Query 003435
Match_columns 820
No_of_seqs 577 out of 3885
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 23:22:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003435.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003435hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 6E-59 1.3E-63 557.5 46.5 591 3-745 287-906 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 7.8E-60 1.7E-64 532.6 26.7 379 3-385 252-653 (889)
3 PLN00113 leucine-rich repeat r 100.0 2.5E-45 5.5E-50 442.5 23.7 501 262-806 70-590 (968)
4 PLN00113 leucine-rich repeat r 100.0 2.9E-43 6.4E-48 424.5 23.2 471 261-767 93-582 (968)
5 KOG4194 Membrane glycoprotein 100.0 2.1E-35 4.5E-40 298.1 5.6 391 284-801 55-454 (873)
6 KOG4194 Membrane glycoprotein 100.0 1.9E-35 4.1E-40 298.4 4.8 363 281-764 78-447 (873)
7 KOG0472 Leucine-rich repeat pr 100.0 3.2E-34 7E-39 277.0 -12.1 259 263-545 47-313 (565)
8 KOG0444 Cytoskeletal regulator 100.0 6.9E-33 1.5E-37 281.7 -6.0 360 280-770 6-376 (1255)
9 KOG0472 Leucine-rich repeat pr 100.0 3.7E-33 8.1E-38 269.7 -13.7 149 616-767 390-539 (565)
10 PF00931 NB-ARC: NB-ARC domain 100.0 1.4E-29 3.1E-34 260.9 4.5 190 2-193 91-285 (287)
11 KOG0618 Serine/threonine phosp 100.0 9.2E-31 2E-35 279.2 -7.6 215 592-817 285-506 (1081)
12 KOG0444 Cytoskeletal regulator 99.9 1.8E-30 4E-35 264.2 -6.3 359 302-800 5-376 (1255)
13 KOG0618 Serine/threonine phosp 99.9 4.2E-30 9.1E-35 274.3 -5.7 456 278-795 42-509 (1081)
14 PLN03210 Resistant to P. syrin 99.9 2.5E-24 5.4E-29 259.3 29.6 416 178-724 469-909 (1153)
15 KOG4237 Extracellular matrix p 99.9 3.8E-23 8.2E-28 200.6 -1.2 408 282-718 68-498 (498)
16 PRK15387 E3 ubiquitin-protein 99.8 1.8E-19 4E-24 200.5 15.3 71 306-385 203-273 (788)
17 KOG4237 Extracellular matrix p 99.8 5E-22 1.1E-26 192.9 -4.8 122 287-410 52-176 (498)
18 PRK15387 E3 ubiquitin-protein 99.8 4.3E-19 9.3E-24 197.5 14.5 92 282-385 202-293 (788)
19 PRK15370 E3 ubiquitin-protein 99.7 3.7E-17 8E-22 183.7 10.4 94 283-385 180-273 (754)
20 PRK15370 E3 ubiquitin-protein 99.7 5.8E-17 1.3E-21 182.2 11.6 80 304-391 178-257 (754)
21 KOG0617 Ras suppressor protein 99.6 2.5E-18 5.4E-23 147.7 -5.0 124 279-403 31-155 (264)
22 KOG0617 Ras suppressor protein 99.6 3.1E-17 6.7E-22 141.0 -4.6 161 262-427 34-199 (264)
23 cd00116 LRR_RI Leucine-rich re 99.5 2E-15 4.2E-20 158.8 -1.2 63 323-385 19-92 (319)
24 cd00116 LRR_RI Leucine-rich re 99.5 5.2E-15 1.1E-19 155.6 1.3 55 331-385 2-62 (319)
25 KOG4658 Apoptotic ATPase [Sign 99.3 2.3E-12 5E-17 147.7 6.7 134 274-409 516-653 (889)
26 PF14580 LRR_9: Leucine-rich r 99.1 6.2E-11 1.3E-15 108.3 4.5 128 277-407 15-149 (175)
27 KOG0532 Leucine-rich repeat (L 99.1 4.2E-12 9.1E-17 130.3 -5.0 127 279-408 73-199 (722)
28 KOG0532 Leucine-rich repeat (L 99.1 8.1E-12 1.8E-16 128.3 -3.6 210 286-539 55-270 (722)
29 COG4886 Leucine-rich repeat (L 99.0 2.9E-10 6.3E-15 122.9 6.0 196 285-545 97-293 (394)
30 PF14580 LRR_9: Leucine-rich r 99.0 2.7E-10 5.8E-15 104.2 4.0 92 290-385 6-99 (175)
31 KOG3207 Beta-tubulin folding c 99.0 5.8E-11 1.3E-15 118.4 -0.8 73 471-543 109-186 (505)
32 KOG3207 Beta-tubulin folding c 99.0 9.6E-11 2.1E-15 116.9 -0.0 112 276-387 141-259 (505)
33 COG4886 Leucine-rich repeat (L 98.9 7.1E-10 1.5E-14 119.9 5.2 182 277-524 112-294 (394)
34 KOG1259 Nischarin, modulator o 98.9 3.7E-10 8E-15 106.8 -0.5 134 277-413 280-414 (490)
35 PLN03150 hypothetical protein; 98.8 6.3E-09 1.4E-13 117.5 7.2 109 638-746 420-529 (623)
36 PLN03150 hypothetical protein; 98.8 7.1E-09 1.5E-13 117.1 7.6 110 661-770 419-529 (623)
37 KOG1909 Ran GTPase-activating 98.8 5.1E-10 1.1E-14 108.7 -2.7 134 633-766 154-308 (382)
38 KOG1909 Ran GTPase-activating 98.8 5.3E-10 1.1E-14 108.7 -2.9 252 448-744 26-310 (382)
39 PF13855 LRR_8: Leucine rich r 98.7 1.2E-08 2.6E-13 76.4 4.3 58 304-361 1-60 (61)
40 KOG1259 Nischarin, modulator o 98.7 1.7E-09 3.7E-14 102.4 -1.1 63 481-544 327-389 (490)
41 KOG0531 Protein phosphatase 1, 98.6 3.4E-09 7.4E-14 114.5 -1.0 102 280-384 71-172 (414)
42 PF13855 LRR_8: Leucine rich r 98.6 3.1E-08 6.7E-13 74.2 4.4 56 710-765 3-58 (61)
43 KOG0531 Protein phosphatase 1, 98.6 8.4E-09 1.8E-13 111.5 -0.2 109 275-386 89-198 (414)
44 KOG4341 F-box protein containi 98.4 1.2E-08 2.6E-13 101.6 -4.6 274 484-770 139-440 (483)
45 KOG2120 SCF ubiquitin ligase, 98.4 7.7E-09 1.7E-13 98.1 -6.8 66 632-697 206-273 (419)
46 KOG2120 SCF ubiquitin ligase, 98.3 6.8E-09 1.5E-13 98.5 -7.8 180 636-820 185-372 (419)
47 KOG4341 F-box protein containi 98.3 1.2E-08 2.6E-13 101.6 -7.6 292 507-816 138-457 (483)
48 PF12799 LRR_4: Leucine Rich r 98.3 5.8E-07 1.3E-11 61.1 2.7 38 305-342 2-39 (44)
49 KOG2982 Uncharacterized conser 98.2 8.4E-07 1.8E-11 84.6 3.9 103 283-385 47-157 (418)
50 KOG1859 Leucine-rich repeat pr 98.1 8.5E-08 1.8E-12 102.0 -5.3 57 327-385 164-220 (1096)
51 PRK15386 type III secretion pr 98.1 1.7E-05 3.6E-10 82.0 10.7 162 593-777 51-221 (426)
52 KOG4579 Leucine-rich repeat (L 98.1 3.7E-07 7.9E-12 76.6 -1.9 89 279-368 51-140 (177)
53 KOG4579 Leucine-rich repeat (L 98.1 4.1E-07 8.8E-12 76.4 -1.8 108 282-391 28-139 (177)
54 PF12799 LRR_4: Leucine Rich r 98.1 4.2E-06 9.2E-11 56.9 3.5 37 327-363 1-37 (44)
55 PRK15386 type III secretion pr 98.1 1.8E-05 3.9E-10 81.8 9.6 133 613-766 51-187 (426)
56 KOG1859 Leucine-rich repeat pr 98.0 3.3E-08 7.1E-13 105.1 -11.0 17 505-521 107-123 (1096)
57 KOG2982 Uncharacterized conser 98.0 2.3E-06 4.9E-11 81.7 1.1 87 451-542 70-159 (418)
58 PRK04841 transcriptional regul 97.7 0.00099 2.1E-08 81.0 17.7 203 11-244 120-332 (903)
59 COG5238 RNA1 Ran GTPase-activa 97.6 2.9E-05 6.2E-10 73.4 2.7 86 300-385 26-131 (388)
60 KOG3665 ZYG-1-like serine/thre 97.5 2.8E-05 6E-10 87.8 1.0 128 261-389 122-265 (699)
61 KOG1644 U2-associated snRNP A' 97.4 0.00024 5.2E-09 64.6 5.1 102 282-384 43-150 (233)
62 KOG3665 ZYG-1-like serine/thre 97.3 4.2E-05 9E-10 86.4 -0.3 128 636-765 122-259 (699)
63 KOG1644 U2-associated snRNP A' 97.3 0.0003 6.4E-09 64.0 5.0 100 619-718 47-150 (233)
64 COG5238 RNA1 Ran GTPase-activa 97.2 0.00016 3.5E-09 68.5 1.8 90 322-412 25-134 (388)
65 PF13306 LRR_5: Leucine rich r 97.2 0.0017 3.7E-08 57.4 8.3 122 631-758 7-128 (129)
66 PF13306 LRR_5: Leucine rich r 97.1 0.0011 2.4E-08 58.7 6.7 122 273-400 4-128 (129)
67 KOG2739 Leucine-rich acidic nu 97.1 0.00023 5E-09 67.7 1.8 102 280-382 42-151 (260)
68 KOG2123 Uncharacterized conser 97.1 3.4E-05 7.4E-10 73.2 -3.8 99 303-404 18-123 (388)
69 KOG2123 Uncharacterized conser 97.0 5.1E-05 1.1E-09 72.0 -3.8 100 279-380 17-123 (388)
70 KOG2739 Leucine-rich acidic nu 96.9 0.00035 7.6E-09 66.5 1.5 103 659-764 42-151 (260)
71 TIGR03015 pepcterm_ATPase puta 96.7 0.018 4E-07 58.4 12.4 108 10-118 121-242 (269)
72 PF00560 LRR_1: Leucine Rich R 96.7 0.00082 1.8E-08 37.8 1.0 20 329-348 2-21 (22)
73 KOG1947 Leucine rich repeat pr 96.6 0.00019 4E-09 80.4 -3.2 59 635-693 268-330 (482)
74 PRK06893 DNA replication initi 96.2 0.026 5.6E-07 55.4 9.1 102 14-118 93-207 (229)
75 PF00560 LRR_1: Leucine Rich R 96.0 0.0027 5.8E-08 35.7 0.8 22 305-326 1-22 (22)
76 PRK00411 cdc6 cell division co 96.0 0.66 1.4E-05 50.1 20.0 222 3-241 127-382 (394)
77 KOG0473 Leucine-rich repeat pr 96.0 0.00024 5.1E-09 65.8 -5.8 87 276-362 37-123 (326)
78 PRK00080 ruvB Holliday junctio 95.8 0.11 2.4E-06 54.3 12.7 155 42-221 151-312 (328)
79 PF05729 NACHT: NACHT domain 95.8 0.027 5.9E-07 52.2 7.1 72 10-81 79-162 (166)
80 PF01637 Arch_ATPase: Archaeal 95.6 0.053 1.2E-06 53.6 8.9 101 11-113 117-233 (234)
81 TIGR00635 ruvB Holliday juncti 95.4 0.2 4.3E-06 52.0 12.6 155 42-221 130-291 (305)
82 KOG0473 Leucine-rich repeat pr 95.3 0.00096 2.1E-08 61.9 -4.5 93 294-387 31-124 (326)
83 PF13504 LRR_7: Leucine rich r 95.2 0.011 2.3E-07 30.7 1.2 16 328-343 2-17 (17)
84 KOG1947 Leucine rich repeat pr 95.1 0.0062 1.3E-07 68.1 0.1 130 634-763 186-328 (482)
85 KOG3864 Uncharacterized conser 94.9 0.0071 1.5E-07 55.4 0.1 81 734-818 103-183 (221)
86 COG3903 Predicted ATPase [Gene 94.5 0.025 5.5E-07 58.0 2.7 167 3-173 79-255 (414)
87 COG2909 MalT ATP-dependent tra 94.3 0.49 1.1E-05 53.5 12.1 201 11-244 128-338 (894)
88 PF13173 AAA_14: AAA domain 93.7 0.17 3.6E-06 44.4 6.1 67 5-73 54-126 (128)
89 PRK07471 DNA polymerase III su 93.5 0.56 1.2E-05 49.4 10.6 98 11-115 140-239 (365)
90 PF13504 LRR_7: Leucine rich r 93.4 0.038 8.1E-07 28.7 0.8 16 305-320 2-17 (17)
91 TIGR03420 DnaA_homol_Hda DnaA 92.3 1 2.2E-05 44.2 10.1 101 14-117 92-204 (226)
92 PRK09087 hypothetical protein; 92.0 1.7 3.6E-05 42.5 10.9 97 14-115 89-196 (226)
93 smart00370 LRR Leucine-rich re 91.7 0.12 2.5E-06 30.4 1.6 19 326-344 1-19 (26)
94 smart00369 LRR_TYP Leucine-ric 91.7 0.12 2.5E-06 30.4 1.6 19 326-344 1-19 (26)
95 TIGR00678 holB DNA polymerase 90.3 1.3 2.8E-05 41.9 8.2 91 10-109 94-186 (188)
96 TIGR02928 orc1/cdc6 family rep 90.2 28 0.00061 37.0 20.2 202 4-219 119-350 (365)
97 KOG3864 Uncharacterized conser 89.2 0.054 1.2E-06 49.8 -2.1 40 731-770 150-190 (221)
98 KOG0989 Replication factor C, 89.0 2.4 5.2E-05 42.1 8.7 97 14-113 131-230 (346)
99 PRK08727 hypothetical protein; 88.9 2.9 6.3E-05 41.1 9.7 96 13-111 94-201 (233)
100 PRK06645 DNA polymerase III su 88.1 3 6.4E-05 46.0 9.9 96 10-108 126-223 (507)
101 TIGR02903 spore_lon_C ATP-depe 87.1 2 4.3E-05 49.0 8.2 112 3-117 283-398 (615)
102 PRK05564 DNA polymerase III su 86.7 4.9 0.00011 41.7 10.3 97 10-113 91-189 (313)
103 PRK09112 DNA polymerase III su 86.5 4.3 9.4E-05 42.5 9.6 100 10-114 139-240 (351)
104 PRK13342 recombination factor 86.4 3.6 7.8E-05 44.6 9.4 103 10-115 90-197 (413)
105 PF14516 AAA_35: AAA-like doma 86.3 12 0.00026 39.0 12.9 105 11-122 126-247 (331)
106 PRK07003 DNA polymerase III su 85.9 4.5 9.8E-05 46.1 9.8 103 11-116 118-223 (830)
107 PF00308 Bac_DnaA: Bacterial d 85.7 3.1 6.8E-05 40.4 7.7 106 4-113 90-207 (219)
108 PRK08084 DNA replication initi 85.7 5.9 0.00013 39.0 9.8 99 14-115 99-210 (235)
109 PRK06620 hypothetical protein; 85.3 5.6 0.00012 38.4 9.2 91 13-108 86-183 (214)
110 PRK14961 DNA polymerase III su 85.0 8 0.00017 41.0 11.0 97 11-110 118-216 (363)
111 PRK14963 DNA polymerase III su 84.8 4.8 0.0001 44.5 9.4 101 11-114 115-218 (504)
112 smart00370 LRR Leucine-rich re 84.8 0.64 1.4E-05 27.2 1.5 21 732-752 2-22 (26)
113 smart00369 LRR_TYP Leucine-ric 84.8 0.64 1.4E-05 27.2 1.5 21 732-752 2-22 (26)
114 KOG4308 LRR-containing protein 84.5 0.011 2.3E-07 64.3 -11.0 155 592-746 113-304 (478)
115 PRK08691 DNA polymerase III su 84.3 5.9 0.00013 44.9 9.8 101 11-114 118-221 (709)
116 PRK12402 replication factor C 83.5 8.8 0.00019 40.3 10.7 99 11-112 124-224 (337)
117 KOG4308 LRR-containing protein 83.2 0.033 7.3E-07 60.5 -7.9 208 530-745 88-331 (478)
118 PRK07940 DNA polymerase III su 82.9 8.9 0.00019 40.9 10.2 96 11-114 116-213 (394)
119 PLN03025 replication factor C 82.5 8 0.00017 40.2 9.6 92 11-108 98-194 (319)
120 smart00365 LRR_SD22 Leucine-ri 82.3 0.93 2E-05 26.6 1.4 17 326-342 1-17 (26)
121 smart00364 LRR_BAC Leucine-ric 81.7 0.85 1.8E-05 26.6 1.1 18 327-344 2-19 (26)
122 PRK05707 DNA polymerase III su 81.4 8.5 0.00018 40.0 9.2 96 12-114 106-203 (328)
123 PRK05642 DNA replication initi 81.0 9.8 0.00021 37.4 9.2 101 15-118 100-212 (234)
124 PRK08903 DnaA regulatory inact 80.7 12 0.00026 36.6 9.7 102 14-118 92-203 (227)
125 PRK14960 DNA polymerase III su 80.4 9.2 0.0002 43.2 9.4 96 11-109 117-214 (702)
126 PRK12323 DNA polymerase III su 80.4 18 0.0004 40.8 11.6 99 10-111 122-222 (700)
127 TIGR02397 dnaX_nterm DNA polym 79.8 18 0.00039 38.3 11.5 102 11-115 116-219 (355)
128 PRK08769 DNA polymerase III su 79.6 8.5 0.00018 39.7 8.4 96 11-115 112-209 (319)
129 PRK14949 DNA polymerase III su 79.1 26 0.00056 41.2 12.7 102 10-114 117-221 (944)
130 PTZ00112 origin recognition co 78.1 88 0.0019 37.0 16.0 191 13-217 870-1084(1164)
131 TIGR01242 26Sp45 26S proteasom 78.0 7.6 0.00017 41.3 7.9 94 11-108 214-328 (364)
132 PRK14087 dnaA chromosomal repl 77.8 16 0.00035 39.9 10.4 103 13-116 207-321 (450)
133 COG3899 Predicted ATPase [Gene 77.4 19 0.00042 42.8 11.6 169 5-181 146-330 (849)
134 PRK07399 DNA polymerase III su 77.1 51 0.0011 34.0 13.3 98 10-114 122-221 (314)
135 PF13516 LRR_6: Leucine Rich r 77.0 0.6 1.3E-05 26.7 -0.5 13 328-340 3-15 (24)
136 PRK14951 DNA polymerase III su 75.8 18 0.00039 41.1 10.1 98 11-111 123-222 (618)
137 PRK14955 DNA polymerase III su 75.7 12 0.00025 40.4 8.5 101 10-113 125-228 (397)
138 PRK14959 DNA polymerase III su 75.5 18 0.0004 40.8 10.1 106 10-118 117-225 (624)
139 PRK00440 rfc replication facto 74.8 17 0.00037 37.7 9.4 97 11-110 101-199 (319)
140 PRK14969 DNA polymerase III su 73.0 20 0.00043 40.1 9.7 100 10-115 117-222 (527)
141 COG1373 Predicted ATPase (AAA+ 71.5 25 0.00055 37.7 9.7 64 12-78 94-163 (398)
142 PRK06305 DNA polymerase III su 71.4 50 0.0011 36.2 12.1 102 11-115 120-224 (451)
143 PRK08451 DNA polymerase III su 71.3 41 0.00089 37.4 11.4 99 11-112 116-216 (535)
144 PRK14956 DNA polymerase III su 70.8 29 0.00064 37.8 9.9 96 10-108 119-216 (484)
145 PRK14957 DNA polymerase III su 69.2 30 0.00064 38.7 9.8 103 10-115 117-222 (546)
146 PRK14970 DNA polymerase III su 68.9 41 0.00089 35.8 10.8 96 11-109 107-204 (367)
147 PRK09111 DNA polymerase III su 68.9 50 0.0011 37.6 11.7 100 11-113 131-232 (598)
148 PRK06090 DNA polymerase III su 68.0 90 0.0019 32.3 12.4 93 11-114 107-201 (319)
149 PRK07764 DNA polymerase III su 66.7 59 0.0013 38.5 12.1 97 10-109 118-216 (824)
150 smart00367 LRR_CC Leucine-rich 66.3 2.8 6.1E-05 24.5 0.7 17 755-771 1-17 (26)
151 PRK04195 replication factor C 66.1 1.3E+02 0.0029 33.3 14.4 163 12-193 98-272 (482)
152 PRK14964 DNA polymerase III su 65.8 31 0.00067 37.9 9.0 96 11-109 115-212 (491)
153 PRK07994 DNA polymerase III su 65.6 33 0.00072 39.1 9.4 102 10-114 117-221 (647)
154 PRK07993 DNA polymerase III su 65.1 46 0.001 34.7 9.8 93 11-111 107-201 (334)
155 PRK14958 DNA polymerase III su 64.7 57 0.0012 36.4 11.0 97 11-110 118-216 (509)
156 PRK13341 recombination factor 64.7 23 0.00049 41.2 8.1 94 11-107 108-210 (725)
157 PRK06871 DNA polymerase III su 64.0 71 0.0015 33.1 10.8 91 11-109 106-198 (325)
158 PRK07133 DNA polymerase III su 63.8 82 0.0018 36.5 12.1 102 11-115 117-221 (725)
159 PRK06964 DNA polymerase III su 63.5 60 0.0013 33.9 10.2 93 11-114 131-225 (342)
160 PRK14971 DNA polymerase III su 63.2 47 0.001 38.0 10.2 96 11-109 120-217 (614)
161 PRK14948 DNA polymerase III su 61.2 1.1E+02 0.0023 35.2 12.5 101 11-114 120-222 (620)
162 smart00368 LRR_RI Leucine rich 60.6 5.9 0.00013 23.7 1.4 14 327-340 2-15 (28)
163 TIGR02880 cbbX_cfxQ probable R 60.5 52 0.0011 33.4 9.1 71 12-82 121-208 (284)
164 COG0593 DnaA ATPase involved i 60.0 44 0.00095 35.6 8.5 101 13-115 176-291 (408)
165 PRK14962 DNA polymerase III su 59.7 45 0.00097 36.7 9.0 105 10-117 115-222 (472)
166 PRK14954 DNA polymerase III su 59.2 52 0.0011 37.5 9.6 100 11-113 126-228 (620)
167 PRK14950 DNA polymerase III su 58.4 89 0.0019 35.7 11.4 101 11-114 119-221 (585)
168 PRK06647 DNA polymerase III su 57.7 1.3E+02 0.0029 33.9 12.4 99 10-111 117-217 (563)
169 PRK14086 dnaA chromosomal repl 57.7 63 0.0014 36.5 9.7 91 14-107 379-481 (617)
170 PRK05896 DNA polymerase III su 57.0 85 0.0018 35.5 10.5 102 12-116 119-223 (605)
171 KOG3763 mRNA export factor TAP 55.5 5.9 0.00013 42.8 1.3 12 659-670 243-254 (585)
172 PRK14953 DNA polymerase III su 54.8 1.5E+02 0.0033 32.9 12.0 100 10-112 117-218 (486)
173 CHL00181 cbbX CbbX; Provisiona 52.8 1E+02 0.0022 31.4 9.8 71 13-83 123-210 (287)
174 PRK08699 DNA polymerase III su 52.8 71 0.0015 33.2 8.7 69 13-81 114-184 (325)
175 PF02463 SMC_N: RecF/RecN/SMC 52.7 17 0.00036 35.3 4.0 47 12-58 158-205 (220)
176 PF02562 PhoH: PhoH-like prote 52.4 18 0.00038 34.5 3.8 44 8-54 112-158 (205)
177 TIGR00362 DnaA chromosomal rep 52.0 82 0.0018 34.1 9.5 93 14-109 201-305 (405)
178 PRK04132 replication factor C 49.8 1.9E+02 0.0042 34.4 12.3 96 12-110 630-727 (846)
179 PRK14952 DNA polymerase III su 49.2 1.6E+02 0.0035 33.4 11.3 104 10-116 116-222 (584)
180 KOG3763 mRNA export factor TAP 47.6 9.3 0.0002 41.4 1.3 67 658-724 216-286 (585)
181 PRK08058 DNA polymerase III su 47.5 1.2E+02 0.0026 31.6 9.5 70 11-80 109-180 (329)
182 PF13401 AAA_22: AAA domain; P 46.8 17 0.00036 31.6 2.7 47 3-51 77-125 (131)
183 PRK14088 dnaA chromosomal repl 46.7 1.4E+02 0.0031 32.5 10.3 96 9-107 191-298 (440)
184 cd00009 AAA The AAA+ (ATPases 45.7 37 0.00079 29.8 4.9 45 9-53 81-131 (151)
185 PRK07132 DNA polymerase III su 45.4 1.2E+02 0.0026 31.0 8.8 95 11-114 89-185 (299)
186 PRK03992 proteasome-activating 45.3 88 0.0019 33.6 8.3 93 11-107 223-336 (389)
187 PRK14965 DNA polymerase III su 44.7 1.1E+02 0.0024 34.7 9.4 101 11-114 118-221 (576)
188 PHA02544 44 clamp loader, smal 43.7 66 0.0014 33.3 7.0 67 11-80 99-171 (316)
189 PRK00149 dnaA chromosomal repl 43.6 1.1E+02 0.0025 33.5 9.1 94 13-109 212-317 (450)
190 PRK10536 hypothetical protein; 43.3 38 0.00083 33.5 4.7 44 8-54 169-215 (262)
191 PRK12422 chromosomal replicati 42.6 1.1E+02 0.0025 33.3 8.7 91 13-106 203-305 (445)
192 PTZ00454 26S protease regulato 41.0 1.3E+02 0.0027 32.4 8.6 94 10-107 236-350 (398)
193 COG2256 MGS1 ATPase related to 36.8 1.7E+02 0.0037 30.9 8.2 146 9-157 101-265 (436)
194 PRK05563 DNA polymerase III su 34.3 4.2E+02 0.0092 30.1 11.8 98 10-110 117-216 (559)
195 PF13177 DNA_pol3_delta2: DNA 33.4 71 0.0015 29.2 4.6 43 11-53 101-143 (162)
196 COG1875 NYN ribonuclease and A 32.0 55 0.0012 33.9 3.8 39 13-54 352-390 (436)
197 PF06144 DNA_pol3_delta: DNA p 30.9 2.4E+02 0.0053 25.7 8.0 98 12-112 57-164 (172)
198 TIGR02881 spore_V_K stage V sp 30.0 3.1E+02 0.0066 27.4 9.0 69 13-83 106-192 (261)
199 KOG2035 Replication factor C, 29.0 4.1E+02 0.0088 26.8 8.8 138 15-155 130-282 (351)
200 PRK07276 DNA polymerase III su 27.8 4E+02 0.0086 27.2 9.2 69 10-79 102-172 (290)
201 PTZ00361 26 proteosome regulat 26.9 92 0.002 33.8 4.8 44 41-84 321-369 (438)
202 cd00561 CobA_CobO_BtuR ATP:cor 26.4 98 0.0021 28.2 4.1 50 4-53 86-139 (159)
203 KOG2227 Pre-initiation complex 26.2 1.7E+02 0.0036 31.7 6.2 114 3-118 245-376 (529)
204 PF07693 KAP_NTPase: KAP famil 25.6 2E+02 0.0043 29.8 7.1 53 3-57 161-219 (325)
205 COG3267 ExeA Type II secretory 24.6 3.8E+02 0.0082 26.6 7.8 105 10-115 128-246 (269)
206 PRK08861 cystathionine gamma-s 24.2 36 0.00077 36.5 1.1 21 3-23 158-178 (388)
207 PRK08116 hypothetical protein; 23.9 86 0.0019 31.5 3.7 46 5-51 172-220 (268)
208 PRK06176 cystathionine gamma-s 23.0 28 0.00062 37.2 0.1 22 2-23 153-174 (380)
209 KOG4062 6-O-methylguanine-DNA 22.1 73 0.0016 28.4 2.3 37 90-131 106-145 (178)
210 PRK07671 cystathionine beta-ly 21.9 50 0.0011 35.3 1.7 22 2-23 153-174 (377)
211 PF00004 AAA: ATPase family as 21.3 1.5E+02 0.0033 25.3 4.5 40 12-51 58-111 (132)
212 TIGR01241 FtsH_fam ATP-depende 21.2 5.2E+02 0.011 28.8 9.6 94 10-107 145-259 (495)
213 TIGR01128 holA DNA polymerase 20.8 8E+02 0.017 24.9 10.4 98 11-111 45-150 (302)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=6e-59 Score=557.49 Aligned_cols=591 Identities=23% Similarity=0.309 Sum_probs=407.7
Q ss_pred HHHHHHcCCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchHHHhhhCCCCeEeCCCCChHhHHHHHHHHh
Q 003435 3 WKLEVYWRGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGRVASMMGTVPTQHLTCLSSEDSWVLFKHFA 82 (820)
Q Consensus 3 ~~l~~~l~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~~~~~~~~~~~~~l~~l~~~~a~~Lf~~~~ 82 (820)
..+++.+++||+||||||||+ .+.|+.+.....+.++||+||||||+++++..++++.+|+|+.++++|||+||++.|
T Consensus 287 ~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~A 364 (1153)
T PLN03210 287 GAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSA 364 (1153)
T ss_pred HHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHh
Confidence 357889999999999999986 477999888777778999999999999999888888899999999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhccCCHHHHHHhhhcchhchhccCcchhhHHHhhhcCCCh-hHHH
Q 003435 83 FGSVEDESTELEEIGQKIVAKCKGLPIAIKTIGSILRSKDKEEWLSVADCDLWTLLEFKSHVLPVLKRSYDNLPW-HLKQ 161 (820)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~k~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~ 161 (820)
|+... +.+++.+++++|+++|+|+|||++++|++|++|+.++|+.++++..... +.+|+++|++||++|++ ..|.
T Consensus 365 f~~~~-~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~---~~~I~~~L~~SYd~L~~~~~k~ 440 (1153)
T PLN03210 365 FKKNS-PPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGL---DGKIEKTLRVSYDGLNNKKDKA 440 (1153)
T ss_pred cCCCC-CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCc---cHHHHHHHHHhhhccCccchhh
Confidence 97743 3567899999999999999999999999999999999999988644322 35699999999999976 5999
Q ss_pred HHhhhcCCCCCcccCHHHHHHHHHHcCCcccCCCCCcHHHHHHHHHHHHhhcccccccccccCCcEEEEEecchHHHHHH
Q 003435 162 CFAYCSIFPKDYWINKEKLVRLWVAEGFIRLDSGSEDLEETADDYFMELLQHSFFDNIVRGIFGEVVMCKVHDYIHFLAQ 241 (820)
Q Consensus 162 ~fl~~a~f~~~~~i~~~~li~~w~~~gl~~~~~~~~~~~~~~~~~l~~L~~~~li~~~~~~~~~~~~~~~~h~~v~~~~~ 241 (820)
||+++|+||.+..++ .+..|.+.+.+.. +..+..|+++++++... ..++||++++++++
T Consensus 441 ~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r 499 (1153)
T PLN03210 441 IFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIGLKNLVDKSLIHVRE-------DIVEMHSLLQEMGK 499 (1153)
T ss_pred hhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhChHHHHhcCCEEEcC-------CeEEhhhHHHHHHH
Confidence 999999999987543 3666776654432 12377899999997542 13799999999999
Q ss_pred HhhcCce-------EEEeccC------CCCCCCceeEEEeecc------CCCCcccCCCCccEEEeeccccc-------c
Q 003435 242 LAAGVEY-------SIVSIRD------SQNIHTDIRHCTLVGD------LSSSTIPRARKLRTLLFLTVKME-------N 295 (820)
Q Consensus 242 ~~~~~~~-------~~~~~~~------~~~~~~~~~~l~l~~~------~~~~~~~~~~~L~~L~l~~n~~~-------~ 295 (820)
.+++.+. +.+.... ...-...++.+++.-. +...+|.++++|+.|.+..+... .
T Consensus 500 ~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~ 579 (1153)
T PLN03210 500 EIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWH 579 (1153)
T ss_pred HHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceee
Confidence 9886542 1111100 0111234455554322 45677999999999999766422 3
Q ss_pred cCccccCC-ceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEEeccCCCCccccchhccCCC
Q 003435 296 LSFPCQEF-QCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSNCYNLEELPKGICQLT 374 (820)
Q Consensus 296 l~~~~~~l-~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~ 374 (820)
+|..|..+ .+|+.|++.++.+..+|..| ...+|++|++++|.+..+|..+..+++|++|+|++|..++.+|. ++.++
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~ 657 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMAT 657 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCC
Confidence 55556655 46999999999999999888 57899999999999999999999999999999999888888886 88999
Q ss_pred CCcEEecCCCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCCCCChhhhhhhcccccccc
Q 003435 375 NLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLKNVVDAEEAKLHDKVHI 454 (820)
Q Consensus 375 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~l~~~~~L 454 (820)
+|++|++++|.....+|..++++++|+.|++..+. .++.+.
T Consensus 658 ~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~---------~L~~Lp------------------------------ 698 (1153)
T PLN03210 658 NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE---------NLEILP------------------------------ 698 (1153)
T ss_pred cccEEEecCCCCccccchhhhccCCCCEEeCCCCC---------CcCccC------------------------------
Confidence 99999999998888889888888777777543211 111100
Q ss_pred ceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCC-CCCCCcccccCCCCccEEEecccccCCCCCCCCCCCCcc
Q 003435 455 RSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYR-GSVFPSWLNSGVPNLVKVSLVDCTCQELPPLGQLPNLKD 533 (820)
Q Consensus 455 ~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~l~~l~~L~~ 533 (820)
..+ .+++|+.|++++|. +..+|. ..++|+.|++++|.+..+|....+++|+.
T Consensus 699 ----------------------~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~lP~~~~l~~L~~ 751 (1153)
T PLN03210 699 ----------------------TGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEFPSNLRLENLDE 751 (1153)
T ss_pred ----------------------CcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcccccccccccccccc
Confidence 000 23456666666553 222222 23466666666666666665334555555
Q ss_pred eeeccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCCC
Q 003435 534 LYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPFI 613 (820)
Q Consensus 534 L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l 613 (820)
|.+.++....... .+.. ..+.....+++|+.|++++|+....+|.
T Consensus 752 L~l~~~~~~~l~~----------~~~~------------------------l~~~~~~~~~sL~~L~Ls~n~~l~~lP~- 796 (1153)
T PLN03210 752 LILCEMKSEKLWE----------RVQP------------------------LTPLMTMLSPSLTRLFLSDIPSLVELPS- 796 (1153)
T ss_pred ccccccchhhccc----------cccc------------------------cchhhhhccccchheeCCCCCCccccCh-
Confidence 5554432111100 0000 0000011234455555555544444332
Q ss_pred CCcCceEecccCCccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeecc
Q 003435 614 RNLKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILH 693 (820)
Q Consensus 614 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 693 (820)
++.++++|+.|++++|...+.+|... ++++|+.|++++|..+..+|.. .++|++|++++
T Consensus 797 -----------------si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~ 855 (1153)
T PLN03210 797 -----------------SIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSR 855 (1153)
T ss_pred -----------------hhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCC
Confidence 45556666666666665555555444 5566666666666555544432 24566666666
Q ss_pred CcccccCccccCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCc
Q 003435 694 CDKLESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPML 745 (820)
Q Consensus 694 n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 745 (820)
|.+ ..+|..+..+++|++|++++|+.+..+|..+..+++|+.+++++|..+
T Consensus 856 n~i-~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 856 TGI-EEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred CCC-ccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 543 345555666666666666666555555555555666666666666543
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=7.8e-60 Score=532.61 Aligned_cols=379 Identities=36% Similarity=0.571 Sum_probs=328.8
Q ss_pred HHHHHHcCCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchHHHhh-hCCCCeEeCCCCChHhHHHHHHHH
Q 003435 3 WKLEVYWRGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGRVASM-MGTVPTQHLTCLSSEDSWVLFKHF 81 (820)
Q Consensus 3 ~~l~~~l~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~~~~~-~~~~~~~~l~~l~~~~a~~Lf~~~ 81 (820)
.+|.+.|++|||+|||||||+. .+|+.++.++|....||||++|||++.||.. +++...+++++|+++|||.||+++
T Consensus 252 ~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~ 329 (889)
T KOG4658|consen 252 SKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKK 329 (889)
T ss_pred HHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHh
Confidence 3688999999999999999986 6799999999999899999999999999998 888889999999999999999999
Q ss_pred hcCCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhccCC-HHHHHHhhhcchhch----hccCcchhhHHHhhhcCCC
Q 003435 82 AFGSVEDESTELEEIGQKIVAKCKGLPIAIKTIGSILRSKD-KEEWLSVADCDLWTL----LEFKSHVLPVLKRSYDNLP 156 (820)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~k~-~~~w~~~~~~~~~~~----~~~~~~i~~~l~~sy~~L~ 156 (820)
||......++.+.++|++|+++|+|+|||+.++|+.|+.|. +.+|+++.+...+.. ....+.|++++++|||.|+
T Consensus 330 v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~ 409 (889)
T KOG4658|consen 330 VGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLP 409 (889)
T ss_pred hccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhh
Confidence 99886666677999999999999999999999999999998 779999988764442 2234679999999999999
Q ss_pred hhHHHHHhhhcCCCCCcccCHHHHHHHHHHcCCcccCCCCCcHHHHHHHHHHHHhhcccccccccccCCcEEEEEecchH
Q 003435 157 WHLKQCFAYCSIFPKDYWINKEKLVRLWVAEGFIRLDSGSEDLEETADDYFMELLQHSFFDNIVRGIFGEVVMCKVHDYI 236 (820)
Q Consensus 157 ~~~k~~fl~~a~f~~~~~i~~~~li~~w~~~gl~~~~~~~~~~~~~~~~~l~~L~~~~li~~~~~~~~~~~~~~~~h~~v 236 (820)
++.|.||+|||+||+|+.|+++.++.+|+|+||+.+..+.+.+++.+++|+.+|++++++...... ++...|+|||++
T Consensus 410 ~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvv 487 (889)
T KOG4658|consen 410 EELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVV 487 (889)
T ss_pred HHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHH
Confidence 999999999999999999999999999999999998767889999999999999999999876543 566789999999
Q ss_pred HHHHHHhhc-----CceEEEecc-CC-----CCCCCceeEEEeecc-C-CCCcccCCCCccEEEeeccc--ccccCcc-c
Q 003435 237 HFLAQLAAG-----VEYSIVSIR-DS-----QNIHTDIRHCTLVGD-L-SSSTIPRARKLRTLLFLTVK--MENLSFP-C 300 (820)
Q Consensus 237 ~~~~~~~~~-----~~~~~~~~~-~~-----~~~~~~~~~l~l~~~-~-~~~~~~~~~~L~~L~l~~n~--~~~l~~~-~ 300 (820)
++++.++++ .+..++... .. .......|++++..+ + ....-..+++|++|.+..|. +..++.. |
T Consensus 488 Re~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff 567 (889)
T KOG4658|consen 488 REMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFF 567 (889)
T ss_pred HHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHH
Confidence 999999999 554444432 11 111245688888877 2 23333456689999999996 7777776 8
Q ss_pred cCCceeEEEEeCCC-CCcccCccccCcccccEEeccCccccccccccccCCcccEEeccCCCCccccchhccCCCCCcEE
Q 003435 301 QEFQCLRVLDLGQS-GIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTL 379 (820)
Q Consensus 301 ~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L 379 (820)
..++.|++|||++| .+.++|+.++.|.+||+|+|+++.|..+|..+++|..|.+|++..+.....+|.....|++|++|
T Consensus 568 ~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL 647 (889)
T ss_pred hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence 88999999999976 45689999999999999999999999999999999999999999988777777777779999999
Q ss_pred ecCCCC
Q 003435 380 DISSCY 385 (820)
Q Consensus 380 ~L~~n~ 385 (820)
.+....
T Consensus 648 ~l~~s~ 653 (889)
T KOG4658|consen 648 RLPRSA 653 (889)
T ss_pred Eeeccc
Confidence 987653
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.5e-45 Score=442.47 Aligned_cols=501 Identities=20% Similarity=0.218 Sum_probs=370.4
Q ss_pred ceeEEEeecc----CCCCcccCCCCccEEEeeccccc-ccCcc-ccCCceeEEEEeCCCCCc-ccCccccCcccccEEec
Q 003435 262 DIRHCTLVGD----LSSSTIPRARKLRTLLFLTVKME-NLSFP-CQEFQCLRVLDLGQSGII-KLPDSIGTLKHLRYLDL 334 (820)
Q Consensus 262 ~~~~l~l~~~----~~~~~~~~~~~L~~L~l~~n~~~-~l~~~-~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L 334 (820)
.++.+.+.++ ..+..+..+++|++|++++|.+. .+|.. +..+++|++|+|++|.+. .+|. +.+++|++|+|
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~L 147 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDL 147 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEEC
Confidence 5677777665 24566889999999999999886 67777 668999999999999997 4554 56889999999
Q ss_pred cCcccc-ccccccccCCcccEEeccCCCCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCcc-
Q 003435 335 SHTYIR-KIPGSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQR- 412 (820)
Q Consensus 335 s~n~i~-~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~- 412 (820)
++|.++ .+|..++++++|++|+|++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|+.|++..+....
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 227 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE 227 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc
Confidence 999998 679899999999999999999889999999999999999999999888999999999999999887776542
Q ss_pred cc---ccccccccCCCCCceeecccCCCCChhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEE
Q 003435 413 FC---AGLGELKLLDLRGRLEIKNLENLKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLD 489 (820)
Q Consensus 413 ~~---~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 489 (820)
.+ ..+++|+.|++.++... ......+.++.+|+.|++++|..... ++..+..+++|+.|+
T Consensus 228 ~p~~l~~l~~L~~L~L~~n~l~----------~~~p~~l~~l~~L~~L~L~~n~l~~~-------~p~~l~~l~~L~~L~ 290 (968)
T PLN00113 228 IPYEIGGLTSLNHLDLVYNNLT----------GPIPSSLGNLKNLQYLFLYQNKLSGP-------IPPSIFSLQKLISLD 290 (968)
T ss_pred CChhHhcCCCCCEEECcCceec----------cccChhHhCCCCCCEEECcCCeeecc-------CchhHhhccCcCEEE
Confidence 22 34566666666654211 11223455667777777776654321 233445567788888
Q ss_pred EecCCCCCCCcccccCCCCccEEEecccccCCC-CC-CCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecC
Q 003435 490 LKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQEL-PP-LGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLF 567 (820)
Q Consensus 490 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l-~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 567 (820)
+++|.+....+..+..+++|+.|++++|.+... |. ++.+++|+.|++++|.+....+ ..++.+++|+.|+++
T Consensus 291 Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p------~~l~~~~~L~~L~Ls 364 (968)
T PLN00113 291 LSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP------KNLGKHNNLTVLDLS 364 (968)
T ss_pred CcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC------hHHhCCCCCcEEECC
Confidence 887776533333334677888888888866543 33 7777888888888877654332 223456777777776
Q ss_pred CCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCC----CCCcCceEecccC--CccccccCCCCCcceE
Q 003435 568 DMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPF----IRNLKNLALCNSN--DKLVCSLSRFPSLSSL 641 (820)
Q Consensus 568 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----l~~L~~L~l~~~~--~~~~~~~~~l~~L~~L 641 (820)
++.- ....+..+..+++|+.|++++|.+.+.+|. +++|+.|++++|. +..+..+..+++|+.|
T Consensus 365 ~n~l-----------~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 433 (968)
T PLN00113 365 TNNL-----------TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL 433 (968)
T ss_pred CCee-----------EeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEE
Confidence 6421 112333344567788888888877766654 6778888888777 4556667778888888
Q ss_pred EccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCC
Q 003435 642 VVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRL 721 (820)
Q Consensus 642 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~ 721 (820)
++++|.+.+.++..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|.+.+.+|..+..+++|+.|++++|++.
T Consensus 434 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 512 (968)
T PLN00113 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS 512 (968)
T ss_pred ECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcce
Confidence 888888887777777778888888888887777766544 4577888888888877778877888888888888888888
Q ss_pred CccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCchhhHHHhccccCCCcccccCCceeEecCceeeec
Q 003435 722 VHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDPIAQMEVVSMTTLNLMAD 801 (820)
Q Consensus 722 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~l~l~~~n~~~~ 801 (820)
+.+|..+.++++|++|++++|.+.+.+|..+.++++|+.|++++|. +.+..+..+..+..|+.+++++ |.+++
T Consensus 513 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~------l~~~~p~~l~~l~~L~~l~ls~-N~l~~ 585 (968)
T PLN00113 513 GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ------LSGEIPKNLGNVESLVQVNISH-NHLHG 585 (968)
T ss_pred eeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCc------ccccCChhHhcCcccCEEeccC-Cccee
Confidence 8888888888888888888888888888888888888888877753 4445666777777888888888 77777
Q ss_pred cCCCc
Q 003435 802 EVPTE 806 (820)
Q Consensus 802 ~~~~~ 806 (820)
.+|..
T Consensus 586 ~~p~~ 590 (968)
T PLN00113 586 SLPST 590 (968)
T ss_pred eCCCc
Confidence 77643
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.9e-43 Score=424.52 Aligned_cols=471 Identities=20% Similarity=0.204 Sum_probs=392.7
Q ss_pred CceeEEEeecc-----CCCCcccCCCCccEEEeecccccccCccccCCceeEEEEeCCCCCc-ccCccccCcccccEEec
Q 003435 261 TDIRHCTLVGD-----LSSSTIPRARKLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGII-KLPDSIGTLKHLRYLDL 334 (820)
Q Consensus 261 ~~~~~l~l~~~-----~~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L 334 (820)
+.++.+.+.++ ++...+..+++|++|++++|.+....+ ...+++|++|+|++|.+. .+|..++.+++|++|+|
T Consensus 93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 171 (968)
T PLN00113 93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP-RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDL 171 (968)
T ss_pred CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC-ccccCCCCEEECcCCcccccCChHHhcCCCCCEEEC
Confidence 45777777765 344556689999999999998864322 256789999999999998 67888999999999999
Q ss_pred cCcccc-ccccccccCCcccEEeccCCCCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCcc-
Q 003435 335 SHTYIR-KIPGSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQR- 412 (820)
Q Consensus 335 s~n~i~-~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~- 412 (820)
++|.+. .+|..++++++|++|+|++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++..+....
T Consensus 172 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 251 (968)
T PLN00113 172 GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP 251 (968)
T ss_pred ccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccc
Confidence 999987 679999999999999999999999999999999999999999999989999999999999999998776542
Q ss_pred c---cccccccccCCCCCceeecccCCCCChhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEE
Q 003435 413 F---CAGLGELKLLDLRGRLEIKNLENLKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLD 489 (820)
Q Consensus 413 ~---~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 489 (820)
. ...+++|+.|++.++... ......+..+.+|+.|++++|.... .++..+..+++|+.|+
T Consensus 252 ~p~~l~~l~~L~~L~L~~n~l~----------~~~p~~l~~l~~L~~L~Ls~n~l~~-------~~p~~~~~l~~L~~L~ 314 (968)
T PLN00113 252 IPSSLGNLKNLQYLFLYQNKLS----------GPIPPSIFSLQKLISLDLSDNSLSG-------EIPELVIQLQNLEILH 314 (968)
T ss_pred cChhHhCCCCCCEEECcCCeee----------ccCchhHhhccCcCEEECcCCeecc-------CCChhHcCCCCCcEEE
Confidence 2 235667777777754211 1222345667899999998876432 2345567788999999
Q ss_pred EecCCCCCCCcccccCCCCccEEEecccccC-CCCC-CCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecC
Q 003435 490 LKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQ-ELPP-LGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLF 567 (820)
Q Consensus 490 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~-~l~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 567 (820)
+++|.+....+..+..+++|+.|++++|.+. .+|. ++.+++|+.|++++|.+....+. .+..+++|+.|++.
T Consensus 315 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~------~~~~~~~L~~L~l~ 388 (968)
T PLN00113 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE------GLCSSGNLFKLILF 388 (968)
T ss_pred CCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh------hHhCcCCCCEEECc
Confidence 9999976544444468999999999999876 4555 89999999999999988765432 23456788888887
Q ss_pred CCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCC----CCCcCceEecccC--CccccccCCCCCcceE
Q 003435 568 DMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPF----IRNLKNLALCNSN--DKLVCSLSRFPSLSSL 641 (820)
Q Consensus 568 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----l~~L~~L~l~~~~--~~~~~~~~~l~~L~~L 641 (820)
++.- ....+..+..+++|+.|++++|.+.+.+|. +++|+.|++++|. +..+..+..+++|+.|
T Consensus 389 ~n~l-----------~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 457 (968)
T PLN00113 389 SNSL-----------EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQML 457 (968)
T ss_pred CCEe-----------cccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEE
Confidence 7532 123444455789999999999998876664 8899999999998 4555667789999999
Q ss_pred EccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCC
Q 003435 642 VVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRL 721 (820)
Q Consensus 642 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~ 721 (820)
++++|.+.+.+|..+ ..++|+.|++++|++.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|+|++|.+.
T Consensus 458 ~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 536 (968)
T PLN00113 458 SLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536 (968)
T ss_pred ECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccc
Confidence 999999998888765 4589999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCc
Q 003435 722 VHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCP 767 (820)
Q Consensus 722 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 767 (820)
+.+|..+..+++|+.|++++|++.+.+|..+.++++|+.|++++|+
T Consensus 537 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred ccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCc
Confidence 9999999999999999999999999999999999999999999975
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-35 Score=298.14 Aligned_cols=391 Identities=20% Similarity=0.218 Sum_probs=259.3
Q ss_pred cEEEeecccccccCcc-ccCC--ceeEEEEeCCCCCccc-CccccCcccccEEeccCccccccccccccCCcccEEeccC
Q 003435 284 RTLLFLTVKMENLSFP-CQEF--QCLRVLDLGQSGIIKL-PDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSN 359 (820)
Q Consensus 284 ~~L~l~~n~~~~l~~~-~~~l--~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~ 359 (820)
+.|+.+.+.++.+... +.++ ..-+.||+++|.+..+ +..|.++++|+.+++..|.++.||...+...+|+.|+|.+
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~ 134 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRH 134 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeec
Confidence 3445555555554333 2222 2345577777777655 4556677777777777777777776555556677777777
Q ss_pred CCCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCCCCC
Q 003435 360 CYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLKN 439 (820)
Q Consensus 360 n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~ 439 (820)
|.+...-.+++..++.|+.||||.|.+ ..+|..
T Consensus 135 N~I~sv~se~L~~l~alrslDLSrN~i-s~i~~~---------------------------------------------- 167 (873)
T KOG4194|consen 135 NLISSVTSEELSALPALRSLDLSRNLI-SEIPKP---------------------------------------------- 167 (873)
T ss_pred cccccccHHHHHhHhhhhhhhhhhchh-hcccCC----------------------------------------------
Confidence 655555555666677777777776642 222210
Q ss_pred hhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEeccccc
Q 003435 440 VVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTC 519 (820)
Q Consensus 440 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~ 519 (820)
.|..-.++++|+|++|.++.+....|.++.+|..|.|+.|.+
T Consensus 168 --------------------------------------sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri 209 (873)
T KOG4194|consen 168 --------------------------------------SFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI 209 (873)
T ss_pred --------------------------------------CCCCCCCceEEeeccccccccccccccccchheeeecccCcc
Confidence 011112455555555555555555555555555555555555
Q ss_pred CCCCC--CCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCccc
Q 003435 520 QELPP--LGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLE 597 (820)
Q Consensus 520 ~~l~~--l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 597 (820)
+.+|. |.++++|+.|+|..|++....+..| .++++|+.|.+..+ .+.....+.|-.+.+++
T Consensus 210 ttLp~r~Fk~L~~L~~LdLnrN~irive~ltF------qgL~Sl~nlklqrN-----------~I~kL~DG~Fy~l~kme 272 (873)
T KOG4194|consen 210 TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTF------QGLPSLQNLKLQRN-----------DISKLDDGAFYGLEKME 272 (873)
T ss_pred cccCHHHhhhcchhhhhhccccceeeehhhhh------cCchhhhhhhhhhc-----------CcccccCcceeeecccc
Confidence 55555 4555555555555555444332222 23333333333221 11111223333566677
Q ss_pred EEEEcCCCCCCCCCCCCCcCceEecccCCccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchh
Q 003435 598 KLVVEGCSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLF 677 (820)
Q Consensus 598 ~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 677 (820)
+|+++.|++... ...++-+++.|+.|++|+|.+...-++.+..+++|++|+|++|++...-+
T Consensus 273 ~l~L~~N~l~~v------------------n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~ 334 (873)
T KOG4194|consen 273 HLNLETNRLQAV------------------NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE 334 (873)
T ss_pred eeecccchhhhh------------------hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCCh
Confidence 777777654331 12356678899999999999999888999999999999999999888878
Q ss_pred hhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCCCccc---cccCCCCCccEEEeccCCCcccccccccC
Q 003435 678 VFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLVHIP---DIMGQHSSLLELSIEGCPMLKLSLKSIEF 754 (820)
Q Consensus 678 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 754 (820)
..|..+..|++|.|++|.+...-...|..+++|++|||++|.+...+. ..|.++++|+.|++.||++..+...+|.+
T Consensus 335 ~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsg 414 (873)
T KOG4194|consen 335 GSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSG 414 (873)
T ss_pred hHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhcc
Confidence 899999999999999998776667788899999999999999877664 45788999999999999988877789999
Q ss_pred CCCcceEEEeCCchhhHHHhccccCCCcccccCCceeEecCceeeec
Q 003435 755 LGQLQRLVIKKCPQLERQRLMNALHESFDPIAQMEVVSMTTLNLMAD 801 (820)
Q Consensus 755 l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~l~l~~~n~~~~ 801 (820)
+++|+.|++.++ .+..+.+.+|..+ +|+.|-+.+.+.+..
T Consensus 415 l~~LE~LdL~~N------aiaSIq~nAFe~m-~Lk~Lv~nSssflCD 454 (873)
T KOG4194|consen 415 LEALEHLDLGDN------AIASIQPNAFEPM-ELKELVMNSSSFLCD 454 (873)
T ss_pred CcccceecCCCC------cceeecccccccc-hhhhhhhcccceEEe
Confidence 999999988874 4566788889888 898888877454443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-35 Score=298.42 Aligned_cols=363 Identities=19% Similarity=0.184 Sum_probs=296.1
Q ss_pred CCccEEEeecccccccCcc-ccCCceeEEEEeCCCCCcccCccccCcccccEEeccCcccccc-ccccccCCcccEEecc
Q 003435 281 RKLRTLLFLTVKMENLSFP-CQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKI-PGSISKLKHLQTLDLS 358 (820)
Q Consensus 281 ~~L~~L~l~~n~~~~l~~~-~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~~~~L~~L~~L~L~ 358 (820)
+.-++|++++|++..+... |.++++|+.+++.+|.++.+|...+...+|+.|+|.+|.|+++ .+++..++.|+.||||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 3557799999999999877 8999999999999999999999888888999999999999998 5789999999999999
Q ss_pred CCCCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCCCC
Q 003435 359 NCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLK 438 (820)
Q Consensus 359 ~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~ 438 (820)
.|.+...--..|..-.++++|+|++|.+...-...
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~--------------------------------------------- 192 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGH--------------------------------------------- 192 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeecccccccccccc---------------------------------------------
Confidence 97655544455777789999999999744322111
Q ss_pred ChhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEecccc
Q 003435 439 NVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCT 518 (820)
Q Consensus 439 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 518 (820)
|..+.+|..|.|+.|.++.+|...|..+++|+.|+|..|.
T Consensus 193 ----------------------------------------F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 193 ----------------------------------------FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred ----------------------------------------ccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence 2233477788889999999999999889999999999997
Q ss_pred cCCCCC--CCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcc
Q 003435 519 CQELPP--LGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCL 596 (820)
Q Consensus 519 ~~~l~~--l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L 596 (820)
+..+.. |.++++|+.|.+..|.+.......|+ ++.++++|++..+ .....-.++.-++++|
T Consensus 233 irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy------~l~kme~l~L~~N-----------~l~~vn~g~lfgLt~L 295 (873)
T KOG4194|consen 233 IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY------GLEKMEHLNLETN-----------RLQAVNEGWLFGLTSL 295 (873)
T ss_pred eeeehhhhhcCchhhhhhhhhhcCcccccCccee------eecccceeecccc-----------hhhhhhcccccccchh
Confidence 776655 88999999999999988877765554 4556666666543 2222334444478888
Q ss_pred cEEEEcCCCCCCCCCCCCCcCceEecccCCccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccch
Q 003435 597 EKLVVEGCSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESL 676 (820)
Q Consensus 597 ~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 676 (820)
+.|++++|.+...- +.++..+++|+.|+|++|++....+.+|..++.|++|+|++|++...-
T Consensus 296 ~~L~lS~NaI~rih------------------~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~ 357 (873)
T KOG4194|consen 296 EQLDLSYNAIQRIH------------------IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLA 357 (873)
T ss_pred hhhccchhhhheee------------------cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHH
Confidence 88888888765422 236777899999999999999988899999999999999999877766
Q ss_pred hhhcCCCCCcceEeeccCcccccC---ccccCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCccccccccc
Q 003435 677 FVFMQSFSSLRHLSILHCDKLESL---PMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIE 753 (820)
Q Consensus 677 ~~~~~~l~~L~~L~l~~n~~~~~~---~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 753 (820)
...|..+++|++|+|++|.+...+ ...|.++++|+.|++.+|++.......|.++++|+.|||.+|.+..+-|.+|.
T Consensus 358 e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe 437 (873)
T KOG4194|consen 358 EGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFE 437 (873)
T ss_pred hhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccc
Confidence 668999999999999999886554 44678899999999999987766667899999999999999999999999999
Q ss_pred CCCCcceEEEe
Q 003435 754 FLGQLQRLVIK 764 (820)
Q Consensus 754 ~l~~L~~L~l~ 764 (820)
.+ .|++|.+.
T Consensus 438 ~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 438 PM-ELKELVMN 447 (873)
T ss_pred cc-hhhhhhhc
Confidence 88 88888643
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=3.2e-34 Score=277.04 Aligned_cols=259 Identities=24% Similarity=0.324 Sum_probs=206.3
Q ss_pred eeEEEeecc---CCCCcccCCCCccEEEeecccccccCccccCCceeEEEEeCCCCCcccCccccCcccccEEeccCccc
Q 003435 263 IRHCTLVGD---LSSSTIPRARKLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYI 339 (820)
Q Consensus 263 ~~~l~l~~~---~~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i 339 (820)
+..+.+..+ ...+.+.++..+.+|.+++|++.++|+.+..+..++.|+.++|++..+|+.++.+..|+.|+.++|.+
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~ 126 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNEL 126 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccce
Confidence 334444444 24455678888999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCcccEEeccCCCCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCccccccccc
Q 003435 340 RKIPGSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGE 419 (820)
Q Consensus 340 ~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~ 419 (820)
.++|++++.+..|+.|+..+|+ +..+|+.++.+.+|..|++.+|... ..|+..-+++.|++++.-.+-....+..+..
T Consensus 127 ~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~ 204 (565)
T KOG0472|consen 127 KELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLETLPPELGG 204 (565)
T ss_pred eecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhhcCChhhcc
Confidence 9999999999999999999855 5678888999999999999999844 4555544599999998888877777755544
Q ss_pred cccC---CCCCceeecccCCCCChhhhhhhccccccccceeeEEeccCCccChhhHHHHhh-ccCCCCCCcEEEEecCCC
Q 003435 420 LKLL---DLRGRLEIKNLENLKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIE-FLRPPHNLKVLDLKGYRG 495 (820)
Q Consensus 420 L~~L---~l~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~L~~n~~ 495 (820)
++.| +++.+ ++. ....+.+|..|.++++..|. .+.++. ....++++..||+..|++
T Consensus 205 l~~L~~LyL~~N-ki~-----------~lPef~gcs~L~Elh~g~N~--------i~~lpae~~~~L~~l~vLDLRdNkl 264 (565)
T KOG0472|consen 205 LESLELLYLRRN-KIR-----------FLPEFPGCSLLKELHVGENQ--------IEMLPAEHLKHLNSLLVLDLRDNKL 264 (565)
T ss_pred hhhhHHHHhhhc-ccc-----------cCCCCCccHHHHHHHhcccH--------HHhhHHHHhcccccceeeecccccc
Confidence 4444 45432 111 12256777777777776554 344443 345788999999999999
Q ss_pred CCCCcccccCCCCccEEEecccccCCCCC-CCCCCCCcceeeccCcCceEe
Q 003435 496 SVFPSWLNSGVPNLVKVSLVDCTCQELPP-LGQLPNLKDLYVKGMSAVQII 545 (820)
Q Consensus 496 ~~~~~~~~~~l~~L~~L~L~~n~~~~l~~-l~~l~~L~~L~L~~n~~~~~~ 545 (820)
..+|..+. -+.+|.+|++++|.++.+|. ++++ .|+.|.+.+|++.++.
T Consensus 265 ke~Pde~c-lLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiR 313 (565)
T KOG0472|consen 265 KEVPDEIC-LLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIR 313 (565)
T ss_pred ccCchHHH-HhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHH
Confidence 99999885 67889999999999999998 9999 9999999999987764
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=6.9e-33 Score=281.72 Aligned_cols=360 Identities=20% Similarity=0.306 Sum_probs=256.7
Q ss_pred CCCccEEEeeccccc--ccCccccCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEEec
Q 003435 280 ARKLRTLLFLTVKME--NLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDL 357 (820)
Q Consensus 280 ~~~L~~L~l~~n~~~--~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L 357 (820)
++-.|-.++++|.+. .+|.....|+.++.|.|...++..+|+.++.+.+|+.|.+++|++.++...++.|+.|+.+++
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV 85 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh
Confidence 344455555666443 344445666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCCCc-cccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCC
Q 003435 358 SNCYNL-EELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLEN 436 (820)
Q Consensus 358 ~~n~~~-~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~ 436 (820)
..|++- ..+|..+.++..|.+||||+|. +...|..
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~------------------------------------------- 121 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTN------------------------------------------- 121 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchhh-hhhcchh-------------------------------------------
Confidence 665532 3455566666666666666664 3333322
Q ss_pred CCChhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEecc
Q 003435 437 LKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVD 516 (820)
Q Consensus 437 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 516 (820)
+...+++-.|+|++|++.++|..+|.+++.|-.|+||+
T Consensus 122 ------------------------------------------LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 122 ------------------------------------------LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred ------------------------------------------hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 22235778899999999999999998999999999999
Q ss_pred cccCCCCC-CCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCc
Q 003435 517 CTCQELPP-LGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPC 595 (820)
Q Consensus 517 n~~~~l~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 595 (820)
|.+..+|+ ...+.+|+.|+|++|++.... +..+|++ ++
T Consensus 160 NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQ---------LrQLPsm--------------------------------ts 198 (1255)
T KOG0444|consen 160 NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQ---------LRQLPSM--------------------------------TS 198 (1255)
T ss_pred chhhhcCHHHHHHhhhhhhhcCCChhhHHH---------HhcCccc--------------------------------hh
Confidence 99999999 999999999999999765421 2234433 33
Q ss_pred ccEEEEcCCCCCC-CCC----CCCCcCceEecccC-CccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEcc
Q 003435 596 LEKLVVEGCSMLN-TLP----FIRNLKNLALCNSN-DKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNE 669 (820)
Q Consensus 596 L~~L~l~~~~~~~-~~~----~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 669 (820)
|++|++++.+.+- .+| .+.+|..++++.|+ -..|..+-.+++|+.|+||+|.++. +....+...+|++|++|.
T Consensus 199 L~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSr 277 (1255)
T KOG0444|consen 199 LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSR 277 (1255)
T ss_pred hhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhcccc
Confidence 4444444433211 222 24555555555555 3455577788888999999988754 233455667889999999
Q ss_pred CCCccchhhhcCCCCCcceEeeccCccc-ccCccccCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCcccc
Q 003435 670 CDNLESLFVFMQSFSSLRHLSILHCDKL-ESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLS 748 (820)
Q Consensus 670 n~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 748 (820)
|+ +..+|.++..+++|+.|.+.+|++. .-+|..++++.+|+.+..++| .+..+|+.++.|+.|+.|.|+.|++.+ +
T Consensus 278 NQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrLiT-L 354 (1255)
T KOG0444|consen 278 NQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRLIT-L 354 (1255)
T ss_pred ch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccceee-c
Confidence 85 4557888889999999999888864 457888999999999988888 567889999999999999999998776 7
Q ss_pred cccccCCCCcceEEEeCCchhh
Q 003435 749 LKSIEFLGQLQRLVIKKCPQLE 770 (820)
Q Consensus 749 ~~~~~~l~~L~~L~l~~~~~L~ 770 (820)
|+.+.-++.|+.||+.++|+|.
T Consensus 355 PeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 355 PEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhhhhhcCCcceeeccCCcCcc
Confidence 8888889999999999988776
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=3.7e-33 Score=269.72 Aligned_cols=149 Identities=16% Similarity=0.154 Sum_probs=76.7
Q ss_pred cCceEecccC-CccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccC
Q 003435 616 LKNLALCNSN-DKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHC 694 (820)
Q Consensus 616 L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 694 (820)
.+..+++.|+ ...|..+..+..+.+.-+.+|...+.+|..+..+++|..|+|++| .+..+|..++.+..|+.|+++.|
T Consensus 390 Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 390 VTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFN 468 (565)
T ss_pred eEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheeccccc
Confidence 4445555555 333434433444433333444444555555555566666666554 34445555555555666666665
Q ss_pred cccccCccccCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCc
Q 003435 695 DKLESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCP 767 (820)
Q Consensus 695 ~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 767 (820)
. ...+|..+..+..++.+-.++|++...-|..+.++.+|.+||+.+|.+.. +|..++++++|++|++.|+|
T Consensus 469 r-Fr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~-IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 469 R-FRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ-IPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred c-cccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh-CChhhccccceeEEEecCCc
Confidence 3 33445555444555555445554444434445555666666666655443 44455666666666655543
No 10
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.95 E-value=1.4e-29 Score=260.91 Aligned_cols=190 Identities=42% Similarity=0.632 Sum_probs=148.8
Q ss_pred HHHHHHHcCCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchHHHhhhCC-CCeEeCCCCChHhHHHHHHH
Q 003435 2 WWKLEVYWRGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGRVASMMGT-VPTQHLTCLSSEDSWVLFKH 80 (820)
Q Consensus 2 ~~~l~~~l~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~~~~~~~~-~~~~~l~~l~~~~a~~Lf~~ 80 (820)
.+.+++.|+++++||||||||+. ..|+.+...++....||+||||||++.++..++. ...|++++|+++||++||++
T Consensus 91 ~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~ 168 (287)
T PF00931_consen 91 QDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKK 168 (287)
T ss_dssp HHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHH
T ss_pred cccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 46789999999999999999874 6898888888777789999999999999887654 56899999999999999999
Q ss_pred HhcCCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhccCC-HHHHHHhhhcchhchhc---cCcchhhHHHhhhcCCC
Q 003435 81 FAFGSVEDESTELEEIGQKIVAKCKGLPIAIKTIGSILRSKD-KEEWLSVADCDLWTLLE---FKSHVLPVLKRSYDNLP 156 (820)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~k~-~~~w~~~~~~~~~~~~~---~~~~i~~~l~~sy~~L~ 156 (820)
.++.......+...+.+++|+++|+|+||||+++|++|+.+. ..+|+.++++......+ ....+..++++||+.|+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~ 248 (287)
T PF00931_consen 169 RAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLP 248 (287)
T ss_dssp HHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCC
Confidence 998765223455677899999999999999999999996554 88999888765444432 23568999999999999
Q ss_pred hhHHHHHhhhcCCCCCcccCHHHHHHHHHHcCCcccC
Q 003435 157 WHLKQCFAYCSIFPKDYWINKEKLVRLWVAEGFIRLD 193 (820)
Q Consensus 157 ~~~k~~fl~~a~f~~~~~i~~~~li~~w~~~gl~~~~ 193 (820)
++.|.||++||+||+++.|+++.++++|+++|++...
T Consensus 249 ~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 249 DELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp TCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999999999999999999999999998754
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.95 E-value=9.2e-31 Score=279.24 Aligned_cols=215 Identities=21% Similarity=0.221 Sum_probs=140.6
Q ss_pred CCCcccEEEEcCCCCCCCCCC---CCCcCceEecccC-Cccccc-cCCCCC-cceEEccCCCCCccccccCCCCCCccEE
Q 003435 592 PFPCLEKLVVEGCSMLNTLPF---IRNLKNLALCNSN-DKLVCS-LSRFPS-LSSLVVDNFPELNCLSDKTGNLNSLVKL 665 (820)
Q Consensus 592 ~~~~L~~L~l~~~~~~~~~~~---l~~L~~L~l~~~~-~~~~~~-~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~~L~~L 665 (820)
...+|++|.+..|......|+ ++.|++|++..|. ...+.. +..... |+.|+.+.|.+.......-..++.|+.|
T Consensus 285 ~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~L 364 (1081)
T KOG0618|consen 285 RITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQEL 364 (1081)
T ss_pred hhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHH
Confidence 455677777777765444333 5567777777776 333321 222222 5556666666554443333456778888
Q ss_pred EEccCCCccchhhhcCCCCCcceEeeccCcccccCc-cccCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCC
Q 003435 666 TVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLP-MSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPM 744 (820)
Q Consensus 666 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 744 (820)
++.+|.+.....+.+.++++|+.|+|++|.+ +.+| ..+.++..|+.|+||+|+ ++.+|..+..++.|++|...+|.+
T Consensus 365 ylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL-~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~l 442 (1081)
T KOG0618|consen 365 YLANNHLTDSCFPVLVNFKHLKVLHLSYNRL-NSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQL 442 (1081)
T ss_pred HHhcCcccccchhhhccccceeeeeeccccc-ccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCce
Confidence 9999988887777888889999999999874 4454 456788899999999985 456678888899999999999886
Q ss_pred cccccccccCCCCcceEEEeCCchhhHHHhccccCCCcccccCCceeEecCceeeeccCCCcccccchhhhhh
Q 003435 745 LKLSLKSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDPIAQMEVVSMTTLNLMADEVPTETDAGASLREKN 817 (820)
Q Consensus 745 ~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~l~l~~~n~~~~~~~~~~~~~~~L~~L~ 817 (820)
.. .| .+..++.|+.+|++.+ +|+...+....+ -++|++||+++ |.-...--..|..+.++...+
T Consensus 443 ~~-fP-e~~~l~qL~~lDlS~N-~L~~~~l~~~~p-----~p~LkyLdlSG-N~~l~~d~~~l~~l~~l~~~~ 506 (1081)
T KOG0618|consen 443 LS-FP-ELAQLPQLKVLDLSCN-NLSEVTLPEALP-----SPNLKYLDLSG-NTRLVFDHKTLKVLKSLSQMD 506 (1081)
T ss_pred ee-ch-hhhhcCcceEEecccc-hhhhhhhhhhCC-----CcccceeeccC-CcccccchhhhHHhhhhhhee
Confidence 65 45 6788899999988764 444333222211 27899999988 432222223444455544433
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=1.8e-30 Score=264.18 Aligned_cols=359 Identities=18% Similarity=0.253 Sum_probs=298.5
Q ss_pred CCceeEEEEeCCCCCc--ccCccccCcccccEEeccCccccccccccccCCcccEEeccCCCCccccchhccCCCCCcEE
Q 003435 302 EFQCLRVLDLGQSGII--KLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTL 379 (820)
Q Consensus 302 ~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L 379 (820)
-++-.+-.|+++|.++ .+|.....++.++.|.|..+.+..+|..++.|.+|++|.+++|+++.. -..++.++.|+.+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLRSV 83 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhHHH
Confidence 3566788999999998 689999999999999999999999999999999999999999776544 4458889999999
Q ss_pred ecCCCCCc-cccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCCCCChhhhhhhccccccccceee
Q 003435 380 DISSCYSL-THMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLKNVVDAEEAKLHDKVHIRSLG 458 (820)
Q Consensus 380 ~L~~n~~~-~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~ 458 (820)
.+.+|++. ..+|..+.+
T Consensus 84 ~~R~N~LKnsGiP~diF~-------------------------------------------------------------- 101 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFR-------------------------------------------------------------- 101 (1255)
T ss_pred hhhccccccCCCCchhcc--------------------------------------------------------------
Confidence 99988632 223433322
Q ss_pred EEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEecccccCCCCC--CCCCCCCcceee
Q 003435 459 LSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELPP--LGQLPNLKDLYV 536 (820)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~--l~~l~~L~~L~L 536 (820)
+..|+.|+|+.|++...|... ....++-.|+||+|++..+|. +.++.-|-.|+|
T Consensus 102 -----------------------l~dLt~lDLShNqL~EvP~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 102 -----------------------LKDLTILDLSHNQLREVPTNL-EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDL 157 (1255)
T ss_pred -----------------------cccceeeecchhhhhhcchhh-hhhcCcEEEEcccCccccCCchHHHhhHhHhhhcc
Confidence 346788899999999999877 467899999999999999998 888999999999
Q ss_pred ccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCC----CCCCCC
Q 003435 537 KGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSM----LNTLPF 612 (820)
Q Consensus 537 ~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~ 612 (820)
++|++...++ ....+..|++|++++|++ +..+|.
T Consensus 158 S~NrLe~LPP------------------------------------------Q~RRL~~LqtL~Ls~NPL~hfQLrQLPs 195 (1255)
T KOG0444|consen 158 SNNRLEMLPP------------------------------------------QIRRLSMLQTLKLSNNPLNHFQLRQLPS 195 (1255)
T ss_pred ccchhhhcCH------------------------------------------HHHHHhhhhhhhcCCChhhHHHHhcCcc
Confidence 9987654432 111455678888888876 457889
Q ss_pred CCCcCceEecccC---CccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceE
Q 003435 613 IRNLKNLALCNSN---DKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHL 689 (820)
Q Consensus 613 l~~L~~L~l~~~~---~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 689 (820)
+.+|+.|.+++.+ ..+|.++..+.+|..+++|.|.+ ..+|.++-++++|+.|+||+|.+.+ +........+|++|
T Consensus 196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L-p~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtL 273 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL-PIVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETL 273 (1255)
T ss_pred chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC-CcchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhh
Confidence 9999999999987 67788999999999999999985 4678889999999999999997665 33456677899999
Q ss_pred eeccCcccccCccccCCCCcccEEEecCCCCC-CccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCch
Q 003435 690 SILHCDKLESLPMSLEKFCSLQKLDIVECPRL-VHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCPQ 768 (820)
Q Consensus 690 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~ 768 (820)
++++|+ +..+|.++.++++|+.|.+.+|++. .-+|..++.+.+|+.+..++|. +...|+.+..|+.|+.|.++.+..
T Consensus 274 NlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 274 NLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred ccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCchhhhhhHHHHHhcccccce
Confidence 999998 6689999999999999999999875 4689999999999999999997 567899999999999998887665
Q ss_pred hhHHHhccccCCCcccccCCceeEecCceeee
Q 003435 769 LERQRLMNALHESFDPIAQMEVVSMTTLNLMA 800 (820)
Q Consensus 769 L~~~~~~~~~~~~~~~l~~L~~l~l~~~n~~~ 800 (820)
++ .|++..-++.|..|++..+..+-
T Consensus 352 iT-------LPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 352 IT-------LPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ee-------chhhhhhcCCcceeeccCCcCcc
Confidence 55 57778889999999999864444
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.95 E-value=4.2e-30 Score=274.27 Aligned_cols=456 Identities=20% Similarity=0.196 Sum_probs=264.5
Q ss_pred cCCCCccEEEeecccccccCccccCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEEec
Q 003435 278 PRARKLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDL 357 (820)
Q Consensus 278 ~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L 357 (820)
.+.-+|++|++++|.+...|..+..+.+|+.|+++.|.|..+|.+..++.+|++|+|.+|.+..+|.++..+++|++|++
T Consensus 42 ~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 42 EKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDL 121 (1081)
T ss_pred hheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhccccccc
Confidence 34445777777777777777767777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCCCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCcc-cccccccccc-CCCCCceeecccC
Q 003435 358 SNCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQR-FCAGLGELKL-LDLRGRLEIKNLE 435 (820)
Q Consensus 358 ~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~-~~~~l~~L~~-L~l~~~~~~~~l~ 435 (820)
+.| ..+.+|..+..++.++.+..++|..+..++... .+.+++..+.... +...+..++. ++++.+-..
T Consensus 122 S~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~-----ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~---- 191 (1081)
T KOG0618|consen 122 SFN-HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTS-----IKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME---- 191 (1081)
T ss_pred chh-ccCCCchhHHhhhHHHHHhhhcchhhhhhcccc-----chhhhhhhhhcccchhcchhhhheeeecccchhh----
Confidence 774 355666666667777777777663222222211 2222222111111 1112222222 333322100
Q ss_pred CCCChhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEec
Q 003435 436 NLKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLV 515 (820)
Q Consensus 436 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 515 (820)
...+..+..++.+....|....+.. .-++++.|+.+.|.+....... .-.+|++++++
T Consensus 192 ---------~~dls~~~~l~~l~c~rn~ls~l~~-----------~g~~l~~L~a~~n~l~~~~~~p--~p~nl~~~dis 249 (1081)
T KOG0618|consen 192 ---------VLDLSNLANLEVLHCERNQLSELEI-----------SGPSLTALYADHNPLTTLDVHP--VPLNLQYLDIS 249 (1081)
T ss_pred ---------hhhhhhccchhhhhhhhcccceEEe-----------cCcchheeeeccCcceeecccc--ccccceeeecc
Confidence 1112222223333222222211111 1134555555555444222211 23455555555
Q ss_pred ccccCCCCC-CCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCC
Q 003435 516 DCTCQELPP-LGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFP 594 (820)
Q Consensus 516 ~n~~~~l~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 594 (820)
.|.++.+|. ++.+.+|+.+...+|.++.... .+....+|+.|....+ .++. ++.....+.
T Consensus 250 ~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~-------ri~~~~~L~~l~~~~n-el~y-----------ip~~le~~~ 310 (1081)
T KOG0618|consen 250 HNNLSNLPEWIGACANLEALNANHNRLVALPL-------RISRITSLVSLSAAYN-ELEY-----------IPPFLEGLK 310 (1081)
T ss_pred hhhhhcchHHHHhcccceEecccchhHHhhHH-------HHhhhhhHHHHHhhhh-hhhh-----------CCCcccccc
Confidence 555555555 5555555555555555533321 1112233333333322 1111 122222567
Q ss_pred cccEEEEcCCCCCCCCCC------CCCcCceEecccCCccccccC--CCCCcceEEccCCCCCccccccCCCCCCccEEE
Q 003435 595 CLEKLVVEGCSMLNTLPF------IRNLKNLALCNSNDKLVCSLS--RFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLT 666 (820)
Q Consensus 595 ~L~~L~l~~~~~~~~~~~------l~~L~~L~l~~~~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 666 (820)
+|++|++..|.+.. +|. ...+..|..+.+......+.+ .++.|+.|++.+|.+.+.....+.++..|+.|+
T Consensus 311 sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLh 389 (1081)
T KOG0618|consen 311 SLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLH 389 (1081)
T ss_pred eeeeeeehhccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeee
Confidence 77888887775433 332 112444444444432222332 367789999999999888777888999999999
Q ss_pred EccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCcc
Q 003435 667 VNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLK 746 (820)
Q Consensus 667 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 746 (820)
|++|++.......+.++..|++|+||+|. +..+|..+..+..|++|...+|++. ..| .+.+++.|+.+|+|.|++..
T Consensus 390 LsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 390 LSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred ecccccccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence 99997665555588889999999999987 5678888889999999998888654 556 57889999999999999877
Q ss_pred cc-cccccCCCCcceEEEeCCchhhHHHhccccCCCcccccCCceeEecC
Q 003435 747 LS-LKSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDPIAQMEVVSMTT 795 (820)
Q Consensus 747 ~~-~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~l~l~~ 795 (820)
.. |..... ++|++||++|++.+. .....+..+.++...++.-
T Consensus 467 ~~l~~~~p~-p~LkyLdlSGN~~l~------~d~~~l~~l~~l~~~~i~~ 509 (1081)
T KOG0618|consen 467 VTLPEALPS-PNLKYLDLSGNTRLV------FDHKTLKVLKSLSQMDITL 509 (1081)
T ss_pred hhhhhhCCC-cccceeeccCCcccc------cchhhhHHhhhhhheeccc
Confidence 43 333322 899999999987533 2233444555555555544
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=2.5e-24 Score=259.33 Aligned_cols=416 Identities=25% Similarity=0.331 Sum_probs=286.3
Q ss_pred HHHHHHHHHcCCcccCCCCCcHHHHHHHHHHHHhhcccccccccccCCcEEEEEecchHHHHHHHhhcCce---EEEecc
Q 003435 178 EKLVRLWVAEGFIRLDSGSEDLEETADDYFMELLQHSFFDNIVRGIFGEVVMCKVHDYIHFLAQLAAGVEY---SIVSIR 254 (820)
Q Consensus 178 ~~li~~w~~~gl~~~~~~~~~~~~~~~~~l~~L~~~~li~~~~~~~~~~~~~~~~h~~v~~~~~~~~~~~~---~~~~~~ 254 (820)
...++.++..+++....+...|++..+++..+.+...... .++..+...++.+.+......+.+. ......
T Consensus 469 ~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~------~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~ 542 (1153)
T PLN03210 469 NIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNE------PGEREFLVDAKDICDVLEDNTGTKKVLGITLDID 542 (1153)
T ss_pred hhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCC------CCcceeEeCHHHHHHHHHhCcccceeeEEEeccC
Confidence 3346778888888776566678888888777776554311 1111223333333332222222111 111111
Q ss_pred CCC---------CCCCceeEEEeecc----------CCCCcccCC-CCccEEEeecccccccCccccCCceeEEEEeCCC
Q 003435 255 DSQ---------NIHTDIRHCTLVGD----------LSSSTIPRA-RKLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQS 314 (820)
Q Consensus 255 ~~~---------~~~~~~~~l~l~~~----------~~~~~~~~~-~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n 314 (820)
... .-..+++.+.+..+ ..+..+..+ ++|+.|.+.++.+..+|..| ...+|+.|++++|
T Consensus 543 ~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s 621 (1153)
T PLN03210 543 EIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGS 621 (1153)
T ss_pred ccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCc
Confidence 100 11234455544322 012334444 46999999999999999887 4689999999999
Q ss_pred CCcccCccccCcccccEEeccCcc-ccccccccccCCcccEEeccCCCCccccchhccCCCCCcEEecCCCCCccccCcc
Q 003435 315 GIIKLPDSIGTLKHLRYLDLSHTY-IRKIPGSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLG 393 (820)
Q Consensus 315 ~l~~lp~~~~~l~~L~~L~Ls~n~-i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~ 393 (820)
.+..+|.++..+++|++|+|+++. +..+|. ++.+++|++|+|++|.....+|..++++++|+.|++++|...+.+|..
T Consensus 622 ~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 622 KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred cccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence 999999999999999999999875 667874 889999999999999999999999999999999999999888888876
Q ss_pred cCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCCCCChhhhhhhccccccccceeeEEeccCCccChhhHH
Q 003435 394 IGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQ 473 (820)
Q Consensus 394 ~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 473 (820)
+ ++++|+.|++. ++..+..+
T Consensus 701 i-~l~sL~~L~Ls--------------------gc~~L~~~--------------------------------------- 720 (1153)
T PLN03210 701 I-NLKSLYRLNLS--------------------GCSRLKSF--------------------------------------- 720 (1153)
T ss_pred C-CCCCCCEEeCC--------------------CCCCcccc---------------------------------------
Confidence 6 56666555432 21100000
Q ss_pred HHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEecccccCCCCC-CCCCCCCcceeeccCcCceEeCccccCC
Q 003435 474 ALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELPP-LGQLPNLKDLYVKGMSAVQIIGYKFYGN 552 (820)
Q Consensus 474 ~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~~ 552 (820)
+ ...++|+.|++++|.+..+|... .+++|++|.+.++....+.. +..++.+
T Consensus 721 --p---~~~~nL~~L~L~~n~i~~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~--------------------- 772 (1153)
T PLN03210 721 --P---DISTNISWLDLDETAIEEFPSNL--RLENLDELILCEMKSEKLWERVQPLTPL--------------------- 772 (1153)
T ss_pred --c---cccCCcCeeecCCCccccccccc--cccccccccccccchhhccccccccchh---------------------
Confidence 0 01247888999999988888765 47889999988764322221 1110000
Q ss_pred CcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCCCCCcCceEecccCCcccccc
Q 003435 553 DAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPFIRNLKNLALCNSNDKLVCSL 632 (820)
Q Consensus 553 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 632 (820)
....+++|+.|++.+++.+..+ |..+..+++|+.|++++|..++.+|. .
T Consensus 773 -~~~~~~sL~~L~Ls~n~~l~~l-----------P~si~~L~~L~~L~Ls~C~~L~~LP~------------------~- 821 (1153)
T PLN03210 773 -MTMLSPSLTRLFLSDIPSLVEL-----------PSSIQNLHKLEHLEIENCINLETLPT------------------G- 821 (1153)
T ss_pred -hhhccccchheeCCCCCCcccc-----------ChhhhCCCCCCEEECCCCCCcCeeCC------------------C-
Confidence 0012345666666555443332 33344788999999999987777763 1
Q ss_pred CCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccE
Q 003435 633 SRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQK 712 (820)
Q Consensus 633 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 712 (820)
..+++|+.|++++|.....+|.. .++|+.|+|++|.+ ..+|..+..+++|+.|++++|+.+..+|..+..+++|+.
T Consensus 822 ~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i-~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~ 897 (1153)
T PLN03210 822 INLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGI-EEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLET 897 (1153)
T ss_pred CCccccCEEECCCCCcccccccc---ccccCEeECCCCCC-ccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCe
Confidence 25788999999999877766653 46899999999865 457888999999999999999999999999999999999
Q ss_pred EEecCCCCCCcc
Q 003435 713 LDIVECPRLVHI 724 (820)
Q Consensus 713 L~L~~n~~~~~~ 724 (820)
+++++|..+..+
T Consensus 898 L~l~~C~~L~~~ 909 (1153)
T PLN03210 898 VDFSDCGALTEA 909 (1153)
T ss_pred eecCCCcccccc
Confidence 999999766544
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=3.8e-23 Score=200.61 Aligned_cols=408 Identities=16% Similarity=0.096 Sum_probs=244.2
Q ss_pred CccEEEeecccccccCcc-ccCCceeEEEEeCCCCCccc-CccccCcccccEEeccC-ccccccc-cccccCCcccEEec
Q 003435 282 KLRTLLFLTVKMENLSFP-CQEFQCLRVLDLGQSGIIKL-PDSIGTLKHLRYLDLSH-TYIRKIP-GSISKLKHLQTLDL 357 (820)
Q Consensus 282 ~L~~L~l~~n~~~~l~~~-~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~-n~i~~lp-~~~~~L~~L~~L~L 357 (820)
.-..+.+..|.|+.+|+. |..+++||+|||++|.|+.| |++|.+++.|..|-+.+ |.|+.+| ..|++|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 345677888899999888 89999999999999999987 78898888887777766 8899987 67889999999999
Q ss_pred cCCCCccccchhccCCCCCcEEecCCCCCccccCc-ccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCC
Q 003435 358 SNCYNLEELPKGICQLTNLRTLDISSCYSLTHMPL-GIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLEN 436 (820)
Q Consensus 358 ~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~ 436 (820)
.-|.+.......|..+++|..|.+..|. ...++. .|..+..++++.+..+.....+ .++.+..-........+....
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdC-nL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDC-NLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCcccccc-ccchhhhHHhhchhhccccee
Confidence 8888777777888889999999988886 445554 6888888888877665543333 222221111000111111111
Q ss_pred CCC--hhhhhhhccccccc---ccee--eEEecc-CCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCC
Q 003435 437 LKN--VVDAEEAKLHDKVH---IRSL--GLSWSR-NAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPN 508 (820)
Q Consensus 437 ~~~--~~~~~~~~l~~~~~---L~~L--~l~~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~ 508 (820)
... ......+....... ++++ .+.... ..... -..-|..+++|+.|+|++|+++.+....|+.+..
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~c------P~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~ 299 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSIC------PAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAE 299 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcC------hHHHHhhcccceEeccCCCccchhhhhhhcchhh
Confidence 000 00000000100000 1111 000000 00000 0122777899999999999999999999999999
Q ss_pred ccEEEecccccCCCCC--CCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecCCCcc--------ccccccc
Q 003435 509 LVKVSLVDCTCQELPP--LGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPN--------LMEWKGQ 578 (820)
Q Consensus 509 L~~L~L~~n~~~~l~~--l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--------l~~~~~~ 578 (820)
+++|.|..|++..+.. |.++..|+.|+|++|+++.+.+..| ....+|.+|.+..++- +.+|--.
T Consensus 300 l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF------~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~ 373 (498)
T KOG4237|consen 300 LQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF------QTLFSLSTLNLLSNPFNCNCRLAWLGEWLRK 373 (498)
T ss_pred hhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc------cccceeeeeehccCcccCccchHHHHHHHhh
Confidence 9999999999998887 9999999999999999999876544 4566777777765431 2222211
Q ss_pred ccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCCCCCcCceEecccCCccccccCCCCCcceEEccCCCCCccccccCCC
Q 003435 579 MTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGN 658 (820)
Q Consensus 579 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 658 (820)
.. ..+. +.. .....++.+.+++..+...--. .=++. +| ...+..-..++.+....=-.|.....+|..+.
T Consensus 374 ~~-~~~~-~~C-q~p~~~~~~~~~dv~~~~~~c~--~~ee~---~~-~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP- 443 (498)
T KOG4237|consen 374 KS-VVGN-PRC-QSPGFVRQIPISDVAFGDFRCG--GPEEL---GC-LTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIP- 443 (498)
T ss_pred CC-CCCC-CCC-CCCchhccccchhccccccccC--Ccccc---CC-CCCCCCCCCcchhhhhHhhcccchhhcCCCCC-
Confidence 11 0000 100 0122355555555433221000 00000 00 00001112334444433333444444444331
Q ss_pred CCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCC
Q 003435 659 LNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVEC 718 (820)
Q Consensus 659 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n 718 (820)
..-.+|++.+|.+.. +|.. .+.+| .+++++|++...-...|.++++|.+|-|+.|
T Consensus 444 -~d~telyl~gn~~~~-vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 444 -VDVTELYLDGNAITS-VPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred -chhHHHhcccchhcc-cCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 245667777775544 3332 45566 7788888766555556777888888877765
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=1.8e-19 Score=200.48 Aligned_cols=71 Identities=30% Similarity=0.395 Sum_probs=44.3
Q ss_pred eEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEEeccCCCCccccchhccCCCCCcEEecCCCC
Q 003435 306 LRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISSCY 385 (820)
Q Consensus 306 L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~ 385 (820)
-..|++++++++.+|..+. ++|+.|++++|.++.+|.. +++|++|++++|++. .+|.. .++|+.|++++|.
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccCCc
Confidence 4566777777777776554 3677777777777777642 466677777765443 44532 3466666666664
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.81 E-value=5e-22 Score=192.91 Aligned_cols=122 Identities=23% Similarity=0.220 Sum_probs=96.6
Q ss_pred EeecccccccCccccCCceeEEEEeCCCCCcccC-ccccCcccccEEeccCcccccc-ccccccCCcccEEeccCCCCcc
Q 003435 287 LFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLP-DSIGTLKHLRYLDLSHTYIRKI-PGSISKLKHLQTLDLSNCYNLE 364 (820)
Q Consensus 287 ~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~l-p~~~~~L~~L~~L~L~~n~~~~ 364 (820)
+.++-.+..+|..+. ..-..++|..|+|+.|| .+|+.+++||.||||+|.|+.| |.+|..+++|..|-+.+|+.++
T Consensus 52 dCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 52 DCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 344446677776544 35678899999999997 5699999999999999999999 8999999999999998877777
Q ss_pred ccch-hccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCC
Q 003435 365 ELPK-GICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGK 410 (820)
Q Consensus 365 ~lp~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~ 410 (820)
.+|. .|++|..|+.|.+.-|.+.-.....|..|+++..|.++++.+
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~ 176 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI 176 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh
Confidence 7776 488999999999988876555556677777776666655443
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=4.3e-19 Score=197.54 Aligned_cols=92 Identities=18% Similarity=0.097 Sum_probs=71.3
Q ss_pred CccEEEeecccccccCccccCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEEeccCCC
Q 003435 282 KLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSNCY 361 (820)
Q Consensus 282 ~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~ 361 (820)
.-..|+++++.++.+|..+. ++|+.|++++|+++.+|.. +++|++|+|++|.|+.+|.. .++|+.|++++|.
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 34577888888888887754 4788999999999988863 57899999999999988853 4688899999876
Q ss_pred CccccchhccCCCCCcEEecCCCC
Q 003435 362 NLEELPKGICQLTNLRTLDISSCY 385 (820)
Q Consensus 362 ~~~~lp~~~~~l~~L~~L~L~~n~ 385 (820)
+ ..+|.. .++|+.|++++|.
T Consensus 274 L-~~Lp~l---p~~L~~L~Ls~N~ 293 (788)
T PRK15387 274 L-THLPAL---PSGLCKLWIFGNQ 293 (788)
T ss_pred h-hhhhhc---hhhcCEEECcCCc
Confidence 4 455552 3568888888886
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.70 E-value=3.7e-17 Score=183.71 Aligned_cols=94 Identities=18% Similarity=0.290 Sum_probs=57.7
Q ss_pred ccEEEeecccccccCccccCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEEeccCCCC
Q 003435 283 LRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSNCYN 362 (820)
Q Consensus 283 L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~ 362 (820)
...|.+.++.++.+|..+. ++|+.|+|++|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|+|++|.+
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI 253 (754)
T ss_pred ceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCcc
Confidence 4456666666666665432 356677777777777665543 467777777777776665443 3567777776554
Q ss_pred ccccchhccCCCCCcEEecCCCC
Q 003435 363 LEELPKGICQLTNLRTLDISSCY 385 (820)
Q Consensus 363 ~~~lp~~~~~l~~L~~L~L~~n~ 385 (820)
. .+|..+. .+|+.|++++|.
T Consensus 254 ~-~LP~~l~--s~L~~L~Ls~N~ 273 (754)
T PRK15370 254 T-ELPERLP--SALQSLDLFHNK 273 (754)
T ss_pred C-cCChhHh--CCCCEEECcCCc
Confidence 3 5555443 356666766665
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=5.8e-17 Score=182.16 Aligned_cols=80 Identities=16% Similarity=0.306 Sum_probs=62.7
Q ss_pred ceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEEeccCCCCccccchhccCCCCCcEEecCC
Q 003435 304 QCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISS 383 (820)
Q Consensus 304 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~ 383 (820)
.+...|++++++++.+|..+. ++|+.|+|++|.|+.+|..+. ++|++|++++|++ ..+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~L-tsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQL-TSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcc-ccCChhhh--ccccEEECcC
Confidence 357889999999999987664 589999999999999987664 5899999998765 46776553 4789999998
Q ss_pred CCCccccC
Q 003435 384 CYSLTHMP 391 (820)
Q Consensus 384 n~~~~~~p 391 (820)
|.+. .+|
T Consensus 251 N~L~-~LP 257 (754)
T PRK15370 251 NRIT-ELP 257 (754)
T ss_pred CccC-cCC
Confidence 8633 444
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=2.5e-18 Score=147.66 Aligned_cols=124 Identities=27% Similarity=0.394 Sum_probs=70.9
Q ss_pred CCCCccEEEeecccccccCccccCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEEecc
Q 003435 279 RARKLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLS 358 (820)
Q Consensus 279 ~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~ 358 (820)
.+++++.|.+++|++..+|+.+..+.+|++|++++|++.++|..++.++.|+.|+++-|.+..+|..|+.++.|+.|||.
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcc
Confidence 44555555666666666665566666666666666666666666666666666666666665566666666666666665
Q ss_pred CCCCc-cccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCcc
Q 003435 359 NCYNL-EELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKL 403 (820)
Q Consensus 359 ~n~~~-~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 403 (820)
+|++. ..+|..|..++.|+.|+++.|. ...+|..++++++|+.|
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil 155 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQIL 155 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEE
Confidence 55443 3455555555556666665554 34445444444444333
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=3.1e-17 Score=140.97 Aligned_cols=161 Identities=29% Similarity=0.407 Sum_probs=140.4
Q ss_pred ceeEEEeecc---CCCCcccCCCCccEEEeecccccccCccccCCceeEEEEeCCCCCcccCccccCcccccEEeccCcc
Q 003435 262 DIRHCTLVGD---LSSSTIPRARKLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTY 338 (820)
Q Consensus 262 ~~~~l~l~~~---~~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~ 338 (820)
.+.++.++++ .-++.+..+.+|++|.+++|+++.+|..++.+++|+.|++.-|++..+|.+|+.++.|++|||++|.
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynn 113 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNN 113 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccc
Confidence 4566777777 3566788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc--ccccccccCCcccEEeccCCCCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCcccccc
Q 003435 339 IR--KIPGSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAG 416 (820)
Q Consensus 339 i~--~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~ 416 (820)
+. .+|..|..++.|+.|.|+.|. ...+|..++++++|+.|.+..|. .-.+|.+++.++.|++|++..+.....+
T Consensus 114 l~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgnrl~vlp-- 189 (264)
T KOG0617|consen 114 LNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGNRLTVLP-- 189 (264)
T ss_pred cccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccceeeecC--
Confidence 88 679999999999999999955 57888889999999999999997 6679999999999999998877766554
Q ss_pred ccccccCCCCC
Q 003435 417 LGELKLLDLRG 427 (820)
Q Consensus 417 l~~L~~L~l~~ 427 (820)
++|..+++.+
T Consensus 190 -pel~~l~l~~ 199 (264)
T KOG0617|consen 190 -PELANLDLVG 199 (264)
T ss_pred -hhhhhhhhhh
Confidence 3444455443
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.50 E-value=2e-15 Score=158.83 Aligned_cols=63 Identities=22% Similarity=0.238 Sum_probs=30.5
Q ss_pred ccCcccccEEeccCcccc-----ccccccccCCcccEEeccCCCCc------cccchhccCCCCCcEEecCCCC
Q 003435 323 IGTLKHLRYLDLSHTYIR-----KIPGSISKLKHLQTLDLSNCYNL------EELPKGICQLTNLRTLDISSCY 385 (820)
Q Consensus 323 ~~~l~~L~~L~Ls~n~i~-----~lp~~~~~L~~L~~L~L~~n~~~------~~lp~~~~~l~~L~~L~L~~n~ 385 (820)
+..+.+|++|+++++.++ .++..+...++|++|+++++... ..++..+..+++|+.|++++|.
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence 344444555555555542 23444444555555555554332 1223344455566666665554
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.49 E-value=5.2e-15 Score=155.59 Aligned_cols=55 Identities=24% Similarity=0.214 Sum_probs=36.9
Q ss_pred EEeccCcccc--ccccccccCCcccEEeccCCCCcc----ccchhccCCCCCcEEecCCCC
Q 003435 331 YLDLSHTYIR--KIPGSISKLKHLQTLDLSNCYNLE----ELPKGICQLTNLRTLDISSCY 385 (820)
Q Consensus 331 ~L~Ls~n~i~--~lp~~~~~L~~L~~L~L~~n~~~~----~lp~~~~~l~~L~~L~L~~n~ 385 (820)
.|+|.++.++ ..+..+..+.+|+.|++++|.+.. .++..+...++|++|+++++.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~ 62 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE 62 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccc
Confidence 4667777665 345666777778888888876533 345556667778888777764
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.30 E-value=2.3e-12 Score=147.69 Aligned_cols=134 Identities=28% Similarity=0.385 Sum_probs=111.6
Q ss_pred CCcccCCCCccEEEeecccccccCccccCCceeEEEEeCCCC--CcccCc-cccCcccccEEeccCcc-ccccccccccC
Q 003435 274 SSTIPRARKLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSG--IIKLPD-SIGTLKHLRYLDLSHTY-IRKIPGSISKL 349 (820)
Q Consensus 274 ~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~--l~~lp~-~~~~l~~L~~L~Ls~n~-i~~lp~~~~~L 349 (820)
.+........|.+.+.+|.+..++... ..++|++|-+.+|. +..++. .|..++.|++|||++|. +.++|.++++|
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L 594 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL 594 (889)
T ss_pred cccccchhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh
Confidence 344556678899999999998887763 33479999999996 667764 48889999999999886 77999999999
Q ss_pred CcccEEeccCCCCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeC
Q 003435 350 KHLQTLDLSNCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILG 409 (820)
Q Consensus 350 ~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~ 409 (820)
.+|++|+|++ ..+..+|..++++..|.+|++..+.....+|.....|++|++|.+....
T Consensus 595 i~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 595 VHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 9999999999 5567999999999999999999998777777777779999998765443
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=6.2e-11 Score=108.31 Aligned_cols=128 Identities=28% Similarity=0.277 Sum_probs=51.6
Q ss_pred ccCCCCccEEEeecccccccCcccc-CCceeEEEEeCCCCCcccCccccCcccccEEeccCcccccccccc-ccCCcccE
Q 003435 277 IPRARKLRTLLFLTVKMENLSFPCQ-EFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSI-SKLKHLQT 354 (820)
Q Consensus 277 ~~~~~~L~~L~l~~n~~~~l~~~~~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~-~~L~~L~~ 354 (820)
+.+..+++.|++.+|.|+.+. .+. .+.+|++|+|++|.|+.++ .+..+++|++|++++|.|+++++.+ ..+++|++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 345667899999999999885 454 6789999999999999984 5888999999999999999997655 47999999
Q ss_pred EeccCCCCcccc-chhccCCCCCcEEecCCCCCccccCc----ccCCCCCCCccCcee
Q 003435 355 LDLSNCYNLEEL-PKGICQLTNLRTLDISSCYSLTHMPL----GIGKLRPLRKLPAFI 407 (820)
Q Consensus 355 L~L~~n~~~~~l-p~~~~~l~~L~~L~L~~n~~~~~~p~----~~~~l~~L~~L~~~~ 407 (820)
|++++|.+...- -..++.+++|++|++.+|.+... +. .+..+++|+.|+...
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEE
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEE
Confidence 999998764311 13477899999999999986533 22 256677777776543
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.07 E-value=4.2e-12 Score=130.34 Aligned_cols=127 Identities=28% Similarity=0.359 Sum_probs=97.2
Q ss_pred CCCCccEEEeecccccccCccccCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEEecc
Q 003435 279 RARKLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLS 358 (820)
Q Consensus 279 ~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~ 358 (820)
.+..-...+++.|.+..+|..+..|..|+.+.|..|.+..+|..++.+..|++|||+.|+++.+|..+..|+ |+.|-++
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEe
Confidence 344445667788888888888777788888888888888888888888888888888888888887777764 7888888
Q ss_pred CCCCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceee
Q 003435 359 NCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFIL 408 (820)
Q Consensus 359 ~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~ 408 (820)
+ +.++.+|+.++.+..|..||.+.|. +..+|..++.+.+|+.|.+..+
T Consensus 152 N-Nkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn 199 (722)
T KOG0532|consen 152 N-NKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRN 199 (722)
T ss_pred c-CccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhh
Confidence 7 4467778888888888888888886 5667777777777776655443
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.06 E-value=8.1e-12 Score=128.30 Aligned_cols=210 Identities=29% Similarity=0.349 Sum_probs=151.7
Q ss_pred EEeecccccccCcc--ccCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEEeccCCCCc
Q 003435 286 LLFLTVKMENLSFP--CQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSNCYNL 363 (820)
Q Consensus 286 L~l~~n~~~~l~~~--~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~ 363 (820)
|.+++-++..+|.. -..+..-...||+.|++.++|..+..+..|+.+.|.+|.|..||..+.++..|.+|||+.|+ +
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-l 133 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-L 133 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-h
Confidence 44555556666655 24566677899999999999999999999999999999999999999999999999999965 5
Q ss_pred cccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCCCCChhhh
Q 003435 364 EELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLKNVVDA 443 (820)
Q Consensus 364 ~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~ 443 (820)
..+|..++.|+ |+.|-+++|+ ++.+|..++.+..|..|+.+.|.+...+..+..|..|
T Consensus 134 S~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~sl-------------------- 191 (722)
T KOG0532|consen 134 SHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSL-------------------- 191 (722)
T ss_pred hcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHH--------------------
Confidence 67888888776 9999999987 7889999998888998888777666555433333222
Q ss_pred hhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEecccccCCCC
Q 003435 444 EEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELP 523 (820)
Q Consensus 444 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~ 523 (820)
+.+.+..| ....++..+.. -.|..||++.|++..+|..+. .+..|++|.|.+|.++.-|
T Consensus 192 -----------r~l~vrRn--------~l~~lp~El~~-LpLi~lDfScNkis~iPv~fr-~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 192 -----------RDLNVRRN--------HLEDLPEELCS-LPLIRLDFSCNKISYLPVDFR-KMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred -----------HHHHHhhh--------hhhhCCHHHhC-CceeeeecccCceeecchhhh-hhhhheeeeeccCCCCCCh
Confidence 22222211 22233333442 257777888888777777663 6777888888888777766
Q ss_pred C----CCCCCCCcceeeccC
Q 003435 524 P----LGQLPNLKDLYVKGM 539 (820)
Q Consensus 524 ~----l~~l~~L~~L~L~~n 539 (820)
. -+...-.++|+...|
T Consensus 251 AqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 251 AQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred HHHHhccceeeeeeecchhc
Confidence 5 233334455666555
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.01 E-value=2.9e-10 Score=122.93 Aligned_cols=196 Identities=30% Similarity=0.404 Sum_probs=111.8
Q ss_pred EEEeecccccccCccccCCceeEEEEeCCCCCcccCccccCcc-cccEEeccCccccccccccccCCcccEEeccCCCCc
Q 003435 285 TLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLK-HLRYLDLSHTYIRKIPGSISKLKHLQTLDLSNCYNL 363 (820)
Q Consensus 285 ~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~-~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~ 363 (820)
.+....+.+..-......++.++.|++.+|.++.+|.....+. +|++|++++|.+..+|..++.+++|+.|++++|. +
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-L 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-h
Confidence 3455555543333334445667777777777777766666553 6777777777777776666777777777777744 3
Q ss_pred cccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCCCCChhhh
Q 003435 364 EELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLKNVVDA 443 (820)
Q Consensus 364 ~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~ 443 (820)
..+|...+.+++|+.|++++|. ...+|..+.....|+++.+..+....
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~------------------------------- 223 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIE------------------------------- 223 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCccee-------------------------------
Confidence 4445444466777777777765 44455444344444444333321100
Q ss_pred hhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEecccccCCCC
Q 003435 444 EEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELP 523 (820)
Q Consensus 444 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~ 523 (820)
.+..+..+.++..+.+.+|.+..++..+ ..+++++.|++++|.++.++
T Consensus 224 -------------------------------~~~~~~~~~~l~~l~l~~n~~~~~~~~~-~~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 224 -------------------------------LLSSLSNLKNLSGLELSNNKLEDLPESI-GNLSNLETLDLSNNQISSIS 271 (394)
T ss_pred -------------------------------cchhhhhcccccccccCCceeeeccchh-ccccccceeccccccccccc
Confidence 0111222234444445555544444433 35566777777777777777
Q ss_pred CCCCCCCCcceeeccCcCceEe
Q 003435 524 PLGQLPNLKDLYVKGMSAVQII 545 (820)
Q Consensus 524 ~l~~l~~L~~L~L~~n~~~~~~ 545 (820)
.++.+.+++.|+++++.+....
T Consensus 272 ~~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 272 SLGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred cccccCccCEEeccCccccccc
Confidence 7777777777777777665543
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=2.7e-10 Score=104.19 Aligned_cols=92 Identities=34% Similarity=0.444 Sum_probs=26.7
Q ss_pred cccccccCccccCCceeEEEEeCCCCCcccCcccc-CcccccEEeccCccccccccccccCCcccEEeccCCCCccccch
Q 003435 290 TVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDSIG-TLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSNCYNLEELPK 368 (820)
Q Consensus 290 ~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~-~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~ 368 (820)
.+.|+..+. +.+..+++.|+|++|.|+.+. .++ .+.+|+.|+|++|.|++++. +..+++|++|++++|.+.. +++
T Consensus 6 ~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~-i~~ 81 (175)
T PF14580_consen 6 ANMIEQIAQ-YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISS-ISE 81 (175)
T ss_dssp --------------------------------S--TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S--CH
T ss_pred ccccccccc-ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCc-ccc
Confidence 344555543 345557899999999998874 455 57889999999999998864 7788999999999876554 444
Q ss_pred hc-cCCCCCcEEecCCCC
Q 003435 369 GI-CQLTNLRTLDISSCY 385 (820)
Q Consensus 369 ~~-~~l~~L~~L~L~~n~ 385 (820)
.+ ..+++|++|++++|.
T Consensus 82 ~l~~~lp~L~~L~L~~N~ 99 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNK 99 (175)
T ss_dssp HHHHH-TT--EEE-TTS-
T ss_pred chHHhCCcCCEEECcCCc
Confidence 44 468889999998886
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=5.8e-11 Score=118.39 Aligned_cols=73 Identities=18% Similarity=0.183 Sum_probs=50.5
Q ss_pred hHHHHhhccCCCCCCcEEEEecCCCCCCCc-ccccCCCCccEEEecccccCCCCC----CCCCCCCcceeeccCcCce
Q 003435 471 KAQALIEFLRPPHNLKVLDLKGYRGSVFPS-WLNSGVPNLVKVSLVDCTCQELPP----LGQLPNLKDLYVKGMSAVQ 543 (820)
Q Consensus 471 ~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~~~~l~~----l~~l~~L~~L~L~~n~~~~ 543 (820)
+++.+...-..+.+|+.+.|.++.....+. .....+++++.|+|+.|-+..+.+ ..++|+|+.|+|+.|++.-
T Consensus 109 GfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~ 186 (505)
T KOG3207|consen 109 GFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN 186 (505)
T ss_pred cHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC
Confidence 344555555566788888888887766653 233578888889988885555443 5678888888888886543
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=9.6e-11 Score=116.86 Aligned_cols=112 Identities=18% Similarity=0.126 Sum_probs=69.4
Q ss_pred cccCCCCccEEEeecccccccCcc---ccCCceeEEEEeCCCCCcccCcc--ccCcccccEEeccCcccc--cccccccc
Q 003435 276 TIPRARKLRTLLFLTVKMENLSFP---CQEFQCLRVLDLGQSGIIKLPDS--IGTLKHLRYLDLSHTYIR--KIPGSISK 348 (820)
Q Consensus 276 ~~~~~~~L~~L~l~~n~~~~l~~~---~~~l~~L~~L~L~~n~l~~lp~~--~~~l~~L~~L~Ls~n~i~--~lp~~~~~ 348 (820)
....|++++.|+++.|-+.....- ...+++|+.|+|+.|.+....++ -..+++|+.|.|+.|.++ .+-.....
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 345677777777777755543222 46677777777777777643221 235667777777777777 44445556
Q ss_pred CCcccEEeccCCCCccccchhccCCCCCcEEecCCCCCc
Q 003435 349 LKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISSCYSL 387 (820)
Q Consensus 349 L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~ 387 (820)
+|+|+.|+|..|.....-.....-+..|+.|||++|++.
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI 259 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence 777777777776533333333444666777777777643
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.93 E-value=7.1e-10 Score=119.91 Aligned_cols=182 Identities=26% Similarity=0.325 Sum_probs=145.0
Q ss_pred ccCCCCccEEEeecccccccCccccCCc-eeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEE
Q 003435 277 IPRARKLRTLLFLTVKMENLSFPCQEFQ-CLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTL 355 (820)
Q Consensus 277 ~~~~~~L~~L~l~~n~~~~l~~~~~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L 355 (820)
....+.++.|.+.+|.+..++.....+. +|+.|++++|.+..+|..++.+++|+.|++++|.++++|...+.+++|+.|
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 4455789999999999999988777774 999999999999999888999999999999999999999888899999999
Q ss_pred eccCCCCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccC
Q 003435 356 DLSNCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLE 435 (820)
Q Consensus 356 ~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~ 435 (820)
++++|+ +..+|..++....|++|.+++|. ....+..+.+++++..+.+..+...
T Consensus 192 ~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~------------------------ 245 (394)
T COG4886 192 DLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLE------------------------ 245 (394)
T ss_pred eccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceee------------------------
Confidence 999954 67788777778889999999996 3455566666666655532221111
Q ss_pred CCCChhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEec
Q 003435 436 NLKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLV 515 (820)
Q Consensus 436 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 515 (820)
..+..++.+++++.|++++|.++.++. ...+.+++.|+++
T Consensus 246 --------------------------------------~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s 285 (394)
T COG4886 246 --------------------------------------DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLS 285 (394)
T ss_pred --------------------------------------eccchhccccccceecccccccccccc--ccccCccCEEecc
Confidence 002334556679999999999988888 3578999999999
Q ss_pred ccccCCCCC
Q 003435 516 DCTCQELPP 524 (820)
Q Consensus 516 ~n~~~~l~~ 524 (820)
++.+...++
T Consensus 286 ~n~~~~~~~ 294 (394)
T COG4886 286 GNSLSNALP 294 (394)
T ss_pred Cccccccch
Confidence 997776655
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.85 E-value=3.7e-10 Score=106.85 Aligned_cols=134 Identities=25% Similarity=0.202 Sum_probs=111.3
Q ss_pred ccCCCCccEEEeecccccccCccccCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEEe
Q 003435 277 IPRARKLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLD 356 (820)
Q Consensus 277 ~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~ 356 (820)
...++.|+.+++++|.|..+.++..-.+.++.|++|+|++..+-. +..+++|+.||||+|.++++-..-.+|-+.++|.
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 456788999999999999999888888999999999999998744 8899999999999999999887777889999999
Q ss_pred ccCCCCccccchhccCCCCCcEEecCCCCCcccc-CcccCCCCCCCccCceeeCCccc
Q 003435 357 LSNCYNLEELPKGICQLTNLRTLDISSCYSLTHM-PLGIGKLRPLRKLPAFILGKQRF 413 (820)
Q Consensus 357 L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~~~~~~~~~~ 413 (820)
|++|. +..+. .++++.+|..||+++|++.... -..+++++.|+++.+.+|.+...
T Consensus 359 La~N~-iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 359 LAQNK-IETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhh-Hhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 99965 44443 4888999999999999854322 24688999999888877766544
No 35
>PLN03150 hypothetical protein; Provisional
Probab=98.80 E-value=6.3e-09 Score=117.52 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=66.2
Q ss_pred cceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecC
Q 003435 638 LSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVE 717 (820)
Q Consensus 638 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~ 717 (820)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++.+.+|..++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55666666666666666666666666666666666666665666666666666666666666666666666666666666
Q ss_pred CCCCCccccccCCC-CCccEEEeccCCCcc
Q 003435 718 CPRLVHIPDIMGQH-SSLLELSIEGCPMLK 746 (820)
Q Consensus 718 n~~~~~~~~~~~~l-~~L~~L~l~~n~~~~ 746 (820)
|++.+.+|..+... .++..+++.+|....
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcccc
Confidence 66666666555432 345556666655433
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.80 E-value=7.1e-09 Score=117.10 Aligned_cols=110 Identities=16% Similarity=0.099 Sum_probs=97.3
Q ss_pred CccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCCCccccccCCCCCccEEEec
Q 003435 661 SLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIE 740 (820)
Q Consensus 661 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 740 (820)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++.+.+|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999988899899999999999999999888999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccccCC-CCcceEEEeCCchhh
Q 003435 741 GCPMLKLSLKSIEFL-GQLQRLVIKKCPQLE 770 (820)
Q Consensus 741 ~n~~~~~~~~~~~~l-~~L~~L~l~~~~~L~ 770 (820)
+|.+.+.+|..+..+ .++..+++.+|+.+.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcccc
Confidence 999999888887653 467788888876554
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.77 E-value=5.1e-10 Score=108.74 Aligned_cols=134 Identities=14% Similarity=0.126 Sum_probs=71.2
Q ss_pred CCCCCcceEEccCCCCCcc----ccccCCCCCCccEEEEccCCCccc----hhhhcCCCCCcceEeeccCccccc----C
Q 003435 633 SRFPSLSSLVVDNFPELNC----LSDKTGNLNSLVKLTVNECDNLES----LFVFMQSFSSLRHLSILHCDKLES----L 700 (820)
Q Consensus 633 ~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~ 700 (820)
..-+.|+++...+|++-.. +...|...+.|+.+.++.|.+... +...+..+++|+.|||.+|.+... +
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 3445666666666665432 222344556666666666654322 223556666666666666655432 2
Q ss_pred ccccCCCCcccEEEecCCCCCCccccc----c-CCCCCccEEEeccCCCcc----cccccccCCCCcceEEEeCC
Q 003435 701 PMSLEKFCSLQKLDIVECPRLVHIPDI----M-GQHSSLLELSIEGCPMLK----LSLKSIEFLGQLQRLVIKKC 766 (820)
Q Consensus 701 ~~~l~~l~~L~~L~L~~n~~~~~~~~~----~-~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~~ 766 (820)
...+..+++|+.|++++|.+...-... + ...|+|++|.+.+|.+.. .+...+...+.|..|++++|
T Consensus 234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 334455666666666666554422211 1 235666666666666553 12223334566666666655
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.76 E-value=5.3e-10 Score=108.66 Aligned_cols=252 Identities=19% Similarity=0.208 Sum_probs=133.1
Q ss_pred cccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCC----CCCcccc------cCCCCccEEEeccc
Q 003435 448 LHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGS----VFPSWLN------SGVPNLVKVSLVDC 517 (820)
Q Consensus 448 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~----~~~~~~~------~~l~~L~~L~L~~n 517 (820)
+.....+..+++++|.+ .......+...+...++|+..+++.-... .+|..+. ..+++|++|+||+|
T Consensus 26 ~~~~~s~~~l~lsgnt~---G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTF---GTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred hcccCceEEEeccCCch---hHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 33444555666665542 22333334444555556666666653322 2222111 34557777777777
Q ss_pred cc--CCCCC----CCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCC
Q 003435 518 TC--QELPP----LGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQE 591 (820)
Q Consensus 518 ~~--~~l~~----l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~ 591 (820)
.+ ..++. +..+..|++|+|.+|.+-...+.... ..|..|.. ....+
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--------~al~~l~~--------------------~kk~~ 154 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--------RALFELAV--------------------NKKAA 154 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--------HHHHHHHH--------------------HhccC
Confidence 32 23333 45566777777766644322111000 00111110 00111
Q ss_pred CCCcccEEEEcCCCCCCCCCCCCCcCceEecccCCccccccCCCCCcceEEccCCCCCcc----ccccCCCCCCccEEEE
Q 003435 592 PFPCLEKLVVEGCSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPELNC----LSDKTGNLNSLVKLTV 667 (820)
Q Consensus 592 ~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L 667 (820)
.-+.|+++...+|..-. .+. ...-..|...+.|+.+.++.|.+... ....+..++.|+.|||
T Consensus 155 ~~~~Lrv~i~~rNrlen-~ga-------------~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl 220 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLEN-GGA-------------TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDL 220 (382)
T ss_pred CCcceEEEEeecccccc-ccH-------------HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeec
Confidence 44566666666664321 110 00111344556777777777765431 2334667777777777
Q ss_pred ccCCCccch----hhhcCCCCCcceEeeccCcccccCccc----c-CCCCcccEEEecCCCCCCc----cccccCCCCCc
Q 003435 668 NECDNLESL----FVFMQSFSSLRHLSILHCDKLESLPMS----L-EKFCSLQKLDIVECPRLVH----IPDIMGQHSSL 734 (820)
Q Consensus 668 ~~n~~~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~~----l-~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L 734 (820)
.+|.+.... ...+..+++|++|++++|.+......+ + ...++|++|.+.+|.+... +..++...+.|
T Consensus 221 ~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL 300 (382)
T KOG1909|consen 221 RDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDL 300 (382)
T ss_pred ccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhh
Confidence 777665432 235667778888888888765432222 2 2367888888888877642 23445557888
Q ss_pred cEEEeccCCC
Q 003435 735 LELSIEGCPM 744 (820)
Q Consensus 735 ~~L~l~~n~~ 744 (820)
..|+|++|.+
T Consensus 301 ~kLnLngN~l 310 (382)
T KOG1909|consen 301 EKLNLNGNRL 310 (382)
T ss_pred HHhcCCcccc
Confidence 8888888887
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.73 E-value=1.2e-08 Score=76.42 Aligned_cols=58 Identities=40% Similarity=0.593 Sum_probs=43.6
Q ss_pred ceeEEEEeCCCCCcccC-ccccCcccccEEeccCccccccc-cccccCCcccEEeccCCC
Q 003435 304 QCLRVLDLGQSGIIKLP-DSIGTLKHLRYLDLSHTYIRKIP-GSISKLKHLQTLDLSNCY 361 (820)
Q Consensus 304 ~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp-~~~~~L~~L~~L~L~~n~ 361 (820)
++|++|++++|+++.+| ..|.++++|++|++++|.++.+| ..|.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35777778777777776 45777888888888888887774 577788888888887765
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.71 E-value=1.7e-09 Score=102.44 Aligned_cols=63 Identities=21% Similarity=0.258 Sum_probs=50.9
Q ss_pred CCCCCcEEEEecCCCCCCCcccccCCCCccEEEecccccCCCCCCCCCCCCcceeeccCcCceE
Q 003435 481 PPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELPPLGQLPNLKDLYVKGMSAVQI 544 (820)
Q Consensus 481 ~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~l~~l~~L~~L~L~~n~~~~~ 544 (820)
.+++|+.|||++|.++.+..|-. .+.|+++|.|+.|.+..+..++.+-+|..|++++|++...
T Consensus 327 ~L~~L~~LDLS~N~Ls~~~Gwh~-KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~l 389 (490)
T KOG1259|consen 327 ELPQLQLLDLSGNLLAECVGWHL-KLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEEL 389 (490)
T ss_pred hcccceEeecccchhHhhhhhHh-hhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhH
Confidence 34678888888888888877763 6788899999999888888888888888999988876543
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.65 E-value=3.4e-09 Score=114.51 Aligned_cols=102 Identities=28% Similarity=0.391 Sum_probs=48.2
Q ss_pred CCCccEEEeecccccccCccccCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEEeccC
Q 003435 280 ARKLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSN 359 (820)
Q Consensus 280 ~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~ 359 (820)
+..++.+.+..|.+..+...+..+++|+.|++.+|.|..+...+..+++|++|+|++|.|+.+.. +..++.|+.|++++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSG 149 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc-hhhccchhhheecc
Confidence 34444444555555543333455555555555555555553334555555555555555555432 34444455555555
Q ss_pred CCCccccchhccCCCCCcEEecCCC
Q 003435 360 CYNLEELPKGICQLTNLRTLDISSC 384 (820)
Q Consensus 360 n~~~~~lp~~~~~l~~L~~L~L~~n 384 (820)
|.+. .++ .+..+++|+.+++++|
T Consensus 150 N~i~-~~~-~~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 150 NLIS-DIS-GLESLKSLKLLDLSYN 172 (414)
T ss_pred Ccch-hcc-CCccchhhhcccCCcc
Confidence 3322 221 1333444444444444
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.65 E-value=3.1e-08 Score=74.19 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=21.7
Q ss_pred ccEEEecCCCCCCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeC
Q 003435 710 LQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKK 765 (820)
Q Consensus 710 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 765 (820)
|++|++++|++....+..|.++++|++|++++|.+....+..|.++++|++|++++
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcC
Confidence 33344444333322223333344444444444443333333344444444444433
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.59 E-value=8.4e-09 Score=111.46 Aligned_cols=109 Identities=29% Similarity=0.400 Sum_probs=89.4
Q ss_pred CcccCCCCccEEEeecccccccCccccCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccE
Q 003435 275 STIPRARKLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQT 354 (820)
Q Consensus 275 ~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~ 354 (820)
..+..+++|..|++.+|.+..+...+..+++|++|++++|.|+.+ ..+..++.|+.|++++|.|+.++. +..++.|+.
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~ 166 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLISDISG-LESLKSLKL 166 (414)
T ss_pred cccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCcchhccC-Cccchhhhc
Confidence 447788999999999999999876578899999999999999988 446778889999999999998874 556999999
Q ss_pred EeccCCCCccccc-hhccCCCCCcEEecCCCCC
Q 003435 355 LDLSNCYNLEELP-KGICQLTNLRTLDISSCYS 386 (820)
Q Consensus 355 L~L~~n~~~~~lp-~~~~~l~~L~~L~L~~n~~ 386 (820)
+++++|.+...-+ . ...+.+|+.+++.+|.+
T Consensus 167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred ccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence 9999977654443 2 46788899999988863
No 44
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.39 E-value=1.2e-08 Score=101.61 Aligned_cols=274 Identities=20% Similarity=0.297 Sum_probs=154.2
Q ss_pred CCcEEEEecCCCCCCCc--ccccCCCCccEEEeccc-ccCCCCC---CCCCCCCcceeeccCcCceEeCccccCCCcccC
Q 003435 484 NLKVLDLKGYRGSVFPS--WLNSGVPNLVKVSLVDC-TCQELPP---LGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRG 557 (820)
Q Consensus 484 ~L~~L~L~~n~~~~~~~--~~~~~l~~L~~L~L~~n-~~~~l~~---l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~ 557 (820)
-|+.|.+.++......+ .+...+++++.|.+.+| .+++... -..+++|++|++..|...+..... ....+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk----~la~g 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK----YLAEG 214 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH----HHHHh
Confidence 46666666655332222 12245667777766666 3333221 234566666666665433321111 11235
Q ss_pred CCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCC--C----CCCCCcCceEecccCCccccc
Q 003435 558 FPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNT--L----PFIRNLKNLALCNSNDKLVCS 631 (820)
Q Consensus 558 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~----~~l~~L~~L~l~~~~~~~~~~ 631 (820)
+++|++++++.|+.+..- .+.....++..++.+...+|.-.+. + .....+.++++..|.......
T Consensus 215 C~kL~~lNlSwc~qi~~~---------gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~ 285 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGN---------GVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDED 285 (483)
T ss_pred hhhHHHhhhccCchhhcC---------cchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchH
Confidence 666777766666554330 1111222344455555555533220 0 113334455555554222221
Q ss_pred ----cCCCCCcceEEccCCCCCcc--ccccCCCCCCccEEEEccCCCccchhh--hcCCCCCcceEeeccCccccc--Cc
Q 003435 632 ----LSRFPSLSSLVVDNFPELNC--LSDKTGNLNSLVKLTVNECDNLESLFV--FMQSFSSLRHLSILHCDKLES--LP 701 (820)
Q Consensus 632 ----~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~--~~ 701 (820)
-..+..|+.|+.+++...+. +.....+.++|+.|.++.|+..+.... .-.+++.|+.+++..|..... +.
T Consensus 286 ~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~ 365 (483)
T KOG4341|consen 286 LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA 365 (483)
T ss_pred HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHh
Confidence 13466778888887765442 333345678888888888876544321 335678888888888865432 22
Q ss_pred cccCCCCcccEEEecCCCCCCcc-----ccccCCCCCccEEEeccCCCcc-cccccccCCCCcceEEEeCCchhh
Q 003435 702 MSLEKFCSLQKLDIVECPRLVHI-----PDIMGQHSSLLELSIEGCPMLK-LSLKSIEFLGQLQRLVIKKCPQLE 770 (820)
Q Consensus 702 ~~l~~l~~L~~L~L~~n~~~~~~-----~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~~~~L~ 770 (820)
..-.+++.|+.|.+++|...+.. ...-..+..|+.+.+++|+.+. ...+.+..+++|+.+++.+|...+
T Consensus 366 sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 366 SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 22346788999999988776543 2333556778888888888765 334566778888888888887666
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=7.7e-09 Score=98.12 Aligned_cols=66 Identities=20% Similarity=0.344 Sum_probs=38.8
Q ss_pred cCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhh--hcCCCCCcceEeeccCccc
Q 003435 632 LSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFV--FMQSFSSLRHLSILHCDKL 697 (820)
Q Consensus 632 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~--~~~~l~~L~~L~l~~n~~~ 697 (820)
+..|.+|+.|.+.++++.+.+...++.-.+|+.|+|+.|...+.... .+.+|+.|.+|+++.|...
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence 44556666666666666665555566666666666666655443322 4556666666666666543
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=6.8e-09 Score=98.49 Aligned_cols=180 Identities=15% Similarity=0.140 Sum_probs=129.0
Q ss_pred CCcceEEccCCCCCc-cccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccC--ccccCCCCcccE
Q 003435 636 PSLSSLVVDNFPELN-CLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESL--PMSLEKFCSLQK 712 (820)
Q Consensus 636 ~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~l~~l~~L~~ 712 (820)
+.|+.|||++..++. .....+..+.+|+.|.|.++++...+...++.-.+|+.|+++.|...+.. .-.+.+|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 358888998877654 33344677899999999999999988888888999999999999765533 234678999999
Q ss_pred EEecCCCCCCccccc-cC-CCCCccEEEeccCCCcc---cccccccCCCCcceEEEeCCchhhHHHhccccCCCcccccC
Q 003435 713 LDIVECPRLVHIPDI-MG-QHSSLLELSIEGCPMLK---LSLKSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDPIAQ 787 (820)
Q Consensus 713 L~L~~n~~~~~~~~~-~~-~l~~L~~L~l~~n~~~~---~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~ 787 (820)
|+|+.|......... +. --++|..|+++|+.-.- .+..-...+++|..||+++|..++ +.+ ...|.+++.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~-~~~----~~~~~kf~~ 339 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK-NDC----FQEFFKFNY 339 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC-chH----HHHHHhcch
Confidence 999999876644221 11 13678999999886321 122234578999999999998887 332 234567788
Q ss_pred CceeEecCceeeeccCCCcccccchhhhhhcCC
Q 003435 788 MEVVSMTTLNLMADEVPTETDAGASLREKNKHG 820 (820)
Q Consensus 788 L~~l~l~~~n~~~~~~~~~~~~~~~L~~L~L~~ 820 (820)
|+++.++.|-.+...---.+...|+|.+||+.|
T Consensus 340 L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 340 LQHLSLSRCYDIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred heeeehhhhcCCChHHeeeeccCcceEEEEecc
Confidence 899988886544332223466778888888754
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.28 E-value=1.2e-08 Score=101.64 Aligned_cols=292 Identities=17% Similarity=0.225 Sum_probs=193.6
Q ss_pred CCccEEEecccccCCCCC----CCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCC
Q 003435 507 PNLVKVSLVDCTCQELPP----LGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEG 582 (820)
Q Consensus 507 ~~L~~L~L~~n~~~~l~~----l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 582 (820)
..|+.|.+.++.-....+ ...+|++++|.+.+|..++..... .....+++|+.+.+..|+.++.....
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~----sla~~C~~l~~l~L~~c~~iT~~~Lk---- 209 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLL----SLARYCRKLRHLNLHSCSSITDVSLK---- 209 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHH----HHHHhcchhhhhhhcccchhHHHHHH----
Confidence 568999999994333333 567899999999998754432111 11246889999999998877665432
Q ss_pred CccCCCCCCCCCcccEEEEcCCCCCCC--C----CCCCCcCceEecccCCcccccc----CCCCCcceEEccCCCCCcc-
Q 003435 583 TDEFDGMQEPFPCLEKLVVEGCSMLNT--L----PFIRNLKNLALCNSNDKLVCSL----SRFPSLSSLVVDNFPELNC- 651 (820)
Q Consensus 583 ~~~~~~~~~~~~~L~~L~l~~~~~~~~--~----~~l~~L~~L~l~~~~~~~~~~~----~~l~~L~~L~l~~n~~~~~- 651 (820)
.....+++|++|+++.|+.... + .....++.+.+.+|.......+ ..++-+..+++.+|...+.
T Consensus 210 -----~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~ 284 (483)
T KOG4341|consen 210 -----YLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE 284 (483)
T ss_pred -----HHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch
Confidence 1223789999999999987653 1 1255677777777764433332 3456677777777765442
Q ss_pred -ccccCCCCCCccEEEEccCCCccchhh--hcCCCCCcceEeeccCcccccCc-ccc-CCCCcccEEEecCCCCCCc--c
Q 003435 652 -LSDKTGNLNSLVKLTVNECDNLESLFV--FMQSFSSLRHLSILHCDKLESLP-MSL-EKFCSLQKLDIVECPRLVH--I 724 (820)
Q Consensus 652 -~~~~~~~l~~L~~L~L~~n~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~-~~l-~~l~~L~~L~L~~n~~~~~--~ 724 (820)
+...-.++..|+.|+.++|...+..+- .-.+.++|+.|.++.|+..+..- ..+ .+++.|+.+++-.|..... +
T Consensus 285 ~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL 364 (483)
T KOG4341|consen 285 DLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTL 364 (483)
T ss_pred HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhH
Confidence 233345678999999999977654432 45678999999999998654331 112 3578999999999855432 2
Q ss_pred ccccCCCCCccEEEeccCCCcccc-----cccccCCCCcceEEEeCCchhhHHHhccccCCCcccccCCceeEecCceee
Q 003435 725 PDIMGQHSSLLELSIEGCPMLKLS-----LKSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDPIAQMEVVSMTTLNLM 799 (820)
Q Consensus 725 ~~~~~~l~~L~~L~l~~n~~~~~~-----~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~l~l~~~n~~ 799 (820)
-..-.+++.|+.|.+++|...+.. ...-..+..|..+.+++||.++..-+ +.......|+.+++..|...
T Consensus 365 ~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L-----e~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 365 ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL-----EHLSICRNLERIELIDCQDV 439 (483)
T ss_pred hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH-----HHHhhCcccceeeeechhhh
Confidence 223356899999999999876533 23334677899999999998873322 23344557888888887544
Q ss_pred ec-cCCCcccccchhhhh
Q 003435 800 AD-EVPTETDAGASLREK 816 (820)
Q Consensus 800 ~~-~~~~~~~~~~~L~~L 816 (820)
+. .+...-.++|+++..
T Consensus 440 tk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 440 TKEAISRFATHLPNIKVH 457 (483)
T ss_pred hhhhhHHHHhhCccceeh
Confidence 43 344444567766543
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.27 E-value=5.8e-07 Score=61.13 Aligned_cols=38 Identities=37% Similarity=0.523 Sum_probs=18.6
Q ss_pred eeEEEEeCCCCCcccCccccCcccccEEeccCcccccc
Q 003435 305 CLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKI 342 (820)
Q Consensus 305 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~l 342 (820)
+|++|++++|+|+.+|..+++|++|++|++++|.|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 34555555555555544455555555555555555544
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=8.4e-07 Score=84.61 Aligned_cols=103 Identities=20% Similarity=0.150 Sum_probs=64.2
Q ss_pred ccEEEeecccccccCcc--c-cCCceeEEEEeCCCCCccc---CccccCcccccEEeccCcccccccccc-ccCCcccEE
Q 003435 283 LRTLLFLTVKMENLSFP--C-QEFQCLRVLDLGQSGIIKL---PDSIGTLKHLRYLDLSHTYIRKIPGSI-SKLKHLQTL 355 (820)
Q Consensus 283 L~~L~l~~n~~~~l~~~--~-~~l~~L~~L~L~~n~l~~l---p~~~~~l~~L~~L~Ls~n~i~~lp~~~-~~L~~L~~L 355 (820)
+..+.+-++.|...... | ...+.++.+||.+|.|+.. -..+.++++|++|+|+.|.+..--.+. ..+.+|++|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 33444555555544332 2 4567788888888888743 344678888888888888766322222 356778888
Q ss_pred eccCCCCc-cccchhccCCCCCcEEecCCCC
Q 003435 356 DLSNCYNL-EELPKGICQLTNLRTLDISSCY 385 (820)
Q Consensus 356 ~L~~n~~~-~~lp~~~~~l~~L~~L~L~~n~ 385 (820)
-|.+..+. ......+..+|.++.|.++.|+
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 88774332 1233345667777888777774
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.14 E-value=8.5e-08 Score=102.02 Aligned_cols=57 Identities=23% Similarity=0.232 Sum_probs=44.2
Q ss_pred ccccEEeccCccccccccccccCCcccEEeccCCCCccccchhccCCCCCcEEecCCCC
Q 003435 327 KHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISSCY 385 (820)
Q Consensus 327 ~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~ 385 (820)
..|.+.+.++|.++.+-.++.-++.|+.|||++|+....- .+..+++|++|||++|.
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~ 220 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNC 220 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccch
Confidence 3577778888888877777888888888888887765443 57788888888888885
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.11 E-value=1.7e-05 Score=82.03 Aligned_cols=162 Identities=19% Similarity=0.334 Sum_probs=90.8
Q ss_pred CCcccEEEEcCCCCCCCCCCCC-CcCceEecccCC--ccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEcc
Q 003435 593 FPCLEKLVVEGCSMLNTLPFIR-NLKNLALCNSND--KLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNE 669 (820)
Q Consensus 593 ~~~L~~L~l~~~~~~~~~~~l~-~L~~L~l~~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 669 (820)
+.+++.|++++| .++.+|.+| +|+.|.+.+|.. ..+..+ .++|++|++++|.....+| ++|+.|+++.
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~L~L~~ 121 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRSLEIKG 121 (426)
T ss_pred hcCCCEEEeCCC-CCcccCCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccceEEeCC
Confidence 355666666666 344445433 466666665542 122222 3578888888885444444 3577777775
Q ss_pred CCC--ccchhhhcCCCCCcceEeeccCccc--ccCccccCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCc
Q 003435 670 CDN--LESLFVFMQSFSSLRHLSILHCDKL--ESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPML 745 (820)
Q Consensus 670 n~~--~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 745 (820)
+.. ++.+| ++|+.|.+.+++.. ..+|..+ .++|++|++++|.... +|..+ ..+|+.|+++.|...
T Consensus 122 n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~-LP~~L--P~SLk~L~ls~n~~~ 190 (426)
T PRK15386 122 SATDSIKNVP------NGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNII-LPEKL--PESLQSITLHIEQKT 190 (426)
T ss_pred CCCcccccCc------chHhheecccccccccccccccc--CCcccEEEecCCCccc-Ccccc--cccCcEEEecccccc
Confidence 432 22333 35777777543311 1112111 2689999999987553 44433 368999999876422
Q ss_pred c--cccccccCCCCcceEEEeCCchhhHHHhccc
Q 003435 746 K--LSLKSIEFLGQLQRLVIKKCPQLERQRLMNA 777 (820)
Q Consensus 746 ~--~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~ 777 (820)
. .....+. +++ .|++.+|..+.++.+...
T Consensus 191 sLeI~~~sLP--~nl-~L~f~n~lkL~~~~f~d~ 221 (426)
T PRK15386 191 TWNISFEGFP--DGL-DIDLQNSVLLSPDVFKDK 221 (426)
T ss_pred cccCcccccc--ccc-EechhhhcccCHHHhhcc
Confidence 1 1111221 455 788888877776555543
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.07 E-value=3.7e-07 Score=76.64 Aligned_cols=89 Identities=19% Similarity=0.298 Sum_probs=69.7
Q ss_pred CCCCccEEEeecccccccCccc-cCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEEec
Q 003435 279 RARKLRTLLFLTVKMENLSFPC-QEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDL 357 (820)
Q Consensus 279 ~~~~L~~L~l~~n~~~~l~~~~-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L 357 (820)
...+|+..++++|.+..+|+.| ..++.++.|+|++|.+..+|..+..++.|+.|+++.|.+...|..+..|.+|-+|+.
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 3456677788888888888875 455678888888888888888888888888888888888888888888888888888
Q ss_pred cCCCCccccch
Q 003435 358 SNCYNLEELPK 368 (820)
Q Consensus 358 ~~n~~~~~lp~ 368 (820)
.+|.+. .+|.
T Consensus 131 ~~na~~-eid~ 140 (177)
T KOG4579|consen 131 PENARA-EIDV 140 (177)
T ss_pred CCCccc-cCcH
Confidence 885543 4443
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.06 E-value=4.1e-07 Score=76.38 Aligned_cols=108 Identities=19% Similarity=0.249 Sum_probs=86.3
Q ss_pred CccEEEeecccccccCcc---ccCCceeEEEEeCCCCCcccCcccc-CcccccEEeccCccccccccccccCCcccEEec
Q 003435 282 KLRTLLFLTVKMENLSFP---CQEFQCLRVLDLGQSGIIKLPDSIG-TLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDL 357 (820)
Q Consensus 282 ~L~~L~l~~n~~~~l~~~---~~~l~~L~~L~L~~n~l~~lp~~~~-~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L 357 (820)
.+..++++++.+-+++.. +....+|+..+|++|.+..+|+.|. ..+.++.|+|++|.|+.+|..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 344566777766666554 6677889999999999999987764 456899999999999999999999999999999
Q ss_pred cCCCCccccchhccCCCCCcEEecCCCCCccccC
Q 003435 358 SNCYNLEELPKGICQLTNLRTLDISSCYSLTHMP 391 (820)
Q Consensus 358 ~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p 391 (820)
+.|.+ ...|..+..|.+|-.|+..+|. ...+|
T Consensus 108 ~~N~l-~~~p~vi~~L~~l~~Lds~~na-~~eid 139 (177)
T KOG4579|consen 108 RFNPL-NAEPRVIAPLIKLDMLDSPENA-RAEID 139 (177)
T ss_pred ccCcc-ccchHHHHHHHhHHHhcCCCCc-cccCc
Confidence 99664 5667778889999999988886 33344
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.06 E-value=4.2e-06 Score=56.92 Aligned_cols=37 Identities=43% Similarity=0.535 Sum_probs=28.8
Q ss_pred ccccEEeccCccccccccccccCCcccEEeccCCCCc
Q 003435 327 KHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSNCYNL 363 (820)
Q Consensus 327 ~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~ 363 (820)
++|++|++++|.|+++|+.+++|++|++|++++|.+.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 4688888888888888877888888888888887644
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.06 E-value=1.8e-05 Score=81.80 Aligned_cols=133 Identities=23% Similarity=0.307 Sum_probs=71.5
Q ss_pred CCCcCceEecccCCccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeec
Q 003435 613 IRNLKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSIL 692 (820)
Q Consensus 613 l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 692 (820)
+.+++.|++++|.....+. -.++|++|.+++|.....+|..+ .++|+.|++++|..+..+| ++|+.|++.
T Consensus 51 ~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~L~L~ 120 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRSLEIK 120 (426)
T ss_pred hcCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccceEEeC
Confidence 4566777777775222211 12357777777766666555543 2467777777775444444 346666665
Q ss_pred cCcc--cccCccccCCCCcccEEEecCCCCC--CccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCC
Q 003435 693 HCDK--LESLPMSLEKFCSLQKLDIVECPRL--VHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKC 766 (820)
Q Consensus 693 ~n~~--~~~~~~~l~~l~~L~~L~L~~n~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 766 (820)
.+.. ++.+| ++|+.|.+.+++.. ..+|.. -.++|++|++++|.... .|..+. .+|+.|+++.+
T Consensus 121 ~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 121 GSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence 5432 23333 24556666433211 111211 13578888888877553 333332 57777777654
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.03 E-value=3.3e-08 Score=105.07 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=9.8
Q ss_pred CCCCccEEEecccccCC
Q 003435 505 GVPNLVKVSLVDCTCQE 521 (820)
Q Consensus 505 ~l~~L~~L~L~~n~~~~ 521 (820)
.+..|+.|.+.+|.+..
T Consensus 107 pF~sLr~LElrg~~L~~ 123 (1096)
T KOG1859|consen 107 PFRSLRVLELRGCDLST 123 (1096)
T ss_pred cccceeeEEecCcchhh
Confidence 35566666666665443
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=2.3e-06 Score=81.74 Aligned_cols=87 Identities=18% Similarity=0.114 Sum_probs=52.8
Q ss_pred ccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEecccc--cCCCCC-CCC
Q 003435 451 KVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCT--CQELPP-LGQ 527 (820)
Q Consensus 451 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~--~~~l~~-l~~ 527 (820)
+..++.+++.||.+.+ ..++...+..++.|+.|+|+.|.+............+|+.|.|.+.. .+.... +..
T Consensus 70 ~~~v~elDL~~N~iSd-----WseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISD-----WSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred hhhhhhhhcccchhcc-----HHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhc
Confidence 3455666666665432 23444556667788888888877655444433346677777777763 333333 666
Q ss_pred CCCCcceeeccCcCc
Q 003435 528 LPNLKDLYVKGMSAV 542 (820)
Q Consensus 528 l~~L~~L~L~~n~~~ 542 (820)
+|.++.|.++.|...
T Consensus 145 lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 145 LPKVTELHMSDNSLR 159 (418)
T ss_pred chhhhhhhhccchhh
Confidence 777777777776443
No 58
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.68 E-value=0.00099 Score=80.97 Aligned_cols=203 Identities=14% Similarity=0.160 Sum_probs=122.4
Q ss_pred CceEEEEEeCCCCCChhhHH-HHHhhccCCCCCcEEEEecCchHHH---hhhCCCCeEeCC----CCChHhHHHHHHHHh
Q 003435 11 GRGFLIVLDDVWDEDGENME-KALSWLNVGGSGSCVLVTTRSGRVA---SMMGTVPTQHLT----CLSSEDSWVLFKHFA 82 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~-~~~~~~~~~~~gs~iiiTtr~~~~~---~~~~~~~~~~l~----~l~~~~a~~Lf~~~~ 82 (820)
+++++|||||+...+..... .+........++.++|||||...-. .........+++ +|+.+|+.++|....
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~ 199 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL 199 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc
Confidence 67899999999654333333 3333333334567888999984211 111112255666 999999999997755
Q ss_pred cCCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhccCCHHHHHHhhhcchhchhc-cCcchhhHHH-hhhcCCChhHH
Q 003435 83 FGSVEDESTELEEIGQKIVAKCKGLPIAIKTIGSILRSKDKEEWLSVADCDLWTLLE-FKSHVLPVLK-RSYDNLPWHLK 160 (820)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~k~~~~w~~~~~~~~~~~~~-~~~~i~~~l~-~sy~~L~~~~k 160 (820)
+... -.+.+.++.+.|+|.|+++..++..++...... .... ..+.. ....+...+. ..++.|+++.+
T Consensus 200 ~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~ 268 (903)
T PRK04841 200 SSPI------EAAESSRLCDDVEGWATALQLIALSARQNNSSL-HDSA----RRLAGINASHLSDYLVEEVLDNVDLETR 268 (903)
T ss_pred CCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCch-hhhh----HhhcCCCchhHHHHHHHHHHhcCCHHHH
Confidence 3221 134468899999999999999998876443100 0000 11111 1223555433 34889999999
Q ss_pred HHHhhhcCCCCCcccCHHHHHHHHHHcCCcccCCCCCcHHHHHHHHHHHHhhcccccccccccCCcEEEEEecchHHHHH
Q 003435 161 QCFAYCSIFPKDYWINKEKLVRLWVAEGFIRLDSGSEDLEETADDYFMELLQHSFFDNIVRGIFGEVVMCKVHDYIHFLA 240 (820)
Q Consensus 161 ~~fl~~a~f~~~~~i~~~~li~~w~~~gl~~~~~~~~~~~~~~~~~l~~L~~~~li~~~~~~~~~~~~~~~~h~~v~~~~ 240 (820)
..+...|+++. +..+ +.. .+... +.+.+.+..+.+++++.....+. + .++++|++++++.
T Consensus 269 ~~l~~~a~~~~---~~~~-l~~-----~l~~~--------~~~~~~L~~l~~~~l~~~~~~~~-~--~~yr~H~L~r~~l 328 (903)
T PRK04841 269 HFLLRCSVLRS---MNDA-LIV-----RVTGE--------ENGQMRLEELERQGLFIQRMDDS-G--EWFRYHPLFASFL 328 (903)
T ss_pred HHHHHhccccc---CCHH-HHH-----HHcCC--------CcHHHHHHHHHHCCCeeEeecCC-C--CEEehhHHHHHHH
Confidence 99999999862 3322 211 11111 12466788888888864321111 1 3477899999987
Q ss_pred HHhh
Q 003435 241 QLAA 244 (820)
Q Consensus 241 ~~~~ 244 (820)
....
T Consensus 329 ~~~l 332 (903)
T PRK04841 329 RHRC 332 (903)
T ss_pred HHHH
Confidence 6543
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.64 E-value=2.9e-05 Score=73.43 Aligned_cols=86 Identities=24% Similarity=0.309 Sum_probs=62.0
Q ss_pred ccCCceeEEEEeCCCCCcc-----cCccccCcccccEEeccCcccc----ccc-------cccccCCcccEEeccCCCCc
Q 003435 300 CQEFQCLRVLDLGQSGIIK-----LPDSIGTLKHLRYLDLSHTYIR----KIP-------GSISKLKHLQTLDLSNCYNL 363 (820)
Q Consensus 300 ~~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~i~----~lp-------~~~~~L~~L~~L~L~~n~~~ 363 (820)
+.-+..+..++||+|.|.+ +...+.+-.+|++.+++.-... ++| +.+.+||+|+..+||.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 3446778888888888862 3445667778888888764322 222 45677899999999998776
Q ss_pred cccchh----ccCCCCCcEEecCCCC
Q 003435 364 EELPKG----ICQLTNLRTLDISSCY 385 (820)
Q Consensus 364 ~~lp~~----~~~l~~L~~L~L~~n~ 385 (820)
...|+. +++-+.|++|.|++|.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCC
Confidence 666654 5678889999998885
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.52 E-value=2.8e-05 Score=87.81 Aligned_cols=128 Identities=26% Similarity=0.341 Sum_probs=92.2
Q ss_pred CceeEEEeecc------CCCCcccCCCCccEEEeecccccccCcc--ccCCceeEEEEeCCCCCcccCccccCcccccEE
Q 003435 261 TDIRHCTLVGD------LSSSTIPRARKLRTLLFLTVKMENLSFP--CQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYL 332 (820)
Q Consensus 261 ~~~~~l~l~~~------~~~~~~~~~~~L~~L~l~~n~~~~l~~~--~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L 332 (820)
.+++++.+.|. ++......+|.|++|.+.+-.+..-... +.++++|+.||+|+.+++.+ .++++|++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 34666666665 2223345789999999988655443322 78899999999999999988 778999999999
Q ss_pred eccCccccccc--cccccCCcccEEeccCCCCcccc--ch----hccCCCCCcEEecCCCCCccc
Q 003435 333 DLSHTYIRKIP--GSISKLKHLQTLDLSNCYNLEEL--PK----GICQLTNLRTLDISSCYSLTH 389 (820)
Q Consensus 333 ~Ls~n~i~~lp--~~~~~L~~L~~L~L~~n~~~~~l--p~----~~~~l~~L~~L~L~~n~~~~~ 389 (820)
.+.+=.+..-. ..+.+|++|+.||+|........ .. .-..||+|+.||.|++.....
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 99887777432 46788999999999984332211 11 123489999999998764443
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.40 E-value=0.00024 Score=64.56 Aligned_cols=102 Identities=19% Similarity=0.243 Sum_probs=58.3
Q ss_pred CccEEEeecccccccCccccCCceeEEEEeCCCCCcccCccc-cCcccccEEeccCccccccc--cccccCCcccEEecc
Q 003435 282 KLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDSI-GTLKHLRYLDLSHTYIRKIP--GSISKLKHLQTLDLS 358 (820)
Q Consensus 282 ~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~Ls~n~i~~lp--~~~~~L~~L~~L~L~ 358 (820)
+...+++.+|.+..++ .|..++.|..|.|.+|.|+.|.+.+ ..+++|+.|.|.+|+|.++- .-+..+|.|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 3445566666665542 3566666777777777776664333 33455677777777666542 335666677777666
Q ss_pred CCCCccccc---hhccCCCCCcEEecCCC
Q 003435 359 NCYNLEELP---KGICQLTNLRTLDISSC 384 (820)
Q Consensus 359 ~n~~~~~lp---~~~~~l~~L~~L~L~~n 384 (820)
+|.....-- -.+..+++|++||...-
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhh
Confidence 654332100 01556777777776543
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.35 E-value=4.2e-05 Score=86.44 Aligned_cols=128 Identities=17% Similarity=0.046 Sum_probs=89.8
Q ss_pred CCcceEEccCCCCCcc-ccc-cCCCCCCccEEEEccCCCcc-chhhhcCCCCCcceEeeccCcccccCccccCCCCcccE
Q 003435 636 PSLSSLVVDNFPELNC-LSD-KTGNLNSLVKLTVNECDNLE-SLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQK 712 (820)
Q Consensus 636 ~~L~~L~l~~n~~~~~-~~~-~~~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 712 (820)
.+|+.|++++...... .+. .-.-+|+|+.|.+++-.... .+.....++|+|..||+|++++... .+++.+++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 6799999988654432 222 23458999999999855543 3445778899999999999875443 57888999999
Q ss_pred EEecCCCCCC-ccccccCCCCCccEEEeccCCCcccc------cccccCCCCcceEEEeC
Q 003435 713 LDIVECPRLV-HIPDIMGQHSSLLELSIEGCPMLKLS------LKSIEFLGQLQRLVIKK 765 (820)
Q Consensus 713 L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~------~~~~~~l~~L~~L~l~~ 765 (820)
|.+.+-.+.. ..-..+.++++|+.||+|........ -+.-..||.|+.||.++
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 9888876654 22234677999999999987655422 12334578888887775
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.34 E-value=0.0003 Score=63.96 Aligned_cols=100 Identities=21% Similarity=0.155 Sum_probs=55.5
Q ss_pred eEecccCCccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchh-hhcCCCCCcceEeeccCccc
Q 003435 619 LALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLF-VFMQSFSSLRHLSILHCDKL 697 (820)
Q Consensus 619 L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~ 697 (820)
+++++|+......|..++.|..|.+++|+++.+-|..-..+++|..|.|.+|++..... ..+..||+|++|.+-+|+..
T Consensus 47 iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 47 IDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred ecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchh
Confidence 33333333333345566677777777777776666655566677777777765543211 13556667777777666643
Q ss_pred ccC---ccccCCCCcccEEEecCC
Q 003435 698 ESL---PMSLEKFCSLQKLDIVEC 718 (820)
Q Consensus 698 ~~~---~~~l~~l~~L~~L~L~~n 718 (820)
..- --.+..+++|++||.+.-
T Consensus 127 ~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 127 HKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cccCceeEEEEecCcceEeehhhh
Confidence 211 113344566666665543
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.18 E-value=0.00016 Score=68.47 Aligned_cols=90 Identities=20% Similarity=0.218 Sum_probs=64.6
Q ss_pred cccCcccccEEeccCcccc-----ccccccccCCcccEEeccCCCCccc----cc-------hhccCCCCCcEEecCCCC
Q 003435 322 SIGTLKHLRYLDLSHTYIR-----KIPGSISKLKHLQTLDLSNCYNLEE----LP-------KGICQLTNLRTLDISSCY 385 (820)
Q Consensus 322 ~~~~l~~L~~L~Ls~n~i~-----~lp~~~~~L~~L~~L~L~~n~~~~~----lp-------~~~~~l~~L~~L~L~~n~ 385 (820)
.+..+..++.++||+|.|. .+...+.+-.+|+..+++. -.++. +| .++-++++|+..+||.|.
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 3455788999999999987 3455677788999999987 44442 22 235679999999999998
Q ss_pred CccccCcc----cCCCCCCCccCceeeCCcc
Q 003435 386 SLTHMPLG----IGKLRPLRKLPAFILGKQR 412 (820)
Q Consensus 386 ~~~~~p~~----~~~l~~L~~L~~~~~~~~~ 412 (820)
+....|.. +++-+.|.+|.+.+++...
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCc
Confidence 77666654 4455666676666655443
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.18 E-value=0.0017 Score=57.37 Aligned_cols=122 Identities=13% Similarity=0.069 Sum_probs=50.4
Q ss_pred ccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcc
Q 003435 631 SLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSL 710 (820)
Q Consensus 631 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 710 (820)
.|.++++|+.+.+.. .+.......|.++++|+.+++.++ ....-...+..+++|+.+.+.+ .........|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 455666666666654 334444455666666777766653 3332233566666677776654 2222233355556666
Q ss_pred cEEEecCCCCCCccccccCCCCCccEEEeccCCCcccccccccCCCCc
Q 003435 711 QKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQL 758 (820)
Q Consensus 711 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 758 (820)
+.+++..+ +...-...|.+. +|+.+.+.+ .+.......|.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 66666554 333333445555 666666654 3333344455555544
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.14 E-value=0.0011 Score=58.65 Aligned_cols=122 Identities=12% Similarity=0.228 Sum_probs=63.6
Q ss_pred CCCcccCCCCccEEEeecccccccCcc-ccCCceeEEEEeCCCCCcccC-ccccCcccccEEeccCccccccc-cccccC
Q 003435 273 SSSTIPRARKLRTLLFLTVKMENLSFP-CQEFQCLRVLDLGQSGIIKLP-DSIGTLKHLRYLDLSHTYIRKIP-GSISKL 349 (820)
Q Consensus 273 ~~~~~~~~~~L~~L~l~~n~~~~l~~~-~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp-~~~~~L 349 (820)
+..+|..+++|+.+.+.. .+..++.. |..+++|+.+.+.++ +..++ ..|.+++.|+.+.+.+ .+..++ ..|..+
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 445677888888888764 57777776 888888888888774 66665 4577887888888865 566664 567778
Q ss_pred CcccEEeccCCCCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCC
Q 003435 350 KHLQTLDLSNCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPL 400 (820)
Q Consensus 350 ~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 400 (820)
++|+.+++..+ ....-...|.+. +|+.+.+..+ ....-...|.++++|
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~-~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN-ITKIEENAFKNCTKL 128 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TTB--SS----GGG-----
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECCC-ccEECCccccccccC
Confidence 88888888763 333333446666 8888887653 222223345554443
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.09 E-value=0.00023 Score=67.70 Aligned_cols=102 Identities=25% Similarity=0.293 Sum_probs=51.9
Q ss_pred CCCccEEEeecccccccCccccCCceeEEEEeCCC--CCc-ccCccccCcccccEEeccCcccccc--ccccccCCcccE
Q 003435 280 ARKLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQS--GII-KLPDSIGTLKHLRYLDLSHTYIRKI--PGSISKLKHLQT 354 (820)
Q Consensus 280 ~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n--~l~-~lp~~~~~l~~L~~L~Ls~n~i~~l--p~~~~~L~~L~~ 354 (820)
+..|..|.+.+..++.+ ..|..+++|+.|.++.| ++. .++--...+++|++|+|++|+|..+ -..+..+.+|..
T Consensus 42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 33444444444444443 22556666777777766 333 3333334446777777777766532 123555666666
Q ss_pred EeccCCCCccccc---hhccCCCCCcEEecC
Q 003435 355 LDLSNCYNLEELP---KGICQLTNLRTLDIS 382 (820)
Q Consensus 355 L~L~~n~~~~~lp---~~~~~l~~L~~L~L~ 382 (820)
|++.+|..+..-- ..|.-+++|++||-.
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 6666665443110 113445555555543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=3.4e-05 Score=73.19 Aligned_cols=99 Identities=20% Similarity=0.202 Sum_probs=44.3
Q ss_pred CceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEEeccCCCCccccch--hccCCCCCcEEe
Q 003435 303 FQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSNCYNLEELPK--GICQLTNLRTLD 380 (820)
Q Consensus 303 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~--~~~~l~~L~~L~ 380 (820)
+.+.+.|++-|+++..| ....+++.|++|.||-|.|+++.+ +..|++|+.|.|..|.+. .+.+ -+.++++|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHh
Confidence 33444444444444443 223444555555555555554421 444555555555543322 1111 134555555555
Q ss_pred cCCCCCccccCcc-----cCCCCCCCccC
Q 003435 381 ISSCYSLTHMPLG-----IGKLRPLRKLP 404 (820)
Q Consensus 381 L~~n~~~~~~p~~-----~~~l~~L~~L~ 404 (820)
|..|...+.-+.. +.-|++|+.|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 5555544443332 33445555543
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=5.1e-05 Score=72.03 Aligned_cols=100 Identities=24% Similarity=0.325 Sum_probs=83.6
Q ss_pred CCCCccEEEeecccccccCccccCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccccc--cccccCCcccEEe
Q 003435 279 RARKLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIP--GSISKLKHLQTLD 356 (820)
Q Consensus 279 ~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp--~~~~~L~~L~~L~ 356 (820)
.+.+.+.|++-++.+.+|. -+..|+.|++|.||-|+|+++ +.|..+++|+.|.|..|.|.++- .-+.++++|+.|=
T Consensus 17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 4567788889998888773 368899999999999999998 55889999999999999999884 5678999999999
Q ss_pred ccCCCCccccchh-----ccCCCCCcEEe
Q 003435 357 LSNCYNLEELPKG-----ICQLTNLRTLD 380 (820)
Q Consensus 357 L~~n~~~~~lp~~-----~~~l~~L~~L~ 380 (820)
|..|.-.+.-+.. +.-|++|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 9998766655542 56788998887
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.93 E-value=0.00035 Score=66.50 Aligned_cols=103 Identities=17% Similarity=0.122 Sum_probs=49.5
Q ss_pred CCCccEEEEccCCCccchhhhcCCCCCcceEeeccC--cccccCccccCCCCcccEEEecCCCCCC--ccccccCCCCCc
Q 003435 659 LNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHC--DKLESLPMSLEKFCSLQKLDIVECPRLV--HIPDIMGQHSSL 734 (820)
Q Consensus 659 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~~~l~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L 734 (820)
+..|+.|.+.++..+... .+..+++|++|.++.| ...+.++.....+++|++|++++|++.. .+ ..+..+.+|
T Consensus 42 ~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELENL 118 (260)
T ss_pred ccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhhcch
Confidence 344444444444333321 3445556666666666 3333344344445666666666665432 11 123445556
Q ss_pred cEEEeccCCCcccc---cccccCCCCcceEEEe
Q 003435 735 LELSIEGCPMLKLS---LKSIEFLGQLQRLVIK 764 (820)
Q Consensus 735 ~~L~l~~n~~~~~~---~~~~~~l~~L~~L~l~ 764 (820)
..|++.+|...... -..|.-+++|++|+-.
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 66666666544411 1234445666666543
No 71
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.73 E-value=0.018 Score=58.44 Aligned_cols=108 Identities=17% Similarity=0.163 Sum_probs=71.1
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhccC---CCCCcEEEEecCchHHHhhhC----------CCCeEeCCCCChHhHHH
Q 003435 10 RGRGFLIVLDDVWDEDGENMEKALSWLNV---GGSGSCVLVTTRSGRVASMMG----------TVPTQHLTCLSSEDSWV 76 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~~~~~~~~~~~~~~---~~~gs~iiiTtr~~~~~~~~~----------~~~~~~l~~l~~~~a~~ 76 (820)
.+++++||+||+|.-..+.++.+...... .+....|++|... ....... ....+++++++.+|..+
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~ 199 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDREETRE 199 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHH
Confidence 67889999999988766667766533221 1223345666543 2221111 12368899999999999
Q ss_pred HHHHHhcCCCCC-CChhHHHHHHHHHHHhcCChHHHHHHHHhh
Q 003435 77 LFKHFAFGSVED-ESTELEEIGQKIVAKCKGLPIAIKTIGSIL 118 (820)
Q Consensus 77 Lf~~~~~~~~~~-~~~~~~~~~~~i~~~c~glPlal~~~~~~l 118 (820)
++...+...... ...--.+..+.|++.++|.|..+..++..+
T Consensus 200 ~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 200 YIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 998765322111 111234688999999999999999998776
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.65 E-value=0.00082 Score=37.81 Aligned_cols=20 Identities=50% Similarity=0.762 Sum_probs=10.6
Q ss_pred ccEEeccCcccccccccccc
Q 003435 329 LRYLDLSHTYIRKIPGSISK 348 (820)
Q Consensus 329 L~~L~Ls~n~i~~lp~~~~~ 348 (820)
|++|||++|.|+.+|..|++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 55555555555555544443
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.64 E-value=0.00019 Score=80.40 Aligned_cols=59 Identities=25% Similarity=0.434 Sum_probs=31.1
Q ss_pred CCCcceEEccCCCC-Cc-cccccCCCCCCccEEEEccCCCccc--hhhhcCCCCCcceEeecc
Q 003435 635 FPSLSSLVVDNFPE-LN-CLSDKTGNLNSLVKLTVNECDNLES--LFVFMQSFSSLRHLSILH 693 (820)
Q Consensus 635 l~~L~~L~l~~n~~-~~-~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~l~~ 693 (820)
+++|+.|.+.+|.. +. .+......+++|++|++++|..... +......+++|+.|.+..
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 66777777666652 22 2222344566677777777766422 222333455555544433
No 74
>PRK06893 DNA replication initiation factor; Validated
Probab=96.16 E-value=0.026 Score=55.41 Aligned_cols=102 Identities=17% Similarity=0.136 Sum_probs=66.4
Q ss_pred EEEEEeCCCCCC-hhhHHH-HHhhccCC-CCCcEEEEe-cCc---------hHHHhhhCCCCeEeCCCCChHhHHHHHHH
Q 003435 14 FLIVLDDVWDED-GENMEK-ALSWLNVG-GSGSCVLVT-TRS---------GRVASMMGTVPTQHLTCLSSEDSWVLFKH 80 (820)
Q Consensus 14 ~llvlDdv~~~~-~~~~~~-~~~~~~~~-~~gs~iiiT-tr~---------~~~~~~~~~~~~~~l~~l~~~~a~~Lf~~ 80 (820)
-+|||||+|... ...|+. +...+... ..|..|||| ++. +.+...++....+++++++.++.++++++
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 489999998742 245654 22223221 246666554 443 46777777667999999999999999999
Q ss_pred HhcCCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhh
Q 003435 81 FAFGSVEDESTELEEIGQKIVAKCKGLPIAIKTIGSIL 118 (820)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l 118 (820)
.+....- .--+++..-+++++.|-.-++..+-..|
T Consensus 173 ~a~~~~l---~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 173 NAYQRGI---ELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 8864422 2234567888888887765555444333
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.01 E-value=0.0027 Score=35.70 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=16.8
Q ss_pred eeEEEEeCCCCCcccCccccCc
Q 003435 305 CLRVLDLGQSGIIKLPDSIGTL 326 (820)
Q Consensus 305 ~L~~L~L~~n~l~~lp~~~~~l 326 (820)
+|++|||++|+++.+|+.|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4788888888888888777653
No 76
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.00 E-value=0.66 Score=50.10 Aligned_cols=222 Identities=12% Similarity=0.072 Sum_probs=121.2
Q ss_pred HHHHHHcC--CceEEEEEeCCCCCC----hhhHHHHHhhccCCCCCcE--EEEecCchHHHhhhC-------CCCeEeCC
Q 003435 3 WKLEVYWR--GRGFLIVLDDVWDED----GENMEKALSWLNVGGSGSC--VLVTTRSGRVASMMG-------TVPTQHLT 67 (820)
Q Consensus 3 ~~l~~~l~--~~~~llvlDdv~~~~----~~~~~~~~~~~~~~~~gs~--iiiTtr~~~~~~~~~-------~~~~~~l~ 67 (820)
+.+.+.++ ++.++||||+++.-. .+.+..+...+.. .++++ ||.++.+..+..... ....+.++
T Consensus 127 ~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~ 205 (394)
T PRK00411 127 DKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFP 205 (394)
T ss_pred HHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecC
Confidence 34555554 456899999997522 2334444443332 23444 677776654333211 11368999
Q ss_pred CCChHhHHHHHHHHhcCC---CCCCChhHHHHHHHHHHHhcCChHHHHHHHHhh-----ccCC---HHHHHHhhhcchhc
Q 003435 68 CLSSEDSWVLFKHFAFGS---VEDESTELEEIGQKIVAKCKGLPIAIKTIGSIL-----RSKD---KEEWLSVADCDLWT 136 (820)
Q Consensus 68 ~l~~~~a~~Lf~~~~~~~---~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l-----~~k~---~~~w~~~~~~~~~~ 136 (820)
+++.++..+.+...+-.+ ..-....++.+++.+....|..+.|+.++-.+. +++. .+.++.+....
T Consensus 206 py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~--- 282 (394)
T PRK00411 206 PYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS--- 282 (394)
T ss_pred CCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH---
Confidence 999999999998775221 112223333444444443566888887765432 1121 34444443321
Q ss_pred hhccCcchhhHHHhhhcCCChhHHHHHhhhcCCCC--CcccCHHHHHHHH--HHc--CCcccCCCCCcHHHHHHHHHHHH
Q 003435 137 LLEFKSHVLPVLKRSYDNLPWHLKQCFAYCSIFPK--DYWINKEKLVRLW--VAE--GFIRLDSGSEDLEETADDYFMEL 210 (820)
Q Consensus 137 ~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~--~~~i~~~~li~~w--~~~--gl~~~~~~~~~~~~~~~~~l~~L 210 (820)
-.....-.+..|+..+|..+..++...+ ...+...++.... +.+ |.-.. -+....+++..|
T Consensus 283 -------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~------~~~~~~~~l~~L 349 (394)
T PRK00411 283 -------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPR------THTRFYEYINKL 349 (394)
T ss_pred -------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcC------cHHHHHHHHHHH
Confidence 1123345678899998888776664432 1345666665432 221 22110 134456789999
Q ss_pred hhccccccc--ccccCCcEEEEEecchHHHHHH
Q 003435 211 LQHSFFDNI--VRGIFGEVVMCKVHDYIHFLAQ 241 (820)
Q Consensus 211 ~~~~li~~~--~~~~~~~~~~~~~h~~v~~~~~ 241 (820)
...+++... ..+..|+.+.++.......+..
T Consensus 350 ~~~glI~~~~~~~g~~g~~~~~~~~~~~~~~~~ 382 (394)
T PRK00411 350 DMLGIINTRYSGKGGRGRTRLISLSYDPEDVLE 382 (394)
T ss_pred HhcCCeEEEEecCCCCCCeEEEEecCCHHHHHH
Confidence 999998753 3344566666665554444443
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.96 E-value=0.00024 Score=65.82 Aligned_cols=87 Identities=17% Similarity=0.119 Sum_probs=60.4
Q ss_pred cccCCCCccEEEeecccccccCccccCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEE
Q 003435 276 TIPRARKLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTL 355 (820)
Q Consensus 276 ~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L 355 (820)
.+..+.+.+.|+++.|.+-.+...|+.++.+..|+++.|.+..+|.+++.+..++.+++..|..+..|.+++.+++++++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 34556666777777776666666667777777777777777777777777777777777777777777777777777777
Q ss_pred eccCCCC
Q 003435 356 DLSNCYN 362 (820)
Q Consensus 356 ~L~~n~~ 362 (820)
++.++.+
T Consensus 117 e~k~~~~ 123 (326)
T KOG0473|consen 117 EQKKTEF 123 (326)
T ss_pred hhccCcc
Confidence 7766543
No 78
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.84 E-value=0.11 Score=54.26 Aligned_cols=155 Identities=18% Similarity=0.145 Sum_probs=86.2
Q ss_pred CcEEEEecCchHHHh----hhCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHh
Q 003435 42 GSCVLVTTRSGRVAS----MMGTVPTQHLTCLSSEDSWVLFKHFAFGSVEDESTELEEIGQKIVAKCKGLPIAIKTIGSI 117 (820)
Q Consensus 42 gs~iiiTtr~~~~~~----~~~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~ 117 (820)
.+-|..|||...+.. .++ ..+++++++.++..+++.+.+...... --.+.+..|++.|+|.|-.+..+...
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~--~~~~l~~~~~~e~~~il~~~~~~~~~~---~~~~~~~~ia~~~~G~pR~a~~~l~~ 225 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFG--IVQRLEFYTVEELEKIVKRSARILGVE---IDEEGALEIARRSRGTPRIANRLLRR 225 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcC--eeeecCCCCHHHHHHHHHHHHHHcCCC---cCHHHHHHHHHHcCCCchHHHHHHHH
Confidence 344556777543322 232 368999999999999999877543222 23456899999999999544444432
Q ss_pred hccCCHHHHHHhhhcchhchhc-cCcchhhHHHhhhcCCChhHHHHHh-hhcCCCCCcccCHHHHHHHHHHcCCcccCCC
Q 003435 118 LRSKDKEEWLSVADCDLWTLLE-FKSHVLPVLKRSYDNLPWHLKQCFA-YCSIFPKDYWINKEKLVRLWVAEGFIRLDSG 195 (820)
Q Consensus 118 l~~k~~~~w~~~~~~~~~~~~~-~~~~i~~~l~~sy~~L~~~~k~~fl-~~a~f~~~~~i~~~~li~~w~~~gl~~~~~~ 195 (820)
+ ..|...... ...+. ........+...|..|++..+..+. ....|..+. +..+.+-..+ .. +
T Consensus 226 ~-----~~~a~~~~~--~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~-~~~~~~a~~l------g~--~ 289 (328)
T PRK00080 226 V-----RDFAQVKGD--GVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGP-VGLDTLAAAL------GE--E 289 (328)
T ss_pred H-----HHHHHHcCC--CCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCc-eeHHHHHHHH------CC--C
Confidence 2 122111100 00100 0123445667788889988888775 555565543 3443332111 11 1
Q ss_pred CCcHHHHHHHHHH-HHhhccccccccc
Q 003435 196 SEDLEETADDYFM-ELLQHSFFDNIVR 221 (820)
Q Consensus 196 ~~~~~~~~~~~l~-~L~~~~li~~~~~ 221 (820)
.+.+++.++ .|++.+++.....
T Consensus 290 ----~~~~~~~~e~~Li~~~li~~~~~ 312 (328)
T PRK00080 290 ----RDTIEDVYEPYLIQQGFIQRTPR 312 (328)
T ss_pred ----cchHHHHhhHHHHHcCCcccCCc
Confidence 123343444 6888888865443
No 79
>PF05729 NACHT: NACHT domain
Probab=95.79 E-value=0.027 Score=52.21 Aligned_cols=72 Identities=17% Similarity=0.258 Sum_probs=49.9
Q ss_pred CCceEEEEEeCCCCCCh--h-----hHHHHH-hhccC-CCCCcEEEEecCchHH---HhhhCCCCeEeCCCCChHhHHHH
Q 003435 10 RGRGFLIVLDDVWDEDG--E-----NMEKAL-SWLNV-GGSGSCVLVTTRSGRV---ASMMGTVPTQHLTCLSSEDSWVL 77 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~~--~-----~~~~~~-~~~~~-~~~gs~iiiTtr~~~~---~~~~~~~~~~~l~~l~~~~a~~L 77 (820)
+.++++||+|+++.... . .+.... ..+.. ..++.+||||||.... .........++++++++++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 67899999999966322 1 122322 23332 2478999999999766 33334445899999999999999
Q ss_pred HHHH
Q 003435 78 FKHF 81 (820)
Q Consensus 78 f~~~ 81 (820)
+.+.
T Consensus 159 ~~~~ 162 (166)
T PF05729_consen 159 LRKY 162 (166)
T ss_pred HHHH
Confidence 8664
No 80
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.62 E-value=0.053 Score=53.63 Aligned_cols=101 Identities=18% Similarity=0.186 Sum_probs=54.3
Q ss_pred CceEEEEEeCCCCCC------hhhHHHHHhhccC--CCCCcEEEEecCchHHHhh--------hCCCCeEeCCCCChHhH
Q 003435 11 GRGFLIVLDDVWDED------GENMEKALSWLNV--GGSGSCVLVTTRSGRVASM--------MGTVPTQHLTCLSSEDS 74 (820)
Q Consensus 11 ~~~~llvlDdv~~~~------~~~~~~~~~~~~~--~~~gs~iiiTtr~~~~~~~--------~~~~~~~~l~~l~~~~a 74 (820)
+++++||+||+..-. ..-...+...+.. ....-.+|+++....+... .+....+.+++++.+++
T Consensus 117 ~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~ 196 (234)
T PF01637_consen 117 GKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEA 196 (234)
T ss_dssp HCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHH
T ss_pred CCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHH
Confidence 345999999996532 1112233333332 2234445555555544443 22334699999999999
Q ss_pred HHHHHHHhcCCCCCCChhHHHHHHHHHHHhcCChHHHHH
Q 003435 75 WVLFKHFAFGSVEDESTELEEIGQKIVAKCKGLPIAIKT 113 (820)
Q Consensus 75 ~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~ 113 (820)
++++...+-.. ... +.-.+..++|...+||.|..|.-
T Consensus 197 ~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 197 REFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp HHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 99998865322 111 22345569999999999988764
No 81
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.41 E-value=0.2 Score=51.97 Aligned_cols=155 Identities=17% Similarity=0.059 Sum_probs=86.1
Q ss_pred CcEEEEecCchHHHh----hhCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHh
Q 003435 42 GSCVLVTTRSGRVAS----MMGTVPTQHLTCLSSEDSWVLFKHFAFGSVEDESTELEEIGQKIVAKCKGLPIAIKTIGSI 117 (820)
Q Consensus 42 gs~iiiTtr~~~~~~----~~~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~ 117 (820)
.+-|..|||...+.. .+ ...+++++++.+|..+++.+.+...... --.+.+..+++.|+|.|-.+..++..
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~--~~~~~l~~l~~~e~~~il~~~~~~~~~~---~~~~al~~ia~~~~G~pR~~~~ll~~ 204 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRF--GIILRLEFYTVEELAEIVSRSAGLLNVE---IEPEAALEIARRSRGTPRIANRLLRR 204 (305)
T ss_pred eEEEEecCCccccCHHHHhhc--ceEEEeCCCCHHHHHHHHHHHHHHhCCC---cCHHHHHHHHHHhCCCcchHHHHHHH
Confidence 444556777643332 23 2368999999999999999877533222 12456788999999999666555543
Q ss_pred hccCCHHHHHHhhhcchhchh-ccCcchhhHHHhhhcCCChhHHHHHh-hhcCCCCCcccCHHHHHHHHHHcCCcccCCC
Q 003435 118 LRSKDKEEWLSVADCDLWTLL-EFKSHVLPVLKRSYDNLPWHLKQCFA-YCSIFPKDYWINKEKLVRLWVAEGFIRLDSG 195 (820)
Q Consensus 118 l~~k~~~~w~~~~~~~~~~~~-~~~~~i~~~l~~sy~~L~~~~k~~fl-~~a~f~~~~~i~~~~li~~w~~~gl~~~~~~ 195 (820)
+ |..+......... +....+...+..+|.++++..+..+. ..+.+..+ .+..+++-... |.
T Consensus 205 ~-------~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~------ 267 (305)
T TIGR00635 205 V-------RDFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE------ 267 (305)
T ss_pred H-------HHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC------
Confidence 2 2211100000000 01112333467778889998888776 43555433 33332222211 11
Q ss_pred CCcHHHHHHHHHH-HHhhccccccccc
Q 003435 196 SEDLEETADDYFM-ELLQHSFFDNIVR 221 (820)
Q Consensus 196 ~~~~~~~~~~~l~-~L~~~~li~~~~~ 221 (820)
....++..++ .|++++++.....
T Consensus 268 ---~~~~~~~~~e~~Li~~~li~~~~~ 291 (305)
T TIGR00635 268 ---DADTIEDVYEPYLLQIGFLQRTPR 291 (305)
T ss_pred ---CcchHHHhhhHHHHHcCCcccCCc
Confidence 1234555566 5999999864433
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.27 E-value=0.00096 Score=61.92 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=80.2
Q ss_pred cccCcc-ccCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEEeccCCCCccccchhccC
Q 003435 294 ENLSFP-CQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSNCYNLEELPKGICQ 372 (820)
Q Consensus 294 ~~l~~~-~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~ 372 (820)
..+|.. +..++..++||++.|++..+-..|+-++.|..||++.|.|..+|..++.+..++.+++.+|+ ....|.+++.
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k 109 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKK 109 (326)
T ss_pred cccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccc
Confidence 344433 67788999999999999988788899999999999999999999999999999999998854 6778889999
Q ss_pred CCCCcEEecCCCCCc
Q 003435 373 LTNLRTLDISSCYSL 387 (820)
Q Consensus 373 l~~L~~L~L~~n~~~ 387 (820)
.+.++++++-+|.+.
T Consensus 110 ~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEFF 124 (326)
T ss_pred cCCcchhhhccCcch
Confidence 999999999888643
No 83
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.24 E-value=0.011 Score=30.73 Aligned_cols=16 Identities=44% Similarity=0.748 Sum_probs=6.6
Q ss_pred cccEEeccCccccccc
Q 003435 328 HLRYLDLSHTYIRKIP 343 (820)
Q Consensus 328 ~L~~L~Ls~n~i~~lp 343 (820)
+|+.|+|++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555544
No 84
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.08 E-value=0.0062 Score=68.12 Aligned_cols=130 Identities=18% Similarity=0.249 Sum_probs=78.7
Q ss_pred CCCCcceEEccCCCCCcc--ccccCCCCCCccEEEEccC-CCccchh----hhcCCCCCcceEeeccCcccc-cCccccC
Q 003435 634 RFPSLSSLVVDNFPELNC--LSDKTGNLNSLVKLTVNEC-DNLESLF----VFMQSFSSLRHLSILHCDKLE-SLPMSLE 705 (820)
Q Consensus 634 ~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n-~~~~~~~----~~~~~l~~L~~L~l~~n~~~~-~~~~~l~ 705 (820)
.++.|+.|.+..+..... .......++.|+.|++++| ......+ .....+++|+.|+++++...+ ..-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 478888888888866554 3445667888888888873 2222222 244566788888888887433 2222222
Q ss_pred -CCCcccEEEecCCCC-CC-ccccccCCCCCccEEEeccCCCccc--ccccccCCCCcceEEE
Q 003435 706 -KFCSLQKLDIVECPR-LV-HIPDIMGQHSSLLELSIEGCPMLKL--SLKSIEFLGQLQRLVI 763 (820)
Q Consensus 706 -~l~~L~~L~L~~n~~-~~-~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l 763 (820)
.+++|++|.+.+|.. +. .+-.....+++|++|++++|...+. +.....++++|+.|.+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 377888888777763 22 1223345577788888888876531 2222344555555443
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.94 E-value=0.0071 Score=55.38 Aligned_cols=81 Identities=10% Similarity=0.135 Sum_probs=36.7
Q ss_pred ccEEEeccCCCcccccccccCCCCcceEEEeCCchhhHHHhccccCCCcccccCCceeEecCceeeeccCCCcccccchh
Q 003435 734 LLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDPIAQMEVVSMTTLNLMADEVPTETDAGASL 813 (820)
Q Consensus 734 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~l~l~~~n~~~~~~~~~~~~~~~L 813 (820)
++.+|.+++.+...-.+-+.++++++.|.+.+|..+. +.+-.-... ..++|+.|+|++|..++..--..+..+++|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~d-D~~L~~l~~---~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFD-DWCLERLGG---LAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchh-hHHHHHhcc---cccchheeeccCCCeechhHHHHHHHhhhh
Confidence 4455555555444444444455555555555555554 222211111 234455555555555544333334444444
Q ss_pred hhhhc
Q 003435 814 REKNK 818 (820)
Q Consensus 814 ~~L~L 818 (820)
+.|.+
T Consensus 179 r~L~l 183 (221)
T KOG3864|consen 179 RRLHL 183 (221)
T ss_pred HHHHh
Confidence 44443
No 86
>COG3903 Predicted ATPase [General function prediction only]
Probab=94.50 E-value=0.025 Score=58.04 Aligned_cols=167 Identities=18% Similarity=0.117 Sum_probs=117.6
Q ss_pred HHHHHHcCCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchHHHhhhCCCCeEeCCCCCh-HhHHHHHHHH
Q 003435 3 WKLEVYWRGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGRVASMMGTVPTQHLTCLSS-EDSWVLFKHF 81 (820)
Q Consensus 3 ~~l~~~l~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~~~~~~~~~~~~~l~~l~~-~~a~~Lf~~~ 81 (820)
+.+......+|.++|+||..+- .++-......+..+.+.-+|+.|+|+..... .+..+.++++.. ++|.++|...
T Consensus 79 ~~~~~~~~~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~~---ge~~~~~~~L~~~d~a~~lf~~r 154 (414)
T COG3903 79 DTLVRRIGDRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILVA---GEVHRRVPSLSLFDEAIELFVCR 154 (414)
T ss_pred HHHHHHHhhhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhccc---ccccccCCccccCCchhHHHHHH
Confidence 3566778899999999999432 2444555556666777788999998865443 344677777776 4899999877
Q ss_pred hcCCCC--CCChhHHHHHHHHHHHhcCChHHHHHHHHhhccCCHHHHHHhhhcchhchhccC-------cchhhHHHhhh
Q 003435 82 AFGSVE--DESTELEEIGQKIVAKCKGLPIAIKTIGSILRSKDKEEWLSVADCDLWTLLEFK-------SHVLPVLKRSY 152 (820)
Q Consensus 82 ~~~~~~--~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~k~~~~w~~~~~~~~~~~~~~~-------~~i~~~l~~sy 152 (820)
+..... .-...-.....+|.++.+|.|+||...++..+.-...+-...+......+.... ...+..+..||
T Consensus 155 a~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~ 234 (414)
T COG3903 155 AVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSY 234 (414)
T ss_pred HHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhh
Confidence 633221 112334567889999999999999999999887775555554444333333221 24567899999
Q ss_pred cCCChhHHHHHhhhcCCCCCc
Q 003435 153 DNLPWHLKQCFAYCSIFPKDY 173 (820)
Q Consensus 153 ~~L~~~~k~~fl~~a~f~~~~ 173 (820)
.-|....+-.|-.++.|...+
T Consensus 235 ~lLtgwe~~~~~rLa~~~g~f 255 (414)
T COG3903 235 ALLTGWERALFGRLAVFVGGF 255 (414)
T ss_pred HhhhhHHHHHhcchhhhhhhh
Confidence 999999999998888886654
No 87
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.29 E-value=0.49 Score=53.49 Aligned_cols=201 Identities=16% Similarity=0.160 Sum_probs=121.3
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCC-CCCcEEEEecCchHHHhh---hCCCCeEeCC----CCChHhHHHHHHHHh
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVG-GSGSCVLVTTRSGRVASM---MGTVPTQHLT----CLSSEDSWVLFKHFA 82 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~-~~gs~iiiTtr~~~~~~~---~~~~~~~~l~----~l~~~~a~~Lf~~~~ 82 (820)
.+...+||||---........-...+.++ .++-..|||||..--+.. .-.....+++ .++.+|+-++|....
T Consensus 128 ~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~ 207 (894)
T COG2909 128 EGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG 207 (894)
T ss_pred cCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC
Confidence 34789999997443333444433344333 358889999999543321 1111234444 688999999998765
Q ss_pred cCCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhccCC-HHHHHHhhhcchhchhccCcchhh-HHHhhhcCCChhHH
Q 003435 83 FGSVEDESTELEEIGQKIVAKCKGLPIAIKTIGSILRSKD-KEEWLSVADCDLWTLLEFKSHVLP-VLKRSYDNLPWHLK 160 (820)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~k~-~~~w~~~~~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~k 160 (820)
...- ...-+..+.+...|=+-|+..++=++++.. .+.--..+.. .++.+.+ ..+--+|.||++.|
T Consensus 208 ~l~L------d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG-------~~~~l~dYL~eeVld~Lp~~l~ 274 (894)
T COG2909 208 SLPL------DAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSG-------AASHLSDYLVEEVLDRLPPELR 274 (894)
T ss_pred CCCC------ChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccc-------hHHHHHHHHHHHHHhcCCHHHH
Confidence 2221 123367788888999999999988887333 2222222221 1112222 23445788999999
Q ss_pred HHHhhhcCCCCCcccCHHHHHHHHHHcCCcccCCCCCcHHHHHHHHHHHHhhcccccccccccCCcEEEEEecchHHHHH
Q 003435 161 QCFAYCSIFPKDYWINKEKLVRLWVAEGFIRLDSGSEDLEETADDYFMELLQHSFFDNIVRGIFGEVVMCKVHDYIHFLA 240 (820)
Q Consensus 161 ~~fl~~a~f~~~~~i~~~~li~~w~~~gl~~~~~~~~~~~~~~~~~l~~L~~~~li~~~~~~~~~~~~~~~~h~~v~~~~ 240 (820)
..++-+|+++.-. ++|.....+ ++.+..++++|.+++++-..-.+. ..+++.|.+..+|.
T Consensus 275 ~FLl~~svl~~f~----~eL~~~Ltg-------------~~ng~amLe~L~~~gLFl~~Ldd~---~~WfryH~LFaeFL 334 (894)
T COG2909 275 DFLLQTSVLSRFN----DELCNALTG-------------EENGQAMLEELERRGLFLQRLDDE---GQWFRYHHLFAEFL 334 (894)
T ss_pred HHHHHHHhHHHhh----HHHHHHHhc-------------CCcHHHHHHHHHhCCCceeeecCC---CceeehhHHHHHHH
Confidence 9999999875432 223222211 234778899999999874222111 14588999998887
Q ss_pred HHhh
Q 003435 241 QLAA 244 (820)
Q Consensus 241 ~~~~ 244 (820)
+.--
T Consensus 335 ~~r~ 338 (894)
T COG2909 335 RQRL 338 (894)
T ss_pred Hhhh
Confidence 6433
No 88
>PF13173 AAA_14: AAA domain
Probab=93.71 E-value=0.17 Score=44.45 Aligned_cols=67 Identities=22% Similarity=0.184 Sum_probs=47.6
Q ss_pred HHHHcCCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchHHHhhh------CCCCeEeCCCCChHh
Q 003435 5 LEVYWRGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGRVASMM------GTVPTQHLTCLSSED 73 (820)
Q Consensus 5 l~~~l~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~~~~~~------~~~~~~~l~~l~~~~ 73 (820)
+.+....++.+|+||+|.. ..+|......+.+.++..+||+|+........- |....+++.||+..|
T Consensus 54 ~~~~~~~~~~~i~iDEiq~--~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 54 FLELIKPGKKYIFIDEIQY--LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred HHHhhccCCcEEEEehhhh--hccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 3344445788999999954 357777777776666678999999987776431 122378999998876
No 89
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=93.52 E-value=0.56 Score=49.39 Aligned_cols=98 Identities=12% Similarity=0.076 Sum_probs=67.1
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchHHH-hhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGRVA-SMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~~~-~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
+++-++|+|++...+......+...+.....++.+|++|.+.+.. ... .....+.+.+++.++..+++.......
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~--- 216 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL--- 216 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC---
Confidence 556789999998877777788877775544567777777665432 211 112389999999999999998754211
Q ss_pred CChhHHHHHHHHHHHhcCChHHHHHHH
Q 003435 89 ESTELEEIGQKIVAKCKGLPIAIKTIG 115 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glPlal~~~~ 115 (820)
+ .+....+++.++|.|.....+.
T Consensus 217 --~--~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 217 --P--DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred --C--HHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1122678999999998655543
No 90
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.37 E-value=0.038 Score=28.69 Aligned_cols=16 Identities=44% Similarity=0.719 Sum_probs=8.2
Q ss_pred eeEEEEeCCCCCcccC
Q 003435 305 CLRVLDLGQSGIIKLP 320 (820)
Q Consensus 305 ~L~~L~L~~n~l~~lp 320 (820)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5677777777766654
No 91
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.27 E-value=1 Score=44.19 Aligned_cols=101 Identities=16% Similarity=0.121 Sum_probs=60.9
Q ss_pred EEEEEeCCCCCChh-hHH-HHHhhccC-CCCCcEEEEecCch---------HHHhhhCCCCeEeCCCCChHhHHHHHHHH
Q 003435 14 FLIVLDDVWDEDGE-NME-KALSWLNV-GGSGSCVLVTTRSG---------RVASMMGTVPTQHLTCLSSEDSWVLFKHF 81 (820)
Q Consensus 14 ~llvlDdv~~~~~~-~~~-~~~~~~~~-~~~gs~iiiTtr~~---------~~~~~~~~~~~~~l~~l~~~~a~~Lf~~~ 81 (820)
-+|||||++.-... .|. .+...+.. ...+.+||+||+.. .+...+.....++++++++++...++...
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~ 171 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSR 171 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHH
Confidence 38999999653321 333 34333322 12345799988742 23333333357999999999999998775
Q ss_pred hcCCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHh
Q 003435 82 AFGSVEDESTELEEIGQKIVAKCKGLPIAIKTIGSI 117 (820)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~ 117 (820)
+-+..-. --.+..+.+++.+.|.|-.+.-+-..
T Consensus 172 ~~~~~~~---~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 172 AARRGLQ---LPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HHHcCCC---CCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 4222111 12345677788899988777666433
No 92
>PRK09087 hypothetical protein; Validated
Probab=91.95 E-value=1.7 Score=42.47 Aligned_cols=97 Identities=11% Similarity=0.047 Sum_probs=63.5
Q ss_pred EEEEEeCCCCC--ChhhHHHHHhhccCCCCCcEEEEecCc---------hHHHhhhCCCCeEeCCCCChHhHHHHHHHHh
Q 003435 14 FLIVLDDVWDE--DGENMEKALSWLNVGGSGSCVLVTTRS---------GRVASMMGTVPTQHLTCLSSEDSWVLFKHFA 82 (820)
Q Consensus 14 ~llvlDdv~~~--~~~~~~~~~~~~~~~~~gs~iiiTtr~---------~~~~~~~~~~~~~~l~~l~~~~a~~Lf~~~~ 82 (820)
-+|++||+... +++.+-.+..... ..|..||+|++. +.+...+.+...+++++++.++-.+++.+++
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 37888999542 2333444433333 346779999873 4455556666699999999999999998877
Q ss_pred cCCCCCCChhHHHHHHHHHHHhcCChHHHHHHH
Q 003435 83 FGSVEDESTELEEIGQKIVAKCKGLPIAIKTIG 115 (820)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~ 115 (820)
-...- .--+++..-+++++.|-.-++..+-
T Consensus 167 ~~~~~---~l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 167 ADRQL---YVDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHcCC---CCCHHHHHHHHHHhhhhHHHHHHHH
Confidence 43211 1224567788888888776666433
No 93
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.73 E-value=0.12 Score=30.44 Aligned_cols=19 Identities=42% Similarity=0.649 Sum_probs=12.4
Q ss_pred cccccEEeccCcccccccc
Q 003435 326 LKHLRYLDLSHTYIRKIPG 344 (820)
Q Consensus 326 l~~L~~L~Ls~n~i~~lp~ 344 (820)
+++|++|+|++|.|+.+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 3566777777777776654
No 94
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.73 E-value=0.12 Score=30.44 Aligned_cols=19 Identities=42% Similarity=0.649 Sum_probs=12.4
Q ss_pred cccccEEeccCcccccccc
Q 003435 326 LKHLRYLDLSHTYIRKIPG 344 (820)
Q Consensus 326 l~~L~~L~Ls~n~i~~lp~ 344 (820)
+++|++|+|++|.|+.+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 3566777777777776654
No 95
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=90.33 E-value=1.3 Score=41.94 Aligned_cols=91 Identities=15% Similarity=0.160 Sum_probs=63.4
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCch-HHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCC
Q 003435 10 RGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSG-RVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVE 87 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~-~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~ 87 (820)
.+.+-++|+|++..-..+.++.+...+....+.+.+|++|++. .+.... ..-..+++.+++.++..+.+.+. +.
T Consensus 94 ~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~---gi- 169 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ---GI- 169 (188)
T ss_pred cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc---CC-
Confidence 3556689999997765666777887776655677788777653 222211 11138999999999988888775 11
Q ss_pred CCChhHHHHHHHHHHHhcCChH
Q 003435 88 DESTELEEIGQKIVAKCKGLPI 109 (820)
Q Consensus 88 ~~~~~~~~~~~~i~~~c~glPl 109 (820)
. .+.+..+++.++|-|.
T Consensus 170 --~---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 --S---EEAAELLLALAGGSPG 186 (188)
T ss_pred --C---HHHHHHHHHHcCCCcc
Confidence 1 3568899999999874
No 96
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=90.19 E-value=28 Score=36.98 Aligned_cols=202 Identities=12% Similarity=0.014 Sum_probs=105.4
Q ss_pred HHHHHc--CCceEEEEEeCCCCCC---hhhHHHHHhhccC-CC--CCcEEEEecCchHHHh--------hhCCCCeEeCC
Q 003435 4 KLEVYW--RGRGFLIVLDDVWDED---GENMEKALSWLNV-GG--SGSCVLVTTRSGRVAS--------MMGTVPTQHLT 67 (820)
Q Consensus 4 ~l~~~l--~~~~~llvlDdv~~~~---~~~~~~~~~~~~~-~~--~gs~iiiTtr~~~~~~--------~~~~~~~~~l~ 67 (820)
++.+.+ .+++++||||+++.-. .+....+..+... .. ..-.+|++|.+..... .+. ...++++
T Consensus 119 ~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~-~~~i~f~ 197 (365)
T TIGR02928 119 RLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLC-EEEIIFP 197 (365)
T ss_pred HHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCC-cceeeeC
Confidence 344455 3567899999997641 1223333322111 11 2334556665443222 111 1368999
Q ss_pred CCChHhHHHHHHHHhcC--CCCCCChhHHHHHHHHHHHhcCCh-HHHHHHHHhh-----ccCC---HHHHHHhhhcchhc
Q 003435 68 CLSSEDSWVLFKHFAFG--SVEDESTELEEIGQKIVAKCKGLP-IAIKTIGSIL-----RSKD---KEEWLSVADCDLWT 136 (820)
Q Consensus 68 ~l~~~~a~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~glP-lal~~~~~~l-----~~k~---~~~w~~~~~~~~~~ 136 (820)
+.+.+|..+.+..++-. ......++..+...+++....|-| .|+.++-.+. +++. .+..+.+....
T Consensus 198 p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~--- 274 (365)
T TIGR02928 198 PYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI--- 274 (365)
T ss_pred CCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH---
Confidence 99999999999887631 111223344445555666777877 4444433222 1111 33333333211
Q ss_pred hhccCcchhhHHHhhhcCCChhHHHHHhhhcCCC--CCcccCHHHHHHHHH-HcCCcccCCCCCcHHHHHHHHHHHHhhc
Q 003435 137 LLEFKSHVLPVLKRSYDNLPWHLKQCFAYCSIFP--KDYWINKEKLVRLWV-AEGFIRLDSGSEDLEETADDYFMELLQH 213 (820)
Q Consensus 137 ~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~--~~~~i~~~~li~~w~-~~gl~~~~~~~~~~~~~~~~~l~~L~~~ 213 (820)
-.....-+...|+...|.++..++..- .+..+...++...+. ...-+... ...+....+++..|...
T Consensus 275 -------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~---~~~~~~~~~~l~~l~~~ 344 (365)
T TIGR02928 275 -------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIGVD---PLTQRRISDLLNELDML 344 (365)
T ss_pred -------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCC---CCcHHHHHHHHHHHHhc
Confidence 112334456788888887766655321 334466666665332 11111111 11245677788999999
Q ss_pred cccccc
Q 003435 214 SFFDNI 219 (820)
Q Consensus 214 ~li~~~ 219 (820)
+++...
T Consensus 345 gli~~~ 350 (365)
T TIGR02928 345 GLVEAE 350 (365)
T ss_pred CCeEEE
Confidence 999764
No 97
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.16 E-value=0.054 Score=49.80 Aligned_cols=40 Identities=30% Similarity=0.512 Sum_probs=21.3
Q ss_pred CCCccEEEeccCCCccc-ccccccCCCCcceEEEeCCchhh
Q 003435 731 HSSLLELSIEGCPMLKL-SLKSIEFLGQLQRLVIKKCPQLE 770 (820)
Q Consensus 731 l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~~~~L~ 770 (820)
.++|+.|+|++|+-++. -...+..+++|+.|.+.+.+...
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 35666666666654332 22344455666666666554443
No 98
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=88.95 E-value=2.4 Score=42.12 Aligned_cols=97 Identities=13% Similarity=0.030 Sum_probs=66.4
Q ss_pred EEEEEeCCCCCChhhHHHHHhhccCCCCCcEEE-EecCchHHHhhhC-CCCeEeCCCCChHhHHHHHHHHhcCCCCCCCh
Q 003435 14 FLIVLDDVWDEDGENMEKALSWLNVGGSGSCVL-VTTRSGRVASMMG-TVPTQHLTCLSSEDSWVLFKHFAFGSVEDEST 91 (820)
Q Consensus 14 ~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~ii-iTtr~~~~~~~~~-~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~~~~ 91 (820)
=.+|||+++....+.|.++.....+....+|-| ||+.-..+-.-.. .-..|..++|.+++..+=+...+-+..- +
T Consensus 131 KiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v---~ 207 (346)
T KOG0989|consen 131 KIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGV---D 207 (346)
T ss_pred eEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCC---C
Confidence 478999999888899999999888766677744 5554433222111 1126999999999999999888743322 2
Q ss_pred hHHHHHHHHHHHhcCC-hHHHHH
Q 003435 92 ELEEIGQKIVAKCKGL-PIAIKT 113 (820)
Q Consensus 92 ~~~~~~~~i~~~c~gl-Plal~~ 113 (820)
--++..+.|++.++|- --|+.+
T Consensus 208 ~d~~al~~I~~~S~GdLR~Ait~ 230 (346)
T KOG0989|consen 208 IDDDALKLIAKISDGDLRRAITT 230 (346)
T ss_pred CCHHHHHHHHHHcCCcHHHHHHH
Confidence 2345678889999884 334433
No 99
>PRK08727 hypothetical protein; Validated
Probab=88.94 E-value=2.9 Score=41.11 Aligned_cols=96 Identities=16% Similarity=0.040 Sum_probs=59.2
Q ss_pred eEEEEEeCCCCCC-hhhHHHHHhhccC--CCCCcEEEEecCc---------hHHHhhhCCCCeEeCCCCChHhHHHHHHH
Q 003435 13 GFLIVLDDVWDED-GENMEKALSWLNV--GGSGSCVLVTTRS---------GRVASMMGTVPTQHLTCLSSEDSWVLFKH 80 (820)
Q Consensus 13 ~~llvlDdv~~~~-~~~~~~~~~~~~~--~~~gs~iiiTtr~---------~~~~~~~~~~~~~~l~~l~~~~a~~Lf~~ 80 (820)
.-+|||||+.... ...|+.....+.. ...|..||+||+. +.+...+.....+++++++.++-.+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 3589999996422 1234432222211 1346679999985 23334444445899999999999999998
Q ss_pred HhcCCCCCCChhHHHHHHHHHHHhcCChHHH
Q 003435 81 FAFGSVEDESTELEEIGQKIVAKCKGLPIAI 111 (820)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~~c~glPlal 111 (820)
.+....- .--++...-+++++.|-.-++
T Consensus 174 ~a~~~~l---~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 174 RAQRRGL---ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHcCC---CCCHHHHHHHHHhCCCCHHHH
Confidence 7643211 222455777888887654443
No 100
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=88.06 E-value=3 Score=45.99 Aligned_cols=96 Identities=17% Similarity=0.127 Sum_probs=66.4
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEE-ecCchHHHhhhC-CCCeEeCCCCChHhHHHHHHHHhcCCCC
Q 003435 10 RGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLV-TTRSGRVASMMG-TVPTQHLTCLSSEDSWVLFKHFAFGSVE 87 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iii-Ttr~~~~~~~~~-~~~~~~l~~l~~~~a~~Lf~~~~~~~~~ 87 (820)
.+++-++|+|+++.-....|..+...+....+.+++|+ ||+.+.+..... .-..+++++++.++..+.+...+-....
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi 205 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL 205 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45677899999988667788888887766556666664 555555544321 1137999999999999999887743221
Q ss_pred CCChhHHHHHHHHHHHhcCCh
Q 003435 88 DESTELEEIGQKIVAKCKGLP 108 (820)
Q Consensus 88 ~~~~~~~~~~~~i~~~c~glP 108 (820)
.-..+.+..|++.++|-+
T Consensus 206 ---~ie~eAL~~Ia~~s~Gsl 223 (507)
T PRK06645 206 ---KTDIEALRIIAYKSEGSA 223 (507)
T ss_pred ---CCCHHHHHHHHHHcCCCH
Confidence 112345677889999866
No 101
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=87.15 E-value=2 Score=48.95 Aligned_cols=112 Identities=13% Similarity=0.044 Sum_probs=71.5
Q ss_pred HHHHHHcCCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEE--ecCchHHHh-hh-CCCCeEeCCCCChHhHHHHH
Q 003435 3 WKLEVYWRGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLV--TTRSGRVAS-MM-GTVPTQHLTCLSSEDSWVLF 78 (820)
Q Consensus 3 ~~l~~~l~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iii--Ttr~~~~~~-~~-~~~~~~~l~~l~~~~a~~Lf 78 (820)
+++.+.++.+++.++-|+.|..+...|+.+...+....+...|++ ||++..... .. .....+++.+++.+|.++++
T Consensus 283 ~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il 362 (615)
T TIGR02903 283 NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIV 362 (615)
T ss_pred HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHH
Confidence 568888899999999888887766778888777766556555555 666533211 11 11136788999999999999
Q ss_pred HHHhcCCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHh
Q 003435 79 KHFAFGSVEDESTELEEIGQKIVAKCKGLPIAIKTIGSI 117 (820)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~ 117 (820)
.+.+-+...... .++.+.+.+++..-+-|+.+++.+
T Consensus 363 ~~~a~~~~v~ls---~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 363 LNAAEKINVHLA---AGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHCCCcHHHHHHHHHHH
Confidence 987643211111 344555555554446666665544
No 102
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=86.65 E-value=4.9 Score=41.66 Aligned_cols=97 Identities=13% Similarity=0.115 Sum_probs=66.0
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchHHH-hh-hCCCCeEeCCCCChHhHHHHHHHHhcCCCC
Q 003435 10 RGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGRVA-SM-MGTVPTQHLTCLSSEDSWVLFKHFAFGSVE 87 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~~~-~~-~~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~ 87 (820)
.+++=++|+|+++....+.+..+...+....+++.+|++|.+.+.. .. ......+++.++++++....+.+... +.
T Consensus 91 ~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~-~~- 168 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYN-DI- 168 (313)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhc-CC-
Confidence 3455577778886666788999998887766799999888765422 11 11113799999999998887765432 11
Q ss_pred CCChhHHHHHHHHHHHhcCChHHHHH
Q 003435 88 DESTELEEIGQKIVAKCKGLPIAIKT 113 (820)
Q Consensus 88 ~~~~~~~~~~~~i~~~c~glPlal~~ 113 (820)
. .+.+..++..++|.|..+..
T Consensus 169 --~---~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 169 --K---EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred --C---HHHHHHHHHHcCCCHHHHHH
Confidence 1 23367889999998865443
No 103
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=86.45 E-value=4.3 Score=42.55 Aligned_cols=100 Identities=16% Similarity=0.192 Sum_probs=64.9
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCc-hHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCC
Q 003435 10 RGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRS-GRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVE 87 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~ 87 (820)
.+++-++|+|++........+.+...+.....+..+|++|.. ..+.... ..-..+++++++.++..+.+.+... ...
T Consensus 139 ~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~-~~~ 217 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGS-SQG 217 (351)
T ss_pred cCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhc-ccC
Confidence 356678999999887767777777776544445555555543 3332211 1113899999999999999987431 111
Q ss_pred CCChhHHHHHHHHHHHhcCChHHHHHH
Q 003435 88 DESTELEEIGQKIVAKCKGLPIAIKTI 114 (820)
Q Consensus 88 ~~~~~~~~~~~~i~~~c~glPlal~~~ 114 (820)
--.+.+..+++.++|.|.....+
T Consensus 218 ----~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 218 ----SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred ----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 11344678899999999765543
No 104
>PRK13342 recombination factor protein RarA; Reviewed
Probab=86.39 E-value=3.6 Score=44.58 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=62.9
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEE--ecCchH--HHhh-hCCCCeEeCCCCChHhHHHHHHHHhcC
Q 003435 10 RGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLV--TTRSGR--VASM-MGTVPTQHLTCLSSEDSWVLFKHFAFG 84 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iii--Ttr~~~--~~~~-~~~~~~~~l~~l~~~~a~~Lf~~~~~~ 84 (820)
.+++.+|++|+++.-.....+.+...+. .|..++| ||.+.. +... ......+++++++.++.++++.+.+..
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHH
Confidence 4578899999998765555566655552 3555554 344322 1111 111247999999999999999886532
Q ss_pred CCCCCChhHHHHHHHHHHHhcCChHHHHHHH
Q 003435 85 SVEDESTELEEIGQKIVAKCKGLPIAIKTIG 115 (820)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~~c~glPlal~~~~ 115 (820)
......+--.+....+++.|+|-|-.+.-+.
T Consensus 167 ~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 167 KERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred hhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 1110001224567888999999886654443
No 105
>PF14516 AAA_35: AAA-like domain
Probab=86.27 E-value=12 Score=39.04 Aligned_cols=105 Identities=11% Similarity=0.147 Sum_probs=64.0
Q ss_pred CceEEEEEeCCCCCCh------hhHHHHHhhccCCC----CCcE--EEEec-CchHHHhh----hCCCCeEeCCCCChHh
Q 003435 11 GRGFLIVLDDVWDEDG------ENMEKALSWLNVGG----SGSC--VLVTT-RSGRVASM----MGTVPTQHLTCLSSED 73 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~------~~~~~~~~~~~~~~----~gs~--iiiTt-r~~~~~~~----~~~~~~~~l~~l~~~~ 73 (820)
.++.+|++|+|+..-. +-+..++.|..... -.+= |++-+ +.....+. +.....+++++++.+|
T Consensus 126 ~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~e 205 (331)
T PF14516_consen 126 DKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEE 205 (331)
T ss_pred CCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHH
Confidence 6899999999965221 23444444443211 0111 22222 11111111 1122379999999999
Q ss_pred HHHHHHHHhcCCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhccCC
Q 003435 74 SWVLFKHFAFGSVEDESTELEEIGQKIVAKCKGLPIAIKTIGSILRSKD 122 (820)
Q Consensus 74 a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~k~ 122 (820)
...|..+.... ..+.. ..++....+|+|.=+..++..+..+.
T Consensus 206 v~~L~~~~~~~----~~~~~---~~~l~~~tgGhP~Lv~~~~~~l~~~~ 247 (331)
T PF14516_consen 206 VQELAQRYGLE----FSQEQ---LEQLMDWTGGHPYLVQKACYLLVEEQ 247 (331)
T ss_pred HHHHHHhhhcc----CCHHH---HHHHHHHHCCCHHHHHHHHHHHHHcc
Confidence 99999875422 12222 88999999999999999999996653
No 106
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=85.92 E-value=4.5 Score=46.15 Aligned_cols=103 Identities=9% Similarity=0.013 Sum_probs=69.4
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchH-HHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGR-VASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~-~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
++.-++|||++..-....|..+...+-....+.++|+||++.+ +.... ..-..+.++.++.++..+.+.+.+... .
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~E-g- 195 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEE-R- 195 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHc-C-
Confidence 4556888999987766778888877755556788888777743 32111 111379999999999999998876322 1
Q ss_pred CChhHHHHHHHHHHHhcCC-hHHHHHHHH
Q 003435 89 ESTELEEIGQKIVAKCKGL-PIAIKTIGS 116 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~gl-Plal~~~~~ 116 (820)
..--.+....|++.++|- --|+..+-.
T Consensus 196 -I~id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 196 -IAFEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred -CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 112345678889999884 456665443
No 107
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=85.71 E-value=3.1 Score=40.37 Aligned_cols=106 Identities=16% Similarity=0.104 Sum_probs=59.0
Q ss_pred HHHHHcCCceEEEEEeCCCCCCh-hhHHHHHhhccC--CCCCcEEEEecCc---------hHHHhhhCCCCeEeCCCCCh
Q 003435 4 KLEVYWRGRGFLIVLDDVWDEDG-ENMEKALSWLNV--GGSGSCVLVTTRS---------GRVASMMGTVPTQHLTCLSS 71 (820)
Q Consensus 4 ~l~~~l~~~~~llvlDdv~~~~~-~~~~~~~~~~~~--~~~gs~iiiTtr~---------~~~~~~~~~~~~~~l~~l~~ 71 (820)
++++.+++ -=+||+|||+.-.. ..|+.....+-+ ...|-+||+|++. +.+..++.+.-++++++++.
T Consensus 90 ~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~ 168 (219)
T PF00308_consen 90 EFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDD 168 (219)
T ss_dssp HHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----H
T ss_pred hhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCH
Confidence 44555553 34678999966322 334432222111 1357789999955 23444445555899999999
Q ss_pred HhHHHHHHHHhcCCCCCCChhHHHHHHHHHHHhcCChHHHHH
Q 003435 72 EDSWVLFKHFAFGSVEDESTELEEIGQKIVAKCKGLPIAIKT 113 (820)
Q Consensus 72 ~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~ 113 (820)
++-.+++.+++-...-. --+++++-+++++.+-.-.+.-
T Consensus 169 ~~r~~il~~~a~~~~~~---l~~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 169 EDRRRILQKKAKERGIE---LPEEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp HHHHHHHHHHHHHTT-----S-HHHHHHHHHHTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC---CcHHHHHHHHHhhcCCHHHHHH
Confidence 99999999887433222 2345677777777665544443
No 108
>PRK08084 DNA replication initiation factor; Provisional
Probab=85.68 E-value=5.9 Score=39.00 Aligned_cols=99 Identities=19% Similarity=0.081 Sum_probs=61.1
Q ss_pred EEEEEeCCCCCC-hhhHHHHH-hhccC-CCCC-cEEEEecCch---------HHHhhhCCCCeEeCCCCChHhHHHHHHH
Q 003435 14 FLIVLDDVWDED-GENMEKAL-SWLNV-GGSG-SCVLVTTRSG---------RVASMMGTVPTQHLTCLSSEDSWVLFKH 80 (820)
Q Consensus 14 ~llvlDdv~~~~-~~~~~~~~-~~~~~-~~~g-s~iiiTtr~~---------~~~~~~~~~~~~~l~~l~~~~a~~Lf~~ 80 (820)
-+||+||+.... ...|+... ..+.. ...| .+||+||+.. .+..++.+..+++++++++++-.+.+.+
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~ 178 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQL 178 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHH
Confidence 378999995522 13455433 22211 1123 4799999753 4455566667999999999999999887
Q ss_pred HhcCCCCCCChhHHHHHHHHHHHhcCChHHHHHHH
Q 003435 81 FAFGSVEDESTELEEIGQKIVAKCKGLPIAIKTIG 115 (820)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~ 115 (820)
++.... ..--+++..-+++.+.|-.-++..+-
T Consensus 179 ~a~~~~---~~l~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 179 RARLRG---FELPEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHHHcC---CCCCHHHHHHHHHhhcCCHHHHHHHH
Confidence 664321 12234667888888887655444433
No 109
>PRK06620 hypothetical protein; Validated
Probab=85.31 E-value=5.6 Score=38.45 Aligned_cols=91 Identities=13% Similarity=0.035 Sum_probs=54.3
Q ss_pred eEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCch-------HHHhhhCCCCeEeCCCCChHhHHHHHHHHhcCC
Q 003435 13 GFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSG-------RVASMMGTVPTQHLTCLSSEDSWVLFKHFAFGS 85 (820)
Q Consensus 13 ~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~-------~~~~~~~~~~~~~l~~l~~~~a~~Lf~~~~~~~ 85 (820)
.-++++|||..-+......+...+. ..|..||+|++.. .+..++.+.-++++++++.++-.++..+.+-..
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 3578899995321122222222222 3567899999752 233444554589999999999888887765322
Q ss_pred CCCCChhHHHHHHHHHHHhcCCh
Q 003435 86 VEDESTELEEIGQKIVAKCKGLP 108 (820)
Q Consensus 86 ~~~~~~~~~~~~~~i~~~c~glP 108 (820)
.- .--++++.-+++++.|--
T Consensus 164 ~l---~l~~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 164 SV---TISRQIIDFLLVNLPREY 183 (214)
T ss_pred CC---CCCHHHHHHHHHHccCCH
Confidence 11 112456777777777643
No 110
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.01 E-value=8 Score=41.04 Aligned_cols=97 Identities=13% Similarity=0.075 Sum_probs=65.1
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCc-hHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRS-GRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
+++-++|+|++..-..+.++.+...+.......++|++|.+ ..+.... .....+++++++.++..+.+...+-....
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~- 196 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI- 196 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 45669999999776666788887777665567777777655 3333221 11247999999999998888775533211
Q ss_pred CChhHHHHHHHHHHHhcCChHH
Q 003435 89 ESTELEEIGQKIVAKCKGLPIA 110 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glPla 110 (820)
.--++.+..+++.++|-|-.
T Consensus 197 --~i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 197 --DTDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred --CCCHHHHHHHHHHcCCCHHH
Confidence 11234577889999997753
No 111
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.81 E-value=4.8 Score=44.55 Aligned_cols=101 Identities=12% Similarity=0.077 Sum_probs=67.5
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCc-hHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRS-GRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
+++-++|+|+++....+.++.+...+........+|++|.. +.+.... .....+++.+++.++..+.+.+.+-.....
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~ 194 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE 194 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 45668999999877667788888877665556666665544 3332211 112379999999999999998876332111
Q ss_pred CChhHHHHHHHHHHHhcCChH-HHHHH
Q 003435 89 ESTELEEIGQKIVAKCKGLPI-AIKTI 114 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glPl-al~~~ 114 (820)
--.+.+..+++.++|.+- |+..+
T Consensus 195 ---i~~~Al~~ia~~s~GdlR~aln~L 218 (504)
T PRK14963 195 ---AEPEALQLVARLADGAMRDAESLL 218 (504)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 124567889999999874 44333
No 112
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.76 E-value=0.64 Score=27.21 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=11.9
Q ss_pred CCccEEEeccCCCcccccccc
Q 003435 732 SSLLELSIEGCPMLKLSLKSI 752 (820)
Q Consensus 732 ~~L~~L~l~~n~~~~~~~~~~ 752 (820)
++|++|++++|++....+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666555444333
No 113
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.76 E-value=0.64 Score=27.21 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=11.9
Q ss_pred CCccEEEeccCCCcccccccc
Q 003435 732 SSLLELSIEGCPMLKLSLKSI 752 (820)
Q Consensus 732 ~~L~~L~l~~n~~~~~~~~~~ 752 (820)
++|++|++++|++....+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666555444333
No 114
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=84.51 E-value=0.011 Score=64.30 Aligned_cols=155 Identities=23% Similarity=0.236 Sum_probs=91.6
Q ss_pred CCCcccEEEEcCCCCCC--------CCCCC-CCcCceEecccCC------ccccccCCCCCcceEEccCCCCCc----cc
Q 003435 592 PFPCLEKLVVEGCSMLN--------TLPFI-RNLKNLALCNSND------KLVCSLSRFPSLSSLVVDNFPELN----CL 652 (820)
Q Consensus 592 ~~~~L~~L~l~~~~~~~--------~~~~l-~~L~~L~l~~~~~------~~~~~~~~l~~L~~L~l~~n~~~~----~~ 652 (820)
..+.|+.|++++|.+.. .++.. ..++.|++..|.. .....+.....++.++++.|.+.. .+
T Consensus 113 t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l 192 (478)
T KOG4308|consen 113 TLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVL 192 (478)
T ss_pred ccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHH
Confidence 56678888888887652 11222 3455666666552 122234456777788888777642 12
Q ss_pred ccc----CCCCCCccEEEEccCCCccch----hhhcCCCCC-cceEeeccCccccc----CccccCCC-CcccEEEecCC
Q 003435 653 SDK----TGNLNSLVKLTVNECDNLESL----FVFMQSFSS-LRHLSILHCDKLES----LPMSLEKF-CSLQKLDIVEC 718 (820)
Q Consensus 653 ~~~----~~~l~~L~~L~L~~n~~~~~~----~~~~~~l~~-L~~L~l~~n~~~~~----~~~~l~~l-~~L~~L~L~~n 718 (820)
+.. +....++++|.+++|.++... ...+...+. +..|++..|.+-.. ....+..+ ..+++++++.|
T Consensus 193 ~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n 272 (478)
T KOG4308|consen 193 SQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRN 272 (478)
T ss_pred hhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcC
Confidence 222 234667778888877655321 224555555 66677777765432 22244444 66778888888
Q ss_pred CCCCcc----ccccCCCCCccEEEeccCCCcc
Q 003435 719 PRLVHI----PDIMGQHSSLLELSIEGCPMLK 746 (820)
Q Consensus 719 ~~~~~~----~~~~~~l~~L~~L~l~~n~~~~ 746 (820)
.+...- +..+..++.++++.+++|++..
T Consensus 273 si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 273 SITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred CccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 776533 3445566778888888887665
No 115
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=84.28 E-value=5.9 Score=44.94 Aligned_cols=101 Identities=12% Similarity=0.025 Sum_probs=64.5
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchH-HHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGR-VASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~-~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
+++-++|+|++..-.......+...+.......++|++|.+.+ +.... +.-..|+++.++.++..+.+.+.+-+...
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi- 196 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI- 196 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC-
Confidence 5667899999976555566677777654445667777776532 22111 11136888899999998888776532211
Q ss_pred CChhHHHHHHHHHHHhcCChH-HHHHH
Q 003435 89 ESTELEEIGQKIVAKCKGLPI-AIKTI 114 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glPl-al~~~ 114 (820)
.--.+.+..|++.++|-+- |+..+
T Consensus 197 --~id~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 197 --AYEPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred --CcCHHHHHHHHHHhCCCHHHHHHHH
Confidence 1234567889999998873 44333
No 116
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=83.49 E-value=8.8 Score=40.32 Aligned_cols=99 Identities=9% Similarity=-0.022 Sum_probs=60.5
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCch-HHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSG-RVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~-~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
+.+-+||+||+..-..+....+...+......+++|+||... .+.... .....+++.+++.++..+.+...+-.....
T Consensus 124 ~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~ 203 (337)
T PRK12402 124 ADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD 203 (337)
T ss_pred CCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 344589999996654444555555554444567788777542 222211 112378899999999988887765322111
Q ss_pred CChhHHHHHHHHHHHhcCChHHHH
Q 003435 89 ESTELEEIGQKIVAKCKGLPIAIK 112 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glPlal~ 112 (820)
--.+.+..+++.++|-+-.+.
T Consensus 204 ---~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 204 ---YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHH
Confidence 124567888888888654443
No 117
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=83.18 E-value=0.033 Score=60.50 Aligned_cols=208 Identities=20% Similarity=0.171 Sum_probs=123.1
Q ss_pred CCcceeeccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCC
Q 003435 530 NLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNT 609 (820)
Q Consensus 530 ~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 609 (820)
.+..+.|.+|.+..-..... ...+...+.|+.|+++++.--.. . ... ...+....-..+++|++..|.....
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l--~~~l~t~~~L~~L~l~~n~l~~~-g--~~~---l~~~l~~~~~~l~~L~l~~c~l~~~ 159 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEEL--AQALKTLPTLGQLDLSGNNLGDE-G--ARL---LCEGLRLPQCLLQTLELVSCSLTSE 159 (478)
T ss_pred hHHHhhhhhCccccchHHHH--HHHhcccccHhHhhcccCCCccH-h--HHH---HHhhcccchHHHHHHHhhccccccc
Confidence 36667777776554311111 12346778888888877642200 0 000 0011110125677788888876542
Q ss_pred --------CCCCCCcCceEecccCCcc------cccc----CCCCCcceEEccCCCCCcc----ccccCCCCCC-ccEEE
Q 003435 610 --------LPFIRNLKNLALCNSNDKL------VCSL----SRFPSLSSLVVDNFPELNC----LSDKTGNLNS-LVKLT 666 (820)
Q Consensus 610 --------~~~l~~L~~L~l~~~~~~~------~~~~----~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~-L~~L~ 666 (820)
+.....++.+++..|.... ...+ ....++++|++++|.++.. +...+...+. +..|+
T Consensus 160 g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~ 239 (478)
T KOG4308|consen 160 GAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELD 239 (478)
T ss_pred chHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHH
Confidence 2235677888888877321 1222 3467899999999987632 2223455565 77799
Q ss_pred EccCCCccc----hhhhcCCC-CCcceEeeccCccccc----CccccCCCCcccEEEecCCCCCCccc----cccCCCCC
Q 003435 667 VNECDNLES----LFVFMQSF-SSLRHLSILHCDKLES----LPMSLEKFCSLQKLDIVECPRLVHIP----DIMGQHSS 733 (820)
Q Consensus 667 L~~n~~~~~----~~~~~~~l-~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~L~~n~~~~~~~----~~~~~l~~ 733 (820)
+..|..-.. +...+..+ +.+++++++.|.+... +...+..++.++++.+++|++...-. .....-..
T Consensus 240 l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~ 319 (478)
T KOG4308|consen 240 LASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTP 319 (478)
T ss_pred HHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhccc
Confidence 999876544 23355556 7889999999988754 34456678899999999998765322 22333455
Q ss_pred ccEEEeccCCCc
Q 003435 734 LLELSIEGCPML 745 (820)
Q Consensus 734 L~~L~l~~n~~~ 745 (820)
+..+-+.++...
T Consensus 320 ~~~~~l~~~~~~ 331 (478)
T KOG4308|consen 320 LLHLVLGGTGKG 331 (478)
T ss_pred chhhhccccCcc
Confidence 566666655433
No 118
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=82.92 E-value=8.9 Score=40.92 Aligned_cols=96 Identities=14% Similarity=0.061 Sum_probs=63.2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCch-HHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSG-RVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~-~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
+++-++|+|++.....+....+...+....++..+|++|.+. .+.... ..-..+.+++++.++..+.+..... .
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-~--- 191 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-V--- 191 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-C---
Confidence 445588889998876666666776665444566677666663 333221 1124899999999999988875321 1
Q ss_pred CChhHHHHHHHHHHHhcCChHHHHHH
Q 003435 89 ESTELEEIGQKIVAKCKGLPIAIKTI 114 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glPlal~~~ 114 (820)
+ .+.+..+++.++|-|.+...+
T Consensus 192 --~--~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 192 --D--PETARRAARASQGHIGRARRL 213 (394)
T ss_pred --C--HHHHHHHHHHcCCCHHHHHHH
Confidence 1 345788999999999654433
No 119
>PLN03025 replication factor C subunit; Provisional
Probab=82.48 E-value=8 Score=40.23 Aligned_cols=92 Identities=11% Similarity=0.079 Sum_probs=61.0
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCch-H----HHhhhCCCCeEeCCCCChHhHHHHHHHHhcCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSG-R----VASMMGTVPTQHLTCLSSEDSWVLFKHFAFGS 85 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~-~----~~~~~~~~~~~~l~~l~~~~a~~Lf~~~~~~~ 85 (820)
++.-++|||+++.-.....+.+..........+++|+++... . +...| ..++++++++++..+.+...+-..
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc---~~i~f~~l~~~~l~~~L~~i~~~e 174 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC---AIVRFSRLSDQEILGRLMKVVEAE 174 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh---hcccCCCCCHHHHHHHHHHHHHHc
Confidence 456789999998765555555655554445677888777542 2 22222 379999999999998888776332
Q ss_pred CCCCChhHHHHHHHHHHHhcCCh
Q 003435 86 VEDESTELEEIGQKIVAKCKGLP 108 (820)
Q Consensus 86 ~~~~~~~~~~~~~~i~~~c~glP 108 (820)
...- -.+....+++.++|-.
T Consensus 175 gi~i---~~~~l~~i~~~~~gDl 194 (319)
T PLN03025 175 KVPY---VPEGLEAIIFTADGDM 194 (319)
T ss_pred CCCC---CHHHHHHHHHHcCCCH
Confidence 2111 1456788899998855
No 120
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=82.29 E-value=0.93 Score=26.58 Aligned_cols=17 Identities=53% Similarity=0.694 Sum_probs=11.2
Q ss_pred cccccEEeccCcccccc
Q 003435 326 LKHLRYLDLSHTYIRKI 342 (820)
Q Consensus 326 l~~L~~L~Ls~n~i~~l 342 (820)
+++|++|+|++|.|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 35677777777776654
No 121
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=81.69 E-value=0.85 Score=26.58 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=13.1
Q ss_pred ccccEEeccCcccccccc
Q 003435 327 KHLRYLDLSHTYIRKIPG 344 (820)
Q Consensus 327 ~~L~~L~Ls~n~i~~lp~ 344 (820)
++|++|+.++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357777777777777775
No 122
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=81.41 E-value=8.5 Score=39.96 Aligned_cols=96 Identities=11% Similarity=0.112 Sum_probs=63.8
Q ss_pred ceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchH-HHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCCC
Q 003435 12 RGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGR-VASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVEDE 89 (820)
Q Consensus 12 ~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~-~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~~ 89 (820)
++=++|+|+++....+....+...+-.-..++.+|+||.+.. +.... ..-..+.+.+++.+++.+.+.......
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~---- 181 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES---- 181 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC----
Confidence 333446799988777788888887755456777888877743 22211 112379999999999998887653111
Q ss_pred ChhHHHHHHHHHHHhcCChHHHHHH
Q 003435 90 STELEEIGQKIVAKCKGLPIAIKTI 114 (820)
Q Consensus 90 ~~~~~~~~~~i~~~c~glPlal~~~ 114 (820)
..+.+..++..++|-|.....+
T Consensus 182 ---~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 ---DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ---ChHHHHHHHHHcCCCHHHHHHH
Confidence 1233567789999999755443
No 123
>PRK05642 DNA replication initiation factor; Validated
Probab=81.03 E-value=9.8 Score=37.40 Aligned_cols=101 Identities=20% Similarity=0.157 Sum_probs=60.6
Q ss_pred EEEEeCCCCCC-hhhHHH-HHhhccC-CCCCcEEEEecCchH---------HHhhhCCCCeEeCCCCChHhHHHHHHHHh
Q 003435 15 LIVLDDVWDED-GENMEK-ALSWLNV-GGSGSCVLVTTRSGR---------VASMMGTVPTQHLTCLSSEDSWVLFKHFA 82 (820)
Q Consensus 15 llvlDdv~~~~-~~~~~~-~~~~~~~-~~~gs~iiiTtr~~~---------~~~~~~~~~~~~l~~l~~~~a~~Lf~~~~ 82 (820)
++|+||+.... ...|+. +...+.. ...|.+||+||+... +..++++.-++++++++.++-.+..++++
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 67899995321 235554 3333311 235678999887522 22233333579999999999999998666
Q ss_pred cCCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhh
Q 003435 83 FGSVEDESTELEEIGQKIVAKCKGLPIAIKTIGSIL 118 (820)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l 118 (820)
....-.. -+++..-+++++.|-.-++.-+-..|
T Consensus 180 ~~~~~~l---~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 180 SRRGLHL---TDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHcCCCC---CHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 4321111 14677888888888765554444333
No 124
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=80.71 E-value=12 Score=36.61 Aligned_cols=102 Identities=19% Similarity=0.147 Sum_probs=58.7
Q ss_pred EEEEEeCCCCCChhhHHHHHhhccC-CCCCc-EEEEecCchHHH--------hhhCCCCeEeCCCCChHhHHHHHHHHhc
Q 003435 14 FLIVLDDVWDEDGENMEKALSWLNV-GGSGS-CVLVTTRSGRVA--------SMMGTVPTQHLTCLSSEDSWVLFKHFAF 83 (820)
Q Consensus 14 ~llvlDdv~~~~~~~~~~~~~~~~~-~~~gs-~iiiTtr~~~~~--------~~~~~~~~~~l~~l~~~~a~~Lf~~~~~ 83 (820)
-+||+||+...+.+.-+.+...+.. ...|. .||+|++..... ..+.....++++++++++-..++.+.+-
T Consensus 92 ~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~ 171 (227)
T PRK08903 92 ELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAA 171 (227)
T ss_pred CEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHH
Confidence 4789999954322222233333322 12344 466776643221 1222234899999999877776665432
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhh
Q 003435 84 GSVEDESTELEEIGQKIVAKCKGLPIAIKTIGSIL 118 (820)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l 118 (820)
+. . ..--++..+.+++.+.|.+..+..+-..+
T Consensus 172 ~~-~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 172 ER-G--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred Hc-C--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 11 1 11124567888888999998887777665
No 125
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.43 E-value=9.2 Score=43.15 Aligned_cols=96 Identities=13% Similarity=0.027 Sum_probs=64.6
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchH-HHhh-hCCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGR-VASM-MGTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~-~~~~-~~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
+++-++|+|+|..-.......+...+.....+.++|++|.+.+ +... ...-..+++++++.++..+.+.+.+-+...
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI- 195 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI- 195 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC-
Confidence 5667899999977666677777777765556677887776632 2211 111137999999999999888776633211
Q ss_pred CChhHHHHHHHHHHHhcCChH
Q 003435 89 ESTELEEIGQKIVAKCKGLPI 109 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glPl 109 (820)
.--.+....|++.++|-+-
T Consensus 196 --~id~eAL~~IA~~S~GdLR 214 (702)
T PRK14960 196 --AADQDAIWQIAESAQGSLR 214 (702)
T ss_pred --CCCHHHHHHHHHHcCCCHH
Confidence 2234557788899998663
No 126
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.43 E-value=18 Score=40.81 Aligned_cols=99 Identities=9% Similarity=0.004 Sum_probs=65.0
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecC-chHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCC
Q 003435 10 RGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTR-SGRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVE 87 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr-~~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~ 87 (820)
.++.-++|||++..-....++.+...+-....+.++|++|. ..++.... ..-..|.++.++.++..+.+.+.+.....
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi 201 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI 201 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC
Confidence 45667899999988777778888877755445666555554 44443221 11137999999999999988876532211
Q ss_pred CCChhHHHHHHHHHHHhcCChHHH
Q 003435 88 DESTELEEIGQKIVAKCKGLPIAI 111 (820)
Q Consensus 88 ~~~~~~~~~~~~i~~~c~glPlal 111 (820)
.-..+....|++.++|.|-..
T Consensus 202 ---~~d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 202 ---AHEVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHH
Confidence 112345678899999988533
No 127
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=79.79 E-value=18 Score=38.27 Aligned_cols=102 Identities=12% Similarity=0.047 Sum_probs=64.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchH-HHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGR-VASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~-~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
+++-++|+|++..-.......+...+......+.+|++|.+.. +.... .....++++++++++..+.+...+-.....
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~ 195 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK 195 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4555889999966555567777777755445667777765533 32221 111378899999999888887765322111
Q ss_pred CChhHHHHHHHHHHHhcCChHHHHHHH
Q 003435 89 ESTELEEIGQKIVAKCKGLPIAIKTIG 115 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glPlal~~~~ 115 (820)
. -.+.+..+++.++|-|-.+....
T Consensus 196 i---~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 196 I---EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred C---CHHHHHHHHHHcCCChHHHHHHH
Confidence 1 13567888999999886554443
No 128
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=79.58 E-value=8.5 Score=39.66 Aligned_cols=96 Identities=11% Similarity=0.147 Sum_probs=63.3
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCc-hHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRS-GRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
+++=++|+|+++....+.-.++...+-.-..++.+|++|.. ..+.... ..-..+.+.+++.+++.+.+... +.+
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~---~~~- 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ---GVS- 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc---CCC-
Confidence 55668999999776666666677666554567777777765 3333221 11137889999999998888653 111
Q ss_pred CChhHHHHHHHHHHHhcCChHHHHHHH
Q 003435 89 ESTELEEIGQKIVAKCKGLPIAIKTIG 115 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glPlal~~~~ 115 (820)
..-+..++..++|-|+....+.
T Consensus 188 -----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 188 -----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -----hHHHHHHHHHcCCCHHHHHHHh
Confidence 1226678999999998665443
No 129
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.14 E-value=26 Score=41.20 Aligned_cols=102 Identities=15% Similarity=0.111 Sum_probs=69.1
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCc-hHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCC
Q 003435 10 RGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRS-GRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVE 87 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~ 87 (820)
++++-++|||++.....+..+.+...+-......++|++|.+ ..+.... .....|++++++.++..+.+.+.+-.. .
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E-g 195 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE-Q 195 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc-C
Confidence 467789999999887777888888777655556676665555 4443221 111479999999999998887765322 1
Q ss_pred CCChhHHHHHHHHHHHhcCChH-HHHHH
Q 003435 88 DESTELEEIGQKIVAKCKGLPI-AIKTI 114 (820)
Q Consensus 88 ~~~~~~~~~~~~i~~~c~glPl-al~~~ 114 (820)
..-..+.+..|++.++|-|= |+.++
T Consensus 196 --I~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 196 --LPFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred --CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 12234567889999999774 55444
No 130
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=78.12 E-value=88 Score=36.98 Aligned_cols=191 Identities=13% Similarity=0.138 Sum_probs=94.4
Q ss_pred eEEEEEeCCCCCC---hhhHHHHHhhccCCCCCcEEEE--ecCc--------hHHHhhhCCCCeEeCCCCChHhHHHHHH
Q 003435 13 GFLIVLDDVWDED---GENMEKALSWLNVGGSGSCVLV--TTRS--------GRVASMMGTVPTQHLTCLSSEDSWVLFK 79 (820)
Q Consensus 13 ~~llvlDdv~~~~---~~~~~~~~~~~~~~~~gs~iii--Ttr~--------~~~~~~~~~~~~~~l~~l~~~~a~~Lf~ 79 (820)
..+||||+|+.-. ++.+-.+..+.. ..+++|+| +|.+ +.+...++. ..+..++.+.++-.+++.
T Consensus 870 v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRSRLg~-eeIvF~PYTaEQL~dILk 946 (1164)
T PTZ00112 870 VSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRSRLAF-GRLVFSPYKGDEIEKIIK 946 (1164)
T ss_pred ceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhhcccc-ccccCCCCCHHHHHHHHH
Confidence 4589999996522 222333333221 24666554 3432 222223332 246779999999999999
Q ss_pred HHhcCCCC-CCChhHHHHHHHHHHHhcCChHHHHHHHHhhccCC-----HHHHHHhhhcchhchhccCcchhhHHHhhhc
Q 003435 80 HFAFGSVE-DESTELEEIGQKIVAKCKGLPIAIKTIGSILRSKD-----KEEWLSVADCDLWTLLEFKSHVLPVLKRSYD 153 (820)
Q Consensus 80 ~~~~~~~~-~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~k~-----~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~ 153 (820)
.++-.... -....++-+|+.++..-|-.=.||.++-.+...+. .++-+.+... . ....+.-.-.
T Consensus 947 ~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikegskVT~eHVrkAlee----i------E~srI~e~Ik 1016 (1164)
T PTZ00112 947 ERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKIVPRDITEATNQ----L------FDSPLTNAIN 1016 (1164)
T ss_pred HHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH----H------HhhhHHHHHH
Confidence 88753322 22334444555555444556667776665553321 1122222111 0 0112233345
Q ss_pred CCChhHHHHHhhhcCCCC---CcccCHHHHHHHHH--HcCCcccCCCCCcHHHHHHHHHHHHhhccccc
Q 003435 154 NLPWHLKQCFAYCSIFPK---DYWINKEKLVRLWV--AEGFIRLDSGSEDLEETADDYFMELLQHSFFD 217 (820)
Q Consensus 154 ~L~~~~k~~fl~~a~f~~---~~~i~~~~li~~w~--~~gl~~~~~~~~~~~~~~~~~l~~L~~~~li~ 217 (820)
.||.+.|..++.+...-+ ...++..++..... ++...... +.+...+...+++.+|...+++.
T Consensus 1017 tLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~i-Gv~plTqRV~d~L~eL~~LGIIl 1084 (1164)
T PTZ00112 1017 YLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYI-GMCSNNELFKIMLDKLVKMGILL 1084 (1164)
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhc-CCCCcHHHHHHHHHHHHhcCeEE
Confidence 678877766654433222 22456666554332 22000000 12222226777888888888764
No 131
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=77.97 E-value=7.6 Score=41.26 Aligned_cols=94 Identities=15% Similarity=0.071 Sum_probs=54.5
Q ss_pred CceEEEEEeCCCCC-----------Chh---hHHHHHhhccC--CCCCcEEEEecCchH-----HHhhhCCCCeEeCCCC
Q 003435 11 GRGFLIVLDDVWDE-----------DGE---NMEKALSWLNV--GGSGSCVLVTTRSGR-----VASMMGTVPTQHLTCL 69 (820)
Q Consensus 11 ~~~~llvlDdv~~~-----------~~~---~~~~~~~~~~~--~~~gs~iiiTtr~~~-----~~~~~~~~~~~~l~~l 69 (820)
....+|++|+++.- +.+ .+..+...+.. ...+.+||.||.... +.+...-+..++++..
T Consensus 214 ~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P 293 (364)
T TIGR01242 214 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLP 293 (364)
T ss_pred cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCc
Confidence 34579999999642 111 12222222221 134678888887533 2221122357999999
Q ss_pred ChHhHHHHHHHHhcCCCCCCChhHHHHHHHHHHHhcCCh
Q 003435 70 SSEDSWVLFKHFAFGSVEDESTELEEIGQKIVAKCKGLP 108 (820)
Q Consensus 70 ~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 108 (820)
+.++.+++|...+.+.......++ ..+++.+.|..
T Consensus 294 ~~~~r~~Il~~~~~~~~l~~~~~~----~~la~~t~g~s 328 (364)
T TIGR01242 294 DFEGRLEILKIHTRKMKLAEDVDL----EAIAKMTEGAS 328 (364)
T ss_pred CHHHHHHHHHHHHhcCCCCccCCH----HHHHHHcCCCC
Confidence 999999999887754432222233 55666776653
No 132
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=77.82 E-value=16 Score=39.91 Aligned_cols=103 Identities=14% Similarity=0.013 Sum_probs=63.2
Q ss_pred eEEEEEeCCCCCCh-hhHH-HHHhhccC-CCCCcEEEEecCc---------hHHHhhhCCCCeEeCCCCChHhHHHHHHH
Q 003435 13 GFLIVLDDVWDEDG-ENME-KALSWLNV-GGSGSCVLVTTRS---------GRVASMMGTVPTQHLTCLSSEDSWVLFKH 80 (820)
Q Consensus 13 ~~llvlDdv~~~~~-~~~~-~~~~~~~~-~~~gs~iiiTtr~---------~~~~~~~~~~~~~~l~~l~~~~a~~Lf~~ 80 (820)
.-+||+||+..... +.|. .+...+.. ...|..||+|+.. +.+..++.+.-++++++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 34889999954321 2222 23222211 1345578888653 23344455555899999999999999988
Q ss_pred HhcCCCCCCChhHHHHHHHHHHHhcCChHHHHHHHH
Q 003435 81 FAFGSVEDESTELEEIGQKIVAKCKGLPIAIKTIGS 116 (820)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~ 116 (820)
++-...-. ..--++++.-|++.++|-|=++.-+..
T Consensus 287 ~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 287 EIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 77322110 012256788899999998876665543
No 133
>COG3899 Predicted ATPase [General function prediction only]
Probab=77.39 E-value=19 Score=42.83 Aligned_cols=169 Identities=17% Similarity=0.163 Sum_probs=103.8
Q ss_pred HHHHc-CCceEEEEEeCCCCCChhhHHHHHhhccCCCC----CcE--EEEecCch-HHHhhh-CCCCeEeCCCCChHhHH
Q 003435 5 LEVYW-RGRGFLIVLDDVWDEDGENMEKALSWLNVGGS----GSC--VLVTTRSG-RVASMM-GTVPTQHLTCLSSEDSW 75 (820)
Q Consensus 5 l~~~l-~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~----gs~--iiiTtr~~-~~~~~~-~~~~~~~l~~l~~~~a~ 75 (820)
++... ++|+..+|+||+.-.+....+-+.......+. ... .+.|.+.. ...... ..-..+.+.||+..+..
T Consensus 146 i~~~~~~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~ 225 (849)
T COG3899 146 IQVFTAEEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTN 225 (849)
T ss_pred HHHHHhccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHH
Confidence 33344 45699999999943343444433333222210 112 23333332 222222 22258999999999999
Q ss_pred HHHHHHhcCCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhccCC-------HHHHHHhhhcchhchhccCcchhhHH
Q 003435 76 VLFKHFAFGSVEDESTELEEIGQKIVAKCKGLPIAIKTIGSILRSKD-------KEEWLSVADCDLWTLLEFKSHVLPVL 148 (820)
Q Consensus 76 ~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~k~-------~~~w~~~~~~~~~~~~~~~~~i~~~l 148 (820)
.+.......... ...+.+..|+++-+|.|+-+.-+-..+.... ...|+.=.. ........ +.+.+.+
T Consensus 226 ~lV~~~l~~~~~----~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~-~i~~~~~~-~~vv~~l 299 (849)
T COG3899 226 QLVAATLGCTKL----LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIA-SLGILATT-DAVVEFL 299 (849)
T ss_pred HHHHHHhCCccc----ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHH-hcCCchhh-HHHHHHH
Confidence 999887644322 2345678999999999999999999997763 334432111 11111111 2266678
Q ss_pred HhhhcCCChhHHHHHhhhcCCCCCcccCHHHHH
Q 003435 149 KRSYDNLPWHLKQCFAYCSIFPKDYWINKEKLV 181 (820)
Q Consensus 149 ~~sy~~L~~~~k~~fl~~a~f~~~~~i~~~~li 181 (820)
..-.+.||...|...-..||+.... +.+.+-
T Consensus 300 ~~rl~kL~~~t~~Vl~~AA~iG~~F--~l~~La 330 (849)
T COG3899 300 AARLQKLPGTTREVLKAAACIGNRF--DLDTLA 330 (849)
T ss_pred HHHHhcCCHHHHHHHHHHHHhCccC--CHHHHH
Confidence 8889999999999999999987654 444443
No 134
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=77.09 E-value=51 Score=34.04 Aligned_cols=98 Identities=15% Similarity=0.115 Sum_probs=63.3
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCc-hHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCC
Q 003435 10 RGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRS-GRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVE 87 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~ 87 (820)
.+++-++|+|++.........++...+-... .+.+|++|.+ ..+.... .....++++++++++..+.+.......
T Consensus 122 ~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~-- 198 (314)
T PRK07399 122 EAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE-- 198 (314)
T ss_pred cCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc--
Confidence 4667789999997776677777777765444 3455555544 3333321 122389999999999999998764211
Q ss_pred CCChhHHHHHHHHHHHhcCChHHHHHH
Q 003435 88 DESTELEEIGQKIVAKCKGLPIAIKTI 114 (820)
Q Consensus 88 ~~~~~~~~~~~~i~~~c~glPlal~~~ 114 (820)
........++..++|-|......
T Consensus 199 ----~~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 199 ----ILNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred ----cchhHHHHHHHHcCCCHHHHHHH
Confidence 11111357899999999655443
No 135
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=76.97 E-value=0.6 Score=26.70 Aligned_cols=13 Identities=46% Similarity=0.575 Sum_probs=4.9
Q ss_pred cccEEeccCcccc
Q 003435 328 HLRYLDLSHTYIR 340 (820)
Q Consensus 328 ~L~~L~Ls~n~i~ 340 (820)
+|++|+|++|.|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444444444443
No 136
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.75 E-value=18 Score=41.05 Aligned_cols=98 Identities=11% Similarity=0.044 Sum_probs=64.8
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCc-hHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRS-GRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
++.-++|||+|..-..+.++.+...+.......++|++|.+ +.+.... ..-..++++.++.++..+.+.+.+.....
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi- 201 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV- 201 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC-
Confidence 45568899999887777888888777654456666655544 3333221 11247999999999998888876533211
Q ss_pred CChhHHHHHHHHHHHhcCChHHH
Q 003435 89 ESTELEEIGQKIVAKCKGLPIAI 111 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glPlal 111 (820)
.-..+....+++.++|-+--+
T Consensus 202 --~ie~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 202 --PAEPQALRLLARAARGSMRDA 222 (618)
T ss_pred --CCCHHHHHHHHHHcCCCHHHH
Confidence 112456788889999866433
No 137
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.71 E-value=12 Score=40.40 Aligned_cols=101 Identities=13% Similarity=0.056 Sum_probs=65.2
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEec-CchHHHhhhC-CCCeEeCCCCChHhHHHHHHHHhcCCCC
Q 003435 10 RGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTT-RSGRVASMMG-TVPTQHLTCLSSEDSWVLFKHFAFGSVE 87 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTt-r~~~~~~~~~-~~~~~~l~~l~~~~a~~Lf~~~~~~~~~ 87 (820)
.+++-++|+|++..-..++++.+...+....+.+.+|++| +-+.+..... ....++++++++++..+.+...+-....
T Consensus 125 ~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~ 204 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI 204 (397)
T ss_pred cCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC
Confidence 3456688999997766667888887776555677766555 4344433211 1127899999999988888776522111
Q ss_pred CCChhHHHHHHHHHHHhcCChH-HHHH
Q 003435 88 DESTELEEIGQKIVAKCKGLPI-AIKT 113 (820)
Q Consensus 88 ~~~~~~~~~~~~i~~~c~glPl-al~~ 113 (820)
.--.+.+..+++.++|-+- |+..
T Consensus 205 ---~i~~~al~~l~~~s~g~lr~a~~~ 228 (397)
T PRK14955 205 ---SVDADALQLIGRKAQGSMRDAQSI 228 (397)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1124568889999999764 4443
No 138
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.54 E-value=18 Score=40.75 Aligned_cols=106 Identities=14% Similarity=0.101 Sum_probs=69.5
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCc-hHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCC
Q 003435 10 RGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRS-GRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVE 87 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~ 87 (820)
.+++-+||+|++..-..+.+..+...+........+|++|.+ +.+.... ..-..++++.++.++..+.+...+.....
T Consensus 117 ~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi 196 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV 196 (624)
T ss_pred cCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC
Confidence 456679999999776667777877776543345666665655 4443221 11137899999999999888776543211
Q ss_pred CCChhHHHHHHHHHHHhcCC-hHHHHHHHHhh
Q 003435 88 DESTELEEIGQKIVAKCKGL-PIAIKTIGSIL 118 (820)
Q Consensus 88 ~~~~~~~~~~~~i~~~c~gl-Plal~~~~~~l 118 (820)
. --.+.+..+++.++|- --|+..+...+
T Consensus 197 ~---id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 197 D---YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred C---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1 1235678888899985 47777776544
No 139
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=74.81 E-value=17 Score=37.75 Aligned_cols=97 Identities=8% Similarity=0.015 Sum_probs=60.1
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCc-hHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRS-GRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
..+-+||+|++..-..+....+...+......+++|+++.. +++.... .....++++++++++........+......
T Consensus 101 ~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~ 180 (319)
T PRK00440 101 APFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIE 180 (319)
T ss_pred CCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCC
Confidence 34568999999654444555666555544556778877643 2221110 111268999999999988888766432211
Q ss_pred CChhHHHHHHHHHHHhcCChHH
Q 003435 89 ESTELEEIGQKIVAKCKGLPIA 110 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glPla 110 (820)
. -.+.+..+++.++|-+--
T Consensus 181 i---~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 181 I---TDDALEAIYYVSEGDMRK 199 (319)
T ss_pred C---CHHHHHHHHHHcCCCHHH
Confidence 1 234678888999987654
No 140
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.97 E-value=20 Score=40.11 Aligned_cols=100 Identities=14% Similarity=0.058 Sum_probs=65.2
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCch-HHH----hhhCCCCeEeCCCCChHhHHHHHHHHhcC
Q 003435 10 RGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSG-RVA----SMMGTVPTQHLTCLSSEDSWVLFKHFAFG 84 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~-~~~----~~~~~~~~~~l~~l~~~~a~~Lf~~~~~~ 84 (820)
.+++-++|+|++..-..+....+...+-.....+.+|++|.+. .+. ..| ..++++.++.++..+.+.+.+-.
T Consensus 117 ~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc---~~~~f~~l~~~~i~~~L~~il~~ 193 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRC---LQFNLKQMPPPLIVSHLQHILEQ 193 (527)
T ss_pred cCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHH---HHHhcCCCCHHHHHHHHHHHHHH
Confidence 3566799999997766667777777776555567777666543 222 222 37999999999988877765532
Q ss_pred CCCCCChhHHHHHHHHHHHhcCChH-HHHHHH
Q 003435 85 SVEDESTELEEIGQKIVAKCKGLPI-AIKTIG 115 (820)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~~c~glPl-al~~~~ 115 (820)
. . ..-..+.+..+++.++|-+- |+..+-
T Consensus 194 e-g--i~~~~~al~~la~~s~Gslr~al~lld 222 (527)
T PRK14969 194 E-N--IPFDATALQLLARAAAGSMRDALSLLD 222 (527)
T ss_pred c-C--CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1 1 11223556888999999664 444443
No 141
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=71.47 E-value=25 Score=37.73 Aligned_cols=64 Identities=28% Similarity=0.227 Sum_probs=49.2
Q ss_pred ceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchHHHhhh------CCCCeEeCCCCChHhHHHHH
Q 003435 12 RGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGRVASMM------GTVPTQHLTCLSSEDSWVLF 78 (820)
Q Consensus 12 ~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~~~~~~------~~~~~~~l~~l~~~~a~~Lf 78 (820)
++..|+||.|.. ..+|+.....+.+.++. +|++|+-+..+.... |....+++.||+..|-..+-
T Consensus 94 ~~~yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 94 EKSYIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred CCceEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 678999999954 47899988888887777 899999886654432 33358999999998876643
No 142
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=71.41 E-value=50 Score=36.19 Aligned_cols=102 Identities=15% Similarity=0.058 Sum_probs=63.7
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCc-hHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRS-GRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
+++-++|+|++..-..+..+.+...+.....+..+|++|.. +.+.... .....++++.+++++..+.+...+-+...
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~- 198 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI- 198 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 56678899999665555666677666554456667766643 3332211 11237999999999988888776532111
Q ss_pred CChhHHHHHHHHHHHhcCCh-HHHHHHH
Q 003435 89 ESTELEEIGQKIVAKCKGLP-IAIKTIG 115 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glP-lal~~~~ 115 (820)
.--++.+..+++.++|-+ .|+..+-
T Consensus 199 --~i~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 199 --ETSREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred --CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 112456788999999855 4444443
No 143
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=71.30 E-value=41 Score=37.44 Aligned_cols=99 Identities=11% Similarity=0.018 Sum_probs=66.0
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCch-HHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSG-RVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~-~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
+++-++|+|++..-..+..+.+...+-...+.+++|++|.+. .+.... .....+++++++.++..+.+.+.+-....
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi- 194 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV- 194 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC-
Confidence 456688999998776777788877776555677777777663 221111 11237999999999988888766532211
Q ss_pred CChhHHHHHHHHHHHhcCChHHHH
Q 003435 89 ESTELEEIGQKIVAKCKGLPIAIK 112 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glPlal~ 112 (820)
.--.+.+..+++.++|-+--+.
T Consensus 195 --~i~~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 195 --SYEPEALEILARSGNGSLRDTL 216 (535)
T ss_pred --CCCHHHHHHHHHHcCCcHHHHH
Confidence 1124567889999999884433
No 144
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.75 E-value=29 Score=37.80 Aligned_cols=96 Identities=10% Similarity=-0.017 Sum_probs=63.5
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCc-hHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCC
Q 003435 10 RGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRS-GRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVE 87 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~ 87 (820)
.++.-++|+|+|..-..+.++++...+-........|++|.+ ..+.... ..-..|.++.++.++..+.+.+.+-....
T Consensus 119 ~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi 198 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV 198 (484)
T ss_pred cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC
Confidence 456679999999887778888888777544345555545544 4433221 11136999999999988888776532211
Q ss_pred CCChhHHHHHHHHHHHhcCCh
Q 003435 88 DESTELEEIGQKIVAKCKGLP 108 (820)
Q Consensus 88 ~~~~~~~~~~~~i~~~c~glP 108 (820)
.--.+....|++.++|-+
T Consensus 199 ---~~e~eAL~~Ia~~S~Gd~ 216 (484)
T PRK14956 199 ---QYDQEGLFWIAKKGDGSV 216 (484)
T ss_pred ---CCCHHHHHHHHHHcCChH
Confidence 123456788999999987
No 145
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.17 E-value=30 Score=38.71 Aligned_cols=103 Identities=17% Similarity=0.116 Sum_probs=66.3
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCc-hHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCC
Q 003435 10 RGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRS-GRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVE 87 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~ 87 (820)
.+++-++|+|++..-..+.++.+...+-.....+++|++|.+ +.+.... ..-..+++++++.++..+.+.+.+-.. .
T Consensus 117 ~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~e-g 195 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKE-N 195 (546)
T ss_pred cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHc-C
Confidence 456679999999776667788888777655456666654444 4343221 112489999999999887777654221 1
Q ss_pred CCChhHHHHHHHHHHHhcCCh-HHHHHHH
Q 003435 88 DESTELEEIGQKIVAKCKGLP-IAIKTIG 115 (820)
Q Consensus 88 ~~~~~~~~~~~~i~~~c~glP-lal~~~~ 115 (820)
..--.+....+++.++|-+ -|+..+-
T Consensus 196 --i~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 196 --INSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred --CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1223455678889999855 4555544
No 146
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.95 E-value=41 Score=35.77 Aligned_cols=96 Identities=11% Similarity=0.084 Sum_probs=59.1
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecC-chHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTR-SGRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr-~~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
+++-+||+|++..-....++.+...+......+.+|++|. .+.+.... .....++++++++++....+...+....-.
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~ 186 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK 186 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC
Confidence 4555799999966555567777665544344556665553 33332211 112379999999999888887766432211
Q ss_pred CChhHHHHHHHHHHHhcCChH
Q 003435 89 ESTELEEIGQKIVAKCKGLPI 109 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glPl 109 (820)
. -.+.+..+++.++|-+-
T Consensus 187 i---~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 187 F---EDDALHIIAQKADGALR 204 (367)
T ss_pred C---CHHHHHHHHHhCCCCHH
Confidence 1 24567888888988554
No 147
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=68.93 E-value=50 Score=37.56 Aligned_cols=100 Identities=12% Similarity=0.018 Sum_probs=64.8
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEec-CchHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTT-RSGRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTt-r~~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
+++-++|+|++..-.....+.+...+-....++++|++| ..+++.... ..-..++++.++.++..+.+.+.+-.....
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~ 210 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE 210 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 445578999997766566777777765555667776555 444443321 111379999999999999988765322111
Q ss_pred CChhHHHHHHHHHHHhcCChHHHHH
Q 003435 89 ESTELEEIGQKIVAKCKGLPIAIKT 113 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glPlal~~ 113 (820)
--.+.+..+++.++|-+--+..
T Consensus 211 ---i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 211 ---VEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHH
Confidence 1235678889999998754443
No 148
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=67.98 E-value=90 Score=32.26 Aligned_cols=93 Identities=13% Similarity=0.097 Sum_probs=63.6
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCch-HHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSG-RVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~-~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
+++=++|+|++.....+...++...+-.-.+++.+|++|.+. .+.... ..-..+.+.+++++++.+.+.... .+
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~---~~- 182 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG---IT- 182 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC---Cc-
Confidence 445578899998877778888887775555677777666653 343321 112379999999999999886531 11
Q ss_pred CChhHHHHHHHHHHHhcCChHHHHHH
Q 003435 89 ESTELEEIGQKIVAKCKGLPIAIKTI 114 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glPlal~~~ 114 (820)
.+..+++.++|-|+...-+
T Consensus 183 -------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 183 -------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred -------hHHHHHHHcCCCHHHHHHH
Confidence 1356789999999866544
No 149
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=66.71 E-value=59 Score=38.54 Aligned_cols=97 Identities=7% Similarity=0.021 Sum_probs=64.3
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecC-chHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCC
Q 003435 10 RGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTR-SGRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVE 87 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr-~~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~ 87 (820)
.+++-++|||++.....+.++.+...+......+.+|++|. ..++.... .....|+++.++.++..+.+.+..-.. .
T Consensus 118 ~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~E-G 196 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQE-G 196 (824)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHc-C
Confidence 45566789999988777888888888866556666665554 34444321 122479999999998888887654221 1
Q ss_pred CCChhHHHHHHHHHHHhcCChH
Q 003435 88 DESTELEEIGQKIVAKCKGLPI 109 (820)
Q Consensus 88 ~~~~~~~~~~~~i~~~c~glPl 109 (820)
..--.+....+++.++|-+-
T Consensus 197 --v~id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 197 --VPVEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred --CCCCHHHHHHHHHHcCCCHH
Confidence 11123456788999999774
No 150
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=66.32 E-value=2.8 Score=24.48 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=12.6
Q ss_pred CCCcceEEEeCCchhhH
Q 003435 755 LGQLQRLVIKKCPQLER 771 (820)
Q Consensus 755 l~~L~~L~l~~~~~L~~ 771 (820)
+++|+.|++++|+.++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46788888888877763
No 151
>PRK04195 replication factor C large subunit; Provisional
Probab=66.07 E-value=1.3e+02 Score=33.34 Aligned_cols=163 Identities=12% Similarity=0.055 Sum_probs=85.7
Q ss_pred ceEEEEEeCCCCCCh----hhHHHHHhhccCCCCCcEEEEecCchH-HHh-h-hCCCCeEeCCCCChHhHHHHHHHHhcC
Q 003435 12 RGFLIVLDDVWDEDG----ENMEKALSWLNVGGSGSCVLVTTRSGR-VAS-M-MGTVPTQHLTCLSSEDSWVLFKHFAFG 84 (820)
Q Consensus 12 ~~~llvlDdv~~~~~----~~~~~~~~~~~~~~~gs~iiiTtr~~~-~~~-~-~~~~~~~~l~~l~~~~a~~Lf~~~~~~ 84 (820)
++-+||+|+++.-.. ..+..+...... .+..||+|+.+.. ... . ......+++++++.++....+...+..
T Consensus 98 ~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~ 175 (482)
T PRK04195 98 RRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRK 175 (482)
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHH
Confidence 678999999976321 345555555542 3445777775421 111 0 111237999999999988888776633
Q ss_pred CCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhc-cCC---HHHHHHhhhcchhchhccCcchhhHHHhhhcC-CChhH
Q 003435 85 SVEDESTELEEIGQKIVAKCKGLPIAIKTIGSILR-SKD---KEEWLSVADCDLWTLLEFKSHVLPVLKRSYDN-LPWHL 159 (820)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~-~k~---~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~-L~~~~ 159 (820)
..... -.++...|++.++|-.-++......+. ++. .+....+.. ......++.++..-+.. -....
T Consensus 176 egi~i---~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~------~d~~~~if~~l~~i~~~k~~~~a 246 (482)
T PRK04195 176 EGIEC---DDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR------RDREESIFDALDAVFKARNADQA 246 (482)
T ss_pred cCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc------CCCCCCHHHHHHHHHCCCCHHHH
Confidence 22222 245678889999886544443333332 222 222221211 11123466666655542 22233
Q ss_pred HHHHhhhcCCCCCcccCHHHHHHHHHHcCCcccC
Q 003435 160 KQCFAYCSIFPKDYWINKEKLVRLWVAEGFIRLD 193 (820)
Q Consensus 160 k~~fl~~a~f~~~~~i~~~~li~~w~~~gl~~~~ 193 (820)
...+..+. ++. +.+-.|+.+.+....
T Consensus 247 ~~~~~~~~-------~~~-~~i~~~l~en~~~~~ 272 (482)
T PRK04195 247 LEASYDVD-------EDP-DDLIEWIDENIPKEY 272 (482)
T ss_pred HHHHHccc-------CCH-HHHHHHHHhcccccc
Confidence 33332211 122 347789999987643
No 152
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.79 E-value=31 Score=37.93 Aligned_cols=96 Identities=11% Similarity=0.050 Sum_probs=64.8
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCc-hHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRS-GRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
+++-++|+|++..-..+..+.+...+-...+.+++|++|.+ +++.... ..-..+++++++.++..+.+.+.+.....
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi- 193 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI- 193 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC-
Confidence 55668999999766666777887777665567777765543 4444322 11237999999999999988887643221
Q ss_pred CChhHHHHHHHHHHHhcCChH
Q 003435 89 ESTELEEIGQKIVAKCKGLPI 109 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glPl 109 (820)
.--++.+..|++.++|-+-
T Consensus 194 --~i~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 194 --EHDEESLKLIAENSSGSMR 212 (491)
T ss_pred --CCCHHHHHHHHHHcCCCHH
Confidence 1124557788999988764
No 153
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=65.59 E-value=33 Score=39.13 Aligned_cols=102 Identities=17% Similarity=0.126 Sum_probs=66.8
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCc-hHHHhh-hCCCCeEeCCCCChHhHHHHHHHHhcCCCC
Q 003435 10 RGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRS-GRVASM-MGTVPTQHLTCLSSEDSWVLFKHFAFGSVE 87 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~-~~~~~~-~~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~ 87 (820)
.+++-++|||++..-..+..+.+...+-......++|++|.+ +.+... ......|++++++.++..+.+.+.+-.. .
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e-~ 195 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAE-Q 195 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHc-C
Confidence 466779999999877767788887777554456666655555 444321 1112489999999999998887755221 1
Q ss_pred CCChhHHHHHHHHHHHhcCChH-HHHHH
Q 003435 88 DESTELEEIGQKIVAKCKGLPI-AIKTI 114 (820)
Q Consensus 88 ~~~~~~~~~~~~i~~~c~glPl-al~~~ 114 (820)
..-..+....|++.++|-+- |+..+
T Consensus 196 --i~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 196 --IPFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred --CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 11224556788999999775 44443
No 154
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=65.07 E-value=46 Score=34.70 Aligned_cols=93 Identities=13% Similarity=0.094 Sum_probs=63.2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCc-hHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRS-GRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
+++=++|+|+++....+.-..+...+-.-.+++.+|++|.+ ..+.... ..-..+.+.+++.+++.+.+.... +.
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~--~~-- 182 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV--TM-- 182 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc--CC--
Confidence 56678899999887777778888777555567777777766 3343221 111268999999999988886542 11
Q ss_pred CChhHHHHHHHHHHHhcCChHHH
Q 003435 89 ESTELEEIGQKIVAKCKGLPIAI 111 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glPlal 111 (820)
. .+-+..++..++|-|...
T Consensus 183 -~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 183 -S---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred -C---HHHHHHHHHHcCCCHHHH
Confidence 1 123678899999999543
No 155
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.74 E-value=57 Score=36.36 Aligned_cols=97 Identities=14% Similarity=0.073 Sum_probs=61.5
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCc-hHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRS-GRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
++.-++|+|+|..-..+..+.+...+......+++|++|.+ +++.... ..-..+++++++.++..+.+.+.+-....
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi- 196 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV- 196 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC-
Confidence 56668999999876667778777777655557777766555 3332221 11136889999988877766555422211
Q ss_pred CChhHHHHHHHHHHHhcCChHH
Q 003435 89 ESTELEEIGQKIVAKCKGLPIA 110 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glPla 110 (820)
+-..+....+++.++|-+--
T Consensus 197 --~~~~~al~~ia~~s~GslR~ 216 (509)
T PRK14958 197 --EFENAALDLLARAANGSVRD 216 (509)
T ss_pred --CCCHHHHHHHHHHcCCcHHH
Confidence 11234567888899987743
No 156
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=64.69 E-value=23 Score=41.24 Aligned_cols=94 Identities=20% Similarity=0.288 Sum_probs=55.0
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEe--cCchH--HHhh-hCCCCeEeCCCCChHhHHHHHHHHhcCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVT--TRSGR--VASM-MGTVPTQHLTCLSSEDSWVLFKHFAFGS 85 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiT--tr~~~--~~~~-~~~~~~~~l~~l~~~~a~~Lf~~~~~~~ 85 (820)
+++.+||||||+.-....++.+.... ..|+.|+|+ |.+.. +... ......+++++++.++...++.+.+-..
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~ 184 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDK 184 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHH
Confidence 46779999999765445566665444 346655553 43321 1111 1112479999999999999998765310
Q ss_pred C----CCCChhHHHHHHHHHHHhcCC
Q 003435 86 V----EDESTELEEIGQKIVAKCKGL 107 (820)
Q Consensus 86 ~----~~~~~~~~~~~~~i~~~c~gl 107 (820)
. .....--++....+++.+.|-
T Consensus 185 ~~~~g~~~v~I~deaL~~La~~s~GD 210 (725)
T PRK13341 185 ERGYGDRKVDLEPEAEKHLVDVANGD 210 (725)
T ss_pred HhhcCCcccCCCHHHHHHHHHhCCCC
Confidence 0 001111245567788888774
No 157
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=64.03 E-value=71 Score=33.12 Aligned_cols=91 Identities=8% Similarity=0.011 Sum_probs=63.3
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCch-HHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSG-RVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~-~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
+++=++|+|+++....+...++...+-.-.+++.+|++|.+. .+.... ..-..+.+.+++++++.+.+...+. .
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~-~--- 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS-A--- 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc-c---
Confidence 566678899998877778888887776555677777777664 333221 1113799999999999988877541 1
Q ss_pred CChhHHHHHHHHHHHhcCChH
Q 003435 89 ESTELEEIGQKIVAKCKGLPI 109 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glPl 109 (820)
+ ...+...+..++|-|.
T Consensus 182 --~--~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 182 --E--ISEILTALRINYGRPL 198 (325)
T ss_pred --C--hHHHHHHHHHcCCCHH
Confidence 1 1125677889999995
No 158
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=63.82 E-value=82 Score=36.48 Aligned_cols=102 Identities=11% Similarity=0.037 Sum_probs=65.1
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEE-EecCchHHHhh-hCCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVL-VTTRSGRVASM-MGTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~ii-iTtr~~~~~~~-~~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
+++-++|+|++..-..+.+.++...+-.......+| +||+.+.+... ......+++.+++.++..+.+...+-+...
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI- 195 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENI- 195 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC-
Confidence 566688999997766677888877765444455555 55544554432 111237999999999988888775432211
Q ss_pred CChhHHHHHHHHHHHhcCCh-HHHHHHH
Q 003435 89 ESTELEEIGQKIVAKCKGLP-IAIKTIG 115 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glP-lal~~~~ 115 (820)
.-..+.++.+++.++|-+ .|+..+.
T Consensus 196 --~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 196 --SYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred --CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 112345788999998865 4554443
No 159
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=63.46 E-value=60 Score=33.92 Aligned_cols=93 Identities=16% Similarity=0.209 Sum_probs=62.6
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCc-hHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRS-GRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
+++=++|+|+++....+.+..+...+-.-.+++.+|++|.+ ..+.... ..-..+.+++++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 44558889999888888888888887665667776666655 4433221 112479999999999998887641 1
Q ss_pred CChhHHHHHHHHHHHhcCChHHHHHH
Q 003435 89 ESTELEEIGQKIVAKCKGLPIAIKTI 114 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glPlal~~~ 114 (820)
+. ...++..++|-|.....+
T Consensus 206 --~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 --AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred --Ch----HHHHHHHcCCCHHHHHHH
Confidence 11 123577889999644433
No 160
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.16 E-value=47 Score=37.99 Aligned_cols=96 Identities=15% Similarity=0.063 Sum_probs=63.3
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEec-CchHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTT-RSGRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTt-r~~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
+++=++|+|++..-..+.++.+...+.....++.+|++| +.+.+.... .....+++++++.++....+...+-...-
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi- 198 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI- 198 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC-
Confidence 445578999997766677888887776555566766555 444444321 11237999999999998888776532211
Q ss_pred CChhHHHHHHHHHHHhcCChH
Q 003435 89 ESTELEEIGQKIVAKCKGLPI 109 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glPl 109 (820)
.--.+.+..+++.++|-.-
T Consensus 199 --~i~~~al~~La~~s~gdlr 217 (614)
T PRK14971 199 --TAEPEALNVIAQKADGGMR 217 (614)
T ss_pred --CCCHHHHHHHHHHcCCCHH
Confidence 1123467888999998654
No 161
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.24 E-value=1.1e+02 Score=35.19 Aligned_cols=101 Identities=12% Similarity=0.048 Sum_probs=63.8
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCc-hHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRS-GRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
+++-++|+|++..-..+.++.+...+-.......+|++|.+ +.+.... ..-..+++..++.++..+.+.+.+.+....
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~ 199 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE 199 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 45668899999776667788887777654445555655544 3332221 112368888999988888777765432111
Q ss_pred CChhHHHHHHHHHHHhcCChHHHHHH
Q 003435 89 ESTELEEIGQKIVAKCKGLPIAIKTI 114 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glPlal~~~ 114 (820)
. -.+.+..+++.++|-+-.+..+
T Consensus 200 i---s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 200 I---EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 1 1245788999999987544433
No 162
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=60.59 E-value=5.9 Score=23.68 Aligned_cols=14 Identities=43% Similarity=0.513 Sum_probs=8.2
Q ss_pred ccccEEeccCcccc
Q 003435 327 KHLRYLDLSHTYIR 340 (820)
Q Consensus 327 ~~L~~L~Ls~n~i~ 340 (820)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666554
No 163
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=60.46 E-value=52 Score=33.43 Aligned_cols=71 Identities=14% Similarity=0.164 Sum_probs=44.0
Q ss_pred ceEEEEEeCCCCC---------ChhhHHHHHhhccCCCCCcEEEEecCchHHHhhhC--------CCCeEeCCCCChHhH
Q 003435 12 RGFLIVLDDVWDE---------DGENMEKALSWLNVGGSGSCVLVTTRSGRVASMMG--------TVPTQHLTCLSSEDS 74 (820)
Q Consensus 12 ~~~llvlDdv~~~---------~~~~~~~~~~~~~~~~~gs~iiiTtr~~~~~~~~~--------~~~~~~l~~l~~~~a 74 (820)
..-+|+||++..- ..+.++.+.........+-+||+++.....-.... ....+++++++.+|-
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl 200 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAEL 200 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHH
Confidence 3478999999521 12334455555554455667777765432221111 123799999999999
Q ss_pred HHHHHHHh
Q 003435 75 WVLFKHFA 82 (820)
Q Consensus 75 ~~Lf~~~~ 82 (820)
.+++...+
T Consensus 201 ~~I~~~~l 208 (284)
T TIGR02880 201 LVIAGLML 208 (284)
T ss_pred HHHHHHHH
Confidence 99998865
No 164
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=60.00 E-value=44 Score=35.58 Aligned_cols=101 Identities=15% Similarity=0.122 Sum_probs=59.6
Q ss_pred eEEEEEeCCCCCC-hhhHH----HHHhhccCCCCCcEEEEecCc---------hHHHhhhCCCCeEeCCCCChHhHHHHH
Q 003435 13 GFLIVLDDVWDED-GENME----KALSWLNVGGSGSCVLVTTRS---------GRVASMMGTVPTQHLTCLSSEDSWVLF 78 (820)
Q Consensus 13 ~~llvlDdv~~~~-~~~~~----~~~~~~~~~~~gs~iiiTtr~---------~~~~~~~~~~~~~~l~~l~~~~a~~Lf 78 (820)
-=++++||++--. .+.|+ .+...+. ..|-.||+|++. ..+..++++.-++++.+.+.+.....+
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~--~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALL--ENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHH--hcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHH
Confidence 3488999996521 12232 2333333 234489999955 345555666668999999999999999
Q ss_pred HHHhcCCCC-CCChhHHHHHHHHHHHhcCChHHHHHHH
Q 003435 79 KHFAFGSVE-DESTELEEIGQKIVAKCKGLPIAIKTIG 115 (820)
Q Consensus 79 ~~~~~~~~~-~~~~~~~~~~~~i~~~c~glPlal~~~~ 115 (820)
.+++-...- .+.+...-+|..+-+-..-+.-|+..+.
T Consensus 254 ~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~ 291 (408)
T COG0593 254 RKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLD 291 (408)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 887643322 2333344455555444455555654443
No 165
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.67 E-value=45 Score=36.70 Aligned_cols=105 Identities=16% Similarity=0.130 Sum_probs=63.7
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCc-hHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCC
Q 003435 10 RGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRS-GRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVE 87 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~ 87 (820)
.+++-++|+|++..-..+..+.+...+........+|++|.+ ..+.... .....+++++++.++....+.+.+.....
T Consensus 115 ~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi 194 (472)
T PRK14962 115 EGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI 194 (472)
T ss_pred cCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC
Confidence 356679999999654445556666666544344544444433 3333322 11238999999999988888776632211
Q ss_pred CCChhHHHHHHHHHHHhc-CChHHHHHHHHh
Q 003435 88 DESTELEEIGQKIVAKCK-GLPIAIKTIGSI 117 (820)
Q Consensus 88 ~~~~~~~~~~~~i~~~c~-glPlal~~~~~~ 117 (820)
. --++....+++.++ +++.|+..+...
T Consensus 195 ~---i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 195 E---IDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred C---CCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 1 12345677888775 467777777653
No 166
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.17 E-value=52 Score=37.50 Aligned_cols=100 Identities=12% Similarity=0.062 Sum_probs=62.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEec-CchHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTT-RSGRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTt-r~~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
+++-++|+|++..-..+..+.+...+-.....+.+|++| +-+.+.... .....+++.+++.++....+.+.+-.....
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~ 205 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ 205 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 445578999997766667777777776544556655544 444444321 222479999999999887777654321111
Q ss_pred CChhHHHHHHHHHHHhcCCh-HHHHH
Q 003435 89 ESTELEEIGQKIVAKCKGLP-IAIKT 113 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glP-lal~~ 113 (820)
--.+.+..+++.++|-. .|+..
T Consensus 206 ---I~~eal~~La~~s~Gdlr~al~e 228 (620)
T PRK14954 206 ---IDADALQLIARKAQGSMRDAQSI 228 (620)
T ss_pred ---CCHHHHHHHHHHhCCCHHHHHHH
Confidence 12456788999999944 44443
No 167
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.40 E-value=89 Score=35.67 Aligned_cols=101 Identities=12% Similarity=0.061 Sum_probs=65.2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCc-hHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRS-GRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
+++-++|+|++..-..+..+.+...+......+.+|++|.+ +.+.... .....++++.++.++....+.+.+......
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~ 198 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN 198 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 55678999999765556677777766554456677666644 3333221 111368899999998888887766432211
Q ss_pred CChhHHHHHHHHHHHhcCChHHHHHH
Q 003435 89 ESTELEEIGQKIVAKCKGLPIAIKTI 114 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glPlal~~~ 114 (820)
. -.+.+..+++.++|-+-.+.-.
T Consensus 199 i---~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 199 L---EPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 1 2356788999999988644443
No 168
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=57.71 E-value=1.3e+02 Score=33.93 Aligned_cols=99 Identities=13% Similarity=0.099 Sum_probs=64.1
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCc-hHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCC
Q 003435 10 RGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRS-GRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVE 87 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~ 87 (820)
.+++-++|+|++..-..+.++.+...+....+.+.+|++|.+ +.+.... ..-..+++++++.++..+.+...+.....
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi 196 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI 196 (563)
T ss_pred cCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 456668999999776667788887777654556666666544 3333221 11136899999999988888776532211
Q ss_pred CCChhHHHHHHHHHHHhcCChHHH
Q 003435 88 DESTELEEIGQKIVAKCKGLPIAI 111 (820)
Q Consensus 88 ~~~~~~~~~~~~i~~~c~glPlal 111 (820)
+--.+.+..+++.++|-+-.+
T Consensus 197 ---~id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 197 ---KYEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHH
Confidence 112456777888999977433
No 169
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=57.71 E-value=63 Score=36.52 Aligned_cols=91 Identities=10% Similarity=0.091 Sum_probs=54.1
Q ss_pred EEEEEeCCCCCCh-hhHHH-HHhhccC-CCCCcEEEEecCc---------hHHHhhhCCCCeEeCCCCChHhHHHHHHHH
Q 003435 14 FLIVLDDVWDEDG-ENMEK-ALSWLNV-GGSGSCVLVTTRS---------GRVASMMGTVPTQHLTCLSSEDSWVLFKHF 81 (820)
Q Consensus 14 ~llvlDdv~~~~~-~~~~~-~~~~~~~-~~~gs~iiiTtr~---------~~~~~~~~~~~~~~l~~l~~~~a~~Lf~~~ 81 (820)
=+|||||+..... +.|+. +...+.. ...|..|||||+. +.+...+.+.-+++++..+.+.-..++.++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 3788999965322 23332 2222211 1345678888875 223344555558999999999999999888
Q ss_pred hcCCCCCCChhHHHHHHHHHHHhcCC
Q 003435 82 AFGSVEDESTELEEIGQKIVAKCKGL 107 (820)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~~c~gl 107 (820)
+-...-.. -++++.-|++++.+-
T Consensus 459 a~~r~l~l---~~eVi~yLa~r~~rn 481 (617)
T PRK14086 459 AVQEQLNA---PPEVLEFIASRISRN 481 (617)
T ss_pred HHhcCCCC---CHHHHHHHHHhccCC
Confidence 74332211 235566666666544
No 170
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=56.99 E-value=85 Score=35.47 Aligned_cols=102 Identities=11% Similarity=0.054 Sum_probs=64.1
Q ss_pred ceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecC-chHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCCC
Q 003435 12 RGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTR-SGRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVEDE 89 (820)
Q Consensus 12 ~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr-~~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~~ 89 (820)
++=++|+|++..-..+++..+...+.....+..+|++|. -+.+.... .....+++.++++++....+...+-+.....
T Consensus 119 ~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I 198 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI 198 (605)
T ss_pred CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC
Confidence 334699999977666777887777654445566665554 33443221 1123799999999999888877653321111
Q ss_pred ChhHHHHHHHHHHHhcCCh-HHHHHHHH
Q 003435 90 STELEEIGQKIVAKCKGLP-IAIKTIGS 116 (820)
Q Consensus 90 ~~~~~~~~~~i~~~c~glP-lal~~~~~ 116 (820)
-.+.+..+++.++|-+ -|+..+-.
T Consensus 199 ---s~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 199 ---EDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred ---CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 1345788899999955 45555443
No 171
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.54 E-value=5.9 Score=42.83 Aligned_cols=12 Identities=17% Similarity=0.160 Sum_probs=5.9
Q ss_pred CCCccEEEEccC
Q 003435 659 LNSLVKLTVNEC 670 (820)
Q Consensus 659 l~~L~~L~L~~n 670 (820)
.|+|+.|+|++|
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 344555555554
No 172
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.80 E-value=1.5e+02 Score=32.86 Aligned_cols=100 Identities=10% Similarity=0.047 Sum_probs=62.1
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEec-CchHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCC
Q 003435 10 RGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTT-RSGRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVE 87 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTt-r~~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~ 87 (820)
.+++-++|+|++..-..+..+.+...+....+...+|++| +-..+.... .....+++.+++.++....+...+-...-
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi 196 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI 196 (486)
T ss_pred cCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4566799999997665566777777665544455555554 433333221 11237999999999988888775532211
Q ss_pred CCChhHHHHHHHHHHHhcCChHHHH
Q 003435 88 DESTELEEIGQKIVAKCKGLPIAIK 112 (820)
Q Consensus 88 ~~~~~~~~~~~~i~~~c~glPlal~ 112 (820)
.--.+.+..+++.++|-+-.+.
T Consensus 197 ---~id~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 197 ---EYEEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHH
Confidence 1123556778888988665433
No 173
>CHL00181 cbbX CbbX; Provisional
Probab=52.84 E-value=1e+02 Score=31.35 Aligned_cols=71 Identities=13% Similarity=0.142 Sum_probs=44.1
Q ss_pred eEEEEEeCCCCC---------ChhhHHHHHhhccCCCCCcEEEEecCchHHHhhh--------CCCCeEeCCCCChHhHH
Q 003435 13 GFLIVLDDVWDE---------DGENMEKALSWLNVGGSGSCVLVTTRSGRVASMM--------GTVPTQHLTCLSSEDSW 75 (820)
Q Consensus 13 ~~llvlDdv~~~---------~~~~~~~~~~~~~~~~~gs~iiiTtr~~~~~~~~--------~~~~~~~l~~l~~~~a~ 75 (820)
.-+|+||++..- ..+..+.+.....+...+.+||+++..+.+.... .....+++++++.+|..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 458999999531 1223344444454444567777877654432111 11237999999999999
Q ss_pred HHHHHHhc
Q 003435 76 VLFKHFAF 83 (820)
Q Consensus 76 ~Lf~~~~~ 83 (820)
+++...+-
T Consensus 203 ~I~~~~l~ 210 (287)
T CHL00181 203 QIAKIMLE 210 (287)
T ss_pred HHHHHHHH
Confidence 99888763
No 174
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=52.83 E-value=71 Score=33.18 Aligned_cols=69 Identities=12% Similarity=0.082 Sum_probs=43.1
Q ss_pred eEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchH-HHhhhC-CCCeEeCCCCChHhHHHHHHHH
Q 003435 13 GFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGR-VASMMG-TVPTQHLTCLSSEDSWVLFKHF 81 (820)
Q Consensus 13 ~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~-~~~~~~-~~~~~~l~~l~~~~a~~Lf~~~ 81 (820)
+=++|+|++..-+.+.-..+...+.....+..+|+||.+.+ +..... .-..+.+.+++.+++.+.+...
T Consensus 114 ~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 114 LRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred ceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 33445688877666666666665544334566777776644 332211 1137899999999988888653
No 175
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=52.69 E-value=17 Score=35.34 Aligned_cols=47 Identities=17% Similarity=0.131 Sum_probs=30.5
Q ss_pred ceEEEEEeCCCCCC-hhhHHHHHhhccCCCCCcEEEEecCchHHHhhh
Q 003435 12 RGFLIVLDDVWDED-GENMEKALSWLNVGGSGSCVLVTTRSGRVASMM 58 (820)
Q Consensus 12 ~~~llvlDdv~~~~-~~~~~~~~~~~~~~~~gs~iiiTtr~~~~~~~~ 58 (820)
..-++|||||...- ......+...+......+.+||||-++.++...
T Consensus 158 ~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a 205 (220)
T PF02463_consen 158 PSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDA 205 (220)
T ss_dssp --SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 44589999997643 344555665665556678999999998888764
No 176
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=52.43 E-value=18 Score=34.53 Aligned_cols=44 Identities=25% Similarity=0.548 Sum_probs=25.7
Q ss_pred HcCCc---eEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchHH
Q 003435 8 YWRGR---GFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGRV 54 (820)
Q Consensus 8 ~l~~~---~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~~ 54 (820)
+++++ ..+||+|++.+...+++..+.... +.|||||++--..++
T Consensus 112 ~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD~~Q~ 158 (205)
T PF02562_consen 112 FIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGDPSQI 158 (205)
T ss_dssp GGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE-----
T ss_pred hhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecCceee
Confidence 44555 369999999887777777776665 889999999755443
No 177
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=51.97 E-value=82 Score=34.05 Aligned_cols=93 Identities=15% Similarity=0.098 Sum_probs=53.4
Q ss_pred EEEEEeCCCCCCh-hhHH-HHHhhccC-CCCCcEEEEecCch---------HHHhhhCCCCeEeCCCCChHhHHHHHHHH
Q 003435 14 FLIVLDDVWDEDG-ENME-KALSWLNV-GGSGSCVLVTTRSG---------RVASMMGTVPTQHLTCLSSEDSWVLFKHF 81 (820)
Q Consensus 14 ~llvlDdv~~~~~-~~~~-~~~~~~~~-~~~gs~iiiTtr~~---------~~~~~~~~~~~~~l~~l~~~~a~~Lf~~~ 81 (820)
-+|||||+..... +.++ .+...+.. ...|..|||||... .+...+.....+++++.+.++-..++...
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 3788999964221 1122 22222211 12455688887641 12223333347999999999999999888
Q ss_pred hcCCCCCCChhHHHHHHHHHHHhcCChH
Q 003435 82 AFGSVEDESTELEEIGQKIVAKCKGLPI 109 (820)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~~c~glPl 109 (820)
+-...... -+++...|++.+.|-.=
T Consensus 281 ~~~~~~~l---~~e~l~~ia~~~~~~~r 305 (405)
T TIGR00362 281 AEEEGLEL---PDEVLEFIAKNIRSNVR 305 (405)
T ss_pred HHHcCCCC---CHHHHHHHHHhcCCCHH
Confidence 74432221 24567777777777544
No 178
>PRK04132 replication factor C small subunit; Provisional
Probab=49.75 E-value=1.9e+02 Score=34.36 Aligned_cols=96 Identities=14% Similarity=0.003 Sum_probs=64.8
Q ss_pred ceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCch-HHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCCC
Q 003435 12 RGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSG-RVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVEDE 89 (820)
Q Consensus 12 ~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~-~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~~ 89 (820)
+.-++|+|+++.-..++...+....-.....+++|++|.+. .+.... .....+++++++.++-.+.+.+.+-.. ..
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~E-gi- 707 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENE-GL- 707 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhc-CC-
Confidence 45799999998877777888887776555677777766553 332221 112389999999998888877655321 11
Q ss_pred ChhHHHHHHHHHHHhcCChHH
Q 003435 90 STELEEIGQKIVAKCKGLPIA 110 (820)
Q Consensus 90 ~~~~~~~~~~i~~~c~glPla 110 (820)
+--.+....+++.|+|-+-.
T Consensus 708 -~i~~e~L~~Ia~~s~GDlR~ 727 (846)
T PRK04132 708 -ELTEEGLQAILYIAEGDMRR 727 (846)
T ss_pred -CCCHHHHHHHHHHcCCCHHH
Confidence 11245678999999997733
No 179
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.18 E-value=1.6e+02 Score=33.38 Aligned_cols=104 Identities=9% Similarity=0.080 Sum_probs=66.8
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecC-chHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCC
Q 003435 10 RGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTR-SGRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVE 87 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr-~~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~ 87 (820)
.+++-++|+|++..-..+..+.+...+-.......+|++|. .+.+.... .....|+++.++.++..+.+.+.+-....
T Consensus 116 ~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi 195 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV 195 (584)
T ss_pred cCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 35566889999977667778888777766555666665554 44443321 11247999999999988888775532211
Q ss_pred CCChhHHHHHHHHHHHhcCCh-HHHHHHHH
Q 003435 88 DESTELEEIGQKIVAKCKGLP-IAIKTIGS 116 (820)
Q Consensus 88 ~~~~~~~~~~~~i~~~c~glP-lal~~~~~ 116 (820)
.--.+.+..|++.++|-+ -|+..+-.
T Consensus 196 ---~i~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 196 ---VVDDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 112345677888999976 45555444
No 180
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=47.58 E-value=9.3 Score=41.39 Aligned_cols=67 Identities=19% Similarity=0.199 Sum_probs=39.6
Q ss_pred CCCCccEEEEccCCCcc--chhhhcCCCCCcceEeeccCcccccCccccC--CCCcccEEEecCCCCCCcc
Q 003435 658 NLNSLVKLTVNECDNLE--SLFVFMQSFSSLRHLSILHCDKLESLPMSLE--KFCSLQKLDIVECPRLVHI 724 (820)
Q Consensus 658 ~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~L~~n~~~~~~ 724 (820)
+.+.+..+.|++|++.. .+.......|+|+.|+|++|...-....++. +...|++|-+.+|++.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 34455555566655432 2233445678999999999932211111222 2346889999999887654
No 181
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=47.47 E-value=1.2e+02 Score=31.65 Aligned_cols=70 Identities=9% Similarity=0.147 Sum_probs=48.7
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchH-HHhhh-CCCCeEeCCCCChHhHHHHHHH
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGR-VASMM-GTVPTQHLTCLSSEDSWVLFKH 80 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~-~~~~~-~~~~~~~l~~l~~~~a~~Lf~~ 80 (820)
+++=++|+|++.....+.-..+...+-....++.+|++|.+.+ +.... ..-..++++++++++..+.+..
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 4555789999977666677778877766567788887776633 22211 1123799999999999888865
No 182
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=46.78 E-value=17 Score=31.63 Aligned_cols=47 Identities=26% Similarity=0.136 Sum_probs=31.4
Q ss_pred HHHHHHcCCce-EEEEEeCCCCC-ChhhHHHHHhhccCCCCCcEEEEecCc
Q 003435 3 WKLEVYWRGRG-FLIVLDDVWDE-DGENMEKALSWLNVGGSGSCVLVTTRS 51 (820)
Q Consensus 3 ~~l~~~l~~~~-~llvlDdv~~~-~~~~~~~~~~~~~~~~~gs~iiiTtr~ 51 (820)
+.+.+.++..+ .+||+|++..- ..+.++.+..... ..+.+||++.+.
T Consensus 77 ~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 77 SLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 45666665444 59999999664 4455566655443 678888887765
No 183
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=46.75 E-value=1.4e+02 Score=32.54 Aligned_cols=96 Identities=13% Similarity=0.065 Sum_probs=53.3
Q ss_pred cCCceEEEEEeCCCCCC-hhhH-HHHHhhccC-CCCCcEEEEecC-chH--------HHhhhCCCCeEeCCCCChHhHHH
Q 003435 9 WRGRGFLIVLDDVWDED-GENM-EKALSWLNV-GGSGSCVLVTTR-SGR--------VASMMGTVPTQHLTCLSSEDSWV 76 (820)
Q Consensus 9 l~~~~~llvlDdv~~~~-~~~~-~~~~~~~~~-~~~gs~iiiTtr-~~~--------~~~~~~~~~~~~l~~l~~~~a~~ 76 (820)
.+.+.-+||+||+..-. ...+ +.+...+.. ...|..||+||+ ... +...+...-++++++.+.+.-..
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 33345589999996421 1112 122222211 123557888884 322 22223344588999999999999
Q ss_pred HHHHHhcCCCCCCChhHHHHHHHHHHHhcCC
Q 003435 77 LFKHFAFGSVEDESTELEEIGQKIVAKCKGL 107 (820)
Q Consensus 77 Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 107 (820)
++.+++-...... -++++..|++.+.|-
T Consensus 271 IL~~~~~~~~~~l---~~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 271 IARKMLEIEHGEL---PEEVLNFVAENVDDN 298 (440)
T ss_pred HHHHHHHhcCCCC---CHHHHHHHHhccccC
Confidence 9988874321111 235567777777663
No 184
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=45.74 E-value=37 Score=29.84 Aligned_cols=45 Identities=13% Similarity=0.063 Sum_probs=26.9
Q ss_pred cCCceEEEEEeCCCCCCh---hhHHHHHhhccCC---CCCcEEEEecCchH
Q 003435 9 WRGRGFLIVLDDVWDEDG---ENMEKALSWLNVG---GSGSCVLVTTRSGR 53 (820)
Q Consensus 9 l~~~~~llvlDdv~~~~~---~~~~~~~~~~~~~---~~gs~iiiTtr~~~ 53 (820)
...+..+||+||++.... ..+.......... ..+.+||+||....
T Consensus 81 ~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 81 EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 345678999999975322 2233333333221 36788999887643
No 185
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=45.42 E-value=1.2e+02 Score=31.05 Aligned_cols=95 Identities=9% Similarity=0.073 Sum_probs=61.2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCc-hHHHhh-hCCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRS-GRVASM-MGTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~-~~~~~~-~~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
+++=++|+|++.....+...++...+-...+++.+|++|.+ +.+... ......+++.++++++..+.+... +.
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~---~~-- 163 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK---NK-- 163 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc---CC--
Confidence 47778889999776666777787777666677777765544 444432 122248999999999988777653 11
Q ss_pred CChhHHHHHHHHHHHhcCChHHHHHH
Q 003435 89 ESTELEEIGQKIVAKCKGLPIAIKTI 114 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glPlal~~~ 114 (820)
. ++.++.++...+|.=-|+..+
T Consensus 164 -~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 164 -E---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred -C---hhHHHHHHHHcCCHHHHHHHH
Confidence 1 133666666777733455543
No 186
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=45.31 E-value=88 Score=33.57 Aligned_cols=93 Identities=11% Similarity=0.068 Sum_probs=51.4
Q ss_pred CceEEEEEeCCCCC-----------ChhhHHHHHhhc---cC--CCCCcEEEEecCchHHHhhh-----CCCCeEeCCCC
Q 003435 11 GRGFLIVLDDVWDE-----------DGENMEKALSWL---NV--GGSGSCVLVTTRSGRVASMM-----GTVPTQHLTCL 69 (820)
Q Consensus 11 ~~~~llvlDdv~~~-----------~~~~~~~~~~~~---~~--~~~gs~iiiTtr~~~~~~~~-----~~~~~~~l~~l 69 (820)
....+|+||+++.- +.+....+...+ .. ...+.+||.||......... .-+..++++..
T Consensus 223 ~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P 302 (389)
T PRK03992 223 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLP 302 (389)
T ss_pred cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCC
Confidence 45689999999641 111112222221 11 12356788888764332211 12347999999
Q ss_pred ChHhHHHHHHHHhcCCCCCCChhHHHHHHHHHHHhcCC
Q 003435 70 SSEDSWVLFKHFAFGSVEDESTELEEIGQKIVAKCKGL 107 (820)
Q Consensus 70 ~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 107 (820)
+.++..++|.....+..-....++ ..+++.+.|.
T Consensus 303 ~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~ 336 (389)
T PRK03992 303 DEEGRLEILKIHTRKMNLADDVDL----EELAELTEGA 336 (389)
T ss_pred CHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCC
Confidence 999999999887644322222334 4455555554
No 187
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.68 E-value=1.1e+02 Score=34.73 Aligned_cols=101 Identities=11% Similarity=0.034 Sum_probs=62.7
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEec-CchHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTT-RSGRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTt-r~~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
+++-++|+|+|..-..+..+.+...+-.....+.+|++| .-+.+.... ..-..++++.++.++....+...+-....
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi- 196 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI- 196 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC-
Confidence 455578999997766667777777775544566666555 444444321 11137889999998888777665422211
Q ss_pred CChhHHHHHHHHHHHhcCCh-HHHHHH
Q 003435 89 ESTELEEIGQKIVAKCKGLP-IAIKTI 114 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glP-lal~~~ 114 (820)
.--.+.+..+++.++|-. .|+..+
T Consensus 197 --~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 197 --SISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred --CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 112355777888888854 555554
No 188
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=43.66 E-value=66 Score=33.33 Aligned_cols=67 Identities=13% Similarity=0.209 Sum_probs=40.9
Q ss_pred CceEEEEEeCCCCC-ChhhHHHHHhhccCCCCCcEEEEecCchH-----HHhhhCCCCeEeCCCCChHhHHHHHHH
Q 003435 11 GRGFLIVLDDVWDE-DGENMEKALSWLNVGGSGSCVLVTTRSGR-----VASMMGTVPTQHLTCLSSEDSWVLFKH 80 (820)
Q Consensus 11 ~~~~llvlDdv~~~-~~~~~~~~~~~~~~~~~gs~iiiTtr~~~-----~~~~~~~~~~~~l~~l~~~~a~~Lf~~ 80 (820)
+.+-+||+|++... ..+..+.+...+.....++++|+||.... +...+ ..++++..+.++..+++..
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~---~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC---RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc---eEEEeCCCCHHHHHHHHHH
Confidence 34567899999654 22333444444544456788999986533 22222 3677777778887766544
No 189
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=43.56 E-value=1.1e+02 Score=33.50 Aligned_cols=94 Identities=18% Similarity=0.094 Sum_probs=54.7
Q ss_pred eEEEEEeCCCCCCh-hhH-HHHHhhccC-CCCCcEEEEecCch---------HHHhhhCCCCeEeCCCCChHhHHHHHHH
Q 003435 13 GFLIVLDDVWDEDG-ENM-EKALSWLNV-GGSGSCVLVTTRSG---------RVASMMGTVPTQHLTCLSSEDSWVLFKH 80 (820)
Q Consensus 13 ~~llvlDdv~~~~~-~~~-~~~~~~~~~-~~~gs~iiiTtr~~---------~~~~~~~~~~~~~l~~l~~~~a~~Lf~~ 80 (820)
.-+|||||+..-.. +.+ +.+...+.. ...|..||+||... .+...+.....+++++.+.++-.+++.+
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 34889999954211 112 222222211 12355688888652 1233444445799999999999999998
Q ss_pred HhcCCCCCCChhHHHHHHHHHHHhcCChH
Q 003435 81 FAFGSVEDESTELEEIGQKIVAKCKGLPI 109 (820)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~~c~glPl 109 (820)
.+-...... -+++...|++.+.|-.=
T Consensus 292 ~~~~~~~~l---~~e~l~~ia~~~~~~~R 317 (450)
T PRK00149 292 KAEEEGIDL---PDEVLEFIAKNITSNVR 317 (450)
T ss_pred HHHHcCCCC---CHHHHHHHHcCcCCCHH
Confidence 874321111 23457777777777544
No 190
>PRK10536 hypothetical protein; Provisional
Probab=43.33 E-value=38 Score=33.48 Aligned_cols=44 Identities=30% Similarity=0.529 Sum_probs=32.7
Q ss_pred HcCCceE---EEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchHH
Q 003435 8 YWRGRGF---LIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGRV 54 (820)
Q Consensus 8 ~l~~~~~---llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~~ 54 (820)
+++++.+ +||+|++...+......+.... +.|||||+|--..++
T Consensus 169 ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~---g~~sk~v~~GD~~Qi 215 (262)
T PRK10536 169 YMRGRTFENAVVILDEAQNVTAAQMKMFLTRL---GENVTVIVNGDITQC 215 (262)
T ss_pred HhcCCcccCCEEEEechhcCCHHHHHHHHhhc---CCCCEEEEeCChhhc
Confidence 5566654 9999999887776666666666 789999998755443
No 191
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=42.61 E-value=1.1e+02 Score=33.33 Aligned_cols=91 Identities=13% Similarity=0.063 Sum_probs=49.7
Q ss_pred eEEEEEeCCCCCChhh-H-HHHHhhccC-CCCCcEEEEecCc---------hHHHhhhCCCCeEeCCCCChHhHHHHHHH
Q 003435 13 GFLIVLDDVWDEDGEN-M-EKALSWLNV-GGSGSCVLVTTRS---------GRVASMMGTVPTQHLTCLSSEDSWVLFKH 80 (820)
Q Consensus 13 ~~llvlDdv~~~~~~~-~-~~~~~~~~~-~~~gs~iiiTtr~---------~~~~~~~~~~~~~~l~~l~~~~a~~Lf~~ 80 (820)
.-+||+||+....... + +.+...+.. ...|..||+||.. +.+...+...-.+++++++.++-.+++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 3478889985422111 1 222222210 1235678888854 12333344445899999999999999988
Q ss_pred HhcCCCCCCChhHHHHHHHHHHHhcC
Q 003435 81 FAFGSVEDESTELEEIGQKIVAKCKG 106 (820)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~~c~g 106 (820)
++-...-... .++..-+++.+.|
T Consensus 283 k~~~~~~~l~---~evl~~la~~~~~ 305 (445)
T PRK12422 283 KAEALSIRIE---ETALDFLIEALSS 305 (445)
T ss_pred HHHHcCCCCC---HHHHHHHHHhcCC
Confidence 7743211111 2344445555553
No 192
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=41.04 E-value=1.3e+02 Score=32.43 Aligned_cols=94 Identities=14% Similarity=0.130 Sum_probs=51.7
Q ss_pred CCceEEEEEeCCCCC-----------Chh---hHHHHHhhccC--CCCCcEEEEecCchHHHhh-----hCCCCeEeCCC
Q 003435 10 RGRGFLIVLDDVWDE-----------DGE---NMEKALSWLNV--GGSGSCVLVTTRSGRVASM-----MGTVPTQHLTC 68 (820)
Q Consensus 10 ~~~~~llvlDdv~~~-----------~~~---~~~~~~~~~~~--~~~gs~iiiTtr~~~~~~~-----~~~~~~~~l~~ 68 (820)
.....+|++|+++.- +.+ .+..+...+.. ...+..||+||........ ..-+..++++.
T Consensus 236 ~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~ 315 (398)
T PTZ00454 236 ENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPL 315 (398)
T ss_pred hcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCC
Confidence 456789999998531 000 12222222221 2246678888876443322 11234789999
Q ss_pred CChHhHHHHHHHHhcCCCCCCChhHHHHHHHHHHHhcCC
Q 003435 69 LSSEDSWVLFKHFAFGSVEDESTELEEIGQKIVAKCKGL 107 (820)
Q Consensus 69 l~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 107 (820)
.+.++..++|.....+.......++. ++++...|.
T Consensus 316 P~~~~R~~Il~~~~~~~~l~~dvd~~----~la~~t~g~ 350 (398)
T PTZ00454 316 PDRRQKRLIFQTITSKMNLSEEVDLE----DFVSRPEKI 350 (398)
T ss_pred cCHHHHHHHHHHHHhcCCCCcccCHH----HHHHHcCCC
Confidence 99999888888765332222223343 444555554
No 193
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=36.77 E-value=1.7e+02 Score=30.91 Aligned_cols=146 Identities=16% Similarity=0.107 Sum_probs=74.6
Q ss_pred cCCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEE--ecCchHHHh---hhCCCCeEeCCCCChHhHHHHHHHHhc
Q 003435 9 WRGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLV--TTRSGRVAS---MMGTVPTQHLTCLSSEDSWVLFKHFAF 83 (820)
Q Consensus 9 l~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iii--Ttr~~~~~~---~~~~~~~~~l~~l~~~~a~~Lf~~~~~ 83 (820)
..++|.+|.+|.|-.=...+-+.+ +|--..|.-|+| ||-+....- ......+|++++|+.+|-.++..+-+-
T Consensus 101 ~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~ 177 (436)
T COG2256 101 LLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALL 177 (436)
T ss_pred hcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHh
Confidence 358899999999954222222333 232357877775 554432111 012224899999999999999988321
Q ss_pred CCCC-C--CChh-HHHHHHHHHHHhcCChH----HHHHHHHhhccCC---HHHHHHhhhcchhchhccCc---chhhHHH
Q 003435 84 GSVE-D--ESTE-LEEIGQKIVAKCKGLPI----AIKTIGSILRSKD---KEEWLSVADCDLWTLLEFKS---HVLPVLK 149 (820)
Q Consensus 84 ~~~~-~--~~~~-~~~~~~~i~~~c~glPl----al~~~~~~l~~k~---~~~w~~~~~~~~~~~~~~~~---~i~~~l~ 149 (820)
..+. - .... -+++...+++.+.|=-= ++.++...-+... .+..+..+++.....++..+ ++.+.+.
T Consensus 178 ~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~h 257 (436)
T COG2256 178 DEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISALH 257 (436)
T ss_pred hhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHH
Confidence 1111 1 1111 23466677888877422 2233333333222 34444555443333333222 3445555
Q ss_pred hhhcCCCh
Q 003435 150 RSYDNLPW 157 (820)
Q Consensus 150 ~sy~~L~~ 157 (820)
-|-.+-+.
T Consensus 258 KSvRGSD~ 265 (436)
T COG2256 258 KSVRGSDP 265 (436)
T ss_pred HhhccCCc
Confidence 55554443
No 194
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=34.32 E-value=4.2e+02 Score=30.06 Aligned_cols=98 Identities=13% Similarity=0.054 Sum_probs=60.5
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEE-ecCchHHHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCC
Q 003435 10 RGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLV-TTRSGRVASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVE 87 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iii-Ttr~~~~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~ 87 (820)
.+++-++|+|++..-..+.+..+...+........+|+ ||.-+.+.... .....+++.+++.++..+.+...+-...-
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi 196 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI 196 (559)
T ss_pred cCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 45667889999976666778888776654334445554 44444333221 11136889999999988888776532211
Q ss_pred CCChhHHHHHHHHHHHhcCChHH
Q 003435 88 DESTELEEIGQKIVAKCKGLPIA 110 (820)
Q Consensus 88 ~~~~~~~~~~~~i~~~c~glPla 110 (820)
. --.+.+..+++.++|-+-.
T Consensus 197 ~---i~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 197 E---YEDEALRLIARAAEGGMRD 216 (559)
T ss_pred C---CCHHHHHHHHHHcCCCHHH
Confidence 1 1235577888888886643
No 195
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=33.37 E-value=71 Score=29.18 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=33.7
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchH
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGR 53 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~ 53 (820)
+++=++|+|+++....+.+.++...+-....++++|++|++..
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 4566889999988778889999888877778999998888744
No 196
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=31.95 E-value=55 Score=33.91 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=28.1
Q ss_pred eEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchHH
Q 003435 13 GFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGRV 54 (820)
Q Consensus 13 ~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~~ 54 (820)
+.|||+|....-.+.+...+.... |.|||||.|---.++
T Consensus 352 ~~FiIIDEaQNLTpheikTiltR~---G~GsKIVl~gd~aQi 390 (436)
T COG1875 352 DSFIIIDEAQNLTPHELKTILTRA---GEGSKIVLTGDPAQI 390 (436)
T ss_pred cceEEEehhhccCHHHHHHHHHhc---cCCCEEEEcCCHHHc
Confidence 478999999776555555555554 899999998754443
No 197
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=30.94 E-value=2.4e+02 Score=25.69 Aligned_cols=98 Identities=5% Similarity=-0.012 Sum_probs=50.1
Q ss_pred ceEEEEEeCC----CCCChhhHHHHHhhccCCCCCcEEEEecC-ch----HHHhhhCCC-CeEeCCCCChHhHHHHHHHH
Q 003435 12 RGFLIVLDDV----WDEDGENMEKALSWLNVGGSGSCVLVTTR-SG----RVASMMGTV-PTQHLTCLSSEDSWVLFKHF 81 (820)
Q Consensus 12 ~~~llvlDdv----~~~~~~~~~~~~~~~~~~~~gs~iiiTtr-~~----~~~~~~~~~-~~~~l~~l~~~~a~~Lf~~~ 81 (820)
.+-+||+.+. .......++.+...+....+++.||+.+. .. ......... .+++..++...+........
T Consensus 57 ~~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~ 136 (172)
T PF06144_consen 57 DKKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKER 136 (172)
T ss_dssp SEEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHH
T ss_pred CCeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHH
Confidence 3445555554 22334678888888876667888888887 21 122222222 25677777777777777666
Q ss_pred hcCCCCCCChhHHHHHHHHHHHhcCChHHHH
Q 003435 82 AFGSVEDESTELEEIGQKIVAKCKGLPIAIK 112 (820)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~~c~glPlal~ 112 (820)
+-...- .--.+.+..++++.++-+.++.
T Consensus 137 ~~~~g~---~i~~~a~~~L~~~~~~d~~~l~ 164 (172)
T PF06144_consen 137 AKKNGL---KIDPDAAQYLIERVGNDLSLLQ 164 (172)
T ss_dssp HHHTT----EE-HHHHHHHHHHHTT-HHHHH
T ss_pred HHHcCC---CCCHHHHHHHHHHhChHHHHHH
Confidence 532211 2234557777777777765553
No 198
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=29.98 E-value=3.1e+02 Score=27.41 Aligned_cols=69 Identities=9% Similarity=0.130 Sum_probs=40.6
Q ss_pred eEEEEEeCCCCCC--------hhhHHHHHhhccCCCCCcEEEEecCchHH----------HhhhCCCCeEeCCCCChHhH
Q 003435 13 GFLIVLDDVWDED--------GENMEKALSWLNVGGSGSCVLVTTRSGRV----------ASMMGTVPTQHLTCLSSEDS 74 (820)
Q Consensus 13 ~~llvlDdv~~~~--------~~~~~~~~~~~~~~~~gs~iiiTtr~~~~----------~~~~~~~~~~~l~~l~~~~a 74 (820)
..+|++|++..-. .+..+.+............+|+++..+.. .+.+ ...++++.++.+|-
T Consensus 106 ~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~~~el 183 (261)
T TIGR02881 106 GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRF--PISIDFPDYTVEEL 183 (261)
T ss_pred CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhcc--ceEEEECCCCHHHH
Confidence 4588999995411 12344455554443334455566543322 2222 13688999999999
Q ss_pred HHHHHHHhc
Q 003435 75 WVLFKHFAF 83 (820)
Q Consensus 75 ~~Lf~~~~~ 83 (820)
.+++.+.+.
T Consensus 184 ~~Il~~~~~ 192 (261)
T TIGR02881 184 MEIAERMVK 192 (261)
T ss_pred HHHHHHHHH
Confidence 999987664
No 199
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=28.96 E-value=4.1e+02 Score=26.75 Aligned_cols=138 Identities=12% Similarity=0.119 Sum_probs=80.3
Q ss_pred EEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchH--HHhhhCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCChh
Q 003435 15 LIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGR--VASMMGTVPTQHLTCLSSEDSWVLFKHFAFGSVEDESTE 92 (820)
Q Consensus 15 llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~--~~~~~~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~~~~~ 92 (820)
++|+-.++.-..++-.+++...-++...+|+|+..-+.. +..--..--.+.+...+++|-...++..+-+..-. -|
T Consensus 130 vvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~-lp- 207 (351)
T KOG2035|consen 130 VVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQ-LP- 207 (351)
T ss_pred EEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhccc-Cc-
Confidence 456666654444555666766666778889887544311 11110111268899999999999988766433222 22
Q ss_pred HHHHHHHHHHHhcCC-hHHHHHHHHhh------ccC----CHHHHHHhhhcchhchhcc--CcchhhHHHhhhcCC
Q 003435 93 LEEIGQKIVAKCKGL-PIAIKTIGSIL------RSK----DKEEWLSVADCDLWTLLEF--KSHVLPVLKRSYDNL 155 (820)
Q Consensus 93 ~~~~~~~i~~~c~gl-Plal~~~~~~l------~~k----~~~~w~~~~~~~~~~~~~~--~~~i~~~l~~sy~~L 155 (820)
++++.+|+++++|- --|+.++-+.- .++ +...|+-+.++........ ++.+.++-..-|+-|
T Consensus 208 -~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 208 -KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred -HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 67899999999884 44544433221 111 1568987766544443332 234555555556554
No 200
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=27.79 E-value=4e+02 Score=27.15 Aligned_cols=69 Identities=12% Similarity=0.128 Sum_probs=44.5
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCch-HHHhhhC-CCCeEeCCCCChHhHHHHHH
Q 003435 10 RGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSG-RVASMMG-TVPTQHLTCLSSEDSWVLFK 79 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~-~~~~~~~-~~~~~~l~~l~~~~a~~Lf~ 79 (820)
.+++=++|+|+++....+.+..+...+-.-.+++.+|++|.+. .+....- .-..+.+.. +.++..+.+.
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 3566788999998887788888888886555667777777553 3433211 112566665 5555555554
No 201
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=26.89 E-value=92 Score=33.84 Aligned_cols=44 Identities=7% Similarity=-0.044 Sum_probs=31.4
Q ss_pred CCcEEEEecCchHHHhhh-----CCCCeEeCCCCChHhHHHHHHHHhcC
Q 003435 41 SGSCVLVTTRSGRVASMM-----GTVPTQHLTCLSSEDSWVLFKHFAFG 84 (820)
Q Consensus 41 ~gs~iiiTtr~~~~~~~~-----~~~~~~~l~~l~~~~a~~Lf~~~~~~ 84 (820)
.+-+||+||......... ..+..++++..+.++..++|.....+
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 466788888765544431 12247999999999999999877643
No 202
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=26.43 E-value=98 Score=28.15 Aligned_cols=50 Identities=16% Similarity=0.133 Sum_probs=29.5
Q ss_pred HHHHHcC-CceEEEEEeCCCCC---ChhhHHHHHhhccCCCCCcEEEEecCchH
Q 003435 4 KLEVYWR-GRGFLIVLDDVWDE---DGENMEKALSWLNVGGSGSCVLVTTRSGR 53 (820)
Q Consensus 4 ~l~~~l~-~~~~llvlDdv~~~---~~~~~~~~~~~~~~~~~gs~iiiTtr~~~ 53 (820)
..++.++ ++-=|||||++-.. ..-..+.+...+...-.+.-||+|.|+..
T Consensus 86 ~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 86 FAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 3445554 34569999998431 11223444444444445678999999943
No 203
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=26.16 E-value=1.7e+02 Score=31.68 Aligned_cols=114 Identities=11% Similarity=0.011 Sum_probs=62.0
Q ss_pred HHHHHHcCCce--EEEEEeCCCCCC---hhhHHHHHhhccCCCCCcEEEEecCc------hHHHhh----hCCC-CeEeC
Q 003435 3 WKLEVYWRGRG--FLIVLDDVWDED---GENMEKALSWLNVGGSGSCVLVTTRS------GRVASM----MGTV-PTQHL 66 (820)
Q Consensus 3 ~~l~~~l~~~~--~llvlDdv~~~~---~~~~~~~~~~~~~~~~gs~iiiTtr~------~~~~~~----~~~~-~~~~l 66 (820)
+++.++.+..+ +++|+|.++.-. +...-.+ .-|++ -++||+|+.--- ...+-. .+.. ..+..
T Consensus 245 ~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~l-Fewp~-lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F 322 (529)
T KOG2227|consen 245 EKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTL-FEWPK-LPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVF 322 (529)
T ss_pred HHHHHHHhcccceEEEEechhhHHhhcccceeeee-hhccc-CCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeee
Confidence 45666665544 999999996511 1111111 12333 367887755311 111111 1222 37888
Q ss_pred CCCChHhHHHHHHHHhcCCCC--CCChhHHHHHHHHHHHhcCChHHHHHHHHhh
Q 003435 67 TCLSSEDSWVLFKHFAFGSVE--DESTELEEIGQKIVAKCKGLPIAIKTIGSIL 118 (820)
Q Consensus 67 ~~l~~~~a~~Lf~~~~~~~~~--~~~~~~~~~~~~i~~~c~glPlal~~~~~~l 118 (820)
++.+.++-.+.|+.+.-.... ..+..++-.|++++-.-|-+=-|+.+.-+++
T Consensus 323 ~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 323 PPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred cCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 899999999999998643322 1122444455555555555666666655554
No 204
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=25.64 E-value=2e+02 Score=29.79 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=33.6
Q ss_pred HHHHHHc--CCceEEEEEeCCCCCChh----hHHHHHhhccCCCCCcEEEEecCchHHHhh
Q 003435 3 WKLEVYW--RGRGFLIVLDDVWDEDGE----NMEKALSWLNVGGSGSCVLVTTRSGRVASM 57 (820)
Q Consensus 3 ~~l~~~l--~~~~~llvlDdv~~~~~~----~~~~~~~~~~~~~~gs~iiiTtr~~~~~~~ 57 (820)
.++.+.+ ..+|.+||+||+++..++ -|+.+...+. .++..+|+..-.+.+...
T Consensus 161 ~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~--~~~i~~Il~~D~~~l~~a 219 (325)
T PF07693_consen 161 SKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLD--FPNIIFILAFDPEILEKA 219 (325)
T ss_pred HHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcC--CCCeEEEEEecHHHHHHH
Confidence 3455555 458999999999885544 3444444443 367777776655555543
No 205
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=24.57 E-value=3.8e+02 Score=26.56 Aligned_cols=105 Identities=14% Similarity=0.241 Sum_probs=60.1
Q ss_pred CCce-EEEEEeCCCCCChhhHHHHHhhccCCCCCc---EEEEecCchHHHh--------hhCC-CCe-EeCCCCChHhHH
Q 003435 10 RGRG-FLIVLDDVWDEDGENMEKALSWLNVGGSGS---CVLVTTRSGRVAS--------MMGT-VPT-QHLTCLSSEDSW 75 (820)
Q Consensus 10 ~~~~-~llvlDdv~~~~~~~~~~~~~~~~~~~~gs---~iiiTtr~~~~~~--------~~~~-~~~-~~l~~l~~~~a~ 75 (820)
+++| +.++.||..+......+.++-...-...+| +|+..-. +++.. ..+- ... |++.+++.++..
T Consensus 128 ~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gq-p~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~ 206 (269)
T COG3267 128 KGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQ-PKLRPRLRLPVLRELEQRIDIRIELPPLTEAETG 206 (269)
T ss_pred hCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCC-cccchhhchHHHHhhhheEEEEEecCCcChHHHH
Confidence 6778 999999997655555666543321111222 2443322 22211 1111 114 999999999888
Q ss_pred HHHHHHhcCCCCCCChhHHHHHHHHHHHhcCChHHHHHHH
Q 003435 76 VLFKHFAFGSVEDESTELEEIGQKIVAKCKGLPIAIKTIG 115 (820)
Q Consensus 76 ~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~ 115 (820)
....++..+......---.+....+.....|.|.++.-++
T Consensus 207 ~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 207 LYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred HHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 8887765433221111123455667778889999988766
No 206
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=24.21 E-value=36 Score=36.47 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=16.9
Q ss_pred HHHHHHcCCceEEEEEeCCCC
Q 003435 3 WKLEVYWRGRGFLIVLDDVWD 23 (820)
Q Consensus 3 ~~l~~~l~~~~~llvlDdv~~ 23 (820)
++|.+..+....++|+|+.|.
T Consensus 158 ~~I~~la~~~gi~vIvDea~~ 178 (388)
T PRK08861 158 AELCQKAKAVGALVAVDNTFL 178 (388)
T ss_pred HHHHHHHHHcCCEEEEECCcc
Confidence 466777777789999999976
No 207
>PRK08116 hypothetical protein; Validated
Probab=23.92 E-value=86 Score=31.54 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=25.6
Q ss_pred HHHHcCCceEEEEEeCCCCCChhhHHH--HHhhccC-CCCCcEEEEecCc
Q 003435 5 LEVYWRGRGFLIVLDDVWDEDGENMEK--ALSWLNV-GGSGSCVLVTTRS 51 (820)
Q Consensus 5 l~~~l~~~~~llvlDdv~~~~~~~~~~--~~~~~~~-~~~gs~iiiTtr~ 51 (820)
+.+.+++-. +|||||+..+...+|.. +...+.. ...|..+||||..
T Consensus 172 ~~~~l~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 172 IIRSLVNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred HHHHhcCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 334454444 79999995443344533 3322221 2356679999965
No 208
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=23.04 E-value=28 Score=37.16 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=17.6
Q ss_pred HHHHHHHcCCceEEEEEeCCCC
Q 003435 2 WWKLEVYWRGRGFLIVLDDVWD 23 (820)
Q Consensus 2 ~~~l~~~l~~~~~llvlDdv~~ 23 (820)
+++|.+..+....++|.|+++.
T Consensus 153 i~~I~~la~~~gi~vivD~t~a 174 (380)
T PRK06176 153 LAQCASVAKDHGLLTIVDNTFA 174 (380)
T ss_pred HHHHHHHHHHcCCEEEEECCcc
Confidence 3567777777889999999975
No 209
>KOG4062 consensus 6-O-methylguanine-DNA methyltransferase MGMT/MGT1, involved in DNA repair [Replication, recombination and repair]
Probab=22.14 E-value=73 Score=28.36 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=29.0
Q ss_pred ChhHHHHHHHHHHHhcCChHHHHHHHHhhccCC---HHHHHHhhh
Q 003435 90 STELEEIGQKIVAKCKGLPIAIKTIGSILRSKD---KEEWLSVAD 131 (820)
Q Consensus 90 ~~~~~~~~~~i~~~c~glPlal~~~~~~l~~k~---~~~w~~~~~ 131 (820)
...+.++|++| |.|-|...+|++++..+ .--|+++..
T Consensus 106 v~tY~~iA~~i-----G~PsaaRaVg~A~~~n~la~lvPcHRVv~ 145 (178)
T KOG4062|consen 106 VSTYGQIARRI-----GNPSAARAVGSAMAHNNLAILVPCHRVVG 145 (178)
T ss_pred eeeHHHHHHHh-----CCcHHHHHHHHHHccCCCcEEecceeeec
Confidence 34577777776 99999999999998887 566776654
No 210
>PRK07671 cystathionine beta-lyase; Provisional
Probab=21.95 E-value=50 Score=35.29 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=18.1
Q ss_pred HHHHHHHcCCceEEEEEeCCCC
Q 003435 2 WWKLEVYWRGRGFLIVLDDVWD 23 (820)
Q Consensus 2 ~~~l~~~l~~~~~llvlDdv~~ 23 (820)
+++|.+..+....++|+|+++.
T Consensus 153 l~~I~~la~~~g~~lvvD~a~~ 174 (377)
T PRK07671 153 IKKISTIAKEKGLLTIVDNTFM 174 (377)
T ss_pred HHHHHHHHHHcCCEEEEECCCC
Confidence 4567788888889999999975
No 211
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=21.33 E-value=1.5e+02 Score=25.33 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=23.9
Q ss_pred ceEEEEEeCCCCCChhh-----------HHHHHhhccCCC---CCcEEEEecCc
Q 003435 12 RGFLIVLDDVWDEDGEN-----------MEKALSWLNVGG---SGSCVLVTTRS 51 (820)
Q Consensus 12 ~~~llvlDdv~~~~~~~-----------~~~~~~~~~~~~---~gs~iiiTtr~ 51 (820)
++.+|++||++.-.... ...+...+.... ++..||.||..
T Consensus 58 ~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 58 KPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp TSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred cceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 37999999996633332 344444443322 34567777766
No 212
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=21.25 E-value=5.2e+02 Score=28.84 Aligned_cols=94 Identities=12% Similarity=0.091 Sum_probs=50.0
Q ss_pred CCceEEEEEeCCCCCC----------hhhHHHHH----hhccC--CCCCcEEEEecCchHHHhh-----hCCCCeEeCCC
Q 003435 10 RGRGFLIVLDDVWDED----------GENMEKAL----SWLNV--GGSGSCVLVTTRSGRVASM-----MGTVPTQHLTC 68 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~----------~~~~~~~~----~~~~~--~~~gs~iiiTtr~~~~~~~-----~~~~~~~~l~~ 68 (820)
+...++|++|+++.-. .+.+.... ..... ...+-.||.||......+. ..-+..++++.
T Consensus 145 ~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~ 224 (495)
T TIGR01241 145 KNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDL 224 (495)
T ss_pred hcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCC
Confidence 3456899999994410 11122222 12211 2235556667765432221 11234799999
Q ss_pred CChHhHHHHHHHHhcCCCCCCChhHHHHHHHHHHHhcCC
Q 003435 69 LSSEDSWVLFKHFAFGSVEDESTELEEIGQKIVAKCKGL 107 (820)
Q Consensus 69 l~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 107 (820)
.+.++-.++|....-........+ ..++++.+.|.
T Consensus 225 Pd~~~R~~il~~~l~~~~~~~~~~----l~~la~~t~G~ 259 (495)
T TIGR01241 225 PDIKGREEILKVHAKNKKLAPDVD----LKAVARRTPGF 259 (495)
T ss_pred CCHHHHHHHHHHHHhcCCCCcchh----HHHHHHhCCCC
Confidence 999998999887653322111122 34667777763
No 213
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=20.78 E-value=8e+02 Score=24.85 Aligned_cols=98 Identities=8% Similarity=-0.033 Sum_probs=56.1
Q ss_pred CceEEEEEeCCCCCC-hhhHHHHHhhccCCCCCcEEEEecCch-------HHHhhhCCCCeEeCCCCChHhHHHHHHHHh
Q 003435 11 GRGFLIVLDDVWDED-GENMEKALSWLNVGGSGSCVLVTTRSG-------RVASMMGTVPTQHLTCLSSEDSWVLFKHFA 82 (820)
Q Consensus 11 ~~~~llvlDdv~~~~-~~~~~~~~~~~~~~~~gs~iiiTtr~~-------~~~~~~~~~~~~~l~~l~~~~a~~Lf~~~~ 82 (820)
+++-++|+++..... ...++.+...+....++..+|+++..- ...........++...++..+-.......+
T Consensus 45 ~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~ 124 (302)
T TIGR01128 45 SERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQARL 124 (302)
T ss_pred cCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHHH
Confidence 455668899886532 245777777776655666667666421 122221123367777887777776666654
Q ss_pred cCCCCCCChhHHHHHHHHHHHhcCChHHH
Q 003435 83 FGSVEDESTELEEIGQKIVAKCKGLPIAI 111 (820)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~~c~glPlal 111 (820)
-..... --.+.+..+++.++|-..++
T Consensus 125 ~~~g~~---i~~~a~~~l~~~~~~d~~~l 150 (302)
T TIGR01128 125 KKLGLR---IDPDAVQLLAELVEGNLLAI 150 (302)
T ss_pred HHcCCC---CCHHHHHHHHHHhCcHHHHH
Confidence 322111 12345677777777755544
Done!