BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003434
(820 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q58939|Y1544_METJA Uncharacterized protein MJ1544 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1544 PE=4 SV=1
Length = 441
Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 7 GRKIESTVLPLELLQQLKYSDFTDQQEYDAWQK-RTLKLLEAGLLL--HPRVPL-DKSNI 62
GR +++ +LPL + LK+ +F ++ Y +K LK L + P + L D NI
Sbjct: 158 GRNLKTEILPLNFKEFLKFKNFNVKKRYSTIEKAELLKYLNEFIKFGGFPEITLIDDENI 217
Query: 63 AAQRLRQIISAALDRPI---ETGRNNESMQVLRSTVISLAS 100
+ L++ + R + + RN + ++VLR+ +I+L +
Sbjct: 218 KKEILKEYLDGIFYRDVVERHSIRNIKEIKVLRNILINLFA 258
>sp|Q8K0T7|UN13C_MOUSE Protein unc-13 homolog C OS=Mus musculus GN=Unc13c PE=1 SV=3
Length = 2210
Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 702 SRAFTRQDSQIIEDDFKSLKDLFWANGDGLPIELIDKFS--ATARGVLPLFRTDTESLIE 759
++ T + I+E ++K F A G+GL ++K + R L L+ T++LI+
Sbjct: 1963 AKGLTPRQCAIVEVVLATIKQYFHAGGNGLKKNFLEKSPDLHSLRYALSLYTQTTDALIK 2022
Query: 760 RFRRVTLETYGSSARS 775
+F +ET GS +RS
Sbjct: 2023 KF----IETQGSQSRS 2034
>sp|Q92DX0|CHER_LISIN Chemotaxis protein methyltransferase OS=Listeria innocua serovar 6a
(strain CLIP 11262) GN=cheR PE=3 SV=1
Length = 262
Score = 34.3 bits (77), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 35/170 (20%)
Query: 562 VPQLCIRINSFHRIKSELDVLEKRVITHLRNCESAHAEDFSNGLGKKFELTPAACVEGVQ 621
+ + I +++F R ++ DVLEK+VI L ED S G K + AAC G +
Sbjct: 66 ISLITINVSAFFRNRNRWDVLEKQVIPRL-------LED-SRG---KLRVWSAACSSGEE 114
Query: 622 QLSEAVA---------YKIVFHDLSHVLWDGLYVGEPSSSRIEPLLQELERNLLI----- 667
S A+ Y I+ DL + +GE S ++E L ++ R+ I
Sbjct: 115 PYSLAIMMERSVGTRHYDILATDLEPAILKRAVIGEYQSRQMEELNEQERRSAFIEKGDT 174
Query: 668 --ISDTVHERVRTR---IITDIMKASFD-----GFLLVLLAGGPSRAFTR 707
I + +R R ++TD + FD L+ A G +A+ +
Sbjct: 175 YQILPEYRKAIRFRRHDLLTDYYEKGFDLIVCRNVLIYFTAEGKHQAYQK 224
>sp|P39096|RLA0_LEICH 60S acidic ribosomal protein P0 OS=Leishmania chagasi GN=LCP0 PE=3
SV=1
Length = 322
Score = 33.9 bits (76), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 623 LSEAVAYKIVFHDLSHVLWDGLYVGEPSSSRIEPLLQELERNLLIISDTVHERVRTRIIT 682
++E + K++ LS+V L G P+SS I P+L + +NLL +S
Sbjct: 212 MTEDMVEKMLMEGLSNVAAMALGAGIPTSSTIGPMLVDAFKNLLAVSVATSYEFEEHNGK 271
Query: 683 DIMKASFDGFL 693
++ +A+ +G L
Sbjct: 272 ELREAAINGLL 282
>sp|P39097|RLA0_LEIIN 60S acidic ribosomal protein P0 OS=Leishmania infantum GN=LIPO-A
PE=3 SV=1
Length = 323
Score = 33.5 bits (75), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 623 LSEAVAYKIVFHDLSHVLWDGLYVGEPSSSRIEPLLQELERNLLIISDTVHERVRTRIIT 682
++E + K++ LS+V L G P+SS I P+L + +NLL +S
Sbjct: 213 MTEDMVEKMLMEGLSNVAAMALGAGIPTSSTIGPMLVDAFKNLLAVSVATSYEFEEHNGK 272
Query: 683 DIMKASFDGFL 693
++ +A+ +G L
Sbjct: 273 ELREAAINGLL 283
>sp|Q9UHC1|MLH3_HUMAN DNA mismatch repair protein Mlh3 OS=Homo sapiens GN=MLH3 PE=1 SV=3
Length = 1453
Score = 33.1 bits (74), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 33/156 (21%)
Query: 162 MLHNMCFTWVLFHRFVA---------TGQADTDLLYAADNQLAEV----------AKDAK 202
M+H+M + ++F+A G+A +LL D A + + +
Sbjct: 1185 MIHSMQVLQQVDNKFIACLMSTKTEENGEAGGNLLVLVDQHAAHERIRLEQLIIDSYEKQ 1244
Query: 203 ATKDPEYAKILSSTLTS----IMSWAEKRLL-AYHDTFDDGNLE-----TMDGIVSLGVS 252
+ K+LSSTL ++ ++RLL YH +D LE T D +V +G
Sbjct: 1245 QAQGSGRKKLLSSTLIPPLEITVTEEQRRLLWCYHKNLEDLGLEFVFPDTSDSLVLVG-- 1302
Query: 253 SAKILTEDISNEYRRRRKGEVDVPRSRVETYIRSSL 288
K+ + E R+G V +S VE +IR L
Sbjct: 1303 --KVPLCFVEREANELRRGRSTVTKSIVEEFIREQL 1336
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 296,270,316
Number of Sequences: 539616
Number of extensions: 12320511
Number of successful extensions: 33633
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 33624
Number of HSP's gapped (non-prelim): 33
length of query: 820
length of database: 191,569,459
effective HSP length: 126
effective length of query: 694
effective length of database: 123,577,843
effective search space: 85763023042
effective search space used: 85763023042
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)