.... +...+..+...+
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~ 351 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344444444445555555555554444432 223444444444444444444444444444443221 333344444444
Q ss_pred HHcCCHH
Q 003433 520 CKNGLVE 526 (820)
Q Consensus 520 ~~~g~~~ 526 (820)
...++.+
T Consensus 352 ~~~~~~~ 358 (370)
T 1ihg_A 352 QKIKAQK 358 (370)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4333333
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.79 E-value=5e-05 Score=64.78 Aligned_cols=81 Identities=17% Similarity=0.100 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhh
Q 003433 663 DASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKR 741 (820)
Q Consensus 663 eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 741 (820)
+|...|+++++.+|.+..+...+...+ ..|++++|+..++++++.+|.. ...|..++.+|...|++++|...++++.+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY-SVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666666666666655555544433 4566777777777777777754 56688999999999999999999988876
Q ss_pred hhh
Q 003433 742 RQV 744 (820)
Q Consensus 742 ~~~ 744 (820)
...
T Consensus 82 ~~~ 84 (115)
T 2kat_A 82 AAQ 84 (115)
T ss_dssp HHH
T ss_pred hcc
Confidence 543
No 199
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.78 E-value=8e-05 Score=77.58 Aligned_cols=147 Identities=14% Similarity=0.081 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (820)
+.+..+...+.+.|++++|+..|++++... +.+.. +...|+.+++...+. ..+|..+..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~--------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFM--------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHH--------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchh--------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 345667777888899999999998888763 22210 111222222221110 124555555
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhCCCH
Q 003433 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAV-CSRGGLW 315 (820)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~ 315 (820)
+|.+.|++++|+..|++.++... .+...|..+..++...| ++++|+..|+++++.... +...+..|... ....+..
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g-~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELG-QMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTT-CHHHHHHHHHHTTC------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554321 14455555555555555 555555555555443211 22333333333 1233445
Q ss_pred HHHHHHHHHHHH
Q 003433 316 EAARNLFNEMVH 327 (820)
Q Consensus 316 ~~A~~~~~~~~~ 327 (820)
+.+..+|..|..
T Consensus 316 ~~a~~~~~~~l~ 327 (338)
T 2if4_A 316 QKQKEMYKGIFK 327 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHHhhC
Confidence 555555555544
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.74 E-value=0.00097 Score=58.85 Aligned_cols=110 Identities=12% Similarity=-0.058 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 003433 419 RFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK----GGLYKEAM 494 (820)
Q Consensus 419 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~ 494 (820)
++++|++.|++..+.| .++.. |...|...+.+++|.+.|++..+.| +...+..|..+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4555555555555554 22222 4455555555555666666655543 55555556555555 55666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 003433 495 QIFREFKQAGLKADVVLYSALIDALCK----NGLVESAVSLLDEMTKEG 539 (820)
Q Consensus 495 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 539 (820)
+.|++..+.| +...+..|...|.. .++.++|+..|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666665543 45555556666655 566666666666666544
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.73 E-value=0.00012 Score=59.01 Aligned_cols=82 Identities=12% Similarity=0.135 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHH
Q 003433 645 VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDML 723 (820)
Q Consensus 645 ~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 723 (820)
...+..++..|...|++++|...|++++..+|.+..+...+...+ ..|++++|+..++++++++|.+ ...+..++.++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH
Confidence 456778888999999999999999999988887776666555444 5788999999999999998865 66688888888
Q ss_pred hhcC
Q 003433 724 WHFG 727 (820)
Q Consensus 724 ~~~g 727 (820)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.68 E-value=0.00018 Score=78.30 Aligned_cols=91 Identities=9% Similarity=0.014 Sum_probs=55.6
Q ss_pred HHHcCCCHHHHHHHHHHHHHc-----ccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C--CCCCHHHHH
Q 003433 165 ELGNRGEWSKAIQCFAFAVKR-----EERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE-----G--YGNTVYAFS 232 (820)
Q Consensus 165 ~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~ 232 (820)
.+..+|++++|+.++++++.. +...+....+++.|+.+|..+|++++|+.++++++.. | .+....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355667777777777776652 2223444556677777777777777777777666532 1 111244566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 003433 233 ALISAYGRSGYCQEAISVFNSMK 255 (820)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~ 255 (820)
.|...|...|++++|..+|++..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666777777776666666554
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.68 E-value=0.0011 Score=58.60 Aligned_cols=110 Identities=11% Similarity=-0.050 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 003433 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICK----GAQMDLAF 354 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~ 354 (820)
++++|+++|++..+.|. ++.. |...|...+.+++|.++|++..+.| +...+..|..+|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 34455555555554441 1221 3344444444555555555555443 44444445555544 44555555
Q ss_pred HHHHHchhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 003433 355 EIMAEMPAKNISPNVVTYSTMIDGYAK----AGRLDDALNMFSEMKFLG 399 (820)
Q Consensus 355 ~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 399 (820)
++|++..+.| +...+..|...|.. .+++++|+++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555544443 34444445445544 445555555555554443
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.00045 Score=57.94 Aligned_cols=91 Identities=20% Similarity=0.167 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-------HH
Q 003433 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-------VV 545 (820)
Q Consensus 473 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~ 545 (820)
+...+..+...+...|++++|++.|++.++.... +...|..+..+|.+.|++++|+..|+++++. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 4566777888888888899999888888876543 6788888888899999999999999998874 454 44
Q ss_pred HHHHHHHHHhhcCchhhhHHh
Q 003433 546 TYNSIIDAFGRSATTECTVDD 566 (820)
Q Consensus 546 ~~~~ll~~~~~~g~~~~a~~~ 566 (820)
.+..+..++...|+.++|+..
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhH
Confidence 666667777777777776553
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.45 E-value=0.00025 Score=58.60 Aligned_cols=68 Identities=16% Similarity=0.082 Sum_probs=47.1
Q ss_pred CchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhh
Q 003433 676 NQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQV 744 (820)
Q Consensus 676 ~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 744 (820)
|.+..+...+...+ ..|++++|+..|+++++++|.+ ...|..++.+|.+.|++++|.+.++++.+...
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDY-VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 34444444433333 4566666666677777777754 55689999999999999999999998876543
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.42 E-value=0.0014 Score=52.42 Aligned_cols=80 Identities=18% Similarity=0.177 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (820)
+.+..+...+...|++++|+..|++++... +.+..++..++.++.+.|++++|+..|+++.+..+ .+..++..+..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~ 85 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 345556666667777777777777776653 33344566667777777777777777777666532 24555665555
Q ss_pred HHHh
Q 003433 237 AYGR 240 (820)
Q Consensus 237 ~~~~ 240 (820)
++.+
T Consensus 86 ~~~~ 89 (91)
T 1na3_A 86 AKQK 89 (91)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.41 E-value=0.00067 Score=57.56 Aligned_cols=79 Identities=14% Similarity=0.011 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003433 174 KAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNS 253 (820)
Q Consensus 174 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 253 (820)
+|++.|+.+++.. +.+..++..++.+|...|++++|+..|+++++..+ .+..+|..+..+|...|++++|+..|++
T Consensus 3 ~a~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQG---TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTT---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4667777777663 44456777788888888888888888888877643 3577778888888888888888888887
Q ss_pred HHh
Q 003433 254 MKR 256 (820)
Q Consensus 254 m~~ 256 (820)
..+
T Consensus 79 al~ 81 (115)
T 2kat_A 79 GLA 81 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 208
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.24 E-value=0.018 Score=56.38 Aligned_cols=86 Identities=9% Similarity=0.057 Sum_probs=54.3
Q ss_pred hhhHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhcc-----CCHHHHHHHHHHHhhcCCch-hHHHHHHHhcc-c-c
Q 003433 623 RQEILCILGVFQKMHKLKIKPN---VVTFSAILNACSRC-----NSFEDASMLLEELRLFDNQV-YGVAHGLLMGY-R-D 691 (820)
Q Consensus 623 ~~~~~~Al~~~~~m~~~~~~Pd---~~~~~~ll~a~~~~-----g~~~eA~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~ 691 (820)
.....+|..++++.++ ++|+ ...|..|+..|.+. |+.++|+++|+++++++|+. ..+...+...+ . .
T Consensus 176 l~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 176 PDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTT
T ss_pred HHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Confidence 3456667777777777 6666 44577777777774 77777777777777777643 33333332222 2 4
Q ss_pred chHHHHHHHHHHHhhcCCC
Q 003433 692 NIWVQALSLFDEVKLMDSS 710 (820)
Q Consensus 692 ~~~~~A~~~~~~~~~~~~~ 710 (820)
++.++|...+++++..+|.
T Consensus 254 gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHcCCCC
Confidence 6667777777777766664
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.16 E-value=0.0016 Score=69.63 Aligned_cols=91 Identities=7% Similarity=0.054 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHH---CCCCC---C-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhccccchHHHH
Q 003433 625 EILCILGVFQKMHK---LKIKP---N-VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQA 697 (820)
Q Consensus 625 ~~~~Al~~~~~m~~---~~~~P---d-~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 697 (820)
++++|+.++++.++ .-+.| + ..+++.|+.+|...|++++|..++++++++
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i----------------------- 369 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP----------------------- 369 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH-----------------------
Confidence 56778888877764 11233 3 456999999999999999999999887621
Q ss_pred HHHHHHHhh-cCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhh
Q 003433 698 LSLFDEVKL-MDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (820)
Q Consensus 698 ~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (820)
+++.+= ..| +....|+.|+.+|..+|++++|+.+++++.+.
T Consensus 370 ---~~~~lG~~Hp-~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 370 ---YSKHYPVYSL-NVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp ---HHHHSCSSCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---HHHHcCCCCh-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 122211 122 23556999999999999999999999888654
No 210
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.14 E-value=0.0018 Score=53.32 Aligned_cols=64 Identities=16% Similarity=0.091 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 473 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
+...+..+...|.+.|++++|+..|+++++.++. +...|..+..+|...|++++|++.|++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556666666666666677777666666665433 455666666667777777777776666654
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.12 E-value=0.015 Score=59.39 Aligned_cols=64 Identities=9% Similarity=0.037 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 003433 262 NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHR 328 (820)
Q Consensus 262 ~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 328 (820)
+..+|..+...+...| ++++|...+++++..+ |+...|..+...+.-.|++++|.+.|++....
T Consensus 276 ~a~~~~alal~~l~~g-d~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKG-KTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4444444444343344 5555555555555542 44444444555555555555555555555553
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.07 E-value=0.00096 Score=54.65 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=34.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCchhH-HHHHHHhcc-ccchHHHHHHHHHHHhhcCCCc
Q 003433 651 ILNACSRCNSFEDASMLLEELRLFDNQVYG-VAHGLLMGY-RDNIWVQALSLFDEVKLMDSST 711 (820)
Q Consensus 651 ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~ 711 (820)
.+..+.+.|++++|.+.|+++++.+|.+.. +...+...+ ..|++++|+..|+++++++|++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 344555666666666666666666665554 444433333 3556666666666666666644
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.97 E-value=0.0022 Score=68.50 Aligned_cols=89 Identities=7% Similarity=-0.065 Sum_probs=63.9
Q ss_pred cCCCHHHHHHHHHHHHHc-----ccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C--CCCCHHHHHHHH
Q 003433 168 NRGEWSKAIQCFAFAVKR-----EERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE-----G--YGNTVYAFSALI 235 (820)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~li 235 (820)
..|++++|+.++++++.. +...+....+++.|+.+|..+|++++|+.++++++.. | .+....+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457788888888887763 3334445667788888888888888888888887642 2 112345677888
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 003433 236 SAYGRSGYCQEAISVFNSMKR 256 (820)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~ 256 (820)
..|...|++++|+.+|++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888888888888887654
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.97 E-value=0.001 Score=54.53 Aligned_cols=80 Identities=9% Similarity=0.128 Sum_probs=65.5
Q ss_pred hhhHHHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhccccchHHHHHHH
Q 003433 623 RQEILCILGVFQKMHKLKIKP-NVV-TFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSL 700 (820)
Q Consensus 623 ~~~~~~Al~~~~~m~~~~~~P-d~~-~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 700 (820)
.+++++|+..|++.++ ..| +.. .+..++.+|...|++++|.+.|+++++.+|.+..+... +.+.+|...
T Consensus 13 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------~~~~~a~~~ 83 (99)
T 2kc7_A 13 QGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------KMVMDILNF 83 (99)
T ss_dssp HTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-------HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-------HHHHHHHHH
Confidence 3578899999999988 456 456 88899999999999999999999999999987665422 467888888
Q ss_pred HHHHhhcCCCc
Q 003433 701 FDEVKLMDSST 711 (820)
Q Consensus 701 ~~~~~~~~~~~ 711 (820)
|+++.+.+|.+
T Consensus 84 ~~~~~~~~p~~ 94 (99)
T 2kc7_A 84 YNKDMYNQLEH 94 (99)
T ss_dssp HCCTTHHHHCC
T ss_pred HHHHhccCccc
Confidence 88888777644
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.83 E-value=0.0044 Score=66.25 Aligned_cols=94 Identities=11% Similarity=0.015 Sum_probs=53.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHc-----ccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C--CCCCHH
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKR-----EERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE-----G--YGNTVY 229 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~ 229 (820)
.+..+.+.|++++|++++++++.. +...+....+++.++.+|...|++++|+.++++++.. | .+....
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 344455666777777777666642 2222333455666666666667777666666665431 1 111234
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 003433 230 AFSALISAYGRSGYCQEAISVFNSMK 255 (820)
Q Consensus 230 ~~~~li~~~~~~g~~~~A~~~~~~m~ 255 (820)
+++.|...|...|++++|+.+|++..
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 56666666666666666666666554
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.81 E-value=0.0033 Score=67.22 Aligned_cols=91 Identities=9% Similarity=-0.087 Sum_probs=61.4
Q ss_pred HHHHhccCCHHHHHHHHHHHhhc-----CCchh---HHHHHHHhcc-ccchHHHHHHHHHHHhhc-----CCCc--chhH
Q 003433 652 LNACSRCNSFEDASMLLEELRLF-----DNQVY---GVAHGLLMGY-RDNIWVQALSLFDEVKLM-----DSST--ASAF 715 (820)
Q Consensus 652 l~a~~~~g~~~eA~~~~~~~~~~-----~~~~~---~~~~~~~~~~-~~~~~~~A~~~~~~~~~~-----~~~~--~~~~ 715 (820)
+..+.+.|++++|..+++++++. .+++. .+.+++...| .+|+|++|+.++++++++ ++++ ....
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455667888888888777643 22222 2233344344 467788888888877652 3322 3556
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHhhhh
Q 003433 716 YNALTDMLWHFGQKRGAQLVVLEGKRR 742 (820)
Q Consensus 716 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (820)
|+.|+.+|..+|++++|+.+++++.+.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 899999999999999999999887654
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.58 E-value=0.0086 Score=52.58 Aligned_cols=83 Identities=17% Similarity=0.064 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHhhcC-C-chhHHHHHHHhcc-ccchHHHHHHHH
Q 003433 628 CILGVFQKMHKLKIKPNVVTFSAILNACSRCN---SFEDASMLLEELRLFD-N-QVYGVAHGLLMGY-RDNIWVQALSLF 701 (820)
Q Consensus 628 ~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g---~~~eA~~~~~~~~~~~-~-~~~~~~~~~~~~~-~~~~~~~A~~~~ 701 (820)
.+.+.|.+....|. ++..+...+..++.+.+ ++++|+.+|+++.+.+ | ..-..++.+..++ +.+++++|++++
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34556666655554 57777667888888887 6668888888888766 4 3344445554443 677888888888
Q ss_pred HHHhhcCCCc
Q 003433 702 DEVKLMDSST 711 (820)
Q Consensus 702 ~~~~~~~~~~ 711 (820)
+++++++|++
T Consensus 95 ~~lL~ieP~n 104 (152)
T 1pc2_A 95 RGLLQTEPQN 104 (152)
T ss_dssp HHHHHHCTTC
T ss_pred HHHHhcCCCC
Confidence 8888888854
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.49 E-value=0.036 Score=56.64 Aligned_cols=73 Identities=15% Similarity=0.049 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003433 471 SPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTY 547 (820)
Q Consensus 471 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 547 (820)
+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.|+++.. +.|...||
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence 4456666666655655677777777777776654 5666666666666777777777777776666 35555544
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.47 E-value=0.17 Score=59.24 Aligned_cols=76 Identities=13% Similarity=0.173 Sum_probs=46.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHc
Q 003433 303 NSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKA 382 (820)
Q Consensus 303 ~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 382 (820)
..++..+.+.|..++|.++.+.-. .-.....+.|++++|+++.+.+. +...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~~------~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDES------AEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTCC------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhhC------cHhHHHHHHHHHHHc
Confidence 555666666777777665542111 11334456677777777765442 556777777777777
Q ss_pred CCHHHHHHHHHHHH
Q 003433 383 GRLDDALNMFSEMK 396 (820)
Q Consensus 383 g~~~~A~~~~~~m~ 396 (820)
|+++.|.+.|.++.
T Consensus 695 ~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 695 FNFKLAIEAFTNAH 708 (814)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcc
Confidence 77777777776553
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.45 E-value=0.0073 Score=59.09 Aligned_cols=86 Identities=16% Similarity=0.028 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHhhcCCch-hH-HHHHHHhccc------cchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhc-CchH
Q 003433 660 SFEDASMLLEELRLFDNQV-YG-VAHGLLMGYR------DNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHF-GQKR 730 (820)
Q Consensus 660 ~~~eA~~~~~~~~~~~~~~-~~-~~~~~~~~~~------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~ 730 (820)
...+|..++++++++||.. .+ ....+..-|. .|+.++|+++|+++++++|+.+...+..+++.|++. |+++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 5678899999999999983 22 2222222232 489999999999999999976678899999999985 9999
Q ss_pred HHHHHHHHhhhhhhh
Q 003433 731 GAQLVVLEGKRRQVW 745 (820)
Q Consensus 731 ~A~~~~~~~~~~~~~ 745 (820)
+|.+++++++.-...
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 999999998876554
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.41 E-value=0.0061 Score=49.14 Aligned_cols=52 Identities=6% Similarity=-0.146 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhh
Q 003433 693 IWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVW 745 (820)
Q Consensus 693 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 745 (820)
..++|..+++++++++|++ +.....||.++++.|++++|+.+|+++.+....
T Consensus 24 ~~~~A~~~l~~AL~~dp~~-~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 24 MTDEVSLLLEQALQLEPYN-EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHCcCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3577888888888888855 566888888888888888888888887766543
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.41 E-value=0.0095 Score=52.32 Aligned_cols=86 Identities=7% Similarity=-0.030 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-c---cchHHHHHHHHHHHhhcC-CCcchhHHHHHHHHHhhcCchHHHH
Q 003433 659 NSFEDASMLLEELRLFDNQVYGVAHGLLMGY-R---DNIWVQALSLFDEVKLMD-SSTASAFYNALTDMLWHFGQKRGAQ 733 (820)
Q Consensus 659 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 733 (820)
+.+..+++.|.+....++.+..+..++.+.+ + ..+.++|+.+++++++.+ |......+..|+-.|++.|++++|+
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 3456677778877777777777777776655 2 447889999999999998 6455777888999999999999999
Q ss_pred HHHHHhhhhhh
Q 003433 734 LVVLEGKRRQV 744 (820)
Q Consensus 734 ~~~~~~~~~~~ 744 (820)
++++.+++...
T Consensus 92 ~y~~~lL~ieP 102 (152)
T 1pc2_A 92 KYVRGLLQTEP 102 (152)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHhcCC
Confidence 99999887765
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.96 E-value=0.055 Score=63.55 Aligned_cols=130 Identities=13% Similarity=0.139 Sum_probs=68.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003433 373 STMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQ 452 (820)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 452 (820)
..++..+.+.|..++|+++.+... .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 555555666666666665442110 1122344567777776664322 3566777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003433 453 GKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLL 532 (820)
Q Consensus 453 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 532 (820)
|+++.|.+.|.++.. |..+...|...|+.+...++.+.....|. ++.-..+|.+.|++++|+++|
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 777777777776532 23344444445555555555444444331 122233345555555555554
Q ss_pred HHH
Q 003433 533 DEM 535 (820)
Q Consensus 533 ~~m 535 (820)
.++
T Consensus 760 ~~~ 762 (814)
T 3mkq_A 760 IKS 762 (814)
T ss_dssp HHT
T ss_pred HHc
Confidence 443
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.84 E-value=0.07 Score=43.89 Aligned_cols=70 Identities=13% Similarity=0.055 Sum_probs=53.9
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccc----cCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003433 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREER----KNDQGKLASAMISILGRLGKVDLAKNIFETALNEGY 224 (820)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 224 (820)
+++.+..|...+.+.+++..|+..|+.+++.... ......++..++.++.+.|+++.|...++++++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 4667778889999999999999999988875321 123455778888888888888888888888887643
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.78 E-value=0.067 Score=42.89 Aligned_cols=63 Identities=24% Similarity=0.041 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003433 194 KLASAMISILGRLGK---VDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRY 257 (820)
Q Consensus 194 ~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 257 (820)
.++..++.++...++ .++|..+++++++.++. ++.++..+...+.+.|++++|+..|+++.+.
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444444443333 45566666665555432 4555555555566666666666666665543
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.22 E-value=0.12 Score=42.42 Aligned_cols=70 Identities=7% Similarity=-0.091 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhh
Q 003433 508 DVVLYSALIDALCKNGLVESAVSLLDEMTKEG------IRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (820)
Q Consensus 508 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (820)
+..-+..|+..+.+.|+++.|...|+++++.- -.+...++..|..++.+.|++++|+..++++++..|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 33444455666666666666666666655420 01233456666666666666666666666666655543
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.08 E-value=0.96 Score=40.66 Aligned_cols=97 Identities=14% Similarity=0.093 Sum_probs=44.1
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003433 310 SRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDAL 389 (820)
Q Consensus 310 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 389 (820)
...|+++.|.++.+.+ .+...|..|.+...+.|+++-|.+.|.+... +..+.-.|.-.|+.++-.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3445555555554433 1344555555555555555555555555442 223333444445554444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003433 390 NMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVC 427 (820)
Q Consensus 390 ~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~ 427 (820)
++-+.....|- ++.-...+.-.|+++++.++|
T Consensus 81 kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 81 KMQNIAQTRED------FGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHH
Confidence 44333333320 222233333445555555544
No 228
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.91 E-value=6.6 Score=45.39 Aligned_cols=20 Identities=20% Similarity=0.092 Sum_probs=9.7
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 003433 413 IYAKLGRFEEALLVCKEMES 432 (820)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~ 432 (820)
+|+..|+.....+++..+.+
T Consensus 569 AyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 569 AYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HTTTSCCHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHhcc
Confidence 44455555444445555443
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.91 E-value=0.46 Score=42.75 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=23.5
Q ss_pred HHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003433 344 ICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEM 395 (820)
Q Consensus 344 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 395 (820)
..+.|+++.|.++.+++. +...|..|.+.....|+++-|.+.|.+.
T Consensus 15 AL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344555555555544431 4445555555555555555555555443
No 230
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.86 E-value=4.9 Score=42.73 Aligned_cols=60 Identities=7% Similarity=0.090 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhcCchHHHHHHHHHhhhhhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHH
Q 003433 715 FYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAWLLNIH 776 (820)
Q Consensus 715 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~~w~~~~~ 776 (820)
.+..|+..+.- ..++++.++..|...|.-.+-.-...|-|++....+....+..|-.++.
T Consensus 361 ~l~~la~lL~l--~~~evE~~ls~mI~~g~i~akIDq~~giV~F~~~~~~~~~l~~W~~~i~ 420 (445)
T 4b4t_P 361 TLLRLNELLDL--TESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVD 420 (445)
T ss_dssp EHHHHHHHHTS--CHHHHHHHHHHHHHHTSSCCEEETTTTEEEC------------------
T ss_pred eHHHHHHHhCc--CHHHHHHHHHHHHHCCCEEEEEcCCCCEEEECCCCChHHHHHHHHHHHH
Confidence 36667777654 4678888888887666543322222344554444455566778865554
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.78 E-value=0.083 Score=44.51 Aligned_cols=83 Identities=6% Similarity=-0.071 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHhcc----ccchHHHHHHHHHHHhhcC-CCcchhHHHHHHHHHhhcCchHHHHHHH
Q 003433 662 EDASMLLEELRLFDNQVYGVAHGLLMGY----RDNIWVQALSLFDEVKLMD-SSTASAFYNALTDMLWHFGQKRGAQLVV 736 (820)
Q Consensus 662 ~eA~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 736 (820)
..+++.|.+....++.+..+..++.+++ ...+..+++.+++.+++.+ |.........|+-.+++.|+|++|++++
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3344444444333333334444443333 1234445666666666655 4334555666666777777777777776
Q ss_pred HHhhhhhh
Q 003433 737 LEGKRRQV 744 (820)
Q Consensus 737 ~~~~~~~~ 744 (820)
+..++...
T Consensus 98 ~~lL~~eP 105 (126)
T 1nzn_A 98 RGLLQTEP 105 (126)
T ss_dssp HHHHHHCT
T ss_pred HHHHHhCC
Confidence 66655443
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.60 E-value=0.4 Score=41.40 Aligned_cols=117 Identities=13% Similarity=0.141 Sum_probs=78.1
Q ss_pred CCChhhHHHHHHHHHcCCCH------HHHHHHHHHHHHcccccC--C---hhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003433 153 LCGADDYTFLLRELGNRGEW------SKAIQCFAFAVKREERKN--D---QGKLASAMISILGRLGKVDLAKNIFETALN 221 (820)
Q Consensus 153 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 221 (820)
+.++|.|-..+..+-+.|+. ++.+++|+++...-+... . ...++...+. +...++.++|+++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHH
Confidence 45688888888888888988 889999999987532110 0 1111211121 2344788888888888876
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003433 222 EGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDA 272 (820)
Q Consensus 222 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 272 (820)
..-.- ..+|......-.+.|++..|.+++.+.+..+.+| .......|..
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~n 137 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRN 137 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHh
Confidence 53332 7778877788888888888888888888776664 3334444443
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.74 E-value=0.32 Score=40.91 Aligned_cols=82 Identities=18% Similarity=0.072 Sum_probs=58.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH---HHHHHHHHhhcC-C-chhHHHHHHHhcc-ccchHHHHHHHHH
Q 003433 629 ILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFED---ASMLLEELRLFD-N-QVYGVAHGLLMGY-RDNIWVQALSLFD 702 (820)
Q Consensus 629 Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~~~e---A~~~~~~~~~~~-~-~~~~~~~~~~~~~-~~~~~~~A~~~~~ 702 (820)
+.+.|.+....|. ++..+--.+..++.+.....+ ++.+++++...+ | .....++.+..++ +.|++.+|+..++
T Consensus 20 ~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 20 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3344554444343 566666678888888887766 999999988765 3 3344444444444 7899999999999
Q ss_pred HHhhcCCCc
Q 003433 703 EVKLMDSST 711 (820)
Q Consensus 703 ~~~~~~~~~ 711 (820)
.+++.+|.+
T Consensus 99 ~lL~~eP~n 107 (126)
T 1nzn_A 99 GLLQTEPQN 107 (126)
T ss_dssp HHHHHCTTC
T ss_pred HHHHhCCCC
Confidence 999999965
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.71 E-value=2.8 Score=35.38 Aligned_cols=138 Identities=11% Similarity=0.108 Sum_probs=66.1
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003433 310 SRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDAL 389 (820)
Q Consensus 310 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 389 (820)
.-.|.+++..++..+..+. .+..-||-.|--....-+-+...++++.+-+. .|.. ..|++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHH
Confidence 3456666666666666653 24455555554444444555555555544332 1211 122222222
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003433 390 NMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC 469 (820)
Q Consensus 390 ~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 469 (820)
..+-.+ ..+..-+..-++.+...|+-|+-.+++..+... .++++.....+..+|.+.|+..+|.+++.+.-+.|
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 222221 112222333444555556666555555554322 24555555556666666666666666666655555
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.43 E-value=6.1 Score=45.63 Aligned_cols=351 Identities=12% Similarity=0.050 Sum_probs=201.0
Q ss_pred hHHHHHHHHHcCCCHHHH-HH-HHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHH
Q 003433 158 DYTFLLRELGNRGEWSKA-IQ-CFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEG--YGNTVYAFSA 233 (820)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A-~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ 233 (820)
....+.+++.+.|--.+. +. ...|.-+. .+....-....-+....|+.++++.+++..+..+ -.+.+..-..
T Consensus 341 ~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~----~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAl 416 (963)
T 4ady_A 341 TAVSVANGFMHAGTTDNSFIKANLPWLGKA----QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSL 416 (963)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHCHHHHHHC----CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhhcchhhhhcc----chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHH
Confidence 345578889888854333 22 22465543 2333444455556778899999999999887532 1223344455
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC-------CCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHH--HH-
Q 003433 234 LISAYGRSGYCQEAISVFNSMKRYNL-------KPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRIT--FN- 303 (820)
Q Consensus 234 li~~~~~~g~~~~A~~~~~~m~~~~~-------~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~--~~- 303 (820)
+.-+....|..+++++++.......- .+.+..-.++.-+++-.|-.-+++.+.+..++... +..+ ..
T Consensus 417 laLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd---~~~~~~~Aa 493 (963)
T 4ady_A 417 YGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND---SATSGEAAA 493 (963)
T ss_dssp HHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHH
Confidence 55667777777788888877664211 01122233343344434422367778887777642 2222 22
Q ss_pred -HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHchhCCCCCCHH-HHH---HHH
Q 003433 304 -SLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAI--CKGAQMDLAFEIMAEMPAKNISPNVV-TYS---TMI 376 (820)
Q Consensus 304 -~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~---~li 376 (820)
+|...+...|+-+....++..+.+. .+..+...++-++ .-.|+.+.+..+++.+... .|.. -|. ++.
T Consensus 494 lALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alg 567 (963)
T 4ady_A 494 LGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIA 567 (963)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHH
T ss_pred HHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 3344456778888888888887764 2344444444444 4678888888888887764 2332 233 344
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-
Q 003433 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKY- 455 (820)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~- 455 (820)
-+|+..|+.....+++..+.... ..+......+.-++...|+.+.+.++++.+.+.+ .+.+.--.++.-+....|..
T Consensus 568 lAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~ 645 (963)
T 4ady_A 568 LAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGL 645 (963)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCC
T ss_pred HHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCc
Confidence 56788899888888999888752 2233333333334555677677777777666544 34444333444444444443
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--C-------CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCH
Q 003433 456 DEVRRMFEQMKADCVSPNLLTYSTLIDVYSKG--G-------LYKEAMQIFREFKQA-GLKADVVLYSALIDALCKNGLV 525 (820)
Q Consensus 456 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g-------~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~ 525 (820)
.++..++..+.. .+|..+-..-+.++... | ++...++.+...... .-.++...-..+..+....|.-
T Consensus 646 ~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~ 722 (963)
T 4ady_A 646 QSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGR 722 (963)
T ss_dssp HHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCC
Confidence 678888888875 34555544344343322 2 345555544444432 2223455556666777777654
Q ss_pred H
Q 003433 526 E 526 (820)
Q Consensus 526 ~ 526 (820)
.
T Consensus 723 n 723 (963)
T 4ady_A 723 N 723 (963)
T ss_dssp T
T ss_pred c
Confidence 3
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.11 E-value=2.5 Score=35.69 Aligned_cols=64 Identities=13% Similarity=0.080 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCC
Q 003433 300 ITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN 364 (820)
Q Consensus 300 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 364 (820)
..+...+..+..+|.-|+-.+++..+... .+++....-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33344444444555555555544443221 23344444445555555555555555554444444
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.93 E-value=1.6 Score=37.67 Aligned_cols=114 Identities=12% Similarity=0.131 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCHH----HHHHHHH---HHHhcCCHHHHHHHHHHHHH
Q 003433 436 RKDAVTYNALLGGYGKQGKY------DEVRRMFEQMKADCVSPNLL----TYSTLID---VYSKGGLYKEAMQIFREFKQ 502 (820)
Q Consensus 436 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~~----~~~~li~---~~~~~g~~~~A~~~~~~m~~ 502 (820)
+.|..+|-..+....+.|+. ++.+++|++.... ++|+.. .|--|-- .+...++.++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44566666666666666666 6777777776654 444321 1111111 11234788889999998876
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 503 AGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (820)
Q Consensus 503 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 552 (820)
.+-+- ...|......-.++|++..|.+++.+.+..+..| ...+.+.+.
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 53333 7778777888889999999999999998876553 334444333
No 238
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.63 E-value=1.4 Score=37.67 Aligned_cols=68 Identities=7% Similarity=-0.034 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHhccCCH---HHHHHHHHHHhhcCCc-hhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCC
Q 003433 642 KPNVVTFSAILNACSRCNSF---EDASMLLEELRLFDNQ-VYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDS 709 (820)
Q Consensus 642 ~Pd~~~~~~ll~a~~~~g~~---~eA~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~ 709 (820)
.|+..+--.+..++.++... .+++.+++++...+|. .-..++.+..++ +.|++.+|+++.+.+++.+|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 34544444455555555432 3445555554433331 112222222222 34444444444444444444
No 239
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=90.13 E-value=0.0073 Score=62.88 Aligned_cols=218 Identities=14% Similarity=0.208 Sum_probs=140.9
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003433 154 CGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSA 233 (820)
Q Consensus 154 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 233 (820)
.+|..|..++....+.|.+++-++.+..+.+.. . ...+=+.|+-+|++.+++.+-.+++. .||+.-...
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~-k---e~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~ 149 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-R---ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQ 149 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC-C---STTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-c---ccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHH
Confidence 356778888888889999998888876655442 1 12344678888998888776443321 245545566
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC--------------------CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Q 003433 234 LISAYGRSGYCQEAISVFNSMKRYN--------------------LKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN 293 (820)
Q Consensus 234 li~~~~~~g~~~~A~~~~~~m~~~~--------------------~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~ 293 (820)
+++-+...|.++.|.-+|..+.... -.-+..||-.+-.+|...+ ++.-|.-.--.++-.
T Consensus 150 VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~-EfrLAqicGLniIvh 228 (624)
T 3lvg_A 150 VGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGK-EFRLAQMCGLHIVVH 228 (624)
T ss_dssp HHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSC-TTTTTTHHHHHHHCC
T ss_pred HHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCch-HHHHHHHhcchhccc
Confidence 7777777777777777766543211 0235678888888888888 777665544444421
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCC------
Q 003433 294 GVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK-NIS------ 366 (820)
Q Consensus 294 g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-g~~------ 366 (820)
+| -...|+..|-..|.+++-+.+++..+... ......|+-|.-.|+|- +.++-.+.++..-.+ +++
T Consensus 229 ---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvirac 301 (624)
T 3lvg_A 229 ---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAA 301 (624)
T ss_dssp ---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHH
T ss_pred ---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHH
Confidence 11 22345666778888998888888876431 34677888888888876 445555555443322 111
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHH
Q 003433 367 PNVVTYSTMIDGYAKAGRLDDALN 390 (820)
Q Consensus 367 p~~~~~~~li~~~~~~g~~~~A~~ 390 (820)
-....|.-++-.|.+-.+++.|..
T Consensus 302 E~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 302 EQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhhHHHHHHHHhcchhHHHHHH
Confidence 123468888888888888887754
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.66 E-value=1.4 Score=49.88 Aligned_cols=129 Identities=14% Similarity=0.088 Sum_probs=74.3
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-------CCCCCCHH---
Q 003433 232 SALISAYGRSGY-CQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLR-------NGVQPDRI--- 300 (820)
Q Consensus 232 ~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~-------~g~~p~~~--- 300 (820)
..|+..+...|+ ++.|+.+|+++.+....-+......++..+...+.+--+|.+++.+.++ .-...+..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 444555555555 4678888888776432212222223333333322122345555544432 11111111
Q ss_pred -------HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHch
Q 003433 301 -------TFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMP 361 (820)
Q Consensus 301 -------~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 361 (820)
....-...|...|+++.|+.+-++.+... +.+-.+|..|..+|.+.|+++.|+-.+..+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 12222345667889999999988888763 4457788999999999999999998888875
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.33 E-value=3.3 Score=46.88 Aligned_cols=131 Identities=15% Similarity=0.139 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhC------CCCC-CHH
Q 003433 194 KLASAMISILGRLGK-VDLAKNIFETALNEGYGNTVYAFSALISAYGRSGY-CQEAISVFNSMKRY------NLKP-NLV 264 (820)
Q Consensus 194 ~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~------~~~p-~~~ 264 (820)
.+...++..+...|+ .+.|..+|+++.+..+..++.....++..+.+.++ --+|++++.+..+. ...+ +..
T Consensus 249 ~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 249 YLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 455677777777777 58899999999887543333333444544444432 22455555544321 1111 211
Q ss_pred ----------HHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 003433 265 ----------TYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMV 326 (820)
Q Consensus 265 ----------~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 326 (820)
..+.-..-+...| +++.|+++-++.+...+ -+-.+|..|..+|...|+++.|+-.+..+.
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~-~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRG-DYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhccC-cHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1111223355677 99999999999998633 368899999999999999999998887763
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.68 E-value=1.6 Score=36.89 Aligned_cols=68 Identities=7% Similarity=-0.034 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHhccCCH---HHHHHHHHHHhhcCCc-hhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCC
Q 003433 642 KPNVVTFSAILNACSRCNSF---EDASMLLEELRLFDNQ-VYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDS 709 (820)
Q Consensus 642 ~Pd~~~~~~ll~a~~~~g~~---~eA~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~ 709 (820)
.|...|--.+..++.+.... .+|+.+++++...++. .-..++.+..++ +.|++.+|+++.+.+++.+|
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 34444433455555555433 3455555555443331 122222222222 34444444444444444444
No 243
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=87.17 E-value=1.4e-05 Score=82.73 Aligned_cols=205 Identities=11% Similarity=0.122 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 334 IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSI 413 (820)
Q Consensus 334 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~ 413 (820)
..+|..|..++.+.+++.+|++.|-+.. |...|..+|.+..+.|.+++-+.++...++. ..+...=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHH
Confidence 4467777888777777777777664332 5566777888888888888888877666554 2333444677778
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003433 414 YAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEA 493 (820)
Q Consensus 414 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 493 (820)
|++.++..+-.+++ . .||..-...+.+-|...|.++.|.-+|..+.. |..|...+.+.|++..|
T Consensus 126 yAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHH
Confidence 88888765433322 1 35665666777778888888877777765432 33455566677777776
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhh
Q 003433 494 MQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGK 573 (820)
Q Consensus 494 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~ 573 (820)
.+.-++. .++.||-.+-.+|...+.+.-|...--.++-. +| -...|+.-|-..|.+++-+.+++.+++.
T Consensus 190 VdaArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 190 VDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 6543322 36778988889999999888776655555421 22 2334667788889999988888887754
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.02 E-value=8.4 Score=40.06 Aligned_cols=118 Identities=12% Similarity=0.054 Sum_probs=71.7
Q ss_pred cCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 003433 168 NRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKV-DLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQE 246 (820)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 246 (820)
..|+.+.|.+.+..++..-....-.. .. ...+ .....-+++.. ..+...++..+...|++++
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~~L~~-~~---------~~~w~~~~r~~l~~~~-------~~a~~~~~~~~l~~g~~~~ 189 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGPVLDD-LR---------DFQFVEPFATALVEDK-------VLAHTAKAEAEIACGRASA 189 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSSTTGG-GT---------TSTTHHHHHHHHHHHH-------HHHHHHHHHHHHHTTCHHH
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCCC-CC---------chhHHHHHHHHHHHHH-------HHHHHHHHHHHHHCCCHHH
Confidence 45788899999988887421111000 00 0111 11122222221 1244556777778888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 003433 247 AISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLR-----NGVQPDRITFNS 304 (820)
Q Consensus 247 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 304 (820)
|+..++.+.....- +...|..+|.++.+.| +..+|++.|+.+.+ .|+.|...+-..
T Consensus 190 a~~~l~~~~~~~P~-~E~~~~~lm~al~~~G-r~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 190 VIAELEALTFEHPY-REPLWTQLITAYYLSD-RQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 88887777654322 6777888888888888 78888888877653 478887766543
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.36 E-value=6.4 Score=40.95 Aligned_cols=71 Identities=13% Similarity=0.086 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 003433 478 STLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK-----EGIRPNVVTYNS 549 (820)
Q Consensus 478 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 549 (820)
..++..+...|+.++|...+..+....+ .+...|..++.+|.+.|+..+|++.|+++.+ .|+.|...+-..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3455666667777777777777666543 3666777777777777777777777776543 377777665433
No 246
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=86.14 E-value=45 Score=36.84 Aligned_cols=361 Identities=11% Similarity=0.033 Sum_probs=187.8
Q ss_pred cchHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHH
Q 003433 139 DVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFET 218 (820)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 218 (820)
...+...+...+.-+.....-..-+..+.+.++|...+.+|.. .+.+...-.....+....|+-.+|......
T Consensus 55 ~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~ 127 (618)
T 1qsa_A 55 AVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKE 127 (618)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-------CCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 3444445544432221112223366777788888887775542 234444555677778888998888887777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhH--HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC---
Q 003433 219 ALNEGYGNTVYAFSALISAYGRSGYCQE--AISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN--- 293 (820)
Q Consensus 219 ~~~~~~~~~~~~~~~li~~~~~~g~~~~--A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~--- 293 (820)
+-..|.. ....+..|+..+.+.|.+.. ...-++.+...| +...-..++..+ . . +.....+.+..+.+.
T Consensus 128 lW~~~~~-~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l-~-~-~~~~~a~~~~al~~~p~~ 200 (618)
T 1qsa_A 128 LWLTGKS-QPNACDKLFSVWRASGKQDPLAYLERIRLAMKAG---NTGLVTVLAGQM-P-A-DYQTIASAIISLANNPNT 200 (618)
T ss_dssp HHSCSSC-CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTC-C-G-GGHHHHHHHHHHHHCGGG
T ss_pred HHhCCCC-CcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhC-C-H-HHHHHHHHHHHHHhChHh
Confidence 7665533 45567788888887776544 333333333322 222222222211 0 0 111111111111111
Q ss_pred ------CCCCCHHHHHH---HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHc
Q 003433 294 ------GVQPDRITFNS---LLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNT----LLDAICKGAQMDLAFEIMAEM 360 (820)
Q Consensus 294 ------g~~p~~~~~~~---ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~----ll~~~~~~g~~~~A~~~~~~m 360 (820)
.+.++...-.. .+.-+.+ .+.+.|...+....+.. ..+...... ++..+...+...++...+...
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~ 278 (618)
T 1qsa_A 201 VLTFARTTGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDA 278 (618)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHH
T ss_pred HHHHHhccCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhc
Confidence 01222221111 1222223 37889999998886543 223333322 232333345356677777765
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003433 361 PAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAV 440 (820)
Q Consensus 361 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 440 (820)
.... .+.....-.+....+.|+++.|...|..|.... .......--+..++...|+.++|..+|..+.+. .
T Consensus 279 ~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~--- 349 (618)
T 1qsa_A 279 IMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R--- 349 (618)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C---
T ss_pred cccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---
Confidence 5443 233333344445567799999999998886532 123444455667778889999999999988741 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003433 441 TYNALLGGYGKQGKYDEVRRMFEQMKADCVSP---NLLT---YSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSA 514 (820)
Q Consensus 441 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 514 (820)
+|..++. ..+.|..-.. ......+ .... ...-+..+...|....|...+..+.+. .+......
T Consensus 350 ~fYg~lA-a~~Lg~~~~~-------~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~ 418 (618)
T 1qsa_A 350 GFYPMVA-AQRIGEEYEL-------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQ 418 (618)
T ss_dssp SHHHHHH-HHHTTCCCCC-------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHH
T ss_pred ChHHHHH-HHHcCCCCCC-------CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHH
Confidence 2333221 1222221000 0000000 1111 112344566788899998888887764 24444445
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 003433 515 LIDALCKNGLVESAVSLLDEM 535 (820)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m 535 (820)
+.......|..+.++....+.
T Consensus 419 la~~a~~~~~~~~~v~~~~~~ 439 (618)
T 1qsa_A 419 LARYAFNNQWWDLSVQATIAG 439 (618)
T ss_dssp HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCCChHHHHHHHHHH
Confidence 555566778888777655443
No 247
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.17 E-value=33 Score=34.34 Aligned_cols=168 Identities=14% Similarity=0.075 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----HHHHHCCCCCCHHHHHHHH
Q 003433 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMF----SEMKFLGIGLDRVSYNTVL 411 (820)
Q Consensus 336 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~~d~~~~~~li 411 (820)
.|.++..-|.+.+++++|++++..-. ..+.+.|+...|.++- +-+.+.++++|......|+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34455666778888888888765422 1234455555544443 4444556677777666666
Q ss_pred HHHHHcCCHH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 412 SIYAKLGRFE-EALLVCKEME----SSG--IRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVY 484 (820)
Q Consensus 412 ~~~~~~g~~~-~A~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 484 (820)
..+.....-+ .=..+.++++ +.| ..-|+.....+...|.+.+++.+|...|- . |..+...++..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHH
Confidence 6665544311 1112222221 112 23466777777888888888888877763 1 2233334554443333
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 485 SKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 485 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
...+...+ .|...-.+ +--|.-.++...|..+|+...+
T Consensus 178 ~~~~~~~e--------------~dlfiaRa-VL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 178 YKQDESHT--------------APLYCARA-VLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTSCGGG--------------HHHHHHHH-HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCcc--------------HHHHHHHH-HHHHHHhCCHHHHHHHHHHHHH
Confidence 33222111 11111122 2235566677777776666553
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.73 E-value=15 Score=44.45 Aligned_cols=129 Identities=12% Similarity=0.050 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003433 441 TYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNL----LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALI 516 (820)
Q Consensus 441 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 516 (820)
-|.-++..+.+.|.++.+.++-...++.....+. ..|..+...+...|++++|...+-.+..... -......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 3455555566666666666555554432211111 1355556666666666666666655554322 234444455
Q ss_pred HHHHHcCC------------HHHHHHHHHHHHH-C-CCCCCHHHHHHHHHHHhhcCchhhhHHh-HHHHh
Q 003433 517 DALCKNGL------------VESAVSLLDEMTK-E-GIRPNVVTYNSIIDAFGRSATTECTVDD-VERDL 571 (820)
Q Consensus 517 ~~~~~~g~------------~~~A~~~~~~m~~-~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~-~~~~l 571 (820)
..+|..|. .++..+++..-.+ . .+.....-|..|-.-....|++..|-.+ |+++.
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 54444443 3344444433211 1 1111112344444445677787776654 44433
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.36 E-value=34 Score=33.90 Aligned_cols=168 Identities=14% Similarity=0.102 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHH
Q 003433 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNM----FSEMKFLGIGLDRVSYNTVL 411 (820)
Q Consensus 336 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~~d~~~~~~li 411 (820)
.|.++..-|.+.+++++|++++..-.. .+.+.|+...|-++ ++...+.+++++......|+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 445566667778888888887654321 24455665555443 44445567777777777777
Q ss_pred HHHHHcCCHH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 412 SIYAKLGRFE-EALLVCKEME----SSG--IRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVY 484 (820)
Q Consensus 412 ~~~~~~g~~~-~A~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 484 (820)
..+.....-+ .=.+++++++ +.| ..-|+..+..+...|.+.|++.+|+..|-.- -.-|...+..++.-+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~----~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG----THDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS----CHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCccHHHHHHHHHHH
Confidence 6665533211 1122223322 222 1236777888888888888888888766521 011344444443333
Q ss_pred Hhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 485 SKG---GLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 485 ~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
... |...++--+.- . .+-.|.-.|+...|..+|+...+
T Consensus 176 ~~~~~~~~~~e~dlf~~--------------R-aVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 176 LCQVDDIEDSTVAEFFS--------------R-LVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHTTCCCHHHHHHHHH--------------H-HHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHhcCCCCcchHHHHHH--------------H-HHHHHHHhcCHHHHHHHHHHHHH
Confidence 332 43333221111 1 12235566777777777776653
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.63 E-value=15 Score=32.42 Aligned_cols=60 Identities=13% Similarity=0.060 Sum_probs=35.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccCC------hhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKND------QGKLASAMISILGRLGKVDLAKNIFETALN 221 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 221 (820)
-++.+...+.|+.|+-+.+.++......++ -..++..+++++...|++..|...|++++.
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 345566667777777766665543221111 112445667777777777777777777643
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.61 E-value=11 Score=31.89 Aligned_cols=67 Identities=10% Similarity=-0.028 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 471 SPNLLTYSTLIDVYSKGGL---YKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 471 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
.|+..+--.+..++.+..+ ..+++.+++++.+.+..-....+-.|.-++.+.|++++|.+..+.+++
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444444444444433 234555555554443211233334444455555555555555555554
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.36 E-value=23 Score=42.77 Aligned_cols=213 Identities=11% Similarity=0.053 Sum_probs=98.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003433 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 238 (820)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 238 (820)
...++..+...+.++.|.++..+... +......++.++..+|++++|...|.++.. |...+....
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-------~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~------- 879 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-------DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF------- 879 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC-------
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-------CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh-------
Confidence 33455556666666666655444321 112224466667777777777777766522 111000000
Q ss_pred HhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhC
Q 003433 239 GRSGYCQEAISVFNSMKRYN--LKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDR----ITFNSLLAVCSRG 312 (820)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~ 312 (820)
..... +..+.... ...-..-|..++..+-+.+ .++.+.++-...++....-+. ..|..+.+.+...
T Consensus 880 ---~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~-~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l 951 (1139)
T 4fhn_B 880 ---AVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEES-AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 951 (1139)
T ss_dssp ---SSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTS-CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ---hhhcc----cccccccccccccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhh
Confidence 00000 00011000 0112234555556666666 566666665555543211121 1355566666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH------------HHHHHHHHHchh-C-CCCCCHHHHHHHHHH
Q 003433 313 GLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQM------------DLAFEIMAEMPA-K-NISPNVVTYSTMIDG 378 (820)
Q Consensus 313 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~------------~~A~~~~~~m~~-~-g~~p~~~~~~~li~~ 378 (820)
|++++|...+-.+...... ......|+..+|..|+. ++..+++....+ . .+.....-|..|-.-
T Consensus 952 ~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ 1029 (1139)
T 4fhn_B 952 GKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSW 1029 (1139)
T ss_dssp CCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhh
Confidence 6666666666666554322 34445555555554433 333344432111 1 011112335666666
Q ss_pred HHHcCCHHHHHHH-HHHHH
Q 003433 379 YAKAGRLDDALNM-FSEMK 396 (820)
Q Consensus 379 ~~~~g~~~~A~~~-~~~m~ 396 (820)
+...|++.+|-.+ |+.+.
T Consensus 1030 ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 1030 RYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHTTSCHHHHHHHHHH
T ss_pred hhccCChHHHHHHHHHHHH
Confidence 6777887766554 44443
No 253
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.81 E-value=22 Score=30.44 Aligned_cols=67 Identities=10% Similarity=-0.028 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 471 SPNLLTYSTLIDVYSKGGL---YKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 471 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
.++..+--.+..++.+..+ ..+++.+++++.+.+..-.....-.|.-++.+.|++++|.+..+.+++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3555555555556665543 345566666665544322233334455566667777777776666666
No 254
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.69 E-value=52 Score=34.71 Aligned_cols=95 Identities=14% Similarity=0.156 Sum_probs=55.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HHH
Q 003433 443 NALLGGYGKQGKYDEVRRMFEQMKAD--CVSPN---LLTYSTLIDVYSKGGLYKEAMQIFREFKQ----AGLKAD--VVL 511 (820)
Q Consensus 443 ~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~--~~~ 511 (820)
..|...|...|++.+|..++..+... +.... ...+...+..|...+++..|..+++++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 44666677777777777777766421 11111 23455556677777777777777776532 111112 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 512 YSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
+...+..+...+++.+|.+.|.++.+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 55666667777777777777766653
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.00 E-value=54 Score=33.79 Aligned_cols=92 Identities=13% Similarity=-0.007 Sum_probs=47.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHchhC--CCCCCHHHHHH--
Q 003433 304 SLLAVCSRGGLWEAARNLFNEMVHRGIDQD-----IFTYNTLLDAICKGAQMDLAFEIMAEMPAK--NISPNVVTYST-- 374 (820)
Q Consensus 304 ~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~-----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~-- 374 (820)
-|+..|...|++.+|.+++.++.+.--..| ..++..-+.+|...+++.++...+...... .+.++......
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 456667777777777777766655310111 334455556666677777776666554321 11122221111
Q ss_pred --HHHHHH-HcCCHHHHHHHHHHH
Q 003433 375 --MIDGYA-KAGRLDDALNMFSEM 395 (820)
Q Consensus 375 --li~~~~-~~g~~~~A~~~~~~m 395 (820)
-.-.+. ..+++.+|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 112234 566677776666554
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=78.77 E-value=7 Score=34.50 Aligned_cols=85 Identities=11% Similarity=0.151 Sum_probs=47.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003433 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (820)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 237 (820)
.+..+...+...|+|.+|...|+++++....-+........+.. ...... ......++.+-.-+..+
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~----~ss~p~---------s~~~~~e~Elkykia~C 131 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGN----SASTPQ---------SQCLPSEIEVKYKLAEC 131 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------------------------------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccc----cCCCcc---------cccccchHHHHHHHHHH
Confidence 56678999999999999999999988753221111111111100 000000 00112345555567777
Q ss_pred HHhcCChhHHHHHHHHHH
Q 003433 238 YGRSGYCQEAISVFNSMK 255 (820)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~ 255 (820)
|.+.+++++|+.+++.+.
T Consensus 132 ~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 132 YTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHTTCHHHHHHHHHTSC
T ss_pred HHHHCCHHHHHHHHhcCC
Confidence 777777777777777764
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.83 E-value=29 Score=36.55 Aligned_cols=61 Identities=8% Similarity=0.006 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003433 195 LASAMISILGRLGKVDLAKNIFETALNE--GYGNTVYAFSALISAYGRSGYCQEAISVFNSMK 255 (820)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 255 (820)
+...++..|.+.|+++.|.+.|.++... +...-...+-.+|+.+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4556777777777777777777776543 222235566666666666777777666666654
No 258
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=72.68 E-value=26 Score=27.81 Aligned_cols=63 Identities=17% Similarity=0.132 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 489 LYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (820)
Q Consensus 489 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 552 (820)
+.-+..+-++.+...++.|++....+.+.+|-+.+++.-|+++|+-.+.. ..+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 44566666777777777788888888888888888888888888777653 2333345555554
No 259
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=70.59 E-value=1e+02 Score=31.75 Aligned_cols=165 Identities=8% Similarity=0.025 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhCC-CCC---CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHH---
Q 003433 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKN-ISP---NVVTYSTMIDGYAKA-GRLDDALNMFSEMKFLGIGLDRVSY--- 407 (820)
Q Consensus 336 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~p---~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~d~~~~--- 407 (820)
....|...|.+.|+.++..+++......= .-+ .......+++.+... +..+.-.++..+..+.. .-+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 34456666777777777666666554210 000 122344555555443 23333334443333210 0011122
Q ss_pred ---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHH
Q 003433 408 ---NTVLSIYAKLGRFEEALLVCKEMESSGIRKD-----AVTYNALLGGYGKQGKYDEVRRMFEQMKAD--CVSPNLLTY 477 (820)
Q Consensus 408 ---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~ 477 (820)
..|+..|...|++.+|.+++.++.+.=-..| ..+|..-+.+|...+++.++...+...... .+.++...-
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 3567788888888888888777754211111 234555567788888888888888776432 122333322
Q ss_pred HHH----HHHHH-hcCCHHHHHHHHHHHH
Q 003433 478 STL----IDVYS-KGGLYKEAMQIFREFK 501 (820)
Q Consensus 478 ~~l----i~~~~-~~g~~~~A~~~~~~m~ 501 (820)
..+ ...+. ..+++.+|...|-+..
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 211 23345 6788888887776654
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.27 E-value=31 Score=36.32 Aligned_cols=100 Identities=9% Similarity=-0.073 Sum_probs=68.3
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHH--
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE---GYGNTVYA-- 230 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~-- 230 (820)
.+....+...|.+.|++++|.+.|.++.........-..++-.+++++...+++..+...+.++... +..++...
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 3456779999999999999999999998754444444567788999999999999999999988542 22222211
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 003433 231 FSALISAYGRSGYCQEAISVFNSMK 255 (820)
Q Consensus 231 ~~~li~~~~~~g~~~~A~~~~~~m~ 255 (820)
...-+..+...+++.+|...|-+..
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHh
Confidence 1111222334566666666665543
No 261
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=70.26 E-value=88 Score=30.94 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003433 332 QDIFTYNTLLDAICKGAQMDLAFEIMA 358 (820)
Q Consensus 332 ~~~~~~~~ll~~~~~~g~~~~A~~~~~ 358 (820)
.|......+...|.+.|++.+|...|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 366777777777777788777777664
No 262
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=70.04 E-value=19 Score=28.55 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003433 422 EALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKA 467 (820)
Q Consensus 422 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 467 (820)
+..+-++.+...++.|++.+..+.+.+|.+.+++..|.++|+-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3333444444444445555555555555555555555555554443
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=68.01 E-value=1e+02 Score=30.79 Aligned_cols=133 Identities=12% Similarity=0.086 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHH
Q 003433 406 SYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRM----FEQMKADCVSPNLLTYSTLI 481 (820)
Q Consensus 406 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~~~~~li 481 (820)
+|.++..-|.+.+++++|++++..-. ..+.+.|+...|-++ ++-..+.++++|......|+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34455666777777777777654321 122333443333322 23333445556666666666
Q ss_pred HHHHhcCCHH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 482 DVYSKGGLYK-EAMQIFREFK----QAG--LKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAF 554 (820)
Q Consensus 482 ~~~~~~g~~~-~A~~~~~~m~----~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 554 (820)
..+.....-+ .=.++.++++ +.| ..-|......+...|.+.|++.+|...|- . |-.+...++..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHH
Confidence 6555443211 1122222222 112 33477888888899999999999888773 2 3333346665555444
Q ss_pred hhc
Q 003433 555 GRS 557 (820)
Q Consensus 555 ~~~ 557 (820)
...
T Consensus 178 ~~~ 180 (336)
T 3lpz_A 178 YKQ 180 (336)
T ss_dssp HHT
T ss_pred HHh
Confidence 433
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=66.49 E-value=47 Score=26.30 Aligned_cols=78 Identities=9% Similarity=0.072 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003433 314 LWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFS 393 (820)
Q Consensus 314 ~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 393 (820)
..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+- .||...|-+|-. .+.|..+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45556666555555432 22222223344556666666666665544 456666665543 35566666666665
Q ss_pred HHHHCC
Q 003433 394 EMKFLG 399 (820)
Q Consensus 394 ~m~~~~ 399 (820)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 555554
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=65.48 E-value=99 Score=29.71 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=17.7
Q ss_pred hccCCHHHHHHHHHHHhhcCCchhH
Q 003433 656 SRCNSFEDASMLLEELRLFDNQVYG 680 (820)
Q Consensus 656 ~~~g~~~eA~~~~~~~~~~~~~~~~ 680 (820)
...|+.++|..+-..+.+.-|...|
T Consensus 111 ~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 111 MVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred hhcCCHHHHHHHHHHHHhcCcccCC
Confidence 3569999999988888765544433
No 266
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=64.84 E-value=83 Score=28.63 Aligned_cols=140 Identities=10% Similarity=0.032 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 403 DRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLID 482 (820)
Q Consensus 403 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 482 (820)
|...-...+.++.+.+.. ++...+..+.. .++..+-...+.++.+.++.+ +...+..+.. .++...-...+.
T Consensus 63 ~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 134 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAF 134 (211)
T ss_dssp CHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHH
Confidence 444444444444444442 22222323322 345555555555555555532 3333333332 345555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC
Q 003433 483 VYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSA 558 (820)
Q Consensus 483 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 558 (820)
++.+.|.. ++...+..+.+ .++..+-...+.++.+.|. .++...+.++.+. ++..+-...+.++.+.+
T Consensus 135 aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 135 ALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC--
T ss_pred HHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcC
Confidence 55555543 33444444443 2455555566666666665 4555556665542 35555555555554433
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=64.59 E-value=41 Score=28.35 Aligned_cols=63 Identities=17% Similarity=0.132 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 489 LYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (820)
Q Consensus 489 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 552 (820)
+.-+..+-++.+...++.|++....+.+.+|-+.+++.-|+++|+-.+.. ..+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 34456666777777778888888888888888888888888888887754 3334445666554
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=64.14 E-value=24 Score=33.89 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=28.8
Q ss_pred HHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003433 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE 222 (820)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 222 (820)
+.+.|++++|++.....++.. |.+...-..++..||-.|+++.|.+-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~---P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS---PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 444555555555555555542 344445555555555555555555555555443
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=63.77 E-value=45 Score=26.35 Aligned_cols=78 Identities=10% Similarity=0.026 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003433 314 LWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFS 393 (820)
Q Consensus 314 ~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 393 (820)
..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+- .||...|-+|-. .+.|..+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45666666666655542 22222233444566677777776665544 467766666543 46666666666666
Q ss_pred HHHHCC
Q 003433 394 EMKFLG 399 (820)
Q Consensus 394 ~m~~~~ 399 (820)
++...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 666555
No 270
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=57.26 E-value=45 Score=26.36 Aligned_cols=50 Identities=14% Similarity=0.158 Sum_probs=21.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003433 413 IYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKAD 468 (820)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 468 (820)
.+.+.|++++|..+.+.+. .||...|.+|.. .+.|..+++..-+.++..+
T Consensus 49 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 3344555555544443322 344444444322 2344444444444444333
No 271
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=57.08 E-value=69 Score=27.00 Aligned_cols=46 Identities=9% Similarity=0.105 Sum_probs=26.2
Q ss_pred HHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 352 LAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKF 397 (820)
Q Consensus 352 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 397 (820)
+..+-++.+...++.|+.....+.+.+|.+.+++.-|+.+|+-.+.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444445555555556666666666666666666666666655543
No 272
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=54.30 E-value=76 Score=27.93 Aligned_cols=32 Identities=16% Similarity=0.096 Sum_probs=27.0
Q ss_pred CCCcchhHHHHHHHHHhhcCchHHHHHHHHHh
Q 003433 708 DSSTASAFYNALTDMLWHFGQKRGAQLVVLEG 739 (820)
Q Consensus 708 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 739 (820)
||.+..-+|+.+++++-+.|..+||+.++...
T Consensus 109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 45565678999999999999999999998654
No 273
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=54.29 E-value=44 Score=26.41 Aligned_cols=50 Identities=20% Similarity=0.172 Sum_probs=22.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003433 413 IYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKAD 468 (820)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 468 (820)
.+.+.|++++|..+.+.+. .||...|.+|. -.+.|..+++..-+.++..+
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTC
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHHHhC
Confidence 3444555555554433322 34555544433 23445555554444444443
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=53.54 E-value=95 Score=28.30 Aligned_cols=53 Identities=19% Similarity=0.210 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003433 420 FEEALLVCKEMESSGIRKD-AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP 472 (820)
Q Consensus 420 ~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 472 (820)
..++.++|..|...|+-.. ..-|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4555666666655444332 3445555555556666666666666655554444
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=53.45 E-value=99 Score=28.18 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=38.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003433 487 GGLYKEAMQIFREFKQAGLKA-DVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN 543 (820)
Q Consensus 487 ~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 543 (820)
.++..++..+|..|...|+-- -...|......+...|++++|.++|+.-++.+-+|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 344667777777777665532 345666677777777888888888887777766664
No 276
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=51.29 E-value=88 Score=30.90 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhh
Q 003433 648 FSAILNACSRCNSFEDASMLLEELRL 673 (820)
Q Consensus 648 ~~~ll~a~~~~g~~~eA~~~~~~~~~ 673 (820)
...++.-|...|+.+||.+.++++..
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~ 194 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEV 194 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 46788889899999999999988863
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=50.87 E-value=29 Score=30.11 Aligned_cols=50 Identities=20% Similarity=0.147 Sum_probs=37.6
Q ss_pred HHHHHHHHhhcCCC-cchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhhh
Q 003433 697 ALSLFDEVKLMDSS-TASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWE 746 (820)
Q Consensus 697 A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 746 (820)
+..+|.-|...+-. .-+.+|...+..|...|++.+|.++++.+.+++..+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45555555443221 236789999999999999999999999999887655
No 278
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=44.44 E-value=1.4e+02 Score=30.22 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHH
Q 003433 477 YSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGL--VESAVSLLDEMTKEGIRPNVVT 546 (820)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~ 546 (820)
.+.++.=|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+...+++..+...|+-+....
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 466777888888999999988888532111 23344555555554433 3556777777777665544333
No 279
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=43.72 E-value=1.8e+02 Score=27.39 Aligned_cols=91 Identities=11% Similarity=0.112 Sum_probs=55.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccCC----hhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKND----QGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 237 (820)
-+..+....+|++|+++.++..+.-..... ........+..-.....-..+..+.+.+.. ..+.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 566788899999999999877653211111 111223334444444444455555555532 3355566677788
Q ss_pred HHhcCChhHHHHHHHHHH
Q 003433 238 YGRSGYCQEAISVFNSMK 255 (820)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~ 255 (820)
+.+.|+-++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 888888888888887654
No 280
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=41.15 E-value=46 Score=30.96 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhcCCC-cchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhhh
Q 003433 696 QALSLFDEVKLMDSS-TASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWE 746 (820)
Q Consensus 696 ~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 746 (820)
++..+|.-|...+-. .-+.+|...+..|...|++.+|.+++..+.+++..+
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 455566666543321 236789999999999999999999999999887655
No 281
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=39.24 E-value=1.8e+02 Score=25.09 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=22.4
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003433 423 ALLVCKEMESSGIRKD-AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP 472 (820)
Q Consensus 423 A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 472 (820)
+.++|..|...|+-.. ..-|......+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4444444444443222 2334444444444555555555555444443333
No 282
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=37.79 E-value=6.9 Score=42.88 Aligned_cols=11 Identities=9% Similarity=0.021 Sum_probs=4.8
Q ss_pred HHHHHHhhcCC
Q 003433 699 SLFDEVKLMDS 709 (820)
Q Consensus 699 ~~~~~~~~~~~ 709 (820)
.++.+++..+|
T Consensus 495 ~li~~cl~~dP 505 (535)
T 2h8h_A 495 DLMCQCWRKEP 505 (535)
T ss_dssp HHHHHHTCSSG
T ss_pred HHHHHHcCCCh
Confidence 34444444444
No 283
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=37.07 E-value=12 Score=26.98 Aligned_cols=8 Identities=25% Similarity=0.077 Sum_probs=4.0
Q ss_pred CCCCCCCC
Q 003433 1 MASTPPHC 8 (820)
Q Consensus 1 ~~~~~~~~ 8 (820)
|+||||.|
T Consensus 3 m~pp~~a~ 10 (69)
T 2xk0_A 3 MAPPVAAP 10 (69)
T ss_dssp SSCSSSSS
T ss_pred CCCCCCCC
Confidence 55555533
No 284
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=34.78 E-value=2.3e+02 Score=24.77 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 003433 385 LDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKD-AVTYNALLGGYGKQGKYDEVRRMFE 463 (820)
Q Consensus 385 ~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 463 (820)
++.+...|.....- .-|..-...-|..--..++ +.++|..|...|+-.. ...|......+...|++.+|.++|.
T Consensus 46 LErc~~~f~~~~~Y--knD~RyLklWl~ya~~~~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~ 120 (164)
T 2wvi_A 46 LERAVEALQGEKRY--YSDPRFLNLWLKLGRLCNE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQ 120 (164)
T ss_dssp HHHHHHHTTTCGGG--TTCHHHHHHHHHHHHHCSC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhhhhhh--ccCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q ss_pred HHHHCCCCC
Q 003433 464 QMKADCVSP 472 (820)
Q Consensus 464 ~m~~~~~~p 472 (820)
.-++.+-.|
T Consensus 121 ~Gi~~~A~P 129 (164)
T 2wvi_A 121 EGIQQKAEP 129 (164)
T ss_dssp HHHHTTCBS
T ss_pred HHHHcCCCc
No 285
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=33.09 E-value=2.6e+02 Score=24.71 Aligned_cols=37 Identities=11% Similarity=0.050 Sum_probs=24.8
Q ss_pred CCCCHHHHH--HHHHHHhccCCHHHHHHHHHHHhhcCCc
Q 003433 641 IKPNVVTFS--AILNACSRCNSFEDASMLLEELRLFDNQ 677 (820)
Q Consensus 641 ~~Pd~~~~~--~ll~a~~~~g~~~eA~~~~~~~~~~~~~ 677 (820)
.-|..-+|. .-..-|...|..++...+|..++..||.
T Consensus 202 ~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 202 HVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp STTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 556655532 2334566788888888888888877663
No 286
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=32.21 E-value=3e+02 Score=27.81 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 003433 196 ASAMISILGRLGKVDLAKNIFETAL 220 (820)
Q Consensus 196 ~~~l~~~~~~~g~~~~A~~~~~~~~ 220 (820)
...++.-|...|+.++|...++++.
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 4566777777777777777777764
No 287
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.35 E-value=2.7e+02 Score=26.03 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003433 438 DAVTYNALLGGYGKQGKYDEVRRMFEQMK 466 (820)
Q Consensus 438 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 466 (820)
+.......+..+.+.|+.++|.++|-+..
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 34444455566666666666666665543
No 288
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=28.80 E-value=1.6e+02 Score=24.62 Aligned_cols=63 Identities=21% Similarity=0.301 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCC
Q 003433 478 STLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGL--VESAVSLLDEMTKEGIR 541 (820)
Q Consensus 478 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 541 (820)
..++.=|...|+.++|.+.++++..-.. ....+...+..++-+.+. .+.+..++..+.+.|+-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4456666666677777766666632111 122333334444444332 34455566666555443
No 289
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=28.59 E-value=2e+02 Score=28.24 Aligned_cols=64 Identities=22% Similarity=0.305 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCC
Q 003433 477 YSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGL--VESAVSLLDEMTKEGIR 541 (820)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 541 (820)
...++.=|...|+.++|.+.++++..-... ...+...+..++-+.++ .+...+++..+.+.|+-
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 346677777788888888888887431111 22334444444444332 34455667666655544
No 290
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=28.51 E-value=1.8e+02 Score=26.96 Aligned_cols=54 Identities=20% Similarity=0.304 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 003433 209 VDLAKNIFETALNEGYGNT-VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPN 262 (820)
Q Consensus 209 ~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 262 (820)
.+++..+|..|...|+... +..|......+-..|++.+|.++|+.-++.+-.|-
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3577889999988776544 56777888888899999999999998887776664
No 291
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=28.35 E-value=3.8e+02 Score=25.29 Aligned_cols=17 Identities=18% Similarity=-0.306 Sum_probs=7.8
Q ss_pred CHHHHHHHHHHHHhcCC
Q 003433 473 NLLTYSTLIDVYSKGGL 489 (820)
Q Consensus 473 ~~~~~~~li~~~~~~g~ 489 (820)
+..+-...+.++.+.|+
T Consensus 205 ~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 205 NEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 44444444444554443
No 292
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=28.31 E-value=4.7e+02 Score=26.29 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhh
Q 003433 648 FSAILNACSRCNSFEDASMLLEELRL 673 (820)
Q Consensus 648 ~~~ll~a~~~~g~~~eA~~~~~~~~~ 673 (820)
...++.-|...|+.+||.+.++++..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~ 245 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEV 245 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccC
Confidence 57888999999999999999988864
No 293
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=27.94 E-value=4.5e+02 Score=25.92 Aligned_cols=127 Identities=17% Similarity=0.112 Sum_probs=65.2
Q ss_pred HHcCCCHHHHHHHHHHHHHccccc----CChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003433 166 LGNRGEWSKAIQCFAFAVKREERK----NDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (820)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 241 (820)
+...|++++|+..|+.++..-... .....-...++.. +.++-.|..+ ++.++....
T Consensus 124 ~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~i---crEYilal~i--El~Rr~l~~--------------- 183 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILET---AREYILGLSI--ELERRSLKE--------------- 183 (325)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHH---HHHHHHHHHH--HHHHHTCCT---------------
T ss_pred HHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHH---HHHHHHHHHH--HHHHHhcCc---------------
Confidence 567899999999999888653211 1111111122222 1223333332 221111111
Q ss_pred CChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 003433 242 GYCQEAISVFNSMKRYNLKPN--LVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAAR 319 (820)
Q Consensus 242 g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 319 (820)
.+..+.+++---+..-.+.|. .-+...-|....+.+ ++..|..+-+++++.+..++ ..++|+
T Consensus 184 ~~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~K-Ny~tAa~fArrLLel~p~~~---------------~a~qAr 247 (325)
T 3mv2_A 184 GNTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHK-NFLQASYFAGEFLKIISSGP---------------RAEQAR 247 (325)
T ss_dssp TCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCSSH---------------HHHHHH
T ss_pred ccHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhcCCCHH---------------HHHHHH
Confidence 122333333333333333332 234555666677888 89999888888888754322 345567
Q ss_pred HHHHHHHHC
Q 003433 320 NLFNEMVHR 328 (820)
Q Consensus 320 ~~~~~~~~~ 328 (820)
+++....+.
T Consensus 248 kil~~ce~~ 256 (325)
T 3mv2_A 248 KIKNKADSM 256 (325)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHhcC
Confidence 776666554
No 294
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=27.50 E-value=3.3e+02 Score=24.31 Aligned_cols=92 Identities=10% Similarity=-0.005 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003433 402 LDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLI 481 (820)
Q Consensus 402 ~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 481 (820)
+|..+-...+.++.+.+..+ +...+..+.+ .++..+-...+.++.+.|.. ++...+..+.. .++..+-...+
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~ 164 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAA 164 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHH
Confidence 34444444445555555422 2233333332 34555555555555555543 23333333332 24555545555
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 003433 482 DVYSKGGLYKEAMQIFREFKQ 502 (820)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~m~~ 502 (820)
.++.+.+. .++...+..+.+
T Consensus 165 ~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 165 DALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHhCc-hhHHHHHHHHHh
Confidence 55555554 334444444443
No 295
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=27.29 E-value=4.9e+02 Score=27.12 Aligned_cols=48 Identities=10% Similarity=0.122 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 003433 279 DFKHVVEIFDDMLRN--------GVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHR 328 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~--------g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 328 (820)
..++...+++..... ++..+......++.. ..|+..+++.+++.+...
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~ 221 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADM 221 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHh
Confidence 456666777666653 233455555555554 467777777777776543
No 296
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=25.12 E-value=1.9e+02 Score=24.03 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=13.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHch
Q 003433 338 NTLLDAICKGAQMDLAFEIMAEMP 361 (820)
Q Consensus 338 ~~ll~~~~~~g~~~~A~~~~~~m~ 361 (820)
+.++.-|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 345555555666666666666554
No 297
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.60 E-value=2.8e+02 Score=24.20 Aligned_cols=56 Identities=25% Similarity=0.339 Sum_probs=34.4
Q ss_pred HHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHH------HHHhcCChHHHHHHHHHHHH
Q 003433 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMIS------ILGRLGKVDLAKNIFETALN 221 (820)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 221 (820)
+.+.|+|-+|.++++.+-+..........++..||. ...+.|+...|..++.+...
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444588888888888877654222113345555555 22346777777777777654
No 298
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.32 E-value=5.4e+02 Score=30.03 Aligned_cols=138 Identities=12% Similarity=-0.020 Sum_probs=79.4
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003433 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (820)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 234 (820)
.++....++..+...|.++-|.++..+.. .+...-..++.+|...|++++|...|+++.. |+..+.....
T Consensus 809 ~~~~~~~l~~~L~~~~~~~~a~eL~~~~~-------~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~-- 878 (950)
T 4gq2_M 809 ENDLVTELVEKLFLFKQYNACMQLIGWLN-------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFA-- 878 (950)
T ss_dssp SCCHHHHHHHHHHHTTCHHHHHHHGGGCC-------SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCG--
T ss_pred CCccHHHHHHHHHHhcHHHHHHHHHhhcC-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCccccc--
Confidence 34445557777888888887776654432 2222335688889999999999999988742 2221110000
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHH
Q 003433 235 ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDR----ITFNSLLAVCS 310 (820)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~ 310 (820)
..+....++..... ......-|..++..+-+.+ .++.+.++-+.+++.--.-|. ..|..+.++.+
T Consensus 879 --------~~~~~~~ll~~~e~--~~~~~~YY~hV~~LFE~~~-a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~ 947 (950)
T 4gq2_M 879 --------VLREFQEIAEKYHH--QNLLSCYYLHLSKKLFEES-AYIDALEFSLLADASKETDDEDLSIAITHETLKTAC 947 (950)
T ss_dssp --------GGHHHHHHHHHTTT--CSHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHH
T ss_pred --------chhhhhhccCcccc--cchhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHh
Confidence 00111112221111 0112336778888888888 899999888888865322233 24666666665
Q ss_pred hCC
Q 003433 311 RGG 313 (820)
Q Consensus 311 ~~g 313 (820)
..|
T Consensus 948 a~g 950 (950)
T 4gq2_M 948 AAG 950 (950)
T ss_dssp HHC
T ss_pred hCC
Confidence 544
No 299
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=23.30 E-value=5.4e+02 Score=25.32 Aligned_cols=68 Identities=13% Similarity=-0.016 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcC
Q 003433 491 KEAMQIFREFKQAGLKADV--VLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV-TYNSIIDAFGRSA 558 (820)
Q Consensus 491 ~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g 558 (820)
....++---+...++.|.. .+...-+....+.+++..|..+-+++++.+..++.. --..++..|-+.+
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSMA 257 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Confidence 3333443334343443322 234445666778888888888888888865433333 3345555555544
No 300
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=23.24 E-value=1.9e+02 Score=26.61 Aligned_cols=15 Identities=7% Similarity=0.182 Sum_probs=6.8
Q ss_pred HhcCCHHHHHHHHHH
Q 003433 345 CKGAQMDLAFEIMAE 359 (820)
Q Consensus 345 ~~~g~~~~A~~~~~~ 359 (820)
+..|+.+-...+++.
T Consensus 87 ~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 87 CEHRSPTCLRALLDS 101 (241)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHc
Confidence 344454444444443
No 301
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=23.07 E-value=7.7e+02 Score=26.97 Aligned_cols=372 Identities=10% Similarity=0.019 Sum_probs=196.1
Q ss_pred HHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHH--HHHHHHHH
Q 003433 142 LGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDL--AKNIFETA 219 (820)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~ 219 (820)
-..++..+...+.+.+.-.....+....|+-.+|......+-..+...+. .+..++..+.+.|.+.. ...=++.+
T Consensus 88 w~~~l~~~~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~---~c~~l~~~~~~~g~lt~~~~~~R~~~a 164 (618)
T 1qsa_A 88 WRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN---ACDKLFSVWRASGKQDPLAYLERIRLA 164 (618)
T ss_dssp HHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT---HHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcH---HHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 45566655543344555566788888889988888877777666533332 66778888887776543 33333444
Q ss_pred HHcCCCCCHHHHHHHHHHH-----------Hh-cCChhHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHcCCCCHHHHH
Q 003433 220 LNEGYGNTVYAFSALISAY-----------GR-SGYCQEAISVFNSMKRYNLKPNLVT---YNAVIDACGKGGVDFKHVV 284 (820)
Q Consensus 220 ~~~~~~~~~~~~~~li~~~-----------~~-~g~~~~A~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~g~~~~~A~ 284 (820)
...| +...-..|+... .. ..+...+...... +.++... +...+.-+.+. +.+.|.
T Consensus 165 l~~~---~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~rlar~--d~~~A~ 234 (618)
T 1qsa_A 165 MKAG---NTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART-----TGATDFTRQMAAVAFASVARQ--DAENAR 234 (618)
T ss_dssp HHTT---CHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH-----SCCCHHHHHHHHHHHHHHHHH--CHHHHH
T ss_pred HHCC---CHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc-----cCCChhhHHHHHHHHHHHHhc--CHHHHH
Confidence 4332 222222222111 00 0011111111111 1122221 12223333443 578999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH----HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q 003433 285 EIFDDMLRNGVQPDRITFNSLLA----VCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEM 360 (820)
Q Consensus 285 ~~~~~m~~~g~~p~~~~~~~ll~----~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m 360 (820)
.++....+... .+......+-. .....+...++...+....... .+.....-.+....+.|+++.|...|+.|
T Consensus 235 ~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l 311 (618)
T 1qsa_A 235 LMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARL 311 (618)
T ss_dssp HHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99988875432 23333322222 3333453556667777665543 34444444555566789999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH
Q 003433 361 PAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI-RKDA 439 (820)
Q Consensus 361 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~ 439 (820)
...... .....--+..++...|+.++|..+|..+... . +|-.++ +-.+.|..-. . ....... ....
T Consensus 312 ~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~l-Aa~~Lg~~~~-~----~~~~~~~~~~~~ 378 (618)
T 1qsa_A 312 PMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMV-AAQRIGEEYE-L----KIDKAPQNVDSA 378 (618)
T ss_dssp CTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHH-HHHHTTCCCC-C----CCCCCCSCCCCH
T ss_pred cccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHH-HHHHcCCCCC-C----CCCCCChhHHhh
Confidence 864221 2333334566778899999999999998742 1 233332 1223332100 0 0000000 0011
Q ss_pred HH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHH
Q 003433 440 VT---YNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLK--ADVVLYSA 514 (820)
Q Consensus 440 ~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~ 514 (820)
.. -..-+..+...|....|...+..+... .+......+.......|..+.++.........+.. .=+..|..
T Consensus 379 ~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~ 455 (618)
T 1qsa_A 379 LTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYND 455 (618)
T ss_dssp HHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHH
T ss_pred hccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHH
Confidence 11 112345677889999999999888764 24444445666667788888887665443222100 00013556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003433 515 LIDALCKNGLVESAVSLLDEMTKEGIRPNVV 545 (820)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 545 (820)
++..+.+.-.++.++-.---..++++.|+.+
T Consensus 456 ~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~a~ 486 (618)
T 1qsa_A 456 LFKRYTSGKEIPQSYAMAIARQESAWNPKVK 486 (618)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHTTCTTCB
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCCCCCc
Confidence 6666666655665544333345666777654
No 302
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=22.96 E-value=40 Score=31.35 Aligned_cols=14 Identities=14% Similarity=-0.128 Sum_probs=6.1
Q ss_pred HHcCCHHHHHHHHH
Q 003433 520 CKNGLVESAVSLLD 533 (820)
Q Consensus 520 ~~~g~~~~A~~~~~ 533 (820)
.+.|+.+-+..+++
T Consensus 218 ~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 218 KQRKNVWMINHLQE 231 (240)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHH
Confidence 44455444433333
No 303
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=22.59 E-value=4.9e+02 Score=24.51 Aligned_cols=154 Identities=13% Similarity=0.006 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003433 402 LDRVSYNTVLSIYAKLGR-----FEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLT 476 (820)
Q Consensus 402 ~d~~~~~~li~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 476 (820)
++..+-...+.++.+.+. ...+...+..+.. .++..+-...+.++.+.|+.+ +...+..+.. .++...
T Consensus 103 ~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~v 175 (280)
T 1oyz_A 103 KSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDV 175 (280)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHH
Confidence 355444455555554431 3344444444433 466666667777777777633 4445555554 346555
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 003433 477 YSTLIDVYSKGG-LYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFG 555 (820)
Q Consensus 477 ~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 555 (820)
-...+.++...| ....+...+..+.+ .++..+-...+.++.+.|.. ++...+.++.+. ++ .....+.++.
T Consensus 176 r~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~-~~~~~L~~~l~d---~~--vr~~a~~aL~ 246 (280)
T 1oyz_A 176 RNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDK-RVLSVLCDELKK---NT--VYDDIIEAAG 246 (280)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCG-GGHHHHHHHHTS---SS--CCHHHHHHHH
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCH-hhHHHHHHHhcC---cc--HHHHHHHHHH
Confidence 555555555554 23455555555544 35777777778888888864 455555555543 33 2334556666
Q ss_pred hcCchhhhHHhHHHHhh
Q 003433 556 RSATTECTVDDVERDLG 572 (820)
Q Consensus 556 ~~g~~~~a~~~~~~~l~ 572 (820)
+.|. .+++..+.+.+.
T Consensus 247 ~i~~-~~~~~~L~~~l~ 262 (280)
T 1oyz_A 247 ELGD-KTLLPVLDTMLY 262 (280)
T ss_dssp HHCC-GGGHHHHHHHHT
T ss_pred hcCc-hhhhHHHHHHHh
Confidence 6666 345555444443
No 304
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.56 E-value=6.7e+02 Score=26.06 Aligned_cols=35 Identities=9% Similarity=0.033 Sum_probs=20.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003433 451 KQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYS 485 (820)
Q Consensus 451 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 485 (820)
+.++.+.|+..+.+|++.|..|....-..++.+.-
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~e 301 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASE 301 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 45677777777777777765554444444444433
No 305
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.19 E-value=1.8e+02 Score=31.04 Aligned_cols=65 Identities=9% Similarity=-0.010 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCC--c-hhHHHHHHHhcc---ccchHHHHHHHHHHHhhcCC
Q 003433 645 VVTFSAILNACSRCNSFEDASMLLEELRLFDN--Q-VYGVAHGLLMGY---RDNIWVQALSLFDEVKLMDS 709 (820)
Q Consensus 645 ~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~--~-~~~~~~~~~~~~---~~~~~~~A~~~~~~~~~~~~ 709 (820)
...++.++..|.+.+.++.|.++..+..-+.. . .-.+.+.++.|. .+++|.+|.+.+..++..-|
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 44589999999999999999999998853211 1 111223333222 25566667666666666554
No 306
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=21.55 E-value=1.4e+02 Score=25.80 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=11.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 003433 479 TLIDVYSKGGLYKEAMQIFREF 500 (820)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~~m 500 (820)
.++.=|...|+.++|.+.++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444455555555555555554
No 307
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=20.91 E-value=4.1e+02 Score=23.13 Aligned_cols=53 Identities=11% Similarity=-0.003 Sum_probs=39.1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHH-H-----HHhcCChhHHHHHHHHHHh
Q 003433 204 GRLGKVDLAKNIFETALNEGYGN--TVYAFSALIS-A-----YGRSGYCQEAISVFNSMKR 256 (820)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~-~-----~~~~g~~~~A~~~~~~m~~ 256 (820)
...|++-+|-++++.+-+....+ ....|..||. + ..+.|+..-|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34499999999999997765455 4566777777 2 3457888888888888754
No 308
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.91 E-value=3.5e+02 Score=28.82 Aligned_cols=65 Identities=14% Similarity=0.063 Sum_probs=40.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHccc--ccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003433 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREE--RKNDQGKLASAMISILGRLGKVDLAKNIFETALNE 222 (820)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 222 (820)
.++.+++.|...+.++.|..+..+..-... ........+.-+++.+.-.+++.+|.+.|..+.+.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 466677778888888888877776632110 00111233445667777777787887777777654
No 309
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=20.53 E-value=1e+03 Score=27.46 Aligned_cols=23 Identities=4% Similarity=-0.211 Sum_probs=10.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 003433 478 STLIDVYSKGGLYKEAMQIFREF 500 (820)
Q Consensus 478 ~~li~~~~~~g~~~~A~~~~~~m 500 (820)
..++.+++...+.....++++.+
T Consensus 762 ~~ll~aL~~~~d~~~l~~~L~~~ 784 (909)
T 4fke_A 762 DKLRSALACSNEVWLLNRYLGYT 784 (909)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCHHHHHHHHHHH
Confidence 34444444444444444444443
No 310
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=20.09 E-value=4.8e+02 Score=23.54 Aligned_cols=36 Identities=8% Similarity=0.029 Sum_probs=19.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003433 451 KQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK 486 (820)
Q Consensus 451 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 486 (820)
+-.+.+.|+-.+.+|++.|..|....-..++.+.-.
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsED 54 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASED 54 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 345666666666666666655544444444444433
No 311
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.03 E-value=2.8e+02 Score=23.73 Aligned_cols=64 Identities=13% Similarity=0.226 Sum_probs=45.0
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhh
Q 003433 498 REFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTEC 562 (820)
Q Consensus 498 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 562 (820)
+.+.+.|++ -...-..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-+.+
T Consensus 16 ~~l~~~g~r-~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 16 MSIKKNGLK-NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp HHHHHCC---CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCC-CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEE
Confidence 345667776 3444455677777777778899999999887666778777777788888887653
Done!