Query 003434
Match_columns 820
No_of_seqs 189 out of 225
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 01:04:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003434.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003434hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swh_A MUNC13-1, protein UNC-1 100.0 8.9E-50 3.1E-54 436.4 14.9 297 411-764 4-338 (341)
2 2fji_1 Exocyst complex compone 98.9 6.1E-08 2.1E-12 108.5 20.0 333 417-805 6-355 (399)
3 2a2f_X Exocyst complex compone 96.6 0.11 3.8E-06 56.3 19.6 177 564-750 138-316 (325)
4 3hr0_A COG4; conserved oligome 94.6 0.069 2.4E-06 56.3 8.3 218 564-806 21-255 (263)
5 3fhn_A Protein transport prote 89.0 24 0.00084 41.8 21.1 252 421-731 363-639 (706)
6 3fx7_A Putative uncharacterize 26.8 41 0.0014 29.7 3.1 25 30-54 67-91 (94)
7 1orj_A Flagellar protein FLIS; 22.1 48 0.0016 30.9 2.8 44 119-164 81-125 (130)
8 1m9i_A Annexin VI; calcium-bin 21.4 7.3E+02 0.025 29.1 13.3 151 276-445 296-449 (672)
9 1zw0_A Type III secretion prot 16.8 96 0.0033 25.5 3.0 20 30-50 37-56 (66)
10 4g26_A Pentatricopeptide repea 15.2 1.2E+03 0.04 25.8 13.5 90 114-215 55-149 (501)
No 1
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=100.00 E-value=8.9e-50 Score=436.45 Aligned_cols=297 Identities=16% Similarity=0.293 Sum_probs=225.7
Q ss_pred CCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhccCCcccCC---CCCCCcccHHHHHHHHHHHHHHHhCCCCCCC---c
Q 003434 411 MPPYEAEGAIANLVKMWLKTRIDRLKEWVDRNLQQEDWNPQQ---NQEGFASSAVEVLRIIDETLDAFFQLPIPMH---P 484 (820)
Q Consensus 411 l~P~~ie~~f~~~V~~Wl~~~~~k~~ewV~rAie~E~w~P~s---~~~~hS~SvVDvf~~~~etvd~f~~L~wp~~---~ 484 (820)
++.| +.||.|||++|+++..+++.+||++|++.|+|+|.+ ++.+||+||||+|+||+|++++|.+|+||+. .
T Consensus 4 ~~~~--~~wF~~~V~~Wl~~~~~k~~~~v~~Ai~~Dk~~~~~~~~~~~~hSsSvvDif~~~~Q~~~~~~~L~WpD~~~~~ 81 (341)
T 3swh_A 4 VPEY--PAWFEPFVIQWLDENEEVSRDFLHGALERDKKDGFQQTSEHALFSCSVVDVFSQLNQSFEIIKKLECPDPQIVG 81 (341)
T ss_dssp -------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSSSCCSCTHHHHHHHHHHHHHHHHHHSCCSCHHHHH
T ss_pred CCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccCccccchHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 4555 889999999999999999999999999999998875 7889999999999999999999999999973 5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhccCCcccCCCCCccccccCCCchhHHHhhhcCCCCcccccccccccCCccccccCc
Q 003434 485 ALLPDLMAGLDRCLQYYVTKAKSGCGSRNTYVPTMPALTRCTTGSKFQGVWKKKEKSPNSQKKNSQVATMNGEISFRVPQ 564 (820)
Q Consensus 485 ~~l~~L~~gi~~~l~~Y~~~v~~~~~~k~~~~p~~P~lTr~~~~~~~~~~~Kkk~~~~~~~e~~~~~~~~~~~~s~~~~~ 564 (820)
.|++.|++.|.+++..||+.+.... .. +..+ .+...
T Consensus 82 ~f~t~l~~~i~~~~~~Y~~~l~~~~----------------------~~-~~~~---------------------e~~~~ 117 (341)
T 3swh_A 82 HYMRRFAKTISNVLLQYADIVSKDF----------------------AS-YCSK---------------------EKEKV 117 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------------------HH-HCCT---------------------TSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------------Hh-hhhh---------------------hcccc
Confidence 6789999999999999999995222 10 0000 01134
Q ss_pred ceEEeccHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccHHHHHHHHHHHHHHHhhhHhhcccchhhhccc
Q 003434 565 LCIRINSFHRIKSELDVLEKRVITHLRNCESAHAEDFSNGLGKKFELTPAACVEGVQQLSEAVAYKIVFHDLSHVLWDGL 644 (820)
Q Consensus 565 lCVrLNnLe~i~~~L~~Lek~i~~~~~~~~s~~~~~~~~~l~~~F~~s~~~~~~~i~~l~e~~a~klvf~Dl~~~~~~~L 644 (820)
+||.+||+||+|.+|+++.+.| .|....+ ..+...+..+..++..+++++...+.|+.. ++++++.+-.
T Consensus 118 ~Cv~lNNie~lR~~L~~l~~~l--~~~~l~~--------~~~~~~~~lq~~l~~vl~~l~~~~~~~~~~-~i~~~v~~m~ 186 (341)
T 3swh_A 118 PCILMNNTQQLRVQLEKMFEAM--GGKELDA--------EASGTLKELQVKLNNVLDELSHVFATSFQP-HIEECVRQMG 186 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--TTTTSCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHH
T ss_pred hhhhcccHHHHHHHHHHHHHhc--chhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 7999999999999999999998 4543221 344566677888888888888888878764 6666544311
Q ss_pred ---c--cC--C-----------CCccchHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHH----------
Q 003434 645 ---Y--VG--E-----------PSSSRIEPLLQELERNLLIISDTVHERVRTRIITDIMKASFDGFLLVL---------- 696 (820)
Q Consensus 645 ---y--~~--~-----------v~~~rI~PlL~~Ld~~L~~l~~~l~~~~~~rvl~~l~ka~~e~~l~VL---------- 696 (820)
+ .| . .++++|+|||+|||++|.+++++|++++++||++++|++++++++.++
T Consensus 187 ~~l~~i~~~~~~~~~~~~~~~~~~~~ai~PLm~yLd~~L~~l~~~L~~~~f~rvL~~lW~~~l~~l~~~i~lP~~~~~~~ 266 (341)
T 3swh_A 187 DILSQVKGTGNVPASACSSVAQDADNVLQPIMDLLDSNLTLFAKICEKTVLKRVLKELWKLVMNTMERTIVLPPEFSKLK 266 (341)
T ss_dssp HHHHTCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCSSS
T ss_pred HHHHhhcccccCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhhhH
Confidence 1 11 0 136789999999999999999999999999999999999999999987
Q ss_pred --hcCCCCCCCChhhHHHHHHHHHHHHHHhhhCCCCCcHHHhHH--hHHHHHhhcccccCChHHHHHHHHHH
Q 003434 697 --LAGGPSRAFTRQDSQIIEDDFKSLKDLFWANGDGLPIELIDK--FSATARGVLPLFRTDTESLIERFRRV 764 (820)
Q Consensus 697 --L~gGpsR~fs~~d~~~le~dL~~Lk~fF~A~GeGLp~elve~--~~~~l~~vL~L~~~~Td~LIe~f~~~ 764 (820)
++||++|.+++++|++++++|+.|++||||||+|||.+++|+ ++++++++|+||+++|++||++|+.+
T Consensus 267 ~~~~~~~~r~~~~~~~~~l~~~L~~L~~fFhA~G~GL~~~~Leks~~~~~l~~~L~L~~~~T~~LI~~f~~~ 338 (341)
T 3swh_A 267 DHMVREEAKSLTPKQCAVVELALDTIKQYFHAGGVGLKKTFLEKSPDLQSLRYALSLYTQATDLLIKTFVQT 338 (341)
T ss_dssp CC----------CTTHHHHHHHHHHHHHHHHGGGTSCCHHHHHTCHHHHHHHHHHHHC--------------
T ss_pred hhhcccccCCCCHHHHHHHHHHHHHHHHHhccCCCCCCHHHHccChhHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 578999999999999999999999999999999999999987 59999999999999999999999754
No 2
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=98.87 E-value=6.1e-08 Score=108.48 Aligned_cols=333 Identities=14% Similarity=0.176 Sum_probs=206.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhccC--Ccc-----cCC--CCCCCcccHHHHHHHHHHHHHHHhCCCCC-CCcCc
Q 003434 417 EGAIANLVKMWLKTRIDRLKEWVDRNLQQE--DWN-----PQQ--NQEGFASSAVEVLRIIDETLDAFFQLPIP-MHPAL 486 (820)
Q Consensus 417 e~~f~~~V~~Wl~~~~~k~~ewV~rAie~E--~w~-----P~s--~~~~hS~SvVDvf~~~~etvd~f~~L~wp-~~~~~ 486 (820)
++....++..|++....++.+|++|+++.| .|. |.. +...|+++++|||.|++|.++.-....=. ....+
T Consensus 6 ~~~~~~L~~~Y~~~i~~~~~eW~~nil~~E~~~w~~r~~~P~~d~~g~~~t~~~~dvfqml~eql~~a~~~~~~~l~~~v 85 (399)
T 2fji_1 6 DKEKETLFKDYLNLIVVKMTEWIGNLEKAEFDVFLERSTPPHSDSDGLLFLDGTKTCFQMFTQQVEVAAGTNQAKILVGV 85 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCEECTTSCEECHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCeeCCchHHHHHHHHHHHHHHHhCCCcccHHHH
Confidence 566788999999999999999999999998 676 222 22459999999999999999998876522 11222
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccCCcccCCCCCccccccCCCchhHHHhhhcCCCCcccccccccccCCccccccCcce
Q 003434 487 LPDLMAGLDRCLQYYVTKAKSGCGSRNTYVPTMPALTRCTTGSKFQGVWKKKEKSPNSQKKNSQVATMNGEISFRVPQLC 566 (820)
Q Consensus 487 l~~L~~gi~~~l~~Y~~~v~~~~~~k~~~~p~~P~lTr~~~~~~~~~~~Kkk~~~~~~~e~~~~~~~~~~~~s~~~~~lC 566 (820)
+......+..-...|.+.+.+.+ . .+. + .| .+.++.. +.. .++ +......++.+|
T Consensus 86 ~~~~~~~L~~f~~~~~~~l~~~~-~--~~~------~-~~-----~~~~~~~-~~~-~~~--------~~~~~~~~e~li 140 (399)
T 2fji_1 86 VERFSDLLTKRQKNWISKISEEI-K--KQI------N-YN-----HKYDIDP-ESI-TPE--------DECPGGLVEYLI 140 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-H--HHH------H-HH-----HTTTTGG-GSC-CTT--------TCCCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-H--HHh------c-cc-----ccccccc-ccc-Ccc--------ccccccHHHhhh
Confidence 23333333333333433332111 0 000 0 00 0000000 000 000 001111245578
Q ss_pred EEeccHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccHHHHHHHHHHHHHHHhhhHhhcccchhhhccccc
Q 003434 567 IRINSFHRIKSELDVLEKRVITHLRNCESAHAEDFSNGLGKKFELTPAACVEGVQQLSEAVAYKIVFHDLSHVLWDGLYV 646 (820)
Q Consensus 567 VrLNnLe~i~~~L~~Lek~i~~~~~~~~s~~~~~~~~~l~~~F~~s~~~~~~~i~~l~e~~a~klvf~Dl~~~~~~~Ly~ 646 (820)
..+||-......+.+|.+.+...+.... .+.+...|+.+.....+..++-+..+. ..+|.|++..|-. ++.
T Consensus 141 A~~Nn~~~~~e~~~~l~~~~~~~~~~~~-------~~~~~~~l~~~~~~f~~l~~~~~~~L~-~~if~dl~p~~~~-lft 211 (399)
T 2fji_1 141 AVSNDQMKAADYAVAISSKYGKLVSKVY-------EKQITNHLEGTLDGFAEVAQCSSLGLI-TLMFDDLRKPYQE-IFS 211 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCHHH-------HHHHHHHHHTTHHHHHHHHHHHHHHHH-HHHHHTTHHHHTT-TTS
T ss_pred hhhccHHHHHHHHHHHHHHHHHhccHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-hCC
Confidence 8889999888888888887643222110 001233455544444443333333332 2456788865421 121
Q ss_pred CC-CCccchHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCC---hhhHHHHHHHHHHHHH
Q 003434 647 GE-PSSSRIEPLLQELERNLLIISDTVHERVRTRIITDIMKASFDGFLLVLLAGGPSRAFT---RQDSQIIEDDFKSLKD 722 (820)
Q Consensus 647 ~~-v~~~rI~PlL~~Ld~~L~~l~~~l~~~~~~rvl~~l~ka~~e~~l~VLL~gGpsR~fs---~~d~~~le~dL~~Lk~ 722 (820)
.. ..+..+..++..++..+.-+...+.+..+..++.++...++-.++..|+. ...|. ....+.|..|.+.|++
T Consensus 212 ~~W~~~~~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~~~~~~v~~Yl~~l~~---~~~~~~~~~~~~~~l~~D~~~l~~ 288 (399)
T 2fji_1 212 KTWYMGSQAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSF---EHSFKNKNNKFLEAMKRDFEIFYQ 288 (399)
T ss_dssp GGGTTCCHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHGGGG---CCCCCCGGGHHHHHHHHHHHHHHH
T ss_pred chhcCCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCchhHHHHHHHHHHHHHHHH
Confidence 11 12237899999999999999999999999999999999999999998885 22344 6778999999999999
Q ss_pred HhhhCCCCCc--HHHhHHhHHHHHhhcccccCCh-HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcccchhhhc
Q 003434 723 LFWANGDGLP--IELIDKFSATARGVLPLFRTDT-ESLIERFRRVTLETYGSSARSRLPLPPTSGQWNPTEPNTLLRVLC 799 (820)
Q Consensus 723 fF~A~GeGLp--~elve~~~~~l~~vL~L~~~~T-d~LIe~f~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~tilRVLc 799 (820)
||-.-|.+-. ...+......+..+.. ..+++ +.+.+.|..... . .|+ -.++.+-+||.
T Consensus 289 ~f~~~~~~~~~~~~~v~~~~~~l~~l~~-L~~d~~~~i~~~~~~l~~---------~--------ypD-~~~~~V~aiL~ 349 (399)
T 2fji_1 289 LFVKVLDGNESKDTLITQNFTVMEFFMD-LSCEPIDSILDIWQKYLE---------V--------YWD-SRIDLLVGILK 349 (399)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHHHHHH-HHHSCGGGHHHHHHHHHT---------T--------CTT-CCSHHHHHHHT
T ss_pred HHHHhccccchhhHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHH---------h--------CCC-CCHHHHHHHHH
Confidence 9987665432 2345666667777777 66788 777777755532 1 122 35889999999
Q ss_pred ccCChH
Q 003434 800 YRNDEA 805 (820)
Q Consensus 800 hR~D~~ 805 (820)
-|.|=.
T Consensus 350 ~R~D~~ 355 (399)
T 2fji_1 350 CRKDVS 355 (399)
T ss_dssp TCTTCC
T ss_pred hccCCC
Confidence 998643
No 3
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=96.58 E-value=0.11 Score=56.34 Aligned_cols=177 Identities=15% Similarity=0.108 Sum_probs=111.6
Q ss_pred cceEEeccHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccHHHHHHHHHHHHHHHhhhHh-hcccchhhhc
Q 003434 564 QLCIRINSFHRIKSELDVLEKRVITHLRNCESAHAEDFSNGLGKKFELTPAACVEGVQQLSEAVAYKIV-FHDLSHVLWD 642 (820)
Q Consensus 564 ~lCVrLNnLe~i~~~L~~Lek~i~~~~~~~~s~~~~~~~~~l~~~F~~s~~~~~~~i~~l~e~~a~klv-f~Dl~~~~~~ 642 (820)
++.-.+=|++|.-.....+|+-+.. ...++++.. ......|..++.++.+.|-. .+..|+- |.++-.+=|.
T Consensus 138 qi~Qi~iNl~~le~ac~~le~~l~~-~~~~~~~~~----l~a~~~f~~~r~~Ae~~I~~---~v~~KIDdfl~la~yDW~ 209 (325)
T 2a2f_X 138 QLIQIIIDTQYLEKAGPFLDEFVCH-MTNTERSVS----QTPSAMFHVARQDAEKQVGL---RICSKIDEFFELSAYDWL 209 (325)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHH-HHTCCC-----------CCSCCCTTHHHHHHHH---HHHHHHHHHHTTCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCcccc----hhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcccCCC
Confidence 3444456788888888888887754 222222111 13467788888776655544 3344543 3344332232
Q ss_pred ccccCCCCccchHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHH
Q 003434 643 GLYVGEPSSSRIEPLLQELERNLLIISDTVHERVRTRIITDIMKASFDGFLLVLLAGGPSRAFTRQDSQIIEDDFKSLKD 722 (820)
Q Consensus 643 ~Ly~~~v~~~rI~PlL~~Ld~~L~~l~~~l~~~~~~rvl~~l~ka~~e~~l~VLL~gGpsR~fs~~d~~~le~dL~~Lk~ 722 (820)
.--.++-++.-|..+..||+..... -.+|...++..+..+.|+.+=+.++-.|++ ..-|.++..-+.-++-|++.|.+
T Consensus 210 ~~~~~~~ps~yi~dli~fL~~~f~s-l~~LP~~v~~~~~~~a~~his~~l~~~Ll~-~~vk~in~~av~~~~~Dv~~lE~ 287 (325)
T 2a2f_X 210 LVEPPGIASAFITDMISYLKSTFDS-FAFKLPHIAQAACRRTFEHIAEKIYSIMYD-EDVKQISTGALTQINLDLMQCEF 287 (325)
T ss_dssp ----CCSCCHHHHHHHHHHHHHHHT-TTTTSHHHHHHHHHHHHHHHHHHHHHHHTC-------CCTTHHHHHHHHHHHHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhcCHHHHHHHHHHHHHHHH
Confidence 2223334677799999999999995 668899999999999999999999998883 33466899999999999999999
Q ss_pred HhhhCC-CCCcHHHhHHhHHHHHhhcccc
Q 003434 723 LFWANG-DGLPIELIDKFSATARGVLPLF 750 (820)
Q Consensus 723 fF~A~G-eGLp~elve~~~~~l~~vL~L~ 750 (820)
|=-.++ .|+....+......+++.+.|+
T Consensus 288 fa~~~~v~~l~~~~L~~~F~eLrQli~Ll 316 (325)
T 2a2f_X 288 FAASEPVPGLKEGELSKYFLRNRQLLDLL 316 (325)
T ss_dssp HHTTCSSSSCCSSTTGGGGHHHHHHHHHH
T ss_pred HHHhCCCCCcccchHHHHHHHHHHHHHHH
Confidence 943322 2554444455555577777755
No 4
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=94.65 E-value=0.069 Score=56.26 Aligned_cols=218 Identities=15% Similarity=0.208 Sum_probs=134.8
Q ss_pred cceEEeccHHHHHHHHHHHHHHHHhhhcccccccc-----ccc----ccccccccc-ccHHHHHHHHHHHH-HHHhhhHh
Q 003434 564 QLCIRINSFHRIKSELDVLEKRVITHLRNCESAHA-----EDF----SNGLGKKFE-LTPAACVEGVQQLS-EAVAYKIV 632 (820)
Q Consensus 564 ~lCVrLNnLe~i~~~L~~Lek~i~~~~~~~~s~~~-----~~~----~~~l~~~F~-~s~~~~~~~i~~l~-e~~a~klv 632 (820)
.-||.|||++-...-+.+|-+.+...+....+... ... ..++.+ |. ..+.-++.+++++. ..+..|+.
T Consensus 21 ~Flv~LNnld~s~eyi~rL~~~l~~~l~~~Fp~~~d~~~~~~kv~~~l~~l~~-~~~k~~~ll~~gi~~Lf~~~ikprLr 99 (263)
T 3hr0_A 21 SFLVTLNNVEVCSENISTLKKTLESDCTKLFSQGIGGEQAQAKFDSCLSDLAA-VSNKFRDLLQEGLTELNSTAIKPQVQ 99 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred hHhheeccHHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 35999999965555555554444333332222110 000 001221 21 22566788888886 57777753
Q ss_pred -----hcccchhhhcccccC-CCCccchHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 003434 633 -----FHDLSHVLWDGLYVG-EPSSSRIEPLLQELERNLLIISDTVHERVRTRIITDIMKASFDGFLLVLLAGGPSRAFT 706 (820)
Q Consensus 633 -----f~Dl~~~~~~~Ly~~-~v~~~rI~PlL~~Ld~~L~~l~~~l~~~~~~rvl~~l~ka~~e~~l~VLL~gGpsR~fs 706 (820)
|.|....+-+.-|.. +..+.-+..+...+++-|.-+...+...++++++.-+...+-..+++.++. ..|+
T Consensus 100 ~~l~~f~~~~y~l~eee~~~~e~~d~~~~~F~~~w~~ll~p~k~~Lt~~~y~~Ll~~~~~~la~~lE~~i~~----~~fn 175 (263)
T 3hr0_A 100 PWINSFFSVSHNIEEEEFNDYEANDPWVQQFILNLEQQMAEFKASLSPVIYDSLTGLMTSLVAVELEKVVLK----STFN 175 (263)
T ss_dssp HHHHGGGGSCBSCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTT----CCBC
T ss_pred HHHHHHhcccccCCHhHHhhhhcccHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHh----CCcC
Confidence 333322221110100 123445778888889999999999999999999999999999999998885 3488
Q ss_pred hhhHHHHHHHHHHHHHHhhhCCCCCcHHHhHHhHHHHHhhcccccCChHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCC
Q 003434 707 RQDSQIIEDDFKSLKDLFWANGDGLPIELIDKFSATARGVLPLFRTDTESLIERFRRVTLETYGSSARSRLPLPPTSGQW 786 (820)
Q Consensus 707 ~~d~~~le~dL~~Lk~fF~A~GeGLp~elve~~~~~l~~vL~L~~~~Td~LIe~f~~~~~~~~g~~~~~~~~~~~~~~~~ 786 (820)
.--.-.+|.|+..|..||..-|+ -.+.|+..+ +.++..+...+..+=+..|. .+..| ...|
T Consensus 176 ~lGal~LdrDvr~li~~~~~~~~---~~lRekF~R-L~QI~~lLnle~~eev~d~~---~~~~~------------~~~W 236 (263)
T 3hr0_A 176 RLGGLQFDKELRSLIAYLTTVTT---WTIRDKFAR-LSQMATILNLERVTEILDYW---GPNSG------------PLTW 236 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSC---TTHHHHTHH-HHHHHHHHTCSSGGGGGGTS---GGGGT------------TCCC
T ss_pred chhHHHHHHHHHHHHHHHHhccc---hhhhHHHHH-HHHHHHHHcCCChHHHHHHh---cccCC------------Cccc
Confidence 88889999999999999987443 224455444 77777776666543111121 10011 1346
Q ss_pred CCCCcccchhhhcccCChHH
Q 003434 787 NPTEPNTLLRVLCYRNDEAA 806 (820)
Q Consensus 787 ~~~d~~tilRVLchR~D~~A 806 (820)
. -.|+-+-|||..|.|-..
T Consensus 237 ~-Ls~~E~r~il~lRvDf~~ 255 (263)
T 3hr0_A 237 R-LTPAEVRQVLALRIDFRS 255 (263)
T ss_dssp C-SCHHHHHHHHTTBTTSCH
T ss_pred c-CCHHHHHHHHHhhccCCH
Confidence 3 779999999999988543
No 5
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=89.03 E-value=24 Score=41.82 Aligned_cols=252 Identities=12% Similarity=0.171 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCCCcccHHHHHHHHHHHHH---HHhCCCCCCCcCc-hHHHHHHHHH
Q 003434 421 ANLVKMWLKTRIDRLKEWVDRNLQQEDWNPQQNQEGFASSAVEVLRIIDETLD---AFFQLPIPMHPAL-LPDLMAGLDR 496 (820)
Q Consensus 421 ~~~V~~Wl~~~~~k~~ewV~rAie~E~w~P~s~~~~hS~SvVDvf~~~~etvd---~f~~L~wp~~~~~-l~~L~~gi~~ 496 (820)
.....+|++--.+-..+.++..+..++ .-..||+++.++++.+-+ -|+.+.-...+.+ .+-....--.
T Consensus 363 ~~~f~~WL~~Ek~fA~~rf~~Ii~s~d--------~lt~sA~~~~~LLe~It~~l~~~~~~rY~~L~~~~~Kl~f~Iqiq 434 (706)
T 3fhn_A 363 DEVWEKWINYEVEMANRQFINITKNPE--------DFPKSSQNFVKLINKIYDYLEPFYDLDFDLLVRYKLMTCSLIFMN 434 (706)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSGG--------GGGGHHHHHHHHHHHHHHHHSHHHHCCCGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc--------cCCHHHHHHHHHHHHHHHhccccchhhcccccchHHHHHHHHHHh
Confidence 445689999999999999999988654 114577777777777766 4444342211111 1111111112
Q ss_pred HHHHHHHHHHhhccCCcccCCCCCccccccCCCchhHHHhhhcCCCCcccccccccccCCccccccCcceEEeccHHHHH
Q 003434 497 CLQYYVTKAKSGCGSRNTYVPTMPALTRCTTGSKFQGVWKKKEKSPNSQKKNSQVATMNGEISFRVPQLCIRINSFHRIK 576 (820)
Q Consensus 497 ~l~~Y~~~v~~~~~~k~~~~p~~P~lTr~~~~~~~~~~~Kkk~~~~~~~e~~~~~~~~~~~~s~~~~~lCVrLNnLe~i~ 576 (820)
.+..|-..+. + |.+ +.|. . .|.. . .-+.|..||++.++.
T Consensus 435 L~d~Y~~~L~-~--------~s~--lgr~---~-----tke~------------------~----~~~g~~~L~~L~~V~ 473 (706)
T 3fhn_A 435 LTSSYLDYIL-T--------VDS--LNET---R-----TKEQ------------------E----LYQTMAKLQHVNFVY 473 (706)
T ss_dssp HHHHHHHHHH-T--------CCC--SCSE---E-----EHHH------------------H----HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHh-C--------ccc--cccc---c-----chHH------------------H----HHHHHHHHHHHHHHH
Confidence 2233333331 0 000 1110 0 0000 0 022377888888888
Q ss_pred HHHHHHHHHHHh--hhccccccccccccccccccccccHHHHHHHHHH-HHHHHhhhHhhcccchh----h----hcccc
Q 003434 577 SELDVLEKRVIT--HLRNCESAHAEDFSNGLGKKFELTPAACVEGVQQ-LSEAVAYKIVFHDLSHV----L----WDGLY 645 (820)
Q Consensus 577 ~~L~~Lek~i~~--~~~~~~s~~~~~~~~~l~~~F~~s~~~~~~~i~~-l~e~~a~klvf~Dl~~~----~----~~~Ly 645 (820)
..|..--+.+-. =|..... .....-.+.|+.+.....+-..+ +.+.+...++ ..++.. + |...-
T Consensus 474 ~~L~dWsddvfFLeLw~~l~~----~t~s~~gSIFDetIs~Y~~L~~~~~~~~Iv~~v~-~eik~~lK~Y~k~s~W~s~~ 548 (706)
T 3fhn_A 474 RKIKSLSSNFIFIQLTDIVNS----TESKKYNSLFQNVENDYEKAMSTDMQNSIVHRIQ-KLLKETLRNYFKISTWSTLE 548 (706)
T ss_dssp HHHHHHTTSHHHHHHHHHHHH----HTTCCCSCTTHHHHHHHHHHHHTHHHHHHHHHHH-HHHHHHTHHHHHCCGGGTCC
T ss_pred HHHHHhcCCchhHHHHHHHhc----ccCcccCccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcccCcccC
Confidence 544333221100 1111100 00113468999998888777777 6665554433 233322 1 22221
Q ss_pred cCC-------C-CccchHHHHHHHHHHHHHHHHh-hHHHHHhHHHHHHHHHHHHHHHHHHhcCC-CCCCCChhhHHHHHH
Q 003434 646 VGE-------P-SSSRIEPLLQELERNLLIISDT-VHERVRTRIITDIMKASFDGFLLVLLAGG-PSRAFTRQDSQIIED 715 (820)
Q Consensus 646 ~~~-------v-~~~rI~PlL~~Ld~~L~~l~~~-l~~~~~~rvl~~l~ka~~e~~l~VLL~gG-psR~fs~~d~~~le~ 715 (820)
.++ . .++-+.|.+..|...|..|... +....+.++ |+.+.+.+...+...= -...|+..-..-+..
T Consensus 549 ~~~~~~~~~~lspSaEL~~~L~~L~~~L~~L~~~lL~~~~f~~I----wR~ia~~Ld~yL~e~IL~~nkFS~~Ga~Qf~~ 624 (706)
T 3fhn_A 549 MSVDENIGPSSVPSAELVNSINVLRRLINKLDSMDIPLAISLKV----KNELLNVIVNYFTESILKLNKFNQNGLNQFLH 624 (706)
T ss_dssp CC------CCCCCCGGGHHHHHHHHHHHHHHHTSCCCHHHHHHH----HHHHHHHHHHHHHHTTTTTSCBCHHHHHHHHH
T ss_pred CCCcccccccCCCCHHHHHHHHHHHHHHHHHHHccCCHHHHHHH----HHHHHHHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 111 1 2556899999999999999998 688887777 5555554333332210 034699999999999
Q ss_pred HHHHHHHHhhhCCCCC
Q 003434 716 DFKSLKDLFWANGDGL 731 (820)
Q Consensus 716 dL~~Lk~fF~A~GeGL 731 (820)
|++.|...|. -++|-
T Consensus 625 D~~~L~~v~~-lp~~~ 639 (706)
T 3fhn_A 625 DFKSLSSILS-LPSHA 639 (706)
T ss_dssp HHHHHHTTSC-CCTTC
T ss_pred HHHHHHHHhc-CCCcc
Confidence 9999999888 44443
No 6
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=26.76 E-value=41 Score=29.72 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=20.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhCCC
Q 003434 30 DQQEYDAWQKRTLKLLEAGLLLHPR 54 (820)
Q Consensus 30 ~~~~y~~Wq~rql~~le~gl~~~p~ 54 (820)
+..+|+.|.+.+++|||+..+-|-+
T Consensus 67 ~a~e~vp~L~~~i~vle~~~~~~~~ 91 (94)
T 3fx7_A 67 AAQEQIAWLKERIRVLEEDYLEHHH 91 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hhHHHhHHHHHHHHHhHHHHHHhcc
Confidence 5689999999999999999987753
No 7
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=22.07 E-value=48 Score=30.86 Aligned_cols=44 Identities=16% Similarity=0.471 Sum_probs=33.7
Q ss_pred CHHH-HHHHHHHhhccCCCccchHhHHHHHHHHHhhhhcCCCchHHH
Q 003434 119 NLRL-YEMLLEACFDSSYETSIIEEVDELMEQIKKTWVILGMNQMLH 164 (820)
Q Consensus 119 n~rl-Y~~LL~~~fD~~de~~l~~e~dElLe~lk~tW~~LgI~~~~h 164 (820)
|... |..+...+=.+..+...++|+..+|+.|+-+|.. |.+..|
T Consensus 81 nL~~LY~y~~~~LAn~~~d~~~l~ev~~ll~~lreaW~~--i~~~~~ 125 (130)
T 1orj_A 81 NLDTIYTIILNTLVKVDKTKEELQKILEILKDLREAWEE--VKKKVH 125 (130)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH--HHHhhc
Confidence 4444 9988888855566678999999999999999993 444443
No 8
>1m9i_A Annexin VI; calcium-binding, membrane-binding, phosphorylation, mutant T356D, lipid binding protein; 2.65A {Homo sapiens} SCOP: a.65.1.1 a.65.1.1 PDB: 1avc_A
Probab=21.36 E-value=7.3e+02 Score=29.12 Aligned_cols=151 Identities=13% Similarity=0.158 Sum_probs=76.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHHHHhhhccchhhhccCccccccHHHHHH
Q 003434 276 PRSRVETYIRSSLRTAFAQRMEKADSSRRASKNQPNPLPVLAILAKDVGELAIKERRVFSPILKRWHPLAAGVAVATLHA 355 (820)
Q Consensus 276 ~~~~v~~yI~~s~~~af~~~l~~~~~~~~~~~~~~~~~~~l~~La~~i~~la~~e~~~ysPiL~~~~p~a~~Vaa~~Lh~ 355 (820)
++..+.+.|++-.+--|++.|-........ ...+|.+-.++++-.+-.....-...+.|-+....+....-.|..|+.
T Consensus 296 yg~sL~~~I~~dtsGdY~~~LlaL~~~~~~--~~g~~~~~~a~~~~~~~~~~~~~~~~~~~ti~~~~~f~~~~Da~~L~k 373 (672)
T 1m9i_A 296 YEKSLYSMIKNDTSGEYKKTLLKLSGGDDD--AAGQFFPEAAQVAYQMWELSAVARVELKGDVRPANDFNPDADAKALRK 373 (672)
T ss_dssp SSSCHHHHHHTTCCHHHHHHHHHHHCSCTT--SSCCCCHHHHHHHHHHHHHHHHCCCCCCCSCCCCTTCCHHHHHHHHHH
T ss_pred hCCcHHHHHHHhcCCcHHHHHHHHhCCccc--cccccCCccccccccccccccccccCCCCCcCCCCCCChHHHHHHHHH
Confidence 335577788888888898888765543321 023677777666644333211111223333322211111222444444
Q ss_pred HH---HhHHHHHHHHhhhhcHHHHHHhhhhhHHHHHHHHHhhhcccCCCCCcccccccCCCccchhhhHHHHHHHHHHHH
Q 003434 356 CY---GNEIKQFISSIVELTPDAVQVLRAADKLEKDLVQIAVEDSVDSDDGGKAIIREMPPYEAEGAIANLVKMWLKTRI 432 (820)
Q Consensus 356 ly---g~~Lk~~l~~~~~lt~~~~~vl~aad~Lek~L~~i~~e~~~~~~d~~~~~~~~l~P~~ie~~f~~~V~~Wl~~~~ 432 (820)
.+ |.|=+..++=..+.++...+.+..+-+ .++ |+.++..+. -++.+.|+.+|..|+....
T Consensus 374 A~kG~GtDE~~iI~IL~~rs~~QR~~I~~~Y~------~~~----------gkdL~~~Lk-selsG~fe~~i~~l~~~p~ 436 (672)
T 1m9i_A 374 AMKGLGTDEDTIIDIITHRSNVQRQQIRQTFK------SHF----------GRDLMTDLK-SEISGDLARLILGLMMPPA 436 (672)
T ss_dssp HHSSSSCCHHHHHHHHHTSCHHHHHHHHHHHH------HHH----------SSCHHHHHH-HHCCTHHHHHHHHHHSCHH
T ss_pred HhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHH------HHh----------CchHHHHHH-HHcCCCHHHHHHHHCCCHH
Confidence 43 333333333333333333322222211 111 111221111 1345789999999999999
Q ss_pred HHHHHHHHhhhcc
Q 003434 433 DRLKEWVDRNLQQ 445 (820)
Q Consensus 433 ~k~~ewV~rAie~ 445 (820)
+.-..+++.|++.
T Consensus 437 ~~DA~~l~~A~kg 449 (672)
T 1m9i_A 437 HYDAKQLKKAMEG 449 (672)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999985
No 9
>1zw0_A Type III secretion protein; chaperone, translocation, export; 1.80A {Yersinia pestis} PDB: 2p58_A
Probab=16.76 E-value=96 Score=25.49 Aligned_cols=20 Identities=35% Similarity=0.778 Sum_probs=17.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhh
Q 003434 30 DQQEYDAWQKRTLKLLEAGLL 50 (820)
Q Consensus 30 ~~~~y~~Wq~rql~~le~gl~ 50 (820)
++++|..||+ |-+-+|+||-
T Consensus 37 ~pqqYQ~~q~-q~~A~eaal~ 56 (66)
T 1zw0_A 37 DAKQYQVWQR-ESKALESAIA 56 (66)
T ss_dssp CHHHHHHHHH-HHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHHHHHHHH
Confidence 5799999985 8999999985
No 10
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=15.18 E-value=1.2e+03 Score=25.81 Aligned_cols=90 Identities=13% Similarity=0.040 Sum_probs=52.7
Q ss_pred CCCCCCHHHHHHHHHHhhc--cCCC---ccchHhHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHhhcCCCChhhHH
Q 003434 114 DGFPFNLRLYEMLLEACFD--SSYE---TSIIEEVDELMEQIKKTWVILGMNQMLHNMCFTWVLFHRFVATGQADTDLLY 188 (820)
Q Consensus 114 dg~pln~rlY~~LL~~~fD--~~de---~~l~~e~dElLe~lk~tW~~LgI~~~~h~vcf~wVlf~qfv~t~e~e~~lL~ 188 (820)
.|.+||+..|-.||.+|-. ..++ .--.+++.++++.++.. |+.+... . --.+.+-|+..|. ++
T Consensus 55 ~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~----G~~Pd~~--t-yn~lI~~~~~~g~-----~~ 122 (501)
T 4g26_A 55 NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD----KVVPNEA--T-FTNGARLAVAKDD-----PE 122 (501)
T ss_dssp HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT----TCCCCHH--H-HHHHHHHHHHHTC-----HH
T ss_pred cCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh----CCCCCHH--H-HHHHHHHHHhcCC-----HH
Confidence 4788999999999999832 2222 12357788888888754 5644211 1 1235566776776 45
Q ss_pred HHHHHHHHHHhhhhcCCCchhHHhHHH
Q 003434 189 AADNQLAEVAKDAKATKDPEYAKILSS 215 (820)
Q Consensus 189 ~a~~~l~ev~~d~k~~~~~~~~~~l~s 215 (820)
.|..++++.....-.+....|..++.+
T Consensus 123 ~A~~l~~~M~~~g~~Pd~~tyn~lI~~ 149 (501)
T 4g26_A 123 MAFDMVKQMKAFGIQPRLRSYGPALFG 149 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCccceehHHHHH
Confidence 666676665432222333445544433
Done!