BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003435
(820 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 19/152 (12%)
Query: 298 FPCQEFQC--LRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTL 355
FP Q F+ L+ + +G+ +LPD+ L L L+ +R +P SI+ L L+ L
Sbjct: 96 FPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLREL 155
Query: 356 DLSNCYNLEELPKGICQ---------LTNLRTLDISSCYSLTHMPLGIGKLRPLRKL--- 403
+ C L ELP+ + L NL++L + + +P I L+ L+ L
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRL-EWTGIRSLPASIANLQNLKSLKIR 214
Query: 404 --PAFILGKQRFCAGLGELKLLDLRGRLEIKN 433
P LG L +L+ LDLRG ++N
Sbjct: 215 NSPLSALGP--AIHHLPKLEELDLRGCTALRN 244
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%)
Query: 306 LRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSNCYNLEE 365
L+ L L +GI LP SI L++L+ L + ++ + + +I L L+ LDL C L
Sbjct: 185 LQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN 244
Query: 366 LPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKL 403
P L+ L + C +L +PL I +L L KL
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 628 LVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLR 687
L S++ +L SL + N P L+ L +L L +L + C L + + L+
Sbjct: 198 LPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256
Query: 688 HLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQ 730
L + C L +LP+ + + L+KLD+ C L +P ++ Q
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 308 VLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSNCYNLEELP 367
L+L + + PD L HL++ + + ++P + + L+TL L+ L LP
Sbjct: 85 ALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALP 143
Query: 368 KGICQLTNLRTLDISSCYSLTHMP 391
I L LR L I +C LT +P
Sbjct: 144 ASIASLNRLRELSIRACPELTELP 167
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 18/139 (12%)
Query: 638 LSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKL 697
L S+ + FP D+ L+ L T++ L L Q F+ L L++ + L
Sbjct: 88 LRSVPLPQFP------DQAFRLSHLQHXTIDAA-GLXELPDTXQQFAGLETLTLAR-NPL 139
Query: 698 ESLPMSLEKFCSLQKLDIVECPRLVHIP------DIMGQHSSLLELS---IEGCPMLKLS 748
+LP S+ L++L I CP L +P D G+H L+ L +E + L
Sbjct: 140 RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP 199
Query: 749 LKSIEFLGQLQRLVIKKCP 767
SI L L+ L I+ P
Sbjct: 200 -ASIANLQNLKSLKIRNSP 217
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 21/110 (19%)
Query: 15 LIVLDDVWDEDGENMEKALSWLNVGGSGSC-VLVTTRSGRVA-SMMG---TVPTQHLTCL 69
L++LDDVWD SW+ C +L+TTR V S+MG VP + + L
Sbjct: 239 LLILDDVWD----------SWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVE--SSL 286
Query: 70 SSEDSWVLFKHFAFGSVEDESTELEEIGQKIVAKCKGLPIAIKTIGSILR 119
E + F V + +L E I+ +CKG P+ + IG++LR
Sbjct: 287 GKEKGLEILSLF----VNMKKADLPEQAHSIIKECKGSPLVVSLIGALLR 332
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 21/110 (19%)
Query: 15 LIVLDDVWDEDGENMEKALSWLNVGGSGSC-VLVTTRSGRVA-SMMG---TVPTQHLTCL 69
L++LDDVWD SW+ C +L+TTR V S+MG VP + + L
Sbjct: 245 LLILDDVWD----------SWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVE--SSL 292
Query: 70 SSEDSWVLFKHFAFGSVEDESTELEEIGQKIVAKCKGLPIAIKTIGSILR 119
E + F V + +L E I+ +CKG P+ + IG++LR
Sbjct: 293 GKEKGLEILSLF----VNMKKADLPEQAHSIIKECKGSPLVVSLIGALLR 338
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 14/127 (11%)
Query: 262 DIRHCTLVGDLSSSTIPRARKLRTLLFLTVKMENL-SFPCQEFQ---CLRVLDLGQSGII 317
++R+ L G+ I ++L L +L + L S P F L+ L L ++ +
Sbjct: 64 NVRYLALGGN-KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122
Query: 318 KLPDSI-GTLKHLRYLDLSHTYIRKIP-GSISKLKHLQTLDLSNCYN-LEELPKGI---- 370
LPD + L +L YL+L+H ++ +P G KL +L LDLS YN L+ LP+G+
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS--YNQLQSLPEGVFDKL 180
Query: 371 CQLTNLR 377
QL +LR
Sbjct: 181 TQLKDLR 187
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 21/110 (19%)
Query: 15 LIVLDDVWDEDGENMEKALSWLNVGGSGSC-VLVTTRSGRVA-SMMG---TVPTQHLTCL 69
L++LDDVWD W+ C +L+TTR V S+MG VP + + L
Sbjct: 239 LLILDDVWD----------PWVLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVE--SGL 286
Query: 70 SSEDSWVLFKHFAFGSVEDESTELEEIGQKIVAKCKGLPIAIKTIGSILR 119
E + F ED E I+ +CKG P+ + IG++LR
Sbjct: 287 GREKGLEILSLFVNMKKEDLPAE----AHSIIKECKGSPLVVSLIGALLR 332
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 319 LPDSIGTLKHLRYLDLSHTYIR-KIPGSISKLKHLQTLDLSNCYNLEELPKGICQLTNLR 377
+P IG++ +L L+L H I IP + L+ L LDLS+ +P+ + LT L
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 378 TLDISS 383
+D+S+
Sbjct: 708 EIDLSN 713
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 54/126 (42%), Gaps = 27/126 (21%)
Query: 300 CQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIR-KIPGSISKLKHLQTL--- 355
C E L + SG I P S+G+L LR L L + +IP + +K L+TL
Sbjct: 417 CSELVSLHLSFNYLSGTI--PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
Query: 356 ----------DLSNCYNLE-----------ELPKGICQLTNLRTLDISSCYSLTHMPLGI 394
LSNC NL E+PK I +L NL L +S+ ++P +
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
Query: 395 GKLRPL 400
G R L
Sbjct: 535 GDCRSL 540
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 72/188 (38%), Gaps = 44/188 (23%)
Query: 262 DIRHCTLVGDLSSSTIPRARKLRTLLFLTVKMENLSFPCQ-----EFQCLRVLDLGQSGI 316
D+ +L G ++ T+ L FL V L FP + + L VLDL + I
Sbjct: 106 DLSRNSLSGPVT--TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163
Query: 317 IK-------LPDSIGTLKHL-------------------RYLDLS-HTYIRKIP--GSIS 347
L D G LKHL +LD+S + + IP G S
Sbjct: 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCS 223
Query: 348 KLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFI 407
L+HL D+S + + I T L+ L+ISS + +P PL+ L
Sbjct: 224 ALQHL---DISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP-----PLPLKSLQYLS 275
Query: 408 LGKQRFCA 415
L + +F
Sbjct: 276 LAENKFTG 283
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 319 LPDSIGTLKHLRYLDLSHTYIR-KIPGSISKLKHLQTLDLSNCYNLEELPKGICQLTNLR 377
+P IG++ +L L+L H I IP + L+ L LDLS+ +P+ + LT L
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704
Query: 378 TLDISS 383
+D+S+
Sbjct: 705 EIDLSN 710
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 54/126 (42%), Gaps = 27/126 (21%)
Query: 300 CQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIR-KIPGSISKLKHLQTL--- 355
C E L + SG I P S+G+L LR L L + +IP + +K L+TL
Sbjct: 414 CSELVSLHLSFNYLSGTI--PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 471
Query: 356 ----------DLSNCYNLE-----------ELPKGICQLTNLRTLDISSCYSLTHMPLGI 394
LSNC NL E+PK I +L NL L +S+ ++P +
Sbjct: 472 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 531
Query: 395 GKLRPL 400
G R L
Sbjct: 532 GDCRSL 537
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 72/188 (38%), Gaps = 44/188 (23%)
Query: 262 DIRHCTLVGDLSSSTIPRARKLRTLLFLTVKMENLSFPCQ-----EFQCLRVLDLGQSGI 316
D+ +L G ++ T+ L FL V L FP + + L VLDL + I
Sbjct: 103 DLSRNSLSGPVT--TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 160
Query: 317 IK-------LPDSIGTLKHL-------------------RYLDLS-HTYIRKIP--GSIS 347
L D G LKHL +LD+S + + IP G S
Sbjct: 161 SGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCS 220
Query: 348 KLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFI 407
L+HL D+S + + I T L+ L+ISS + +P PL+ L
Sbjct: 221 ALQHL---DISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP-----PLPLKSLQYLS 272
Query: 408 LGKQRFCA 415
L + +F
Sbjct: 273 LAENKFTG 280
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 332 LDLSHTYIRKIPGSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISSCYSLTHMP 391
LDLS+ I I +I K L L L N +L ELP I L+NLR LD+S LT +P
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYL-NGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLP 286
Query: 392 LGIG 395
+G
Sbjct: 287 AELG 290
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 295 NLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIP---GSISKLKH 351
N+S ++ L L L + + +LP I L +LR LDLSH + +P GS +LK+
Sbjct: 238 NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297
Query: 352 LQTLD 356
D
Sbjct: 298 FYFFD 302
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 319 LPDSIGTLKHLRYLDLSHTYIR-KIPGSISKLKHLQTLDLSNCYNLEELPKGICQLTNL 376
+P +I L L YL ++HT + IP +S++K L TLD S LP I L NL
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 21/110 (19%)
Query: 15 LIVLDDVWDEDGENMEKALSWLNVGGSGSC-VLVTTRSGRVA-SMMG---TVPTQHLTCL 69
L++LDDVWD W+ C +L+TT V S+MG VP + + L
Sbjct: 246 LLILDDVWD----------PWVLKAFDNQCQILLTTSDKSVTDSVMGPKHVVPVE--SGL 293
Query: 70 SSEDSWVLFKHFAFGSVEDESTELEEIGQKIVAKCKGLPIAIKTIGSILR 119
E + F ED E I+ +CKG P+ + IG++LR
Sbjct: 294 GREKGLEILSLFVNMKKEDLPAE----AHSIIKECKGSPLVVSLIGALLR 339
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 22/156 (14%)
Query: 307 RVLDLGQSGI-IKLPDSIGTLKHLRYLDLSHTYIRKIP-GSISKLKHLQTLDLSNCYNLE 364
R L+L ++ I + D+ L+HL L LS +RKI G+ + L L TL+L + L
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFD-NRLT 96
Query: 365 ELP-KGICQLTNLRTLDISS-------CYSLTHMP----LGIGKLRPLRKLPAFILGKQR 412
+P + L+ LR L + + Y+ +P L +G+L+ L +
Sbjct: 97 TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAF---- 152
Query: 413 FCAGLGELKLLDLRGRLEIKNLENLKNVVDAEEAKL 448
GL L+ L+L G +K++ NL +V EE +L
Sbjct: 153 --EGLVNLRYLNL-GMCNLKDIPNLTALVRLEELEL 185
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 22/156 (14%)
Query: 307 RVLDLGQSGI-IKLPDSIGTLKHLRYLDLSHTYIRKIP-GSISKLKHLQTLDLSNCYNLE 364
R L+L ++ I + D+ L+HL L LS +RKI G+ + L L TL+L + L
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFD-NRLT 96
Query: 365 ELP-KGICQLTNLRTLDISS-------CYSLTHMP----LGIGKLRPLRKLPAFILGKQR 412
+P + L+ LR L + + Y+ +P L +G+L+ L + +
Sbjct: 97 TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYI------SEA 150
Query: 413 FCAGLGELKLLDLRGRLEIKNLENLKNVVDAEEAKL 448
GL L+ L+L G +K++ NL +V EE +L
Sbjct: 151 AFEGLVNLRYLNL-GMCNLKDIPNLTALVRLEELEL 185
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 306 LRVLDLGQSGIIKLPDSI-GTLKHLRYLDLSHTYIRKIPGSI-SKLKHLQTLDLSNCYNL 363
L+ L LG + + LP + +L L LDL + +P ++ +L HL+ L + C L
Sbjct: 66 LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC-CNKL 124
Query: 364 EELPKGICQLTNLR--TLDISSCYSLTH 389
ELP+GI +LT+L LD + S+ H
Sbjct: 125 TELPRGIERLTHLTHLALDQNQLKSIPH 152
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 30/107 (28%)
Query: 325 TLKHLRYLDLSHTYIRK--------------------------IPGSISKLKHLQTLDLS 358
+L++L YLD+SHT+ R +P ++L++L LDLS
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 359 NCYNLEEL-PKGICQLTNLRTLDISSCYSLTHMPLGI-GKLRPLRKL 403
C LE+L P L++L+ L+++S L +P GI +L L+K+
Sbjct: 479 QC-QLEQLSPTAFNSLSSLQVLNMAS-NQLKSVPDGIFDRLTSLQKI 523
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 33/154 (21%)
Query: 283 LRTLLFLTVKMENLSFP--CQE----FQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSH 336
L +L FL + LSF C + L+ LDL +G+I + + L+ L +LD H
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 405
Query: 337 TYIRKIP--------------------------GSISKLKHLQTLDLS-NCYNLEELPKG 369
+ ++++ G + L L+ L ++ N + LP
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
Query: 370 ICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKL 403
+L NL LD+S C P L L+ L
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 323 IGTLKHLRYLDLSHTYIR--KIPGSISKLKHLQTLDLSN 359
IG LK L+ L+++H I+ K+P S L +L+ LDLS+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 31/185 (16%)
Query: 307 RVLDL--GQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIP-GSISKLKHLQTLDLSNCYNL 363
R+L+L Q IIK+ +S L+HL L LS +IR I G+ + L +L TL+L + L
Sbjct: 67 RLLNLHENQIQIIKV-NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD-NRL 124
Query: 364 EELPKG-ICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGK----QRFCAGLG 418
+P G L+ L+ L + + P+ +P++ + +R LG
Sbjct: 125 TTIPNGAFVYLSKLKELWLRN--------------NPIESIPSYAFNRIPSLRRL--DLG 168
Query: 419 ELKLLDLRGRLEIKNLENLKNVVDA-----EEAKLHDKVHIRSLGLSWSRNAQMRDDKAQ 473
ELK L + L NL+ + A E L + + L LS + + +R Q
Sbjct: 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQ 228
Query: 474 ALIEF 478
L+
Sbjct: 229 GLMHL 233
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 275 STIPRA-----RKLRTLLFLTVKMENL-SFPCQEFQCLRVLDLGQSGIIKL--PDSIGTL 326
+TIP KL+ L +E++ S+ LR LDLG+ + + L
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184
Query: 327 KHLRYLDLSHTYIRKIPGSISKLKHLQTLDLS 358
+LRYL+L+ +R+IP +++ L L LDLS
Sbjct: 185 SNLRYLNLAMCNLREIP-NLTPLIKLDELDLS 215
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 46/184 (25%)
Query: 627 KLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSL 686
KLV S ++F +L + NFP L LS K GN L +L +NLE+L S +
Sbjct: 305 KLVLSANKFENLCQISASNFPSLTHLSIK-GNTKRL-ELGTGCLENLENLRELDLSHDDI 362
Query: 687 R-----HLSILHCDKLESLPMSLEKFCSLQKLDIVECPRL-------------------- 721
+L + + L+SL +S + SL+ ECP+L
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422
Query: 722 -VHIPDIMGQHSSLLELSIE----GCPMLK-LSLK-------------SIEFLGQLQRLV 762
+H+ ++ SLL++S E G P L+ L+L+ S++ LG+L+ LV
Sbjct: 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482
Query: 763 IKKC 766
+ C
Sbjct: 483 LSFC 486
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 33/154 (21%)
Query: 283 LRTLLFLTVKMENLSFP--CQEFQ----CLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSH 336
L +L FL + LSF C + L+ LDL +G+I + + L+ L +LD H
Sbjct: 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 429
Query: 337 TYIRKIP--------------------------GSISKLKHLQTLDLS-NCYNLEELPKG 369
+ ++++ G + L L+ L ++ N + LP
Sbjct: 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 489
Query: 370 ICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKL 403
+L NL LD+S C P L L+ L
Sbjct: 490 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 323 IGTLKHLRYLDLSHTYIR--KIPGSISKLKHLQTLDLS 358
IG LK L+ L+++H I+ K+P S L +L+ LDLS
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 27/125 (21%)
Query: 306 LRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIP---------------------- 343
L+ LDL +G+I + + L+ L +LD H+ ++++
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434
Query: 344 ----GSISKLKHLQTLDLS-NCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLR 398
G + L L+ L ++ N + LP +L NL LD+S C P L
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494
Query: 399 PLRKL 403
L+ L
Sbjct: 495 SLQVL 499
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 323 IGTLKHLRYLDLSHTYIR--KIPGSISKLKHLQTLDLS 358
IG LK L+ L+++H I+ K+P S L +L+ LDLS
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 96/248 (38%), Gaps = 48/248 (19%)
Query: 306 LRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPG---SISKLKHLQTLDLS---- 358
+R LDLG + KL ++L+ LDLSH+ I + L+HLQ L+LS
Sbjct: 335 MRKLDLGTRCLEKL-------ENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEP 387
Query: 359 ---------NCYNLEELPKGICQLTN------------LRTLDISSC---YSLTHMPLGI 394
C LE L L LR L++S C S H+ G+
Sbjct: 388 LGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGL 447
Query: 395 GKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLKNVVDAEEAKLHDKVHI 454
LR L + G + + LL + G LEI L + N++ ++ H ++
Sbjct: 448 QDLRHLN-----LQGNSFQDGSISKTNLLQMVGSLEILILSSC-NLLSIDQQAFHGLRNV 501
Query: 455 RSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSL 514
L LS + + D AL N+ +++ + P+ + NL L
Sbjct: 502 NHLDLSHN---SLTGDSMDALSHLKGLYLNMASNNIRIIPPHLLPALSQQSIINLSHNPL 558
Query: 515 VDCTCQEL 522
DCTC +
Sbjct: 559 -DCTCSNI 565
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 27/125 (21%)
Query: 306 LRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIP---------------------- 343
L+ LDL +G+I + + L+ L +LD H+ ++++
Sbjct: 80 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139
Query: 344 ----GSISKLKHLQTLDLS-NCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLR 398
G + L L+ L ++ N + LP +L NL LD+S C P L
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199
Query: 399 PLRKL 403
L+ L
Sbjct: 200 SLQVL 204
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 269 VGDLSSSTIPRARKLRTLLFLTVKMENL-SFPCQEFQCLRVLDLGQSGI--IKLPDSIGT 325
+ S + L L+ + K+ +L SFP + L+ L++ + I KLP
Sbjct: 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151
Query: 326 LKHLRYLDLSHTYIRKI 342
L +L ++DLS+ YI+ I
Sbjct: 152 LTNLVHVDLSYNYIQTI 168
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 306 LRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIP--GSISKLKHLQTLDLSNCYNL 363
LR LDL +G I + + L+ L++LD H+ ++++ + L+ L LD+S
Sbjct: 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437
Query: 364 EELPKGICQLTNLRTLDIS 382
+ LT+L TL ++
Sbjct: 438 IDFDGIFLGLTSLNTLKMA 456
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 269 VGDLSSSTIPRARKLRTLLFLTVKMENL-SFPCQEFQCLRVLDLGQSGI--IKLPDSIGT 325
+ S + L L+ + K+ +L SFP + L+ L++ + I KLP
Sbjct: 87 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 146
Query: 326 LKHLRYLDLSHTYIRKI 342
L +L ++DLS+ YI+ I
Sbjct: 147 LTNLVHVDLSYNYIQTI 163
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 306 LRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIP--GSISKLKHLQTLDLSNCYNL 363
LR LDL +G I + + L+ L++LD H+ ++++ + L+ L LD+S
Sbjct: 373 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 432
Query: 364 EELPKGICQLTNLRTLDIS 382
+ LT+L TL ++
Sbjct: 433 IDFDGIFLGLTSLNTLKMA 451
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 302 EFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSNCY 361
E+ +RVL L + L + L + +LDLSH +R +P +++ L+ L+ L S+
Sbjct: 439 EYADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-- 495
Query: 362 NLEELPKGICQLTNLRTL 379
N E G+ L L+ L
Sbjct: 496 NALENVDGVANLPRLQEL 513
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 302 EFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSNCY 361
E+ +RVL L + L + L + +LDLSH +R +P +++ L+ L+ L S+
Sbjct: 439 EYADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-- 495
Query: 362 NLEELPKGICQLTNLRTL 379
N E G+ L L+ L
Sbjct: 496 NALENVDGVANLPRLQEL 513
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 306 LRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSN 359
L LD+ ++ +PDS + +R+L+LS T IR + I + L+ LD+SN
Sbjct: 415 LTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSN 466
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 306 LRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSN 359
L LD+ ++ +PDS + +R+L+LS T IR + I + L+ LD+SN
Sbjct: 389 LTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSN 440
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 322 SIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSN 359
S+ HLR L L++ + K+PG ++ K++Q + L N
Sbjct: 235 SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN 272
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 306 LRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSNCYNLEE 365
+ VL++ Q+ +I LP+ +L+ YLD + +P + LKHL +D + L E
Sbjct: 82 ITVLEITQNALISLPELPASLE---YLDACDNRLSTLPELPASLKHLD-VDNNQLTXLPE 137
Query: 366 LP 367
LP
Sbjct: 138 LP 139
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 322 SIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSN 359
S+ HLR L L++ + K+PG ++ K++Q + L N
Sbjct: 235 SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN 272
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 323 IGTLKHLRYLDLSHTYIR--KIPGSISKLKHLQTLDLSN 359
IG LK L+ L+++H I+ K+P S L +L+ LDLS+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 323 IGTLKHLRYLDLSHTYIR--KIPGSISKLKHLQTLDLSN 359
IG LK L+ L+++H I+ K+P S L +L+ LDLS+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 160
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 323 IGTLKHLRYLDLSHTYIR--KIPGSISKLKHLQTLDLSN 359
IG LK L+ L+++H I+ K+P S L +L+ LDLS+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 159
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 323 IGTLKHLRYLDLSHTYIR--KIPGSISKLKHLQTLDLSN 359
IG LK L+ L+++H I+ K+P S L +L+ LDLS+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 159
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 323 IGTLKHLRYLDLSHTYIR--KIPGSISKLKHLQTLDLSN 359
IG LK L+ L+++H I+ K+P S L +L+ LDLS+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 160
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 14/86 (16%)
Query: 308 VLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSNCYNLEELP 367
VL++G+SG+ LPD + H+ L + + +P +L+ L+ + + +L LP
Sbjct: 44 VLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPALPPELRTLE-VSGNQLTSLPVLP 100
Query: 368 KGICQLTNLRTLDISSCYS--LTHMP 391
G+ +L S +S LTH+P
Sbjct: 101 PGLLEL---------SIFSNPLTHLP 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,980,778
Number of Sequences: 62578
Number of extensions: 1004426
Number of successful extensions: 2450
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 2337
Number of HSP's gapped (non-prelim): 158
length of query: 820
length of database: 14,973,337
effective HSP length: 107
effective length of query: 713
effective length of database: 8,277,491
effective search space: 5901851083
effective search space used: 5901851083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)