Query 003434
Match_columns 820
No_of_seqs 189 out of 225
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 23:21:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003434.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003434hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05664 DUF810: Protein of un 100.0 7E-158 2E-162 1373.6 54.2 566 2-584 92-677 (677)
2 KOG1011 Neurotransmitter relea 100.0 7.2E-58 1.6E-62 504.2 32.9 535 138-765 469-1096(1283)
3 KOG1328 Synaptic vesicle prote 100.0 3.9E-32 8.5E-37 305.0 44.4 525 162-764 365-921 (1103)
4 PF10540 Membr_traf_MHD: Munc1 99.9 1.9E-22 4.2E-27 195.1 8.6 111 651-761 1-137 (137)
5 PF06046 Sec6: Exocyst complex 98.9 1.4E-08 3E-13 120.2 16.7 330 409-803 190-531 (566)
6 KOG2180 Late Golgi protein sor 97.8 0.16 3.5E-06 60.4 37.9 323 213-588 177-520 (793)
7 PF06292 DUF1041: Domain of Un 97.8 6.2E-05 1.3E-09 69.9 7.2 90 278-367 2-105 (106)
8 KOG3543 Ca2+-dependent activat 97.5 0.0086 1.9E-07 69.2 21.1 323 121-486 610-956 (1218)
9 PF04091 Sec15: Exocyst comple 97.2 0.0026 5.6E-08 70.3 11.9 253 453-753 26-280 (311)
10 KOG2286 Exocyst complex subuni 97.0 1.5 3.3E-05 53.0 35.8 350 355-805 273-636 (667)
11 COG5173 SEC6 Exocyst complex s 96.9 1.3 2.8E-05 51.7 32.0 414 279-807 256-705 (742)
12 PF04437 RINT1_TIP1: RINT-1 / 96.7 0.15 3.2E-06 60.1 21.4 289 421-756 131-451 (494)
13 PF04100 Vps53_N: Vps53-like, 72.2 1.9E+02 0.0041 33.3 25.2 115 332-448 262-383 (383)
14 KOG0412 Golgi transport comple 60.3 29 0.00064 42.2 8.1 214 564-804 543-771 (773)
15 PF12290 DUF3802: Protein of u 47.9 2.1E+02 0.0046 27.2 10.0 84 641-726 22-109 (113)
16 PF15080 DUF4547: Domain of un 47.0 19 0.00041 36.1 3.2 97 651-766 70-169 (196)
17 PF10474 DUF2451: Protein of u 46.8 1.5E+02 0.0033 31.7 10.3 149 564-725 6-167 (234)
18 PF12854 PPR_1: PPR repeat 44.9 33 0.00071 25.1 3.5 33 114-150 1-33 (34)
19 PF10191 COG7: Golgi complex c 44.7 7.5E+02 0.016 31.2 20.9 272 216-506 123-438 (766)
20 PF14923 CCDC142: Coiled-coil 42.5 36 0.00078 39.7 5.1 89 671-761 295-388 (450)
21 PF08385 DHC_N1: Dynein heavy 34.8 3.8E+02 0.0083 31.8 12.5 166 311-505 354-538 (579)
22 KOG4032 Uncharacterized conser 24.0 3.6E+02 0.0078 27.9 8.0 78 158-248 37-114 (184)
23 KOG0448 Mitofusin 1 GTPase, in 23.9 1.5E+03 0.032 28.3 15.1 131 367-504 418-553 (749)
24 COG3827 Uncharacterized protei 22.8 74 0.0016 33.5 3.0 50 633-682 175-227 (231)
25 PF04437 RINT1_TIP1: RINT-1 / 21.0 7.2E+02 0.016 29.3 11.3 182 317-502 176-395 (494)
No 1
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=100.00 E-value=7.1e-158 Score=1373.59 Aligned_cols=566 Identities=60% Similarity=0.976 Sum_probs=539.3
Q ss_pred cccccccccccccccHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhhCCCCCCCCCcHHHHHHHHHHHh-----hcc
Q 003434 2 CWLQVGRKIESTVLPLELLQQLKYSDFTDQQEYDAWQKRTLKLLEAGLLLHPRVPLDKSNIAAQRLRQIISA-----ALD 76 (820)
Q Consensus 2 ~~~~~g~~~~~~~lplell~~~~~s~F~~~~~y~~Wq~rql~~le~gl~~~p~~~~~~~~~~~~~lr~~~~~-----~~~ 76 (820)
++||+|||+|+|+|||||||++|+|||+|++||++|||||||+|||||++||++|+|++|++|+|||+++++ ++.
T Consensus 92 ~~~~~g~r~e~~~lpLeLl~~~~~sdF~d~~ey~~WqkRql~~Le~gL~~hp~~~l~~s~~~a~~lr~~~~~~~~~~~~~ 171 (677)
T PF05664_consen 92 AAGQVGRRAESIVLPLELLQQLKPSDFSDEKEYEQWQKRQLKVLEAGLLNHPSVPLDKSNASAQRLRQIIAKIREDEAED 171 (677)
T ss_pred HHHHhhcccccccccHHHHhhCCHhhCCCHHHHHHHHHHHHHHHHHHHHhCcCCCccccchhHHHHHHHHHhcccccccC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCcccccchhHHHHHHHHHHHhhccC-CCC-CCCcccccCCCCCCHHHHHHHHHHhhccCCCccchHhHHHHHHHHHhhh
Q 003434 77 RPIETGRNNESMQVLRSTVISLASRS-DGS-LNEPCHWADGFPFNLRLYEMLLEACFDSSYETSIIEEVDELMEQIKKTW 154 (820)
Q Consensus 77 ~~~~~~~~~e~~~~l~~~~~~la~r~-~~~-~~e~chWadg~pln~rlY~~LL~~~fD~~de~~l~~e~dElLe~lk~tW 154 (820)
+|++||+++|+||+||++|++||||+ .+| ++|+||||||||+|+|+|++||++|||++|||+|+||+||+||+||+||
T Consensus 172 ~~~~~~~~se~~~~l~~~~~~La~r~~~~~~~~e~chWadgyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK~tW 251 (677)
T PF05664_consen 172 KPIDTGKNSESMRALRSAVISLAWRPSRDGSSGETCHWADGYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLKKTW 251 (677)
T ss_pred CcCccccccHHHHHHHHHHHHHhcCCCCCCCCCcccccccCCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHHHHh
Confidence 99999999999999999999999995 566 8999999999999999999999999999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhhhh-cCCCchhHH------------hHHHHHHhHH
Q 003434 155 VILGMNQMLHNMCFTWVLFHRFVATGQADTDLLYAADNQLAEVAKDAK-ATKDPEYAK------------ILSSTLTSIM 221 (820)
Q Consensus 155 ~~LgI~~~~h~vcf~wVlf~qfv~t~e~e~~lL~~a~~~l~ev~~d~k-~~~~~~~~~------------~l~s~l~~i~ 221 (820)
++|||||++||+||+||+|||||+|| |+|||.+|+++|++|+.|+| .++++.|.+ +|+|+|++|+
T Consensus 252 ~~LGIt~~lHn~cf~WVlF~qyv~tg--e~~LL~~a~~~L~ev~~d~~~~~~~~~y~~sl~~~~~~~~l~ll~s~L~si~ 329 (677)
T PF05664_consen 252 SILGITQTLHNVCFAWVLFRQYVATG--EPDLLKAAIQQLQEVAKDAKRATKDPLYLKSLRCSVETSDLSLLSSVLSSIQ 329 (677)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHhccccccchhhhhhhhccccchhhHHHHHHHHHHH
Confidence 99999999999999999999999999 79999999999999999998 699999999 9999999999
Q ss_pred HHHHHHHhhhHhhhcCCChHHHhHHHHHHHHHhhhhhccchhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccc
Q 003434 222 SWAEKRLLAYHDTFDDGNLETMDGIVSLGVSSAKILTEDISNEYRRRRKGEVDVPRSRVETYIRSSLRTAFAQRMEKADS 301 (820)
Q Consensus 222 ~W~~k~L~~yH~~f~~~~~~~m~~~~~v~~~~~~~l~ed~~~~~~~~~~~~~~~~~~~v~~yI~~s~~~af~~~l~~~~~ 301 (820)
+|++|||+|||+||++++++.|+++++|++.+++|+++|++..++.+.. ..++++|+.||++|+++||++..+..++
T Consensus 330 ~W~ekrL~dYH~~f~~~~~~~me~llsl~~~a~~il~ed~~~~~~~~~~---~~~~~~ie~YIrsSi~~Af~~~~~~~~~ 406 (677)
T PF05664_consen 330 GWAEKRLLDYHDHFSEGNIGVMEGLLSLAVSAAKILGEDVSREYRRKRS---KVARSRIESYIRSSIKAAFARMASSVDS 406 (677)
T ss_pred HHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHhhchhHHHHhhhc---cchHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 9999999999999999999999999999999999999999877765442 2788999999999999999998887776
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHHHHHHhhhccchhhhccCccccccHHHHHHHHHhHHHHHHHHhhhhcHHHHHHhhh
Q 003434 302 SRRASKNQPNPLPVLAILAKDVGELAIKERRVFSPILKRWHPLAAGVAVATLHACYGNEIKQFISSIVELTPDAVQVLRA 381 (820)
Q Consensus 302 ~~~~~~~~~~~~~~l~~La~~i~~la~~e~~~ysPiL~~~~p~a~~Vaa~~Lh~lyg~~Lk~~l~~~~~lt~~~~~vl~a 381 (820)
+. ..++.|+|++||++|++||.+|+++|||+|++|||+|++|||++||+|||++||+|+++++++|+++++++++
T Consensus 407 ~~-----~~~~~~~L~~LA~ei~~la~~e~~~FsPiLk~whP~a~~VAa~~LH~~Yg~~Lk~~L~~~~~LT~d~v~VL~a 481 (677)
T PF05664_consen 407 RS-----DSEPSHVLAQLAKEIKELAKKEKEVFSPILKRWHPNAAGVAAATLHSCYGNELKQFLSGVTHLTPDVVEVLQA 481 (677)
T ss_pred cc-----cccchHHHHHHHHHHHHHHHHhHHhcCchhcccCchHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHHH
Confidence 65 3689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhcccCCCCCcccccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCCCcccH
Q 003434 382 ADKLEKDLVQIAVEDSVDSDDGGKAIIREMPPYEAEGAIANLVKMWLKTRIDRLKEWVDRNLQQEDWNPQQNQEGFASSA 461 (820)
Q Consensus 382 ad~Lek~L~~i~~e~~~~~~d~~~~~~~~l~P~~ie~~f~~~V~~Wl~~~~~k~~ewV~rAie~E~w~P~s~~~~hS~Sv 461 (820)
||+|||+|++|+ +++|+||||+++|+|+||++|+++.+||++||+++.+++.+||+||+++|+|+|++++++||+||
T Consensus 482 A~~LEk~Lvq~~---~~~~edggk~~~rem~Py~vE~~i~~lv~~Wi~~~~~~l~ewv~ra~~qE~W~P~S~~e~hs~Sv 558 (677)
T PF05664_consen 482 ADKLEKALVQMV---SVDCEDGGKSLIREMPPYEVESLISNLVKRWIQEQLERLNEWVDRAIKQEKWNPRSKEERHSPSV 558 (677)
T ss_pred HHHHHHHHHHHH---HhhccccccccccCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCcchH
Confidence 999999999998 78889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcCchHHHHHHHHHHHHHHHHHHHhhccCCcccCCCCCccccccCCCchhHHHhhhcCC
Q 003434 462 VEVLRIIDETLDAFFQLPIPMHPALLPDLMAGLDRCLQYYVTKAKSGCGSRNTYVPTMPALTRCTTGSKFQGVWKKKEKS 541 (820)
Q Consensus 462 VDvf~~~~etvd~f~~L~wp~~~~~l~~L~~gi~~~l~~Y~~~v~~~~~~k~~~~p~~P~lTr~~~~~~~~~~~Kkk~~~ 541 (820)
|||||||+||+|+||+|+||+++.+|++|++||+++||+||++++++||++++|+|++|+||||+++++|++.|||+..+
T Consensus 559 VEvfri~~eTvd~ff~L~~~~~~~~l~~L~~gld~~lq~Y~~~v~~~~gsk~~liP~~P~LTR~~~~sk~~~~~Kk~~~~ 638 (677)
T PF05664_consen 559 VEVFRIFNETVDQFFQLPWPMHADFLQALSKGLDKALQRYCEKVEQSCGSKQSLIPPLPPLTRCKKDSKFKKLWKKKWKS 638 (677)
T ss_pred HHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCchhhhhhhhhhHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999755
Q ss_pred CCcccccccccccCCccccccCcceEEeccHHHHHHHHHHHHH
Q 003434 542 PNSQKKNSQVATMNGEISFRVPQLCIRINSFHRIKSELDVLEK 584 (820)
Q Consensus 542 ~~~~e~~~~~~~~~~~~s~~~~~lCVrLNnLe~i~~~L~~Lek 584 (820)
...+.... ....++.++|++|||||||||+++||++|||
T Consensus 639 ~~~~~~~~----~~~~~~~~~~~lcVrLNtL~yil~qL~~LEK 677 (677)
T PF05664_consen 639 STNPDERF----SSKINSQFTPRLCVRLNTLEYILSQLDKLEK 677 (677)
T ss_pred cccccccc----ccCcccCccCceeeeecHHHHHHHHHHhhcC
Confidence 43222111 0123588999999999999999999999985
No 2
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.2e-58 Score=504.23 Aligned_cols=535 Identities=17% Similarity=0.294 Sum_probs=423.5
Q ss_pred cchHhHHHHHHHHHhhhhcCCCch-HHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHH-----------Hhhhh---
Q 003434 138 SIIEEVDELMEQIKKTWVILGMNQ-MLHNMCFTWVLFHRFVATGQADTDLLYAADNQLAEV-----------AKDAK--- 202 (820)
Q Consensus 138 ~l~~e~dElLe~lk~tW~~LgI~~-~~h~vcf~wVlf~qfv~t~e~e~~lL~~a~~~l~ev-----------~~d~k--- 202 (820)
.+-|-+.||.+++..++.+-.|-| |.|..|+.- +|++.|- |..+...++.++.. ++|.-
T Consensus 469 ~fdetaqeivdefamrygiesiyqamthfacl~s----kymcpgv--pavmstllaninayyahttastnvsasdrfaas 542 (1283)
T KOG1011|consen 469 YFDETAQEIVDEFAMRYGIESIYQAMTHFACLSS----KYMCPGV--PAVMSTLLANINAYYAHTTASTNVSASDRFAAS 542 (1283)
T ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhh----cccCCCc--HHHHHHHHHhhhHHhhccccccccCcchhhhhh
Confidence 455678999999999999999999 999999776 9999998 88887777776641 22210
Q ss_pred c-CCCchhHHhHHHHHHhHHHHHHHHHhhhHhhhcCCChHHHhHHHHHHHHHhhhhhccchhhhhhhccCCC---Cchhh
Q 003434 203 A-TKDPEYAKILSSTLTSIMSWAEKRLLAYHDTFDDGNLETMDGIVSLGVSSAKILTEDISNEYRRRRKGEV---DVPRS 278 (820)
Q Consensus 203 ~-~~~~~~~~~l~s~l~~i~~W~~k~L~~yH~~f~~~~~~~m~~~~~v~~~~~~~l~ed~~~~~~~~~~~~~---~~~~~ 278 (820)
+ .++ -|+++|..+-++. .--|+.|..+|+.+....++.+-|-.-++..| +.-++...++ ..+++
T Consensus 543 nfgke-rfvklldqlhnsl----ridls~yrnnfpassperlqdlkstvdlltsi-------tffrmkvqelqspprasq 610 (1283)
T KOG1011|consen 543 NFGKE-RFVKLLDQLHNSL----RIDLSAYRNNFPASSPERLQDLKSTVDLLTSI-------TFFRMKVQELQSPPRASQ 610 (1283)
T ss_pred cccHH-HHHHHHHHHhhhh----eeeHHHHhcCCCCCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcCCChHHH
Confidence 0 111 2567877777665 66799999999999999999986655444322 2222321112 24778
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHHHHhhhccchhhhccC--ccccccHHHHHHH
Q 003434 279 RVETYIRSSLRTAFAQRMEKADSSRRASKNQPNPLPVLAILAKDVGELAIKERRVFSPILKRWHP--LAAGVAVATLHAC 356 (820)
Q Consensus 279 ~v~~yI~~s~~~af~~~l~~~~~~~~~~~~~~~~~~~l~~La~~i~~la~~e~~~ysPiL~~~~p--~a~~Vaa~~Lh~l 356 (820)
.|.+++..++...|+-+.+++...-..++.+-+|.. .|..-|..++++|+++|+|.|++++. ++|.++|.+||++
T Consensus 611 vvkdcvkaclnstye~ifnnchelys~s~~nldfw~---klit~ivsiieedknsytp~lnqfpqelnvgk~saevmw~l 687 (1283)
T KOG1011|consen 611 VVKDCVKACLNSTYEYIFNNCHELYSPSITNLDFWY---KLITLIVSIIEEDKNSYTPALNQFPQELNVGKLSAEVMWSL 687 (1283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccccchhhHH---HHHHHHHHHHHhccccCChhhhhChhhhccccchHHHHHHH
Confidence 899999999999999998875433222222344444 45666799999999999999999966 4999999999999
Q ss_pred HHhHHHHHHHHhhhhcHHHHHHhhhhhHHH-----HHHHHHhhhcccCCCCCcccccccCCCc-----cchhhhHHHHHH
Q 003434 357 YGNEIKQFISSIVELTPDAVQVLRAADKLE-----KDLVQIAVEDSVDSDDGGKAIIREMPPY-----EAEGAIANLVKM 426 (820)
Q Consensus 357 yg~~Lk~~l~~~~~lt~~~~~vl~aad~Le-----k~L~~i~~e~~~~~~d~~~~~~~~l~P~-----~ie~~f~~~V~~ 426 (820)
|.+|||+.++++.+ ...|+++|+|+ |||++.| +++++.| +++.||.|||.+
T Consensus 688 faqdmk~aleeh~k-----~~~cksadymnl~fkvk~ly~ey--------------v~dlp~~k~~vpeypawf~pfv~q 748 (1283)
T KOG1011|consen 688 FAQDMKYALEEHAK-----KKLCKSADYMNLHFKVKWLYNEY--------------VADLPTYKSSVPEYPAWFEPFVMQ 748 (1283)
T ss_pred HHHHHHHHHHHHhh-----hccccCcchhheeeehhhhHHHH--------------HhhchhhhccCCCchHHHHHHHHH
Confidence 99999999999976 88999999988 7788765 4455555 368999999999
Q ss_pred HHHHHHHHHHHHHHhhhcc---CCcccCCCCCCCcccHHHHHHHHHHHHHHHhCCCCCCC---cCchHHHHHHHHHHHHH
Q 003434 427 WLKTRIDRLKEWVDRNLQQ---EDWNPQQNQEGFASSAVEVLRIIDETLDAFFQLPIPMH---PALLPDLMAGLDRCLQY 500 (820)
Q Consensus 427 Wl~~~~~k~~ewV~rAie~---E~w~P~s~~~~hS~SvVDvf~~~~etvd~f~~L~wp~~---~~~l~~L~~gi~~~l~~ 500 (820)
|++++++..++++++|++. |+|+..|++..||+||||+|+.+||+++++.+|+||++ +.+|+.|+++|++++.+
T Consensus 749 wldenee~s~dflrga~e~dkkdgf~qtseha~fs~svvdvftqlnqsfeiikklecpdp~i~ah~mrrfakti~kvllq 828 (1283)
T KOG1011|consen 749 WLDENEEVSMDFLRGALERDKKDGFQQTSEHALFSCSVVDVFTQLNQSFEIIKKLECPDPEIAAHYMRRFAKTINKVLLQ 828 (1283)
T ss_pred HhccchHHHHHHHHhHhhcccccCccccchhhhhcchHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999996 48999999999999999999999999999999999953 45689999999999999
Q ss_pred HHHHHHhhccCCcccCCCCCccccccCCCchhHHH-hhhcCCCCcccccccccccCCccccccCcceEEeccHHHHHHHH
Q 003434 501 YVTKAKSGCGSRNTYVPTMPALTRCTTGSKFQGVW-KKKEKSPNSQKKNSQVATMNGEISFRVPQLCIRINSFHRIKSEL 579 (820)
Q Consensus 501 Y~~~v~~~~~~k~~~~p~~P~lTr~~~~~~~~~~~-Kkk~~~~~~~e~~~~~~~~~~~~s~~~~~lCVrLNnLe~i~~~L 579 (820)
|++++. +.|.+.. |.|+ .||.+||.+++|.||
T Consensus 829 yadivs----------------------kdfp~y~~kekl-------------------------pcilmnnvqqlrvql 861 (1283)
T KOG1011|consen 829 YADIVS----------------------KDFPKYCHKEKL-------------------------PCILMNNVQQLRVQL 861 (1283)
T ss_pred HHHHHh----------------------hhhhhhhhhccC-------------------------CeeeeccHHHHHHHH
Confidence 999993 2221111 2221 299999999999999
Q ss_pred HHHHHHHHhhhcccccccc------c--ccccccccccccc-HHHHHHHHHHHHHHHhhhHhhcccchhhhcccccCCCC
Q 003434 580 DVLEKRVITHLRNCESAHA------E--DFSNGLGKKFELT-PAACVEGVQQLSEAVAYKIVFHDLSHVLWDGLYVGEPS 650 (820)
Q Consensus 580 ~~Lek~i~~~~~~~~s~~~------~--~~~~~l~~~F~~s-~~~~~~~i~~l~e~~a~klvf~Dl~~~~~~~Ly~~~v~ 650 (820)
+++.+.|.+.-.+...+.. + +..|.++..|..+ +..|.+++.||++++. ++.+ .-..-..+...+
T Consensus 862 ekmfeamggkeld~ea~d~lk~lqvkln~vldels~~f~tsfqphi~e~v~qmg~il~-qvkg-----t~~a~~sva~da 935 (1283)
T KOG1011|consen 862 EKMFEAMGGKELDEEAGDVLKELQVKLNSVLDELSAVFVTSFQPHIHECVIQMGDILV-QVKG-----TGLAKTSVAQDA 935 (1283)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHh-hhcc-----cccchhhcccch
Confidence 9999998654332221111 1 1255778888776 8889999999998775 2322 111112233346
Q ss_pred ccchHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHH-h--------------------------------
Q 003434 651 SSRIEPLLQELERNLLIISDTVHERVRTRIITDIMKASFDGFLLVL-L-------------------------------- 697 (820)
Q Consensus 651 ~~rI~PlL~~Ld~~L~~l~~~l~~~~~~rvl~~l~ka~~e~~l~VL-L-------------------------------- 697 (820)
|+.++|+|+.||++|..+++.|++++.+||++++||.++..+++.+ |
T Consensus 936 d~vl~plmdlldgnlt~fa~~cektvlk~vlkelwkivm~tmek~ivlppltdqt~~~~l~~~ki~~~t~~tq~~f~aak 1015 (1283)
T KOG1011|consen 936 DAVLEPLMDLLDGNLTLFADQCEKTVLKRVLKELWKIVMNTMEKRIVLPPLTDQTLLKQLPNAKIGDVTKLTQTIFQAAK 1015 (1283)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCCcchhHHhccccccccchhhHHHHHHHHHH
Confidence 8889999999999999999999999999999999999999999843 2
Q ss_pred -----------cCCCCCCCChhhHHHHHHHHHHHHHHhhhCCCCCcHHHhHHh--HHHHHhhcccccCChHHHHHHHHHH
Q 003434 698 -----------AGGPSRAFTRQDSQIIEDDFKSLKDLFWANGDGLPIELIDKF--SATARGVLPLFRTDTESLIERFRRV 764 (820)
Q Consensus 698 -----------~gGpsR~fs~~d~~~le~dL~~Lk~fF~A~GeGLp~elve~~--~~~l~~vL~L~~~~Td~LIe~f~~~ 764 (820)
.....|+++|++|..++-+|++||+||||+|.||++.++|++ .++++++|+||+|+||+||+.|++.
T Consensus 1016 ~l~lsk~k~hmvree~ksltpkqcavld~aldtikq~fhagg~glkktflekspdlqslryalslytqttd~liktfv~s 1095 (1283)
T KOG1011|consen 1016 ELNLSKLKDHMVREEEKSLTPKQCAVLDLALDTIKQYFHAGGKGLKKTFLEKSPDLQSLRYALSLYTQTTDQLIKTFVTS 1095 (1283)
T ss_pred hcchhhHHHHHHHHHhccCCccceehhhhhHHHHHHHHhccCcchhhhHhhcCccHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 123468999999999999999999999999999999999997 7999999999999999999999876
Q ss_pred H
Q 003434 765 T 765 (820)
Q Consensus 765 ~ 765 (820)
-
T Consensus 1096 q 1096 (1283)
T KOG1011|consen 1096 Q 1096 (1283)
T ss_pred h
Confidence 5
No 3
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-32 Score=305.05 Aligned_cols=525 Identities=16% Similarity=0.212 Sum_probs=351.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhhhhcC-CCchhHHhHHHHHHhHHHHHHHHHhhhHhhhcCCCh
Q 003434 162 MLHNMCFTWVLFHRFVATGQADTDLLYAADNQLAEVAKDAKAT-KDPEYAKILSSTLTSIMSWAEKRLLAYHDTFDDGNL 240 (820)
Q Consensus 162 ~~h~vcf~wVlf~qfv~t~e~e~~lL~~a~~~l~ev~~d~k~~-~~~~~~~~l~s~l~~i~~W~~k~L~~yH~~f~~~~~ 240 (820)
.+|.++--|+.|.+-..+-.+++.+|...++=+..-= ...+ -+..--..|+-.+++-...+.+.+....|+|+..|.
T Consensus 365 dlhlAm~rw~a~~~~~~s~~ld~s~L~~lL~di~~~W--~~~~qL~~e~E~~LaDs~s~F~e~~l~~~r~hRd~Fpa~n~ 442 (1103)
T KOG1328|consen 365 DLHLAMCRWLAFHSMIHSIDLDFSLLYKLLQDIIDKW--QPLTQLDKEEEDMLADSFSSFDEYCLRMMREHRDKFPASNR 442 (1103)
T ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhh--cCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 6899999999999999888888888876554433200 1111 122223445666677777777888888899998776
Q ss_pred HHHhHHHHHHHHHhhhhhccchhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHH
Q 003434 241 ETMDGIVSLGVSSAKILTEDISNEYRRRRKGEVDVPRSRVETYIRSSLRTAFAQRMEKADSSRRASKNQPNPLPVLAILA 320 (820)
Q Consensus 241 ~~m~~~~~v~~~~~~~l~ed~~~~~~~~~~~~~~~~~~~v~~yI~~s~~~af~~~l~~~~~~~~~~~~~~~~~~~l~~La 320 (820)
...+.+-++.--+++.-..-+.+.+-|=. ..+...|...++.+.+.-|+++|+...+.. .+..++ ++
T Consensus 443 ~s~~rle~LlkClg~L~~~~~~~~~cPf~----~~~~~~~~~al~kg~~~w~dr~~~~~q~~~-------~p~l~~--~~ 509 (1103)
T KOG1328|consen 443 NSGERLESLLKCLGALRESPFYQKYCPFK----RPFHAHLESALVKGAEDWIDRSIESVQDPD-------PPKLLL--QL 509 (1103)
T ss_pred chHHHHHHHHHHHHHHhcCcchHhhCCCC----ccchHHHHHHHHhhhHHHHHHHHhccCCCC-------CchhHH--HH
Confidence 65544433333333322222222222111 246678999999999999999999766553 222222 22
Q ss_pred HHHHHHHHHHhhhccchhhhccCccccccHHHHHHHHHhHHHHHHHHhhh-hcHHH-----------HHHhhh-----hh
Q 003434 321 KDVGELAIKERRVFSPILKRWHPLAAGVAVATLHACYGNEIKQFISSIVE-LTPDA-----------VQVLRA-----AD 383 (820)
Q Consensus 321 ~~i~~la~~e~~~ysPiL~~~~p~a~~Vaa~~Lh~lyg~~Lk~~l~~~~~-lt~~~-----------~~vl~a-----ad 383 (820)
-.|..-..--...|..++... .+| ..|.-.+++|-.-+.+ ++.+. .++.++ ++
T Consensus 510 ~~i~~d~q~~~~~Yaalf~~v----~~i------dyf~lt~~q~drlv~Ee~~s~~~~~~~~~~~sq~~ls~~~~~pv~~ 579 (1103)
T KOG1328|consen 510 LNIVNDQQSRFLHYAALFREV----ARI------DYFQLTLNQFDRLVTEELTSELMSEKKMDLKSQMRLSAAQDPPVED 579 (1103)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----hcc------ceeeeeHHHHHHHHHHHHHHHHhchhhhhhhhhhhcccccCCCccc
Confidence 222221111123343333222 111 1112223333222211 11111 112111 11
Q ss_pred H-HHHHHH-----HHhhhcccCCCCCcccccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCCC
Q 003434 384 K-LEKDLV-----QIAVEDSVDSDDGGKAIIREMPPYEAEGAIANLVKMWLKTRIDRLKEWVDRNLQQEDWNPQQNQEGF 457 (820)
Q Consensus 384 ~-Lek~L~-----~i~~e~~~~~~d~~~~~~~~l~P~~ie~~f~~~V~~Wl~~~~~k~~ewV~rAie~E~w~P~s~~~~h 457 (820)
+ +|-+|. +... +- -+ .-+|.+---+..+||.|-|+.|++...+|...+|+.|++.|.-.|.+...||
T Consensus 580 ~lfeL~l~l~~f~~l~~--~~---~a--~~~r~lals~~ha~F~p~ik~w~~V~k~kAl~Rv~~a~~mD~~~~~~~~~Rh 652 (1103)
T KOG1328|consen 580 DLFELMLILMAFVELRN--YR---LA--NRVRVLALSEWHAIFNPGIKKWLEVAKEKALARVHLACQMDMPISTSSDMRH 652 (1103)
T ss_pred cHHHHHHHHHHHHHHHh--hc---cc--CCCcchhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHhccCCccccchhhcc
Confidence 2 443332 2210 00 00 0011111123578999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHhCCCCCCCcCch----HHHHHHHHHHHHHHHHHHHhhccCCcccCCCCCccccccCCCchhH
Q 003434 458 ASSAVEVLRIIDETLDAFFQLPIPMHPALL----PDLMAGLDRCLQYYVTKAKSGCGSRNTYVPTMPALTRCTTGSKFQG 533 (820)
Q Consensus 458 S~SvVDvf~~~~etvd~f~~L~wp~~~~~l----~~L~~gi~~~l~~Y~~~v~~~~~~k~~~~p~~P~lTr~~~~~~~~~ 533 (820)
|+|.||+-.++.++.++|..|+||+ +... +-|.+-+..+.-.||+.+....+..+.+
T Consensus 653 SSS~~d~~~~l~~i~efW~rl~wpD-~~~ai~~~~QL~dvVCea~~~Yt~li~sa~~dtq~~------------------ 713 (1103)
T KOG1328|consen 653 SSSHIDICHILEQITEFWERLDWPD-AGLAIEYTRQLVDVVCEAVTVYTQLIISAEGDTQEL------------------ 713 (1103)
T ss_pred ccchhhHHHHHHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh------------------
Confidence 9999999999999999999999995 3222 4566666667777777774322211111
Q ss_pred HHhhhcCCCCcccccccccccCCccccccCcceEEeccHHHHHHHHHHHHHHHHhhhccccccccccc-ccccccccccc
Q 003434 534 VWKKKEKSPNSQKKNSQVATMNGEISFRVPQLCIRINSFHRIKSELDVLEKRVITHLRNCESAHAEDF-SNGLGKKFELT 612 (820)
Q Consensus 534 ~~Kkk~~~~~~~e~~~~~~~~~~~~s~~~~~lCVrLNnLe~i~~~L~~Lek~i~~~~~~~~s~~~~~~-~~~l~~~F~~s 612 (820)
+ . ..++.-..-+||.+||.||+|.-++.-+|.. -|..+.-..+ +- ...+....+..
T Consensus 714 ------------~------a--~~p~~~s~~lCv~iNNvE~VRrsl~~~~k~~--~~p~~~~~~~-~~l~~~~~n~les~ 770 (1103)
T KOG1328|consen 714 ------------Q------A--FIPSQLSHLLCVAINNVEQVRRSLNITEKLH--MDPRSRLNGN-HMLKSEIENRLESC 770 (1103)
T ss_pred ------------h------h--cChHHHHHHHHHHHccHHHHHHHHhHHhhhc--cCcccccCcc-ccCchHHHHHHHHH
Confidence 0 0 1223334568999999999999999888866 4543211101 00 11344555666
Q ss_pred HHHHHHHHHHHHHHHhhhHhhcccchhhhcccccCCC--CccchHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHH
Q 003434 613 PAACVEGVQQLSEAVAYKIVFHDLSHVLWDGLYVGEP--SSSRIEPLLQELERNLLIISDTVHERVRTRIITDIMKASFD 690 (820)
Q Consensus 613 ~~~~~~~i~~l~e~~a~klvf~Dl~~~~~~~Ly~~~v--~~~rI~PlL~~Ld~~L~~l~~~l~~~~~~rvl~~l~ka~~e 690 (820)
...+.+.|+++...++-||+. +|+++++|..|+++. .+++|.|||+|||-+|..++++|..++++||+..+|+.++.
T Consensus 771 ~~~~~~e~~ri~~~Lt~~m~~-~~~K~vfHlawSPds~~~~~a~~PL~~yLD~~La~ln~~Ll~~Nf~Rvl~a~w~~vl~ 849 (1103)
T KOG1328|consen 771 ESNICSEIDRIVGLLTERMLP-QMKKHVFHLAWSPDSQLVEDALKPLTDYLDIELASLNKNLLHRNFLRVLSAQWSIVLK 849 (1103)
T ss_pred HHHHHHHHHHHHHHhhHHhhH-HHHHHHHheecCccccchhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 777888889999999999997 999999999999886 58899999999999999999999999999997766666655
Q ss_pred HHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHhhhCCCCCcHH-HhHHhHHHHHhhcccccCChHHHHHHHHHH
Q 003434 691 GFLLVLLAGGPSRAFTRQDSQIIEDDFKSLKDLFWANGDGLPIE-LIDKFSATARGVLPLFRTDTESLIERFRRV 764 (820)
Q Consensus 691 ~~l~VLL~gGpsR~fs~~d~~~le~dL~~Lk~fF~A~GeGLp~e-lve~~~~~l~~vL~L~~~~Td~LIe~f~~~ 764 (820)
.+ .-.-|..+..++.++.++.++|+.|.+||||+|+||+.| +.++.+..++++|+|++++|++|||+|+.-
T Consensus 850 ~l---~~~~g~n~d~~~~Fy~Rl~eal~~Lv~FFHAeGqGL~le~L~t~~~~rl~~~L~lhkt~T~~lIe~fY~d 921 (1103)
T KOG1328|consen 850 LL---RECVGENVDMEPAFYHRLFEALHVLVEFFHAEGQGLSLEALDTNPEHRLVKILSLHKTPTEQLIEKFYKD 921 (1103)
T ss_pred HH---HHHhcccCCCChHHHHHHHHHHHHHHHHHhccCCCcchHhhccCcHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 54 234488999999999999999999999999999999888 666779999999999999999999999743
No 4
>PF10540 Membr_traf_MHD: Munc13 (mammalian uncoordinated) homology domain; InterPro: IPR019558 Mammalian uncoordinated homology 13 (Munc13) proteins constitute a family of three highly homologous molecules (Munc13-1, Munc13-2 and Munc13-3) with homology to Caenorhabditis elegans unc-13p. Munc13 proteins contain a phorbol ester-binding C1 domain and two C2 domains, which are Ca2+/phospholipid binding domains. Sequence analyses have uncovered two regions called Munc13 homology domains 1 (MHD1) and 2 (MHD2) that are arranged between two flanking C2 domains. MHD1 and MHD2 domains are present in a wide variety of proteins from Arabidopsis thaliana (Mouse-ear cress), C. elegans, Drosophila melanogaster (Fruit fly), Mus musculus (Mouse), Rattus norvegicus (Rat) and Homo sapiens (Human), some of which may function in a Munc13-like manner to regulate membrane trafficking. The MHD1 and MHD2 domains are predicted to be alpha-helical. ; PDB: 3SWH_A.
Probab=99.87 E-value=1.9e-22 Score=195.11 Aligned_cols=111 Identities=32% Similarity=0.580 Sum_probs=82.2
Q ss_pred ccchHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHH-hc-----------------------CCCCCCCC
Q 003434 651 SSRIEPLLQELERNLLIISDTVHERVRTRIITDIMKASFDGFLLVL-LA-----------------------GGPSRAFT 706 (820)
Q Consensus 651 ~~rI~PlL~~Ld~~L~~l~~~l~~~~~~rvl~~l~ka~~e~~l~VL-L~-----------------------gGpsR~fs 706 (820)
+++|.|||+|||.+|.+++++|.+++++||++++|+.++.++...+ +. +|..|.++
T Consensus 1 e~ai~PL~dyLd~nL~~L~~~L~~~~f~~vl~~lW~~vl~~l~~llvlP~ls~~~~~~~~~~~~~~~~~~~~~~~~~~Lt 80 (137)
T PF10540_consen 1 EDAIEPLMDYLDSNLSILASNLEKENFKRVLKELWKVVLETLEELLVLPPLSDKPMLGLLQSAVSSLSSHGIGGSQRPLT 80 (137)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHTTS-G------------GG-TTS------------
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHhhcccccCCCCC
Confidence 4679999999999999999999999999999999999999999887 42 36789999
Q ss_pred hhhHHHHHHHHHHHHHHhhhCCCCCcHHHhHH--hHHHHHhhcccccCChHHHHHHH
Q 003434 707 RQDSQIIEDDFKSLKDLFWANGDGLPIELIDK--FSATARGVLPLFRTDTESLIERF 761 (820)
Q Consensus 707 ~~d~~~le~dL~~Lk~fF~A~GeGLp~elve~--~~~~l~~vL~L~~~~Td~LIe~f 761 (820)
+.+|++++.+|+.|++||||||+|||.+.+|+ .|+.+++++.||+++|++||++|
T Consensus 81 ~~q~~~l~~~L~~L~~FFhA~G~Gl~~~~L~ks~~yq~L~~~l~ly~~sT~~LI~~f 137 (137)
T PF10540_consen 81 PKQCDRLFKWLDTLKDFFHAEGNGLPLEFLEKSPEYQSLRYILSLYDQSTDELIEEF 137 (137)
T ss_dssp -TCHHHHHHHHHHHHHHHHCCCTS--HHHHHC-HHHHHHHHHHHHT-----------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCHHHHccCHHHHHHHHHHHHhcCCHHHHHhhC
Confidence 99999999999999999999999999998844 59999999999999999999987
No 5
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=98.93 E-value=1.4e-08 Score=120.17 Aligned_cols=330 Identities=15% Similarity=0.206 Sum_probs=212.4
Q ss_pred ccCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhccCC--c----ccC-C-CCCCCcccHHHHHHHHHHHHHHHhCCCC
Q 003434 409 REMPPYEAEGAIANLVKMWLKTRIDRLKEWVDRNLQQED--W----NPQ-Q-NQEGFASSAVEVLRIIDETLDAFFQLPI 480 (820)
Q Consensus 409 ~~l~P~~ie~~f~~~V~~Wl~~~~~k~~ewV~rAie~E~--w----~P~-s-~~~~hS~SvVDvf~~~~etvd~f~~L~w 480 (820)
..+.|-=.++....++..++.....++.+|+++++++|. | .|. + +...|++..+|||+|++|.++... +.
T Consensus 190 ~~l~plL~~~~~~~L~~~Yl~~~~~~~~eW~~n~l~~E~~~w~~~~~Pe~~~dg~y~t~~~~difqmi~qql~va~--~~ 267 (566)
T PF06046_consen 190 EQLGPLLPDEKLEELEDDYLSRIQKKMKEWMDNILEQEVKDWSEEKEPEEDEDGYYHTPLPVDIFQMINQQLDVAS--ES 267 (566)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-S--EE-TTS-EE-HHHHHHHHHHHHHHHHHH--HT
T ss_pred hhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCCeecCcHHHHHHHHHHHHHHHH--hh
Confidence 345566567778999999999999999999999999973 4 444 2 233588899999999999999991 11
Q ss_pred CCCcCchHHHHHHHHHHHHHHHHHHHhhccCCcccCCCCCccccccCCCchhHHHhhhcCCCCcccccccccccCCcccc
Q 003434 481 PMHPALLPDLMAGLDRCLQYYVTKAKSGCGSRNTYVPTMPALTRCTTGSKFQGVWKKKEKSPNSQKKNSQVATMNGEISF 560 (820)
Q Consensus 481 p~~~~~l~~L~~gi~~~l~~Y~~~v~~~~~~k~~~~p~~P~lTr~~~~~~~~~~~Kkk~~~~~~~e~~~~~~~~~~~~s~ 560 (820)
....++....+.+...+..|-..+.... .+-+++...+. + +.....
T Consensus 268 -l~~~v~~~v~~~~~~~l~~~~~~~~~~~----------------------~~~~~~~~~~~--~---------~~~~~~ 313 (566)
T PF06046_consen 268 -LQGKVLQRVLEELANFLKSYQDAWQEFK----------------------EEHFKDRSSVK--P---------KENPPG 313 (566)
T ss_dssp -T-HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHH--H---------CC--S-
T ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHhhhccc--c---------cccccc
Confidence 1455666777777777777766663211 00111110000 0 001122
Q ss_pred ccCcceEEeccHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccHHHHHHHHHHHHHHHhhhHhhcccchhh
Q 003434 561 RVPQLCIRINSFHRIKSELDVLEKRVITHLRNCESAHAEDFSNGLGKKFELTPAACVEGVQQLSEAVAYKIVFHDLSHVL 640 (820)
Q Consensus 561 ~~~~lCVrLNnLe~i~~~L~~Lek~i~~~~~~~~s~~~~~~~~~l~~~F~~s~~~~~~~i~~l~e~~a~klvf~Dl~~~~ 640 (820)
..+-+|..+||-...+..++.++..+......... ..+...|+.+.....+...+.+..+. ..+|.|++..|
T Consensus 314 ~~eyliA~~N~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~L~-~~if~Dl~p~~ 385 (566)
T PF06046_consen 314 YLEYLIAVANNCLRCRDYVESLEQKFEEKVSQKYM-------ERISSDLEELMDGFDDLAKECCQYLL-EEIFNDLKPHF 385 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHH-------HHHHHHHCTTHHHHHHHHHHHHHHHH-HHHHHCTHHHH
T ss_pred hHHHHHHHhccHHHHHHHHHHHHHhcccccchHHH-------hhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHH
Confidence 33567899999999999999988876432221100 12345566666666665555555554 34667988766
Q ss_pred hcccccCCCCccchHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHhcCCCC---CCCChhhHHHHHHHH
Q 003434 641 WDGLYVGEPSSSRIEPLLQELERNLLIISDTVHERVRTRIITDIMKASFDGFLLVLLAGGPS---RAFTRQDSQIIEDDF 717 (820)
Q Consensus 641 ~~~Ly~~~v~~~rI~PlL~~Ld~~L~~l~~~l~~~~~~rvl~~l~ka~~e~~l~VLL~gGps---R~fs~~d~~~le~dL 717 (820)
-......=..++.++.++..++..+.-+...+.+..+..++.++...++..++..|+.+... +.-..+-.+.|..|.
T Consensus 386 ~~Lft~~W~~~~~~~~I~~Ti~dY~~d~~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D~ 465 (566)
T PF06046_consen 386 KKLFTKKWYSGEAVDTICATIEDYLQDFQHYLRPPYFQELIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRDA 465 (566)
T ss_dssp CTTTSGGGCTS-HHHHHHHHHHHHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHHH
T ss_pred HHhCcCcCcCcchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHH
Confidence 33221111123888999999999999999999999999999999999999999999976531 333455679999999
Q ss_pred HHHHHHhhhCCCCCcHHHhHHhHHHHHhhcccc-cCChHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcccchh
Q 003434 718 KSLKDLFWANGDGLPIELIDKFSATARGVLPLF-RTDTESLIERFRRVTLETYGSSARSRLPLPPTSGQWNPTEPNTLLR 796 (820)
Q Consensus 718 ~~Lk~fF~A~GeGLp~elve~~~~~l~~vL~L~-~~~Td~LIe~f~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~tilR 796 (820)
+.|++||-.-| ..+.+......+..++.+. ..+++.+...+..... .. ..-..+-|..
T Consensus 466 ~~l~~~F~~~~---~~~~~~~~~~~l~~l~~ll~~~d~~~i~l~~~~l~~---------~y---------pD~~~~~v~a 524 (566)
T PF06046_consen 466 EQLKSFFSKLG---SKSEVKSSFDVLEDLLELLRLEDPEMIKLEVSSLLQ---------KY---------PDISEEHVEA 524 (566)
T ss_dssp HHHHHHHHHHT---HHHHHHHHHHHHHHHHHHH-HS-CCCHHHHHHHHHC---------C----------TT--SHHHHH
T ss_pred HHHHHHHHHhc---ccccccchHHHHHHHHHHHhcCCHHHHHHHHHHHHH---------hC---------CCCCHHHHHH
Confidence 99999999988 6667778888899999988 6667766655554432 11 1244678899
Q ss_pred hhcccCC
Q 003434 797 VLCYRND 803 (820)
Q Consensus 797 VLchR~D 803 (820)
||.-|.|
T Consensus 525 lL~~R~D 531 (566)
T PF06046_consen 525 LLALRGD 531 (566)
T ss_dssp HHCT-TT
T ss_pred HHHhccC
Confidence 9999975
No 6
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.16 Score=60.39 Aligned_cols=323 Identities=14% Similarity=0.215 Sum_probs=178.3
Q ss_pred HHHHHHhHHHH-HHHHHhhhHhhhcCCChH----HHhHH---HHHHHHHhhhhhccchhhhhhhccCCCCchhhHHHHHH
Q 003434 213 LSSTLTSIMSW-AEKRLLAYHDTFDDGNLE----TMDGI---VSLGVSSAKILTEDISNEYRRRRKGEVDVPRSRVETYI 284 (820)
Q Consensus 213 l~s~l~~i~~W-~~k~L~~yH~~f~~~~~~----~m~~~---~~v~~~~~~~l~ed~~~~~~~~~~~~~~~~~~~v~~yI 284 (820)
|++-++.+++= ..+...||-..|..+..+ .|+.+ +-|+-+ + ||+ +-.+.|+.||
T Consensus 177 Ls~si~~~k~~l~~qi~~df~~~F~~~~~~~~~~~l~~l~daC~v~d~----l--eps------------vreelIkwf~ 238 (793)
T KOG2180|consen 177 LSESIDKLKKSLLSQIFQDFKAAFSGGETHEEALLLQKLSDACLVVDA----L--EPS------------VREELIKWFC 238 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHH----h--CCc------------cHHHHHHHHH
Confidence 44555555543 448889999999988751 22222 322221 1 111 2235577888
Q ss_pred HHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHHHHhhhccchhhh-ccCccccccHHHHHHHHHhHHHH
Q 003434 285 RSSLRTAFAQRMEKADSSRRASKNQPNPLPVLAILAKDVGELAIKERRVFSPILKR-WHPLAAGVAVATLHACYGNEIKQ 363 (820)
Q Consensus 285 ~~s~~~af~~~l~~~~~~~~~~~~~~~~~~~l~~La~~i~~la~~e~~~ysPiL~~-~~p~a~~Vaa~~Lh~lyg~~Lk~ 363 (820)
+.-+.+ |.++... +...+.+ ++..-.-+ -++.+...=-..|.|+|=. || .+..+ ...+..-=-++|..
T Consensus 239 ~qqL~e-y~~IF~e-n~E~a~L---DkidrRY~----wfKr~L~~fe~k~~~iFP~dW~-v~~RL-t~eFc~~Tr~~L~~ 307 (793)
T KOG2180|consen 239 SQQLEE-YEQIFRE-NEEAASL---DKLDRRYA----WFKRLLRDFEEKWKPIFPADWH-VAYRL-TIEFCHQTRKQLES 307 (793)
T ss_pred HHHHHH-HHHHHhc-cHhhhhh---hhHHHHHH----HHHHHHHHHHHhccccCCcccc-hhHHH-HHHHHHHHHHHHHH
Confidence 766554 4444332 1111111 11111111 1233333333567776633 77 44444 22222223355666
Q ss_pred HHHHhhh-hc-HHHHHHhhhhhHHHHHHHHHhhhcccC--CCCCcccccccCCCcc--chhhhHHHHHHHHHHHHHHHHH
Q 003434 364 FISSIVE-LT-PDAVQVLRAADKLEKDLVQIAVEDSVD--SDDGGKAIIREMPPYE--AEGAIANLVKMWLKTRIDRLKE 437 (820)
Q Consensus 364 ~l~~~~~-lt-~~~~~vl~aad~Lek~L~~i~~e~~~~--~~d~~~~~~~~l~P~~--ie~~f~~~V~~Wl~~~~~k~~e 437 (820)
.|.+..+ +. .=.+-.++..-.+|++|-.-+..+... .+++++-.-++-++|+ +.+.|+|++.-||+.+...+.+
T Consensus 308 Il~~~~~~~~v~lll~Alq~TleFE~~L~kRF~g~~~~~~~~~ns~~~~k~~~~f~~~isScFEPhLtlyI~~qek~l~e 387 (793)
T KOG2180|consen 308 ILKRRKKEPDVKLLLFALQSTLEFEKFLDKRFSGGTLTGKPEKNSQFEPKERFNFEGAISSCFEPHLTLYIESQEKELSE 387 (793)
T ss_pred HHHHhhhCccHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccccccchhhHHHHhcccchhhhhhHHHHHHHH
Confidence 6555432 22 112223344446888886544211111 1122221112235665 7899999999999999999999
Q ss_pred HHHhhhccCCcc--cCCCCCCC---cccHHHHHHHHHHHHHHHhCCCCCCCcCchHHHHHHHHHHHHHHHHHHHhhccCC
Q 003434 438 WVDRNLQQEDWN--PQQNQEGF---ASSAVEVLRIIDETLDAFFQLPIPMHPALLPDLMAGLDRCLQYYVTKAKSGCGSR 512 (820)
Q Consensus 438 wV~rAie~E~w~--P~s~~~~h---S~SvVDvf~~~~etvd~f~~L~wp~~~~~l~~L~~gi~~~l~~Y~~~v~~~~~~k 512 (820)
.+++-++.++|. |.++.+-+ =+|..|+|...+-++-+..+|.=.. .-+. ++..-+.+.++.|+..+.
T Consensus 388 llek~v~e~~~~~~p~~~~~~~s~vlpSsadlF~~Ykkcltq~~~Ls~n~-dpl~-~~~~~f~k~LreYa~kil------ 459 (793)
T KOG2180|consen 388 LLEKFVSEEKWDGEPKSNTDEESLVLPSSADLFVAYKKCLTQCSELSENN-DPLI-ALLAVFSKWLREYAQKIL------ 459 (793)
T ss_pred HHHHHHhhhccCCCCCCCcccccccCccHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHh------
Confidence 999999999996 65533323 3677899999999999999998542 2233 334488899999998884
Q ss_pred cccCCCCCccccccCCCchhHHHh-hhcCCCCcccccccccccCCccccccCcceEEeccHHHHHHHHHHHHHHHHh
Q 003434 513 NTYVPTMPALTRCTTGSKFQGVWK-KKEKSPNSQKKNSQVATMNGEISFRVPQLCIRINSFHRIKSELDVLEKRVIT 588 (820)
Q Consensus 513 ~~~~p~~P~lTr~~~~~~~~~~~K-kk~~~~~~~e~~~~~~~~~~~~s~~~~~lCVrLNnLe~i~~~L~~Lek~i~~ 588 (820)
.|.+|..|-..-+....-+++ .....+.+ + ++ ..-..|.++|+.+|....--.+|+++.+
T Consensus 460 ---~~~lP~~t~~s~g~~v~~l~~~e~~~~~~~--------t--~d---~l~di~~~lst~e~~~~tt~qle~kl~e 520 (793)
T KOG2180|consen 460 ---LGNLPDTTSSSDGAAVYLLLRIEGAEYCRF--------T--ID---QLLDICCILSTAEYCLATTIQLEKKLKE 520 (793)
T ss_pred ---hccCCcccccccCchhhhHHHhhhhhhhcc--------c--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 244665554332221111122 11111110 0 00 0123499999999999988888887644
No 7
>PF06292 DUF1041: Domain of Unknown Function (DUF1041); InterPro: IPR010439 This entry represents Calcium-dependent secretion activators that are involved in the exocytosis of vesicles filled with neurotransmitters and neuropeptides. They also may specifically mediate the Ca2+-dependent exocytosis of large dense-core vesicles (DCVs) and other dense-core vesicles by acting as a PtdIns(4,5)P2-binding protein that acts at prefusion step following ATP-dependent priming and participates in DCVs-membrane fusion []. However, it probably also participates in small clear synaptic vesicles (SVs) exocytosis and it is unclear whether its function is related to Ca2+ triggering []. This protein is often found in tandem repeats and co-occur with C2 domains IPR000008 from INTERPRO, Protein kinase C, phorbol ester/diacylglycerol binding regions IPR002219 from INTERPRO and PH domains IPR001849 from INTERPRO.
Probab=97.78 E-value=6.2e-05 Score=69.89 Aligned_cols=90 Identities=7% Similarity=0.128 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccccc-------ccc--C---CCCCHHHHHHHHHHHHHHHHHHhhhccchhhhcc--C
Q 003434 278 SRVETYIRSSLRTAFAQRMEKADSSRR-------ASK--N---QPNPLPVLAILAKDVGELAIKERRVFSPILKRWH--P 343 (820)
Q Consensus 278 ~~v~~yI~~s~~~af~~~l~~~~~~~~-------~~~--~---~~~~~~~l~~La~~i~~la~~e~~~ysPiL~~~~--p 343 (820)
.-|..|++.++...|+++.+.+.-... ... . .......+..||.-+.++++.+++.|+|+|++|. |
T Consensus 2 ~VVr~Cle~aa~~nY~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~Le~w~~L~eL~v~vleed~e~y~~vln~F~~~~ 81 (106)
T PF06292_consen 2 NVVRKCLEAAALSNYQRIFENCKEEYNRQFQQKEDVGPEEQGPPIKKLEFWIRLIELCVSVLEEDKEHYAPVLNQFPWEL 81 (106)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccCccCCCChhHhHHHHHHHHHHHHHHHHhhhhhhhhHhhhchhhh
Confidence 457888888888889887765332210 000 0 0112355668888999999999999999999964 3
Q ss_pred ccccccHHHHHHHHHhHHHHHHHH
Q 003434 344 LAAGVAVATLHACYGNEIKQFISS 367 (820)
Q Consensus 344 ~a~~Vaa~~Lh~lyg~~Lk~~l~~ 367 (820)
..+.++|.++|.+|+.||+..|+.
T Consensus 82 ~l~~~hAE~fWsLfa~Dm~~aLee 105 (106)
T PF06292_consen 82 DLGVEHAEIFWSLFAVDMDAALEE 105 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHc
Confidence 699999999999999999999875
No 8
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=97.55 E-value=0.0086 Score=69.18 Aligned_cols=323 Identities=15% Similarity=0.190 Sum_probs=190.3
Q ss_pred HHHHHHHHHh--hccCCC----ccchHhHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHhhcCC-CChhhHHHHHHH
Q 003434 121 RLYEMLLEAC--FDSSYE----TSIIEEVDELMEQIKKTWVILGMNQMLHNMCFTWVLFHRFVATGQ-ADTDLLYAADNQ 193 (820)
Q Consensus 121 rlY~~LL~~~--fD~~de----~~l~~e~dElLe~lk~tW~~LgI~~~~h~vcf~wVlf~qfv~t~e-~e~~lL~~a~~~ 193 (820)
++|..+-... |-++|. |-++----=+|++-|-+.. +--.-|++||+--|..+-- .|- |||.||.-.|++
T Consensus 610 ~lf~~vqrltldhrlndsysclgwfspgqvfvldeycaryg---vrgchrhlcyl~~lle~ae-nga~idptllhysfaf 685 (1218)
T KOG3543|consen 610 HLFSDVQRLTLDHRLNDSYSCLGWFSPGQVFVLDEYCARYG---VRGCHRHLCYLSNLLEKAE-NGALIDPTLLHYSFAF 685 (1218)
T ss_pred HHHHHHHHHhhhhhcCCcchhccccCCCceeeeHHHHHHhh---hhhHHHHHHHHHHHHHhcc-CCcccChHHHHHHHHH
Confidence 4577766655 555555 2222222236777888887 5557889999998888875 444 899999999999
Q ss_pred HHH-HHhhhhc--------CCCchhHHhHHHHHHhHHHHHHHHHhhhHhhhcCCChH-HHhHHHHHHHHHhhhhhccchh
Q 003434 194 LAE-VAKDAKA--------TKDPEYAKILSSTLTSIMSWAEKRLLAYHDTFDDGNLE-TMDGIVSLGVSSAKILTEDISN 263 (820)
Q Consensus 194 l~e-v~~d~k~--------~~~~~~~~~l~s~l~~i~~W~~k~L~~yH~~f~~~~~~-~m~~~~~v~~~~~~~l~ed~~~ 263 (820)
-+. |.-+... .++.+ .-+---..--.+++...+.-.|+-|..+ .+...++ ++++.|-.|+..
T Consensus 686 cashvhgnrpdgigtvtveekerf-----eeikerlrvllenqithfrycfpfgrpegalkatls---llervlmkdivt 757 (1218)
T KOG3543|consen 686 CASHVHGNRPDGIGTVTVEEKERF-----EEIKERLRVLLENQITHFRYCFPFGRPEGALKATLS---LLERVLMKDIVT 757 (1218)
T ss_pred HHHhccCCCCCCcceeeehhHHHH-----HHHHHHHHHHHHhhhhceEeeccCCCcchHHHHHHH---HHHHHHHHhcCC
Confidence 753 2211100 01111 0000111122356666666677766543 3433333 356666665541
Q ss_pred hhhhhccCCCCchhhHHHHHHHHHHHHH----HHHHHHhccccccc---ccCCCCCHHHHHHHHHHHHHHHHHHhhhccc
Q 003434 264 EYRRRRKGEVDVPRSRVETYIRSSLRTA----FAQRMEKADSSRRA---SKNQPNPLPVLAILAKDVGELAIKERRVFSP 336 (820)
Q Consensus 264 ~~~~~~~~~~~~~~~~v~~yI~~s~~~a----f~~~l~~~~~~~~~---~~~~~~~~~~l~~La~~i~~la~~e~~~ysP 336 (820)
.+...-|..-||.++..| |+++.+-..-+... +.........+ .||.-+.++...--+...-
T Consensus 758 ----------pvp~eevk~virkcle~aalvnytrl~eyakiee~m~~a~~~a~kled~i-rlaelcievlqqneehhge 826 (1218)
T KOG3543|consen 758 ----------PVPPEEVKAVIRKCLEDAALVNYTRLCEYAKIEERMGIAVSPAQKLEDMI-RLAELCIEVLQQNEEHHGE 826 (1218)
T ss_pred ----------CCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCHHHHHHHHH-HHHHHHHHHHHhhhhhcch
Confidence 123344566666666555 66655432211110 00001112233 4555444444322233333
Q ss_pred hhhhccCccccccHHHHHHHHHhHHHHHHHHhhhhcHHHHHHhhhhhHHHHHHHHHhhhcccCCCCCcccccccCCCccc
Q 003434 337 ILKRWHPLAAGVAVATLHACYGNEIKQFISSIVELTPDAVQVLRAADKLEKDLVQIAVEDSVDSDDGGKAIIREMPPYEA 416 (820)
Q Consensus 337 iL~~~~p~a~~Vaa~~Lh~lyg~~Lk~~l~~~~~lt~~~~~vl~aad~Lek~L~~i~~e~~~~~~d~~~~~~~~l~P~~i 416 (820)
-|. |-|....=-|..+|.+|..||-..|+--.+ |.-..++--.-|+.+|.. |+ +++...|.-++
T Consensus 827 afa-wwsdll~ehae~fwslfsvdmdsalevqp~---dswdsfplfqllndflr~----d~--------~lcngkfhkhl 890 (1218)
T KOG3543|consen 827 AFA-WWSDLLSEHAEIFWSLFSVDMDSALEVQPH---DSWDSFPLFQLLNDFLRS----DS--------SLCNGKFHKHL 890 (1218)
T ss_pred HHH-hHHHHHHHHHHHHHHHHhcccchhcccCCC---CccccchHHHHHHHHHhh----hh--------hcccchhHHHH
Confidence 332 334333334789999999999877664432 333344444445555543 22 23333456678
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCCCcccHHHHHHHHHHHHHHHhCCCCCCCcCc
Q 003434 417 EGAIANLVKMWLKTRIDRLKEWVDRNLQQEDWNPQQNQEGFASSAVEVLRIIDETLDAFFQLPIPMHPAL 486 (820)
Q Consensus 417 e~~f~~~V~~Wl~~~~~k~~ewV~rAie~E~w~P~s~~~~hS~SvVDvf~~~~etvd~f~~L~wp~~~~~ 486 (820)
-..|.|+|-+.++--+.-+.+-++|-+++|+|+|+.+. |...-|+|=-++..--+.+.|.|| ..+|
T Consensus 891 q~~f~plvvryvdlmessiaqsihrgfe~e~wepvkng---satsedlfwkldalqtfv~dlhwp-eeef 956 (1218)
T KOG3543|consen 891 QQQFQPLVVRYVDLMESSIAQSIHRGFEKEKWEPVKNG---SATSEDLFWKLDALQTFVIDLHWP-EEEF 956 (1218)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhccchhhccccccCC---CcchHhHHHHHHHHHHHHhhcCCC-HHHH
Confidence 89999999999999999999999999999999999754 456679999999999999999999 3443
No 9
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=97.21 E-value=0.0026 Score=70.31 Aligned_cols=253 Identities=17% Similarity=0.146 Sum_probs=145.5
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHhCCCCCCCcCchHHHHHHHHHHHHHHHHHHHhhccCCcccCCCCCccccccCCCchh
Q 003434 453 NQEGFASSAVEVLRIIDETLDAFFQLPIPMHPALLPDLMAGLDRCLQYYVTKAKSGCGSRNTYVPTMPALTRCTTGSKFQ 532 (820)
Q Consensus 453 ~~~~hS~SvVDvf~~~~etvd~f~~L~wp~~~~~l~~L~~gi~~~l~~Y~~~v~~~~~~k~~~~p~~P~lTr~~~~~~~~ 532 (820)
..-+||+.+..+.+.++..++.+...-....- ... -++..+.+|.+.+.... +.
T Consensus 26 ~~lPFS~~vp~~c~~ir~fi~~~~~F~~~~~~-~~~----eid~~v~ks~d~lL~~~---------------------l~ 79 (311)
T PF04091_consen 26 KKLPFSQMVPMCCRQIRSFIEKCYKFSDDLYQ-SST----EIDDIVRKSLDRLLTRV---------------------LN 79 (311)
T ss_dssp --SSSBTHHHHHHHHHHHHHHHHHHHHHHTT---HH----HHHHHHHHHHHHHHHHH---------------------HH
T ss_pred eeCCCchHHHHHHHHHHHHHHHHHHHHHhccc-chH----HHHHHHHHHHHHHHHHH---------------------HH
Confidence 45579999999999999999998876543111 112 34556666776663111 23
Q ss_pred HHHhhhcCCCCcccccccccccCCccccccCcceEEeccHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccc
Q 003434 533 GVWKKKEKSPNSQKKNSQVATMNGEISFRVPQLCIRINSFHRIKSELDVLEKRVITHLRNCESAHAEDFSNGLGKKFELT 612 (820)
Q Consensus 533 ~~~Kkk~~~~~~~e~~~~~~~~~~~~s~~~~~lCVrLNnLe~i~~~L~~Lek~i~~~~~~~~s~~~~~~~~~l~~~F~~s 612 (820)
+.+++++.. + .+..+++-.+.|++|.-.....+|+-+...-....+. +.+.+......|..+
T Consensus 80 ~~L~~~i~~----------------~-~~l~qi~Qi~iNl~~le~Ac~~le~~l~~~~~~~~~~-~~~~~l~a~~~f~~~ 141 (311)
T PF04091_consen 80 GSLKSKIRS----------------S-LNLSQIVQIVINLEYLEKACKELEEFLSSLRGIPQSA-GGHIRLKATKMFKDA 141 (311)
T ss_dssp HHHHHHHT-----------------T-S-HHHHHHHHHHHHHHHTTHHHHHHHHHHHHT-----------------S---
T ss_pred HHHHHHHhc----------------C-CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCCCccc-hHhHhhhhHHHHHHH
Confidence 344555422 1 2335677788999999999999999775433211111 111233557888888
Q ss_pred HHHHHHHHHHHHHHHhhhHh-hcccchhhhcccccCCCCccchHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHH
Q 003434 613 PAACVEGVQQLSEAVAYKIV-FHDLSHVLWDGLYVGEPSSSRIEPLLQELERNLLIISDTVHERVRTRIITDIMKASFDG 691 (820)
Q Consensus 613 ~~~~~~~i~~l~e~~a~klv-f~Dl~~~~~~~Ly~~~v~~~rI~PlL~~Ld~~L~~l~~~l~~~~~~rvl~~l~ka~~e~ 691 (820)
+..+...|-.+. ..|+- |.++-.+=|..--..+-++.-|..++.||+...+..-.+|...++..+..+.++.+=+.
T Consensus 142 r~~Ae~~I~~lv---~~KIDe~lela~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~l~~LP~~v~~~~~~~a~~his~~ 218 (311)
T PF04091_consen 142 RKAAEKRIFELV---NSKIDEFLELAEYDWTPTEPPGEPSDYINDLIQFLETTFSSTLTNLPPSVKQLVYFSACDHISES 218 (311)
T ss_dssp TTHHHHHHHHHH---HHHHHHHHTT--TT--------S--HHHHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHhhcccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 876666655444 34553 33444332333333344677899999999999988889999999999999999999999
Q ss_pred HHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHhhhC-CCCCcHHHhHHhHHHHHhhcccccCC
Q 003434 692 FLLVLLAGGPSRAFTRQDSQIIEDDFKSLKDLFWAN-GDGLPIELIDKFSATARGVLPLFRTD 753 (820)
Q Consensus 692 ~l~VLL~gGpsR~fs~~d~~~le~dL~~Lk~fF~A~-GeGLp~elve~~~~~l~~vL~L~~~~ 753 (820)
++..|++ ..-+.++..-..-++-|++.|++|--.. ..|.....+......+++.+.|+..+
T Consensus 219 l~~~Ll~-~~vk~in~~al~~~~~Dv~~lE~f~~~~~~~~~~~~~L~~~F~eLrQlvdLl~s~ 280 (311)
T PF04091_consen 219 LLDLLLS-DDVKRINMNALQNFDLDVKYLESFADSLPVPGNNIPSLRETFAELRQLVDLLLSD 280 (311)
T ss_dssp HHHHHT----------TTHHHHHHHHHHHHHHHTT-SSSS--SSTTGGGGHHHHHHHHHHH--
T ss_pred HHHHhcC-CcccccCHHHHHHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHHHhcC
Confidence 9999984 4456689999999999999999999887 11222223333444588888766554
No 10
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=1.5 Score=53.01 Aligned_cols=350 Identities=19% Similarity=0.245 Sum_probs=199.1
Q ss_pred HHHHhHHHHHHHHhhhhcHHHHHHhhh---hh-HHHHHHHHHhhhcccCCCCCcccccccCCCccchhhhHHHHHHHHHH
Q 003434 355 ACYGNEIKQFISSIVELTPDAVQVLRA---AD-KLEKDLVQIAVEDSVDSDDGGKAIIREMPPYEAEGAIANLVKMWLKT 430 (820)
Q Consensus 355 ~lyg~~Lk~~l~~~~~lt~~~~~vl~a---ad-~Lek~L~~i~~e~~~~~~d~~~~~~~~l~P~~ie~~f~~~V~~Wl~~ 430 (820)
.+|.+.|..++.++.+.-++..+.++= .. .+++-+.+..+++. ..+-|-=-.+-...++...+..
T Consensus 273 ~~Yh~~ls~ll~dl~s~~l~~~eil~llawV~~~~~~~~l~~~~~~~-----------~~l~p~l~~~~v~~Ll~~Y~~~ 341 (667)
T KOG2286|consen 273 ELYHQALSDLLRDLASEALELREILQLLAWVRNEYYTPLLQLNVDVL-----------RALGPLLRPKHVVALLDLYLER 341 (667)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhcChhhhccchhh-----------hhhcCccChhHHHHHHHHHHHH
Confidence 778888888888876644333322221 11 11122222111111 1122322345566677777778
Q ss_pred HHHHHHHHHHhhhccC--CcccCC----CCC--CCcccHHHHHHHHHHHHHHHhCCCCCCCcCchHHHHHHHHHHHHHHH
Q 003434 431 RIDRLKEWVDRNLQQE--DWNPQQ----NQE--GFASSAVEVLRIIDETLDAFFQLPIPMHPALLPDLMAGLDRCLQYYV 502 (820)
Q Consensus 431 ~~~k~~ewV~rAie~E--~w~P~s----~~~--~hS~SvVDvf~~~~etvd~f~~L~wp~~~~~l~~L~~gi~~~l~~Y~ 502 (820)
.-.++.+|+.++.+.| .|--.+ +.+ -|++=.+++|.|+.|.++.+-... . ++.--+-..+-.|+
T Consensus 342 ~t~n~~ewl~~~~e~e~~~~~~~~~P~rd~~g~~~t~~p~~~fqmi~q~l~~~~~~~----~----Dl~~~~~~~~~~~v 413 (667)
T KOG2286|consen 342 ATANMKEWLMNALELEAAAWAKETEPPRDEEGYLYTPGPVIFFQMITQQLQVAAATS----S----DLSGKILRSLLSEV 413 (667)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCccccccccCcccHHHHHhhHHHHHHHHhhH----H----HHHHHHHHHHHHHh
Confidence 8889999999999976 454322 222 378889999999999999987762 2 22222222233333
Q ss_pred HHHHhhccCCcccCCCCCccccccCCCchhHHHhhhcCCCCcccccccccccCCccccccCcceEE-eccHHHHHHHHHH
Q 003434 503 TKAKSGCGSRNTYVPTMPALTRCTTGSKFQGVWKKKEKSPNSQKKNSQVATMNGEISFRVPQLCIR-INSFHRIKSELDV 581 (820)
Q Consensus 503 ~~v~~~~~~k~~~~p~~P~lTr~~~~~~~~~~~Kkk~~~~~~~e~~~~~~~~~~~~s~~~~~lCVr-LNnLe~i~~~L~~ 581 (820)
..... +| .++- ...+... + . +...+.+..|+. .||=..+..-...
T Consensus 414 ~~f~~------~~----------~~~~---~~~~e~~-~----~----------~~~~~l~~y~iA~~N~~~~~a~~~~~ 459 (667)
T KOG2286|consen 414 PSFAR------NY----------PKAQ---DEDQESH-R----R----------EQPEGLREYLIANINNNLKMAMLMVN 459 (667)
T ss_pred HHHHH------HH----------HHhH---HHHHHhc-h----h----------cccccHHHHHHHHHhchhHHHHHHHH
Confidence 33311 11 0000 0001110 0 0 011111223333 2332222222222
Q ss_pred HHHHHHhhhccccccccccccccccccccccHHHHHHHHHHHHHHHhhhHhhcccchhhhcccccCC-CCccchHHHHHH
Q 003434 582 LEKRVITHLRNCESAHAEDFSNGLGKKFELTPAACVEGVQQLSEAVAYKIVFHDLSHVLWDGLYVGE-PSSSRIEPLLQE 660 (820)
Q Consensus 582 Lek~i~~~~~~~~s~~~~~~~~~l~~~F~~s~~~~~~~i~~l~e~~a~klvf~Dl~~~~~~~Ly~~~-v~~~rI~PlL~~ 660 (820)
+ |.. .|.+....+....-.+.++..|.+. +|.|++..|-. ++-.. -+.+..+-+...
T Consensus 460 ~-------~~~---------~d~~~~~l~~~~~i~~~~~~~l~e~-----~~~d~~~~~~~-lf~~~W~~g~~~~~Iv~T 517 (667)
T KOG2286|consen 460 L-------KSK---------YDTLKGLLDGFIEIAKHGVSGLLEE-----IFLDLQPLLNK-LFTKEWCAGSVTENIVAT 517 (667)
T ss_pred H-------Hhc---------cchhHHHhHHHHHHHHhHHHHHHHH-----HHHHHHHHHHH-HhhhhhhchhhHHHHHHH
Confidence 2 111 1234445555556666677777764 46688876532 22111 122667778888
Q ss_pred HHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHhhhCCCCCcHHHhHHhH
Q 003434 661 LERNLLIISDTVHERVRTRIITDIMKASFDGFLLVLLAGGPSRAFTRQDSQIIEDDFKSLKDLFWANGDGLPIELIDKFS 740 (820)
Q Consensus 661 Ld~~L~~l~~~l~~~~~~rvl~~l~ka~~e~~l~VLL~gGpsR~fs~~d~~~le~dL~~Lk~fF~A~GeGLp~elve~~~ 740 (820)
|+..|.-+......- |.+++-++-..+.-.+++-|+-+ |.+..+-.+.|-.|.+.|.+||---|. +.+-.-...
T Consensus 518 ~~dy~~D~~~~~~~~-f~~fi~e~~~~~v~~Yl~~l~~k---r~~~~~~~~~i~~d~~~~~~~f~~~~~--~~~~~~~~~ 591 (667)
T KOG2286|consen 518 LDDYLPDFKELMGEY-FVRFIEEASLELVIEYLRALSKK---RASIQELIEKIKSDAETLYHFFRKYGS--DVDTLISTI 591 (667)
T ss_pred HHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHhhHHHHHHHHHHhCc--chhhhhhhh
Confidence 999999998888887 99999999999999999999865 444445668888999999999988887 444333334
Q ss_pred HHHHhhcccccCChHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcccchhhhcccCChH
Q 003434 741 ATARGVLPLFRTDTESLIERFRRVTLETYGSSARSRLPLPPTSGQWNPTEPNTLLRVLCYRNDEA 805 (820)
Q Consensus 741 ~~l~~vL~L~~~~Td~LIe~f~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~tilRVLchR~D~~ 805 (820)
..+..++.+. +.|.++..+...-. .+ |+ ...+-|-+||--|.|=.
T Consensus 592 ~~l~el~~~~--d~d~~~~~~~~l~~-~Y----------------pD-~~~~~l~~il~~R~dls 636 (667)
T KOG2286|consen 592 STLAELISLQ--DPDLIKLEVSTLLE-CY----------------PD-IPKDHLEAILKIRGDLS 636 (667)
T ss_pred HHHHHHHhcC--ChHHHHHHHHHHHH-HC----------------CC-CcHHHHHHHHHHhcCCC
Confidence 4466666555 67777776654432 22 22 44677888888887644
No 11
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=96.94 E-value=1.3 Score=51.70 Aligned_cols=414 Identities=17% Similarity=0.195 Sum_probs=220.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHHHHhhhccchhhhccCccccccHHHHHHHHH
Q 003434 279 RVETYIRSSLRTAFAQRMEKADSSRRASKNQPNPLPVLAILAKDVGELAIKERRVFSPILKRWHPLAAGVAVATLHACYG 358 (820)
Q Consensus 279 ~v~~yI~~s~~~af~~~l~~~~~~~~~~~~~~~~~~~l~~La~~i~~la~~e~~~ysPiL~~~~p~a~~Vaa~~Lh~lyg 358 (820)
-+-..|..|+++.|+++=++....... ..+..-+. +++.-+-+...+.|-| .|| + +.+.|.-|.
T Consensus 256 f~i~~i~~sv~e~F~r~r~~yi~d~sg---elnmDfIf----~dL~~i~e~i~~~~pp---~~N-----I-~~~y~~~Yq 319 (742)
T COG5173 256 FVIKSIEVSVKEKFDRLRNEYIFDNSG---ELNMDFIF----KDLSFIRENISLSFPP---FDN-----I-LTLYHNNYQ 319 (742)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHhcCcc---hhhhHHHH----HHHHHHHHHccccCCc---hHH-----H-HHHHHHHHH
Confidence 344556678888899987776544321 22333343 2222222223344433 133 2 455666655
Q ss_pred hHHH-HHHHHhhhhcHHHHHHhhhh---hHHHHHHHHHhhhcccCCCCCcccccccCCCccc--------hhhhHHHHHH
Q 003434 359 NEIK-QFISSIVELTPDAVQVLRAA---DKLEKDLVQIAVEDSVDSDDGGKAIIREMPPYEA--------EGAIANLVKM 426 (820)
Q Consensus 359 ~~Lk-~~l~~~~~lt~~~~~vl~aa---d~Lek~L~~i~~e~~~~~~d~~~~~~~~l~P~~i--------e~~f~~~V~~ 426 (820)
..|- -+.+.++ .-+++...+.-. +..++.+- +-|||-. ++--+.+++.
T Consensus 320 ecL~~L~td~v~-~~~~a~~iL~ii~f~~~y~~t~e-------------------~~f~f~~dev~~~l~d~e~g~L~~~ 379 (742)
T COG5173 320 ECLLKLFTDEVT-ERLDAGEILAIIEFVGNYYNTIE-------------------SKFNFIADEVGGRLLDNETGELLEK 379 (742)
T ss_pred HHHHHHHHHHhh-cCCcchHHHHHHHHHHHHHHHHH-------------------HhCCccHHHhcccccCCcchHHHHH
Confidence 5544 4444443 333333222211 11222222 2244432 2333567888
Q ss_pred HHHHHHHHHHHHHHhhhcc--CCcccCC-------CCCCCcccHHHHHHHHHHHHHHHhCCCCCCCcCchHHHHHHHHHH
Q 003434 427 WLKTRIDRLKEWVDRNLQQ--EDWNPQQ-------NQEGFASSAVEVLRIIDETLDAFFQLPIPMHPALLPDLMAGLDRC 497 (820)
Q Consensus 427 Wl~~~~~k~~ewV~rAie~--E~w~P~s-------~~~~hS~SvVDvf~~~~etvd~f~~L~wp~~~~~l~~L~~gi~~~ 497 (820)
..+-...|++||+.+-.+. |+|-.++ +...+.+--|-.|.||.|-++.+..=+ .++++-.....|...
T Consensus 380 Yt~l~~~Kl~EWv~nl~~~evd~F~~R~~ep~~Dsdg~l~l~Gt~~~fQmitqQ~e~ia~tn---~sdvvgiV~~~i~~~ 456 (742)
T COG5173 380 YTKLAQEKLKEWVMNLTRIEVDKFYARNEEPSRDSDGKLVLPGTVSLFQMITQQLEPIAFTN---RSDVVGIVFAHITRT 456 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCcCccCccHHHHHHHHHHHhhhhhcCC---ccchhhhhHHHHHHH
Confidence 8888999999999998775 4565443 333477778999999999999877655 445554555556666
Q ss_pred HHHHHHHHHhhccCCcccCCCCCccccccCCCchhHHHhhhcCCCCcccccccccccCCccccccCcceEEecc-----H
Q 003434 498 LQYYVTKAKSGCGSRNTYVPTMPALTRCTTGSKFQGVWKKKEKSPNSQKKNSQVATMNGEISFRVPQLCIRINS-----F 572 (820)
Q Consensus 498 l~~Y~~~v~~~~~~k~~~~p~~P~lTr~~~~~~~~~~~Kkk~~~~~~~e~~~~~~~~~~~~s~~~~~lCVrLNn-----L 572 (820)
++.|++.-.+.+ .+.++|-.... ||..++ -+..+-|+.+-| -
T Consensus 457 ~tk~q~~wks~l----------------------~ee~~kq~~~n--pEs~~p---------~Gl~eyliav~Nd~lK~A 503 (742)
T COG5173 457 ITKYQEIWKSNL----------------------VEEMDKQFKSN--PESSSP---------AGLEEYLIAVGNDGLKIA 503 (742)
T ss_pred HHHHHHHHHHHH----------------------HHHHHHHhcCC--CccCCc---------chHHHHHHHHcCCcchHH
Confidence 777776653222 12233332110 110010 111222333222 1
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccccccccccccccccc----HHHHHHHHHHHHHHHhhhHhhcccchhh----hccc
Q 003434 573 HRIKSELDVLEKRVITHLRNCESAHAEDFSNGLGKKFELT----PAACVEGVQQLSEAVAYKIVFHDLSHVL----WDGL 644 (820)
Q Consensus 573 e~i~~~L~~Lek~i~~~~~~~~s~~~~~~~~~l~~~F~~s----~~~~~~~i~~l~e~~a~klvf~Dl~~~~----~~~L 644 (820)
+|+-.-..+-.+-+..-.. .++...|+++ ..-++-+.-++++++ +.|++.++ .+.-
T Consensus 504 ~y~~~~~sntfeLitseye-----------~d~~~~lgkTvDgfi~I~~~s~~~l~~~i-----~~d~~pa~~~iF~~~W 567 (742)
T COG5173 504 QYITSLPSNTFELITSEYE-----------NDEVKELGKTVDGFIDILKASNTFLAEFI-----IYDCQPAIDKIFTDEW 567 (742)
T ss_pred HHHHhcchhhhhhhhHHHH-----------HHHHHHhcccchhHHHHHhhhhHHHHHHH-----HHhhhhhHHHhcCccc
Confidence 2322222222221110000 0122233322 222233344555544 45888664 3566
Q ss_pred ccCCCCccchHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhH--HHHHHHHHHHHH
Q 003434 645 YVGEPSSSRIEPLLQELERNLLIISDTVHERVRTRIITDIMKASFDGFLLVLLAGGPSRAFTRQDS--QIIEDDFKSLKD 722 (820)
Q Consensus 645 y~~~v~~~rI~PlL~~Ld~~L~~l~~~l~~~~~~rvl~~l~ka~~e~~l~VLL~gGpsR~fs~~d~--~~le~dL~~Lk~ 722 (820)
|.|+++.-.+.-+=+||-.+-..+++. .+.-++-++--++.=++|+.|. -.|++..+++ +-|..|+..+-+
T Consensus 568 y~gS~~k~IvdTl~dyl~D~~~~M~~~----lFv~Fi~e~s~~~vi~yl~~l~---~k~a~~~~~na~~~lksD~~~~y~ 640 (742)
T COG5173 568 YGGSVTKVIVDTLQDYLSDYQNTMSEY----LFVTFIHELSMSIVIAYLKQLG---RKRASIAEENASRTLKSDHTKLYE 640 (742)
T ss_pred cccchHHHHHHHHHHHHHHHHHhcccH----HHHHHHHHHHHHHHHHHHHHHh---hhhhhhcchhHHHHHHHHHHHHHH
Confidence 777766554455555555555555544 4555565556666666777664 4566666665 678899999999
Q ss_pred HhhhCCCCCcHHHhHHhHHHHHhhcccccCChHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcccchhhhcccC
Q 003434 723 LFWANGDGLPIELIDKFSATARGVLPLFRTDTESLIERFRRVTLETYGSSARSRLPLPPTSGQWNPTEPNTLLRVLCYRN 802 (820)
Q Consensus 723 fF~A~GeGLp~elve~~~~~l~~vL~L~~~~Td~LIe~f~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~tilRVLchR~ 802 (820)
.|-.-|+| +-+.....++..++.+|.+..+.++-.+.+.--+.+ |+ .-..-|--||-.|.
T Consensus 641 ~f~~y~d~---e~~k~tl~pI~k~~~~m~~~~~d~~~~~~~~lkeiY----------------wD-~~~sli~~Ilk~R~ 700 (742)
T COG5173 641 MFSGYGDP---EDVKTTLSPILKIIPLMDTRNDDLFIVEVKSLKEIY----------------WD-IKKSLIKTILKKRQ 700 (742)
T ss_pred HHHhhCCH---HHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHh----------------cc-chHHHHHHHHHhhh
Confidence 99877764 233334556888999888887777666655544333 33 23456667777787
Q ss_pred ChHHh
Q 003434 803 DEAAT 807 (820)
Q Consensus 803 D~~As 807 (820)
|-+-|
T Consensus 701 Dl~~s 705 (742)
T COG5173 701 DLTES 705 (742)
T ss_pred hhHHH
Confidence 76665
No 12
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=96.71 E-value=0.15 Score=60.05 Aligned_cols=289 Identities=17% Similarity=0.203 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc-CCcccCCC-------CCCCcccHHHHHHHHHHHHHHHhCCCCCC-CcCchHHHH
Q 003434 421 ANLVKMWLKTRIDRLKEWVDRNLQQ-EDWNPQQN-------QEGFASSAVEVLRIIDETLDAFFQLPIPM-HPALLPDLM 491 (820)
Q Consensus 421 ~~~V~~Wl~~~~~k~~ewV~rAie~-E~w~P~s~-------~~~hS~SvVDvf~~~~etvd~f~~L~wp~-~~~~l~~L~ 491 (820)
......|++--.+-..+.++..+.. +.|++..+ .-+=..|++++.++++.+.+.+..|+-.. ...|+..+-
T Consensus 131 ~~~~~~Wl~~E~~~a~~r~~~i~~s~~aw~~~~~~~~~~~~~~k~t~~A~~~~~Ll~~it~ry~~L~~~~~rl~Fl~~iq 210 (494)
T PF04437_consen 131 PDWFDRWLNAEKEFALERFDEIISSPDAWQIDYDDVEADSDELKPTKSAERFVKLLESITDRYRPLPSLSHRLRFLIDIQ 210 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------------HTTSSGGGG-GGHHHHHHHHHHHHHHHHHHHHH---GG--GHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhccccCCchhhcchHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHH
Confidence 4566899999999899999987775 57888732 22457899999999999999998888653 344454333
Q ss_pred HHHHHHHHHHHHHHHhhccCCcccCCCCCccccccCCCchhHHHhhhcCCCCcccccccccccCCccccccCcceEEecc
Q 003434 492 AGLDRCLQYYVTKAKSGCGSRNTYVPTMPALTRCTTGSKFQGVWKKKEKSPNSQKKNSQVATMNGEISFRVPQLCIRINS 571 (820)
Q Consensus 492 ~gi~~~l~~Y~~~v~~~~~~k~~~~p~~P~lTr~~~~~~~~~~~Kkk~~~~~~~e~~~~~~~~~~~~s~~~~~lCVrLNn 571 (820)
-. .+..|-..+...|-+-+.. ... .. ......+..++|..+|+
T Consensus 211 l~---lld~~~~~L~~~~~~~~~~--------------------~s~----~~----------~~~~~~~l~~l~~~lns 253 (494)
T PF04437_consen 211 LP---LLDDYHDRLSQSLEAFESS--------------------TST----LA----------SLSGDSGLERLCKILNS 253 (494)
T ss_dssp HH---HHHHTHHHHHHHHHHHHHT----------------------------S----------CEEHHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHHHHHhhc--------------------ccc----hh----------hccCCchHHHHHHHHHH
Confidence 22 2344444443333111110 000 00 00112233678999999
Q ss_pred HHHHHHHHHHHHHHHHhh---hcccccc----ccccc--cccccccccccHHHHHHHHHHHHHHHhhhHhhcccchh---
Q 003434 572 FHRIKSELDVLEKRVITH---LRNCESA----HAEDF--SNGLGKKFELTPAACVEGVQQLSEAVAYKIVFHDLSHV--- 639 (820)
Q Consensus 572 Le~i~~~L~~Lek~i~~~---~~~~~s~----~~~~~--~~~l~~~F~~s~~~~~~~i~~l~e~~a~klvf~Dl~~~--- 639 (820)
.+|+...|....+.+-.- ....... ....+ ...-.+.|+.+......-.+++.+.+...++ .+++..
T Consensus 254 a~yi~~~L~eW~e~~~Flq~~~~~~~~~~~~~~~~~~~~~~~~~siFde~i~~y~~l~~~~~~~iv~~v~-~~~k~~lk~ 332 (494)
T PF04437_consen 254 ANYIENVLREWSEDVFFLQMRAKESESSNNSLEDIANETSSEEGSIFDETISAYEKLRKRMLESIVDRVV-KEFKASLKA 332 (494)
T ss_dssp HHHHHHHHHHHCTSHHHH------------HHHHHHHHHTT--S-TTHHHHHHHHHHHTHHHHHHHHHHH-HHHHHHTHH
T ss_pred HHHHHHHHHHhcCCCeeehhhccchhhcccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 999999997776644221 0000000 00000 0022458888877777666666555554433 122221
Q ss_pred -h----hcccccC-----CCCccchHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHhcCC-CCCCCChh
Q 003434 640 -L----WDGLYVG-----EPSSSRIEPLLQELERNLLIISDTVHERVRTRIITDIMKASFDGFLLVLLAGG-PSRAFTRQ 708 (820)
Q Consensus 640 -~----~~~Ly~~-----~v~~~rI~PlL~~Ld~~L~~l~~~l~~~~~~rvl~~l~ka~~e~~l~VLL~gG-psR~fs~~ 708 (820)
+ |.....+ ...+..+.|.+..|...|..+...+....+.++ |+.+.+.+-..|+..- ....||..
T Consensus 333 Y~k~~~W~~~~~~~~~~~~~~S~el~~~L~~L~~~L~~L~~~L~~~~f~~i----~r~ia~~l~~~l~~~Il~~n~Fs~~ 408 (494)
T PF04437_consen 333 YFKRSQWSSIESPSDSSPLSPSPELVPALSLLRSRLSFLERSLPPADFRRI----WRRIASKLDDYLWESILMSNKFSRA 408 (494)
T ss_dssp HHT--GGGT-------------GGGHHHHHHHHHHHHHHHTS--HHHHHHH----HHHHHHHHHHHHHHTTTTTS-B-HH
T ss_pred HhCccCCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCHHHHHHH----HHHHHHHHHHHHHHHhhhcCeeChh
Confidence 1 3222222 123667899999999999999999999888888 5555444444444321 12379999
Q ss_pred hHHHHHHHHHHHHHHhhhCCCCCcHHHhHHhHHHHHhhcccccCChHH
Q 003434 709 DSQIIEDDFKSLKDLFWANGDGLPIELIDKFSATARGVLPLFRTDTES 756 (820)
Q Consensus 709 d~~~le~dL~~Lk~fF~A~GeGLp~elve~~~~~l~~vL~L~~~~Td~ 756 (820)
-..-+..|++.|...|.. ..+.|. .....+.+.+.|..++.+.
T Consensus 409 Ga~Ql~~D~~~L~~~~~~-~~~~p~----~~f~~l~E~~~LL~L~~~~ 451 (494)
T PF04437_consen 409 GAAQLQFDMRALFSVFSQ-YTPRPE----AFFKRLREACKLLNLPYGS 451 (494)
T ss_dssp HHHHHHHHHHHHHTTS---TTSGG-----HHHHHHHHHHHHHGGGG-C
T ss_pred HHHHHHHHHHHHHHHHHh-hccCHH----HHHHHHHHHHHHcCCCCcc
Confidence 999999999999999998 333343 4455566666666665553
No 13
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=72.21 E-value=1.9e+02 Score=33.26 Aligned_cols=115 Identities=14% Similarity=0.299 Sum_probs=68.4
Q ss_pred hhccchh-hhccCccccccHHHHHHHHHhHHHHHHHHhhh-hc-HHHHHHhhhhhHHHHHHHHHhhhcccCC--CCCccc
Q 003434 332 RVFSPIL-KRWHPLAAGVAVATLHACYGNEIKQFISSIVE-LT-PDAVQVLRAADKLEKDLVQIAVEDSVDS--DDGGKA 406 (820)
Q Consensus 332 ~~ysPiL-~~~~p~a~~Vaa~~Lh~lyg~~Lk~~l~~~~~-lt-~~~~~vl~aad~Lek~L~~i~~e~~~~~--~d~~~~ 406 (820)
..|+.+| ..|+ .+..+ +..+...=-.+|...|.+... ++ .-.+..++..-.+|++|...+....... ..++..
T Consensus 262 ~~~~~iFP~~W~-v~~~L-~~~Fc~~Tr~dL~~iL~~~~~~~dv~~Ll~aLq~T~~FE~~L~~rF~~~~~~~~~~~~~~e 339 (383)
T PF04100_consen 262 EKFANIFPPSWR-VPERL-CVEFCEITRKDLSEILSKRKSELDVKLLLKALQKTLEFEKELAKRFAGSTDESQEIEKKKE 339 (383)
T ss_pred hhccccCCCcCc-HHHHH-HHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 3465554 2355 34444 334444555778888855322 22 3344455555569999886652111000 000000
Q ss_pred ccccCCCcc--chhhhHHHHHHHHHHHHHHHHHHHHhhhccCCc
Q 003434 407 IIREMPPYE--AEGAIANLVKMWLKTRIDRLKEWVDRNLQQEDW 448 (820)
Q Consensus 407 ~~~~l~P~~--ie~~f~~~V~~Wl~~~~~k~~ewV~rAie~E~w 448 (820)
.-..-.||. |.+.|.|++.-|++.++..+.+.+.+.++.++|
T Consensus 340 ~~~~~~~f~g~IS~~FepyL~iyv~~qdk~L~~~l~~~~~~~~w 383 (383)
T PF04100_consen 340 MKEIAENFKGIISSCFEPYLSIYVDSQDKNLSEKLDKFISEEKW 383 (383)
T ss_pred ccccccccccchHHhhHhhHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 000002454 899999999999999999999999999999999
No 14
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.32 E-value=29 Score=42.17 Aligned_cols=214 Identities=17% Similarity=0.233 Sum_probs=123.4
Q ss_pred cceEEeccHHHHHHHHHHHHHHHHhhhccccccccc--------cccccccccccccHHHHHHHHHHHHHHHh-hhHh--
Q 003434 564 QLCIRINSFHRIKSELDVLEKRVITHLRNCESAHAE--------DFSNGLGKKFELTPAACVEGVQQLSEAVA-YKIV-- 632 (820)
Q Consensus 564 ~lCVrLNnLe~i~~~L~~Lek~i~~~~~~~~s~~~~--------~~~~~l~~~F~~s~~~~~~~i~~l~e~~a-~klv-- 632 (820)
.--+.|||.+-...-+..|-+.+...|.++.+.... .+...+...|. .-++.++.++-..+- .|+-
T Consensus 543 ~fl~~LNn~~ls~eyi~~L~~~le~~~~~vf~~~~d~~~l~~~l~~l~~l~~~f~---~L~k~g~~~Lf~~~lkpRi~~~ 619 (773)
T KOG0412|consen 543 NFLTALNNADLSKEYIHTLKKTLESDCTEVFPQNFDRAKLKSCLSNLEALSLKFK---DLLKWGMEQLFSTVLKPRIRPW 619 (773)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHhHhhh
Confidence 347789999777777777777777677766543210 00112222222 234455555433221 2322
Q ss_pred ---hcccchhhhcccccCC-CCccchHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCChh
Q 003434 633 ---FHDLSHVLWDGLYVGE-PSSSRIEPLLQELERNLLIISDTVHERVRTRIITDIMKASFDGFLLVLLAGGPSRAFTRQ 708 (820)
Q Consensus 633 ---f~Dl~~~~~~~Ly~~~-v~~~rI~PlL~~Ld~~L~~l~~~l~~~~~~rvl~~l~ka~~e~~l~VLL~gGpsR~fs~~ 708 (820)
|..+.+.+-..=|... ..+.-+.-++..+++.+..+-..++.++-..++.=+..-+..-++.++.- -.|++-
T Consensus 620 id~f~~is~~ls~edy~~~ea~d~~Vq~fl~~v~~l~~~~k~~ltp~nY~sLlsl~~~~ia~~LE~~i~k----~~FNrl 695 (773)
T KOG0412|consen 620 IDTFVNISYNLSEEDYAAYEANDPWVQQFLSSVEQLLAELKNSLTPENYDSLLSLIVDEIATQLEQIIWK----IQFNRL 695 (773)
T ss_pred hhhhhhhhccccHHHHhhhccCChHHHHHHHHHHHHHHhhhcccChhhHHHHHHHHHHHHHHHHHHHHHH----hHHHhh
Confidence 2222222211222222 23445778888888888888777777776665544444444445555541 113322
Q ss_pred hHHHHHHHHHHHHHHhhhCCCCCcHHHhHHhHHHHHhhcccccCChHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCC
Q 003434 709 DSQIIEDDFKSLKDLFWANGDGLPIELIDKFSATARGVLPLFRTDTESLIERFRRVTLETYGSSARSRLPLPPTSGQWNP 788 (820)
Q Consensus 709 d~~~le~dL~~Lk~fF~A~GeGLp~elve~~~~~l~~vL~L~~~~Td~LIe~f~~~~~~~~g~~~~~~~~~~~~~~~~~~ 788 (820)
-.-.++.++..|-.||+.. ...++.||..+ +.+++.|..++++.=|=+|..-. .| +..|.
T Consensus 696 G~lqLDre~r~lis~lt~~---t~~~lRdKf~R-LtQIatLLnle~~se~le~w~~~---~g------------~~twr- 755 (773)
T KOG0412|consen 696 GGLQLDRELRALISYLTGV---TQWNLRDKFAR-LTQIATLLNLEKDSEILEYWGPN---SG------------PLTWR- 755 (773)
T ss_pred cchHhhHHHHHHHHHhhcc---cchhHHHHHHH-HHHHHHHHcccccchHHHhcCCC---CC------------CceEE-
Confidence 2346788999999999832 35777787665 88998888888776555442111 11 24566
Q ss_pred CCcccchhhhcccCCh
Q 003434 789 TEPNTLLRVLCYRNDE 804 (820)
Q Consensus 789 ~d~~tilRVLchR~D~ 804 (820)
-.|+-+-+||-.|.|-
T Consensus 756 Lt~~EVr~vl~lr~df 771 (773)
T KOG0412|consen 756 LTPAEVRKVLALRIDF 771 (773)
T ss_pred eCHHHHHHHHHhhccC
Confidence 6788889999999874
No 15
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=47.89 E-value=2.1e+02 Score=27.23 Aligned_cols=84 Identities=17% Similarity=0.251 Sum_probs=61.4
Q ss_pred hcccccCCCCccchHHHH-HHHHHHHHHHHH---hhHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHH
Q 003434 641 WDGLYVGEPSSSRIEPLL-QELERNLLIISD---TVHERVRTRIITDIMKASFDGFLLVLLAGGPSRAFTRQDSQIIEDD 716 (820)
Q Consensus 641 ~~~Ly~~~v~~~rI~PlL-~~Ld~~L~~l~~---~l~~~~~~rvl~~l~ka~~e~~l~VLL~gGpsR~fs~~d~~~le~d 716 (820)
|++--.++.++..|+.++ +.+-.++..+|+ .|+...|..+++|+=. ++.-+.-|| +|--.+.-|+++..-|++=
T Consensus 22 Fe~~~~~~~~~~Tv~d~vee~ia~~im~vc~Qnp~L~~~~R~~iirE~Da-iv~DLeEVL-a~V~~~~aT~eQ~~Fi~Ef 99 (113)
T PF12290_consen 22 FESSQSGDTGDETVEDVVEEQIASQIMAVCEQNPELEFSQRFQIIREADA-IVYDLEEVL-ASVWNQKATNEQIAFIEEF 99 (113)
T ss_pred hcCCCCCCcccchHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHH-HHHHHHHHH-HHHHcCCCCHHHHHHHHHH
Confidence 343344556677777777 567888888875 6788999999998744 444455554 3555677799999999999
Q ss_pred HHHHHHHhhh
Q 003434 717 FKSLKDLFWA 726 (820)
Q Consensus 717 L~~Lk~fF~A 726 (820)
.-.+|++|-.
T Consensus 100 ~~LiKNLFD~ 109 (113)
T PF12290_consen 100 IGLIKNLFDS 109 (113)
T ss_pred HHHHHHhHHH
Confidence 9999999964
No 16
>PF15080 DUF4547: Domain of unknown function (DUF4547)
Probab=47.05 E-value=19 Score=36.07 Aligned_cols=97 Identities=15% Similarity=0.293 Sum_probs=63.3
Q ss_pred ccchHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHhhhCCCC
Q 003434 651 SSRIEPLLQELERNLLIISDTVHERVRTRIITDIMKASFDGFLLVLLAGGPSRAFTRQDSQIIEDDFKSLKDLFWANGDG 730 (820)
Q Consensus 651 ~~rI~PlL~~Ld~~L~~l~~~l~~~~~~rvl~~l~ka~~e~~l~VLL~gGpsR~fs~~d~~~le~dL~~Lk~fF~A~GeG 730 (820)
..++..=|.-|..-|-++++++--.++|.=|+-+|..+++ .|.+=|.|...|--||.|.|+-
T Consensus 70 ht~VlEkLPdL~r~LPTlASvLrrKvkN~~Ir~vwesvLe------------------e~GLqE~dv~aLCtFfiahgnk 131 (196)
T PF15080_consen 70 HTRVLEKLPDLVRGLPTLASVLRRKVKNKRIRVVWESVLE------------------ECGLQEGDVTALCTFFIAHGNK 131 (196)
T ss_pred HHHHHHHhhHHHhCcchHHHHHHHHhhchHHHHHHHHHHH------------------HcCCCcccHHHHHHHHHHhcch
Confidence 5566777788889999999999999999998877777655 3344466789999999999983
Q ss_pred ---CcHHHhHHhHHHHHhhcccccCChHHHHHHHHHHHH
Q 003434 731 ---LPIELIDKFSATARGVLPLFRTDTESLIERFRRVTL 766 (820)
Q Consensus 731 ---Lp~elve~~~~~l~~vL~L~~~~Td~LIe~f~~~~~ 766 (820)
.+.++..-....+.-.+.-|-. -..|=+-+.++.+
T Consensus 132 aehy~a~~R~~yi~dv~~mItnmVk-Nqalq~~llrAvq 169 (196)
T PF15080_consen 132 AEHYAAKVRQMYIRDVTFMITNMVK-NQALQDGLLRAVQ 169 (196)
T ss_pred HhHhHHHHHHHHHhhHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 2333333333333333332221 2334455555554
No 17
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=46.81 E-value=1.5e+02 Score=31.67 Aligned_cols=149 Identities=16% Similarity=0.231 Sum_probs=81.8
Q ss_pred cceEEeccHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccHHHHHHHHHHHHHHHhhhHhhcccchhh---
Q 003434 564 QLCIRINSFHRIKSELDVLEKRVITHLRNCESAHAEDFSNGLGKKFELTPAACVEGVQQLSEAVAYKIVFHDLSHVL--- 640 (820)
Q Consensus 564 ~lCVrLNnLe~i~~~L~~Lek~i~~~~~~~~s~~~~~~~~~l~~~F~~s~~~~~~~i~~l~e~~a~klvf~Dl~~~~--- 640 (820)
+=+|..-++-++-.+++.+...+..-.... +.+.+...|..+-..+.+--..+...++.+++ |+....
T Consensus 6 eRiVA~ESl~fLa~~l~~~~p~l~~lLp~~-------~~~~l~~Fy~~tv~~v~dLr~~iy~~~a~~~l--~~~~i~~~I 76 (234)
T PF10474_consen 6 ERIVAVESLSFLARQLESLRPYLESLLPPN-------KRDFLEQFYSQTVSAVPDLREPIYKCVASRLL--DLEQILNSI 76 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CHHHHHHHH
Confidence 347777888888889988877664333211 12245566666665555555555555554443 333221
Q ss_pred ----hcccccCCCCccchHHHHHHHHHHHHHHHHhhH-----HHHHhHHHHHHHHHHHHHHHHHHhcC-CCCCCCChhhH
Q 003434 641 ----WDGLYVGEPSSSRIEPLLQELERNLLIISDTVH-----ERVRTRIITDIMKASFDGFLLVLLAG-GPSRAFTRQDS 710 (820)
Q Consensus 641 ----~~~Ly~~~v~~~rI~PlL~~Ld~~L~~l~~~l~-----~~~~~rvl~~l~ka~~e~~l~VLL~g-GpsR~fs~~d~ 710 (820)
|+.--.+.-.+.-+..++ +.+..++..|. -..-..+.+.+|..++..+..+|+.| +.-|--|.+.-
T Consensus 77 a~vKWdvkev~~qhs~YVd~l~----~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~~~~~~Lveg~s~vkKCs~eGR 152 (234)
T PF10474_consen 77 ANVKWDVKEVMSQHSSYVDQLV----QEFQQFSERLDEISKQGPIPPEVQNVLWDRLIFFAFETLVEGYSRVKKCSNEGR 152 (234)
T ss_pred HHcCCCCCCCCCccCHHHHHHH----HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhH
Confidence 221111111233333343 33333333331 11123355566888888888888876 22344566677
Q ss_pred HHHHHHHHHHHHHhh
Q 003434 711 QIIEDDFKSLKDLFW 725 (820)
Q Consensus 711 ~~le~dL~~Lk~fF~ 725 (820)
+.|.-|++.+...+-
T Consensus 153 alM~lD~q~~~~~le 167 (234)
T PF10474_consen 153 ALMQLDFQQLQNKLE 167 (234)
T ss_pred HHHHHHHHHHHHHHH
Confidence 788888888877774
No 18
>PF12854 PPR_1: PPR repeat
Probab=44.89 E-value=33 Score=25.08 Aligned_cols=33 Identities=18% Similarity=0.399 Sum_probs=24.8
Q ss_pred CCCCCCHHHHHHHHHHhhccCCCccchHhHHHHHHHH
Q 003434 114 DGFPFNLRLYEMLLEACFDSSYETSIIEEVDELMEQI 150 (820)
Q Consensus 114 dg~pln~rlY~~LL~~~fD~~de~~l~~e~dElLe~l 150 (820)
.|++||+..|-.|+.+.--.. -.+|+-++++++
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G----~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAG----RVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCC----CHHHHHHHHHhC
Confidence 489999999999999763322 256777887765
No 19
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=44.70 E-value=7.5e+02 Score=31.21 Aligned_cols=272 Identities=15% Similarity=0.195 Sum_probs=132.2
Q ss_pred HHHhHHHHHHHHHhhhHhhhcCCChHHHhHHHHHHHHHhhhhhccchhhhhhhccCCCCchhhHHHHHHHHHHHHHHHH-
Q 003434 216 TLTSIMSWAEKRLLAYHDTFDDGNLETMDGIVSLGVSSAKILTEDISNEYRRRRKGEVDVPRSRVETYIRSSLRTAFAQ- 294 (820)
Q Consensus 216 ~l~~i~~W~~k~L~~yH~~f~~~~~~~m~~~~~v~~~~~~~l~ed~~~~~~~~~~~~~~~~~~~v~~yI~~s~~~af~~- 294 (820)
+|..=.+|.. .-.+.-+.|..+.+..+..-+.=|--+-.++.+-|.++.++.. +....+|++.-+.-.+-.||+.
T Consensus 123 ~L~EA~~w~~-l~~~v~~~~~~~d~~~~a~~l~~m~~sL~~l~~~pd~~~r~~~---le~l~nrLEa~vsp~Lv~al~~~ 198 (766)
T PF10191_consen 123 TLQEADNWST-LSAEVDDLFESGDIAKIADRLAEMQRSLAVLQDVPDYEERRQQ---LEALKNRLEALVSPQLVQALNSR 198 (766)
T ss_pred HHHHHHhHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCCchhHHHHH---HHHHHHHHHHHhhHHHHHHHHhc
Confidence 3444456764 4455566777777653333222222233334444555544332 4456666666666555555442
Q ss_pred ----------HHHhccccc---------------------ccccCCCCCHHHHHHHHHHHHHHHHHHhhhccchhhhccC
Q 003434 295 ----------RMEKADSSR---------------------RASKNQPNPLPVLAILAKDVGELAIKERRVFSPILKRWHP 343 (820)
Q Consensus 295 ----------~l~~~~~~~---------------------~~~~~~~~~~~~l~~La~~i~~la~~e~~~ysPiL~~~~p 343 (820)
++....... ...+....+...|...-.++-.....|.+--+.+|..-++
T Consensus 199 ~~~~~~~~~~if~~i~R~~~l~~~Y~~~r~~~l~~~W~~~~~~~~~~~~~~~L~~fyd~ll~~l~~E~~w~~~vF~~~~~ 278 (766)
T PF10191_consen 199 DVDAAKEYVKIFSSIGREPQLEQYYCKCRKAPLQRLWQEYCQSDQSQSFAEWLPSFYDELLSLLHQELKWCSQVFPDESP 278 (766)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Confidence 221111000 0000012355666666666777777777766666644332
Q ss_pred ccccccHHHHHHHHHhHHHHHHHHhhhhc---------HHHHHHhhhhhHHHHHHHHHhhhcccCCCCCcccccccCCCc
Q 003434 344 LAAGVAVATLHACYGNEIKQFISSIVELT---------PDAVQVLRAADKLEKDLVQIAVEDSVDSDDGGKAIIREMPPY 414 (820)
Q Consensus 344 ~a~~Vaa~~Lh~lyg~~Lk~~l~~~~~lt---------~~~~~vl~aad~Lek~L~~i~~e~~~~~~d~~~~~~~~l~P~ 414 (820)
+-...+..+.+.--+.|-..+.... ....++.+++..+-+-|..+..+...+ .+.++ +.++
T Consensus 279 ----~~~~ll~~~L~~L~PS~~~~l~~al~~~~~~~~L~~L~~l~~~t~~Fa~~l~~~l~~~~~~-~~l~~--~~~l--- 348 (766)
T PF10191_consen 279 ----VLPKLLAETLSALQPSFPSRLSSALKRAGPETKLETLIELYQATEHFARNLEHLLSSLPGE-SNLSK--VEEL--- 348 (766)
T ss_pred ----HHHHHHHHHHHhcCccHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhccccc-cchHH--HHHH---
Confidence 2234444454444344433333321 122222333332222233332211100 00000 0000
Q ss_pred cchhh---hHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCCCcccHHHHHHHHHHHHHHHhCCCCCCCcCchHHHH
Q 003434 415 EAEGA---IANLVKMWLKTRIDRLKEWVDRNLQQEDWNPQQNQEGFASSAVEVLRIIDETLDAFFQLPIPMHPALLPDLM 491 (820)
Q Consensus 415 ~ie~~---f~~~V~~Wl~~~~~k~~ewV~rAie~E~w~P~s~~~~hS~SvVDvf~~~~etvd~f~~L~wp~~~~~l~~L~ 491 (820)
+..+ |.+|..+.-.--...+..-+. ++..+.....+--+.-+.|+..+|..+++.++-...|--. --+..|.
T Consensus 349 -~~al~~PF~~~q~~Yg~lE~~~L~~~L~-~l~~~~~~~~d~v~~L~~s~~k~f~lae~Av~RC~~fT~G---~~~~~Ll 423 (766)
T PF10191_consen 349 -LQALFEPFKPYQQRYGELERRFLSAQLS-ALDLESAELSDAVRRLEESIPKLFGLAEEAVDRCIAFTGG---YGVPGLL 423 (766)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC---ccHHHHH
Confidence 1222 344444443333333444443 4444444443333456789999999999999999988744 3356888
Q ss_pred HHHHHHHHHHHHHHH
Q 003434 492 AGLDRCLQYYVTKAK 506 (820)
Q Consensus 492 ~gi~~~l~~Y~~~v~ 506 (820)
++|+..|.+|++...
T Consensus 424 ~Ald~~~~~y~~~~~ 438 (766)
T PF10191_consen 424 KALDSIFSQYLSSLT 438 (766)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988653
No 20
>PF14923 CCDC142: Coiled-coil protein 142
Probab=42.55 E-value=36 Score=39.74 Aligned_cols=89 Identities=18% Similarity=0.227 Sum_probs=68.6
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHhhhCCCCCcHHHhHHh-----HHHHHh
Q 003434 671 TVHERVRTRIITDIMKASFDGFLLVLLAGGPSRAFTRQDSQIIEDDFKSLKDLFWANGDGLPIELIDKF-----SATARG 745 (820)
Q Consensus 671 ~l~~~~~~rvl~~l~ka~~e~~l~VLL~gGpsR~fs~~d~~~le~dL~~Lk~fF~A~GeGLp~elve~~-----~~~l~~ 745 (820)
.+.++++--+++.+++|++++.+.-|+--+ =-||.+-.--|..||..++++-..+--||..|+.++- .+.+++
T Consensus 295 ~L~~~aq~~~l~~~l~a~~eAWLdhIl~~k--IKFS~~GAlQL~~DF~~Vr~wl~~e~~~Ls~e~rq~Ll~l~v~r~~dg 372 (450)
T PF14923_consen 295 GLPPEAQIPALSQALTAMLEAWLDHILMHK--IKFSLQGALQLRQDFGYVRDWLESECSGLSPELRQTLLSLEVFRRCDG 372 (450)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHcc--ceeeHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHhccHHHHHHHH
Confidence 466788888888999999999999777431 1288888888999999999999999999999987774 578888
Q ss_pred hcccccCChHHHHHHH
Q 003434 746 VLPLFRTDTESLIERF 761 (820)
Q Consensus 746 vL~L~~~~Td~LIe~f 761 (820)
++.+--+....-|...
T Consensus 373 v~~lLlqqP~~~~~~~ 388 (450)
T PF14923_consen 373 VGLLLLQQPGPKISMT 388 (450)
T ss_pred HHHHHhcCCCCccccc
Confidence 8884444344444443
No 21
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=34.76 E-value=3.8e+02 Score=31.82 Aligned_cols=166 Identities=15% Similarity=0.223 Sum_probs=84.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhc-------cchhhhccCccccccHHHHHHHHHhHHHHHHHHhhhhc-HHHHHHhhhh
Q 003434 311 NPLPVLAILAKDVGELAIKERRVF-------SPILKRWHPLAAGVAVATLHACYGNEIKQFISSIVELT-PDAVQVLRAA 382 (820)
Q Consensus 311 ~~~~~l~~La~~i~~la~~e~~~y-------sPiL~~~~p~a~~Vaa~~Lh~lyg~~Lk~~l~~~~~lt-~~~~~vl~aa 382 (820)
....+|..+.+++..+-..=.+.+ .|+.+..+|.+|.+.-+. . ....++..++....+- +..... +.+
T Consensus 354 ~~~~ll~~~~~ei~~~~~~f~~~~~~~~~~~~~~~~~~Ppvag~i~w~r--~-L~~ri~~~~~~~~~~~g~~~~~~-~~~ 429 (579)
T PF08385_consen 354 KYEQLLQQFKEEIDQLKKIFDNQKEKSETDNPPLPRNLPPVAGAIIWAR--Q-LERRIKEPMQRLKSLLGPDWLDS-PEG 429 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccccccccCCcHHHHHHHHHH--H-HHHHHhHHHHHHHHhccchhhcc-hhH
Confidence 445777778888887755433333 356655666666663211 2 3344555555554433 111111 111
Q ss_pred hHH-HHH--HHHHhhhcccCCCCCcccccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhc-cCCcccCCCCCCCc
Q 003434 383 DKL-EKD--LVQIAVEDSVDSDDGGKAIIREMPPYEAEGAIANLVKMWLKTRIDRLKEWVDRNLQ-QEDWNPQQNQEGFA 458 (820)
Q Consensus 383 d~L-ek~--L~~i~~e~~~~~~d~~~~~~~~l~P~~ie~~f~~~V~~Wl~~~~~k~~ewV~rAie-~E~w~P~s~~~~hS 458 (820)
..+ .++ |.+ .+..+.......|+++........+++.+= ...=....-...|.
T Consensus 430 ~~~~~~~~~l~~-----------------------~l~~~e~~~~~~W~~~i~~~~~~~L~~~ll~~~~~~~~~l~VNfd 486 (579)
T PF08385_consen 430 KELKQKYNELLK-----------------------KLDEYEKEIFEEWLNEIESNINSSLSQPLLKRRSDENGRLVVNFD 486 (579)
T ss_pred HHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHhhccccceeeeccCCCceEEEeCC
Confidence 111 111 111 234456677889999888888666666555 11111111235688
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCCC-------CcCchHHHHHHHHHHHHHHHHHH
Q 003434 459 SSAVEVLRIIDETLDAFFQLPIPM-------HPALLPDLMAGLDRCLQYYVTKA 505 (820)
Q Consensus 459 ~SvVDvf~~~~etvd~f~~L~wp~-------~~~~l~~L~~gi~~~l~~Y~~~v 505 (820)
+..+.+++=+..-.-. +++.|. ...-+..++..+..+++.|-..+
T Consensus 487 ~~l~~l~rEvr~l~~l--g~~iP~~~~~~~~~~~~l~~~~~~L~~~~~~yn~i~ 538 (579)
T PF08385_consen 487 PELLTLLREVRYLQSL--GFEIPEEILELYEQAEKLYPYAESLQEIVRFYNSII 538 (579)
T ss_pred HHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777766644332 445552 11223455555666666665555
No 22
>KOG4032 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.98 E-value=3.6e+02 Score=27.86 Aligned_cols=78 Identities=17% Similarity=0.177 Sum_probs=53.7
Q ss_pred CCchHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhhhhcCCCchhHHhHHHHHHhHHHHHHHHHhhhHhhhcC
Q 003434 158 GMNQMLHNMCFTWVLFHRFVATGQADTDLLYAADNQLAEVAKDAKATKDPEYAKILSSTLTSIMSWAEKRLLAYHDTFDD 237 (820)
Q Consensus 158 gI~~~~h~vcf~wVlf~qfv~t~e~e~~lL~~a~~~l~ev~~d~k~~~~~~~~~~l~s~l~~i~~W~~k~L~~yH~~f~~ 237 (820)
|++--=|..=++|+++..|..+..|+...+..-+..+-.-.-+.+...++.|. | -..|.+|..++.+
T Consensus 37 G~dsqek~~w~~~~~~d~~~~~~dV~~~eieE~L~~~l~~EFnt~~eDDS~~~---------i----a~~L~n~f~~~~~ 103 (184)
T KOG4032|consen 37 GRDSQEKAKWITGVVVDYFTMNKDVKAREIEELLLELLGDEFNTKVEDDSLPE---------I----AQLLLNLFHDIQN 103 (184)
T ss_pred CccHHHHHHHHHhhHhhhcccccchhHHHHHHHHHHHHHHHhhccccCCCHHH---------H----HHHHHHHHHHHHc
Confidence 78888889999999999999887777665554444332212223334455553 1 3568888888999
Q ss_pred CChHHHhHHHH
Q 003434 238 GNLETMDGIVS 248 (820)
Q Consensus 238 ~~~~~m~~~~~ 248 (820)
+||..++.+++
T Consensus 104 ~N~~~ieells 114 (184)
T KOG4032|consen 104 GNYAIIEELLS 114 (184)
T ss_pred ccHHHHHHHHH
Confidence 99987777644
No 23
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=23.91 E-value=1.5e+03 Score=28.33 Aligned_cols=131 Identities=15% Similarity=0.109 Sum_probs=81.8
Q ss_pred HhhhhcHHHHHHhhhhhHHHHHHHHHhhhcccCCCCCcccccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhccC
Q 003434 367 SIVELTPDAVQVLRAADKLEKDLVQIAVEDSVDSDDGGKAIIREMPPYEAEGAIANLVKMWLKTRIDRLKEWVDRNLQQE 446 (820)
Q Consensus 367 ~~~~lt~~~~~vl~aad~Lek~L~~i~~e~~~~~~d~~~~~~~~l~P~~ie~~f~~~V~~Wl~~~~~k~~ewV~rAie~E 446 (820)
+++.+++++...+-. .++..|.+-+-.....++++-+.|..+++.|-.+.+..+++-+-..+....+...-+.++ |
T Consensus 418 kv~q~~eev~~~vs~--~~~eELid~~~~~fhp~~~~~g~yk~yl~~~i~~~l~~nl~dr~~~~~~~~i~q~qqe~~--~ 493 (749)
T KOG0448|consen 418 KVEQLTEEVTFKVSS--DLEEELIDAFDCPFHPSPKYLGQYKCYLPAFIEKDLGSNLVDRCSTESENVILQRQQELT--E 493 (749)
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHhcCCCCCCccccceeeehhhHHHHHHHhHHHHHHhcchHHHHHHHHHHHHH--H
Confidence 444455555544332 344445544333333444555556666666666677777777666666665555555444 3
Q ss_pred CcccCCCCCCCcccHHHHHHHHHHHHHHHhCCCCCC-----CcCchHHHHHHHHHHHHHHHHH
Q 003434 447 DWNPQQNQEGFASSAVEVLRIIDETLDAFFQLPIPM-----HPALLPDLMAGLDRCLQYYVTK 504 (820)
Q Consensus 447 ~w~P~s~~~~hS~SvVDvf~~~~etvd~f~~L~wp~-----~~~~l~~L~~gi~~~l~~Y~~~ 504 (820)
.+.|+-+.+ +-+.+--+|+. +..+.-+.|+++. ..+...+|+=|....++++..-
T Consensus 494 ~i~~i~~~~-~~~~l~~vv~~--q~F~~~~~l~~~~L~~df~ed~~F~ft~g~~~~~~r~~~p 553 (749)
T KOG0448|consen 494 EIVPILKNE-FDSDLLVVVRS--QMFRLSYHLNCKKLKADFQEDLEFRFTWGWFALILRFLGP 553 (749)
T ss_pred HHhhhccch-hhhhHHHHHHh--hhhhhhhccchhhhhhhhhhhhhhhhccchHHHHHHhhcC
Confidence 577776666 88888889998 9999999999882 4556677777777776655433
No 24
>COG3827 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.83 E-value=74 Score=33.45 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=34.8
Q ss_pred hcccchhhhcccc--cCCCCccchHHHH-HHHHHHHHHHHHhhHHHHHhHHHH
Q 003434 633 FHDLSHVLWDGLY--VGEPSSSRIEPLL-QELERNLLIISDTVHERVRTRIIT 682 (820)
Q Consensus 633 f~Dl~~~~~~~Ly--~~~v~~~rI~PlL-~~Ld~~L~~l~~~l~~~~~~rvl~ 682 (820)
|.|+++.+..+-- -.+++...++|+| +.||+||-+|.+.|+..--.||++
T Consensus 175 F~dLs~a~~~~~rrsleE~a~eMLRPmLqdWLDkNLPtLVErLVrEEIeRv~R 227 (231)
T COG3827 175 FGDLSLAFNSSSRRSLEEMAAEMLRPMLQDWLDKNLPTLVERLVREEIERVVR 227 (231)
T ss_pred HHHHHHHhcccccccHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHc
Confidence 3366665532100 1123566789999 679999999999999988888864
No 25
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=20.99 E-value=7.2e+02 Score=29.34 Aligned_cols=182 Identities=17% Similarity=0.242 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhccCc--cccccHHHHHHHHHhHHHHHHHHhh------------hhcHHHHHHhhhh
Q 003434 317 AILAKDVGELAIKERRVFSPILKRWHPL--AAGVAVATLHACYGNEIKQFISSIV------------ELTPDAVQVLRAA 382 (820)
Q Consensus 317 ~~La~~i~~la~~e~~~ysPiL~~~~p~--a~~Vaa~~Lh~lyg~~Lk~~l~~~~------------~lt~~~~~vl~aa 382 (820)
..-|..+.+|.+...++|.|+-+--|-. ...+....| ..|-..|.+.++... .-..++..++.++
T Consensus 176 t~~A~~~~~Ll~~it~ry~~L~~~~~rl~Fl~~iql~ll-d~~~~~L~~~~~~~~~~~s~~~~~~~~~~l~~l~~~lnsa 254 (494)
T PF04437_consen 176 TKSAERFVKLLESITDRYRPLPSLSHRLRFLIDIQLPLL-DDYHDRLSQSLEAFESSTSTLASLSGDSGLERLCKILNSA 254 (494)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHH---GG--GHHHHHHHH-HHTHHHHHHHHHHHHHT----SCEEHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccchhhccCCchHHHHHHHHHHH
Confidence 3478888899999999998887655543 445644444 444455555433321 1224566677777
Q ss_pred hHHHHHHHHH-----hhhcccCC-CCCcc---cccccC-----CCc-cchhhhHHHHHHHHHHHHHHHHHHHHhhhc---
Q 003434 383 DKLEKDLVQI-----AVEDSVDS-DDGGK---AIIREM-----PPY-EAEGAIANLVKMWLKTRIDRLKEWVDRNLQ--- 444 (820)
Q Consensus 383 d~Lek~L~~i-----~~e~~~~~-~d~~~---~~~~~l-----~P~-~ie~~f~~~V~~Wl~~~~~k~~ewV~rAie--- 444 (820)
++++..|.+. ++|..+.. .+.+. .+..+. -=| +.-+.+..+..+|.+...+.+..=++.+++
T Consensus 255 ~yi~~~L~eW~e~~~Flq~~~~~~~~~~~~~~~~~~~~~~~~~siFde~i~~y~~l~~~~~~~iv~~v~~~~k~~lk~Y~ 334 (494)
T PF04437_consen 255 NYIENVLREWSEDVFFLQMRAKESESSNNSLEDIANETSSEEGSIFDETISAYEKLRKRMLESIVDRVVKEFKASLKAYF 334 (494)
T ss_dssp HHHHHHHHHHCTSHHHH------------HHHHHHHHHTT--S-TTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhcCCCeeehhhccchhhcccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7766554422 11110000 00000 000000 001 111223334445555544444444444433
Q ss_pred -cCCcccCCCC-----CCCcccHHHHHHHHHHHHHHHhCCCCCCCcCchHHHHHHHHHHHHHHH
Q 003434 445 -QEDWNPQQNQ-----EGFASSAVEVLRIIDETLDAFFQLPIPMHPALLPDLMAGLDRCLQYYV 502 (820)
Q Consensus 445 -~E~w~P~s~~-----~~hS~SvVDvf~~~~etvd~f~~L~wp~~~~~l~~L~~gi~~~l~~Y~ 502 (820)
..+|...... .--|++.+..+..+...+..+.+. .| +..+..+.+.+-..++.|.
T Consensus 335 k~~~W~~~~~~~~~~~~~~S~el~~~L~~L~~~L~~L~~~-L~--~~~f~~i~r~ia~~l~~~l 395 (494)
T PF04437_consen 335 KRSQWSSIESPSDSSPLSPSPELVPALSLLRSRLSFLERS-LP--PADFRRIWRRIASKLDDYL 395 (494)
T ss_dssp T--GGGT-------------GGGHHHHHHHHHHHHHHHTS-----HHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHH-cC--HHHHHHHHHHHHHHHHHHH
Confidence 3688766544 347899999999999999999998 55 4455556666666666554
Done!