BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003434
(820 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BTV|A Chain A, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|B Chain B, Atomic Model For Bluetongue Virus (Btv) Core
Length = 901
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 466 RIIDETLDAFFQLPIPMHPALLPDLMAG 493
+II+E L + F LP M ALLPDL+AG
Sbjct: 532 QIINEDLHSVFSLPDDMFNALLPDLIAG 559
>pdb|1OHF|A Chain A, The Refined Structure Of Nudaurelia Capensis Omega Virus
pdb|1OHF|B Chain B, The Refined Structure Of Nudaurelia Capensis Omega Virus
pdb|1OHF|C Chain C, The Refined Structure Of Nudaurelia Capensis Omega Virus
pdb|1OHF|D Chain D, The Refined Structure Of Nudaurelia Capensis Omega Virus
Length = 644
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 749 LFRTDTESLIERFRRVTLETYGSSARSRLPLPP-TSGQWNPTEP 791
L T + + + FR + ET +S RS +PLPP T GQ P P
Sbjct: 396 LATTTSAANVINFRNLDAETTAASNRSEVPLPPLTFGQTAPNNP 439
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 348 VAVATLHACYG--NEIK--QFISSIVELTPDAVQVLRAADKLEKDLVQIAVEDSVDSDDG 403
+AV + C+G E K I+S L P V+R DK + + Q+ V D V+ G
Sbjct: 147 IAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEMKGG 206
Query: 404 GK 405
+
Sbjct: 207 DR 208
>pdb|2IOP|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|C Chain C, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|D Chain D, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOQ|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90
pdb|2IOQ|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90
Length = 624
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 297 EKADSSRRASKNQPNPL--PVLAILAKDVGELAIKERRVFSPILKRWHPLAAGVAVATLH 354
++ D S + ++ P V A+L + V ++ + R +P + +A L
Sbjct: 495 DEVDESAKEAEKALTPFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLF 554
Query: 355 ACYGNEIKQFISSIVELTPDAVQVLRAAD 383
A G ++ + + I EL PD V V RAAD
Sbjct: 555 AAAGQKVPE-VKYIFELNPDHVLVKRAAD 582
>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|B Chain B, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|C Chain C, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|D Chain D, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
Length = 320
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 7/130 (5%)
Query: 285 RSSLRTAFAQRMEKADSSRRASKNQPNPLPVLAILAKDVG---ELAIKERRVFSPILKRW 341
S+ ++A+RM D RA Q I G I++ V ++ +
Sbjct: 138 NSNFGYSYAKRM--IDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKV 195
Query: 342 HPLAAGVAVATLHACYGNEIKQFISSIVELTPDAVQVLRAADKLEKDLVQIAVEDSVDSD 401
H LA A GN +QFI S+ +L + VLR +++E ++ + ED V
Sbjct: 196 H-LAKSSGSALTVWGTGNPRRQFIYSL-DLAQLFIWVLREYNEVEPIILSVGEEDEVSIK 253
Query: 402 DGGKAIIREM 411
+ +A++ M
Sbjct: 254 EAAEAVVEAM 263
>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
pdb|4B8W|B Chain B, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
Length = 319
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 7/130 (5%)
Query: 285 RSSLRTAFAQRMEKADSSRRASKNQPNPLPVLAILAKDVG---ELAIKERRVFSPILKRW 341
S+ ++A+RM D RA Q I G I++ V ++ +
Sbjct: 137 NSNFGYSYAKRM--IDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKV 194
Query: 342 HPLAAGVAVATLHACYGNEIKQFISSIVELTPDAVQVLRAADKLEKDLVQIAVEDSVDSD 401
H LA A GN +QFI S+ +L + VLR +++E ++ + ED V
Sbjct: 195 H-LAKSSGSALTVWGTGNPRRQFIYSL-DLAQLFIWVLREYNEVEPIILSVGEEDEVSIK 252
Query: 402 DGGKAIIREM 411
+ +A++ M
Sbjct: 253 EAAEAVVEAM 262
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,930,000
Number of Sequences: 62578
Number of extensions: 916995
Number of successful extensions: 2248
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2245
Number of HSP's gapped (non-prelim): 14
length of query: 820
length of database: 14,973,337
effective HSP length: 107
effective length of query: 713
effective length of database: 8,277,491
effective search space: 5901851083
effective search space used: 5901851083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)