Query 003435
Match_columns 820
No_of_seqs 577 out of 3885
Neff 10.5
Searched_HMMs 29240
Date Tue Mar 26 01:06:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003435.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003435hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5E-50 1.7E-54 469.6 21.1 408 275-701 94-555 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.8E-48 1.3E-52 453.7 29.1 524 261-806 100-723 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.8E-45 6.1E-50 428.1 35.3 504 281-819 25-592 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 2.7E-45 9.2E-50 426.5 32.1 533 258-820 22-618 (680)
5 3t6q_A CD180 antigen; protein- 100.0 2.3E-45 8E-50 421.3 28.8 507 258-802 30-562 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 2.1E-43 7.3E-48 405.0 32.5 501 259-800 30-558 (606)
7 3t6q_A CD180 antigen; protein- 100.0 8.2E-42 2.8E-46 391.8 32.8 470 286-820 17-556 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-42 5.3E-47 397.8 26.3 450 281-820 32-554 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-39 4.4E-44 385.5 36.1 475 259-767 22-558 (844)
10 2z63_A TOLL-like receptor 4, v 100.0 2.4E-40 8.3E-45 377.2 28.4 475 259-766 26-528 (570)
11 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-39 4.2E-44 385.7 33.5 486 279-801 22-561 (844)
12 2z63_A TOLL-like receptor 4, v 100.0 5.5E-40 1.9E-44 374.3 26.0 449 281-819 28-526 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 4.7E-39 1.6E-43 364.4 30.6 455 281-820 26-506 (549)
14 4eco_A Uncharacterized protein 100.0 1E-39 3.5E-44 373.2 20.7 358 336-800 192-600 (636)
15 4ecn_A Leucine-rich repeat pro 100.0 1.5E-38 5.1E-43 368.1 25.3 369 337-808 435-848 (876)
16 2z81_A CD282 antigen, TOLL-lik 100.0 2.4E-38 8.2E-43 358.6 25.6 461 259-804 24-514 (549)
17 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-37 3.7E-42 350.4 29.3 448 284-802 3-483 (520)
18 2z7x_B TOLL-like receptor 1, v 100.0 2.1E-37 7.1E-42 348.1 27.8 428 281-767 21-479 (520)
19 4eco_A Uncharacterized protein 100.0 9.4E-38 3.2E-42 356.9 22.7 350 313-746 192-601 (636)
20 4ecn_A Leucine-rich repeat pro 100.0 2.4E-37 8.3E-42 358.0 25.2 352 314-767 435-838 (876)
21 4g8a_A TOLL-like receptor 4; l 100.0 1E-36 3.4E-41 352.6 27.4 504 259-801 50-581 (635)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.4E-35 1.8E-39 331.0 31.3 455 282-802 32-512 (562)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-34 4.2E-39 328.0 29.5 440 264-767 34-508 (562)
24 3v47_A TOLL-like receptor 5B a 100.0 1.7E-34 5.8E-39 318.8 25.0 132 636-767 275-406 (455)
25 4g8a_A TOLL-like receptor 4; l 100.0 3.3E-34 1.1E-38 331.5 25.6 482 260-767 75-578 (635)
26 3v47_A TOLL-like receptor 5B a 100.0 3.3E-34 1.1E-38 316.5 20.8 362 281-749 30-412 (455)
27 1o6v_A Internalin A; bacterial 100.0 3.6E-33 1.2E-37 308.0 26.6 344 279-746 44-389 (466)
28 3bz5_A Internalin-J, INLJ; leu 100.0 3.5E-33 1.2E-37 304.9 24.3 357 276-807 37-394 (457)
29 1o6v_A Internalin A; bacterial 100.0 1.6E-32 5.6E-37 302.8 29.3 342 301-767 43-386 (466)
30 1jl5_A Outer protein YOPM; leu 100.0 8.8E-33 3E-37 301.4 24.9 367 280-766 10-406 (454)
31 1jl5_A Outer protein YOPM; leu 100.0 2.1E-32 7.3E-37 298.3 22.3 391 263-766 13-426 (454)
32 2id5_A Lingo-1, leucine rich r 100.0 2.7E-31 9.2E-36 294.7 26.8 317 284-722 14-334 (477)
33 2id5_A Lingo-1, leucine rich r 100.0 4.3E-31 1.5E-35 293.1 26.5 319 306-746 13-334 (477)
34 3bz5_A Internalin-J, INLJ; leu 100.0 3.3E-31 1.1E-35 289.2 22.2 218 261-566 42-261 (457)
35 4fmz_A Internalin; leucine ric 100.0 7.4E-31 2.5E-35 278.3 24.1 104 277-385 40-143 (347)
36 3o6n_A APL1; leucine-rich repe 100.0 3E-30 1E-34 278.1 23.0 308 279-746 43-353 (390)
37 2a5y_B CED-4; apoptosis; HET: 100.0 3.2E-31 1.1E-35 296.1 14.0 226 2-248 232-472 (549)
38 3oja_B Anopheles plasmodium-re 100.0 7.4E-30 2.5E-34 290.2 23.0 308 279-746 49-359 (597)
39 4fmz_A Internalin; leucine ric 100.0 1.6E-29 5.6E-34 268.0 24.0 122 261-386 44-167 (347)
40 3o6n_A APL1; leucine-rich repe 100.0 2.2E-29 7.6E-34 271.2 24.7 306 303-768 44-351 (390)
41 3oja_B Anopheles plasmodium-re 100.0 6.1E-29 2.1E-33 282.6 24.5 306 303-768 50-357 (597)
42 2ft3_A Biglycan; proteoglycan, 100.0 7.3E-28 2.5E-32 253.1 23.1 286 304-767 33-331 (332)
43 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-27 3.9E-32 251.6 24.4 287 281-743 33-331 (332)
44 1xku_A Decorin; proteoglycan, 100.0 1.8E-27 6.3E-32 249.9 25.8 289 301-766 28-329 (330)
45 1xku_A Decorin; proteoglycan, 99.9 1.7E-26 5.7E-31 242.6 24.6 288 281-743 31-330 (330)
46 1ogq_A PGIP-2, polygalacturona 99.9 5.5E-27 1.9E-31 243.4 12.0 89 304-392 50-143 (313)
47 1z7x_W Ribonuclease inhibitor; 99.9 2.3E-29 8E-34 278.2 -9.6 115 632-746 280-412 (461)
48 4fcg_A Uncharacterized protein 99.9 7.6E-26 2.6E-30 236.1 17.0 91 303-394 80-170 (328)
49 1ogq_A PGIP-2, polygalacturona 99.9 7.6E-26 2.6E-30 234.8 13.0 251 483-802 50-307 (313)
50 3ogk_B Coronatine-insensitive 99.9 1.1E-26 3.7E-31 265.6 1.2 244 505-764 268-546 (592)
51 1z7x_W Ribonuclease inhibitor; 99.9 1E-27 3.4E-32 265.2 -7.7 375 303-795 2-436 (461)
52 2z80_A TOLL-like receptor 2, v 99.9 4E-24 1.4E-28 226.7 20.0 79 305-385 32-111 (353)
53 4fcg_A Uncharacterized protein 99.9 3.1E-24 1E-28 223.9 18.4 229 482-765 80-310 (328)
54 3g06_A SSPH2 (leucine-rich rep 99.9 6.6E-24 2.2E-28 238.0 22.1 265 282-729 41-305 (622)
55 2z80_A TOLL-like receptor 2, v 99.9 1.5E-24 5.2E-29 229.9 15.6 106 279-386 29-136 (353)
56 1vt4_I APAF-1 related killer D 99.9 1E-24 3.5E-29 245.1 13.7 193 3-240 232-436 (1221)
57 3g06_A SSPH2 (leucine-rich rep 99.9 3E-23 1E-27 232.7 25.2 268 304-755 40-307 (622)
58 3zyi_A Leucine-rich repeat-con 99.9 1.7E-23 5.7E-28 229.7 21.9 66 631-696 237-302 (452)
59 3zyj_A Leucine-rich repeat-con 99.9 2.2E-23 7.6E-28 227.9 21.9 67 631-697 226-292 (440)
60 3zyj_A Leucine-rich repeat-con 99.9 5.8E-23 2E-27 224.5 22.9 245 283-673 45-292 (440)
61 3zyi_A Leucine-rich repeat-con 99.9 9E-23 3.1E-27 223.9 24.2 248 305-721 55-303 (452)
62 3ogk_B Coronatine-insensitive 99.9 8.2E-26 2.8E-30 258.3 -0.7 269 481-767 218-524 (592)
63 2z66_A Variable lymphocyte rec 99.9 1.8E-23 6.1E-28 217.0 16.6 98 285-385 11-112 (306)
64 2z66_A Variable lymphocyte rec 99.9 7.9E-24 2.7E-28 219.7 13.1 246 486-767 10-259 (306)
65 3sfz_A APAF-1, apoptotic pepti 99.9 9.7E-24 3.3E-28 263.2 16.4 216 3-247 225-452 (1249)
66 1ozn_A Reticulon 4 receptor; N 99.9 4E-23 1.4E-27 211.8 17.1 77 307-385 14-91 (285)
67 1ozn_A Reticulon 4 receptor; N 99.9 5.4E-23 1.9E-27 210.8 17.4 221 486-767 14-236 (285)
68 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-23 3.6E-28 219.3 6.4 63 632-695 210-273 (317)
69 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-23 3.6E-28 219.3 6.3 246 478-770 29-276 (317)
70 1wwl_A Monocyte differentiatio 99.9 1.2E-23 4.1E-28 218.4 5.2 83 301-386 40-133 (312)
71 1wwl_A Monocyte differentiatio 99.9 9.5E-23 3.2E-27 211.6 11.0 130 632-766 169-306 (312)
72 3oja_A Leucine-rich immune mol 99.9 5.3E-23 1.8E-27 226.5 8.7 241 477-764 28-270 (487)
73 2p1m_B Transport inhibitor res 99.9 1.3E-24 4.6E-29 248.5 -6.0 281 451-768 210-518 (594)
74 2p1m_B Transport inhibitor res 99.9 4.3E-24 1.5E-28 244.2 -5.1 260 470-764 252-539 (594)
75 3rfs_A Internalin B, repeat mo 99.8 7E-21 2.4E-25 193.2 14.9 209 592-814 39-249 (272)
76 3oja_A Leucine-rich immune mol 99.8 3.3E-21 1.1E-25 212.2 12.6 248 494-795 18-271 (487)
77 1z6t_A APAF-1, apoptotic prote 99.8 5.2E-21 1.8E-25 217.5 14.7 211 3-243 225-448 (591)
78 1p9a_G Platelet glycoprotein I 99.8 2.8E-20 9.6E-25 190.0 16.9 203 275-542 4-208 (290)
79 2o6q_A Variable lymphocyte rec 99.8 2.5E-19 8.4E-24 181.7 21.0 200 484-745 17-218 (270)
80 2z62_A TOLL-like receptor 4, v 99.8 6.9E-20 2.4E-24 186.7 16.9 54 488-544 12-67 (276)
81 2o6q_A Variable lymphocyte rec 99.8 1.4E-19 4.7E-24 183.5 17.4 201 594-802 16-220 (270)
82 3rfs_A Internalin B, repeat mo 99.8 1E-19 3.4E-24 184.7 15.2 117 632-755 129-245 (272)
83 2z62_A TOLL-like receptor 4, v 99.8 1.1E-19 3.6E-24 185.3 15.3 201 594-802 28-239 (276)
84 1p9a_G Platelet glycoprotein I 99.8 6.4E-19 2.2E-23 180.0 18.8 200 480-745 7-208 (290)
85 1h6u_A Internalin H; cell adhe 99.8 1.8E-19 6.2E-24 186.1 13.0 195 277-543 37-231 (308)
86 2xwt_C Thyrotropin receptor; s 99.8 1.5E-18 5E-23 172.6 16.8 205 495-768 23-238 (239)
87 2xwt_C Thyrotropin receptor; s 99.8 1E-18 3.4E-23 173.8 14.3 194 615-820 32-235 (239)
88 2ast_B S-phase kinase-associat 99.8 2.4E-20 8.3E-25 196.4 2.1 255 483-809 47-315 (336)
89 4ay9_X Follicle-stimulating ho 99.8 6.8E-18 2.3E-22 178.0 19.2 67 309-377 14-82 (350)
90 2ca6_A RAN GTPase-activating p 99.8 3.8E-20 1.3E-24 198.6 0.5 117 632-748 183-319 (386)
91 3m19_A Variable lymphocyte rec 99.8 1.1E-17 3.8E-22 167.4 18.0 171 596-767 16-190 (251)
92 1h6u_A Internalin H; cell adhe 99.8 6.2E-18 2.1E-22 174.6 15.8 191 483-746 41-231 (308)
93 3m19_A Variable lymphocyte rec 99.8 1.3E-17 4.5E-22 166.9 17.0 179 615-802 15-194 (251)
94 2ca6_A RAN GTPase-activating p 99.7 2E-19 6.7E-24 193.1 2.2 103 284-386 12-134 (386)
95 4ay9_X Follicle-stimulating ho 99.7 4.5E-17 1.6E-21 171.7 19.7 239 486-765 12-255 (350)
96 4glp_A Monocyte differentiatio 99.7 5E-18 1.7E-22 175.9 11.8 229 280-542 63-307 (310)
97 4glp_A Monocyte differentiatio 99.7 7.7E-18 2.6E-22 174.5 10.3 195 593-800 90-307 (310)
98 2o6s_A Variable lymphocyte rec 99.7 3.3E-17 1.1E-21 158.8 13.4 164 635-812 27-190 (208)
99 3goz_A Leucine-rich repeat-con 99.7 8.3E-19 2.9E-23 186.0 1.6 78 309-386 3-92 (362)
100 1h6t_A Internalin B; cell adhe 99.7 2.5E-17 8.7E-22 168.3 12.2 172 278-543 43-214 (291)
101 2ast_B S-phase kinase-associat 99.7 5.1E-18 1.7E-22 178.6 4.2 216 594-819 70-301 (336)
102 3goz_A Leucine-rich repeat-con 99.7 1.2E-18 4.2E-23 184.8 -2.0 132 636-767 138-295 (362)
103 3cvr_A Invasion plasmid antige 99.7 2.7E-16 9.3E-21 174.0 14.3 179 282-545 60-246 (571)
104 2v9t_B SLIT homolog 2 protein 99.7 8.1E-16 2.8E-20 149.9 15.2 132 636-767 32-163 (220)
105 4ezg_A Putative uncharacterize 99.7 6.3E-16 2.1E-20 148.2 13.8 150 592-766 42-191 (197)
106 3cvr_A Invasion plasmid antige 99.7 7.5E-16 2.6E-20 170.4 15.5 187 483-754 59-252 (571)
107 1h6t_A Internalin B; cell adhe 99.6 8.1E-16 2.8E-20 157.1 14.3 166 592-767 44-211 (291)
108 2v70_A SLIT-2, SLIT homolog 2 99.6 1.2E-15 4.2E-20 148.6 14.5 130 638-767 34-164 (220)
109 4ezg_A Putative uncharacterize 99.6 7.9E-16 2.7E-20 147.5 12.8 156 632-801 40-195 (197)
110 2xot_A Amphoterin-induced prot 99.6 4.6E-16 1.6E-20 164.6 12.3 172 284-542 21-202 (361)
111 1m9s_A Internalin B; cell inva 99.6 3.1E-16 1.1E-20 175.7 10.8 173 505-748 41-213 (605)
112 2o6s_A Variable lymphocyte rec 99.6 4.6E-15 1.6E-19 143.7 16.7 144 631-787 47-190 (208)
113 3e6j_A Variable lymphocyte rec 99.6 2.9E-15 9.9E-20 147.1 14.6 131 636-767 40-170 (229)
114 1xeu_A Internalin C; cellular 99.6 2.9E-16 1E-20 157.7 7.0 169 280-543 18-186 (263)
115 1m9s_A Internalin B; cell inva 99.6 2.1E-15 7.1E-20 169.0 14.6 166 592-767 41-208 (605)
116 2v70_A SLIT-2, SLIT homolog 2 99.6 4.3E-15 1.5E-19 144.8 14.9 150 597-747 14-168 (220)
117 2xot_A Amphoterin-induced prot 99.6 3.2E-15 1.1E-19 158.2 13.5 170 597-767 21-200 (361)
118 2v9t_B SLIT homolog 2 protein 99.6 8E-15 2.7E-19 142.9 14.1 153 639-801 14-166 (220)
119 3e6j_A Variable lymphocyte rec 99.6 3.3E-14 1.1E-18 139.6 15.4 135 613-748 39-175 (229)
120 1dce_A Protein (RAB geranylger 99.6 7.7E-17 2.6E-21 179.6 -4.8 38 324-361 346-383 (567)
121 2ell_A Acidic leucine-rich nuc 99.5 1.6E-14 5.4E-19 134.5 11.2 134 280-414 23-163 (168)
122 2je0_A Acidic leucine-rich nuc 99.5 7.8E-15 2.7E-19 133.5 7.3 127 279-406 15-148 (149)
123 2je0_A Acidic leucine-rich nuc 99.5 7.2E-15 2.5E-19 133.8 6.3 129 634-764 15-148 (149)
124 1xeu_A Internalin C; cellular 99.5 1.4E-14 4.8E-19 145.4 8.9 165 592-767 17-183 (263)
125 1w8a_A SLIT protein; signaling 99.5 2.2E-14 7.4E-19 136.5 9.6 125 284-410 11-138 (192)
126 2ell_A Acidic leucine-rich nuc 99.5 1.7E-14 5.9E-19 134.3 8.6 132 634-767 22-158 (168)
127 2wfh_A SLIT homolog 2 protein 99.5 3.6E-14 1.2E-18 134.9 10.3 126 284-411 13-139 (193)
128 3sb4_A Hypothetical leucine ri 99.5 4.4E-14 1.5E-18 147.4 11.7 102 659-762 225-327 (329)
129 1a9n_A U2A', U2A'; complex (nu 99.5 6.2E-14 2.1E-18 131.5 9.0 132 275-410 13-152 (176)
130 1w8a_A SLIT protein; signaling 99.5 2.3E-13 7.9E-18 129.4 11.9 111 637-747 30-141 (192)
131 4b8c_D Glucose-repressible alc 99.4 1.3E-14 4.6E-19 167.0 1.8 123 273-396 216-338 (727)
132 4fs7_A Uncharacterized protein 99.4 1.9E-11 6.5E-16 130.9 24.6 55 481-537 160-216 (394)
133 3sb4_A Hypothetical leucine ri 99.4 2.4E-13 8.2E-18 141.8 9.5 103 707-818 225-328 (329)
134 2wfh_A SLIT homolog 2 protein 99.4 8.7E-13 3E-17 125.3 12.5 125 639-767 13-137 (193)
135 1dce_A Protein (RAB geranylger 99.4 4.5E-13 1.5E-17 149.2 10.0 136 276-414 404-549 (567)
136 2o6r_A Variable lymphocyte rec 99.4 2.7E-12 9.2E-17 120.4 13.2 110 636-745 28-137 (177)
137 1ds9_A Outer arm dynein; leuci 99.4 9.4E-15 3.2E-19 140.1 -4.0 142 261-404 23-180 (198)
138 2o6r_A Variable lymphocyte rec 99.4 2.6E-12 8.8E-17 120.5 12.9 127 638-767 9-135 (177)
139 1a9n_A U2A', U2A'; complex (nu 99.4 3.8E-13 1.3E-17 126.0 6.4 135 631-770 14-154 (176)
140 4fdw_A Leucine rich hypothetic 99.4 3.3E-11 1.1E-15 128.1 20.8 236 484-765 136-379 (401)
141 4b8c_D Glucose-repressible alc 99.3 1.3E-12 4.3E-17 150.6 8.4 123 288-412 208-330 (727)
142 4fs7_A Uncharacterized protein 99.3 8.6E-11 3E-15 125.7 22.2 102 631-737 292-393 (394)
143 4fdw_A Leucine rich hypothetic 99.3 3.7E-11 1.3E-15 127.7 19.0 170 614-795 203-379 (401)
144 3g39_A Variable lymphocyte rec 99.3 5.7E-12 2E-16 116.9 9.7 103 283-387 11-115 (170)
145 2r9u_A Variable lymphocyte rec 99.3 6.5E-12 2.2E-16 116.9 9.6 102 284-387 15-118 (174)
146 3g39_A Variable lymphocyte rec 99.2 1.3E-11 4.4E-16 114.5 9.2 107 305-413 10-117 (170)
147 2r9u_A Variable lymphocyte rec 99.2 1.5E-11 5E-16 114.5 9.2 107 306-414 14-121 (174)
148 1ds9_A Outer arm dynein; leuci 99.2 1.3E-13 4.3E-18 132.2 -7.3 126 282-410 24-152 (198)
149 4gt6_A Cell surface protein; l 99.1 1.3E-08 4.4E-13 108.7 24.2 126 631-763 260-385 (394)
150 4gt6_A Cell surface protein; l 99.0 1.9E-08 6.4E-13 107.5 22.2 107 631-743 283-389 (394)
151 2ifg_A High affinity nerve gro 99.0 6.7E-10 2.3E-14 116.8 9.3 100 285-386 12-115 (347)
152 2ifg_A High affinity nerve gro 98.9 1.5E-09 5.2E-14 114.0 9.6 103 308-412 12-117 (347)
153 3un9_A NLR family member X1; l 98.9 2.8E-11 9.7E-16 127.3 -6.0 155 613-767 71-250 (372)
154 3un9_A NLR family member X1; l 98.9 1.1E-10 3.7E-15 122.8 -2.6 160 593-752 71-259 (372)
155 4h09_A Hypothetical leucine ri 98.7 5.4E-06 1.8E-10 87.9 25.9 106 655-763 235-340 (379)
156 2ra8_A Uncharacterized protein 98.6 2.1E-08 7.1E-13 104.3 4.7 60 707-766 251-317 (362)
157 4h09_A Hypothetical leucine ri 98.6 6E-06 2E-10 87.6 23.1 171 631-814 189-359 (379)
158 2ra8_A Uncharacterized protein 98.6 3.8E-08 1.3E-12 102.4 5.7 155 592-747 137-322 (362)
159 1io0_A Tropomodulin; LRR prote 98.3 1.6E-07 5.5E-12 87.9 2.2 110 277-386 32-163 (185)
160 3e4g_A ATP synthase subunit S, 98.3 3.7E-07 1.3E-11 82.7 3.8 38 733-770 115-153 (176)
161 3rw6_A Nuclear RNA export fact 98.2 1.6E-07 5.6E-12 92.1 0.6 63 303-366 169-236 (267)
162 1io0_A Tropomodulin; LRR prote 98.2 5.5E-07 1.9E-11 84.3 2.2 112 632-743 32-162 (185)
163 3e4g_A ATP synthase subunit S, 98.1 2.1E-06 7.3E-11 77.7 5.2 86 661-746 62-153 (176)
164 3rw6_A Nuclear RNA export fact 98.1 3.9E-07 1.3E-11 89.4 0.2 104 300-405 137-258 (267)
165 2qen_A Walker-type ATPase; unk 98.0 0.00011 3.8E-09 76.7 17.6 184 12-219 128-333 (350)
166 1w5s_A Origin recognition comp 97.9 0.00012 4.1E-09 78.4 15.0 200 4-220 128-372 (412)
167 2fna_A Conserved hypothetical 97.9 0.00017 5.7E-09 75.6 15.2 184 12-219 137-341 (357)
168 1njg_A DNA polymerase III subu 97.4 0.00075 2.6E-08 66.2 11.1 106 10-118 124-231 (250)
169 2qby_B CDC6 homolog 3, cell di 97.2 0.0098 3.4E-07 62.6 18.2 194 3-220 124-340 (384)
170 2v1u_A Cell division control p 97.2 0.016 5.6E-07 60.9 19.2 216 3-239 119-373 (387)
171 3rfe_A Platelet glycoprotein I 96.8 0.0015 5.2E-08 56.3 5.9 53 308-362 12-67 (130)
172 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00051 1.8E-08 63.4 2.5 107 279-385 39-168 (197)
173 1hqc_A RUVB; extended AAA-ATPa 96.5 0.011 3.6E-07 60.7 10.8 188 12-217 90-323 (324)
174 2qby_A CDC6 homolog 1, cell di 96.4 0.042 1.4E-06 57.7 15.1 199 4-219 118-348 (386)
175 2chg_A Replication factor C sm 96.4 0.013 4.5E-07 56.0 10.1 104 11-117 101-206 (226)
176 1fnn_A CDC6P, cell division co 96.2 0.095 3.2E-06 55.1 16.6 191 11-220 124-352 (389)
177 1pgv_A TMD-1, tropomodulin TMD 96.1 0.0033 1.1E-07 58.0 3.5 86 300-385 37-137 (197)
178 3rfe_A Platelet glycoprotein I 96.0 0.0094 3.2E-07 51.2 5.8 55 330-386 11-67 (130)
179 1sxj_B Activator 1 37 kDa subu 95.6 0.034 1.2E-06 56.8 9.2 105 10-117 105-212 (323)
180 1iqp_A RFCS; clamp loader, ext 94.0 0.25 8.6E-06 50.3 10.8 102 11-118 109-215 (327)
181 1jr3_A DNA polymerase III subu 91.7 0.77 2.6E-05 47.6 10.7 104 10-116 117-222 (373)
182 2chq_A Replication factor C sm 90.3 1.5 5.1E-05 44.1 11.1 102 11-115 101-204 (319)
183 2z4s_A Chromosomal replication 90.1 1.4 4.7E-05 46.8 10.8 124 6-132 188-331 (440)
184 3bos_A Putative DNA replicatio 88.4 0.56 1.9E-05 45.0 5.9 101 12-115 104-217 (242)
185 1a5t_A Delta prime, HOLB; zinc 84.8 3.5 0.00012 41.8 9.8 96 11-114 107-204 (334)
186 1sxj_E Activator 1 40 kDa subu 84.6 3.1 0.0001 42.6 9.3 102 12-115 134-237 (354)
187 1sxj_D Activator 1 41 kDa subu 80.4 10 0.00034 38.6 11.4 99 11-115 132-235 (353)
188 1d2n_A N-ethylmaleimide-sensit 77.2 13 0.00044 36.1 10.5 113 10-130 122-258 (272)
189 1sxj_A Activator 1 95 kDa subu 73.7 5.8 0.0002 43.0 7.5 102 11-117 147-255 (516)
190 3pfi_A Holliday junction ATP-d 72.3 29 0.00099 34.8 12.1 99 11-114 105-226 (338)
191 3h4m_A Proteasome-activating n 68.7 12 0.0004 36.7 7.9 99 10-112 108-228 (285)
192 1jr3_D DNA polymerase III, del 63.4 26 0.00088 35.4 9.5 101 10-113 74-183 (343)
193 3syl_A Protein CBBX; photosynt 62.1 17 0.00058 36.0 7.7 70 12-83 130-218 (309)
194 1l8q_A Chromosomal replication 60.5 23 0.0008 35.3 8.4 91 13-108 99-201 (324)
195 3uk6_A RUVB-like 2; hexameric 56.1 51 0.0017 33.4 10.3 92 14-112 191-300 (368)
196 2qp9_X Vacuolar protein sortin 55.5 98 0.0033 31.2 12.1 100 11-115 142-261 (355)
197 3u61_B DNA polymerase accessor 54.2 34 0.0012 34.0 8.4 102 11-117 104-219 (324)
198 2qz4_A Paraplegin; AAA+, SPG7, 54.1 59 0.002 30.9 9.9 97 11-109 97-215 (262)
199 3eie_A Vacuolar protein sortin 52.2 1.2E+02 0.0043 29.8 12.2 100 11-115 109-228 (322)
200 1sxj_C Activator 1 40 kDa subu 49.9 58 0.002 32.7 9.3 95 11-111 109-208 (340)
201 3te6_A Regulatory protein SIR3 48.9 1.2E+02 0.0043 29.9 11.2 72 10-82 130-211 (318)
202 1g5t_A COB(I)alamin adenosyltr 47.5 14 0.00047 33.6 3.6 51 2-52 109-163 (196)
203 2lz0_A Uncharacterized protein 47.1 52 0.0018 26.0 6.6 38 703-741 15-52 (100)
204 2lz0_A Uncharacterized protein 44.7 20 0.0007 28.4 3.8 37 322-359 15-52 (100)
205 2gno_A DNA polymerase III, gam 42.5 22 0.00075 35.2 4.6 71 11-82 81-152 (305)
206 1jbk_A CLPB protein; beta barr 33.3 25 0.00085 31.4 3.1 67 10-78 113-194 (195)
207 3d8b_A Fidgetin-like protein 1 33.1 2E+02 0.0067 28.9 10.2 101 11-116 175-296 (357)
208 3pvs_A Replication-associated 31.4 1.5E+02 0.0052 31.0 9.1 102 10-113 104-213 (447)
209 2c9o_A RUVB-like 1; hexameric 30.7 1.4E+02 0.0047 31.3 8.8 92 15-113 298-408 (456)
210 2vda_B Maltoporin; sugar trans 30.6 31 0.0011 18.8 1.8 17 105-121 9-25 (28)
211 2zan_A Vacuolar protein sortin 29.6 3E+02 0.01 28.6 11.2 100 11-115 226-345 (444)
212 1xwi_A SKD1 protein; VPS4B, AA 28.8 4.2E+02 0.014 25.9 12.2 101 10-115 103-223 (322)
213 2kjq_A DNAA-related protein; s 26.8 30 0.001 29.8 2.3 40 12-51 83-124 (149)
214 3b9p_A CG5977-PA, isoform A; A 26.7 4.3E+02 0.015 25.3 11.7 100 10-114 111-232 (297)
215 3vfd_A Spastin; ATPase, microt 26.3 4.4E+02 0.015 26.6 11.6 69 42-115 252-326 (389)
216 2lci_A Protein OR36; structura 23.7 2.2E+02 0.0074 21.5 6.0 100 2-106 15-126 (134)
217 3hu3_A Transitional endoplasmi 22.6 1.6E+02 0.0054 31.3 7.4 102 9-114 294-414 (489)
218 3ec2_A DNA replication protein 22.5 45 0.0015 29.6 2.7 39 13-51 101-142 (180)
219 3cf0_A Transitional endoplasmi 22.1 2.8E+02 0.0097 26.8 8.8 96 11-110 107-223 (301)
220 2bjv_A PSP operon transcriptio 20.5 1.6E+02 0.0053 28.0 6.4 39 13-51 101-150 (265)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5e-50 Score=469.65 Aligned_cols=408 Identities=18% Similarity=0.111 Sum_probs=223.3
Q ss_pred CcccCCCCccEEEeecccccc-cCc--cccCCceeEEEEeCCCCCc-ccCccc-cCcccccEEeccCcccccc-ccc---
Q 003435 275 STIPRARKLRTLLFLTVKMEN-LSF--PCQEFQCLRVLDLGQSGII-KLPDSI-GTLKHLRYLDLSHTYIRKI-PGS--- 345 (820)
Q Consensus 275 ~~~~~~~~L~~L~l~~n~~~~-l~~--~~~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~i~~l-p~~--- 345 (820)
..+..+++|++|++++|.+.. +|. .+..+++|++|+|++|.+. .+|..+ .++++|++|+|++|.++.. |..
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 173 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhh
Confidence 467888888888888888764 555 5788888899999888887 345444 7888899999988888855 444
Q ss_pred cccCCcccEEeccCCCCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCccc----cccccccc
Q 003435 346 ISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRF----CAGLGELK 421 (820)
Q Consensus 346 ~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~----~~~l~~L~ 421 (820)
+.++++|++|++++|.+.+..| ++.+++|++|++++|.+.+.+|. ++++++|++|++..+.+... ...+++|+
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 250 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELK 250 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCC
T ss_pred hccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCC
Confidence 7888889999999888776665 37888999999999987777776 88899999998887776532 24667788
Q ss_pred cCCCCCceeecccCCCCChhhhhhhccccccccceeeEEeccCCccChhh------------------HHHHhhccCCCC
Q 003435 422 LLDLRGRLEIKNLENLKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDK------------------AQALIEFLRPPH 483 (820)
Q Consensus 422 ~L~l~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~------------------~~~~~~~l~~~~ 483 (820)
.|+++++........ ..+.+|+.|++++|......... ...++..+..++
T Consensus 251 ~L~Ls~n~l~~~~~~------------~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 318 (768)
T 3rgz_A 251 LLNISSNQFVGPIPP------------LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318 (768)
T ss_dssp EEECCSSCCEESCCC------------CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT
T ss_pred EEECCCCcccCccCc------------cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCC
Confidence 887776532211111 13344555555444322100000 001112233334
Q ss_pred CCcEEEEecCCCC-CCCcccccCCCCccEEEecccccC-CCCC-CCCCC-CCcceeeccCcCceEeCccccCCCcccCCC
Q 003435 484 NLKVLDLKGYRGS-VFPSWLNSGVPNLVKVSLVDCTCQ-ELPP-LGQLP-NLKDLYVKGMSAVQIIGYKFYGNDAIRGFP 559 (820)
Q Consensus 484 ~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~L~~n~~~-~l~~-l~~l~-~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~ 559 (820)
+|++|++++|.+. .+|...+..+++|++|++++|.++ .+|. +..++ +|+.|++++|.+.......+. ...++
T Consensus 319 ~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~----~~~~~ 394 (768)
T 3rgz_A 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC----QNPKN 394 (768)
T ss_dssp TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTT----CSTTC
T ss_pred CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhh----hcccC
Confidence 4444444444433 333332334444444444444333 2222 33333 444444444443332211110 01144
Q ss_pred CcceeecCCC-------------cccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCC----CCCcCceEec
Q 003435 560 SLKLLQLFDM-------------PNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPF----IRNLKNLALC 622 (820)
Q Consensus 560 ~L~~L~l~~~-------------~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----l~~L~~L~l~ 622 (820)
+|++|++.++ ++|+.+..+.+...+..+..+..+++|++|++++|.+.+.+|. +++|+.|+++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence 5555555443 1222222222222223333333444555555555544444332 4445555555
Q ss_pred ccC--CccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccC
Q 003435 623 NSN--DKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESL 700 (820)
Q Consensus 623 ~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 700 (820)
+|. +..+..+..+++|++|++++|.+.+.+|..++.+++|++|++++|++.+.+|..+..+++|++|++++|++.+.+
T Consensus 475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence 554 233444455555555555555555555555555555555555555555555555555555555555555444433
Q ss_pred c
Q 003435 701 P 701 (820)
Q Consensus 701 ~ 701 (820)
|
T Consensus 555 p 555 (768)
T 3rgz_A 555 P 555 (768)
T ss_dssp C
T ss_pred C
Confidence 3
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.8e-48 Score=453.67 Aligned_cols=524 Identities=19% Similarity=0.144 Sum_probs=383.9
Q ss_pred CceeEEEeecc-C---CCC--cccCCCCccEEEeecccccccCc-c-ccCCceeEEEEeCCCCCccc-Ccc---ccCccc
Q 003435 261 TDIRHCTLVGD-L---SSS--TIPRARKLRTLLFLTVKMENLSF-P-CQEFQCLRVLDLGQSGIIKL-PDS---IGTLKH 328 (820)
Q Consensus 261 ~~~~~l~l~~~-~---~~~--~~~~~~~L~~L~l~~n~~~~l~~-~-~~~l~~L~~L~L~~n~l~~l-p~~---~~~l~~ 328 (820)
..++++.+.++ + .+. .+..+++|++|++++|.+..... . +..+++|++|+|++|.++.. |.. +.++++
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~ 179 (768)
T 3rgz_A 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179 (768)
T ss_dssp TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTT
T ss_pred CCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCC
Confidence 45667777665 1 122 57778888888888877654333 2 36777788888887777744 333 566677
Q ss_pred ccEEeccCccccccccccccCCcccEEeccCCCCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceee
Q 003435 329 LRYLDLSHTYIRKIPGSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFIL 408 (820)
Q Consensus 329 L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~ 408 (820)
|++|++++|.++.... +..+++|++|++++|.+.+.+|. ++++++|++|++++|.+.+.+|..+.++++|+.|++..+
T Consensus 180 L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 257 (768)
T 3rgz_A 180 LKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257 (768)
T ss_dssp CCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSS
T ss_pred CCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCC
Confidence 7777777776664322 26666677777776666665655 666666777777666666666666666666666666555
Q ss_pred CCcccc--ccccccccCCCCCceeecccC--------CCC-------ChhhhhhhccccccccceeeEEeccCC-ccChh
Q 003435 409 GKQRFC--AGLGELKLLDLRGRLEIKNLE--------NLK-------NVVDAEEAKLHDKVHIRSLGLSWSRNA-QMRDD 470 (820)
Q Consensus 409 ~~~~~~--~~l~~L~~L~l~~~~~~~~l~--------~~~-------~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~ 470 (820)
...... ..+++|+.|++.++.....+. .+. .+.......+..+..|+.|++++|... .+..
T Consensus 258 ~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~- 336 (768)
T 3rgz_A 258 QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM- 336 (768)
T ss_dssp CCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCH-
T ss_pred cccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCH-
Confidence 443211 134455555555443211110 000 011122344667788888888877643 1111
Q ss_pred hHHHHhhccCCCCCCcEEEEecCCCC-CCCcccccCCCCccEEEecccccCC-CCC-CCC--CCCCcceeeccCcCceEe
Q 003435 471 KAQALIEFLRPPHNLKVLDLKGYRGS-VFPSWLNSGVPNLVKVSLVDCTCQE-LPP-LGQ--LPNLKDLYVKGMSAVQII 545 (820)
Q Consensus 471 ~~~~~~~~l~~~~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~L~~n~~~~-l~~-l~~--l~~L~~L~L~~n~~~~~~ 545 (820)
..+..+++|++|++++|.+. .+|..+....++|+.|++++|.+++ ++. +.. +++|+.|++++|.+.+..
T Consensus 337 ------~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 410 (768)
T 3rgz_A 337 ------DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410 (768)
T ss_dssp ------HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEEC
T ss_pred ------HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccccc
Confidence 22667889999999999986 6777665333499999999997654 333 555 889999999999988765
Q ss_pred CccccCCCcccCCCCcceeecCCC-------------cccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCC
Q 003435 546 GYKFYGNDAIRGFPSLKLLQLFDM-------------PNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPF 612 (820)
Q Consensus 546 ~~~~~~~~~~~~l~~L~~L~l~~~-------------~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 612 (820)
+. .+..+++|+.|+++++ ++|+.+....+...+..+..+..+++|++|++++|.+.+.+|.
T Consensus 411 p~------~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 484 (768)
T 3rgz_A 411 PP------TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484 (768)
T ss_dssp CG------GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred CH------HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCH
Confidence 43 3456788888888764 3455555555666666677777899999999999999887774
Q ss_pred ----CCCcCceEecccC--CccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCc
Q 003435 613 ----IRNLKNLALCNSN--DKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSL 686 (820)
Q Consensus 613 ----l~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 686 (820)
+++|+.|++++|. +..+..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+.....+
T Consensus 485 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~ 564 (768)
T 3rgz_A 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTC
T ss_pred HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccch
Confidence 7899999999998 4677889999999999999999999999999999999999999999998888765544333
Q ss_pred c----------------------------------------------eEeeccCcccccCccccCCCCcccEEEecCCCC
Q 003435 687 R----------------------------------------------HLSILHCDKLESLPMSLEKFCSLQKLDIVECPR 720 (820)
Q Consensus 687 ~----------------------------------------------~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~ 720 (820)
. .+++..|...+.+|..+..+++|++|++++|++
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l 644 (768)
T 3rgz_A 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644 (768)
T ss_dssp BCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC
T ss_pred hhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcc
Confidence 3 233444666677788889999999999999999
Q ss_pred CCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCchhhHHHhccccCCCcccccCCceeEecCceeee
Q 003435 721 LVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDPIAQMEVVSMTTLNLMA 800 (820)
Q Consensus 721 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~l~l~~~n~~~ 800 (820)
.+.+|..++++++|+.|++++|.+.+.+|..++++++|++|++++ |++++..|..+..++.|++|++++ |.++
T Consensus 645 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~------N~l~g~ip~~l~~l~~L~~L~ls~-N~l~ 717 (768)
T 3rgz_A 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS------NKLDGRIPQAMSALTMLTEIDLSN-NNLS 717 (768)
T ss_dssp BSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS------SCCEECCCGGGGGCCCCSEEECCS-SEEE
T ss_pred cccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCC------CcccCcCChHHhCCCCCCEEECcC-Cccc
Confidence 999999999999999999999999999999999999999999988 557778889999999999999999 9999
Q ss_pred ccCCCc
Q 003435 801 DEVPTE 806 (820)
Q Consensus 801 ~~~~~~ 806 (820)
|.+|..
T Consensus 718 g~iP~~ 723 (768)
T 3rgz_A 718 GPIPEM 723 (768)
T ss_dssp EECCSS
T ss_pred ccCCCc
Confidence 999864
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.8e-45 Score=428.08 Aligned_cols=504 Identities=19% Similarity=0.134 Sum_probs=239.8
Q ss_pred CCccEEEeecccccccCcc-ccCCceeEEEEeCCCCCccc-CccccCcccccEEeccCcccccccc-ccccCCcccEEec
Q 003435 281 RKLRTLLFLTVKMENLSFP-CQEFQCLRVLDLGQSGIIKL-PDSIGTLKHLRYLDLSHTYIRKIPG-SISKLKHLQTLDL 357 (820)
Q Consensus 281 ~~L~~L~l~~n~~~~l~~~-~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~-~~~~L~~L~~L~L 357 (820)
+++++|++++|.+..++.. |..+++|++|+|++|.+..+ |..|+++++|++|+|++|.++.+|. .|+++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 3455555555555555443 45555555555555555543 3344555555555555555555543 3555555555555
Q ss_pred cCCCCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCccccc------cccccccCCCCCceee
Q 003435 358 SNCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCA------GLGELKLLDLRGRLEI 431 (820)
Q Consensus 358 ~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~------~l~~L~~L~l~~~~~~ 431 (820)
++|.+.+..|..|+++++|++|++++|.+.+..|..++++++|++|++..+.+..... .++.|+.|+++++. +
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l 183 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-I 183 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC-C
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc-c
Confidence 5544443333445555555555555555444444445555555555544443332211 12344444444321 0
Q ss_pred cccCCCCChhhhhhhccccc---------------------------cccceeeEEeccCCccChhhHHHHhhccCCC--
Q 003435 432 KNLENLKNVVDAEEAKLHDK---------------------------VHIRSLGLSWSRNAQMRDDKAQALIEFLRPP-- 482 (820)
Q Consensus 432 ~~l~~~~~~~~~~~~~l~~~---------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~-- 482 (820)
. ......+..+ ..++.|+++++........ .+..+
T Consensus 184 ~---------~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~-------~~~~l~~ 247 (680)
T 1ziw_A 184 K---------EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT-------TFLGLKW 247 (680)
T ss_dssp C---------CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT-------TTGGGGG
T ss_pred c---------ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh-------HhhccCc
Confidence 0 0111112223 3445555544433222111 11111
Q ss_pred CCCcEEEEecCCCCCCCcccccCCCCccEEEecccccCCCCC--CCCCCCCcceeeccCcCceEeCc---cccCCCcccC
Q 003435 483 HNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELPP--LGQLPNLKDLYVKGMSAVQIIGY---KFYGNDAIRG 557 (820)
Q Consensus 483 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~--l~~l~~L~~L~L~~n~~~~~~~~---~~~~~~~~~~ 557 (820)
++|+.|++++|.+..+++..+..+++|++|++++|.+..+++ ++.+++|+.|++++|........ .......+..
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~ 327 (680)
T 1ziw_A 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTT
T ss_pred CCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhccc
Confidence 235555555555555444444455555555555555544432 55555555555554432211000 0000112233
Q ss_pred CCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCC-CCCC-------CCCcCceEecccC--Cc
Q 003435 558 FPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLN-TLPF-------IRNLKNLALCNSN--DK 627 (820)
Q Consensus 558 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~-------l~~L~~L~l~~~~--~~ 627 (820)
+++|++|++.+ +......+..+..+++|++|++++|.... .++. .++|+.|++++|. ..
T Consensus 328 l~~L~~L~l~~-----------n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~ 396 (680)
T 1ziw_A 328 LKCLEHLNMED-----------NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396 (680)
T ss_dssp CTTCCEEECCS-----------CCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEE
T ss_pred CCCCCEEECCC-----------CccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeE
Confidence 44444444433 33333334445566667777766664321 1111 1355666666555 22
Q ss_pred cccccCCCCCcceEEccCCCCCcccc-ccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCccc--ccCcccc
Q 003435 628 LVCSLSRFPSLSSLVVDNFPELNCLS-DKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKL--ESLPMSL 704 (820)
Q Consensus 628 ~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~l 704 (820)
.+..+..+++|+.|++++|.+.+.++ ..+.++++|++|++++|++.+..+..+..+++|++|++++|.+. +.+|..+
T Consensus 397 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~ 476 (680)
T 1ziw_A 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc
Confidence 23455566666666666666554433 45556666666666666555444445555555555555555443 3445555
Q ss_pred CCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCccccc--------ccccCCCCcceEEEeCCchhhHHHhcc
Q 003435 705 EKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSL--------KSIEFLGQLQRLVIKKCPQLERQRLMN 776 (820)
Q Consensus 705 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--------~~~~~l~~L~~L~l~~~~~L~~~~~~~ 776 (820)
..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+ ..+.++++|++|++++| .+..
T Consensus 477 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N------~l~~ 550 (680)
T 1ziw_A 477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN------GFDE 550 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS------CCCC
T ss_pred ccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC------CCCC
Confidence 555555555555555555444555555555555555555544311 12455555555555553 2223
Q ss_pred ccCCCcccccCCceeEecCceeeeccCCCcccccchhhhhhcC
Q 003435 777 ALHESFDPIAQMEVVSMTTLNLMADEVPTETDAGASLREKNKH 819 (820)
Q Consensus 777 ~~~~~~~~l~~L~~l~l~~~n~~~~~~~~~~~~~~~L~~L~L~ 819 (820)
.....|..+++|+.|++++ |.+++..+..|..+++|++|+|+
T Consensus 551 i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~ 592 (680)
T 1ziw_A 551 IPVEVFKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQ 592 (680)
T ss_dssp CCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCHHHcccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECC
Confidence 3333455555555555555 55555545555555555555554
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.7e-45 Score=426.54 Aligned_cols=533 Identities=19% Similarity=0.138 Sum_probs=397.8
Q ss_pred CCCCceeEEEeecc----CCCCcccCCCCccEEEeecccccccCcc-ccCCceeEEEEeCCCCCcccCc-cccCcccccE
Q 003435 258 NIHTDIRHCTLVGD----LSSSTIPRARKLRTLLFLTVKMENLSFP-CQEFQCLRVLDLGQSGIIKLPD-SIGTLKHLRY 331 (820)
Q Consensus 258 ~~~~~~~~l~l~~~----~~~~~~~~~~~L~~L~l~~n~~~~l~~~-~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~ 331 (820)
.++.+++++.+.++ ++...|.++++|++|++++|.+..++.. |..+++|++|+|++|.++.+|. .|+++++|++
T Consensus 22 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 22 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence 34568899999887 3566799999999999999999998766 8999999999999999999986 5999999999
Q ss_pred EeccCccccccc-cccccCCcccEEeccCCCCccccchhccCCCCCcEEecCCCCCccccCcccC--CCCCCCccCceee
Q 003435 332 LDLSHTYIRKIP-GSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIG--KLRPLRKLPAFIL 408 (820)
Q Consensus 332 L~Ls~n~i~~lp-~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~--~l~~L~~L~~~~~ 408 (820)
|+|++|.++.+| ..|+++++|++|++++|.+.+..|..++++++|++|++++|.+.+..+..+. .+++|+.|++..+
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred EECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence 999999999885 7899999999999999998888888899999999999999987666665543 5688999988777
Q ss_pred CCcccc----ccccccccCCCCCcee----------------ecccCCC-CChhhhhhhcccccc--ccceeeEEeccCC
Q 003435 409 GKQRFC----AGLGELKLLDLRGRLE----------------IKNLENL-KNVVDAEEAKLHDKV--HIRSLGLSWSRNA 465 (820)
Q Consensus 409 ~~~~~~----~~l~~L~~L~l~~~~~----------------~~~l~~~-~~~~~~~~~~l~~~~--~L~~L~l~~~~~~ 465 (820)
...... ..+.+|+.+.+.++.. +..+.-- ..+.......+.++. +|+.|++++|...
T Consensus 182 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence 654432 2344444444332110 0000000 011111223344444 4999999988765
Q ss_pred ccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEecccccC------CCC-----CCCCCCCCcce
Q 003435 466 QMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQ------ELP-----PLGQLPNLKDL 534 (820)
Q Consensus 466 ~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~------~l~-----~l~~l~~L~~L 534 (820)
... +..+..+++|++|++++|.+..+++..+..+++|+.|++++|... .+| .++.+++|+.|
T Consensus 262 ~~~-------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L 334 (680)
T 1ziw_A 262 VVG-------NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334 (680)
T ss_dssp EEC-------TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred ccC-------cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence 432 245677899999999999988877766778999999999987433 344 37889999999
Q ss_pred eeccCcCceEeCccccCCCcccCCCCcceeecCCCcc-cccccccccCCCccCCCCCC--CCCcccEEEEcCCCCCCCCC
Q 003435 535 YVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPN-LMEWKGQMTEGTDEFDGMQE--PFPCLEKLVVEGCSMLNTLP 611 (820)
Q Consensus 535 ~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~ 611 (820)
++++|.+....+ ..+..+++|++|+++++.. +..+. ...+. ..++|+.|++++|.+.+..|
T Consensus 335 ~l~~n~l~~~~~------~~~~~l~~L~~L~Ls~n~~~~~~l~----------~~~f~~~~~~~L~~L~L~~n~l~~~~~ 398 (680)
T 1ziw_A 335 NMEDNDIPGIKS------NMFTGLINLKYLSLSNSFTSLRTLT----------NETFVSLAHSPLHILNLTKNKISKIES 398 (680)
T ss_dssp ECCSCCBCCCCT------TTTTTCTTCCEEECTTCBSCCCEEC----------TTTTGGGTTSCCCEEECTTSCCCEECT
T ss_pred ECCCCccCCCCh------hHhccccCCcEEECCCCchhhhhcc----------hhhhcccccCcCceEECCCCCCCeECh
Confidence 999998877543 3346789999999987631 11111 01111 23578888888887765433
Q ss_pred ----CCCCcCceEecccCCc--c-ccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCc--cchhhhcCC
Q 003435 612 ----FIRNLKNLALCNSNDK--L-VCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNL--ESLFVFMQS 682 (820)
Q Consensus 612 ----~l~~L~~L~l~~~~~~--~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~--~~~~~~~~~ 682 (820)
.+++|+.|++++|... . ...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. +..|..+..
T Consensus 399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~ 478 (680)
T 1ziw_A 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc
Confidence 3778888888888732 2 256778888888888888888777778888888888888888765 456677888
Q ss_pred CCCcceEeeccCcccccCccccCCCCcccEEEecCCCCCCccc--------cccCCCCCccEEEeccCCCcccccccccC
Q 003435 683 FSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLVHIP--------DIMGQHSSLLELSIEGCPMLKLSLKSIEF 754 (820)
Q Consensus 683 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~--------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 754 (820)
+++|++|++++|.+.+..+..+.++++|++|++++|++.+..+ ..+.++++|++|++++|.+....+..|.+
T Consensus 479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~ 558 (680)
T 1ziw_A 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccc
Confidence 8888888888888777666778888888888888887765321 23677888888888888887665667888
Q ss_pred CCCcceEEEeCCchhhHHHhccccCCCcccccCCceeEecCceeeeccCCCccc-ccchhhhhhcCC
Q 003435 755 LGQLQRLVIKKCPQLERQRLMNALHESFDPIAQMEVVSMTTLNLMADEVPTETD-AGASLREKNKHG 820 (820)
Q Consensus 755 l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~l~l~~~n~~~~~~~~~~~-~~~~L~~L~L~~ 820 (820)
+++|++|++++| ++....+..|..+++|+.|++++ |.+++..|..+. .+++|++|++++
T Consensus 559 l~~L~~L~Ls~N------~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 559 LFELKIIDLGLN------NLNTLPASVFNNQVSLKSLNLQK-NLITSVEKKVFGPAFRNLTELDMRF 618 (680)
T ss_dssp CTTCCEEECCSS------CCCCCCTTTTTTCTTCCEEECTT-SCCCBCCHHHHHHHHTTCSEEECTT
T ss_pred ccCcceeECCCC------CCCcCCHhHhCCCCCCCEEECCC-CcCCccChhHhcccccccCEEEccC
Confidence 888888888774 45556666677888888888888 788887777776 778888888764
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.3e-45 Score=421.28 Aligned_cols=507 Identities=16% Similarity=0.096 Sum_probs=355.1
Q ss_pred CCCCceeEEEeecc----CCCCcccCCCCccEEEeecccccccCcc-ccCCceeEEEEeCCCCCccc-CccccCcccccE
Q 003435 258 NIHTDIRHCTLVGD----LSSSTIPRARKLRTLLFLTVKMENLSFP-CQEFQCLRVLDLGQSGIIKL-PDSIGTLKHLRY 331 (820)
Q Consensus 258 ~~~~~~~~l~l~~~----~~~~~~~~~~~L~~L~l~~n~~~~l~~~-~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~ 331 (820)
.++..++.+.+.++ +.+..|.++++|++|++++|.+..++.. |..+++|++|+|++|.+..+ |..|+++++|++
T Consensus 30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH 109 (606)
T ss_dssp TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccE
Confidence 34567788888877 3566788888888888888888877554 88888888888888888865 667888888888
Q ss_pred EeccCcccccc-ccccccCCcccEEeccCCCCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCC--ccCceee
Q 003435 332 LDLSHTYIRKI-PGSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLR--KLPAFIL 408 (820)
Q Consensus 332 L~Ls~n~i~~l-p~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~--~L~~~~~ 408 (820)
|+|++|.++.+ |..++++++|++|++++|.+.+..++.+..+++|++|++++|.+.+..|..++.+++|+ .|++..+
T Consensus 110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp EECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred eeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 88888888877 67788888888888888877664333455588888888888887776677788888888 5555555
Q ss_pred CCccccc---cccccccCCCCCceeecccCCCCChhhhhhhccccccccceeeEEeccCCccChh-hHHHHhhccCCCCC
Q 003435 409 GKQRFCA---GLGELKLLDLRGRLEIKNLENLKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDD-KAQALIEFLRPPHN 484 (820)
Q Consensus 409 ~~~~~~~---~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~l~~~~~ 484 (820)
....... ....|+.+++.++.. .. ..+.+...+....+........... .....+..+.. .+
T Consensus 190 ~l~~~~~~~~~~~~L~~L~l~~~~~---------~~----~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~-~~ 255 (606)
T 3t6q_A 190 DIAGIEPGAFDSAVFQSLNFGGTQN---------LL----VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE-MS 255 (606)
T ss_dssp CCCEECTTTTTTCEEEEEECTTCSC---------HH----HHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG-SE
T ss_pred ccCccChhHhhhccccccccCCchh---------HH----HHhhhccccchhheechhhccccccccChhHhchhhc-Cc
Confidence 4443321 234556665554320 10 1111111222112211111100000 00111122222 27
Q ss_pred CcEEEEecCCCCCCCcccccCCCCccEEEecccccCCCCC-CCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcce
Q 003435 485 LKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELPP-LGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKL 563 (820)
Q Consensus 485 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~ 563 (820)
|+.|++++|.+..++...+..+++|++|++++|.++.+|. ++.+++|+.|++++|.+....+ ..+..+++|++
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~ 329 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ------ISASNFPSLTH 329 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG------GCGGGCTTCSE
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch------hhhhccCcCCE
Confidence 8999999999999988877889999999999999988887 8899999999999998776532 23457788888
Q ss_pred eecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCC------CCCCCCcCceEecccC--CccccccCCC
Q 003435 564 LQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNT------LPFIRNLKNLALCNSN--DKLVCSLSRF 635 (820)
Q Consensus 564 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------~~~l~~L~~L~l~~~~--~~~~~~~~~l 635 (820)
|++.++.....+ ....+..+++|++|++++|.+... +..+++|+.|++++|. ...+..+..+
T Consensus 330 L~l~~n~~~~~~----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 399 (606)
T 3t6q_A 330 LSIKGNTKRLEL----------GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399 (606)
T ss_dssp EECCSCSSCCBC----------CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC
T ss_pred EECCCCCccccc----------chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC
Confidence 888876322111 123345788889999988877542 3347778888888877 3445567778
Q ss_pred CCcceEEccCCCCCccccc-cCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCccccc---CccccCCCCccc
Q 003435 636 PSLSSLVVDNFPELNCLSD-KTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLES---LPMSLEKFCSLQ 711 (820)
Q Consensus 636 ~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~l~~l~~L~ 711 (820)
++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+..+++|+
T Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~ 479 (606)
T 3t6q_A 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479 (606)
T ss_dssp TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCC
T ss_pred ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCcc
Confidence 8888888888877766544 377788888888888877777777777888888888888876652 234577788888
Q ss_pred EEEecCCCCCCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCchhhHHHhccccCCCcccccCCcee
Q 003435 712 KLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDPIAQMEVV 791 (820)
Q Consensus 712 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~l 791 (820)
+|++++|++.+..|..+..+++|++|++++|++.+..|..+.++++| +|++++| .+.+..+..+..+++|+.+
T Consensus 480 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N------~l~~~~~~~~~~l~~L~~L 552 (606)
T 3t6q_A 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN------HISIILPSLLPILSQQRTI 552 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS------CCCCCCGGGHHHHHTSSEE
T ss_pred EEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC------cccccCHhhcccCCCCCEE
Confidence 88888888777777778888888888888888888777888888888 8877774 3444555566777788888
Q ss_pred EecCceeeecc
Q 003435 792 SMTTLNLMADE 802 (820)
Q Consensus 792 ~l~~~n~~~~~ 802 (820)
++++ |.+++.
T Consensus 553 ~l~~-N~~~c~ 562 (606)
T 3t6q_A 553 NLRQ-NPLDCT 562 (606)
T ss_dssp ECTT-CCEECS
T ss_pred eCCC-CCcccc
Confidence 8888 656553
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.1e-43 Score=405.00 Aligned_cols=501 Identities=17% Similarity=0.128 Sum_probs=274.2
Q ss_pred CCCceeEEEeecc----CCCCcccCCCCccEEEeecccccccCcc-ccCCceeEEEEeCCCCCccc-CccccCcccccEE
Q 003435 259 IHTDIRHCTLVGD----LSSSTIPRARKLRTLLFLTVKMENLSFP-CQEFQCLRVLDLGQSGIIKL-PDSIGTLKHLRYL 332 (820)
Q Consensus 259 ~~~~~~~l~l~~~----~~~~~~~~~~~L~~L~l~~n~~~~l~~~-~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L 332 (820)
++..++.+.+.++ +++..|.++++|++|++++|.+..++.. |.++++|++|+|++|.++.+ |..|+++++|++|
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence 4456777777766 3555677777777777777777777554 77777777777777777766 6667777777777
Q ss_pred eccCccccccc-cccccCCcccEEeccCCCCcc-ccchhccCCCCCcEEecCCCCCccccCcccCCCCCCC----ccCce
Q 003435 333 DLSHTYIRKIP-GSISKLKHLQTLDLSNCYNLE-ELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLR----KLPAF 406 (820)
Q Consensus 333 ~Ls~n~i~~lp-~~~~~L~~L~~L~L~~n~~~~-~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~----~L~~~ 406 (820)
+|++|.++.+| ..|+++++|++|++++|.+.+ .+|..++++++|++|++++|.+.+..|..++.+++|+ .|++.
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 77777777664 667777777777777776654 5677777777777777777776666666666666554 35544
Q ss_pred eeCCccccc---cccccccCCCCCceeecccCCCCChhhhhhhccccccccceeeEEeccCCccChh--hHHHHhhccCC
Q 003435 407 ILGKQRFCA---GLGELKLLDLRGRLEIKNLENLKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDD--KAQALIEFLRP 481 (820)
Q Consensus 407 ~~~~~~~~~---~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~l~~ 481 (820)
.+.+..... ...+|+.++++++. .........+.++..++.+++..........- .....+..+..
T Consensus 190 ~n~l~~~~~~~~~~~~L~~L~L~~n~---------~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~ 260 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGIKLHELTLRGNF---------NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCC---------SCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGG
T ss_pred CCCcceeCcccccCceeeeeeccCCc---------cchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhh
Confidence 444333221 11244444444321 00122223344445555555443322110000 00000001111
Q ss_pred CCCCcEEEE-ecCCCCCCCcccccCCCCccEEEecccccCCCCCCCCCCCCcceeeccCcCceEeCccccCCCcccCCCC
Q 003435 482 PHNLKVLDL-KGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELPPLGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPS 560 (820)
Q Consensus 482 ~~~L~~L~L-~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~ 560 (820)
+ .++.+++ ..+.+...... +..+++|+.|++++|.+..+|.+..+++|+.|++++|.+..+. .+ .+++
T Consensus 261 l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp--------~~-~l~~ 329 (606)
T 3vq2_A 261 V-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP--------TL-DLPF 329 (606)
T ss_dssp S-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCC--------CC-CCSS
T ss_pred c-cHhheeccccccccccccc-cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccc--------cC-CCCc
Confidence 1 2223333 22222222111 2345555555555555555555555555555555555542221 11 4455
Q ss_pred cceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCC--CC----CCCCcCceEecccC-CccccccC
Q 003435 561 LKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNT--LP----FIRNLKNLALCNSN-DKLVCSLS 633 (820)
Q Consensus 561 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~----~l~~L~~L~l~~~~-~~~~~~~~ 633 (820)
|++|++.++..+... .+..+++|++|++++|.+... ++ .+++|+.|++++|. ...+..+.
T Consensus 330 L~~L~l~~n~~~~~~-------------~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 396 (606)
T 3vq2_A 330 LKSLTLTMNKGSISF-------------KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFM 396 (606)
T ss_dssp CCEEEEESCSSCEEC-------------CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCT
T ss_pred cceeeccCCcCccch-------------hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhcc
Confidence 555555554322211 122455566666665554322 11 24556666666555 22334555
Q ss_pred CCCCcceEEccCCCCCcccc-ccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccc-cCccccCCCCccc
Q 003435 634 RFPSLSSLVVDNFPELNCLS-DKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLE-SLPMSLEKFCSLQ 711 (820)
Q Consensus 634 ~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~ 711 (820)
.+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+ .+|..+..+++|+
T Consensus 397 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 476 (606)
T 3vq2_A 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476 (606)
T ss_dssp TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCC
Confidence 56666666666666555554 455666666666666666655555556666666666666666554 2455566666666
Q ss_pred EEEecCCCCCCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCchhhHHHhccccCCCccccc-CCce
Q 003435 712 KLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDPIA-QMEV 790 (820)
Q Consensus 712 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~-~L~~ 790 (820)
+|++++|++.+..|..+.++++|++|++++|++.+..|..+.++++|++|++++|. +.. .+..+..++ +|+.
T Consensus 477 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~------l~~-~p~~~~~l~~~L~~ 549 (606)
T 3vq2_A 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR------IET-SKGILQHFPKSLAF 549 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC------CCC-EESCGGGSCTTCCE
T ss_pred EEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc------Ccc-cCHhHhhhcccCcE
Confidence 66666666665555566666666666666666666556666666666666666542 222 233355554 3666
Q ss_pred eEecCceeee
Q 003435 791 VSMTTLNLMA 800 (820)
Q Consensus 791 l~l~~~n~~~ 800 (820)
+++++ |.+.
T Consensus 550 l~l~~-N~~~ 558 (606)
T 3vq2_A 550 FNLTN-NSVA 558 (606)
T ss_dssp EECCS-CCCC
T ss_pred EEccC-CCcc
Confidence 66666 4444
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.2e-42 Score=391.81 Aligned_cols=470 Identities=14% Similarity=0.099 Sum_probs=332.7
Q ss_pred EEeecccccccCccccCCceeEEEEeCCCCCccc-CccccCcccccEEeccCcccccc-ccccccCCcccEEeccCCCCc
Q 003435 286 LLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKL-PDSIGTLKHLRYLDLSHTYIRKI-PGSISKLKHLQTLDLSNCYNL 363 (820)
Q Consensus 286 L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~l-p~~~~~L~~L~~L~L~~n~~~ 363 (820)
++.++..+..+|..+.. .+++|+|++|.++.+ |..|+++++|++|+|++|.++.+ |..|+++++|++|+|++|.+.
T Consensus 17 ~~c~~~~l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 94 (606)
T 3t6q_A 17 YNCENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94 (606)
T ss_dssp EECTTSCCSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS
T ss_pred EECCCCCcccCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccc
Confidence 34444444555444322 355555555555544 34455555555555555555544 445555555555555555555
Q ss_pred cccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCCCCChhhh
Q 003435 364 EELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLKNVVDA 443 (820)
Q Consensus 364 ~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~ 443 (820)
+..|..|+++++|++|++++|.+.+..|..++++++|++|++..+.+....
T Consensus 95 ~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~----------------------------- 145 (606)
T 3t6q_A 95 FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK----------------------------- 145 (606)
T ss_dssp EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCC-----------------------------
T ss_pred ccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccC-----------------------------
Confidence 444555555555555555555544433444555555555544333222110
Q ss_pred hhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCc--EEEEecCCCCCCCcccccCC---------------
Q 003435 444 EEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLK--VLDLKGYRGSVFPSWLNSGV--------------- 506 (820)
Q Consensus 444 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~--~L~L~~n~~~~~~~~~~~~l--------------- 506 (820)
...+.++.+|+.|++++|....... ..+..+++|+ .|++++|.+..+++..+...
T Consensus 146 -~~~~~~l~~L~~L~L~~n~l~~~~~-------~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~ 217 (606)
T 3t6q_A 146 -LPKGFPTEKLKVLDFQNNAIHYLSK-------EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLV 217 (606)
T ss_dssp -CCTTCCCTTCCEEECCSSCCCEECH-------HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHH
T ss_pred -cccccCCcccCEEEcccCcccccCh-------hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHH
Confidence 0001113344444444444332222 2234456777 89999998877665443211
Q ss_pred ------------------------------------CCccEEEecccccCCCCC--CCCCCCCcceeeccCcCceEeCcc
Q 003435 507 ------------------------------------PNLVKVSLVDCTCQELPP--LGQLPNLKDLYVKGMSAVQIIGYK 548 (820)
Q Consensus 507 ------------------------------------~~L~~L~L~~n~~~~l~~--l~~l~~L~~L~L~~n~~~~~~~~~ 548 (820)
.+|+.|++++|.++.+++ ++.+++|+.|++++|.+..+.
T Consensus 218 ~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp--- 294 (606)
T 3t6q_A 218 IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP--- 294 (606)
T ss_dssp HHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCC---
T ss_pred HhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCC---
Confidence 167888888888888877 889999999999999887542
Q ss_pred ccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCC-----CCCCcCceEecc
Q 003435 549 FYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLP-----FIRNLKNLALCN 623 (820)
Q Consensus 549 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-----~l~~L~~L~l~~ 623 (820)
..+..+++|++|++.++. +.. ..+..+..+++|++|++++|.+...+| .+++|+.|++++
T Consensus 295 ----~~l~~l~~L~~L~l~~n~-l~~----------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 359 (606)
T 3t6q_A 295 ----SGLVGLSTLKKLVLSANK-FEN----------LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359 (606)
T ss_dssp ----SSCCSCTTCCEEECTTCC-CSB----------GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCS
T ss_pred ----hhhcccccCCEEECccCC-cCc----------CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCC
Confidence 234678899999998763 221 223344578999999999998775443 478999999999
Q ss_pred cCCcc----ccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhh-hcCCCCCcceEeeccCcccc
Q 003435 624 SNDKL----VCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFV-FMQSFSSLRHLSILHCDKLE 698 (820)
Q Consensus 624 ~~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~ 698 (820)
|.... +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+
T Consensus 360 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 439 (606)
T 3t6q_A 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439 (606)
T ss_dssp SCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBT
T ss_pred CccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCC
Confidence 98332 45788999999999999999998899999999999999999988876654 58899999999999999888
Q ss_pred cCccccCCCCcccEEEecCCCCCCc---cccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCchhhHHHhc
Q 003435 699 SLPMSLEKFCSLQKLDIVECPRLVH---IPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCPQLERQRLM 775 (820)
Q Consensus 699 ~~~~~l~~l~~L~~L~L~~n~~~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~ 775 (820)
..|..+..+++|++|++++|++.+. .+..+..+++|++|++++|.+.+..|..+..+++|++|++++| .+.
T Consensus 440 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N------~l~ 513 (606)
T 3t6q_A 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN------RLT 513 (606)
T ss_dssp TCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS------CCC
T ss_pred cCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC------ccC
Confidence 8898999999999999999998763 2356888999999999999999998999999999999999986 345
Q ss_pred cccCCCcccccCCceeEecCceeeeccCCCcccccchhhhhhcCC
Q 003435 776 NALHESFDPIAQMEVVSMTTLNLMADEVPTETDAGASLREKNKHG 820 (820)
Q Consensus 776 ~~~~~~~~~l~~L~~l~l~~~n~~~~~~~~~~~~~~~L~~L~L~~ 820 (820)
+..+..+..+..| .|++++ |.+++.+|..+..+++|++|++++
T Consensus 514 ~~~~~~l~~l~~L-~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~ 556 (606)
T 3t6q_A 514 SSSIEALSHLKGI-YLNLAS-NHISIILPSLLPILSQQRTINLRQ 556 (606)
T ss_dssp GGGGGGGTTCCSC-EEECCS-SCCCCCCGGGHHHHHTSSEEECTT
T ss_pred cCChhHhCccccc-EEECcC-CcccccCHhhcccCCCCCEEeCCC
Confidence 5667888899999 999999 889999999999999999999975
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.5e-42 Score=397.85 Aligned_cols=450 Identities=17% Similarity=0.129 Sum_probs=325.6
Q ss_pred CCccEEEeecccccccCcc-ccCCceeEEEEeCCCCCccc-CccccCcccccEEeccCcccccc-ccccccCCcccEEec
Q 003435 281 RKLRTLLFLTVKMENLSFP-CQEFQCLRVLDLGQSGIIKL-PDSIGTLKHLRYLDLSHTYIRKI-PGSISKLKHLQTLDL 357 (820)
Q Consensus 281 ~~L~~L~l~~n~~~~l~~~-~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~l-p~~~~~L~~L~~L~L 357 (820)
+++++|++++|.+..++.. |.++++|++|+|++|.++.+ |..|+++++|++|+|++|.++.+ |..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 6777778888877777764 77777888888888777766 45677778888888888877766 677777888888888
Q ss_pred cCCCCccccchhccCCCCCcEEecCCCCCcc-ccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCC
Q 003435 358 SNCYNLEELPKGICQLTNLRTLDISSCYSLT-HMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLEN 436 (820)
Q Consensus 358 ~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~ 436 (820)
++|.+.+..|..++++++|++|++++|.+.+ .+|..++++++|++|++..+.+....
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~---------------------- 169 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT---------------------- 169 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC----------------------
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC----------------------
Confidence 8777666665667778888888888777654 46777777777777765544332111
Q ss_pred CCChhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCC-CCcEEEEecCCCCCCCcccccCCCCccEEEec
Q 003435 437 LKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPH-NLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLV 515 (820)
Q Consensus 437 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 515 (820)
...+... ..++ .+.+|++++|.+..++...+... +|+.|+++
T Consensus 170 --------------------------------~~~~~~l----~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~ 212 (606)
T 3vq2_A 170 --------------------------------VNDLQFL----RENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLR 212 (606)
T ss_dssp --------------------------------TTTTHHH----HHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEE
T ss_pred --------------------------------hhhhhhh----hccccccceeeccCCCcceeCcccccCc-eeeeeecc
Confidence 1111111 1111 36689999999999998887544 89999999
Q ss_pred ccccCC-----------------------------------------------------------CCCCCCCCCCcceee
Q 003435 516 DCTCQE-----------------------------------------------------------LPPLGQLPNLKDLYV 536 (820)
Q Consensus 516 ~n~~~~-----------------------------------------------------------l~~l~~l~~L~~L~L 536 (820)
+|.+.. +|.+..+++|+.|++
T Consensus 213 ~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l 292 (606)
T 3vq2_A 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL 292 (606)
T ss_dssp SCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEE
T ss_pred CCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEe
Confidence 985531 111344556666666
Q ss_pred ccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCC--CCC
Q 003435 537 KGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLP--FIR 614 (820)
Q Consensus 537 ~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~ 614 (820)
++|.+..+. .+..+++|++|++.++.- . .++.. .+++|++|++++|.....++ .++
T Consensus 293 ~~~~~~~l~--------~l~~~~~L~~L~l~~n~l-~-----------~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~ 350 (606)
T 3vq2_A 293 AGVSIKYLE--------DVPKHFKWQSLSIIRCQL-K-----------QFPTL--DLPFLKSLTLTMNKGSISFKKVALP 350 (606)
T ss_dssp ESCCCCCCC--------CCCTTCCCSEEEEESCCC-S-----------SCCCC--CCSSCCEEEEESCSSCEECCCCCCT
T ss_pred cCccchhhh--------hccccccCCEEEcccccC-c-----------ccccC--CCCccceeeccCCcCccchhhccCC
Confidence 666554321 234555666666665522 1 23322 67788888888886555333 377
Q ss_pred CcCceEecccCCc----cccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchh-hhcCCCCCcceE
Q 003435 615 NLKNLALCNSNDK----LVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLF-VFMQSFSSLRHL 689 (820)
Q Consensus 615 ~L~~L~l~~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L 689 (820)
+|+.|++++|... .+..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+..+ ..+..+++|++|
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence 8888888888722 24566778888888888888655 45778888999999999988777766 578888999999
Q ss_pred eeccCcccccCccccCCCCcccEEEecCCCCCC-ccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCch
Q 003435 690 SILHCDKLESLPMSLEKFCSLQKLDIVECPRLV-HIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCPQ 768 (820)
Q Consensus 690 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~ 768 (820)
++++|.+.+..|..+.++++|++|++++|++.+ .+|..+..+++|++|++++|.+.+..|..+.++++|++|++++|.
T Consensus 430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~- 508 (606)
T 3vq2_A 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN- 508 (606)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-
T ss_pred ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc-
Confidence 999998888888888889999999999998877 467888889999999999999888888888899999999888853
Q ss_pred hhHHHhccccCCCcccccCCceeEecCceeeeccCCCcccccc-hhhhhhcCC
Q 003435 769 LERQRLMNALHESFDPIAQMEVVSMTTLNLMADEVPTETDAGA-SLREKNKHG 820 (820)
Q Consensus 769 L~~~~~~~~~~~~~~~l~~L~~l~l~~~n~~~~~~~~~~~~~~-~L~~L~L~~ 820 (820)
+.+..+..+..+++|+.|++++ |.++ .+|..+..++ +|++|++++
T Consensus 509 -----l~~~~~~~~~~l~~L~~L~l~~-N~l~-~~p~~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 509 -----LLFLDSSHYNQLYSLSTLDCSF-NRIE-TSKGILQHFPKSLAFFNLTN 554 (606)
T ss_dssp -----CSCEEGGGTTTCTTCCEEECTT-SCCC-CEESCGGGSCTTCCEEECCS
T ss_pred -----CCCcCHHHccCCCcCCEEECCC-CcCc-ccCHhHhhhcccCcEEEccC
Confidence 4455677788888999999999 6777 4566688886 599888864
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-39 Score=385.47 Aligned_cols=475 Identities=20% Similarity=0.179 Sum_probs=293.9
Q ss_pred CCCceeEEEeecc----CCCCcccCCCCccEEEeecc-cccccCc-cccCCceeEEEEeCCCCCccc-CccccCcccccE
Q 003435 259 IHTDIRHCTLVGD----LSSSTIPRARKLRTLLFLTV-KMENLSF-PCQEFQCLRVLDLGQSGIIKL-PDSIGTLKHLRY 331 (820)
Q Consensus 259 ~~~~~~~l~l~~~----~~~~~~~~~~~L~~L~l~~n-~~~~l~~-~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~ 331 (820)
.+..++.+.++++ +.+..|.++++|++|++++| .+..++. .|.++++|++|+|++|.+..+ |..|+++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 5677888998887 35678899999999999998 4556644 489999999999999999876 788999999999
Q ss_pred EeccCccccc-cccc--cccCCcccEEeccCCCCccccc-hhccCCCCCcEEecCCCCCccccCcccCCC--CCCCccCc
Q 003435 332 LDLSHTYIRK-IPGS--ISKLKHLQTLDLSNCYNLEELP-KGICQLTNLRTLDISSCYSLTHMPLGIGKL--RPLRKLPA 405 (820)
Q Consensus 332 L~Ls~n~i~~-lp~~--~~~L~~L~~L~L~~n~~~~~lp-~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l--~~L~~L~~ 405 (820)
|+|++|.++. +|.. |+++++|++|+|++|.+.+..+ ..|+++++|++|++++|.+.+..|..+..+ ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 9999999885 5544 8899999999999988776654 568999999999999998888888888777 78888887
Q ss_pred eeeCCcccc----cccc------ccccCCCCCceeecccC--------------------------CCCChhhhhhhccc
Q 003435 406 FILGKQRFC----AGLG------ELKLLDLRGRLEIKNLE--------------------------NLKNVVDAEEAKLH 449 (820)
Q Consensus 406 ~~~~~~~~~----~~l~------~L~~L~l~~~~~~~~l~--------------------------~~~~~~~~~~~~l~ 449 (820)
..+...... ..+. .|+.|+++++....... ....+.......+.
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 766554321 1112 26677766542100000 00001111112222
Q ss_pred cc--cccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEecccccCCCCC--C
Q 003435 450 DK--VHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELPP--L 525 (820)
Q Consensus 450 ~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~--l 525 (820)
++ ..++.|++++|...... +..+..+++|+.|++++|.+..+++..+..+++|++|++++|.++.+++ +
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~-------~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 334 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLN-------SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF 334 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEEC-------SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC
T ss_pred ccccCCccEEECCCCcccccC-------hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh
Confidence 21 34555555544432211 1234445555555555555555544444455555556665555555432 5
Q ss_pred CCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCC
Q 003435 526 GQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCS 605 (820)
Q Consensus 526 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 605 (820)
+.+++|+.|++++|.+..+.. ..+..+++|+.|+++++. +.. +..+++|+.|++++|.
T Consensus 335 ~~l~~L~~L~L~~N~i~~~~~------~~~~~l~~L~~L~Ls~N~-l~~---------------i~~~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 335 YGLPKVAYIDLQKNHIAIIQD------QTFKFLEKLQTLDLRDNA-LTT---------------IHFIPSIPDIFLSGNK 392 (844)
T ss_dssp SSCTTCCEEECCSCCCCCCCS------SCSCSCCCCCEEEEETCC-SCC---------------CSSCCSCSEEEEESCC
T ss_pred cCCCCCCEEECCCCCCCccCh------hhhcCCCCCCEEECCCCC-CCc---------------ccCCCCcchhccCCCC
Confidence 555555555555555443321 122345555555555431 111 1134556666666655
Q ss_pred CCCCCCCCCCcCceEecccCCccc---cccCCCCCcceEEccCCCCCccccc-cCCCCCCccEEEEccCCCcc-----ch
Q 003435 606 MLNTLPFIRNLKNLALCNSNDKLV---CSLSRFPSLSSLVVDNFPELNCLSD-KTGNLNSLVKLTVNECDNLE-----SL 676 (820)
Q Consensus 606 ~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~~~~-----~~ 676 (820)
+........+++.|++++|..... ..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+.. ..
T Consensus 393 l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~ 472 (844)
T 3j0a_A 393 LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472 (844)
T ss_dssp CCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCC
T ss_pred cccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccc
Confidence 543222244566666666552221 1234667777777777776654332 34556777777777776542 22
Q ss_pred hhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCcccccccccCCC
Q 003435 677 FVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLG 756 (820)
Q Consensus 677 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 756 (820)
+..+.++++|++|++++|.+.+..|..+.++++|++|+|++|++.+..|..+. ++|+.|++++|++.+..|..+ .
T Consensus 473 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~ 547 (844)
T 3j0a_A 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---V 547 (844)
T ss_dssp SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---S
T ss_pred hhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---C
Confidence 33566677777777777776666666677777777777777766665555443 677777777777777666554 3
Q ss_pred CcceEEEeCCc
Q 003435 757 QLQRLVIKKCP 767 (820)
Q Consensus 757 ~L~~L~l~~~~ 767 (820)
+|+.|++++||
T Consensus 548 ~L~~l~l~~Np 558 (844)
T 3j0a_A 548 SLSVLDITHNK 558 (844)
T ss_dssp SCCEEEEEEEC
T ss_pred CcCEEEecCCC
Confidence 56777776654
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-40 Score=377.16 Aligned_cols=475 Identities=18% Similarity=0.123 Sum_probs=249.3
Q ss_pred CCCceeEEEeecc----CCCCcccCCCCccEEEeecccccccCcc-ccCCceeEEEEeCCCCCcccC-ccccCcccccEE
Q 003435 259 IHTDIRHCTLVGD----LSSSTIPRARKLRTLLFLTVKMENLSFP-CQEFQCLRVLDLGQSGIIKLP-DSIGTLKHLRYL 332 (820)
Q Consensus 259 ~~~~~~~l~l~~~----~~~~~~~~~~~L~~L~l~~n~~~~l~~~-~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L 332 (820)
++..++.+.+.++ ++..+|.++++|++|++++|.+..++.. |..+++|++|+|++|.++.+| ..|+++++|++|
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 4456777777776 3555677788888888888877777655 777888888888888877664 567788888888
Q ss_pred eccCcccccccc-ccccCCcccEEeccCCCCcc-ccchhccCCCCCcEEecCCCCCccccCcccCCCCCC----CccCce
Q 003435 333 DLSHTYIRKIPG-SISKLKHLQTLDLSNCYNLE-ELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPL----RKLPAF 406 (820)
Q Consensus 333 ~Ls~n~i~~lp~-~~~~L~~L~~L~L~~n~~~~-~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L----~~L~~~ 406 (820)
++++|.++.+|. .|+++++|++|++++|.+.+ .+|..|+++++|++|++++|.+.+..|..++.+++| ..+++.
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 888888777753 67788888888888876665 467778888888888888887666666667666666 444444
Q ss_pred eeCCccccc---cccccccCCCCCceeecccCCCCChhhhhhhccccccccceeeEEeccCCccCh--hhHHHHhhccCC
Q 003435 407 ILGKQRFCA---GLGELKLLDLRGRLEIKNLENLKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRD--DKAQALIEFLRP 481 (820)
Q Consensus 407 ~~~~~~~~~---~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~l~~ 481 (820)
.+....... ....|+.+++.++.. ........+.++..++...+.......... ......+..+..
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~l~~n~~---------~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~ 256 (570)
T 2z63_A 186 LNPMNFIQPGAFKEIRLHKLTLRNNFD---------SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256 (570)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCS---------CTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGG
T ss_pred CCCceecCHHHhccCcceeEecccccc---------cccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccc
Confidence 333322211 011233333332110 000111122222333332222211100000 000000001111
Q ss_pred CCCCcEEEEecC-CCCCCCcccccCCCCccEEEecccccCCCCC-CCCCCCCcceeeccCcCceEeCccccCCCcccCCC
Q 003435 482 PHNLKVLDLKGY-RGSVFPSWLNSGVPNLVKVSLVDCTCQELPP-LGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFP 559 (820)
Q Consensus 482 ~~~L~~L~L~~n-~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~ 559 (820)
+ .++.++++++ .+.......+..+++|+.|++++|.++.+|. +..+ +|+.|++++|.+..+.. ..++
T Consensus 257 l-~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~---------~~l~ 325 (570)
T 2z63_A 257 L-TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT---------LKLK 325 (570)
T ss_dssp S-EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB---------CBCS
T ss_pred c-chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCc---------cccc
Confidence 1 2444555544 2222222223456666777776666666665 5555 66666666665542211 2455
Q ss_pred CcceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCC------CCCCCCcCceEecccC-Ccccccc
Q 003435 560 SLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNT------LPFIRNLKNLALCNSN-DKLVCSL 632 (820)
Q Consensus 560 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------~~~l~~L~~L~l~~~~-~~~~~~~ 632 (820)
+|+.|++.++..... .+. ..+++|++|++++|.+... +..+++|+.|++++|. ...+..+
T Consensus 326 ~L~~L~l~~n~~~~~-----------~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 392 (570)
T 2z63_A 326 SLKRLTFTSNKGGNA-----------FSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 392 (570)
T ss_dssp SCCEEEEESCBSCCB-----------CCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEE
T ss_pred ccCEEeCcCCccccc-----------ccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccc
Confidence 555555555421110 010 2455666666666554322 1124455555555554 2222224
Q ss_pred CCCCCcceEEccCCCCCcccc-ccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCccc-ccCccccCCCCcc
Q 003435 633 SRFPSLSSLVVDNFPELNCLS-DKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKL-ESLPMSLEKFCSL 710 (820)
Q Consensus 633 ~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L 710 (820)
..+++|++|++++|.+.+..+ ..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++|
T Consensus 393 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L 472 (570)
T 2z63_A 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472 (570)
T ss_dssp ETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred cccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC
Confidence 455555555555555444333 23445555555555555554444445555555555555555543 3444455555555
Q ss_pred cEEEecCCCCCCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCC
Q 003435 711 QKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKC 766 (820)
Q Consensus 711 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 766 (820)
++|++++|++.+..|..+..+++|++|++++|++.+..+..+..+++|++|++++|
T Consensus 473 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence 55555555555444555555555555555555555544444555555555555543
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-39 Score=385.66 Aligned_cols=486 Identities=17% Similarity=0.123 Sum_probs=353.7
Q ss_pred CCCCccEEEeecccccccCcc-ccCCceeEEEEeCCCCC-ccc-CccccCcccccEEeccCcccccc-ccccccCCcccE
Q 003435 279 RARKLRTLLFLTVKMENLSFP-CQEFQCLRVLDLGQSGI-IKL-PDSIGTLKHLRYLDLSHTYIRKI-PGSISKLKHLQT 354 (820)
Q Consensus 279 ~~~~L~~L~l~~n~~~~l~~~-~~~l~~L~~L~L~~n~l-~~l-p~~~~~l~~L~~L~Ls~n~i~~l-p~~~~~L~~L~~ 354 (820)
..++++.|++++|.+..++.. |..+++|++|+|++|.. ..+ |..|+++++|++|+|++|.++.+ |..|+++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 457999999999999998665 99999999999999954 466 68899999999999999999977 889999999999
Q ss_pred EeccCCCCccccchh--ccCCCCCcEEecCCCCCccccC-cccCCCCCCCccCceeeCCcccc----ccc--cccccCCC
Q 003435 355 LDLSNCYNLEELPKG--ICQLTNLRTLDISSCYSLTHMP-LGIGKLRPLRKLPAFILGKQRFC----AGL--GELKLLDL 425 (820)
Q Consensus 355 L~L~~n~~~~~lp~~--~~~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~~~~~~~~~~~----~~l--~~L~~L~l 425 (820)
|+|++|.+.+.+|.. ++++++|++|++++|.+.+..| ..|+++++|++|++..+.+.... ..+ ++|+.+++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 999999988877765 9999999999999999777655 57999999999999887765432 122 56777776
Q ss_pred CCceeecccC-CCCChhhhhhhccccccccceeeEEeccCCccChhhHH-----------------------------HH
Q 003435 426 RGRLEIKNLE-NLKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQ-----------------------------AL 475 (820)
Q Consensus 426 ~~~~~~~~l~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----------------------------~~ 475 (820)
+++....... .+.... ..+ ....|+.|++++|.........+. ..
T Consensus 182 ~~n~l~~~~~~~~~~~~----~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~ 256 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCM----NPF-RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256 (844)
T ss_dssp CCSBSCCCCCCCCCSSS----CTT-TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGG
T ss_pred CCCccccccccchhhcC----Ccc-ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCC
Confidence 6542111100 000000 001 112366777766643211110000 00
Q ss_pred hhccCC--CCCCcEEEEecCCCCCCCcccccCCCCccEEEecccccCCCCC--CCCCCCCcceeeccCcCceEeCccccC
Q 003435 476 IEFLRP--PHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELPP--LGQLPNLKDLYVKGMSAVQIIGYKFYG 551 (820)
Q Consensus 476 ~~~l~~--~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~--l~~l~~L~~L~L~~n~~~~~~~~~~~~ 551 (820)
...+.. .++|+.|++++|.+..++...+..+++|+.|++++|.++.+++ ++.+++|+.|++++|.+....+
T Consensus 257 ~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----- 331 (844)
T 3j0a_A 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS----- 331 (844)
T ss_dssp GTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS-----
T ss_pred hhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH-----
Confidence 112222 3678899999888887777777788899999999998877654 8888899999999888765543
Q ss_pred CCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCCCCCcCceEecccCCccccc
Q 003435 552 NDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPFIRNLKNLALCNSNDKLVCS 631 (820)
Q Consensus 552 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 631 (820)
..+..+++|+.|++.++ .+.. ..+..+..+++|++|++++|.+. .++.+++|+.|++++|.......
T Consensus 332 -~~~~~l~~L~~L~L~~N-~i~~----------~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~L~~L~l~~N~l~~l~~ 398 (844)
T 3j0a_A 332 -SNFYGLPKVAYIDLQKN-HIAI----------IQDQTFKFLEKLQTLDLRDNALT-TIHFIPSIPDIFLSGNKLVTLPK 398 (844)
T ss_dssp -CSCSSCTTCCEEECCSC-CCCC----------CCSSCSCSCCCCCEEEEETCCSC-CCSSCCSCSEEEEESCCCCCCCC
T ss_pred -HHhcCCCCCCEEECCCC-CCCc----------cChhhhcCCCCCCEEECCCCCCC-cccCCCCcchhccCCCCcccccc
Confidence 33457788888888775 2222 22334557888999999988654 46668888889988887433222
Q ss_pred cCCCCCcceEEccCCCCCccc-cccCCCCCCccEEEEccCCCccchhh-hcCCCCCcceEeeccCccc-----ccCcccc
Q 003435 632 LSRFPSLSSLVVDNFPELNCL-SDKTGNLNSLVKLTVNECDNLESLFV-FMQSFSSLRHLSILHCDKL-----ESLPMSL 704 (820)
Q Consensus 632 ~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~-----~~~~~~l 704 (820)
...+++.|++++|.+.+.. +..+..+++|+.|++++|++.+..+. .+..+++|++|++++|.+. +..+..+
T Consensus 399 --~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 476 (844)
T 3j0a_A 399 --INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476 (844)
T ss_dssp --CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCS
T ss_pred --cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhh
Confidence 2567888999988877642 23356788899999999887654332 4566788999999998875 3344567
Q ss_pred CCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCchhhHHHhccccCCCccc
Q 003435 705 EKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDP 784 (820)
Q Consensus 705 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~ 784 (820)
.++++|++|+|++|.+.+..|..|.++++|++|++++|++.+..+..+. ++|+.|++++| .+.+..+..+
T Consensus 477 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N------~l~~~~~~~~-- 546 (844)
T 3j0a_A 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN------QLLAPNPDVF-- 546 (844)
T ss_dssp SCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEE------CCCCCCSCCC--
T ss_pred cCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCC------cCCCCChhHh--
Confidence 8888999999999988888888888899999999999988887666665 78999988874 4455555443
Q ss_pred ccCCceeEecCceeeec
Q 003435 785 IAQMEVVSMTTLNLMAD 801 (820)
Q Consensus 785 l~~L~~l~l~~~n~~~~ 801 (820)
..|+.+++++ |.+..
T Consensus 547 -~~L~~l~l~~-Np~~C 561 (844)
T 3j0a_A 547 -VSLSVLDITH-NKFIC 561 (844)
T ss_dssp -SSCCEEEEEE-ECCCC
T ss_pred -CCcCEEEecC-CCccc
Confidence 4788888888 55544
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.5e-40 Score=374.26 Aligned_cols=449 Identities=19% Similarity=0.173 Sum_probs=275.4
Q ss_pred CCccEEEeecccccccCcc-ccCCceeEEEEeCCCCCcccC-ccccCcccccEEeccCccccccc-cccccCCcccEEec
Q 003435 281 RKLRTLLFLTVKMENLSFP-CQEFQCLRVLDLGQSGIIKLP-DSIGTLKHLRYLDLSHTYIRKIP-GSISKLKHLQTLDL 357 (820)
Q Consensus 281 ~~L~~L~l~~n~~~~l~~~-~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp-~~~~~L~~L~~L~L 357 (820)
++++.|++++|.+..++.. |..+++|++|+|++|.+..++ ..|+++++|++|+|++|.++.+| ..|+++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 5788999999999888765 888999999999999988774 56889999999999999998774 78899999999999
Q ss_pred cCCCCccccchhccCCCCCcEEecCCCCCcc-ccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCC
Q 003435 358 SNCYNLEELPKGICQLTNLRTLDISSCYSLT-HMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLEN 436 (820)
Q Consensus 358 ~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~ 436 (820)
++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|++|++..+.+....
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~---------------------- 165 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY---------------------- 165 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC----------------------
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec----------------------
Confidence 9977665554468899999999999988665 46888888888887766544332111
Q ss_pred CCChhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCC----cEEEEecCCCCCCCcccccCCCCccEE
Q 003435 437 LKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNL----KVLDLKGYRGSVFPSWLNSGVPNLVKV 512 (820)
Q Consensus 437 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L----~~L~L~~n~~~~~~~~~~~~l~~L~~L 512 (820)
. ..+..+++| +.|++++|.+..+++..+... +|+.|
T Consensus 166 --------------------------------~-------~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L 205 (570)
T 2z63_A 166 --------------------------------C-------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKL 205 (570)
T ss_dssp --------------------------------G-------GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEE
T ss_pred --------------------------------H-------HHccchhccchhhhhcccCCCCceecCHHHhccC-cceeE
Confidence 0 001111233 789999999988887776444 79999
Q ss_pred EecccccC--CCCC-CCCCCCCc--------------------------------ceeeccC-cCceEeCccccCCCccc
Q 003435 513 SLVDCTCQ--ELPP-LGQLPNLK--------------------------------DLYVKGM-SAVQIIGYKFYGNDAIR 556 (820)
Q Consensus 513 ~L~~n~~~--~l~~-l~~l~~L~--------------------------------~L~L~~n-~~~~~~~~~~~~~~~~~ 556 (820)
++++|... .++. +..+++++ .++++++ .+.. ..+..+.
T Consensus 206 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~------~~~~~~~ 279 (570)
T 2z63_A 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD------DIIDLFN 279 (570)
T ss_dssp EEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEES------CSTTTTG
T ss_pred ecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhh------hchhhhc
Confidence 99887211 1111 11122221 2222222 0000 0012233
Q ss_pred CCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCC--CCCcCceEecccCCccccccCC
Q 003435 557 GFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPF--IRNLKNLALCNSNDKLVCSLSR 634 (820)
Q Consensus 557 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--l~~L~~L~l~~~~~~~~~~~~~ 634 (820)
.+++|+.|++.++. +. .++..+..+ +|++|++++|.+. .+|. +++|+.|++.+|..........
T Consensus 280 ~l~~L~~L~l~~~~-l~-----------~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (570)
T 2z63_A 280 CLTNVSSFSLVSVT-IE-----------RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVD 345 (570)
T ss_dssp GGTTCSEEEEESCE-EC-----------SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCB
T ss_pred CcCcccEEEecCcc-ch-----------hhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCcccccccccc
Confidence 45555555555431 11 122222234 5666666666554 3332 5566666666665333333355
Q ss_pred CCCcceEEccCCCCCccc--cccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCc-cccCCCCccc
Q 003435 635 FPSLSSLVVDNFPELNCL--SDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLP-MSLEKFCSLQ 711 (820)
Q Consensus 635 l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~ 711 (820)
+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..| ..+..+++|+
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 424 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence 666666666666655432 4445556666666666665444333 25566666666666666554443 3455666666
Q ss_pred EEEecCCCCCCccccccCCCCCccEEEeccCCCc-ccccccccCCCCcceEEEeCCchhhHHHhccccCCCcccccCCce
Q 003435 712 KLDIVECPRLVHIPDIMGQHSSLLELSIEGCPML-KLSLKSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDPIAQMEV 790 (820)
Q Consensus 712 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~ 790 (820)
+|++++|.+.+..|..+.++++|++|++++|.+. +.+|..+..+++|++|++++| .+.+..+..+..+++|+.
T Consensus 425 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n------~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC------QLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS------CCCEECTTTTTTCTTCCE
T ss_pred EEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC------ccccCChhhhhcccCCCE
Confidence 6666666666656666666666666666666655 345566666666666666654 233344555556666666
Q ss_pred eEecCceeeeccCCCcccccchhhhhhcC
Q 003435 791 VSMTTLNLMADEVPTETDAGASLREKNKH 819 (820)
Q Consensus 791 l~l~~~n~~~~~~~~~~~~~~~L~~L~L~ 819 (820)
|++++ |.+++..|..+..+++|++|+++
T Consensus 499 L~l~~-n~l~~~~~~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 499 LNMAS-NQLKSVPDGIFDRLTSLQKIWLH 526 (570)
T ss_dssp EECCS-SCCSCCCTTTTTTCTTCCEEECC
T ss_pred EeCCC-CcCCCCCHHHhhcccCCcEEEec
Confidence 66666 55666555566666666666655
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.7e-39 Score=364.43 Aligned_cols=455 Identities=17% Similarity=0.139 Sum_probs=231.8
Q ss_pred CCccEEEeecccccccCcc-ccCCceeEEEEeCCCCCcccC-ccccCcccccEEeccCccccccc-cccccCCcccEEec
Q 003435 281 RKLRTLLFLTVKMENLSFP-CQEFQCLRVLDLGQSGIIKLP-DSIGTLKHLRYLDLSHTYIRKIP-GSISKLKHLQTLDL 357 (820)
Q Consensus 281 ~~L~~L~l~~n~~~~l~~~-~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp-~~~~~L~~L~~L~L 357 (820)
++|++|++++|.+..++.. |..+++|++|+|++|.+..++ ..|+++++|++|+|++|.++.+| ..|+++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 4555555555555554333 555555555555555555443 34555555555555555555443 23555555555555
Q ss_pred cCCCCcc-ccchhccCCCCCcEEecCCCCCccccC-cccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccC
Q 003435 358 SNCYNLE-ELPKGICQLTNLRTLDISSCYSLTHMP-LGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLE 435 (820)
Q Consensus 358 ~~n~~~~-~lp~~~~~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~ 435 (820)
++|.+.+ ..|..++++++|++|++++|...+.+| ..+.++++|+.|+
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~------------------------------- 154 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE------------------------------- 154 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE-------------------------------
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeee-------------------------------
Confidence 5544433 233445555555555555554333333 2344444444444
Q ss_pred CCCChhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEec
Q 003435 436 NLKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLV 515 (820)
Q Consensus 436 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 515 (820)
+++|..... .+..+..+++|+.|++++|.+..++.+.+..+++|++|+++
T Consensus 155 -----------------------L~~n~l~~~-------~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 204 (549)
T 2z81_A 155 -----------------------IKALSLRNY-------QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204 (549)
T ss_dssp -----------------------EEETTCCEE-------CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEE
T ss_pred -----------------------ccCCccccc-------ChhhhhccccCceEecccCcccccchhhHhhcccccEEEcc
Confidence 333332211 11233444455555555555555555444445555555555
Q ss_pred ccccCCCC-----CCCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCC
Q 003435 516 DCTCQELP-----PLGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQ 590 (820)
Q Consensus 516 ~n~~~~l~-----~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 590 (820)
+|.+++++ ....+++|+.|++++|.+.......+ ......+++|+.+++.++.-. .+. ..........
T Consensus 205 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l--~~~~~~~~~L~~l~l~~~~~~-~~~----~~~~~~~~~~ 277 (549)
T 2z81_A 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL--LKLLRYILELSEVEFDDCTLN-GLG----DFNPSESDVV 277 (549)
T ss_dssp SCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHH--HGGGGGCTTCCEEEEESCEEE-CCS----CCCCCTTTCC
T ss_pred CCccccccccccchhhhhhcccceeccccccchhHHHHH--HHHhhhhcccccccccccccc-ccc----cccccchhhh
Confidence 55544431 12344555555555554332111100 011223445555555544210 000 0000001112
Q ss_pred CCCCcccEEEEcCCCCCCC-----CC----CCCCcCceEecccC-Ccccccc-CCCCCcceEEccCCCCCcccc---ccC
Q 003435 591 EPFPCLEKLVVEGCSMLNT-----LP----FIRNLKNLALCNSN-DKLVCSL-SRFPSLSSLVVDNFPELNCLS---DKT 656 (820)
Q Consensus 591 ~~~~~L~~L~l~~~~~~~~-----~~----~l~~L~~L~l~~~~-~~~~~~~-~~l~~L~~L~l~~n~~~~~~~---~~~ 656 (820)
..+++|+.|++.++.+... ++ ..++|+.|++++|. ...+..+ ..+++|++|++++|.+.+.++ ..+
T Consensus 278 ~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 357 (549)
T 2z81_A 278 SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357 (549)
T ss_dssp CCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCT
T ss_pred hhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhh
Confidence 2455566666665544321 11 13456666666665 2223233 356677777777777666543 235
Q ss_pred CCCCCccEEEEccCCCccchh--hhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCCCccccccCCCCCc
Q 003435 657 GNLNSLVKLTVNECDNLESLF--VFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSL 734 (820)
Q Consensus 657 ~~l~~L~~L~L~~n~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 734 (820)
+.+++|++|++++|.+.+..+ ..+..+++|++|++++|++. .+|..+..+++|++|++++|++. .+|..+ .++|
T Consensus 358 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L 433 (549)
T 2z81_A 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTL 433 (549)
T ss_dssp TSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTC
T ss_pred hccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCc
Confidence 666777777777776554322 34666777777777777544 56666666777777777777644 333332 2567
Q ss_pred cEEEeccCCCcccccccccCCCCcceEEEeCCchhhHHHhccccCCCcccccCCceeEecCceeeeccCCCcccccchhh
Q 003435 735 LELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDPIAQMEVVSMTTLNLMADEVPTETDAGASLR 814 (820)
Q Consensus 735 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~l~l~~~n~~~~~~~~~~~~~~~L~ 814 (820)
++|++++|++.+.+ ..+++|++|++++|. +.. .+.+..+++|+.|++++ |.+++.+|..+..+++|+
T Consensus 434 ~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~------l~~--ip~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~ 500 (549)
T 2z81_A 434 EVLDVSNNNLDSFS----LFLPRLQELYISRNK------LKT--LPDASLFPVLLVMKISR-NQLKSVPDGIFDRLTSLQ 500 (549)
T ss_dssp SEEECCSSCCSCCC----CCCTTCCEEECCSSC------CSS--CCCGGGCTTCCEEECCS-SCCCCCCTTGGGGCTTCC
T ss_pred eEEECCCCChhhhc----ccCChhcEEECCCCc------cCc--CCCcccCccCCEEecCC-CccCCcCHHHHhcCcccC
Confidence 77777777665532 356677777776652 221 12234566677777777 666666666667777777
Q ss_pred hhhcCC
Q 003435 815 EKNKHG 820 (820)
Q Consensus 815 ~L~L~~ 820 (820)
+|++++
T Consensus 501 ~L~l~~ 506 (549)
T 2z81_A 501 KIWLHT 506 (549)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 776653
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1e-39 Score=373.17 Aligned_cols=358 Identities=14% Similarity=0.123 Sum_probs=247.8
Q ss_pred CccccccccccccCCcccEEeccCCCCccc-----------------cchhcc--CCCCCcEEecCCCCCccccCcccCC
Q 003435 336 HTYIRKIPGSISKLKHLQTLDLSNCYNLEE-----------------LPKGIC--QLTNLRTLDISSCYSLTHMPLGIGK 396 (820)
Q Consensus 336 ~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~-----------------lp~~~~--~l~~L~~L~L~~n~~~~~~p~~~~~ 396 (820)
+|.++.+|..|+++++|++|+|++|.+.+. +|..++ ++++|++|++++|.+.+.+|..+++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 456666777777777777777777776664 777777 7777777777777777777777777
Q ss_pred CCCCCccCceeeC-Ccc--ccccccccccCCCCCceeecccCCCCChhhhhhhccccccccceeeEEeccCCccChhhHH
Q 003435 397 LRPLRKLPAFILG-KQR--FCAGLGELKLLDLRGRLEIKNLENLKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQ 473 (820)
Q Consensus 397 l~~L~~L~~~~~~-~~~--~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 473 (820)
+++|+.|++..+. +.. .+..+.
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~------------------------------------------------------- 296 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQ------------------------------------------------------- 296 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHH-------------------------------------------------------
T ss_pred CCCCCEEECcCCCCCccccchHHHH-------------------------------------------------------
Confidence 7777766554332 210 000000
Q ss_pred HHhhccCCCCCCcEEEEecCCCCCCCc--ccccCCCCccEEEecccccC-CCCCCCCCCCCcceeeccCcCceEeCcccc
Q 003435 474 ALIEFLRPPHNLKVLDLKGYRGSVFPS--WLNSGVPNLVKVSLVDCTCQ-ELPPLGQLPNLKDLYVKGMSAVQIIGYKFY 550 (820)
Q Consensus 474 ~~~~~l~~~~~L~~L~L~~n~~~~~~~--~~~~~l~~L~~L~L~~n~~~-~l~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 550 (820)
.+ ..+..+++|+.|++++|.++.+|. .+ ..+++|+.|++++|.++ .+|.++.+++|+.|++++|.+..+.
T Consensus 297 ~L-~~~~~l~~L~~L~L~~n~l~~ip~~~~l-~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp----- 369 (636)
T 4eco_A 297 AL-ADAPVGEKIQIIYIGYNNLKTFPVETSL-QKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIP----- 369 (636)
T ss_dssp HH-HHSGGGGTCCEEECCSSCCSSCCCHHHH-TTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECC-----
T ss_pred hh-hccccCCCCCEEECCCCcCCccCchhhh-ccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCcccccc-----
Confidence 00 012223578888888888887776 44 46888888888888777 7777778888888888888766321
Q ss_pred CCCcccCCCC-cceeecCCCcccccccccccCCCccCCCCCCC--CCcccEEEEcCCCCCCCCCCCCCcCceEecccCCc
Q 003435 551 GNDAIRGFPS-LKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEP--FPCLEKLVVEGCSMLNTLPFIRNLKNLALCNSNDK 627 (820)
Q Consensus 551 ~~~~~~~l~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~ 627 (820)
..+..+++ |++|+++++. +.. ++..+.. +++|++|++++|.+.+.+|.
T Consensus 370 --~~l~~l~~~L~~L~Ls~N~-l~~-----------lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~--------------- 420 (636)
T 4eco_A 370 --ANFCGFTEQVENLSFAHNK-LKY-----------IPNIFDAKSVSVMSAIDFSYNEIGSVDGK--------------- 420 (636)
T ss_dssp --TTSEEECTTCCEEECCSSC-CSS-----------CCSCCCTTCSSCEEEEECCSSCTTTTTTC---------------
T ss_pred --HhhhhhcccCcEEEccCCc-Ccc-----------cchhhhhcccCccCEEECcCCcCCCcchh---------------
Confidence 22344555 6666665542 111 1122212 34677777777766665543
Q ss_pred cccccC-------CCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhh-hcCC-------CCCcceEeec
Q 003435 628 LVCSLS-------RFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFV-FMQS-------FSSLRHLSIL 692 (820)
Q Consensus 628 ~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~-------l~~L~~L~l~ 692 (820)
.+. .+++|++|++++|.+....+..+..+++|++|++++|.+. .+|. .+.. +++|++|+++
T Consensus 421 ---~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls 496 (636)
T 4eco_A 421 ---NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLR 496 (636)
T ss_dssp ---SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECC
T ss_pred ---hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECc
Confidence 333 5678999999999988655555667899999999999877 4554 2322 3389999999
Q ss_pred cCcccccCccccC--CCCcccEEEecCCCCCCccccccCCCCCccEEEe------ccCCCcccccccccCCCCcceEEEe
Q 003435 693 HCDKLESLPMSLE--KFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSI------EGCPMLKLSLKSIEFLGQLQRLVIK 764 (820)
Q Consensus 693 ~n~~~~~~~~~l~--~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l------~~n~~~~~~~~~~~~l~~L~~L~l~ 764 (820)
+|.+. .+|..+. .+++|++|+|++|++.+ +|..+..+++|++|++ ++|.+.+.+|..+..+++|++|+++
T Consensus 497 ~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 497 FNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574 (636)
T ss_dssp SSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred CCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence 99866 6787776 89999999999998887 8888888999999999 5677788888899999999999998
Q ss_pred CCchhhHHHhccccCCCcccccCCceeEecCceeee
Q 003435 765 KCPQLERQRLMNALHESFDPIAQMEVVSMTTLNLMA 800 (820)
Q Consensus 765 ~~~~L~~~~~~~~~~~~~~~l~~L~~l~l~~~n~~~ 800 (820)
+|. +. ..+..+. ++|+.|++++ |.+.
T Consensus 575 ~N~------l~-~ip~~~~--~~L~~L~Ls~-N~l~ 600 (636)
T 4eco_A 575 SND------IR-KVNEKIT--PNISVLDIKD-NPNI 600 (636)
T ss_dssp SSC------CC-BCCSCCC--TTCCEEECCS-CTTC
T ss_pred CCc------CC-ccCHhHh--CcCCEEECcC-CCCc
Confidence 864 32 2344443 7899999999 5333
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.5e-38 Score=368.06 Aligned_cols=369 Identities=14% Similarity=0.093 Sum_probs=264.9
Q ss_pred ccccccccccccCCcccEEeccCCCCcc-----------------ccchhcc--CCCCCcEEecCCCCCccccCcccCCC
Q 003435 337 TYIRKIPGSISKLKHLQTLDLSNCYNLE-----------------ELPKGIC--QLTNLRTLDISSCYSLTHMPLGIGKL 397 (820)
Q Consensus 337 n~i~~lp~~~~~L~~L~~L~L~~n~~~~-----------------~lp~~~~--~l~~L~~L~L~~n~~~~~~p~~~~~l 397 (820)
|.++.+|..|+++++|++|+|++|.+.+ .+|..++ ++++|++|+|++|.+.+.+|..++++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 5666678778888888888888877766 3777776 88888888888887778888777777
Q ss_pred CCCCccCceeeC-Ccc--ccccccccccCCCCCceeecccCCCCChhhhhhhccccccccceeeEEeccCCccChhhHHH
Q 003435 398 RPLRKLPAFILG-KQR--FCAGLGELKLLDLRGRLEIKNLENLKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQA 474 (820)
Q Consensus 398 ~~L~~L~~~~~~-~~~--~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 474 (820)
++|+.|++..+. +.. .+ ..+..
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP-------------------------------------------------------~~i~~ 539 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLK-------------------------------------------------------ADWTR 539 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHH-------------------------------------------------------HHHHH
T ss_pred CCCCEEECcCCCCcccccch-------------------------------------------------------HHHHh
Confidence 777777554432 211 00 01111
Q ss_pred HhhccCCCCCCcEEEEecCCCCCCCc--ccccCCCCccEEEecccccCCCCCCCCCCCCcceeeccCcCceEeCccccCC
Q 003435 475 LIEFLRPPHNLKVLDLKGYRGSVFPS--WLNSGVPNLVKVSLVDCTCQELPPLGQLPNLKDLYVKGMSAVQIIGYKFYGN 552 (820)
Q Consensus 475 ~~~~l~~~~~L~~L~L~~n~~~~~~~--~~~~~l~~L~~L~L~~n~~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~ 552 (820)
+...+..+++|+.|++++|.+..+|. .+ ..+++|+.|++++|.++.+|.++.+++|+.|++++|.+..+.
T Consensus 540 L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l-~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp------- 611 (876)
T 4ecn_A 540 LADDEDTGPKIQIFYMGYNNLEEFPASASL-QKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIP------- 611 (876)
T ss_dssp HHHCTTTTTTCCEEECCSSCCCBCCCHHHH-TTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCC-------
T ss_pred hhhcccccCCccEEEeeCCcCCccCChhhh-hcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccch-------
Confidence 11234456788899999988888887 44 578899999999998888888888899999999988876332
Q ss_pred CcccCCCC-cceeecCCCcccccccccccCCCccCCCCCCCC--CcccEEEEcCCCCCCCCCCCCCcCceEecccCCccc
Q 003435 553 DAIRGFPS-LKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPF--PCLEKLVVEGCSMLNTLPFIRNLKNLALCNSNDKLV 629 (820)
Q Consensus 553 ~~~~~l~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 629 (820)
..+..+++ |+.|+++++. +.. ++..+... ++|+.|++++|.+.+.+|.++
T Consensus 612 ~~l~~l~~~L~~L~Ls~N~-L~~-----------lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~--------------- 664 (876)
T 4ecn_A 612 EDFCAFTDQVEGLGFSHNK-LKY-----------IPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS--------------- 664 (876)
T ss_dssp TTSCEECTTCCEEECCSSC-CCS-----------CCSCCCTTCSSCEEEEECCSSCTTTTSSSCS---------------
T ss_pred HHHhhccccCCEEECcCCC-CCc-----------CchhhhccccCCCCEEECcCCcCCCccccch---------------
Confidence 22345666 7777776653 221 22222223 348888888887766555322
Q ss_pred cccC--CCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhh-cC-------CCCCcceEeeccCccccc
Q 003435 630 CSLS--RFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVF-MQ-------SFSSLRHLSILHCDKLES 699 (820)
Q Consensus 630 ~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~-------~l~~L~~L~l~~n~~~~~ 699 (820)
..+. .+++|+.|++++|.+....+..+..+++|+.|+|++|.+. .+|.. +. ++++|++|+|++|.+. .
T Consensus 665 ~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~ 742 (876)
T 4ecn_A 665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-S 742 (876)
T ss_dssp SCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-C
T ss_pred hhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-c
Confidence 1122 3458999999999988554445568899999999999877 55543 32 2349999999999866 7
Q ss_pred CccccC--CCCcccEEEecCCCCCCccccccCCCCCccEEEecc------CCCcccccccccCCCCcceEEEeCCchhhH
Q 003435 700 LPMSLE--KFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEG------CPMLKLSLKSIEFLGQLQRLVIKKCPQLER 771 (820)
Q Consensus 700 ~~~~l~--~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~------n~~~~~~~~~~~~l~~L~~L~l~~~~~L~~ 771 (820)
+|..+. .+++|+.|+|++|++.+ +|..+..+++|+.|++++ |.+.+.+|..+.++++|+.|++++|.
T Consensus 743 lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~---- 817 (876)
T 4ecn_A 743 LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND---- 817 (876)
T ss_dssp CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC----
T ss_pred chHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC----
Confidence 888887 89999999999998887 788888999999999976 77888899999999999999999874
Q ss_pred HHhccccCCCcccccCCceeEecCceeeeccCCCccc
Q 003435 772 QRLMNALHESFDPIAQMEVVSMTTLNLMADEVPTETD 808 (820)
Q Consensus 772 ~~~~~~~~~~~~~l~~L~~l~l~~~n~~~~~~~~~~~ 808 (820)
+ +..+..+. ++|+.|++++ |.+....+..+.
T Consensus 818 --L-~~Ip~~l~--~~L~~LdLs~-N~l~~i~~~~~~ 848 (876)
T 4ecn_A 818 --I-RKVDEKLT--PQLYILDIAD-NPNISIDVTSVC 848 (876)
T ss_dssp --C-CBCCSCCC--SSSCEEECCS-CTTCEEECGGGH
T ss_pred --C-CccCHhhc--CCCCEEECCC-CCCCccChHHcc
Confidence 2 23344443 5899999999 655554444443
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.4e-38 Score=358.61 Aligned_cols=461 Identities=15% Similarity=0.192 Sum_probs=322.0
Q ss_pred CCCceeEEEeecc----CCCCcccCCCCccEEEeecccccccCcc-ccCCceeEEEEeCCCCCcccCcc-ccCcccccEE
Q 003435 259 IHTDIRHCTLVGD----LSSSTIPRARKLRTLLFLTVKMENLSFP-CQEFQCLRVLDLGQSGIIKLPDS-IGTLKHLRYL 332 (820)
Q Consensus 259 ~~~~~~~l~l~~~----~~~~~~~~~~~L~~L~l~~n~~~~l~~~-~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L 332 (820)
+...++.+.+.++ +.+..|..+++|++|++++|.+..++.. |..+++|++|+|++|.+..+|.. |+++++|++|
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 3467899999888 3567899999999999999999998865 99999999999999999988754 9999999999
Q ss_pred eccCcccccc--ccccccCCcccEEeccCCCCccccc-hhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeC
Q 003435 333 DLSHTYIRKI--PGSISKLKHLQTLDLSNCYNLEELP-KGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILG 409 (820)
Q Consensus 333 ~Ls~n~i~~l--p~~~~~L~~L~~L~L~~n~~~~~lp-~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~ 409 (820)
+|++|.++.+ |..++++++|++|++++|...+.+| ..++++++|++|++++|.+.+..|..++.+++|+.|++..+.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 9999999954 6889999999999999998777776 579999999999999999888888888888877777554332
Q ss_pred CccccccccccccCCCCCceeecccCCCCChhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEE
Q 003435 410 KQRFCAGLGELKLLDLRGRLEIKNLENLKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLD 489 (820)
Q Consensus 410 ~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 489 (820)
....+ . ..+..+++|+.|+
T Consensus 184 ~~~~~-----------------------------------------------------------~--~~~~~l~~L~~L~ 202 (549)
T 2z81_A 184 SAFLL-----------------------------------------------------------E--IFADILSSVRYLE 202 (549)
T ss_dssp STTHH-----------------------------------------------------------H--HHHHSTTTBSEEE
T ss_pred ccccc-----------------------------------------------------------h--hhHhhcccccEEE
Confidence 21100 0 0012245677777
Q ss_pred EecCCCCCC---CcccccCCCCccEEEecccccCC-----CCC-CCCCCCCcceeeccCcCceEeCccccCCCcccCCCC
Q 003435 490 LKGYRGSVF---PSWLNSGVPNLVKVSLVDCTCQE-----LPP-LGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPS 560 (820)
Q Consensus 490 L~~n~~~~~---~~~~~~~l~~L~~L~L~~n~~~~-----l~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~ 560 (820)
+++|.+..+ +..+...+++|+.|++++|.+++ ++. +..+++|+.+++++|.+.+...........+..+++
T Consensus 203 L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~ 282 (549)
T 2z81_A 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282 (549)
T ss_dssp EESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTT
T ss_pred ccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcc
Confidence 777766554 22333456677777777775432 111 455667777777777655432221111223345666
Q ss_pred cceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCC-----CCCcCceEecccCCcc-----cc
Q 003435 561 LKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPF-----IRNLKNLALCNSNDKL-----VC 630 (820)
Q Consensus 561 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-----l~~L~~L~l~~~~~~~-----~~ 630 (820)
|+.|.+.++. +..+.. ....+.....+++|+.|++++|.+. .+|. +++|+.|++++|.... ..
T Consensus 283 L~~L~l~~~~-i~~~~~-----~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 355 (549)
T 2z81_A 283 VETVTIRRLH-IPQFYL-----FYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355 (549)
T ss_dssp CCEEEEESCB-CSCGGG-----SCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHT
T ss_pred cccccccccc-cchhhh-----cccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchh
Confidence 7777665542 111000 0000111113467888888887653 5552 6788888888887332 23
Q ss_pred ccCCCCCcceEEccCCCCCcccc--ccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCC
Q 003435 631 SLSRFPSLSSLVVDNFPELNCLS--DKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFC 708 (820)
Q Consensus 631 ~~~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 708 (820)
.+..+++|++|++++|.+.+..+ ..+..+++|++|++++|++. .+|..+..+++|++|++++|.+. .+|..+ .+
T Consensus 356 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~ 431 (549)
T 2z81_A 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQ 431 (549)
T ss_dssp CTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CT
T ss_pred hhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cC
Confidence 46778888888888888766532 45777888888888888665 56667778888888888888754 344333 25
Q ss_pred cccEEEecCCCCCCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCchhhHHHhccccCCCcccccCC
Q 003435 709 SLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDPIAQM 788 (820)
Q Consensus 709 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L 788 (820)
+|++|++++|++.+.+ ..+++|++|++++|++.. +|. ...+++|++|++++| .+.+..+..+..+++|
T Consensus 432 ~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~-ip~-~~~l~~L~~L~Ls~N------~l~~~~~~~~~~l~~L 499 (549)
T 2z81_A 432 TLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKT-LPD-ASLFPVLLVMKISRN------QLKSVPDGIFDRLTSL 499 (549)
T ss_dssp TCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSS-CCC-GGGCTTCCEEECCSS------CCCCCCTTGGGGCTTC
T ss_pred CceEEECCCCChhhhc----ccCChhcEEECCCCccCc-CCC-cccCccCCEEecCCC------ccCCcCHHHHhcCccc
Confidence 7888888888776542 457888888888888764 554 456788888888875 3445555667788888
Q ss_pred ceeEecCceeeeccCC
Q 003435 789 EVVSMTTLNLMADEVP 804 (820)
Q Consensus 789 ~~l~l~~~n~~~~~~~ 804 (820)
+.+++++ |.+.+..|
T Consensus 500 ~~L~l~~-N~~~~~~~ 514 (549)
T 2z81_A 500 QKIWLHT-NPWDCSCP 514 (549)
T ss_dssp CEEECCS-SCBCCCHH
T ss_pred CEEEecC-CCccCCCc
Confidence 8888888 66655433
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=350.36 Aligned_cols=448 Identities=16% Similarity=0.091 Sum_probs=322.1
Q ss_pred cEEEeecccccccCccccCCceeEEEEeCCCCCcccC-ccccCcccccEEeccCcccccc-ccccccCCcccEEeccCCC
Q 003435 284 RTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLP-DSIGTLKHLRYLDLSHTYIRKI-PGSISKLKHLQTLDLSNCY 361 (820)
Q Consensus 284 ~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~l-p~~~~~L~~L~~L~L~~n~ 361 (820)
+++++++|.++.+|..+. ++|++|+|++|.+..++ ..|.++++|++|+|++|.++.+ |..|+++++|++|+|++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 467777777777776654 77888888888887765 5677788888888888888766 6677888888888888866
Q ss_pred CccccchhccCCCCCcEEecCCCCCcc-ccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCCCCCh
Q 003435 362 NLEELPKGICQLTNLRTLDISSCYSLT-HMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLKNV 440 (820)
Q Consensus 362 ~~~~lp~~~~~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~ 440 (820)
+. .+|.. .+++|++|++++|.+.+ .+|..++++++|++|++..+.+...
T Consensus 81 l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~--------------------------- 130 (520)
T 2z7x_B 81 LV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS--------------------------- 130 (520)
T ss_dssp CC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---------------------------
T ss_pred ee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---------------------------
Confidence 54 56654 67888888888887665 4667777777777777665543210
Q ss_pred hhhhhhcccccccc--ceeeEEeccC--CccChhhHHHHhhccCCCC-CCcEEEEecCCC-CCCCcccccCCCCccEEEe
Q 003435 441 VDAEEAKLHDKVHI--RSLGLSWSRN--AQMRDDKAQALIEFLRPPH-NLKVLDLKGYRG-SVFPSWLNSGVPNLVKVSL 514 (820)
Q Consensus 441 ~~~~~~~l~~~~~L--~~L~l~~~~~--~~~~~~~~~~~~~~l~~~~-~L~~L~L~~n~~-~~~~~~~~~~l~~L~~L~L 514 (820)
.+..+..+ +.+++++|.. ... .+..+..+. +...+++++|.+ ..++...+..+++|+.|++
T Consensus 131 ------~~~~l~~L~L~~L~l~~n~l~~~~~-------~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l 197 (520)
T 2z7x_B 131 ------SVLPIAHLNISKVLLVLGETYGEKE-------DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197 (520)
T ss_dssp ------GGGGGTTSCEEEEEEEECTTTTSSC-------CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCE
T ss_pred ------hccccccceeeEEEeeccccccccc-------ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccc
Confidence 12222333 6666666653 111 112222222 122455555553 3455555567888999999
Q ss_pred cccc-------c-CCCCCCCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccC
Q 003435 515 VDCT-------C-QELPPLGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEF 586 (820)
Q Consensus 515 ~~n~-------~-~~l~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 586 (820)
++|. + ..++.++.+++|+.|++++|.+......... .....++|++|++.++.- . +.+
T Consensus 198 ~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~---~~~~~~~L~~L~l~~n~l-~----------~~~ 263 (520)
T 2z7x_B 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRIL---QLVWHTTVWYFSISNVKL-Q----------GQL 263 (520)
T ss_dssp EECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHH---HHHHTSSCSEEEEEEEEE-E----------SCC
T ss_pred cccccccccceeecchhhhccccchhhccccccccCHHHHHHHH---HHhhhCcccEEEeecccc-c----------Ccc
Confidence 8884 2 2234477888999999988765432110000 001235788888876531 1 122
Q ss_pred CCCC-----CCCCcccEEEEcCCCCCCCCCC--------CCCcCceEecccCCccccccCCCCCcceEEccCCCCCcccc
Q 003435 587 DGMQ-----EPFPCLEKLVVEGCSMLNTLPF--------IRNLKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLS 653 (820)
Q Consensus 587 ~~~~-----~~~~~L~~L~l~~~~~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 653 (820)
+..+ ..+++|+.+++++|.+ .+|. -.+|+.|++++|.......+..+++|++|++++|.+.+..|
T Consensus 264 p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 341 (520)
T 2z7x_B 264 DFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF 341 (520)
T ss_dssp CCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTT
T ss_pred ccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhh
Confidence 2222 5789999999999987 5662 25799999999985444434789999999999999999889
Q ss_pred ccCCCCCCccEEEEccCCCcc--chhhhcCCCCCcceEeeccCcccccCccc-cCCCCcccEEEecCCCCCCccccccCC
Q 003435 654 DKTGNLNSLVKLTVNECDNLE--SLFVFMQSFSSLRHLSILHCDKLESLPMS-LEKFCSLQKLDIVECPRLVHIPDIMGQ 730 (820)
Q Consensus 654 ~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~ 730 (820)
..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|++.+.+|..+.
T Consensus 342 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~- 420 (520)
T 2z7x_B 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP- 420 (520)
T ss_dssp TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC-
T ss_pred hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc-
Confidence 999999999999999999886 56678999999999999999988766654 88899999999999999888887664
Q ss_pred CCCccEEEeccCCCcccccccccCCCCcceEEEeCCchhhHHHhccccCCCcccccCCceeEecCceeeecc
Q 003435 731 HSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDPIAQMEVVSMTTLNLMADE 802 (820)
Q Consensus 731 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~l~l~~~n~~~~~ 802 (820)
++|++|++++|++. .+|..+..+++|++|++++|. +.......+..+++|+.+++++ |.+++.
T Consensus 421 -~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~------l~~l~~~~~~~l~~L~~L~l~~-N~~~c~ 483 (520)
T 2z7x_B 421 -PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQ------LKSVPDGIFDRLTSLQKIWLHT-NPWDCS 483 (520)
T ss_dssp -TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC------CCCCCTTTTTTCTTCCEEECCS-SCBCCC
T ss_pred -ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCc------CCccCHHHhccCCcccEEECcC-CCCccc
Confidence 79999999999988 577777799999999999963 3334344588899999999999 777654
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-37 Score=348.06 Aligned_cols=428 Identities=17% Similarity=0.117 Sum_probs=303.3
Q ss_pred CCccEEEeecccccccCcc-ccCCceeEEEEeCCCCCccc-CccccCcccccEEeccCccccccccccccCCcccEEecc
Q 003435 281 RKLRTLLFLTVKMENLSFP-CQEFQCLRVLDLGQSGIIKL-PDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLS 358 (820)
Q Consensus 281 ~~L~~L~l~~n~~~~l~~~-~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~ 358 (820)
++|++|++++|.+..++.. |..+++|++|+|++|.++.+ |..|+++++|++|+|++|.|+.+|.. .+++|++|+|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence 7999999999999988865 89999999999999999977 67899999999999999999999876 89999999999
Q ss_pred CCCCcc-ccchhccCCCCCcEEecCCCCCccccCcccCCCCCC--CccCceeeCC--c-cccccccccc----cCCCCCc
Q 003435 359 NCYNLE-ELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPL--RKLPAFILGK--Q-RFCAGLGELK----LLDLRGR 428 (820)
Q Consensus 359 ~n~~~~-~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L--~~L~~~~~~~--~-~~~~~l~~L~----~L~l~~~ 428 (820)
+|.+.+ .+|..++++++|++|++++|.+.+ ..+..+++| +.|++..+.. . ..+..+..+. .+++.++
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 175 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSS
T ss_pred CCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccC
Confidence 988876 578889999999999999998655 456677777 8888877765 1 1222333322 1122221
Q ss_pred eeecccCCCCChhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCC-----CCcccc
Q 003435 429 LEIKNLENLKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSV-----FPSWLN 503 (820)
Q Consensus 429 ~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~-----~~~~~~ 503 (820)
.. ........+..+..|+.+++++|....... ...+....+..+++|+.|++++|.+.. ++...
T Consensus 176 ~~---------~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~- 244 (520)
T 2z7x_B 176 KE---------FHFILDVSVKTVANLELSNIKCVLEDNKCS-YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV- 244 (520)
T ss_dssp SC---------CCCCCCCCCTTCSEEEECCEEECCSTTTTH-HHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH-
T ss_pred cc---------hhhhhhhhhhcccceeeccccccccccccc-eeecchhhhccccchhhccccccccCHHHHHHHHHHh-
Confidence 11 111222345567888888888875322211 233344477788899999998876432 11111
Q ss_pred cCCCCccEEEecccccC-CCCC-C-----CCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecCCCccccccc
Q 003435 504 SGVPNLVKVSLVDCTCQ-ELPP-L-----GQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWK 576 (820)
Q Consensus 504 ~~l~~L~~L~L~~n~~~-~l~~-l-----~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 576 (820)
..++|++|++++|.++ .+|. + +.+++|+.+++++|.+ .+.... +..+
T Consensus 245 -~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~------~~~~------------------ 298 (520)
T 2z7x_B 245 -WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSY------IYEI------------------ 298 (520)
T ss_dssp -HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHH------HHHH------------------
T ss_pred -hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhh------hhcc------------------
Confidence 2468999999999777 5666 5 7788888888888765 211000 0011
Q ss_pred ccccCCCccCCCCCCCCCcccEEEEcCCCCCCCC--CCCCCcCceEecccC--CccccccCCCCCcceEEccCCCCCc--
Q 003435 577 GQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTL--PFIRNLKNLALCNSN--DKLVCSLSRFPSLSSLVVDNFPELN-- 650 (820)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~l~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~n~~~~-- 650 (820)
+ .-++|+.|++++|.+.... ..+++|+.|++++|. ...+..+..+++|++|++++|.+.+
T Consensus 299 -------------~-~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 364 (520)
T 2z7x_B 299 -------------F-SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364 (520)
T ss_dssp -------------H-HTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH
T ss_pred -------------c-ccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc
Confidence 0 0023444444444433322 224444555555444 2234467788899999999998876
Q ss_pred cccccCCCCCCccEEEEccCCCccchhh-hcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCCCccccccC
Q 003435 651 CLSDKTGNLNSLVKLTVNECDNLESLFV-FMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLVHIPDIMG 729 (820)
Q Consensus 651 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 729 (820)
.+|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+.+|..+. ++|++|++++|++. .+|..+.
T Consensus 365 ~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~ 441 (520)
T 2z7x_B 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV 441 (520)
T ss_dssp HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG
T ss_pred cchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh
Confidence 5567788899999999999988875665 478889999999999988777776664 78999999999776 7777777
Q ss_pred CCCCccEEEeccCCCcccccccccCCCCcceEEEeCCc
Q 003435 730 QHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCP 767 (820)
Q Consensus 730 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 767 (820)
.+++|++|++++|++.+..+..+..+++|++|++++|+
T Consensus 442 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 442 KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCC
Confidence 89999999999998886444458888999999998875
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.4e-38 Score=356.93 Aligned_cols=350 Identities=15% Similarity=0.113 Sum_probs=209.1
Q ss_pred CCCCcccCccccCcccccEEeccCccccc------------------cccccc--cCCcccEEeccCCCCccccchhccC
Q 003435 313 QSGIIKLPDSIGTLKHLRYLDLSHTYIRK------------------IPGSIS--KLKHLQTLDLSNCYNLEELPKGICQ 372 (820)
Q Consensus 313 ~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~------------------lp~~~~--~L~~L~~L~L~~n~~~~~lp~~~~~ 372 (820)
+|+++.+|+.|+++++|++|+|++|.++. +|..++ ++++|++|+|++|.+.+.+|..+++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 45666788888888888888888888887 888888 8888888888888888888888888
Q ss_pred CCCCcEEecCCCC-Ccc-ccCcccCCC------CCCCccCceeeCCccccccccccccCCCCCceeecccCCCCChhhhh
Q 003435 373 LTNLRTLDISSCY-SLT-HMPLGIGKL------RPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLKNVVDAE 444 (820)
Q Consensus 373 l~~L~~L~L~~n~-~~~-~~p~~~~~l------~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~ 444 (820)
+++|++|++++|. +.+ .+|..++++ ++|+.|++..+.+..++.
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~----------------------------- 322 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV----------------------------- 322 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCC-----------------------------
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCc-----------------------------
Confidence 8888888888887 666 788877776 888888776654432210
Q ss_pred hhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCC-CCCcccccCCCCccEEEecccccCCCC
Q 003435 445 EAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGS-VFPSWLNSGVPNLVKVSLVDCTCQELP 523 (820)
Q Consensus 445 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~L~~n~~~~l~ 523 (820)
...+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.++.+|
T Consensus 323 -------------------------------~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~~lp 369 (636)
T 4eco_A 323 -------------------------------ETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQITEIP 369 (636)
T ss_dssp -------------------------------HHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEEECC
T ss_pred -------------------------------hhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCcccccc
Confidence 002333445666666666655 555 2234566666666666655555
Q ss_pred C-CCCCCC-CcceeeccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCC-------CCC
Q 003435 524 P-LGQLPN-LKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQE-------PFP 594 (820)
Q Consensus 524 ~-l~~l~~-L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~ 594 (820)
. ++.+++ |+.|++++|.+..+.. .+ ....+++|+.|+++++.-- ...+..+. .++
T Consensus 370 ~~l~~l~~~L~~L~Ls~N~l~~lp~-~~----~~~~l~~L~~L~Ls~N~l~-----------~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 370 ANFCGFTEQVENLSFAHNKLKYIPN-IF----DAKSVSVMSAIDFSYNEIG-----------SVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp TTSEEECTTCCEEECCSSCCSSCCS-CC----CTTCSSCEEEEECCSSCTT-----------TTTTCSSCTTCSSCCCCC
T ss_pred HhhhhhcccCcEEEccCCcCcccch-hh----hhcccCccCEEECcCCcCC-----------CcchhhhcccccccccCC
Confidence 5 566666 6666666666553211 10 0012335566665554211 11111121 456
Q ss_pred cccEEEEcCCCCCCCCCC-----CCCcCceEecccCCc-cccc-c-------CCCCCcceEEccCCCCCccccccCC--C
Q 003435 595 CLEKLVVEGCSMLNTLPF-----IRNLKNLALCNSNDK-LVCS-L-------SRFPSLSSLVVDNFPELNCLSDKTG--N 658 (820)
Q Consensus 595 ~L~~L~l~~~~~~~~~~~-----l~~L~~L~l~~~~~~-~~~~-~-------~~l~~L~~L~l~~n~~~~~~~~~~~--~ 658 (820)
+|++|++++|.+. .+|. +++|+.|++++|... .+.. + .++++|++|++++|.+. .+|..+. .
T Consensus 434 ~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~ 511 (636)
T 4eco_A 434 NVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT 511 (636)
T ss_dssp CEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTT
T ss_pred CCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhcc
Confidence 7888888888766 3442 344555555554421 1111 1 11225666666666555 3444443 5
Q ss_pred CCCccEEEEccCCCccchhhhcCCCCCcceEee------ccCcccccCccccCCCCcccEEEecCCCCCCccccccCCCC
Q 003435 659 LNSLVKLTVNECDNLESLFVFMQSFSSLRHLSI------LHCDKLESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHS 732 (820)
Q Consensus 659 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l------~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~ 732 (820)
+++|++|+|++|++.+ +|..+..+++|++|++ ++|.+.+.+|..+..+++|++|+|++|++ +.+|..+. +
T Consensus 512 l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~ 587 (636)
T 4eco_A 512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--P 587 (636)
T ss_dssp CTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--T
T ss_pred CCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--C
Confidence 6666666666665555 4555555666666666 33444555555565666666666666655 45555443 5
Q ss_pred CccEEEeccCCCcc
Q 003435 733 SLLELSIEGCPMLK 746 (820)
Q Consensus 733 ~L~~L~l~~n~~~~ 746 (820)
+|++|++++|++..
T Consensus 588 ~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 588 NISVLDIKDNPNIS 601 (636)
T ss_dssp TCCEEECCSCTTCE
T ss_pred cCCEEECcCCCCcc
Confidence 56666666665544
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.4e-37 Score=358.00 Aligned_cols=352 Identities=15% Similarity=0.116 Sum_probs=232.0
Q ss_pred CCCcccCccccCcccccEEeccCccccc------------------cccccc--cCCcccEEeccCCCCccccchhccCC
Q 003435 314 SGIIKLPDSIGTLKHLRYLDLSHTYIRK------------------IPGSIS--KLKHLQTLDLSNCYNLEELPKGICQL 373 (820)
Q Consensus 314 n~l~~lp~~~~~l~~L~~L~Ls~n~i~~------------------lp~~~~--~L~~L~~L~L~~n~~~~~lp~~~~~l 373 (820)
|.++.+|..|+++++|++|+|++|.++. +|..++ ++++|++|+|++|.+.+.+|..|+++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 5666799999999999999999999997 998887 99999999999999999999999999
Q ss_pred CCCcEEecCCCC-Ccc-ccCcccCCCC-------CCCccCceeeCCccccccccccccCCCCCceeecccCCCCChhhhh
Q 003435 374 TNLRTLDISSCY-SLT-HMPLGIGKLR-------PLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLKNVVDAE 444 (820)
Q Consensus 374 ~~L~~L~L~~n~-~~~-~~p~~~~~l~-------~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~ 444 (820)
++|++|++++|. +.+ .+|..+++++ +|+.|++..+.+..
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~-------------------------------- 562 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-------------------------------- 562 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB--------------------------------
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc--------------------------------
Confidence 999999999998 776 7888776554 44444333222211
Q ss_pred hhccccccccceeeEEeccCCccChhhHHHHhh--ccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEecccccCCC
Q 003435 445 EAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIE--FLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQEL 522 (820)
Q Consensus 445 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l 522 (820)
++. .+..+++|+.|++++|.+..+| .+..+++|+.|++++|.++.+
T Consensus 563 ------------------------------ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~~l 610 (876)
T 4ecn_A 563 ------------------------------FPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEI 610 (876)
T ss_dssp ------------------------------CCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSCCSCC
T ss_pred ------------------------------cCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCccccc
Confidence 112 3555678888888888877777 345678888888888877777
Q ss_pred CC-CCCCCC-CcceeeccCcCceEeCccccCCCcccC--CCCcceeecCCCcccccccccccCCCccCCCCCC--CCCcc
Q 003435 523 PP-LGQLPN-LKDLYVKGMSAVQIIGYKFYGNDAIRG--FPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQE--PFPCL 596 (820)
Q Consensus 523 ~~-l~~l~~-L~~L~L~~n~~~~~~~~~~~~~~~~~~--l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~L 596 (820)
|. +..+++ |+.|++++|.+..+. ..+.. .++|+.|+++++.--..+. .++.... ..++|
T Consensus 611 p~~l~~l~~~L~~L~Ls~N~L~~lp-------~~~~~~~~~~L~~L~Ls~N~l~g~ip--------~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 611 PEDFCAFTDQVEGLGFSHNKLKYIP-------NIFNAKSVYVMGSVDFSYNKIGSEGR--------NISCSMDDYKGINA 675 (876)
T ss_dssp CTTSCEECTTCCEEECCSSCCCSCC-------SCCCTTCSSCEEEEECCSSCTTTTSS--------SCSSCTTTCCCCCE
T ss_pred hHHHhhccccCCEEECcCCCCCcCc-------hhhhccccCCCCEEECcCCcCCCccc--------cchhhhccccCCCc
Confidence 76 778887 888888888766432 11222 2347778777653211100 1111111 34589
Q ss_pred cEEEEcCCCCCCCCCCCCCcCceEecccCCccccccCCCCCcceEEccCCCCCccccccCC-------CCCCccEEEEcc
Q 003435 597 EKLVVEGCSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTG-------NLNSLVKLTVNE 669 (820)
Q Consensus 597 ~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-------~l~~L~~L~L~~ 669 (820)
+.|++++|.+. .+|. ..+..+++|+.|++++|.+....+..+. ++++|+.|+|++
T Consensus 676 ~~L~Ls~N~L~-~lp~-----------------~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 676 STVTLSYNEIQ-KFPT-----------------ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737 (876)
T ss_dssp EEEECCSSCCC-SCCH-----------------HHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred CEEEccCCcCC-ccCH-----------------HHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCC
Confidence 99999998766 4442 0122455566666666655522222222 122666666666
Q ss_pred CCCccchhhhcC--CCCCcceEeeccCcccccCccccCCCCcccEEEecC------CCCCCccccccCCCCCccEEEecc
Q 003435 670 CDNLESLFVFMQ--SFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVE------CPRLVHIPDIMGQHSSLLELSIEG 741 (820)
Q Consensus 670 n~~~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~------n~~~~~~~~~~~~l~~L~~L~l~~ 741 (820)
|++. .+|..+. .+++|+.|+|++|.+.+ +|..+..+++|+.|+|++ |.+.+.+|..+..+++|+.|++++
T Consensus 738 N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~ 815 (876)
T 4ecn_A 738 NKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815 (876)
T ss_dssp SCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred CCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCC
Confidence 6554 4455454 66666666666666554 566666666666666654 555666666666666666666666
Q ss_pred CCCcccccccccCCCCcceEEEeCCc
Q 003435 742 CPMLKLSLKSIEFLGQLQRLVIKKCP 767 (820)
Q Consensus 742 n~~~~~~~~~~~~l~~L~~L~l~~~~ 767 (820)
|++ +.+|..+. ++|+.|++++|+
T Consensus 816 N~L-~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 816 NDI-RKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp SCC-CBCCSCCC--SSSCEEECCSCT
T ss_pred CCC-CccCHhhc--CCCCEEECCCCC
Confidence 666 44555443 466666666654
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1e-36 Score=352.61 Aligned_cols=504 Identities=18% Similarity=0.128 Sum_probs=286.4
Q ss_pred CCCceeEEEeecc----CCCCcccCCCCccEEEeecccccccCcc-ccCCceeEEEEeCCCCCcccC-ccccCcccccEE
Q 003435 259 IHTDIRHCTLVGD----LSSSTIPRARKLRTLLFLTVKMENLSFP-CQEFQCLRVLDLGQSGIIKLP-DSIGTLKHLRYL 332 (820)
Q Consensus 259 ~~~~~~~l~l~~~----~~~~~~~~~~~L~~L~l~~n~~~~l~~~-~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L 332 (820)
++.+++.+.++++ +++.+|.++++|++|++++|.++.+++. |.++++|++|+|++|+++.+| ..|.++++|++|
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 3445555555555 2444555555566666655555555544 555555666666655555554 235555556666
Q ss_pred eccCccccccc-cccccCCcccEEeccCCCCcc-ccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCce----
Q 003435 333 DLSHTYIRKIP-GSISKLKHLQTLDLSNCYNLE-ELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAF---- 406 (820)
Q Consensus 333 ~Ls~n~i~~lp-~~~~~L~~L~~L~L~~n~~~~-~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~---- 406 (820)
+|++|.++.+| ..|+++++|++|+|++|.+.. .+|..++.+++|++|++++|.+.+..|..+..+.+++.+...
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence 66555555553 345555556666665555433 344555555556666665555544444444444444332211
Q ss_pred eeCCccccc---cccccccCCCCCceeecccCCCCChhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCC
Q 003435 407 ILGKQRFCA---GLGELKLLDLRGRLEIKNLENLKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPH 483 (820)
Q Consensus 407 ~~~~~~~~~---~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~ 483 (820)
.+....... ....+..+++.++ . .........+.+...++...+............ ......+....
T Consensus 210 ~n~l~~i~~~~~~~~~~~~l~l~~n--------~-~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~-~~~~~~~~~~~ 279 (635)
T 4g8a_A 210 LNPMNFIQPGAFKEIRLHKLTLRNN--------F-DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE-KFDKSALEGLC 279 (635)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESC--------C-SSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS-CCCTTTTGGGG
T ss_pred cCcccccCcccccchhhhhhhhhcc--------c-ccccccchhhcCCcccccccccccccccccccc-ccccccccccc
Confidence 111110000 0000011111100 0 011111222223333333333222111000000 00001111222
Q ss_pred CCcEEEEecCCCCCCCc---ccccCCCCccEEEecccccCCCCCCCCCCCCcceeeccCcCceEeCccccCCCcccCCCC
Q 003435 484 NLKVLDLKGYRGSVFPS---WLNSGVPNLVKVSLVDCTCQELPPLGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPS 560 (820)
Q Consensus 484 ~L~~L~L~~n~~~~~~~---~~~~~l~~L~~L~L~~n~~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~ 560 (820)
.+....+..+....... ..+....+++.+.+.++.+..++.+....+|+.|++.+|.+..... ..++.
T Consensus 280 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---------~~l~~ 350 (635)
T 4g8a_A 280 NLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT---------LKLKS 350 (635)
T ss_dssp GSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCC---------CBCTT
T ss_pred chhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCc---------ccchh
Confidence 34444443332221111 1123456677777777766666666666777777777775543321 24556
Q ss_pred cceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCC--CC----CCCCcCceEecccC-CccccccC
Q 003435 561 LKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNT--LP----FIRNLKNLALCNSN-DKLVCSLS 633 (820)
Q Consensus 561 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~----~l~~L~~L~l~~~~-~~~~~~~~ 633 (820)
|+.+.+.++..- .......+++|+.|++++|..... .+ ...+|+.+++..+. ......+.
T Consensus 351 L~~l~l~~n~~~-------------~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~ 417 (635)
T 4g8a_A 351 LKRLTFTSNKGG-------------NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFL 417 (635)
T ss_dssp CCEEEEESCCSC-------------CBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCT
T ss_pred hhhcccccccCC-------------CCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccccc
Confidence 666665543211 011122577888888888866431 12 25678888887776 34455677
Q ss_pred CCCCcceEEccCCCCCcccc-ccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccc-cCccccCCCCccc
Q 003435 634 RFPSLSSLVVDNFPELNCLS-DKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLE-SLPMSLEKFCSLQ 711 (820)
Q Consensus 634 ~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~ 711 (820)
.+++|+.++++.+......+ ..+..+++++.+++++|.+....+..+..+++|++|++++|...+ ..|..+..+++|+
T Consensus 418 ~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~ 497 (635)
T 4g8a_A 418 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 497 (635)
T ss_dssp TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred ccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccC
Confidence 78888888888777655443 457778888888888888877777788888888888888887544 4567788888888
Q ss_pred EEEecCCCCCCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCchhhHHHhccccCCCcccc-cCCce
Q 003435 712 KLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDPI-AQMEV 790 (820)
Q Consensus 712 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l-~~L~~ 790 (820)
+|+|++|++.+..|..|.++++|++|+|++|++.+..|..|.++++|++|++++ |++.+..+..+..+ ++|+.
T Consensus 498 ~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~l~~l~~~L~~ 571 (635)
T 4g8a_A 498 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL------NHIMTSKKQELQHFPSSLAF 571 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT------SCCCBCCSSCTTCCCTTCCE
T ss_pred EEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC------CcCCCCCHHHHHhhhCcCCE
Confidence 888888888888888888888888888888888887778888888888888877 44566667777776 57888
Q ss_pred eEecCceeeec
Q 003435 791 VSMTTLNLMAD 801 (820)
Q Consensus 791 l~l~~~n~~~~ 801 (820)
|++++ |.++.
T Consensus 572 L~L~~-Np~~C 581 (635)
T 4g8a_A 572 LNLTQ-NDFAC 581 (635)
T ss_dssp EECTT-CCBCC
T ss_pred EEeeC-CCCcc
Confidence 88888 55543
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.4e-35 Score=330.97 Aligned_cols=455 Identities=15% Similarity=0.089 Sum_probs=290.0
Q ss_pred CccEEEeecccccccCccccCCceeEEEEeCCCCCcccC-ccccCcccccEEeccCcccccc-ccccccCCcccEEeccC
Q 003435 282 KLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLP-DSIGTLKHLRYLDLSHTYIRKI-PGSISKLKHLQTLDLSN 359 (820)
Q Consensus 282 ~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~l-p~~~~~L~~L~~L~L~~ 359 (820)
..+++++++|.++.+|..+. ++|++|+|++|.+..+| ..|+++++|++|+|++|.|+.+ |..|+++++|++|+|++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 33666666666666665533 56677777777776664 4566777777777777776665 55666777777777776
Q ss_pred CCCccccchhccCCCCCcEEecCCCCCcc-ccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCCCC
Q 003435 360 CYNLEELPKGICQLTNLRTLDISSCYSLT-HMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLK 438 (820)
Q Consensus 360 n~~~~~lp~~~~~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~ 438 (820)
|.+. .+|.. .+++|++|++++|.+.+ .+|..|+++++|+.|++..+.+...
T Consensus 110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~------------------------- 161 (562)
T 3a79_B 110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL------------------------- 161 (562)
T ss_dssp SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-------------------------
T ss_pred CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-------------------------
Confidence 5543 55554 66777777777766544 2345666666666665544332210
Q ss_pred Chhhhhhhcccccc--ccceeeEEeccC--CccChhhHHHHhhccCCCC-CCcEEEEecCCCC-CCCcccccCCCCccEE
Q 003435 439 NVVDAEEAKLHDKV--HIRSLGLSWSRN--AQMRDDKAQALIEFLRPPH-NLKVLDLKGYRGS-VFPSWLNSGVPNLVKV 512 (820)
Q Consensus 439 ~~~~~~~~~l~~~~--~L~~L~l~~~~~--~~~~~~~~~~~~~~l~~~~-~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L 512 (820)
.+.++. +|+.+++++|.. .... +..+..+. ..-.+++++|.+. .++...+..+++|+.|
T Consensus 162 --------~~~~l~~L~L~~L~L~~n~l~~~~~~-------~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L 226 (562)
T 3a79_B 162 --------DLLPVAHLHLSCILLDLVSYHIKGGE-------TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226 (562)
T ss_dssp --------TTGGGTTSCEEEEEEEESSCCCCSSS-------CCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEE
T ss_pred --------chhhhhhceeeEEEeecccccccccC-------cccccccCcceEEEEecCccchhhhhhhcccccceEEEe
Confidence 011111 225555555543 1111 11111111 1114466666643 3444555677888888
Q ss_pred Eecccc-----cCC-CCCCCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccC
Q 003435 513 SLVDCT-----CQE-LPPLGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEF 586 (820)
Q Consensus 513 ~L~~n~-----~~~-l~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 586 (820)
++++|. +.. ++.+..+++|+.+++.++.+.... +.+.......++|++|++.++.--..+... .+
T Consensus 227 ~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~---~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~------~~ 297 (562)
T 3a79_B 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC---SVKLFQFFWPRPVEYLNIYNLTITERIDRE------EF 297 (562)
T ss_dssp EEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH---HHHHHHHHTTSSEEEEEEEEEEECSCCCCC------CC
T ss_pred cccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH---HHHHHHhhhcccccEEEEeccEeeccccch------hh
Confidence 888873 111 222566778888888776543211 000000112347888887765311111100 00
Q ss_pred CCCCCCCCcccEEEEcCCCCCCCCCC--------CCCcCceEecccCCccccccCCCCCcceEEccCCCCCccccccCCC
Q 003435 587 DGMQEPFPCLEKLVVEGCSMLNTLPF--------IRNLKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGN 658 (820)
Q Consensus 587 ~~~~~~~~~L~~L~l~~~~~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 658 (820)
......++.|+.+++..+.+ .+|. ..+|+.|++++|..........+++|++|++++|.+.+..|..+.+
T Consensus 298 ~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 375 (562)
T 3a79_B 298 TYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCST 375 (562)
T ss_dssp CCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCS
T ss_pred hcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcc
Confidence 00013566666666666655 4442 2568999999887544333478899999999999999888888999
Q ss_pred CCCccEEEEccCCCcc--chhhhcCCCCCcceEeeccCcccccCcc-ccCCCCcccEEEecCCCCCCccccccCCCCCcc
Q 003435 659 LNSLVKLTVNECDNLE--SLFVFMQSFSSLRHLSILHCDKLESLPM-SLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLL 735 (820)
Q Consensus 659 l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 735 (820)
+++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|++.+.+|..+. ++|+
T Consensus 376 l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~ 453 (562)
T 3a79_B 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVK 453 (562)
T ss_dssp CSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCS
T ss_pred cCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCC
Confidence 9999999999998776 4456788999999999999998775654 478899999999999998887776653 7899
Q ss_pred EEEeccCCCcccccccccCCCCcceEEEeCCchhhHHHhccccCCCcccccCCceeEecCceeeecc
Q 003435 736 ELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDPIAQMEVVSMTTLNLMADE 802 (820)
Q Consensus 736 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~l~l~~~n~~~~~ 802 (820)
+|++++|.+.. +|..+..+++|++|++++| ++.......+..+++|+.+++++ |.+.+.
T Consensus 454 ~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N------~l~~l~~~~~~~l~~L~~L~l~~-N~~~c~ 512 (562)
T 3a79_B 454 VLDLHNNRIMS-IPKDVTHLQALQELNVASN------QLKSVPDGVFDRLTSLQYIWLHD-NPWDCT 512 (562)
T ss_dssp EEECCSSCCCC-CCTTTTSSCCCSEEECCSS------CCCCCCTTSTTTCTTCCCEECCS-CCBCCC
T ss_pred EEECCCCcCcc-cChhhcCCCCCCEEECCCC------CCCCCCHHHHhcCCCCCEEEecC-CCcCCC
Confidence 99999998774 6666669999999999885 34444334488889999999999 766654
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.2e-34 Score=328.02 Aligned_cols=440 Identities=16% Similarity=0.123 Sum_probs=292.9
Q ss_pred eEEEeecc----CCCCcccCCCCccEEEeecccccccCcc-ccCCceeEEEEeCCCCCccc-CccccCcccccEEeccCc
Q 003435 264 RHCTLVGD----LSSSTIPRARKLRTLLFLTVKMENLSFP-CQEFQCLRVLDLGQSGIIKL-PDSIGTLKHLRYLDLSHT 337 (820)
Q Consensus 264 ~~l~l~~~----~~~~~~~~~~~L~~L~l~~n~~~~l~~~-~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n 337 (820)
+.+.+.++ +|.. + .+++++|++++|.+..++.. |..+++|++|+|++|.++.+ |..|.++++|++|+|++|
T Consensus 34 ~~l~ls~~~L~~ip~~-~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKD-L--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCSCCTT-S--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCccCCCC-C--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 45566555 2322 2 27999999999999999865 99999999999999999987 677999999999999999
Q ss_pred cccccccccccCCcccEEeccCCCCcc-ccchhccCCCCCcEEecCCCCCccccCcccCCCCCC--CccCceeeCC--cc
Q 003435 338 YIRKIPGSISKLKHLQTLDLSNCYNLE-ELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPL--RKLPAFILGK--QR 412 (820)
Q Consensus 338 ~i~~lp~~~~~L~~L~~L~L~~n~~~~-~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L--~~L~~~~~~~--~~ 412 (820)
.|+.+|.. .+++|++|++++|.+.+ .+|..|+++++|++|++++|.+.. ..+..+++| +.|++..+.. ..
T Consensus 111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~ 185 (562)
T 3a79_B 111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKG 185 (562)
T ss_dssp CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCS
T ss_pred cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccc
Confidence 99999876 89999999999988776 456789999999999999998655 345555566 8888877765 22
Q ss_pred c-cccccccc--cC--CCCCceeecccCCCCChhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcE
Q 003435 413 F-CAGLGELK--LL--DLRGRLEIKNLENLKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKV 487 (820)
Q Consensus 413 ~-~~~l~~L~--~L--~l~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 487 (820)
. +..+..+. .+ ++.++. + ........+..+.+|+.+++++|.. ...........+..+++|+.
T Consensus 186 ~~~~~l~~l~~~~l~l~l~~n~-------~--~~~~~~~~~~~l~~L~~L~l~~n~~---~~~~l~~~~~~l~~l~~L~~ 253 (562)
T 3a79_B 186 GETESLQIPNTTVLHLVFHPNS-------L--FSVQVNMSVNALGHLQLSNIKLNDE---NCQRLMTFLSELTRGPTLLN 253 (562)
T ss_dssp SSCCEEEECCEEEEEEEECSSS-------C--CCCCCEEEESSEEEEEEEEEECCST---THHHHHHHHHHHHSCSSCEE
T ss_pred cCcccccccCcceEEEEecCcc-------c--hhhhhhhcccccceEEEeccccccc---ccchHHHHHHHHhccCcceE
Confidence 1 12222222 11 111110 0 0011222345567788888877642 12233344455666777888
Q ss_pred EEEecCCCCC-----CCcccccCCCCccEEEecccccC-CCCC-C-----CCCCCCcceeeccCcCceEeCccccCCCcc
Q 003435 488 LDLKGYRGSV-----FPSWLNSGVPNLVKVSLVDCTCQ-ELPP-L-----GQLPNLKDLYVKGMSAVQIIGYKFYGNDAI 555 (820)
Q Consensus 488 L~L~~n~~~~-----~~~~~~~~l~~L~~L~L~~n~~~-~l~~-l-----~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~ 555 (820)
++++++.+.. ++... ..++|++|++++|.++ .+|. + +.++.|+.+++..+.+ .+.... +
T Consensus 254 L~L~~~~l~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~------~ 324 (562)
T 3a79_B 254 VTLQHIETTWKCSVKLFQFF--WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEA------L 324 (562)
T ss_dssp EEEEEEEECHHHHHHHHHHH--TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHH------H
T ss_pred EEecCCcCcHHHHHHHHHhh--hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhh------h
Confidence 8777665322 22222 2347888888888766 5555 3 3444444444443322 000000 0
Q ss_pred cCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCC--CCCCCcCceEecccC--Cccccc
Q 003435 556 RGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTL--PFIRNLKNLALCNSN--DKLVCS 631 (820)
Q Consensus 556 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~l~~L~~L~l~~~~--~~~~~~ 631 (820)
..+ + ..++|++|++++|.+.... ..+++|+.|++++|. ...+..
T Consensus 325 ~~~-------------------------------~-~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 372 (562)
T 3a79_B 325 YSV-------------------------------F-AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQG 372 (562)
T ss_dssp HHH-------------------------------H-HTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTT
T ss_pred hhh-------------------------------h-ccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhh
Confidence 000 0 0133555555555443322 234555555555555 223456
Q ss_pred cCCCCCcceEEccCCCCCc--cccccCCCCCCccEEEEccCCCccchhh-hcCCCCCcceEeeccCcccccCccccCCCC
Q 003435 632 LSRFPSLSSLVVDNFPELN--CLSDKTGNLNSLVKLTVNECDNLESLFV-FMQSFSSLRHLSILHCDKLESLPMSLEKFC 708 (820)
Q Consensus 632 ~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 708 (820)
+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+.+|..+. +
T Consensus 373 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~ 450 (562)
T 3a79_B 373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--P 450 (562)
T ss_dssp CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--T
T ss_pred hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--C
Confidence 7788888889998888776 3456788888899999998888775554 577888899999999888776665554 6
Q ss_pred cccEEEecCCCCCCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCc
Q 003435 709 SLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCP 767 (820)
Q Consensus 709 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 767 (820)
+|++|++++|++. .+|..+..+++|++|++++|++.+..+..+..+++|+.|++++|+
T Consensus 451 ~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp TCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred cCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 8889999988665 677666788899999999998886444448888889999888875
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.7e-34 Score=318.84 Aligned_cols=132 Identities=13% Similarity=0.045 Sum_probs=93.0
Q ss_pred CCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEe
Q 003435 636 PSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDI 715 (820)
Q Consensus 636 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L 715 (820)
++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 56777777777777666667777777777777777766666666777777777777777766666666777777777777
Q ss_pred cCCCCCCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCc
Q 003435 716 VECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCP 767 (820)
Q Consensus 716 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 767 (820)
++|++.+..|..+..+++|++|++++|++.+..+..+..+++|++|++++|+
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 7777766666667777777777777777766655666677777777776653
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.3e-34 Score=331.55 Aligned_cols=482 Identities=17% Similarity=0.153 Sum_probs=326.7
Q ss_pred CCceeEEEeecc----CCCCcccCCCCccEEEeecccccccCcc-ccCCceeEEEEeCCCCCcccCc-cccCcccccEEe
Q 003435 260 HTDIRHCTLVGD----LSSSTIPRARKLRTLLFLTVKMENLSFP-CQEFQCLRVLDLGQSGIIKLPD-SIGTLKHLRYLD 333 (820)
Q Consensus 260 ~~~~~~l~l~~~----~~~~~~~~~~~L~~L~l~~n~~~~l~~~-~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~ 333 (820)
...++.+.+.++ +++.+|.++++|++|++++|+++.+|.. |.++++|++|+|++|.++.+|. .|+++++|++|+
T Consensus 75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~ 154 (635)
T 4g8a_A 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 154 (635)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeec
Confidence 357899999887 4778899999999999999999999987 9999999999999999999875 599999999999
Q ss_pred ccCccccc--cccccccCCcccEEeccCCCCccccchhccCCCCCc----EEecCCCCCccccCcccCCCCCCCccCcee
Q 003435 334 LSHTYIRK--IPGSISKLKHLQTLDLSNCYNLEELPKGICQLTNLR----TLDISSCYSLTHMPLGIGKLRPLRKLPAFI 407 (820)
Q Consensus 334 Ls~n~i~~--lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~----~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~ 407 (820)
|++|.++. +|..++.+++|++|++++|.+.+..|..+..+.+++ .++++.|.+.. ++........+..+.+..
T Consensus 155 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~-i~~~~~~~~~~~~l~l~~ 233 (635)
T 4g8a_A 155 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRN 233 (635)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE-ECTTTTTTCEEEEEEEES
T ss_pred cccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccc-cCcccccchhhhhhhhhc
Confidence 99999985 478899999999999999998888887777665544 68888887544 444433334444454433
Q ss_pred eCCccc--cccccccccCCCCCceeecccCCCCChhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCC
Q 003435 408 LGKQRF--CAGLGELKLLDLRGRLEIKNLENLKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNL 485 (820)
Q Consensus 408 ~~~~~~--~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L 485 (820)
+..... ...+..+..+.+. ....................+.+...+....+..+....... .....+....++
T Consensus 234 n~~~~~~~~~~~~~l~~l~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~~~~~~~~~~l 308 (635)
T 4g8a_A 234 NFDSLNVMKTCIQGLAGLEVH-RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD----GIIDLFNCLTNV 308 (635)
T ss_dssp CCSSHHHHHHHHHTTTTCEEE-EEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEE----ECTTTTGGGTTC
T ss_pred ccccccccchhhcCCcccccc-cccccccccccccccccccccccccchhhhhhhhhhhccccc----chhhhhhhhccc
Confidence 321100 0011111111110 001111111111111222233333444444443332111100 111223334566
Q ss_pred cEEEEecCCCCCCCcccccCCCCccEEEecccccCCCCCCCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceee
Q 003435 486 KVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELPPLGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQ 565 (820)
Q Consensus 486 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~ 565 (820)
+.+.+.++.+..++... ....++.|++.+|.+..++. ..++.|+.+++..|...... ....+++|+.++
T Consensus 309 ~~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~-~~l~~L~~l~l~~n~~~~~~--------~~~~l~~L~~L~ 377 (635)
T 4g8a_A 309 SSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGGNAF--------SEVDLPSLEFLD 377 (635)
T ss_dssp SEEEEESCEEEECGGGG--SCCCCSEEEEESCEESSCCC-CBCTTCCEEEEESCCSCCBC--------CCCBCTTCCEEE
T ss_pred ccccccccccccccccc--cchhhhhhhcccccccCcCc-ccchhhhhcccccccCCCCc--------ccccccccccch
Confidence 66666666655544432 35567777777776655544 34556666666666543321 123456666666
Q ss_pred cCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCC---CCCCCCCcCceEecccC---CccccccCCCCCcc
Q 003435 566 LFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLN---TLPFIRNLKNLALCNSN---DKLVCSLSRFPSLS 639 (820)
Q Consensus 566 l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~l~~L~~L~l~~~~---~~~~~~~~~l~~L~ 639 (820)
++++.--. .. ..+.....+.+|+.+++..|.... .+..+++|+.+++..+. ......+..+++++
T Consensus 378 ls~n~l~~-~~--------~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 378 LSRNGLSF-KG--------CCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp CCSSCCBE-EE--------ECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred hhcccccc-cc--------ccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence 65542110 00 011111145567777777665433 23346677777777665 22334677889999
Q ss_pred eEEccCCCCCccccccCCCCCCccEEEEccCCCcc-chhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCC
Q 003435 640 SLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLE-SLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVEC 718 (820)
Q Consensus 640 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n 718 (820)
.++++.|.+....+..+..+++|+.|++++|.... ..|..+..+++|++|+|++|++.+..|..|.++++|++|+|++|
T Consensus 449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N 528 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528 (635)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC
Confidence 99999999999888899999999999999997655 35668899999999999999988888999999999999999999
Q ss_pred CCCCccccccCCCCCccEEEeccCCCcccccccccCC-CCcceEEEeCCc
Q 003435 719 PRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFL-GQLQRLVIKKCP 767 (820)
Q Consensus 719 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~~~ 767 (820)
++.+..|..|.++++|++|++++|++.+..|..+.++ ++|++|++++||
T Consensus 529 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 529 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 9988888889999999999999999999999999888 689999998764
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.3e-34 Score=316.50 Aligned_cols=362 Identities=14% Similarity=0.065 Sum_probs=226.5
Q ss_pred CCccEEEeecccccccCcc-ccCCceeEEEEeCCCCCc-cc-CccccCcccccEEeccCcccccc-ccccccCCcccEEe
Q 003435 281 RKLRTLLFLTVKMENLSFP-CQEFQCLRVLDLGQSGII-KL-PDSIGTLKHLRYLDLSHTYIRKI-PGSISKLKHLQTLD 356 (820)
Q Consensus 281 ~~L~~L~l~~n~~~~l~~~-~~~l~~L~~L~L~~n~l~-~l-p~~~~~l~~L~~L~Ls~n~i~~l-p~~~~~L~~L~~L~ 356 (820)
++|++|++++|.+..++.. |..+++|++|+|++|.+. .+ |..|.++++|++|+|++|.++.+ |..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 5677777777777666443 677777777777777665 44 34567777777777777777655 56677777777777
Q ss_pred ccCCCCccccchh--ccCCCCCcEEecCCCCCccccCcc-cCCCCCCCccCceeeCCccccccccccccCCCCCceeecc
Q 003435 357 LSNCYNLEELPKG--ICQLTNLRTLDISSCYSLTHMPLG-IGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKN 433 (820)
Q Consensus 357 L~~n~~~~~lp~~--~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 433 (820)
|++|.+.+.+|.. ++.+++|++|++++|.+.+..|.. +.++++|+.|++.
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~--------------------------- 162 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT--------------------------- 162 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT---------------------------
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC---------------------------
Confidence 7776666555444 666777777777777655554544 4555555554443
Q ss_pred cCCCCChhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccC--CCCccE
Q 003435 434 LENLKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSG--VPNLVK 511 (820)
Q Consensus 434 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~--l~~L~~ 511 (820)
+|.+..++...+.. ..+|+.
T Consensus 163 ----------------------------------------------------------~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 163 ----------------------------------------------------------FNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp ----------------------------------------------------------TCCBSCCCTTTSGGGTTCEEEE
T ss_pred ----------------------------------------------------------CCcccccChhhhhccccccccc
Confidence 33322222111111 123333
Q ss_pred EEecccccCCCCC----------CCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccC
Q 003435 512 VSLVDCTCQELPP----------LGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTE 581 (820)
Q Consensus 512 L~L~~n~~~~l~~----------l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 581 (820)
|++++|.+..++. +..+++|+.|++++|.+....+..+.. ....++|+.|.+.++....... ....
T Consensus 185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~-~~~~ 260 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD---AIAGTKIQSLILSNSYNMGSSF-GHTN 260 (455)
T ss_dssp EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH---HTTTCCEEEEECTTCTTTSCCT-TCCS
T ss_pred cccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc---cccccceeeEeecccccccccc-chhh
Confidence 3343333333322 112344444444444433222111100 0011334444443332111000 0000
Q ss_pred CCccCCCCCC--CCCcccEEEEcCCCCCCCCCCCCCcCceEecccCCccccccCCCCCcceEEccCCCCCccccccCCCC
Q 003435 582 GTDEFDGMQE--PFPCLEKLVVEGCSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNL 659 (820)
Q Consensus 582 ~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 659 (820)
........+. ..++|++|++++|.+.... +..+..+++|++|++++|.+.+..+..+.++
T Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 322 (455)
T 3v47_A 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALL------------------KSVFSHFTDLEQLTLAQNEINKIDDNAFWGL 322 (455)
T ss_dssp SCCCCTTTTGGGTTSCCCEEECCSSCCCEEC------------------TTTTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hccCcccccccccccCceEEEecCccccccc------------------hhhcccCCCCCEEECCCCcccccChhHhcCc
Confidence 0000000000 2345666666666554433 3367889999999999999999989999999
Q ss_pred CCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCCCccccccCCCCCccEEEe
Q 003435 660 NSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSI 739 (820)
Q Consensus 660 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 739 (820)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+..+..+..+++|++|++
T Consensus 323 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp TTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEc
Confidence 99999999999988887889999999999999999998888999999999999999999998877777899999999999
Q ss_pred ccCCCccccc
Q 003435 740 EGCPMLKLSL 749 (820)
Q Consensus 740 ~~n~~~~~~~ 749 (820)
++|++.+..|
T Consensus 403 ~~N~l~~~~~ 412 (455)
T 3v47_A 403 HTNPWDCSCP 412 (455)
T ss_dssp CSSCBCCCTT
T ss_pred cCCCcccCCC
Confidence 9999887655
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.6e-33 Score=308.01 Aligned_cols=344 Identities=17% Similarity=0.200 Sum_probs=230.1
Q ss_pred CCCCccEEEeecccccccCccccCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEEecc
Q 003435 279 RARKLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLS 358 (820)
Q Consensus 279 ~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~ 358 (820)
.+++++.|++.++.+..++. +..+++|++|+|++|.+..+|. +.++++|++|++++|.++.++. ++++++|++|+++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred HhccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECC
Confidence 46788888888888888764 7778889999999998888876 8888999999999998888876 8889999999998
Q ss_pred CCCCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCCCC
Q 003435 359 NCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLK 438 (820)
Q Consensus 359 ~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~ 438 (820)
+|.+.+. |. ++.+++|++|++++|.+.. +| .+..+++|+.|++.. ....
T Consensus 121 ~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~~-------------------------- 169 (466)
T 1o6v_A 121 NNQITDI-DP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVTD-------------------------- 169 (466)
T ss_dssp SSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCCC--------------------------
T ss_pred CCCCCCC-hH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-cccC--------------------------
Confidence 8765544 43 8888999999998886433 33 366666666664321 0000
Q ss_pred ChhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEecccc
Q 003435 439 NVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCT 518 (820)
Q Consensus 439 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 518 (820)
...+..+++|+.|++++|.+..++. +..+++|++|++++|.
T Consensus 170 -------------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 210 (466)
T 1o6v_A 170 -------------------------------------LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQ 210 (466)
T ss_dssp -------------------------------------CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSC
T ss_pred -------------------------------------chhhccCCCCCEEECcCCcCCCChh--hccCCCCCEEEecCCc
Confidence 0113445567777777777666543 2456777777777777
Q ss_pred cCCCCCCCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccE
Q 003435 519 CQELPPLGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEK 598 (820)
Q Consensus 519 ~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 598 (820)
++.+++++.+++|+.|++++|.+... ..+..+ ++|++
T Consensus 211 l~~~~~~~~l~~L~~L~l~~n~l~~~--------~~l~~l-----------------------------------~~L~~ 247 (466)
T 1o6v_A 211 ISDITPLGILTNLDELSLNGNQLKDI--------GTLASL-----------------------------------TNLTD 247 (466)
T ss_dssp CCCCGGGGGCTTCCEEECCSSCCCCC--------GGGGGC-----------------------------------TTCSE
T ss_pred ccccccccccCCCCEEECCCCCcccc--------hhhhcC-----------------------------------CCCCE
Confidence 66666666677777777777654432 112233 34444
Q ss_pred EEEcCCCCCCCC--CCCCCcCceEecccCCccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccch
Q 003435 599 LVVEGCSMLNTL--PFIRNLKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESL 676 (820)
Q Consensus 599 L~l~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 676 (820)
|++++|.+.... ..+++|+.|++++|.......+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..
T Consensus 248 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~ 325 (466)
T 1o6v_A 248 LDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 325 (466)
T ss_dssp EECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCG
T ss_pred EECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCch
Confidence 444444332211 1233444444444432222236667778888888887766544 667778888888888776655
Q ss_pred hhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCcc
Q 003435 677 FVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLK 746 (820)
Q Consensus 677 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 746 (820)
+ +..+++|++|++++|.+.+. ..+..+++|+.|++++|++.+..| +..+++|+.|++++|++.+
T Consensus 326 ~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 326 P--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp G--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred h--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 4 56778888888888875543 367777888888888887776666 6777888888888887666
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.5e-33 Score=304.88 Aligned_cols=357 Identities=15% Similarity=0.128 Sum_probs=234.3
Q ss_pred cccCCCCccEEEeecccccccCccccCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEE
Q 003435 276 TIPRARKLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTL 355 (820)
Q Consensus 276 ~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L 355 (820)
.+..+++|++|++++|.+..+| .+..+++|++|+|++|.++.+| ++.+++|++|++++|.++.+| ++++++|++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred ChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 3567889999999999988886 6888899999999999998875 888999999999999998886 8889999999
Q ss_pred eccCCCCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccC
Q 003435 356 DLSNCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLE 435 (820)
Q Consensus 356 ~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~ 435 (820)
++++|.+.+ +| ++.+++|++|++++|.+.+ ++ ++++++|+.|++..+.. +..+
T Consensus 112 ~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~--------------------~~~~- 164 (457)
T 3bz5_A 112 NCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKK--------------------ITKL- 164 (457)
T ss_dssp ECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSC--------------------CCCC-
T ss_pred ECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCc--------------------cccc-
Confidence 999987665 44 8889999999999987554 32 55555555553322210 0000
Q ss_pred CCCChhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEec
Q 003435 436 NLKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLV 515 (820)
Q Consensus 436 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 515 (820)
.+..+++|+.|++++|.++.+| +..+++|+.|+++
T Consensus 165 ------------------------------------------~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~ 199 (457)
T 3bz5_A 165 ------------------------------------------DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCD 199 (457)
T ss_dssp ------------------------------------------CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECC
T ss_pred ------------------------------------------ccccCCcCCEEECCCCccceec---cccCCCCCEEECc
Confidence 1233456666666666666655 2356666666666
Q ss_pred ccccCCCCCCCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCc
Q 003435 516 DCTCQELPPLGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPC 595 (820)
Q Consensus 516 ~n~~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 595 (820)
+|.++.+ +++.+++|+.|++++|++..+. +. .+++
T Consensus 200 ~N~l~~~-~l~~l~~L~~L~Ls~N~l~~ip---------~~-----------------------------------~l~~ 234 (457)
T 3bz5_A 200 TNNITKL-DLNQNIQLTFLDCSSNKLTEID---------VT-----------------------------------PLTQ 234 (457)
T ss_dssp SSCCSCC-CCTTCTTCSEEECCSSCCSCCC---------CT-----------------------------------TCTT
T ss_pred CCcCCee-ccccCCCCCEEECcCCcccccC---------cc-----------------------------------ccCC
Confidence 6666665 3566666666666666544310 11 3455
Q ss_pred ccEEEEcCCCCCCCCC-CCCCcCceEecccCCccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCcc
Q 003435 596 LEKLVVEGCSMLNTLP-FIRNLKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLE 674 (820)
Q Consensus 596 L~~L~l~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 674 (820)
|++|++++|.+.+..+ .+++|+.|+++.+ +|+.|++++|...+.+| ++.+++|+.|++++|...+
T Consensus 235 L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~ 300 (457)
T 3bz5_A 235 LTYFDCSVNPLTELDVSTLSKLTTLHCIQT------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLY 300 (457)
T ss_dssp CSEEECCSSCCSCCCCTTCTTCCEEECTTC------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCC
T ss_pred CCEEEeeCCcCCCcCHHHCCCCCEEeccCC------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccc
Confidence 5555555555444222 2455555554332 46677777777766665 4567777777777777776
Q ss_pred chhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCcccccccccC
Q 003435 675 SLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEF 754 (820)
Q Consensus 675 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 754 (820)
.+|. ..++|+.|++++| ++|++|++++|++.+. + ++.+++|+.|++++|++.+
T Consensus 301 ~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-------- 353 (457)
T 3bz5_A 301 LLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD-------- 353 (457)
T ss_dssp EEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------
T ss_pred eecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------
Confidence 6653 3455666655554 4677788888777663 3 6777788888888887665
Q ss_pred CCCcceEEEeCCchhhHHHhccccCCCcccccCCceeEecCceeeeccCCCcc
Q 003435 755 LGQLQRLVIKKCPQLERQRLMNALHESFDPIAQMEVVSMTTLNLMADEVPTET 807 (820)
Q Consensus 755 l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~l~l~~~n~~~~~~~~~~ 807 (820)
++.|..|++++ |.+.+. +.+..++.+++++ |.++|.+|..+
T Consensus 354 l~~L~~L~l~~------n~l~g~-----~~~~~l~~l~l~~-N~l~g~ip~~~ 394 (457)
T 3bz5_A 354 FSSVGKIPALN------NNFEAE-----GQTITMPKETLTN-NSLTIAVSPDL 394 (457)
T ss_dssp CTTGGGSSGGG------TSEEEE-----EEEEECCCBCCBT-TBEEEECCTTC
T ss_pred ccccccccccC------CcEEec-----ceeeecCcccccc-CcEEEEcChhH
Confidence 23455553332 333332 3455677777777 77777777654
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.6e-32 Score=302.75 Aligned_cols=342 Identities=18% Similarity=0.212 Sum_probs=261.0
Q ss_pred cCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEEeccCCCCccccchhccCCCCCcEEe
Q 003435 301 QEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLD 380 (820)
Q Consensus 301 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~ 380 (820)
..+++++.|+++++.+..+|. +..+++|++|+|++|.++.+|. ++++++|++|++++|.+.+..| ++++++|++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hHhccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 346789999999999999875 8899999999999999999987 9999999999999987665544 99999999999
Q ss_pred cCCCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCCCCChhhhhhhccccccccceeeEE
Q 003435 381 ISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLKNVVDAEEAKLHDKVHIRSLGLS 460 (820)
Q Consensus 381 L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 460 (820)
+++|.+.+. |. +.++++|++|++..+.....
T Consensus 119 L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~----------------------------------------------- 149 (466)
T 1o6v_A 119 LFNNQITDI-DP-LKNLTNLNRLELSSNTISDI----------------------------------------------- 149 (466)
T ss_dssp CCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC-----------------------------------------------
T ss_pred CCCCCCCCC-hH-HcCCCCCCEEECCCCccCCC-----------------------------------------------
Confidence 999975443 32 66666666665544322110
Q ss_pred eccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEecccccCCCCCCCCCCCCcceeeccCc
Q 003435 461 WSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELPPLGQLPNLKDLYVKGMS 540 (820)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~l~~l~~L~~L~L~~n~ 540 (820)
..+..+++|+.|++++ ....++. +..+++|+.|++++|.++.++.+..+++|+.|++++|.
T Consensus 150 ----------------~~~~~l~~L~~L~l~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~ 210 (466)
T 1o6v_A 150 ----------------SALSGLTSLQQLSFGN-QVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ 210 (466)
T ss_dssp ----------------GGGTTCTTCSEEEEEE-SCCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred ----------------hhhccCCcccEeecCC-cccCchh--hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCc
Confidence 0133455677777753 3333333 34677777777777777776667777777777777765
Q ss_pred CceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCC--CCCCCCCcCc
Q 003435 541 AVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLN--TLPFIRNLKN 618 (820)
Q Consensus 541 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~l~~L~~ 618 (820)
+....+ +..+++|+.|++++|.+.. .+..+++|+.
T Consensus 211 l~~~~~-------------------------------------------~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~ 247 (466)
T 1o6v_A 211 ISDITP-------------------------------------------LGILTNLDELSLNGNQLKDIGTLASLTNLTD 247 (466)
T ss_dssp CCCCGG-------------------------------------------GGGCTTCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred cccccc-------------------------------------------ccccCCCCEEECCCCCcccchhhhcCCCCCE
Confidence 433210 1145677777777776543 2334788999
Q ss_pred eEecccCCccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccc
Q 003435 619 LALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLE 698 (820)
Q Consensus 619 L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 698 (820)
|++++|.......+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+
T Consensus 248 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 248 LDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp EECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSC
T ss_pred EECCCCccccchhhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCC
Confidence 99999985555558889999999999999887655 7889999999999998776544 7789999999999998776
Q ss_pred cCccccCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCc
Q 003435 699 SLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCP 767 (820)
Q Consensus 699 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 767 (820)
..| +..+++|++|++++|++.+. ..+..+++|+.|++++|++.+..| +..+++|+.|++++|+
T Consensus 324 ~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 324 ISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred chh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 655 77899999999999987765 468889999999999999988776 8889999999998874
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=8.8e-33 Score=301.40 Aligned_cols=367 Identities=19% Similarity=0.162 Sum_probs=206.7
Q ss_pred CCCccEEEeecccccccCccccCCceeEEEEeCCCCCc-ccCccccCcccc-------------cEEeccCccccccccc
Q 003435 280 ARKLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGII-KLPDSIGTLKHL-------------RYLDLSHTYIRKIPGS 345 (820)
Q Consensus 280 ~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L-------------~~L~Ls~n~i~~lp~~ 345 (820)
.++|++|++++|.+..+|..+..+++|++|++++|.+. .+|..++++++| ++|++++|.++.+|..
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~ 89 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence 45566666666666666655666666666666666655 456556655554 5555555555555441
Q ss_pred cccCCcccEEeccCCCCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCC
Q 003435 346 ISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDL 425 (820)
Q Consensus 346 ~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l 425 (820)
.++|++|++++|.+.+ +|.. +++|++|++++|.+.+ +|.. .
T Consensus 90 ---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~-----------------------~-------- 130 (454)
T 1jl5_A 90 ---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL-----------------------P-------- 130 (454)
T ss_dssp ---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC-----------------------C--------
T ss_pred ---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC-----------------------C--------
Confidence 2455555555544433 4432 2455555555554221 1110 0
Q ss_pred CCceeecccCCCCChhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccC
Q 003435 426 RGRLEIKNLENLKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSG 505 (820)
Q Consensus 426 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~ 505 (820)
..|+.|++++|.... ++ .+..+++|++|++++|.++.+|..
T Consensus 131 --------------------------~~L~~L~L~~n~l~~--------lp-~~~~l~~L~~L~l~~N~l~~lp~~---- 171 (454)
T 1jl5_A 131 --------------------------PLLEYLGVSNNQLEK--------LP-ELQNSSFLKIIDVDNNSLKKLPDL---- 171 (454)
T ss_dssp --------------------------TTCCEEECCSSCCSS--------CC-CCTTCTTCCEEECCSSCCSCCCCC----
T ss_pred --------------------------CCCCEEECcCCCCCC--------Cc-ccCCCCCCCEEECCCCcCcccCCC----
Confidence 123333333333221 11 255667788888888887777654
Q ss_pred CCCccEEEecccccCCCCCCCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCcc
Q 003435 506 VPNLVKVSLVDCTCQELPPLGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDE 585 (820)
Q Consensus 506 l~~L~~L~L~~n~~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 585 (820)
.++|++|++++|.++.+|.++.+++|+.|++++|.+.++. ...++|++|++.++ .+..
T Consensus 172 ~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~----------~~~~~L~~L~l~~n-~l~~----------- 229 (454)
T 1jl5_A 172 PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLP----------DLPLSLESIVAGNN-ILEE----------- 229 (454)
T ss_dssp CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC----------CCCTTCCEEECCSS-CCSS-----------
T ss_pred cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCC----------CCcCcccEEECcCC-cCCc-----------
Confidence 3578888888888888877888888888888888765432 12347777777765 2222
Q ss_pred CCCCCCCCCcccEEEEcCCCCCCCCCCCCCcCceEecccCCccccccCCCCCcceEEccCCCCCccccccCCCCCCccEE
Q 003435 586 FDGMQEPFPCLEKLVVEGCSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKL 665 (820)
Q Consensus 586 ~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 665 (820)
++. +..+++|++|++++|.+.+..+..++|+.|++++|....... .+++|++|++++|.+.+. +. ..++|+.|
T Consensus 230 lp~-~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~--~~~~L~~L~ls~N~l~~l-~~---~~~~L~~L 302 (454)
T 1jl5_A 230 LPE-LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPE--LPQSLTFLDVSENIFSGL-SE---LPPNLYYL 302 (454)
T ss_dssp CCC-CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSEE-SC---CCTTCCEE
T ss_pred ccc-cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCc--ccCcCCEEECcCCccCcc-cC---cCCcCCEE
Confidence 221 346788888888888765522235788888888887332222 247888888888887662 21 12688888
Q ss_pred EEccCCCccchhhhcCCC-CCcceEeeccCcccccCccccCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCC
Q 003435 666 TVNECDNLESLFVFMQSF-SSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPM 744 (820)
Q Consensus 666 ~L~~n~~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 744 (820)
++++|.+.+ ++ .+ ++|++|++++|.+.+ +|.. +++|++|++++|.+. .+|. .+++|++|++++|++
T Consensus 303 ~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 303 NASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPL 369 (454)
T ss_dssp ECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCC
T ss_pred ECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCC
Confidence 888887665 22 23 588888888887665 5543 578888888888766 4665 378888899988888
Q ss_pred cc--cccccccCC-------------CCcceEEEeCC
Q 003435 745 LK--LSLKSIEFL-------------GQLQRLVIKKC 766 (820)
Q Consensus 745 ~~--~~~~~~~~l-------------~~L~~L~l~~~ 766 (820)
.+ .+|..+..+ ++|++|++++|
T Consensus 370 ~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N 406 (454)
T 1jl5_A 370 REFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN 406 (454)
T ss_dssp SSCCCCCTTCCEEECCC--------------------
T ss_pred CcCCCChHHHHhhhhcccccccccccCcCCEEECCCC
Confidence 87 566666655 56666666654
No 31
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.1e-32 Score=298.33 Aligned_cols=391 Identities=18% Similarity=0.128 Sum_probs=218.0
Q ss_pred eeEEEeecc---CCCCcccCCCCccEEEeeccccc-ccCccccCCcee-------------EEEEeCCCCCcccCccccC
Q 003435 263 IRHCTLVGD---LSSSTIPRARKLRTLLFLTVKME-NLSFPCQEFQCL-------------RVLDLGQSGIIKLPDSIGT 325 (820)
Q Consensus 263 ~~~l~l~~~---~~~~~~~~~~~L~~L~l~~n~~~-~l~~~~~~l~~L-------------~~L~L~~n~l~~lp~~~~~ 325 (820)
++.+.+.++ .-+.++.++++|++|++++|.+. .+|..+..+++| ++|++++|+++.+|..
T Consensus 13 L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~--- 89 (454)
T 1jl5_A 13 LQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL--- 89 (454)
T ss_dssp ---------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC---
T ss_pred chhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC---
Confidence 444444444 12345889999999999999887 577778888775 9999999999998873
Q ss_pred cccccEEeccCccccccccccccCCcccEEeccCCCCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCc
Q 003435 326 LKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPA 405 (820)
Q Consensus 326 l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~ 405 (820)
.++|++|++++|.++.+|.. +++|++|++++|.+.+ +|.. .++|++|++++|.+.+ +| .++++++|++|++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDV 160 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence 37899999999999999864 4899999999987654 4431 2799999999998665 77 6999999999887
Q ss_pred eeeCCccccccccccccCCCCCceeecccCCCCChhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCC
Q 003435 406 FILGKQRFCAGLGELKLLDLRGRLEIKNLENLKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNL 485 (820)
Q Consensus 406 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L 485 (820)
..+.+...+.... .|+.|++++|....+ + .+..+++|
T Consensus 161 ~~N~l~~lp~~~~----------------------------------~L~~L~L~~n~l~~l--------~-~~~~l~~L 197 (454)
T 1jl5_A 161 DNNSLKKLPDLPP----------------------------------SLEFIAAGNNQLEEL--------P-ELQNLPFL 197 (454)
T ss_dssp CSSCCSCCCCCCT----------------------------------TCCEEECCSSCCSSC--------C-CCTTCTTC
T ss_pred CCCcCcccCCCcc----------------------------------cccEEECcCCcCCcC--------c-cccCCCCC
Confidence 7665543332222 444555554443221 1 25566778
Q ss_pred cEEEEecCCCCCCCcccccCCCCccEEEecccccCCCCCCCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceee
Q 003435 486 KVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELPPLGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQ 565 (820)
Q Consensus 486 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~ 565 (820)
+.|++++|.+..+|.. .++|++|++++|.++.+|.++.+++|+.|++++|.+..+. ..+++|+.|+
T Consensus 198 ~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~----------~~~~~L~~L~ 263 (454)
T 1jl5_A 198 TAIYADNNSLKKLPDL----PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP----------DLPPSLEALN 263 (454)
T ss_dssp CEEECCSSCCSSCCCC----CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC----------SCCTTCCEEE
T ss_pred CEEECCCCcCCcCCCC----cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCccc----------ccccccCEEE
Confidence 8888888877776653 3578888888887777777788888888888887665432 1235666666
Q ss_pred cCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCC-CCCcCceEecccCCccccccCCC-CCcceEEc
Q 003435 566 LFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPF-IRNLKNLALCNSNDKLVCSLSRF-PSLSSLVV 643 (820)
Q Consensus 566 l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~l-~~L~~L~l 643 (820)
+.++. +..+ +. .+++|++|++++|.+.+ +|. .++|+.|++++|..... ..+ ++|++|++
T Consensus 264 l~~N~-l~~l-----------~~---~~~~L~~L~ls~N~l~~-l~~~~~~L~~L~l~~N~l~~i---~~~~~~L~~L~L 324 (454)
T 1jl5_A 264 VRDNY-LTDL-----------PE---LPQSLTFLDVSENIFSG-LSELPPNLYYLNASSNEIRSL---CDLPPSLEELNV 324 (454)
T ss_dssp CCSSC-CSCC-----------CC---CCTTCCEEECCSSCCSE-ESCCCTTCCEEECCSSCCSEE---CCCCTTCCEEEC
T ss_pred CCCCc-cccc-----------Cc---ccCcCCEEECcCCccCc-ccCcCCcCCEEECcCCcCCcc---cCCcCcCCEEEC
Confidence 66542 1111 11 23567777777776544 211 24566666666653221 122 35666666
Q ss_pred cCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccc--cCccccCCCCcccEEEecCCCCC
Q 003435 644 DNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLE--SLPMSLEKFCSLQKLDIVECPRL 721 (820)
Q Consensus 644 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~L~~n~~~ 721 (820)
++|.+.+ +|.. +++|++|++++|.+.. +|. .+++|++|++++|++.+ .+|..+.. ++.|...
T Consensus 325 s~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~ 388 (454)
T 1jl5_A 325 SNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHL 388 (454)
T ss_dssp CSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC--
T ss_pred CCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccc
Confidence 6666554 3322 4566666666665442 333 35566666666666555 44433322 2234445
Q ss_pred CccccccCCCCCccEEEeccCCCcc--cccccccCCCCcceEEEeCC
Q 003435 722 VHIPDIMGQHSSLLELSIEGCPMLK--LSLKSIEFLGQLQRLVIKKC 766 (820)
Q Consensus 722 ~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~~ 766 (820)
+.+|.. +++|++|++++|++.+ .+| ++|+.|.+.+|
T Consensus 389 ~~i~~~---~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~ 426 (454)
T 1jl5_A 389 AEVPEL---PQNLKQLHVETNPLREFPDIP------ESVEDLRMNSE 426 (454)
T ss_dssp -----------------------------------------------
T ss_pred cccccc---cCcCCEEECCCCcCCccccch------hhHhheeCcCc
Confidence 555542 4889999999999887 455 34566666654
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.98 E-value=2.7e-31 Score=294.69 Aligned_cols=317 Identities=18% Similarity=0.143 Sum_probs=179.3
Q ss_pred cEEEeecccccccCccccCCceeEEEEeCCCCCccc-CccccCcccccEEeccCcccccc-ccccccCCcccEEeccCCC
Q 003435 284 RTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKL-PDSIGTLKHLRYLDLSHTYIRKI-PGSISKLKHLQTLDLSNCY 361 (820)
Q Consensus 284 ~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~l-p~~~~~L~~L~~L~L~~n~ 361 (820)
+.++.+++.+..+|..+. +++++|+|++|.++.+ |..|.++++|++|+|++|.++.+ |..|.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 355666666677766543 4677777777777766 35677777777777777777766 5677777777777777766
Q ss_pred CccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCCCCChh
Q 003435 362 NLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLKNVV 441 (820)
Q Consensus 362 ~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~ 441 (820)
+....+..|+++++|++|++++|.+.+..|..|..+++|+.|++..+.+....
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------------- 144 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS--------------------------- 144 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEEC---------------------------
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeC---------------------------
Confidence 55444445677777777777777655554544544444443332221110000
Q ss_pred hhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEecccccCC
Q 003435 442 DAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQE 521 (820)
Q Consensus 442 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 521 (820)
+..+..+++|+.|++++|.++.++...+..+++|+.|++++|.+..
T Consensus 145 ----------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 145 ----------------------------------HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp ----------------------------------TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred ----------------------------------hhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 0112233455555555555555554444445555555555554444
Q ss_pred CCC--CCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEE
Q 003435 522 LPP--LGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKL 599 (820)
Q Consensus 522 l~~--l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L 599 (820)
++. +..+++|+.|++++|...... . .......+|++|
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~------------------------------~-----------~~~~~~~~L~~L 229 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTM------------------------------T-----------PNCLYGLNLTSL 229 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEE------------------------------C-----------TTTTTTCCCSEE
T ss_pred eChhhcccCcccceeeCCCCcccccc------------------------------C-----------cccccCccccEE
Confidence 333 444444444444443322111 0 000022345555
Q ss_pred EEcCCCCCCCCCCCCCcCceEecccCCccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhh
Q 003435 600 VVEGCSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVF 679 (820)
Q Consensus 600 ~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 679 (820)
++++|.+.. +| ...+..+++|+.|++++|.+.+..+..+..+++|+.|+|++|.+.+..+..
T Consensus 230 ~l~~n~l~~-~~-----------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 291 (477)
T 2id5_A 230 SITHCNLTA-VP-----------------YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA 291 (477)
T ss_dssp EEESSCCCS-CC-----------------HHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTT
T ss_pred ECcCCcccc-cC-----------------HHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHH
Confidence 555553321 11 113556667777777777766666666667777777777777666666666
Q ss_pred cCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCCC
Q 003435 680 MQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLV 722 (820)
Q Consensus 680 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~ 722 (820)
+..+++|++|++++|.+.+..+..|..+++|++|++++|++..
T Consensus 292 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 292 FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp BTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred hcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 6677777777777776655555556666777777777776543
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.98 E-value=4.3e-31 Score=293.06 Aligned_cols=319 Identities=18% Similarity=0.141 Sum_probs=239.6
Q ss_pred eEEEEeCCCCCcccCccccCcccccEEeccCcccccc-ccccccCCcccEEeccCCCCccccchhccCCCCCcEEecCCC
Q 003435 306 LRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKI-PGSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISSC 384 (820)
Q Consensus 306 L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n 384 (820)
-+.++.++++++.+|..+. +++++|+|++|.|+.+ |..|.++++|++|+|++|.+.+..|..|+++++|++|+|++|
T Consensus 13 ~~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TTEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 3578899999999998764 6899999999999988 578999999999999999888888999999999999999999
Q ss_pred CCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCCCCChhhhhhhccccccccceeeEEeccC
Q 003435 385 YSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLKNVVDAEEAKLHDKVHIRSLGLSWSRN 464 (820)
Q Consensus 385 ~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 464 (820)
.+....+..|.++++|+.|++..+.+...
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~--------------------------------------------------- 119 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVIL--------------------------------------------------- 119 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEE---------------------------------------------------
T ss_pred cCCccCcccccCCCCCCEEECCCCccccC---------------------------------------------------
Confidence 85544444566666666665433322110
Q ss_pred CccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEecccccCCCCC--CCCCCCCcceeeccCcCc
Q 003435 465 AQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELPP--LGQLPNLKDLYVKGMSAV 542 (820)
Q Consensus 465 ~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~--l~~l~~L~~L~L~~n~~~ 542 (820)
.+..+..+++|+.|++++|.+..++...+..+++|+.|++++|.++.++. +..+++|+.|++++|.+.
T Consensus 120 ----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 120 ----------LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp ----------CTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred ----------ChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 01224445677777777777766665555667777777777777777665 667777777777776554
Q ss_pred eEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCCCCCcCceEec
Q 003435 543 QIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPFIRNLKNLALC 622 (820)
Q Consensus 543 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~ 622 (820)
.+.. ..+..+++|+.|++++|.....+|.
T Consensus 190 ~~~~-----------------------------------------~~~~~l~~L~~L~l~~~~~~~~~~~---------- 218 (477)
T 2id5_A 190 AIRD-----------------------------------------YSFKRLYRLKVLEISHWPYLDTMTP---------- 218 (477)
T ss_dssp EECT-----------------------------------------TCSCSCTTCCEEEEECCTTCCEECT----------
T ss_pred EeCh-----------------------------------------hhcccCcccceeeCCCCccccccCc----------
Confidence 4321 1222566777778877766654442
Q ss_pred ccCCccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCcc
Q 003435 623 NSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPM 702 (820)
Q Consensus 623 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 702 (820)
......+|++|++++|.+....+..+..+++|+.|+|++|.+.+..+..+..+++|++|++++|.+.+..|.
T Consensus 219 --------~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 290 (477)
T 2id5_A 219 --------NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290 (477)
T ss_dssp --------TTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT
T ss_pred --------ccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH
Confidence 223345788888988888766666788888999999998887777667788888999999999888887788
Q ss_pred ccCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCcc
Q 003435 703 SLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLK 746 (820)
Q Consensus 703 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 746 (820)
.+..+++|++|+|++|.+.+..+..|..+++|++|++++|++..
T Consensus 291 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 291 AFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp TBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred HhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 88888899999999988877777778888889999999888765
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=3.3e-31 Score=289.23 Aligned_cols=218 Identities=14% Similarity=0.139 Sum_probs=164.0
Q ss_pred CceeEEEeecc-C-CCCcccCCCCccEEEeecccccccCccccCCceeEEEEeCCCCCcccCccccCcccccEEeccCcc
Q 003435 261 TDIRHCTLVGD-L-SSSTIPRARKLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTY 338 (820)
Q Consensus 261 ~~~~~l~l~~~-~-~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~ 338 (820)
..++.+.+.++ + ..+.+..+++|++|++++|.+..++ +..+++|++|++++|.++.+| ++.+++|++|++++|.
T Consensus 42 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~ 117 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNK 117 (457)
T ss_dssp TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSC
T ss_pred CCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCc
Confidence 45677777776 2 2236889999999999999999985 789999999999999999885 8999999999999999
Q ss_pred ccccccccccCCcccEEeccCCCCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCcccccccc
Q 003435 339 IRKIPGSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLG 418 (820)
Q Consensus 339 i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~ 418 (820)
++.+| ++.+++|++|++++|.+.+ ++ ++.+++|++|++++|...+.+ .+..+++|+.|++..+.+...+
T Consensus 118 l~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~---- 186 (457)
T 3bz5_A 118 LTKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD---- 186 (457)
T ss_dssp CSCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC----
T ss_pred CCeec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec----
Confidence 99987 8999999999999988776 43 889999999999999766666 4667777777755443221100
Q ss_pred ccccCCCCCceeecccCCCCChhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCC
Q 003435 419 ELKLLDLRGRLEIKNLENLKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVF 498 (820)
Q Consensus 419 ~L~~L~l~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~ 498 (820)
+..+++|+.|++++|.++.+
T Consensus 187 ------------------------------------------------------------l~~l~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 187 ------------------------------------------------------------VSQNKLLNRLNCDTNNITKL 206 (457)
T ss_dssp ------------------------------------------------------------CTTCTTCCEEECCSSCCSCC
T ss_pred ------------------------------------------------------------cccCCCCCEEECcCCcCCee
Confidence 22345667777777776665
Q ss_pred CcccccCCCCccEEEecccccCCCCCCCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeec
Q 003435 499 PSWLNSGVPNLVKVSLVDCTCQELPPLGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQL 566 (820)
Q Consensus 499 ~~~~~~~l~~L~~L~L~~n~~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l 566 (820)
+ +..+++|+.|++++|.++++| ++.+++|+.|++++|.+.... .+.+++|+.|.+
T Consensus 207 ~---l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~---------~~~l~~L~~L~l 261 (457)
T 3bz5_A 207 D---LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELD---------VSTLSKLTTLHC 261 (457)
T ss_dssp C---CTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---------CTTCTTCCEEEC
T ss_pred c---cccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcC---------HHHCCCCCEEec
Confidence 3 245677777777777777766 677777777777777665432 234555555554
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=7.4e-31 Score=278.34 Aligned_cols=104 Identities=17% Similarity=0.263 Sum_probs=69.6
Q ss_pred ccCCCCccEEEeecccccccCccccCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEEe
Q 003435 277 IPRARKLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLD 356 (820)
Q Consensus 277 ~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~ 356 (820)
+..+++|+.|+++++.+..++. +..+++|++|++++|.++.+|. +..+++|++|++++|.++.+| .+..+++|++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred chhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEE
Confidence 3456677777777777766643 6667777777777777776655 667777777777777777665 467777777777
Q ss_pred ccCCCCccccchhccCCCCCcEEecCCCC
Q 003435 357 LSNCYNLEELPKGICQLTNLRTLDISSCY 385 (820)
Q Consensus 357 L~~n~~~~~lp~~~~~l~~L~~L~L~~n~ 385 (820)
+++|.+.+ +|. +..+++|++|++++|.
T Consensus 117 l~~n~i~~-~~~-~~~l~~L~~L~l~~n~ 143 (347)
T 4fmz_A 117 LNEDNISD-ISP-LANLTKMYSLNLGANH 143 (347)
T ss_dssp CTTSCCCC-CGG-GTTCTTCCEEECTTCT
T ss_pred CcCCcccC-chh-hccCCceeEEECCCCC
Confidence 77755443 333 6667777777777664
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=3e-30 Score=278.06 Aligned_cols=308 Identities=16% Similarity=0.131 Sum_probs=176.8
Q ss_pred CCCCccEEEeecccccccCcc-ccCCceeEEEEeCCCCCcccC-ccccCcccccEEeccCcccccc-ccccccCCcccEE
Q 003435 279 RARKLRTLLFLTVKMENLSFP-CQEFQCLRVLDLGQSGIIKLP-DSIGTLKHLRYLDLSHTYIRKI-PGSISKLKHLQTL 355 (820)
Q Consensus 279 ~~~~L~~L~l~~n~~~~l~~~-~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~l-p~~~~~L~~L~~L 355 (820)
.+++++.|++.++.+..+|.. |..+++|++|++++|.+..++ ..|..+++|++|+|++|.++.+ |..|+++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 456777777777777777766 666777777777777777664 3677777777777777777766 3456777777777
Q ss_pred eccCCCCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccC
Q 003435 356 DLSNCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLE 435 (820)
Q Consensus 356 ~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~ 435 (820)
++++|.+....+..++++++|++|++++|.+.+..|..+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---------------------------------------- 162 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ---------------------------------------- 162 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTS----------------------------------------
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhcc----------------------------------------
Confidence 7777654433223356677777777777654332222222
Q ss_pred CCCChhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEec
Q 003435 436 NLKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLV 515 (820)
Q Consensus 436 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 515 (820)
.+++|+.|++++|.++.++. ..+++|+.|+++
T Consensus 163 ---------------------------------------------~l~~L~~L~l~~n~l~~~~~---~~l~~L~~L~l~ 194 (390)
T 3o6n_A 163 ---------------------------------------------ATTSLQNLQLSSNRLTHVDL---SLIPSLFHANVS 194 (390)
T ss_dssp ---------------------------------------------SCTTCCEEECCSSCCSBCCG---GGCTTCSEEECC
T ss_pred ---------------------------------------------CCCCCCEEECCCCcCCcccc---ccccccceeecc
Confidence 22344555555555444432 234555555555
Q ss_pred ccccCCCCCCCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCc
Q 003435 516 DCTCQELPPLGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPC 595 (820)
Q Consensus 516 ~n~~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 595 (820)
+|.++.++. .++|+.|++++|.+..... ..+++
T Consensus 195 ~n~l~~~~~---~~~L~~L~l~~n~l~~~~~--------------------------------------------~~~~~ 227 (390)
T 3o6n_A 195 YNLLSTLAI---PIAVEELDASHNSINVVRG--------------------------------------------PVNVE 227 (390)
T ss_dssp SSCCSEEEC---CSSCSEEECCSSCCCEEEC--------------------------------------------CCCSS
T ss_pred cccccccCC---CCcceEEECCCCeeeeccc--------------------------------------------ccccc
Confidence 554443321 2344445554443332210 01234
Q ss_pred ccEEEEcCCCCCCCCCCCCCcCceEecccCCccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccc
Q 003435 596 LEKLVVEGCSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLES 675 (820)
Q Consensus 596 L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 675 (820)
|+.|++++|.+.. ...+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+
T Consensus 228 L~~L~l~~n~l~~--------------------~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~- 286 (390)
T 3o6n_A 228 LTILKLQHNNLTD--------------------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA- 286 (390)
T ss_dssp CCEEECCSSCCCC--------------------CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-
T ss_pred ccEEECCCCCCcc--------------------cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-
Confidence 4455555443322 1245566677777777777666666666667777777777765544
Q ss_pred hhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCcc
Q 003435 676 LFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLK 746 (820)
Q Consensus 676 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 746 (820)
++..+..+++|++|++++|++. .+|..+..+++|++|++++|++... + +..+++|+.|++++|++..
T Consensus 287 ~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 287 LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 3444556666666666666543 4555555666666666666665433 2 4556666666666666544
No 37
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.97 E-value=3.2e-31 Score=296.06 Aligned_cols=226 Identities=19% Similarity=0.190 Sum_probs=177.8
Q ss_pred HHHHHHHcCCc-eEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchHHHhhhC-CCCeEeCCCCChHhHHHHHH
Q 003435 2 WWKLEVYWRGR-GFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGRVASMMG-TVPTQHLTCLSSEDSWVLFK 79 (820)
Q Consensus 2 ~~~l~~~l~~~-~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~~~~~~~-~~~~~~l~~l~~~~a~~Lf~ 79 (820)
...+++.|++| ||||||||||+.++..|.. .+||+||||||++.++..++ ....|+|++|+++|||+||.
T Consensus 232 ~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~ 303 (549)
T 2a5y_B 232 KRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLE 303 (549)
T ss_dssp HHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHH
Confidence 46788999996 9999999999843222332 27999999999999999875 33579999999999999999
Q ss_pred HHhcCCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhccCCHHHHHHhhhcchhchhccCcchhhHHHhhhcCCChhH
Q 003435 80 HFAFGSVEDESTELEEIGQKIVAKCKGLPIAIKTIGSILRSKDKEEWLSVADCDLWTLLEFKSHVLPVLKRSYDNLPWHL 159 (820)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~k~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~ 159 (820)
+.+|.... .+.+.+++++|+++|+|+||||+++|+.|+.+. .+|...+....+.. ....++.++++||+.|+...
T Consensus 304 ~~a~~~~~--~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~--~~~~i~~~l~~Sy~~L~~~l 378 (549)
T 2a5y_B 304 AYGMPMPV--GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESR--GLVGVECITPYSYKSLAMAL 378 (549)
T ss_dssp HTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHH--CSSTTCCCSSSSSSSHHHHH
T ss_pred HHhcCCCC--chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcc--cHHHHHHHHhcccccccHHH
Confidence 99886532 478889999999999999999999999998874 23333333222221 24568999999999999999
Q ss_pred HHHHh-----------hhcCCCCCcccCHHHHHHHHHHc--CCcccCCCCCcHHHHHHHHHHHHhhcccccccccccCCc
Q 003435 160 KQCFA-----------YCSIFPKDYWINKEKLVRLWVAE--GFIRLDSGSEDLEETADDYFMELLQHSFFDNIVRGIFGE 226 (820)
Q Consensus 160 k~~fl-----------~~a~f~~~~~i~~~~li~~w~~~--gl~~~~~~~~~~~~~~~~~l~~L~~~~li~~~~~~~~~~ 226 (820)
|.||+ |||+||+++.|+ ++.|+++ ||+.........+++++ ++.+|+++++++....+ .
T Consensus 379 k~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~ 450 (549)
T 2a5y_B 379 QRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---P 450 (549)
T ss_dssp HHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS---S
T ss_pred HHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---C
Confidence 99999 999999999988 8999999 99976643566788777 99999999999876543 2
Q ss_pred EEEEEecchHHHHHHHhhcCce
Q 003435 227 VVMCKVHDYIHFLAQLAAGVEY 248 (820)
Q Consensus 227 ~~~~~~h~~v~~~~~~~~~~~~ 248 (820)
..+|+||++++++++.++..++
T Consensus 451 ~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 451 VLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp SCEEECCHHHHHHHHTTSCTHH
T ss_pred ceEEEeChHHHHHHHHHHHHHH
Confidence 3569999999999998887654
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=7.4e-30 Score=290.16 Aligned_cols=308 Identities=16% Similarity=0.129 Sum_probs=192.5
Q ss_pred CCCCccEEEeecccccccCcc-ccCCceeEEEEeCCCCCcccC-ccccCcccccEEeccCccccccc-cccccCCcccEE
Q 003435 279 RARKLRTLLFLTVKMENLSFP-CQEFQCLRVLDLGQSGIIKLP-DSIGTLKHLRYLDLSHTYIRKIP-GSISKLKHLQTL 355 (820)
Q Consensus 279 ~~~~L~~L~l~~n~~~~l~~~-~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp-~~~~~L~~L~~L 355 (820)
.+++++.+++.+|.+..+|.. |..+++|++|+|++|.+..+| ..|+.+++|++|+|++|.++.+| ..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 345666666666666666655 566666666666666666553 35666666666666666666553 445666666666
Q ss_pred eccCCCCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccC
Q 003435 356 DLSNCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLE 435 (820)
Q Consensus 356 ~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~ 435 (820)
+|++|.+.+..+..|+.+++|++|++++|.+.+..|..|+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------------------------------------- 169 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA--------------------------------------- 169 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT---------------------------------------
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhc---------------------------------------
Confidence 66665544333333466666666666666544333322222
Q ss_pred CCCChhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEec
Q 003435 436 NLKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLV 515 (820)
Q Consensus 436 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 515 (820)
+++|+.|++++|.++.++. ..+++|+.|+++
T Consensus 170 ----------------------------------------------l~~L~~L~L~~N~l~~~~~---~~l~~L~~L~l~ 200 (597)
T 3oja_B 170 ----------------------------------------------TTSLQNLQLSSNRLTHVDL---SLIPSLFHANVS 200 (597)
T ss_dssp ----------------------------------------------CTTCCEEECTTSCCSBCCG---GGCTTCSEEECC
T ss_pred ----------------------------------------------CCcCcEEECcCCCCCCcCh---hhhhhhhhhhcc
Confidence 2344445555555444432 234555555555
Q ss_pred ccccCCCCCCCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCc
Q 003435 516 DCTCQELPPLGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPC 595 (820)
Q Consensus 516 ~n~~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 595 (820)
+|.++.++ ..++|+.|++++|.+....+ . ..++
T Consensus 201 ~n~l~~l~---~~~~L~~L~ls~n~l~~~~~------------------------------------------~--~~~~ 233 (597)
T 3oja_B 201 YNLLSTLA---IPIAVEELDASHNSINVVRG------------------------------------------P--VNVE 233 (597)
T ss_dssp SSCCSEEE---CCTTCSEEECCSSCCCEEEC------------------------------------------S--CCSC
T ss_pred cCcccccc---CCchhheeeccCCccccccc------------------------------------------c--cCCC
Confidence 55444332 22345555555544332210 0 1234
Q ss_pred ccEEEEcCCCCCCCCCCCCCcCceEecccCCccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccc
Q 003435 596 LEKLVVEGCSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLES 675 (820)
Q Consensus 596 L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 675 (820)
|+.|++++|.+.. +..+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+.+
T Consensus 234 L~~L~L~~n~l~~--------------------~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~- 292 (597)
T 3oja_B 234 LTILKLQHNNLTD--------------------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA- 292 (597)
T ss_dssp CCEEECCSSCCCC--------------------CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-
T ss_pred CCEEECCCCCCCC--------------------ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-
Confidence 5555555554332 2356778888899999988888888888888889999998887665
Q ss_pred hhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCcc
Q 003435 676 LFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLK 746 (820)
Q Consensus 676 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 746 (820)
+|..+..+++|++|++++|.+. .+|..+..+++|++|+|++|++.+. | +..+++|+.|++++|++..
T Consensus 293 l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 293 LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCC
Confidence 4556677888888888888765 5777778888888888888877654 2 5667888888888888765
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.6e-29 Score=267.98 Aligned_cols=122 Identities=22% Similarity=0.313 Sum_probs=107.1
Q ss_pred CceeEEEeecc--CCCCcccCCCCccEEEeecccccccCccccCCceeEEEEeCCCCCcccCccccCcccccEEeccCcc
Q 003435 261 TDIRHCTLVGD--LSSSTIPRARKLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTY 338 (820)
Q Consensus 261 ~~~~~l~l~~~--~~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~ 338 (820)
..++.+.+.++ ...+.+..+++|++|++++|.+..++. +..+++|++|++++|.++.+| .+..+++|++|++++|.
T Consensus 44 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~ 121 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN 121 (347)
T ss_dssp TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSC
T ss_pred ccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCc
Confidence 45677777776 233458899999999999999999877 899999999999999999885 59999999999999999
Q ss_pred ccccccccccCCcccEEeccCCCCccccchhccCCCCCcEEecCCCCC
Q 003435 339 IRKIPGSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISSCYS 386 (820)
Q Consensus 339 i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~ 386 (820)
++.+|. +..+++|++|++++|.....++. +..+++|++|++++|.+
T Consensus 122 i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~ 167 (347)
T 4fmz_A 122 ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKV 167 (347)
T ss_dssp CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCc
Confidence 999877 99999999999999877777665 89999999999999863
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2.2e-29 Score=271.24 Aligned_cols=306 Identities=15% Similarity=0.127 Sum_probs=204.1
Q ss_pred CceeEEEEeCCCCCcccCcc-ccCcccccEEeccCccccccc-cccccCCcccEEeccCCCCccccchhccCCCCCcEEe
Q 003435 303 FQCLRVLDLGQSGIIKLPDS-IGTLKHLRYLDLSHTYIRKIP-GSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLD 380 (820)
Q Consensus 303 l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~i~~lp-~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~ 380 (820)
++++++|++++|.+..+|.. |..+++|++|+|++|.++.+| ..|+.+++|++|+|++|.+.+..|..++++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45666777777666666644 566667777777777666654 4666666777777766665555555566666666666
Q ss_pred cCCCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCCCCChhhhhhhccccccccceeeEE
Q 003435 381 ISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLKNVVDAEEAKLHDKVHIRSLGLS 460 (820)
Q Consensus 381 L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 460 (820)
+++|.+. .+|..+
T Consensus 124 L~~n~l~-~l~~~~------------------------------------------------------------------ 136 (390)
T 3o6n_A 124 LERNDLS-SLPRGI------------------------------------------------------------------ 136 (390)
T ss_dssp CCSSCCC-CCCTTT------------------------------------------------------------------
T ss_pred CCCCccC-cCCHHH------------------------------------------------------------------
Confidence 6666422 222110
Q ss_pred eccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEecccccCCCCCCCCCCCCcceeeccCc
Q 003435 461 WSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELPPLGQLPNLKDLYVKGMS 540 (820)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~l~~l~~L~~L~L~~n~ 540 (820)
+..+++|++|++++|.+..+++..+..+++|++|++++|.++.++ ++.+++|+.|++++|.
T Consensus 137 ------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 137 ------------------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNL 197 (390)
T ss_dssp ------------------TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-GGGCTTCSEEECCSSC
T ss_pred ------------------hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc-cccccccceeeccccc
Confidence 112234555555555555554444445555555555555554442 3444445555554443
Q ss_pred CceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCCCCCcCceE
Q 003435 541 AVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPFIRNLKNLA 620 (820)
Q Consensus 541 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~ 620 (820)
+.... ..++|+.|++++|.+...
T Consensus 198 l~~~~----------------------------------------------~~~~L~~L~l~~n~l~~~----------- 220 (390)
T 3o6n_A 198 LSTLA----------------------------------------------IPIAVEELDASHNSINVV----------- 220 (390)
T ss_dssp CSEEE----------------------------------------------CCSSCSEEECCSSCCCEE-----------
T ss_pred ccccC----------------------------------------------CCCcceEEECCCCeeeec-----------
Confidence 22211 223455566655543221
Q ss_pred ecccCCccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccC
Q 003435 621 LCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESL 700 (820)
Q Consensus 621 l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 700 (820)
....+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+ +
T Consensus 221 ----------~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~ 287 (390)
T 3o6n_A 221 ----------RGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-L 287 (390)
T ss_dssp ----------ECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-E
T ss_pred ----------cccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-c
Confidence 112347899999999998765 468889999999999999888888899999999999999998654 6
Q ss_pred ccccCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCch
Q 003435 701 PMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCPQ 768 (820)
Q Consensus 701 ~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~ 768 (820)
|..+..+++|++|++++|++. .+|..+..+++|++|++++|++.+.. +..+++|++|++++|+-
T Consensus 288 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 288 NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCE
T ss_pred CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCc
Confidence 767788999999999999776 56767788999999999999987642 67789999999999863
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=6.1e-29 Score=282.58 Aligned_cols=306 Identities=15% Similarity=0.128 Sum_probs=210.5
Q ss_pred CceeEEEEeCCCCCcccCcc-ccCcccccEEeccCccccccc-cccccCCcccEEeccCCCCccccchhccCCCCCcEEe
Q 003435 303 FQCLRVLDLGQSGIIKLPDS-IGTLKHLRYLDLSHTYIRKIP-GSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLD 380 (820)
Q Consensus 303 l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~i~~lp-~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~ 380 (820)
+.+++.|++++|.+..+|.. |..+++|++|+|++|.|+.+| ..|+.+++|++|+|++|.+.+..|..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 45667777777777766643 566677777777777777653 4667777777777777666665555566677777777
Q ss_pred cCCCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCCCCChhhhhhhccccccccceeeEE
Q 003435 381 ISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLKNVVDAEEAKLHDKVHIRSLGLS 460 (820)
Q Consensus 381 L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 460 (820)
|++|.+. .+|..+
T Consensus 130 L~~n~l~-~l~~~~------------------------------------------------------------------ 142 (597)
T 3oja_B 130 LERNDLS-SLPRGI------------------------------------------------------------------ 142 (597)
T ss_dssp CCSSCCC-CCCTTT------------------------------------------------------------------
T ss_pred eeCCCCC-CCCHHH------------------------------------------------------------------
Confidence 7766533 222110
Q ss_pred eccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEecccccCCCCCCCCCCCCcceeeccCc
Q 003435 461 WSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELPPLGQLPNLKDLYVKGMS 540 (820)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~l~~l~~L~~L~L~~n~ 540 (820)
|..+++|++|++++|.+..+++..+..+++|+.|++++|.++.++ ++.+++|+.|++++|.
T Consensus 143 ------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 143 ------------------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNL 203 (597)
T ss_dssp ------------------TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-GGGCTTCSEEECCSSC
T ss_pred ------------------hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-hhhhhhhhhhhcccCc
Confidence 112235555555555555555544445556666666666555443 3444555555555443
Q ss_pred CceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCCCCCcCceE
Q 003435 541 AVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPFIRNLKNLA 620 (820)
Q Consensus 541 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~ 620 (820)
+.... ..++|+.|++++|.+....+
T Consensus 204 l~~l~----------------------------------------------~~~~L~~L~ls~n~l~~~~~--------- 228 (597)
T 3oja_B 204 LSTLA----------------------------------------------IPIAVEELDASHNSINVVRG--------- 228 (597)
T ss_dssp CSEEE----------------------------------------------CCTTCSEEECCSSCCCEEEC---------
T ss_pred ccccc----------------------------------------------CCchhheeeccCCccccccc---------
Confidence 32211 23346666666664322111
Q ss_pred ecccCCccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccC
Q 003435 621 LCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESL 700 (820)
Q Consensus 621 l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 700 (820)
...++|+.|++++|.+.+. ..+..+++|+.|+|++|.+.+..|..+..+++|++|++++|.+.+ +
T Consensus 229 ------------~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l 293 (597)
T 3oja_B 229 ------------PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-L 293 (597)
T ss_dssp ------------SCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-E
T ss_pred ------------ccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-C
Confidence 1236899999999998874 568899999999999999999888899999999999999998665 6
Q ss_pred ccccCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCch
Q 003435 701 PMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCPQ 768 (820)
Q Consensus 701 ~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~ 768 (820)
|..+..+++|++|+|++|++. .+|..+..+++|+.|++++|.+.+.. +..+++|+.|++++|+-
T Consensus 294 ~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 294 NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCE
T ss_pred CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCC
Confidence 777888999999999999877 67777888999999999999987753 66789999999999863
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=7.3e-28 Score=253.08 Aligned_cols=286 Identities=17% Similarity=0.162 Sum_probs=184.1
Q ss_pred ceeEEEEeCCCCCcccCccccCcccccEEeccCcccccc-ccccccCCcccEEeccCCCCccccchhccCCCCCcEEecC
Q 003435 304 QCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKI-PGSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDIS 382 (820)
Q Consensus 304 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~ 382 (820)
.++++++++++.++.+|..+. ++|++|+|++|.++.+ |..|.++++|++|++++|.+.+..|..|+++++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 478889999999888887664 6889999999998877 4678889999999999888777778888888889999888
Q ss_pred CCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCCCCChhhhhhhccccccccceeeEEec
Q 003435 383 SCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLKNVVDAEEAKLHDKVHIRSLGLSWS 462 (820)
Q Consensus 383 ~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 462 (820)
+|.+. .+|..+.
T Consensus 111 ~n~l~-~l~~~~~------------------------------------------------------------------- 122 (332)
T 2ft3_A 111 KNHLV-EIPPNLP------------------------------------------------------------------- 122 (332)
T ss_dssp SSCCC-SCCSSCC-------------------------------------------------------------------
T ss_pred CCcCC-ccCcccc-------------------------------------------------------------------
Confidence 88632 3332110
Q ss_pred cCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEecccccCC--C-CC-CCCCCCCcceeecc
Q 003435 463 RNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQE--L-PP-LGQLPNLKDLYVKG 538 (820)
Q Consensus 463 ~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~--l-~~-l~~l~~L~~L~L~~ 538 (820)
++|++|++++|.+..++...+..+++|+.|++++|.++. + +. +..+ +|+.|++++
T Consensus 123 --------------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 123 --------------------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp --------------------TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred --------------------ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence 256667777777776666655566666666666665532 1 11 3333 444444444
Q ss_pred CcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCCCCCcCc
Q 003435 539 MSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPFIRNLKN 618 (820)
Q Consensus 539 n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~ 618 (820)
|.+. . +|.
T Consensus 182 n~l~-----------------------------------------------------------------~-l~~------ 189 (332)
T 2ft3_A 182 AKLT-----------------------------------------------------------------G-IPK------ 189 (332)
T ss_dssp SBCS-----------------------------------------------------------------S-CCS------
T ss_pred CCCC-----------------------------------------------------------------c-cCc------
Confidence 4322 1 110
Q ss_pred eEecccCCccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccc
Q 003435 619 LALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLE 698 (820)
Q Consensus 619 L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 698 (820)
.+ .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 190 ------------~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~- 254 (332)
T 2ft3_A 190 ------------DL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS- 254 (332)
T ss_dssp ------------SS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-
T ss_pred ------------cc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-
Confidence 00 134555555555555555555666666666666666655555555666667777777766544
Q ss_pred cCccccCCCCcccEEEecCCCCCCccccccCC------CCCccEEEeccCCCc--ccccccccCCCCcceEEEeCCc
Q 003435 699 SLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQ------HSSLLELSIEGCPML--KLSLKSIEFLGQLQRLVIKKCP 767 (820)
Q Consensus 699 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~------l~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~l~~~~ 767 (820)
.+|..+..+++|++|++++|++.+..+..|.. .++|+.|++++|++. +..|..|..+++|+.+++++|.
T Consensus 255 ~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 255 RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 56666666777777777777666554444433 356777777777766 4566677777777777777653
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.1e-27 Score=251.63 Aligned_cols=287 Identities=16% Similarity=0.126 Sum_probs=202.4
Q ss_pred CCccEEEeecccccccCccccCCceeEEEEeCCCCCcccC-ccccCcccccEEeccCcccccc-ccccccCCcccEEecc
Q 003435 281 RKLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLP-DSIGTLKHLRYLDLSHTYIRKI-PGSISKLKHLQTLDLS 358 (820)
Q Consensus 281 ~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~l-p~~~~~L~~L~~L~L~ 358 (820)
.+++.++++++.+..+|..+. ++|++|++++|.+..++ ..|.++++|++|+|++|.++.+ |..|+++++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 378999999999999998753 68999999999999885 5799999999999999999987 7899999999999999
Q ss_pred CCCCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCCCC
Q 003435 359 NCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLK 438 (820)
Q Consensus 359 ~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~ 438 (820)
+|.+. .+|..+. ++|++|++++|.+....+..+.
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~------------------------------------------- 144 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFS------------------------------------------- 144 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGS-------------------------------------------
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhC-------------------------------------------
Confidence 97755 6776665 8999999999975433222232
Q ss_pred ChhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCC--CCcccccCCCCccEEEecc
Q 003435 439 NVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSV--FPSWLNSGVPNLVKVSLVD 516 (820)
Q Consensus 439 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~L~~ 516 (820)
.+++|+.|++++|.++. .....+..+ +|+.|++++
T Consensus 145 ------------------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 145 ------------------------------------------GLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp ------------------------------------------SCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred ------------------------------------------CCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence 23466777777777642 333333455 999999999
Q ss_pred cccCCCCCCCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcc
Q 003435 517 CTCQELPPLGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCL 596 (820)
Q Consensus 517 n~~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L 596 (820)
|.++.+|.- ..++|+.|++++|.+.....
T Consensus 182 n~l~~l~~~-~~~~L~~L~l~~n~i~~~~~-------------------------------------------------- 210 (332)
T 2ft3_A 182 AKLTGIPKD-LPETLNELHLDHNKIQAIEL-------------------------------------------------- 210 (332)
T ss_dssp SBCSSCCSS-SCSSCSCCBCCSSCCCCCCT--------------------------------------------------
T ss_pred CCCCccCcc-ccCCCCEEECCCCcCCccCH--------------------------------------------------
Confidence 999988861 12677777777765432210
Q ss_pred cEEEEcCCCCCCCCCCCCCcCceEecccCCccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccch
Q 003435 597 EKLVVEGCSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESL 676 (820)
Q Consensus 597 ~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 676 (820)
..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+
T Consensus 211 ---------------------------------~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 256 (332)
T 2ft3_A 211 ---------------------------------EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV 256 (332)
T ss_dssp ---------------------------------TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BC
T ss_pred ---------------------------------HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ec
Confidence 02333445555555555555555555666666666666666544 45
Q ss_pred hhhcCCCCCcceEeeccCcccccCccccCC------CCcccEEEecCCCCC--CccccccCCCCCccEEEeccCC
Q 003435 677 FVFMQSFSSLRHLSILHCDKLESLPMSLEK------FCSLQKLDIVECPRL--VHIPDIMGQHSSLLELSIEGCP 743 (820)
Q Consensus 677 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~------l~~L~~L~L~~n~~~--~~~~~~~~~l~~L~~L~l~~n~ 743 (820)
|..+..+++|++|++++|++.+..+..+.. .++|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 257 p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 555666777777777777665544444443 356888888888776 5666778888888888888875
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.8e-27 Score=249.89 Aligned_cols=289 Identities=18% Similarity=0.159 Sum_probs=188.9
Q ss_pred cCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccccc-cccccCCcccEEeccCCCCccccchhccCCCCCcEE
Q 003435 301 QEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIP-GSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTL 379 (820)
Q Consensus 301 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L 379 (820)
....++++++++++.++.+|..+. ++|++|+|++|.++.+| ..|+++++|++|+|++|.+.+..|..|+++++|++|
T Consensus 28 ~c~c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 28 RCQCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp TCEEETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCcCCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 444578889999888888887664 68899999999998885 478889999999999888777778888888999999
Q ss_pred ecCCCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCCCCChhhhhhhccccccccceeeE
Q 003435 380 DISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLKNVVDAEEAKLHDKVHIRSLGL 459 (820)
Q Consensus 380 ~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 459 (820)
++++|.+. .+|..+.
T Consensus 106 ~Ls~n~l~-~l~~~~~---------------------------------------------------------------- 120 (330)
T 1xku_A 106 YLSKNQLK-ELPEKMP---------------------------------------------------------------- 120 (330)
T ss_dssp ECCSSCCS-BCCSSCC----------------------------------------------------------------
T ss_pred ECCCCcCC-ccChhhc----------------------------------------------------------------
Confidence 98888632 2332110
Q ss_pred EeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEecccccCC--C-CC-CCCCCCCccee
Q 003435 460 SWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQE--L-PP-LGQLPNLKDLY 535 (820)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~--l-~~-l~~l~~L~~L~ 535 (820)
++|++|++++|.+..++...+..+++|+.|++++|.++. + +. ++
T Consensus 121 -----------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--------- 168 (330)
T 1xku_A 121 -----------------------KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ--------- 168 (330)
T ss_dssp -----------------------TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG---------
T ss_pred -----------------------ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhcc---------
Confidence 245556666666555555444455555555555554321 1 11 22
Q ss_pred eccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCCCCC
Q 003435 536 VKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPFIRN 615 (820)
Q Consensus 536 L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 615 (820)
.+++|++|++++|.+.. +|.
T Consensus 169 --------------------------------------------------------~l~~L~~L~l~~n~l~~-l~~--- 188 (330)
T 1xku_A 169 --------------------------------------------------------GMKKLSYIRIADTNITT-IPQ--- 188 (330)
T ss_dssp --------------------------------------------------------GCTTCCEEECCSSCCCS-CCS---
T ss_pred --------------------------------------------------------CCCCcCEEECCCCcccc-CCc---
Confidence 33444444444443321 211
Q ss_pred cCceEecccCCccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCc
Q 003435 616 LKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCD 695 (820)
Q Consensus 616 L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 695 (820)
. ..++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 189 ---------------~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 189 ---------------G--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp ---------------S--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred ---------------c--ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc
Confidence 0 11456667777776666666667777777777777777666555566777777777777776
Q ss_pred ccccCccccCCCCcccEEEecCCCCCCccccccCC------CCCccEEEeccCCCcc--cccccccCCCCcceEEEeCC
Q 003435 696 KLESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQ------HSSLLELSIEGCPMLK--LSLKSIEFLGQLQRLVIKKC 766 (820)
Q Consensus 696 ~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~------l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~~ 766 (820)
+. .+|..+..+++|++|++++|++.+..+..|.. .++|+.|++++|++.. ..|..|..+.+++.+++++|
T Consensus 252 l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 252 LV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred Cc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 44 56667777777777777777776655555432 3677788888887654 45667777777887777764
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=1.7e-26 Score=242.58 Aligned_cols=288 Identities=17% Similarity=0.153 Sum_probs=185.1
Q ss_pred CCccEEEeecccccccCccccCCceeEEEEeCCCCCcccCc-cccCcccccEEeccCcccccc-ccccccCCcccEEecc
Q 003435 281 RKLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPD-SIGTLKHLRYLDLSHTYIRKI-PGSISKLKHLQTLDLS 358 (820)
Q Consensus 281 ~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~i~~l-p~~~~~L~~L~~L~L~ 358 (820)
.+++.++++++.+..+|..+. +.+++|+|++|.++.++. .|+++++|++|+|++|.++.+ |..|+++++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 378899999999999887654 678999999999998864 789999999999999999977 7889999999999999
Q ss_pred CCCCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCCCC
Q 003435 359 NCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLK 438 (820)
Q Consensus 359 ~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~ 438 (820)
+|.+. .+|..+. ++|++|++++|.+.+..+..+.+++
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~---------------------------------------- 145 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLN---------------------------------------- 145 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCT----------------------------------------
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCc----------------------------------------
Confidence 97654 6776554 7999999999875544443444444
Q ss_pred ChhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCC--CCcccccCCCCccEEEecc
Q 003435 439 NVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSV--FPSWLNSGVPNLVKVSLVD 516 (820)
Q Consensus 439 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~L~~ 516 (820)
+|+.|++++|.+.. .....+..+++|+.|++++
T Consensus 146 ---------------------------------------------~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 146 ---------------------------------------------QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp ---------------------------------------------TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred ---------------------------------------------cccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence 44444444444432 2222234567777777777
Q ss_pred cccCCCCCCCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcc
Q 003435 517 CTCQELPPLGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCL 596 (820)
Q Consensus 517 n~~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L 596 (820)
|.++.+|... .++|+.|++++|.+.....
T Consensus 181 n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~-------------------------------------------------- 209 (330)
T 1xku_A 181 TNITTIPQGL-PPSLTELHLDGNKITKVDA-------------------------------------------------- 209 (330)
T ss_dssp SCCCSCCSSC-CTTCSEEECTTSCCCEECT--------------------------------------------------
T ss_pred CccccCCccc-cccCCEEECCCCcCCccCH--------------------------------------------------
Confidence 7666655411 1555666665554333211
Q ss_pred cEEEEcCCCCCCCCCCCCCcCceEecccCCccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccch
Q 003435 597 EKLVVEGCSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESL 676 (820)
Q Consensus 597 ~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 676 (820)
..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+
T Consensus 210 ---------------------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 255 (330)
T 1xku_A 210 ---------------------------------ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255 (330)
T ss_dssp ---------------------------------GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SC
T ss_pred ---------------------------------HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cC
Confidence 12233444555555555544444444555556666666665444 44
Q ss_pred hhhcCCCCCcceEeeccCcccccCccccCC------CCcccEEEecCCCCCC--ccccccCCCCCccEEEeccCC
Q 003435 677 FVFMQSFSSLRHLSILHCDKLESLPMSLEK------FCSLQKLDIVECPRLV--HIPDIMGQHSSLLELSIEGCP 743 (820)
Q Consensus 677 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~------l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~n~ 743 (820)
|..+..+++|++|++++|++.+..+..|.. .++|+.|++++|++.. ..|..|..+++++.+++++|+
T Consensus 256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 455566666666666666655444444432 3677788888887653 445677778888888888774
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=5.5e-27 Score=243.35 Aligned_cols=89 Identities=26% Similarity=0.343 Sum_probs=63.4
Q ss_pred ceeEEEEeCCCCCc---ccCccccCcccccEEeccC-cccc-ccccccccCCcccEEeccCCCCccccchhccCCCCCcE
Q 003435 304 QCLRVLDLGQSGII---KLPDSIGTLKHLRYLDLSH-TYIR-KIPGSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRT 378 (820)
Q Consensus 304 ~~L~~L~L~~n~l~---~lp~~~~~l~~L~~L~Ls~-n~i~-~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~ 378 (820)
.++++|+|++|.+. .+|..|+++++|++|+|++ |.+. .+|..|+++++|++|+|++|.+.+.+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 45777777777776 4677777777777777774 6666 56777777777777777777777777777777777777
Q ss_pred EecCCCCCccccCc
Q 003435 379 LDISSCYSLTHMPL 392 (820)
Q Consensus 379 L~L~~n~~~~~~p~ 392 (820)
|++++|.+.+.+|.
T Consensus 130 L~Ls~N~l~~~~p~ 143 (313)
T 1ogq_A 130 LDFSYNALSGTLPP 143 (313)
T ss_dssp EECCSSEEESCCCG
T ss_pred EeCCCCccCCcCCh
Confidence 77777764444443
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=2.3e-29 Score=278.25 Aligned_cols=115 Identities=17% Similarity=0.040 Sum_probs=68.7
Q ss_pred cCCCCCcceEEccCCCCCccccccC-----CCCCCccEEEEccCCCccc----hhhhcCCCCCcceEeeccCcccccCcc
Q 003435 632 LSRFPSLSSLVVDNFPELNCLSDKT-----GNLNSLVKLTVNECDNLES----LFVFMQSFSSLRHLSILHCDKLESLPM 702 (820)
Q Consensus 632 ~~~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~ 702 (820)
+..+++|++|++++|.+.+..+..+ ...++|++|++++|.+... ++..+..+++|++|++++|.+.+..+.
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 4446667777777776544322221 2235677777777766544 344555667777777777765443333
Q ss_pred ccC----C-CCcccEEEecCCCCCC----ccccccCCCCCccEEEeccCCCcc
Q 003435 703 SLE----K-FCSLQKLDIVECPRLV----HIPDIMGQHSSLLELSIEGCPMLK 746 (820)
Q Consensus 703 ~l~----~-l~~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~ 746 (820)
.+. . .++|++|++++|.+.+ .+|..+..+++|++|++++|++.+
T Consensus 360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 222 1 5577777777776654 556666667777777777777654
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=7.6e-26 Score=236.08 Aligned_cols=91 Identities=26% Similarity=0.416 Sum_probs=75.7
Q ss_pred CceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEEeccCCCCccccchhccCCCCCcEEecC
Q 003435 303 FQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDIS 382 (820)
Q Consensus 303 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~ 382 (820)
..++++|+|++|.+..+|..+..+++|++|+|++|.++.+|..++++++|++|+|++|.+. .+|..++++++|++|+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 4668888888888888888888888888888888888888888888888888888887765 778888888889999998
Q ss_pred CCCCccccCccc
Q 003435 383 SCYSLTHMPLGI 394 (820)
Q Consensus 383 ~n~~~~~~p~~~ 394 (820)
+|...+.+|..+
T Consensus 159 ~n~~~~~~p~~~ 170 (328)
T 4fcg_A 159 ACPELTELPEPL 170 (328)
T ss_dssp EETTCCCCCSCS
T ss_pred CCCCccccChhH
Confidence 887777776544
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=7.6e-26 Score=234.76 Aligned_cols=251 Identities=16% Similarity=0.208 Sum_probs=170.6
Q ss_pred CCCcEEEEecCCCCC---CCcccccCCCCccEEEecc-cccC-CCCC-CCCCCCCcceeeccCcCceEeCccccCCCccc
Q 003435 483 HNLKVLDLKGYRGSV---FPSWLNSGVPNLVKVSLVD-CTCQ-ELPP-LGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIR 556 (820)
Q Consensus 483 ~~L~~L~L~~n~~~~---~~~~~~~~l~~L~~L~L~~-n~~~-~l~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~ 556 (820)
.+++.|++++|.+.. +|..+ ..+++|++|++++ |.+. .+|. ++.+++|++|++++|.+....+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p---------- 118 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP---------- 118 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC----------
T ss_pred ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC----------
Confidence 356666666666553 44433 3566666666663 4443 3333 5566666666666655443221
Q ss_pred CCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCCCCCcCceEecccCCccccccCCCC
Q 003435 557 GFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFP 636 (820)
Q Consensus 557 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~ 636 (820)
..+..+++|++|++++|.+.+.+| ..+..++
T Consensus 119 -------------------------------~~~~~l~~L~~L~Ls~N~l~~~~p------------------~~~~~l~ 149 (313)
T 1ogq_A 119 -------------------------------DFLSQIKTLVTLDFSYNALSGTLP------------------PSISSLP 149 (313)
T ss_dssp -------------------------------GGGGGCTTCCEEECCSSEEESCCC------------------GGGGGCT
T ss_pred -------------------------------HHHhCCCCCCEEeCCCCccCCcCC------------------hHHhcCC
Confidence 111144556666666665544333 3567778
Q ss_pred CcceEEccCCCCCccccccCCCCC-CccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEe
Q 003435 637 SLSSLVVDNFPELNCLSDKTGNLN-SLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDI 715 (820)
Q Consensus 637 ~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L 715 (820)
+|++|++++|.+.+.+|..+..++ +|++|++++|.+.+.+|..+..++ |++|++++|.+.+..|..+..+++|++|++
T Consensus 150 ~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 228 (313)
T 1ogq_A 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228 (313)
T ss_dssp TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEEC
T ss_pred CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEEC
Confidence 888888888888777787787777 888888888887777777777776 888888888877777888888888888888
Q ss_pred cCCCCCCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCchhhHHHhccccCCCcccccCCceeEecC
Q 003435 716 VECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDPIAQMEVVSMTT 795 (820)
Q Consensus 716 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~l~l~~ 795 (820)
++|.+.+.+|. +..+++|++|++++|.+.+.+|..+..+++|++|++++|. +.+..+.. ..+++|+.+++++
T Consensus 229 ~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~------l~~~ip~~-~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 229 AKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN------LCGEIPQG-GNLQRFDVSAYAN 300 (313)
T ss_dssp CSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE------EEEECCCS-TTGGGSCGGGTCS
T ss_pred CCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc------ccccCCCC-ccccccChHHhcC
Confidence 88877766665 6778888888888888887788888888888888887753 33343433 6777788888888
Q ss_pred ceeeecc
Q 003435 796 LNLMADE 802 (820)
Q Consensus 796 ~n~~~~~ 802 (820)
+..+.|.
T Consensus 301 N~~lc~~ 307 (313)
T 1ogq_A 301 NKCLCGS 307 (313)
T ss_dssp SSEEEST
T ss_pred CCCccCC
Confidence 5556654
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.92 E-value=1.1e-26 Score=265.61 Aligned_cols=244 Identities=14% Similarity=0.065 Sum_probs=124.8
Q ss_pred CCCCccEEEecccccCCCCC-CCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCC
Q 003435 505 GVPNLVKVSLVDCTCQELPP-LGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGT 583 (820)
Q Consensus 505 ~l~~L~~L~L~~n~~~~l~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 583 (820)
.+++|+.|.++++....+|. +..+++|++|++++|.+..... ...+..+++|+.|++.+. +...
T Consensus 268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~-----~~~~~~~~~L~~L~L~~~--~~~~-------- 332 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDH-----CTLIQKCPNLEVLETRNV--IGDR-------- 332 (592)
T ss_dssp CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHH-----HHHHTTCTTCCEEEEEGG--GHHH--------
T ss_pred ccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHH-----HHHHHhCcCCCEEeccCc--cCHH--------
Confidence 45666666666665555555 5566677777777765322110 011245666666666522 1100
Q ss_pred ccCCCCCCCCCcccEEEEcC----------CCCCCC--C----CCCCCcCceEecccC--CccccccCC-CCCcceEEcc
Q 003435 584 DEFDGMQEPFPCLEKLVVEG----------CSMLNT--L----PFIRNLKNLALCNSN--DKLVCSLSR-FPSLSSLVVD 644 (820)
Q Consensus 584 ~~~~~~~~~~~~L~~L~l~~----------~~~~~~--~----~~l~~L~~L~l~~~~--~~~~~~~~~-l~~L~~L~l~ 644 (820)
.++.....+++|++|++++ |...+. + ..+++|+.|++..+. ...+..+.. +++|+.|+++
T Consensus 333 -~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 333 -GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp -HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred -HHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 0111112567788888884 443331 1 125667777774443 122223332 6677777775
Q ss_pred ----CCCCCcc-----ccccCCCCCCccEEEEccCC--Cccchhh-hcCCCCCcceEeeccCcccc-cCccccCCCCccc
Q 003435 645 ----NFPELNC-----LSDKTGNLNSLVKLTVNECD--NLESLFV-FMQSFSSLRHLSILHCDKLE-SLPMSLEKFCSLQ 711 (820)
Q Consensus 645 ----~n~~~~~-----~~~~~~~l~~L~~L~L~~n~--~~~~~~~-~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~ 711 (820)
.|.+.+. ++..+.++++|++|++++|. +....+. ....+++|++|++++|++.+ .++..+.++++|+
T Consensus 412 ~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 491 (592)
T 3ogk_B 412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQ 491 (592)
T ss_dssp ECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCC
T ss_pred ecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccC
Confidence 3333331 22234456677777776543 2332222 22346667777777766543 2343445666777
Q ss_pred EEEecCCCCCCc-cccccCCCCCccEEEeccCCCcccccc-cccCCCCcceEEEe
Q 003435 712 KLDIVECPRLVH-IPDIMGQHSSLLELSIEGCPMLKLSLK-SIEFLGQLQRLVIK 764 (820)
Q Consensus 712 ~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~ 764 (820)
+|++++|++... ++..+..+++|++|++++|++...-.. ....++.+....+.
T Consensus 492 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 492 KLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIP 546 (592)
T ss_dssp EEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEEC
T ss_pred eeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEec
Confidence 777777765432 233334566777777777775543222 12244555554443
No 51
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.92 E-value=1e-27 Score=265.17 Aligned_cols=375 Identities=17% Similarity=0.108 Sum_probs=229.7
Q ss_pred CceeEEEEeCCCCCcccC--ccccCcccccEEeccCcccc-----ccccccccCCcccEEeccCCCCccccchhcc-CCC
Q 003435 303 FQCLRVLDLGQSGIIKLP--DSIGTLKHLRYLDLSHTYIR-----KIPGSISKLKHLQTLDLSNCYNLEELPKGIC-QLT 374 (820)
Q Consensus 303 l~~L~~L~L~~n~l~~lp--~~~~~l~~L~~L~Ls~n~i~-----~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~-~l~ 374 (820)
.++|++|+|++|.++..+ ..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.+....+..+. .++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 367899999999987543 33778889999999999888 4577788889999999999876654444433 344
Q ss_pred ----CCcEEecCCCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCCCCChhhhhhhcccc
Q 003435 375 ----NLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLKNVVDAEEAKLHD 450 (820)
Q Consensus 375 ----~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~l~~ 450 (820)
+|++|++++|.+...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~------------------------------------------------------------- 100 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGA------------------------------------------------------------- 100 (461)
T ss_dssp STTCCCCEEECTTSCCBGG-------------------------------------------------------------
T ss_pred hCCCceeEEEccCCCCCHH-------------------------------------------------------------
Confidence 699999988864321
Q ss_pred ccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCC-----cccccCCCCccEEEecccccCCC---
Q 003435 451 KVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFP-----SWLNSGVPNLVKVSLVDCTCQEL--- 522 (820)
Q Consensus 451 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~-----~~~~~~l~~L~~L~L~~n~~~~l--- 522 (820)
....++..+..+++|++|++++|.++... .......++|++|++++|.++..
T Consensus 101 --------------------~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 101 --------------------GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp --------------------GHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred --------------------HHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 01112222333334444444444432111 01112234555555555544432
Q ss_pred --CC-CCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEE
Q 003435 523 --PP-LGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKL 599 (820)
Q Consensus 523 --~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L 599 (820)
+. +..+++|+.|++++|.+.......+. ..+ ....++|++|
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~-----~~l-------------------------------~~~~~~L~~L 204 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLC-----QGL-------------------------------KDSPCQLEAL 204 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHH-----HHH-------------------------------HHSCCCCCEE
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHH-----HHH-------------------------------hcCCCCceEE
Confidence 11 34455666666666654321100000 000 0012344555
Q ss_pred EEcCCCCCCC----CC----CCCCcCceEecccCCcc-------ccccCCCCCcceEEccCCCCCcc----ccccCCCCC
Q 003435 600 VVEGCSMLNT----LP----FIRNLKNLALCNSNDKL-------VCSLSRFPSLSSLVVDNFPELNC----LSDKTGNLN 660 (820)
Q Consensus 600 ~l~~~~~~~~----~~----~l~~L~~L~l~~~~~~~-------~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~ 660 (820)
++++|.+... ++ .+++|+.|++++|.... ...+..+++|++|++++|.+... ++..+..++
T Consensus 205 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 284 (461)
T 1z7x_W 205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284 (461)
T ss_dssp ECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT
T ss_pred EccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC
Confidence 5555543331 11 14555555555554111 11234588999999999988764 566677799
Q ss_pred CccEEEEccCCCccchhhh-----cCCCCCcceEeeccCccccc----CccccCCCCcccEEEecCCCCCCccccccC--
Q 003435 661 SLVKLTVNECDNLESLFVF-----MQSFSSLRHLSILHCDKLES----LPMSLEKFCSLQKLDIVECPRLVHIPDIMG-- 729 (820)
Q Consensus 661 ~L~~L~L~~n~~~~~~~~~-----~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~-- 729 (820)
+|++|++++|.+....+.. ....++|++|++++|.+.+. ++..+..+++|++|++++|++.+..+..+.
T Consensus 285 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 364 (461)
T 1z7x_W 285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 364 (461)
T ss_dssp TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHH
T ss_pred CcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHH
Confidence 9999999999876543332 23447999999999997654 466777889999999999987665443332
Q ss_pred --C-CCCccEEEeccCCCcc----cccccccCCCCcceEEEeCCchhhHHHhccccCCCcccccCCceeEecC
Q 003435 730 --Q-HSSLLELSIEGCPMLK----LSLKSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDPIAQMEVVSMTT 795 (820)
Q Consensus 730 --~-l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~l~l~~ 795 (820)
. .++|++|++++|.+.+ .+|..+..+++|++|++++|+ ++...+......--.....|+.|.+.+
T Consensus 365 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~~~~L~~L~~~~ 436 (461)
T 1z7x_W 365 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLLEQLVLYD 436 (461)
T ss_dssp HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC-CCHHHHHHHHHHhccCCcchhheeecc
Confidence 2 6799999999999886 678888889999999999984 332222111100011234577777776
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=4e-24 Score=226.67 Aligned_cols=79 Identities=22% Similarity=0.253 Sum_probs=58.2
Q ss_pred eeEEEEeCCCCCcccCccccCcccccEEeccCcccccccc-ccccCCcccEEeccCCCCccccchhccCCCCCcEEecCC
Q 003435 305 CLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPG-SISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISS 383 (820)
Q Consensus 305 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~ 383 (820)
...+.++++++++.+|..+. ++|++|++++|.++.+|. .|.++++|++|++++|.+.+..|..|+++++|++|++++
T Consensus 32 ~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp TTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 33457778888888877655 478888888888887754 677888888888888776666666677777777777777
Q ss_pred CC
Q 003435 384 CY 385 (820)
Q Consensus 384 n~ 385 (820)
|.
T Consensus 110 n~ 111 (353)
T 2z80_A 110 NY 111 (353)
T ss_dssp SC
T ss_pred Cc
Confidence 75
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=3.1e-24 Score=223.93 Aligned_cols=229 Identities=19% Similarity=0.249 Sum_probs=189.9
Q ss_pred CCCCcEEEEecCCCCCCCcccccCCCCccEEEecccccCCCCC-CCCCCCCcceeeccCcCceEeCccccCCCcccCCCC
Q 003435 482 PHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELPP-LGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPS 560 (820)
Q Consensus 482 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~ 560 (820)
.++++.|++++|.+..+|..++ .+++|++|++++|.++.+|. ++.+++|+.|++++|.+..+.
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp--------------- 143 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAF-RLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALP--------------- 143 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGG-GGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCC---------------
T ss_pred ccceeEEEccCCCchhcChhhh-hCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCc---------------
Confidence 4689999999999999998876 49999999999999888887 889999999999998655221
Q ss_pred cceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCC-CCCcCceEecccCCccccccCCCCCcc
Q 003435 561 LKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPF-IRNLKNLALCNSNDKLVCSLSRFPSLS 639 (820)
Q Consensus 561 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~l~~L~ 639 (820)
..+..+++|++|++++|...+.+|. +.. . .....+..+++|+
T Consensus 144 ---------------------------~~l~~l~~L~~L~L~~n~~~~~~p~~~~~---~-------~~~~~~~~l~~L~ 186 (328)
T 4fcg_A 144 ---------------------------ASIASLNRLRELSIRACPELTELPEPLAS---T-------DASGEHQGLVNLQ 186 (328)
T ss_dssp ---------------------------GGGGGCTTCCEEEEEEETTCCCCCSCSEE---E-------C-CCCEEESTTCC
T ss_pred ---------------------------HHHhcCcCCCEEECCCCCCccccChhHhh---c-------cchhhhccCCCCC
Confidence 1122567788888888877777764 111 0 1112355688999
Q ss_pred eEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCC
Q 003435 640 SLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECP 719 (820)
Q Consensus 640 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~ 719 (820)
+|++++|.+. .+|..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|+
T Consensus 187 ~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 187 SLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp EEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCT
T ss_pred EEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCC
Confidence 9999999877 677778899999999999998775 55578899999999999999999999999999999999999999
Q ss_pred CCCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeC
Q 003435 720 RLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKK 765 (820)
Q Consensus 720 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 765 (820)
+.+.+|..+..+++|++|++++|++.+.+|..+.++++|+.+++..
T Consensus 265 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred chhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 9999999899999999999999999999999999999999997764
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=6.6e-24 Score=238.00 Aligned_cols=265 Identities=20% Similarity=0.133 Sum_probs=148.9
Q ss_pred CccEEEeecccccccCccccCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEEeccCCC
Q 003435 282 KLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSNCY 361 (820)
Q Consensus 282 ~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~ 361 (820)
+++.|++++|.+..+|..+. ++|++|+|++|.++.+|. .+++|++|+|++|.|+.+|. .+++|++|++++|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence 35566666666666665543 566666666666666655 35666666666666666665 55666666666654
Q ss_pred CccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCCCCChh
Q 003435 362 NLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLKNVV 441 (820)
Q Consensus 362 ~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~ 441 (820)
+. .+|. .+++|+.|++++|.+. .+|..
T Consensus 113 l~-~l~~---~l~~L~~L~L~~N~l~-~lp~~------------------------------------------------ 139 (622)
T 3g06_A 113 LT-HLPA---LPSGLCKLWIFGNQLT-SLPVL------------------------------------------------ 139 (622)
T ss_dssp CC-CCCC---CCTTCCEEECCSSCCS-CCCCC------------------------------------------------
T ss_pred CC-CCCC---CCCCcCEEECCCCCCC-cCCCC------------------------------------------------
Confidence 33 2333 4556666666665422 12211
Q ss_pred hhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEecccccCC
Q 003435 442 DAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQE 521 (820)
Q Consensus 442 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 521 (820)
+++|++|++++|.++.+|. .+++|+.|++++|.++.
T Consensus 140 ----------------------------------------l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 140 ----------------------------------------PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp ----------------------------------------CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC
T ss_pred ----------------------------------------CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCC
Confidence 1245555555555555443 23455666666665555
Q ss_pred CCCCCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEE
Q 003435 522 LPPLGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVV 601 (820)
Q Consensus 522 l~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 601 (820)
+| ..+++|+.|++++|.+..+. . .+++|+.|++
T Consensus 176 l~--~~~~~L~~L~Ls~N~l~~l~------------------------------------------~---~~~~L~~L~L 208 (622)
T 3g06_A 176 LP--MLPSGLQELSVSDNQLASLP------------------------------------------T---LPSELYKLWA 208 (622)
T ss_dssp CC--CCCTTCCEEECCSSCCSCCC------------------------------------------C---CCTTCCEEEC
T ss_pred Cc--ccCCCCcEEECCCCCCCCCC------------------------------------------C---ccchhhEEEC
Confidence 55 34455555555555433211 0 1234455555
Q ss_pred cCCCCCCCCCCCCCcCceEecccCCccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcC
Q 003435 602 EGCSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQ 681 (820)
Q Consensus 602 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 681 (820)
++|.+.. +|. .+++|+.|++++|.+.+ +| ..+++|+.|++++|.+. .+|.
T Consensus 209 ~~N~l~~-l~~---------------------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~--- 258 (622)
T 3g06_A 209 YNNRLTS-LPA---------------------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM--- 258 (622)
T ss_dssp CSSCCSS-CCC---------------------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---
T ss_pred cCCcccc-cCC---------------------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---
Confidence 5543321 221 13556666666666554 22 34566777777777554 3443
Q ss_pred CCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCCCccccccC
Q 003435 682 SFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLVHIPDIMG 729 (820)
Q Consensus 682 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 729 (820)
.+++|+.|++++|.+. .+|..+.++++|+.|+|++|++.+..|..+.
T Consensus 259 ~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 259 LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 5567777777777655 5666777777777777777777776665543
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=1.5e-24 Score=229.87 Aligned_cols=106 Identities=20% Similarity=0.174 Sum_probs=87.5
Q ss_pred CCCCccEEEeecccccccCccccCCceeEEEEeCCCCCcccCc-cccCcccccEEeccCcccccc-ccccccCCcccEEe
Q 003435 279 RARKLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPD-SIGTLKHLRYLDLSHTYIRKI-PGSISKLKHLQTLD 356 (820)
Q Consensus 279 ~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~i~~l-p~~~~~L~~L~~L~ 356 (820)
.|+.....+.+++.++.+|..+. ++|++|++++|.++.+|. .|.++++|++|+|++|.++.+ |..|+++++|++|+
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 45555667888899999988654 489999999999998865 789999999999999999977 56799999999999
Q ss_pred ccCCCCccccchhccCCCCCcEEecCCCCC
Q 003435 357 LSNCYNLEELPKGICQLTNLRTLDISSCYS 386 (820)
Q Consensus 357 L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~ 386 (820)
+++|.+.+..+..++++++|++|++++|.+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 136 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCC
Confidence 999877654444588899999999998863
No 56
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.91 E-value=1e-24 Score=245.06 Aligned_cols=193 Identities=16% Similarity=0.198 Sum_probs=154.4
Q ss_pred HHHHHHc---CCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchHHHhhhCCCCeEeCC------CCChHh
Q 003435 3 WKLEVYW---RGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGRVASMMGTVPTQHLT------CLSSED 73 (820)
Q Consensus 3 ~~l~~~l---~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~~~~~~~~~~~~~l~------~l~~~~ 73 (820)
+++++.| ++||+||||||||+ .+.|+.+ .+||+||||||++.++..+.....|+|+ +|+++|
T Consensus 232 e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f-------~pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eE 302 (1221)
T 1vt4_I 232 AELRRLLKSKPYENCLLVLLNVQN--AKAWNAF-------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302 (1221)
T ss_dssp HHHHHHHHHSTTSSCEEEEESCCC--HHHHHHH-------HSSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHH
T ss_pred HHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhh-------CCCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHH
Confidence 3456655 78999999999987 4667653 2799999999999998755444467777 999999
Q ss_pred HHHHHHHHhcCCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhccC--CHHHHHHhhhcchhchhccCcchhhHHHhh
Q 003435 74 SWVLFKHFAFGSVEDESTELEEIGQKIVAKCKGLPIAIKTIGSILRSK--DKEEWLSVADCDLWTLLEFKSHVLPVLKRS 151 (820)
Q Consensus 74 a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~k--~~~~w~~~~~~~~~~~~~~~~~i~~~l~~s 151 (820)
||+||++... .. . .+++.+ .|+|+||||+++|++|+++ ...+|... ....+..+|++|
T Consensus 303 A~eLF~~~~g-~~---~---eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~----------~~~~I~aaLelS 362 (1221)
T 1vt4_I 303 VKSLLLKYLD-CR---P---QDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHV----------NCDKLTTIIESS 362 (1221)
T ss_dssp HHHHHHHHHC-CC---T---TTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHC----------SCHHHHHHHHHH
T ss_pred HHHHHHHHcC-CC---H---HHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcC----------ChhHHHHHHHHH
Confidence 9999999843 21 1 122333 3999999999999999988 48889753 134689999999
Q ss_pred hcCCChhH-HHHHhhhcCCCCCcccCHHHHHHHHHHcCCcccCCCCCcHHHHHHHHHHHHhhcccccccccccCCcEEEE
Q 003435 152 YDNLPWHL-KQCFAYCSIFPKDYWINKEKLVRLWVAEGFIRLDSGSEDLEETADDYFMELLQHSFFDNIVRGIFGEVVMC 230 (820)
Q Consensus 152 y~~L~~~~-k~~fl~~a~f~~~~~i~~~~li~~w~~~gl~~~~~~~~~~~~~~~~~l~~L~~~~li~~~~~~~~~~~~~~ 230 (820)
|+.|+++. |.||++||+||+++.|+.+.++.+|.++| ++.+.+++.+|+++++++.... ..+|
T Consensus 363 Yd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d~~-----~~rY 426 (1221)
T 1vt4_I 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQPK-----ESTI 426 (1221)
T ss_dssp HHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBCSS-----SSEE
T ss_pred HHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHHHHHHhhCCEEEeCC-----CCEE
Confidence 99999999 99999999999999999999999998776 1347889999999999987421 1458
Q ss_pred EecchHHHHH
Q 003435 231 KVHDYIHFLA 240 (820)
Q Consensus 231 ~~h~~v~~~~ 240 (820)
+||+++++++
T Consensus 427 rMHDLllELr 436 (1221)
T 1vt4_I 427 SIPSIYLELK 436 (1221)
T ss_dssp BCCCHHHHHH
T ss_pred EehHHHHHHh
Confidence 9999988744
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=3e-23 Score=232.67 Aligned_cols=268 Identities=24% Similarity=0.249 Sum_probs=205.4
Q ss_pred ceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEEeccCCCCccccchhccCCCCCcEEecCC
Q 003435 304 QCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISS 383 (820)
Q Consensus 304 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~ 383 (820)
.++++|++++|+++.+|..+. ++|++|+|++|.|+.+|. .+++|++|+|++|.+ ..+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQL-TSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCC-SCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcC-CcCCC---CCCCCCEEECcC
Confidence 458999999999999998776 799999999999999987 578999999999774 45665 678899999988
Q ss_pred CCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCCCCChhhhhhhccccccccceeeEEecc
Q 003435 384 CYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLKNVVDAEEAKLHDKVHIRSLGLSWSR 463 (820)
Q Consensus 384 n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 463 (820)
|.+.+ +|.
T Consensus 111 N~l~~-l~~----------------------------------------------------------------------- 118 (622)
T 3g06_A 111 NPLTH-LPA----------------------------------------------------------------------- 118 (622)
T ss_dssp CCCCC-CCC-----------------------------------------------------------------------
T ss_pred CcCCC-CCC-----------------------------------------------------------------------
Confidence 86322 221
Q ss_pred CCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEecccccCCCCCCCCCCCCcceeeccCcCce
Q 003435 464 NAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELPPLGQLPNLKDLYVKGMSAVQ 543 (820)
Q Consensus 464 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~l~~l~~L~~L~L~~n~~~~ 543 (820)
.+++|+.|++++|.++.+|.. +++|++|++++|.++.+|. .+++|+.|++++|.+..
T Consensus 119 -----------------~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 119 -----------------LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp -----------------CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC
T ss_pred -----------------CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCC--ccCCCCEEECCCCCCCC
Confidence 113677788888888777753 4788888888888877765 34677777777775432
Q ss_pred EeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCCCCCcCceEecc
Q 003435 544 IIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPFIRNLKNLALCN 623 (820)
Q Consensus 544 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~ 623 (820)
+. ..+++|+.|++++|.+.. +|.
T Consensus 176 l~---------------------------------------------~~~~~L~~L~Ls~N~l~~-l~~----------- 198 (622)
T 3g06_A 176 LP---------------------------------------------MLPSGLQELSVSDNQLAS-LPT----------- 198 (622)
T ss_dssp CC---------------------------------------------CCCTTCCEEECCSSCCSC-CCC-----------
T ss_pred Cc---------------------------------------------ccCCCCcEEECCCCCCCC-CCC-----------
Confidence 11 145678888888876543 331
Q ss_pred cCCccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccc
Q 003435 624 SNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMS 703 (820)
Q Consensus 624 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 703 (820)
.+++|+.|++++|.+... |. .+++|+.|++++|.+.+ +| ..+++|++|++++|.+. .+|.
T Consensus 199 ----------~~~~L~~L~L~~N~l~~l-~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~- 258 (622)
T 3g06_A 199 ----------LPSELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM- 258 (622)
T ss_dssp ----------CCTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC-
T ss_pred ----------ccchhhEEECcCCccccc-CC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc-
Confidence 236788899999887643 32 35899999999997765 45 56789999999999865 5665
Q ss_pred cCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCcccccccccCC
Q 003435 704 LEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFL 755 (820)
Q Consensus 704 l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 755 (820)
.+++|++|+|++|++. .+|..+.++++|+.|++++|++.+..|..+..+
T Consensus 259 --~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 259 --LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp --CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred --ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 6789999999999877 778889999999999999999999877765544
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=1.7e-23 Score=229.68 Aligned_cols=66 Identities=21% Similarity=0.120 Sum_probs=37.7
Q ss_pred ccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcc
Q 003435 631 SLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDK 696 (820)
Q Consensus 631 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 696 (820)
.+..+++|+.|++++|.+.+..+..|.++++|+.|+|++|++.+..+..+..+++|++|++++|++
T Consensus 237 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 344455566666666665555555566666666666666655544444555556666666666554
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=2.2e-23 Score=227.86 Aligned_cols=67 Identities=15% Similarity=0.075 Sum_probs=46.8
Q ss_pred ccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCccc
Q 003435 631 SLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKL 697 (820)
Q Consensus 631 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 697 (820)
.+..+++|+.|++++|.+.+..+..|.++++|+.|+|++|++....+..+..+++|+.|++++|++.
T Consensus 226 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 4455667777777777777776777777777777777777666655556677777777777777654
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=5.8e-23 Score=224.53 Aligned_cols=245 Identities=21% Similarity=0.224 Sum_probs=180.0
Q ss_pred ccEEEeecccccccCccccCCceeEEEEeCCCCCcccC-ccccCcccccEEeccCccccccc-cccccCCcccEEeccCC
Q 003435 283 LRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLP-DSIGTLKHLRYLDLSHTYIRKIP-GSISKLKHLQTLDLSNC 360 (820)
Q Consensus 283 L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp-~~~~~L~~L~~L~L~~n 360 (820)
.+.++..+..++.+|..+. +++++|+|++|.+..++ ..|.++++|++|+|++|.|+.++ ..|.++++|++|+|++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4567777777888887644 57888888888888764 66888888888888888888774 67888888888888887
Q ss_pred CCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCCCCCh
Q 003435 361 YNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLKNV 440 (820)
Q Consensus 361 ~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~ 440 (820)
.+....+..|..+++|++|++++|.+....+..|.+++
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~------------------------------------------ 160 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP------------------------------------------ 160 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCT------------------------------------------
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCc------------------------------------------
Confidence 76655555688888888888888874433333343333
Q ss_pred hhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEec-CCCCCCCcccccCCCCccEEEeccccc
Q 003435 441 VDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKG-YRGSVFPSWLNSGVPNLVKVSLVDCTC 519 (820)
Q Consensus 441 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~L~~n~~ 519 (820)
+|+.|++++ +.+..++...+..+++|++|++++|.+
T Consensus 161 -------------------------------------------~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 161 -------------------------------------------SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp -------------------------------------------TCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred -------------------------------------------ccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence 444555554 334445555556788888888888888
Q ss_pred CCCCCCCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEE
Q 003435 520 QELPPLGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKL 599 (820)
Q Consensus 520 ~~l~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L 599 (820)
+.+|.+..+++|+.|+|++|.+..+.+ ..+..+++|+.|
T Consensus 198 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----------------------------------------~~~~~l~~L~~L 236 (440)
T 3zyj_A 198 REIPNLTPLIKLDELDLSGNHLSAIRP-----------------------------------------GSFQGLMHLQKL 236 (440)
T ss_dssp SSCCCCTTCSSCCEEECTTSCCCEECT-----------------------------------------TTTTTCTTCCEE
T ss_pred ccccccCCCcccCEEECCCCccCccCh-----------------------------------------hhhccCccCCEE
Confidence 888888888888888888887665432 122255667777
Q ss_pred EEcCCCCCCCCCCCCCcCceEecccCCccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCc
Q 003435 600 VVEGCSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNL 673 (820)
Q Consensus 600 ~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~ 673 (820)
++++|.+....+ ..+..+++|+.|+|++|.+.+..+..+..+++|+.|+|++|++.
T Consensus 237 ~L~~n~l~~~~~------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 237 WMIQSQIQVIER------------------NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTCCCCEECT------------------TSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ECCCCceeEECh------------------hhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 777775544322 36778899999999999999888888999999999999999764
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=9e-23 Score=223.88 Aligned_cols=248 Identities=20% Similarity=0.213 Sum_probs=161.2
Q ss_pred eeEEEEeCCCCCcccCccccCcccccEEeccCcccccc-ccccccCCcccEEeccCCCCccccchhccCCCCCcEEecCC
Q 003435 305 CLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKI-PGSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISS 383 (820)
Q Consensus 305 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~ 383 (820)
..+.++.++++++.+|..+. ++|++|+|++|.|+.+ |..|.++++|++|+|++|.+.+..|..|.++++|++|+|++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 45678888888888887664 6788888888888877 57788888888888888877777777788888888888888
Q ss_pred CCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCCCCChhhhhhhccccccccceeeEEecc
Q 003435 384 CYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLKNVVDAEEAKLHDKVHIRSLGLSWSR 463 (820)
Q Consensus 384 n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 463 (820)
|.+....+..|
T Consensus 133 n~l~~~~~~~~--------------------------------------------------------------------- 143 (452)
T 3zyi_A 133 NWLTVIPSGAF--------------------------------------------------------------------- 143 (452)
T ss_dssp SCCSBCCTTTS---------------------------------------------------------------------
T ss_pred CcCCccChhhh---------------------------------------------------------------------
Confidence 76332211111
Q ss_pred CCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEecccccCCCCCCCCCCCCcceeeccCcCce
Q 003435 464 NAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELPPLGQLPNLKDLYVKGMSAVQ 543 (820)
Q Consensus 464 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~l~~l~~L~~L~L~~n~~~~ 543 (820)
..+++|++|++++|.+..++... +..+++|+.|++++|...+
T Consensus 144 ----------------~~l~~L~~L~L~~N~l~~~~~~~----------------------~~~l~~L~~L~l~~~~~l~ 185 (452)
T 3zyi_A 144 ----------------EYLSKLRELWLRNNPIESIPSYA----------------------FNRVPSLMRLDLGELKKLE 185 (452)
T ss_dssp ----------------SSCTTCCEEECCSCCCCEECTTT----------------------TTTCTTCCEEECCCCTTCC
T ss_pred ----------------cccCCCCEEECCCCCcceeCHhH----------------------HhcCCcccEEeCCCCCCcc
Confidence 11223444444444444333333 4444555555554432221
Q ss_pred EeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCCCCCcCceEecc
Q 003435 544 IIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPFIRNLKNLALCN 623 (820)
Q Consensus 544 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~ 623 (820)
..+ ...+..+++|++|++++|.+.. +|
T Consensus 186 ~i~----------------------------------------~~~~~~l~~L~~L~L~~n~l~~-~~------------ 212 (452)
T 3zyi_A 186 YIS----------------------------------------EGAFEGLFNLKYLNLGMCNIKD-MP------------ 212 (452)
T ss_dssp EEC----------------------------------------TTTTTTCTTCCEEECTTSCCSS-CC------------
T ss_pred ccC----------------------------------------hhhccCCCCCCEEECCCCcccc-cc------------
Confidence 110 1112244555666666554332 22
Q ss_pred cCCccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccc
Q 003435 624 SNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMS 703 (820)
Q Consensus 624 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 703 (820)
.+..+++|++|++++|.+.+..+..|.++++|+.|++++|.+.+..+..+..+++|++|+|++|.+.+..+..
T Consensus 213 -------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 285 (452)
T 3zyi_A 213 -------NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL 285 (452)
T ss_dssp -------CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred -------cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence 2455677888888888887777777888888888888888777776777777888888888888766655666
Q ss_pred cCCCCcccEEEecCCCCC
Q 003435 704 LEKFCSLQKLDIVECPRL 721 (820)
Q Consensus 704 l~~l~~L~~L~L~~n~~~ 721 (820)
+..+++|+.|+|++|++.
T Consensus 286 ~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 286 FTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp STTCTTCCEEECCSSCEE
T ss_pred hccccCCCEEEccCCCcC
Confidence 777778888888877653
No 62
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.90 E-value=8.2e-26 Score=258.33 Aligned_cols=269 Identities=13% Similarity=0.044 Sum_probs=156.4
Q ss_pred CCCCCcEEEEecCCCCCCCcccccCCCCccEEEeccccc----CC-CCCCCCCCCCcceeeccCcCceEeCccccCCCcc
Q 003435 481 PPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTC----QE-LPPLGQLPNLKDLYVKGMSAVQIIGYKFYGNDAI 555 (820)
Q Consensus 481 ~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~----~~-l~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~ 555 (820)
.+++|+.|++++|.+..++..+ ..+++|++|+++.+.. .. ...+..+++|+.|+++++..... +..+
T Consensus 218 ~~~~L~~L~L~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-------~~~~ 289 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELVGFF-KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM-------PILF 289 (592)
T ss_dssp HCTTCCEEECSSCBGGGGHHHH-HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTG-------GGGG
T ss_pred hCCCCcEEeccCccHHHHHHHH-hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHH-------HHHH
Confidence 3467777777777666555433 4577788888775421 11 12367778888888877532221 1223
Q ss_pred cCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCC----CCCCcCceEecc--------
Q 003435 556 RGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLP----FIRNLKNLALCN-------- 623 (820)
Q Consensus 556 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~l~~L~~L~l~~-------- 623 (820)
..+++|++|+++++. +.... .......+++|++|+++++.....++ .+++|++|++.+
T Consensus 290 ~~~~~L~~L~Ls~~~-l~~~~---------~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~ 359 (592)
T 3ogk_B 290 PFAAQIRKLDLLYAL-LETED---------HCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGME 359 (592)
T ss_dssp GGGGGCCEEEETTCC-CCHHH---------HHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTS
T ss_pred hhcCCCcEEecCCCc-CCHHH---------HHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccc
Confidence 456778888887764 22111 11112367788888887432111111 256777888774
Q ss_pred --cCCcc----ccccCCCCCcceEEccCCCCCccccccCCC-CCCccEEEEcc----CCCcc-----chhhhcCCCCCcc
Q 003435 624 --SNDKL----VCSLSRFPSLSSLVVDNFPELNCLSDKTGN-LNSLVKLTVNE----CDNLE-----SLFVFMQSFSSLR 687 (820)
Q Consensus 624 --~~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~L~~----n~~~~-----~~~~~~~~l~~L~ 687 (820)
|.... ......+++|++|+++.|.+.+..+..+.. +++|+.|++++ |.+.+ .++..+.++++|+
T Consensus 360 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~ 439 (592)
T 3ogk_B 360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR 439 (592)
T ss_dssp STTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCC
T ss_pred cccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCC
Confidence 33211 111234777888887777766655444443 77778887763 23332 1333455677788
Q ss_pred eEeeccCc--ccccCcccc-CCCCcccEEEecCCCCCC-ccccccCCCCCccEEEeccCCCccc-ccccccCCCCcceEE
Q 003435 688 HLSILHCD--KLESLPMSL-EKFCSLQKLDIVECPRLV-HIPDIMGQHSSLLELSIEGCPMLKL-SLKSIEFLGQLQRLV 762 (820)
Q Consensus 688 ~L~l~~n~--~~~~~~~~l-~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~ 762 (820)
+|++++|. +.+..+..+ ..+++|++|++++|++.+ .++..+.++++|++|++++|++... ++..+..+++|++|+
T Consensus 440 ~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 519 (592)
T 3ogk_B 440 RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW 519 (592)
T ss_dssp EEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEE
T ss_pred EEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeE
Confidence 88876654 233222233 236778888888777654 3445556777788888888876543 344445677788887
Q ss_pred EeCCc
Q 003435 763 IKKCP 767 (820)
Q Consensus 763 l~~~~ 767 (820)
+++|.
T Consensus 520 ls~n~ 524 (592)
T 3ogk_B 520 VQGYR 524 (592)
T ss_dssp EESCB
T ss_pred CcCCc
Confidence 77775
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=1.8e-23 Score=217.01 Aligned_cols=98 Identities=19% Similarity=0.174 Sum_probs=66.3
Q ss_pred EEEeecccccccCccccCCceeEEEEeCCCCCcccCcc-ccCcccccEEeccCcccccc---ccccccCCcccEEeccCC
Q 003435 285 TLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDS-IGTLKHLRYLDLSHTYIRKI---PGSISKLKHLQTLDLSNC 360 (820)
Q Consensus 285 ~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~i~~l---p~~~~~L~~L~~L~L~~n 360 (820)
.++.+++.++.+|..+. ++|++|+|++|.++.+|.. |.++++|++|+|++|.++.+ |..+..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 45666666777766533 4677777777777777643 67777777777777777644 556666777777777775
Q ss_pred CCccccchhccCCCCCcEEecCCCC
Q 003435 361 YNLEELPKGICQLTNLRTLDISSCY 385 (820)
Q Consensus 361 ~~~~~lp~~~~~l~~L~~L~L~~n~ 385 (820)
.+. .+|..+..+++|++|++++|.
T Consensus 89 ~i~-~l~~~~~~l~~L~~L~l~~n~ 112 (306)
T 2z66_A 89 GVI-TMSSNFLGLEQLEHLDFQHSN 112 (306)
T ss_dssp SEE-EEEEEEETCTTCCEEECTTSE
T ss_pred ccc-cChhhcCCCCCCCEEECCCCc
Confidence 543 455567777777777777765
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=7.9e-24 Score=219.66 Aligned_cols=246 Identities=15% Similarity=0.100 Sum_probs=182.8
Q ss_pred cEEEEecCCCCCCCcccccCCCCccEEEecccccCCCCC--CCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcce
Q 003435 486 KVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELPP--LGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKL 563 (820)
Q Consensus 486 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~--l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~ 563 (820)
+.++.+++.++.+|..++ ++|++|++++|.++.+|. ++.+++|+.|++++|.+...... ......+++|++
T Consensus 10 ~~l~c~~~~l~~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~~~~~L~~ 82 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC----SQSDFGTTSLKY 82 (306)
T ss_dssp TEEECCSSCCSSCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEE----EHHHHSCSCCCE
T ss_pred CEEEcCCCCcccCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCc----ccccccccccCE
Confidence 467777888888887553 688999999998888887 78899999999999887644210 011124566666
Q ss_pred eecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCCCCCcCceEecccCCccccccCCCCCcceEEc
Q 003435 564 LQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFPSLSSLVV 643 (820)
Q Consensus 564 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l 643 (820)
|+++++. +..+. ..+..+++|++|++++|.+....+ ...+..+++|++|++
T Consensus 83 L~Ls~n~-i~~l~-----------~~~~~l~~L~~L~l~~n~l~~~~~-----------------~~~~~~l~~L~~L~l 133 (306)
T 2z66_A 83 LDLSFNG-VITMS-----------SNFLGLEQLEHLDFQHSNLKQMSE-----------------FSVFLSLRNLIYLDI 133 (306)
T ss_dssp EECCSCS-EEEEE-----------EEEETCTTCCEEECTTSEEESSTT-----------------TTTTTTCTTCCEEEC
T ss_pred EECCCCc-cccCh-----------hhcCCCCCCCEEECCCCccccccc-----------------chhhhhccCCCEEEC
Confidence 6665542 11111 112245556666666554332111 125677888999999
Q ss_pred cCCCCCccccccCCCCCCccEEEEccCCCcc-chhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCCC
Q 003435 644 DNFPELNCLSDKTGNLNSLVKLTVNECDNLE-SLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLV 722 (820)
Q Consensus 644 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~ 722 (820)
++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+
T Consensus 134 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp TTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence 9998888888888888999999999987766 467788888999999999998877778888889999999999998887
Q ss_pred ccccccCCCCCccEEEeccCCCcccccccccCCC-CcceEEEeCCc
Q 003435 723 HIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLG-QLQRLVIKKCP 767 (820)
Q Consensus 723 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~~~ 767 (820)
..+..+..+++|++|++++|++.+..|..+..++ +|++|++++|+
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 7777788889999999999998888888888884 89999988875
No 65
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.90 E-value=9.7e-24 Score=263.20 Aligned_cols=216 Identities=22% Similarity=0.289 Sum_probs=172.3
Q ss_pred HHHHHHcCCc--eEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchHHHhh-hCCCCeEeCCC-CChHhHHHHH
Q 003435 3 WKLEVYWRGR--GFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGRVASM-MGTVPTQHLTC-LSSEDSWVLF 78 (820)
Q Consensus 3 ~~l~~~l~~~--~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~~~~~-~~~~~~~~l~~-l~~~~a~~Lf 78 (820)
+++++.+++| ||||||||||+. +.|.. .++||+||||||++.++.. ++....+++++ |+++||++||
T Consensus 225 ~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~-------~~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~ 295 (1249)
T 3sfz_A 225 DRLRVLMLRKHPRSLLILDDVWDP--WVLKA-------FDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEIL 295 (1249)
T ss_dssp HHHHHHTSSSSCSCEEEEESCCCH--HHHTT-------TCSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHH
T ss_pred HHHHHHHhccCCCEEEEEecCCCH--HHHHh-------hcCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHH
Confidence 4567777766 999999999863 33332 3789999999999999854 45667899996 9999999999
Q ss_pred HHHhcCCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhccCCHHHHHHhhhcchhch----hcc----CcchhhHHHh
Q 003435 79 KHFAFGSVEDESTELEEIGQKIVAKCKGLPIAIKTIGSILRSKDKEEWLSVADCDLWTL----LEF----KSHVLPVLKR 150 (820)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~k~~~~w~~~~~~~~~~~----~~~----~~~i~~~l~~ 150 (820)
...++.. .+.+.+++++|+++|+|+||||+++|++|+.++ ..|...+....... ... ...+..+|++
T Consensus 296 ~~~~~~~----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 370 (1249)
T 3sfz_A 296 SLFVNMK----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSI 370 (1249)
T ss_dssp HHHHTSC----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHH
T ss_pred HHhhCCC----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHH
Confidence 9988543 234456799999999999999999999999887 45766554432211 110 1358899999
Q ss_pred hhcCCChhHHHHHhhhcCCCCCcccCHHHHHHHHHHcCCcccCCCCCcHHHHHHHHHHHHhhcccccccccccCCcEEEE
Q 003435 151 SYDNLPWHLKQCFAYCSIFPKDYWINKEKLVRLWVAEGFIRLDSGSEDLEETADDYFMELLQHSFFDNIVRGIFGEVVMC 230 (820)
Q Consensus 151 sy~~L~~~~k~~fl~~a~f~~~~~i~~~~li~~w~~~gl~~~~~~~~~~~~~~~~~l~~L~~~~li~~~~~~~~~~~~~~ 230 (820)
||+.|+++.|.||++||+||+++.|+.+.++..|.++ ++.+++++.+|+++++++.... +...+|
T Consensus 371 s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~~~~~---~~~~~~ 435 (1249)
T 3sfz_A 371 SVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNKSLLFCNRN---GKSFCY 435 (1249)
T ss_dssp HHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSCEEEES---SSSEEE
T ss_pred HHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHhccceEEecC---CCceEE
Confidence 9999999999999999999999999999999999432 4668899999999999985432 334679
Q ss_pred EecchHHHHHHHhhcCc
Q 003435 231 KVHDYIHFLAQLAAGVE 247 (820)
Q Consensus 231 ~~h~~v~~~~~~~~~~~ 247 (820)
+||++++++++.....+
T Consensus 436 ~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 436 YLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp ECCHHHHHHHHHHTGGG
T ss_pred EecHHHHHHHHhhhhHH
Confidence 99999999998876654
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=4e-23 Score=211.84 Aligned_cols=77 Identities=21% Similarity=0.169 Sum_probs=46.5
Q ss_pred EEEEeCCCCCcccCccccCcccccEEeccCccccccc-cccccCCcccEEeccCCCCccccchhccCCCCCcEEecCCCC
Q 003435 307 RVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIP-GSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISSCY 385 (820)
Q Consensus 307 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~ 385 (820)
++++.++++++.+|..+ .++|++|+|++|.++.+| ..|..+++|++|++++|.+.+..|..++.+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 45566666666665543 246666666666666554 456666666666666665555555556666666666666664
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=5.4e-23 Score=210.83 Aligned_cols=221 Identities=14% Similarity=0.092 Sum_probs=145.6
Q ss_pred cEEEEecCCCCCCCcccccCCCCccEEEecccccCCCCC--CCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcce
Q 003435 486 KVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELPP--LGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKL 563 (820)
Q Consensus 486 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~--l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~ 563 (820)
+.++.+++.++.+|..+ .++|++|++++|.++.+++ ++.+++|+.|++++|.+..+.+.
T Consensus 14 ~~~~c~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---------------- 74 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA---------------- 74 (285)
T ss_dssp CEEECCSSCCSSCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT----------------
T ss_pred eEEEcCcCCcccCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh----------------
Confidence 56777777788887644 4688888888888888775 78888888888888876654321
Q ss_pred eecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCCCCCcCceEecccCCccccccCCCCCcceEEc
Q 003435 564 LQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFPSLSSLVV 643 (820)
Q Consensus 564 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l 643 (820)
.+..+++|++|++++|...+.++ +..+..+++|++|++
T Consensus 75 -------------------------~~~~l~~L~~L~l~~n~~l~~~~-----------------~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 75 -------------------------AFTGLALLEQLDLSDNAQLRSVD-----------------PATFHGLGRLHTLHL 112 (285)
T ss_dssp -------------------------TTTTCTTCCEEECCSCTTCCCCC-----------------TTTTTTCTTCCEEEC
T ss_pred -------------------------hcCCccCCCEEeCCCCCCccccC-----------------HHHhcCCcCCCEEEC
Confidence 12245566666666665333221 124455666666666
Q ss_pred cCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCCCc
Q 003435 644 DNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLVH 723 (820)
Q Consensus 644 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~ 723 (820)
++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 66666666666666666777777777666555444566667777777777665554444566667777777777766666
Q ss_pred cccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCc
Q 003435 724 IPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCP 767 (820)
Q Consensus 724 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 767 (820)
.|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+
T Consensus 193 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 66666667777777777777666555566667777777776654
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=1.1e-23 Score=219.31 Aligned_cols=63 Identities=6% Similarity=0.019 Sum_probs=36.2
Q ss_pred cCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCc-cchhhhcCCCCCcceEeeccCc
Q 003435 632 LSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNL-ESLFVFMQSFSSLRHLSILHCD 695 (820)
Q Consensus 632 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~l~~n~ 695 (820)
+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|++. +.++..+..+++|+.|++++|+
T Consensus 210 ~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 210 FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 4455566666666665543 4445556666666666666655 4445555566666666665443
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=1.1e-23 Score=219.32 Aligned_cols=246 Identities=11% Similarity=0.017 Sum_probs=178.5
Q ss_pred ccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEecccccCCCCCCCCCCCCcceeeccCcCceEeCccccCCCcccC
Q 003435 478 FLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELPPLGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRG 557 (820)
Q Consensus 478 ~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~ 557 (820)
.+..+++|++|++++|.++.+++..+..+++|++|++++|.++.+++++.+++|+.|++++|.+..+. .
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~-----------~ 97 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL-----------V 97 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE-----------E
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc-----------C
Confidence 34556789999999999888887666788999999999998887777888899999999988766543 2
Q ss_pred CCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCCCCCcCceEecccCCccccccCCCCC
Q 003435 558 FPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFPS 637 (820)
Q Consensus 558 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~ 637 (820)
.++|++|++.++. +..+. . ..+++|++|++++|.+... .+..+..+++
T Consensus 98 ~~~L~~L~l~~n~-l~~~~----------~---~~~~~L~~L~l~~N~l~~~------------------~~~~~~~l~~ 145 (317)
T 3o53_A 98 GPSIETLHAANNN-ISRVS----------C---SRGQGKKNIYLANNKITML------------------RDLDEGCRSR 145 (317)
T ss_dssp CTTCCEEECCSSC-CSEEE----------E---CCCSSCEEEECCSSCCCSG------------------GGBCTGGGSS
T ss_pred CCCcCEEECCCCc-cCCcC----------c---cccCCCCEEECCCCCCCCc------------------cchhhhccCC
Confidence 3556666655531 11111 0 0234455555555543321 2235667788
Q ss_pred cceEEccCCCCCccccccC-CCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEec
Q 003435 638 LSSLVVDNFPELNCLSDKT-GNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIV 716 (820)
Q Consensus 638 L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~ 716 (820)
|++|++++|.+.+..+..+ ..+++|++|++++|.+.+. + ....+++|++|++++|.+.+ +|..+..+++|++|+++
T Consensus 146 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~ 222 (317)
T 3o53_A 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLR 222 (317)
T ss_dssp EEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECT
T ss_pred CCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECc
Confidence 8899999888887766655 4688899999999876655 3 33458889999999988664 44468888899999999
Q ss_pred CCCCCCccccccCCCCCccEEEeccCCCc-ccccccccCCCCcceEEEeCCchhh
Q 003435 717 ECPRLVHIPDIMGQHSSLLELSIEGCPML-KLSLKSIEFLGQLQRLVIKKCPQLE 770 (820)
Q Consensus 717 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~~~~L~ 770 (820)
+|++. .+|..+..+++|+.|++++|++. +.+|..+..+++|+.+++.+|..++
T Consensus 223 ~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 223 NNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp TSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 98776 56777888889999999999888 6677788888888888777665554
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=1.2e-23 Score=218.39 Aligned_cols=83 Identities=19% Similarity=0.179 Sum_probs=49.8
Q ss_pred cCCceeEEEEeCCCCCcccCccccCcccccEEeccCcccc--ccccccc-------cCCcccEEeccCCCCccccchhc-
Q 003435 301 QEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIR--KIPGSIS-------KLKHLQTLDLSNCYNLEELPKGI- 370 (820)
Q Consensus 301 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~--~lp~~~~-------~L~~L~~L~L~~n~~~~~lp~~~- 370 (820)
...++|++|++++|.+ .+|..+... |++|+|++|.++ .+|..+. ++++|++|+|++|.+.+.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred ccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 3445566666666666 566554433 666666666664 3444444 56666666666666666666554
Q ss_pred -cCCCCCcEEecCCCCC
Q 003435 371 -CQLTNLRTLDISSCYS 386 (820)
Q Consensus 371 -~~l~~L~~L~L~~n~~ 386 (820)
+.+++|++|++++|.+
T Consensus 117 ~~~l~~L~~L~Ls~N~l 133 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSW 133 (312)
T ss_dssp SCCSCCCSEEEEESCBC
T ss_pred HhcCCCccEEEccCCCC
Confidence 5666666666666653
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=9.5e-23 Score=211.60 Aligned_cols=130 Identities=18% Similarity=0.168 Sum_probs=72.1
Q ss_pred cCCCCCcceEEccCCCCCcc--ccccC--CCCCCccEEEEccCCCcc--chh-hhcCCCCCcceEeeccCcccccCc-cc
Q 003435 632 LSRFPSLSSLVVDNFPELNC--LSDKT--GNLNSLVKLTVNECDNLE--SLF-VFMQSFSSLRHLSILHCDKLESLP-MS 703 (820)
Q Consensus 632 ~~~l~~L~~L~l~~n~~~~~--~~~~~--~~l~~L~~L~L~~n~~~~--~~~-~~~~~l~~L~~L~l~~n~~~~~~~-~~ 703 (820)
+..+++|++|++++|.+.+. .+..+ ..+++|++|++++|.+.+ .++ ..+..+++|++|++++|.+.+..| ..
T Consensus 169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 248 (312)
T 1wwl_A 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248 (312)
T ss_dssp CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence 33445555555555554443 12222 556666666666665542 111 234456666666666666555443 34
Q ss_pred cCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCC
Q 003435 704 LEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKC 766 (820)
Q Consensus 704 l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 766 (820)
+..+++|++|++++|.+. .+|..+. ++|++|++++|++.+. |. +..+++|++|++++|
T Consensus 249 ~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTC
T ss_pred hhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCC
Confidence 445666666666666554 5555444 6666666666666554 43 666666666666654
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=5.3e-23 Score=226.51 Aligned_cols=241 Identities=11% Similarity=0.017 Sum_probs=170.3
Q ss_pred hccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEecccccCCCCCCCCCCCCcceeeccCcCceEeCccccCCCccc
Q 003435 477 EFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELPPLGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIR 556 (820)
Q Consensus 477 ~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~ 556 (820)
.....+++|+.|++++|.++.+++..+..+++|+.|+|++|.+++.++++.+++|+.|++++|.+..+.
T Consensus 28 ~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~----------- 96 (487)
T 3oja_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL----------- 96 (487)
T ss_dssp TTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEE-----------
T ss_pred HhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCC-----------
Confidence 334455689999999999988887667789999999999998887777889999999999998766543
Q ss_pred CCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCCCCCcCceEecccCCccccccCCCC
Q 003435 557 GFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFP 636 (820)
Q Consensus 557 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~ 636 (820)
..++|+.|+++++. +..+. + ..+++|+.|++++|.+.+ ..+..+..++
T Consensus 97 ~~~~L~~L~L~~N~-l~~~~----------~---~~l~~L~~L~L~~N~l~~------------------~~~~~~~~l~ 144 (487)
T 3oja_A 97 VGPSIETLHAANNN-ISRVS----------C---SRGQGKKNIYLANNKITM------------------LRDLDEGCRS 144 (487)
T ss_dssp ECTTCCEEECCSSC-CCCEE----------E---CCCSSCEEEECCSSCCCS------------------GGGBCGGGGS
T ss_pred CCCCcCEEECcCCc-CCCCC----------c---cccCCCCEEECCCCCCCC------------------CCchhhcCCC
Confidence 12455555555431 11110 0 023444444444444332 2233566778
Q ss_pred CcceEEccCCCCCccccccCC-CCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEe
Q 003435 637 SLSSLVVDNFPELNCLSDKTG-NLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDI 715 (820)
Q Consensus 637 ~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L 715 (820)
+|+.|++++|.+.+..|..+. .+++|++|+|++|.+.+.. ....+++|++|++++|.+.+ +|..+..+++|+.|++
T Consensus 145 ~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~L 221 (487)
T 3oja_A 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISL 221 (487)
T ss_dssp SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEEC
T ss_pred CCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEe
Confidence 888888888888887777665 6888888888888776652 24458888888888887665 4445778888888888
Q ss_pred cCCCCCCccccccCCCCCccEEEeccCCCc-ccccccccCCCCcceEEEe
Q 003435 716 VECPRLVHIPDIMGQHSSLLELSIEGCPML-KLSLKSIEFLGQLQRLVIK 764 (820)
Q Consensus 716 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~ 764 (820)
++|.+.+ +|..+..+++|+.|++++|++. +.+|..+..++.|+.+++.
T Consensus 222 s~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 222 RNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 8887764 6777788888888888888877 4566777777777777654
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=1.3e-24 Score=248.48 Aligned_cols=281 Identities=17% Similarity=0.146 Sum_probs=124.2
Q ss_pred ccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCC-------CCCCcccccCCCCccEE-EecccccCCC
Q 003435 451 KVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRG-------SVFPSWLNSGVPNLVKV-SLVDCTCQEL 522 (820)
Q Consensus 451 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~-------~~~~~~~~~~l~~L~~L-~L~~n~~~~l 522 (820)
+++|+.|+++++. ....++..+..+++|+.|++..+.. ..++..+ ..+++|+.| .+.+.....+
T Consensus 210 ~~~L~~L~L~~~~-------~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l-~~~~~L~~Ls~~~~~~~~~l 281 (594)
T 2p1m_B 210 CPNLKSLKLNRAV-------PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL-SGCKELRCLSGFWDAVPAYL 281 (594)
T ss_dssp CTTCCEEECCTTS-------CHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH-HTCTTCCEEECCBTCCGGGG
T ss_pred CCCCcEEecCCCC-------cHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH-hcCCCcccccCCcccchhhH
Confidence 5667777776552 1222444455567788887655432 1112222 456777777 3443333344
Q ss_pred CC-CCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEE
Q 003435 523 PP-LGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVV 601 (820)
Q Consensus 523 ~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 601 (820)
+. +..+++|+.|++++|.+.... + ...+..+++|++|.+.++. ... .+......+++|++|++
T Consensus 282 ~~~~~~~~~L~~L~L~~~~l~~~~---l--~~~~~~~~~L~~L~l~~~~--~~~---------~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 282 PAVYSVCSRLTTLNLSYATVQSYD---L--VKLLCQCPKLQRLWVLDYI--EDA---------GLEVLASTCKDLRELRV 345 (594)
T ss_dssp GGGHHHHTTCCEEECTTCCCCHHH---H--HHHHTTCTTCCEEEEEGGG--HHH---------HHHHHHHHCTTCCEEEE
T ss_pred HHHHHhhCCCCEEEccCCCCCHHH---H--HHHHhcCCCcCEEeCcCcc--CHH---------HHHHHHHhCCCCCEEEE
Confidence 44 335677777777777633210 0 0112356666666666541 100 00011113566666666
Q ss_pred cCCCCCCCCCCCCCcCceEecccCCc---ccccc-CCCCCcceEEccCCCCCccccccCC-CCCCccEEEEc-----cCC
Q 003435 602 EGCSMLNTLPFIRNLKNLALCNSNDK---LVCSL-SRFPSLSSLVVDNFPELNCLSDKTG-NLNSLVKLTVN-----ECD 671 (820)
Q Consensus 602 ~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~-----~n~ 671 (820)
++|...+. ..+... ....+ ..+++|++|.++.|.+.+.....+. .+++|+.|+++ +|.
T Consensus 346 ~~~~~~g~------------~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 346 FPSEPFVM------------EPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp ECSCTTCS------------SCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred ecCccccc------------ccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence 44311000 000000 00011 1245555555554444433322222 34555555555 222
Q ss_pred Ccc------chhhhcCCCCCcceEeeccCcccccCccccCC-CCcccEEEecCCCCCCcccccc-CCCCCccEEEeccCC
Q 003435 672 NLE------SLFVFMQSFSSLRHLSILHCDKLESLPMSLEK-FCSLQKLDIVECPRLVHIPDIM-GQHSSLLELSIEGCP 743 (820)
Q Consensus 672 ~~~------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-l~~L~~L~L~~n~~~~~~~~~~-~~l~~L~~L~l~~n~ 743 (820)
..+ .++..+..+++|++|++++ .+....+..+.. +++|++|++++|.+.+..+..+ .++++|++|++++|+
T Consensus 414 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp TTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred cccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence 222 1122234455555555544 223222223322 4555555555555443322222 335555555555555
Q ss_pred Cccccc-ccccCCCCcceEEEeCCch
Q 003435 744 MLKLSL-KSIEFLGQLQRLVIKKCPQ 768 (820)
Q Consensus 744 ~~~~~~-~~~~~l~~L~~L~l~~~~~ 768 (820)
+.+..+ .....+++|++|++++|+.
T Consensus 493 ~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 493 FGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 533221 2233455555555555543
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.86 E-value=4.3e-24 Score=244.24 Aligned_cols=260 Identities=18% Similarity=0.170 Sum_probs=132.7
Q ss_pred hhHHHHhhccCCCCCCcEE-EEecCCCCCCCcccccCCCCccEEEecccccCC--CCC-CCCCCCCcceeeccCcCceEe
Q 003435 470 DKAQALIEFLRPPHNLKVL-DLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQE--LPP-LGQLPNLKDLYVKGMSAVQII 545 (820)
Q Consensus 470 ~~~~~~~~~l~~~~~L~~L-~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~--l~~-l~~l~~L~~L~L~~n~~~~~~ 545 (820)
+....+...+..+++|+.| .+.......++... ..+++|++|++++|.++. +.. +..+++|+.|++++| +...
T Consensus 252 ~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~- 328 (594)
T 2p1m_B 252 DVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVY-SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDA- 328 (594)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGH-HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHH-
T ss_pred hhHHHHHHHHhcCCCcccccCCcccchhhHHHHH-HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHH-
Confidence 3344445555666677776 23322222222222 246778888888776443 222 456778888888776 2210
Q ss_pred CccccCCCcccCCCCcceeecCCCc--------ccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCCCCCcC
Q 003435 546 GYKFYGNDAIRGFPSLKLLQLFDMP--------NLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPFIRNLK 617 (820)
Q Consensus 546 ~~~~~~~~~~~~l~~L~~L~l~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~ 617 (820)
.+ ......+++|++|++.++. .+.... .......+++|++|.+..+.+....
T Consensus 329 --~l--~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~---------l~~l~~~~~~L~~L~~~~~~l~~~~------- 388 (594)
T 2p1m_B 329 --GL--EVLASTCKDLRELRVFPSEPFVMEPNVALTEQG---------LVSVSMGCPKLESVLYFCRQMTNAA------- 388 (594)
T ss_dssp --HH--HHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH---------HHHHHHHCTTCCEEEEEESCCCHHH-------
T ss_pred --HH--HHHHHhCCCCCEEEEecCcccccccCCCCCHHH---------HHHHHHhchhHHHHHHhcCCcCHHH-------
Confidence 00 0011246778888774431 111100 0000113567777766555432211
Q ss_pred ceEecccCCcccccc-CCCCCcceEEcc--C----CCCCc-----cccccCCCCCCccEEEEccCCCccchhhhcCC-CC
Q 003435 618 NLALCNSNDKLVCSL-SRFPSLSSLVVD--N----FPELN-----CLSDKTGNLNSLVKLTVNECDNLESLFVFMQS-FS 684 (820)
Q Consensus 618 ~L~l~~~~~~~~~~~-~~l~~L~~L~l~--~----n~~~~-----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-l~ 684 (820)
...+ ..+++|+.|+++ + +.+.. .++..+..+++|+.|++++ .+.......+.. ++
T Consensus 389 -----------~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~ 456 (594)
T 2p1m_B 389 -----------LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAK 456 (594)
T ss_dssp -----------HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCT
T ss_pred -----------HHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhch
Confidence 1111 135566666666 2 22221 1122245567777777766 344433333333 67
Q ss_pred CcceEeeccCcccccCcccc-CCCCcccEEEecCCCCCCcccc-ccCCCCCccEEEeccCCCcccccccc-cCCCCcceE
Q 003435 685 SLRHLSILHCDKLESLPMSL-EKFCSLQKLDIVECPRLVHIPD-IMGQHSSLLELSIEGCPMLKLSLKSI-EFLGQLQRL 761 (820)
Q Consensus 685 ~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L 761 (820)
+|++|++++|.+.+..+..+ .++++|++|++++|++.+..+. ....+++|++|++++|++.......+ ..+++|+..
T Consensus 457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~ 536 (594)
T 2p1m_B 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVE 536 (594)
T ss_dssp TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEE
T ss_pred hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEE
Confidence 77777777777554433333 4577777888877776433322 33446778888888887643222222 345666554
Q ss_pred EEe
Q 003435 762 VIK 764 (820)
Q Consensus 762 ~l~ 764 (820)
.+.
T Consensus 537 ~~~ 539 (594)
T 2p1m_B 537 VID 539 (594)
T ss_dssp EEC
T ss_pred Eec
Confidence 444
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=7e-21 Score=193.21 Aligned_cols=209 Identities=13% Similarity=0.130 Sum_probs=168.3
Q ss_pred CCCcccEEEEcCCCCCC--CCCCCCCcCceEecccCCccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEcc
Q 003435 592 PFPCLEKLVVEGCSMLN--TLPFIRNLKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNE 669 (820)
Q Consensus 592 ~~~~L~~L~l~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 669 (820)
.+++|+.|++++|.+.. .+..+++|+.|++++|.......+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 34555566666554332 1223566666666666644445788899999999999999988888889999999999999
Q ss_pred CCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCccccc
Q 003435 670 CDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSL 749 (820)
Q Consensus 670 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 749 (820)
|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+..+..+++|++|++++|++.+..+
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 99887777778999999999999998877667778899999999999999888777778999999999999999999888
Q ss_pred ccccCCCCcceEEEeCCchhhHHHhccccCCCcccccCCceeEecCceeeeccCCCcccccchhh
Q 003435 750 KSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDPIAQMEVVSMTTLNLMADEVPTETDAGASLR 814 (820)
Q Consensus 750 ~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~l~l~~~n~~~~~~~~~~~~~~~L~ 814 (820)
..+..+++|++|++++|+-. ..++.++.+++.. |.++|.+|..++.++...
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~-------------~~~~~l~~l~~~~-n~~~g~ip~~~~~~~~~~ 249 (272)
T 3rfs_A 199 GVFDRLTSLQYIWLHDNPWD-------------CTCPGIRYLSEWI-NKHSGVVRNSAGSVAPDS 249 (272)
T ss_dssp TTTTTCTTCCEEECCSSCBC-------------CCTTTTHHHHHHH-HHTGGGBBCTTSCBCGGG
T ss_pred HHHhCCcCCCEEEccCCCcc-------------ccCcHHHHHHHHH-HhCCCcccCcccccCCCC
Confidence 88999999999999987522 2356788888888 889999998888776543
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=3.3e-21 Score=212.25 Aligned_cols=248 Identities=15% Similarity=0.128 Sum_probs=169.1
Q ss_pred CCCCCCcccc---cCCCCccEEEecccccCCCCC--CCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecCC
Q 003435 494 RGSVFPSWLN---SGVPNLVKVSLVDCTCQELPP--LGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFD 568 (820)
Q Consensus 494 ~~~~~~~~~~---~~l~~L~~L~L~~n~~~~l~~--l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 568 (820)
....+|..+. ..+++|+.|+|++|.++.+++ ++.+++|+.|+|++|.+....+ +..+++|++|++++
T Consensus 18 ~~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------l~~l~~L~~L~Ls~ 89 (487)
T 3oja_A 18 TDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--------LESLSTLRTLDLNN 89 (487)
T ss_dssp CTTTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--------CTTCTTCCEEECCS
T ss_pred chhhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--------cccCCCCCEEEecC
Confidence 3344444443 234589999999999988875 8999999999999998776542 34556666666655
Q ss_pred CcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCCCCCcCceEecccCCccccccCCCCCcceEEccCCCC
Q 003435 569 MPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPE 648 (820)
Q Consensus 569 ~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 648 (820)
+ .+..+. ..++|++|++++|.+.... ...+++|+.|++++|.+
T Consensus 90 N-~l~~l~---------------~~~~L~~L~L~~N~l~~~~---------------------~~~l~~L~~L~L~~N~l 132 (487)
T 3oja_A 90 N-YVQELL---------------VGPSIETLHAANNNISRVS---------------------CSRGQGKKNIYLANNKI 132 (487)
T ss_dssp S-EEEEEE---------------ECTTCCEEECCSSCCCCEE---------------------ECCCSSCEEEECCSSCC
T ss_pred C-cCCCCC---------------CCCCcCEEECcCCcCCCCC---------------------ccccCCCCEEECCCCCC
Confidence 4 122111 2244555555554433211 12457788888888888
Q ss_pred CccccccCCCCCCccEEEEccCCCccchhhhcC-CCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCCCccccc
Q 003435 649 LNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQ-SFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLVHIPDI 727 (820)
Q Consensus 649 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~ 727 (820)
.+..|..++.+++|++|++++|.+.+..|..+. .+++|++|++++|.+.+. | ....+++|++|+|++|.+.+..| .
T Consensus 133 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~-~ 209 (487)
T 3oja_A 133 TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-E 209 (487)
T ss_dssp CSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG-G
T ss_pred CCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCCCH-h
Confidence 888887888888888888888888877776654 688888888888886654 3 33458888888888887766444 4
Q ss_pred cCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCchhhHHHhccccCCCcccccCCceeEecC
Q 003435 728 MGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDPIAQMEVVSMTT 795 (820)
Q Consensus 728 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~l~l~~ 795 (820)
+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|+... +..+..+..++.|+.+++..
T Consensus 210 ~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c-----~~~~~~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 210 FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC-----GTLRDFFSKNQRVQTVAKQT 271 (487)
T ss_dssp GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCH-----HHHHHHHTTCHHHHHHHHHH
T ss_pred HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcC-----cchHHHHHhCCCCcEEeccc
Confidence 7778888888888888776 56677788888888888876442 11222334455566666653
No 77
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.84 E-value=5.2e-21 Score=217.51 Aligned_cols=211 Identities=23% Similarity=0.293 Sum_probs=162.2
Q ss_pred HHHHHHcCC--ceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchHHHhhhCCCCeEeC---CCCChHhHHHH
Q 003435 3 WKLEVYWRG--RGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGRVASMMGTVPTQHL---TCLSSEDSWVL 77 (820)
Q Consensus 3 ~~l~~~l~~--~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~~~~~~~~~~~~~l---~~l~~~~a~~L 77 (820)
+.+++.+.+ +++||||||||+. +.+ .++ ++|++||||||++.++..++ ...+++ ++|+.+||++|
T Consensus 225 ~~l~~~l~~~~~~~LLVLDdv~~~--~~l----~~l---~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L 294 (591)
T 1z6t_A 225 DRLRILMLRKHPRSLLILDDVWDS--WVL----KAF---DSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEI 294 (591)
T ss_dssp HHHHHHHHHTCTTCEEEEEEECCH--HHH----HTT---CSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHH
T ss_pred HHHHHHHccCCCCeEEEEeCCCCH--HHH----HHh---cCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHHHH
Confidence 345666655 7899999999862 222 233 67999999999999887654 235555 58999999999
Q ss_pred HHHHhcCCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhccCCHHHHHHhhhcchhchh--------ccCcchhhHHH
Q 003435 78 FKHFAFGSVEDESTELEEIGQKIVAKCKGLPIAIKTIGSILRSKDKEEWLSVADCDLWTLL--------EFKSHVLPVLK 149 (820)
Q Consensus 78 f~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~k~~~~w~~~~~~~~~~~~--------~~~~~i~~~l~ 149 (820)
|...++.. .+...+.+++|+++|+|+|+||.++|++++.+. ..|..++........ .....+..+++
T Consensus 295 ~~~~~~~~----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~ 369 (591)
T 1z6t_A 295 LSLFVNMK----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMS 369 (591)
T ss_dssp HHHHHTSC----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHH
T ss_pred HHHHhCCC----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHH
Confidence 99988642 123345789999999999999999999998875 367766543221110 01235889999
Q ss_pred hhhcCCChhHHHHHhhhcCCCCCcccCHHHHHHHHHHcCCcccCCCCCcHHHHHHHHHHHHhhcccccccccccCCcEEE
Q 003435 150 RSYDNLPWHLKQCFAYCSIFPKDYWINKEKLVRLWVAEGFIRLDSGSEDLEETADDYFMELLQHSFFDNIVRGIFGEVVM 229 (820)
Q Consensus 150 ~sy~~L~~~~k~~fl~~a~f~~~~~i~~~~li~~w~~~gl~~~~~~~~~~~~~~~~~l~~L~~~~li~~~~~~~~~~~~~ 229 (820)
.||+.|+++.|.||+++|+||+++.|+.+.+...|... .+.+.+++.+|++++++..... +...+
T Consensus 370 ~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll~~~~~---~~~~~ 434 (591)
T 1z6t_A 370 ISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLLFCDRN---GKSFR 434 (591)
T ss_dssp HHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSSEEEEE---TTEEE
T ss_pred HHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHhCcCeEEecC---CCccE
Confidence 99999999999999999999999999999999999422 3457889999999999984432 33467
Q ss_pred EEecchHHHHHHHh
Q 003435 230 CKVHDYIHFLAQLA 243 (820)
Q Consensus 230 ~~~h~~v~~~~~~~ 243 (820)
|+||+++++++...
T Consensus 435 ~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 435 YYLHDLQVDFLTEK 448 (591)
T ss_dssp EECCHHHHHHHHHH
T ss_pred EEEcHHHHHHHHhh
Confidence 99999999998766
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=2.8e-20 Score=190.04 Aligned_cols=203 Identities=19% Similarity=0.141 Sum_probs=163.5
Q ss_pred CcccCCCCccEEEeecccccccCccccCCceeEEEEeCCCCCccc-CccccCcccccEEeccCccccccccccccCCccc
Q 003435 275 STIPRARKLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKL-PDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQ 353 (820)
Q Consensus 275 ~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~ 353 (820)
..+..+++++.++++++.++.+|..+. +++++|+|++|.+..+ |..|..+++|++|+|++|.|+.+|.. +.+++|+
T Consensus 4 C~~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 4 CEVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG 80 (290)
T ss_dssp SEEECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred ccccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence 346788899999999999999987754 6899999999999977 46799999999999999999988764 8899999
Q ss_pred EEeccCCCCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecc
Q 003435 354 TLDLSNCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKN 433 (820)
Q Consensus 354 ~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 433 (820)
+|++++|.+ ..+|..+..+++|++|++++|.+.+..|..|..+++|+.|++..+.+...+
T Consensus 81 ~L~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~------------------- 140 (290)
T 1p9a_G 81 TLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP------------------- 140 (290)
T ss_dssp EEECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-------------------
T ss_pred EEECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC-------------------
Confidence 999999765 478888899999999999999876666667877777777755444322111
Q ss_pred cCCCCChhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEE
Q 003435 434 LENLKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVS 513 (820)
Q Consensus 434 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 513 (820)
...+..+++|+.|++++|.++.+|..++..+++|+.|+
T Consensus 141 ------------------------------------------~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 178 (290)
T 1p9a_G 141 ------------------------------------------PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178 (290)
T ss_dssp ------------------------------------------TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred ------------------------------------------hhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEE
Confidence 12244567888899999998888888777888999999
Q ss_pred ecccccCCCCC-CCCCCCCcceeeccCcCc
Q 003435 514 LVDCTCQELPP-LGQLPNLKDLYVKGMSAV 542 (820)
Q Consensus 514 L~~n~~~~l~~-l~~l~~L~~L~L~~n~~~ 542 (820)
+++|.++.+|. +...++|+.+++++|++.
T Consensus 179 L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 179 LQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 99998888887 777788999999888653
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=2.5e-19 Score=181.68 Aligned_cols=200 Identities=16% Similarity=0.152 Sum_probs=121.9
Q ss_pred CCcEEEEecCCCCCCCcccccCCCCccEEEecccccCCCCC--CCCCCCCcceeeccCcCceEeCccccCCCcccCCCCc
Q 003435 484 NLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELPP--LGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSL 561 (820)
Q Consensus 484 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~--l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L 561 (820)
+.+.++++++.++.+|..+. +++++|++++|.++.++. ++.+++|++|++++|.+..+.
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~---------------- 77 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP---------------- 77 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC----------------
T ss_pred CCCEEEccCCCCCccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC----------------
Confidence 46677777777777776543 567777777777776665 666777777777666543221
Q ss_pred ceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCCCCCcCceEecccCCccccccCCCCCcceE
Q 003435 562 KLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFPSLSSL 641 (820)
Q Consensus 562 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L 641 (820)
+..+..+++|++|++++|.+....+ ..+..+++|++|
T Consensus 78 -------------------------~~~~~~l~~L~~L~l~~n~l~~~~~------------------~~~~~l~~L~~L 114 (270)
T 2o6q_A 78 -------------------------AGIFKELKNLETLWVTDNKLQALPI------------------GVFDQLVNLAEL 114 (270)
T ss_dssp -------------------------TTTTSSCTTCCEEECCSSCCCCCCT------------------TTTTTCSSCCEE
T ss_pred -------------------------hhhhcCCCCCCEEECCCCcCCcCCH------------------hHcccccCCCEE
Confidence 1112245556666666665433221 134556667777
Q ss_pred EccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCC
Q 003435 642 VVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRL 721 (820)
Q Consensus 642 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~ 721 (820)
++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence 77776666666666666666666666666655544445666666666666666655544445666666666666666665
Q ss_pred CccccccCCCCCccEEEeccCCCc
Q 003435 722 VHIPDIMGQHSSLLELSIEGCPML 745 (820)
Q Consensus 722 ~~~~~~~~~l~~L~~L~l~~n~~~ 745 (820)
+..+..+..+++|+.|++++|++.
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 195 RVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCHHHhccccCCCEEEecCCCee
Confidence 544455666666666666666643
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.83 E-value=6.9e-20 Score=186.70 Aligned_cols=54 Identities=15% Similarity=0.050 Sum_probs=34.1
Q ss_pred EEEecCCCCCCCcccccCCCCccEEEecccccCCCCC--CCCCCCCcceeeccCcCceE
Q 003435 488 LDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELPP--LGQLPNLKDLYVKGMSAVQI 544 (820)
Q Consensus 488 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~--l~~l~~L~~L~L~~n~~~~~ 544 (820)
++..+..+..+|..+. ++|++|++++|.++.++. ++.+++|+.|++++|.+..+
T Consensus 12 ~~c~~~~l~~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 67 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67 (276)
T ss_dssp EECTTSCCSSCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE
T ss_pred EEecCCCccccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc
Confidence 3334445556665432 467777777777766664 67777777777777765544
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.4e-19 Score=183.53 Aligned_cols=201 Identities=13% Similarity=0.122 Sum_probs=170.2
Q ss_pred CcccEEEEcCCCCCCCCCC--CCCcCceEecccCC--ccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEcc
Q 003435 594 PCLEKLVVEGCSMLNTLPF--IRNLKNLALCNSND--KLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNE 669 (820)
Q Consensus 594 ~~L~~L~l~~~~~~~~~~~--l~~L~~L~l~~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 669 (820)
...+.++++++.+.. +|. .++++.|++++|.. ..+..+..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCCEEEccCCCCCc-cCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 357889999987664 553 45799999999983 3334688999999999999998887777789999999999999
Q ss_pred CCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCccccc
Q 003435 670 CDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSL 749 (820)
Q Consensus 670 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 749 (820)
|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 98887666688999999999999999888777788999999999999998887767778999999999999999998888
Q ss_pred ccccCCCCcceEEEeCCchhhHHHhccccCCCcccccCCceeEecCceeeecc
Q 003435 750 KSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDPIAQMEVVSMTTLNLMADE 802 (820)
Q Consensus 750 ~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~l~l~~~n~~~~~ 802 (820)
..|..+++|++|++++| .+....+..+..+++|+.|++++ |.+...
T Consensus 175 ~~~~~l~~L~~L~L~~N------~l~~~~~~~~~~l~~L~~L~l~~-N~~~c~ 220 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNN------QLKRVPEGAFDSLEKLKMLQLQE-NPWDCT 220 (270)
T ss_dssp TTTTTCTTCCEEECCSS------CCSCCCTTTTTTCTTCCEEECCS-SCBCCS
T ss_pred hHhccCCCcCEEECCCC------cCCcCCHHHhccccCCCEEEecC-CCeeCC
Confidence 88999999999999986 34455566688899999999999 766544
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.82 E-value=1e-19 Score=184.67 Aligned_cols=117 Identities=12% Similarity=0.030 Sum_probs=59.0
Q ss_pred cCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCccc
Q 003435 632 LSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQ 711 (820)
Q Consensus 632 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 711 (820)
+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+
T Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence 34455555555555555544444445555555555555554444333445555555555555554444444445555555
Q ss_pred EEEecCCCCCCccccccCCCCCccEEEeccCCCcccccccccCC
Q 003435 712 KLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFL 755 (820)
Q Consensus 712 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 755 (820)
+|++++|++.+ .+++|+.|+++.|.+.+.+|..++.+
T Consensus 209 ~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 209 YIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp EEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred EEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCccccc
Confidence 55555554332 23345555555555555555444443
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=1.1e-19 Score=185.32 Aligned_cols=201 Identities=16% Similarity=0.122 Sum_probs=153.1
Q ss_pred CcccEEEEcCCCCCCC----CCCCCCcCceEecccCCc--cccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEE
Q 003435 594 PCLEKLVVEGCSMLNT----LPFIRNLKNLALCNSNDK--LVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTV 667 (820)
Q Consensus 594 ~~L~~L~l~~~~~~~~----~~~l~~L~~L~l~~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 667 (820)
++|++|++++|.+... +..+++|+.|++++|... .+..+..+++|++|++++|.+.+..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 4699999999977543 334778888888888732 2335788888888888888888877778888888888888
Q ss_pred ccCCCccchhhhcCCCCCcceEeeccCcccc-cCccccCCCCcccEEEecCCCCCCccccccCCCCCcc----EEEeccC
Q 003435 668 NECDNLESLFVFMQSFSSLRHLSILHCDKLE-SLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLL----ELSIEGC 742 (820)
Q Consensus 668 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~----~L~l~~n 742 (820)
++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|++.+..+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 8887777665578888888888888888765 3577888888888888888888777666666666666 8888888
Q ss_pred CCcccccccccCCCCcceEEEeCCchhhHHHhccccCCCcccccCCceeEecCceeeecc
Q 003435 743 PMLKLSLKSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDPIAQMEVVSMTTLNLMADE 802 (820)
Q Consensus 743 ~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~l~l~~~n~~~~~ 802 (820)
.+.+..+..+.. .+|++|++++|. +....+..+..+++|+.+++++ |.+++.
T Consensus 188 ~l~~~~~~~~~~-~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~l~~-N~~~c~ 239 (276)
T 2z62_A 188 PMNFIQPGAFKE-IRLKELALDTNQ------LKSVPDGIFDRLTSLQKIWLHT-NPWDCS 239 (276)
T ss_dssp CCCEECTTSSCS-CCEEEEECCSSC------CSCCCTTTTTTCCSCCEEECCS-SCBCCC
T ss_pred cccccCccccCC-CcccEEECCCCc------eeecCHhHhcccccccEEEccC-Cccccc
Confidence 887766555544 478888888753 4445555667788888888888 766654
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=6.4e-19 Score=179.98 Aligned_cols=200 Identities=16% Similarity=0.083 Sum_probs=139.2
Q ss_pred CCCCCCcEEEEecCCCCCCCcccccCCCCccEEEecccccCCCCC--CCCCCCCcceeeccCcCceEeCccccCCCcccC
Q 003435 480 RPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELPP--LGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRG 557 (820)
Q Consensus 480 ~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~--l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~ 557 (820)
..+++++.++++++.++.+|..++ ++++.|++++|.++.+++ +..+++|+.|++++|.+..+...
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------- 73 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD---------- 73 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC----------
T ss_pred cccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC----------
Confidence 345567777777777777776543 567777777777666653 66777777777777665443210
Q ss_pred CCCcceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCCCCCcCceEecccCCccccccCCCCC
Q 003435 558 FPSLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFPS 637 (820)
Q Consensus 558 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~ 637 (820)
..+++|++|++++|.+. .+| ..+..+++
T Consensus 74 ---------------------------------~~l~~L~~L~Ls~N~l~-~l~------------------~~~~~l~~ 101 (290)
T 1p9a_G 74 ---------------------------------GTLPVLGTLDLSHNQLQ-SLP------------------LLGQTLPA 101 (290)
T ss_dssp ---------------------------------SCCTTCCEEECCSSCCS-SCC------------------CCTTTCTT
T ss_pred ---------------------------------CCCCcCCEEECCCCcCC-cCc------------------hhhccCCC
Confidence 14566777777776543 222 24556777
Q ss_pred cceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecC
Q 003435 638 LSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVE 717 (820)
Q Consensus 638 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~ 717 (820)
|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+..+..+++|++|+|++
T Consensus 102 L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181 (290)
T ss_dssp CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCC
Confidence 88888888887777777788888888888888877766555677788888888888876655555567788888888888
Q ss_pred CCCCCccccccCCCCCccEEEeccCCCc
Q 003435 718 CPRLVHIPDIMGQHSSLLELSIEGCPML 745 (820)
Q Consensus 718 n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 745 (820)
|++. .+|..+..+++|+.|++++|++.
T Consensus 182 N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 182 NSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 8665 56666777778888888888754
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=1.8e-19 Score=186.06 Aligned_cols=195 Identities=20% Similarity=0.250 Sum_probs=147.9
Q ss_pred ccCCCCccEEEeecccccccCccccCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEEe
Q 003435 277 IPRARKLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLD 356 (820)
Q Consensus 277 ~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~ 356 (820)
...+++|+.|++++|.+..++ .+..+++|++|++++|.+..++. +..+++|++|+|++|.++.+| .+..+++|++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 446778888888888888876 57888889999999888888876 888888999999998888876 588888899999
Q ss_pred ccCCCCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCC
Q 003435 357 LSNCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLEN 436 (820)
Q Consensus 357 L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~ 436 (820)
+++|.+.+ +|. ++.+++|++|++++|.+.+..+ +..+++|+.|++..+.+.
T Consensus 114 l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~------------------------- 164 (308)
T 1h6u_A 114 LTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS------------------------- 164 (308)
T ss_dssp CTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-------------------------
T ss_pred CCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC-------------------------
Confidence 98877554 444 8888889999988887544322 555555555544332211
Q ss_pred CCChhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEecc
Q 003435 437 LKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVD 516 (820)
Q Consensus 437 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 516 (820)
.. ..+..+++|+.|++++|.++.++. +..+++|+.|++++
T Consensus 165 -----------------------------~~---------~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~ 204 (308)
T 1h6u_A 165 -----------------------------DL---------TPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKN 204 (308)
T ss_dssp -----------------------------CC---------GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTT
T ss_pred -----------------------------CC---------hhhcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccC
Confidence 10 014456788888998888888776 35688999999999
Q ss_pred cccCCCCCCCCCCCCcceeeccCcCce
Q 003435 517 CTCQELPPLGQLPNLKDLYVKGMSAVQ 543 (820)
Q Consensus 517 n~~~~l~~l~~l~~L~~L~L~~n~~~~ 543 (820)
|.++.++++..+++|+.|++++|++..
T Consensus 205 N~l~~~~~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 205 NQISDVSPLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp SCCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred CccCccccccCCCCCCEEEccCCeeec
Confidence 988888888889999999999887654
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=1.5e-18 Score=172.57 Aligned_cols=205 Identities=17% Similarity=0.121 Sum_probs=131.5
Q ss_pred CCCCCcccccCCCCccEEEecccccCCCCC--CCCCCCCcceeeccCc-CceEeCccccCCCcccCCCCcceeecCCCcc
Q 003435 495 GSVFPSWLNSGVPNLVKVSLVDCTCQELPP--LGQLPNLKDLYVKGMS-AVQIIGYKFYGNDAIRGFPSLKLLQLFDMPN 571 (820)
Q Consensus 495 ~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~--l~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 571 (820)
++.+|. + .++|+.|++++|.++.+++ ++.+++|+.|++++|. +..+...
T Consensus 23 l~~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~------------------------ 74 (239)
T 2xwt_C 23 IQRIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH------------------------ 74 (239)
T ss_dssp CSSCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTT------------------------
T ss_pred ccccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHh------------------------
Confidence 555665 2 2467777777777777665 6677777777777775 4433211
Q ss_pred cccccccccCCCccCCCCCCCCCcccEEEEcC-CCCCCCCCCCCCcCceEecccCCccccccCCCCCcceEEccCCCCCc
Q 003435 572 LMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEG-CSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPELN 650 (820)
Q Consensus 572 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 650 (820)
.+..+++|++|++++ |.+.. ++ +..|..+++|++|++++|.+.+
T Consensus 75 -----------------~f~~l~~L~~L~l~~~n~l~~-i~-----------------~~~f~~l~~L~~L~l~~n~l~~ 119 (239)
T 2xwt_C 75 -----------------SFYNLSKVTHIEIRNTRNLTY-ID-----------------PDALKELPLLKFLGIFNTGLKM 119 (239)
T ss_dssp -----------------TEESCTTCCEEEEEEETTCCE-EC-----------------TTSEECCTTCCEEEEEEECCCS
T ss_pred -----------------HcCCCcCCcEEECCCCCCeeE-cC-----------------HHHhCCCCCCCEEeCCCCCCcc
Confidence 111445566666665 33221 11 1245566777777777777665
Q ss_pred cccccCCCCCCcc---EEEEccC-CCccchhhhcCCCCCcc-eEeeccCcccccCccccCCCCcccEEEecCCC-CCCcc
Q 003435 651 CLSDKTGNLNSLV---KLTVNEC-DNLESLFVFMQSFSSLR-HLSILHCDKLESLPMSLEKFCSLQKLDIVECP-RLVHI 724 (820)
Q Consensus 651 ~~~~~~~~l~~L~---~L~L~~n-~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~-~~~~~ 724 (820)
+|. +..+++|+ +|++++| .+.+..+..+..+++|+ +|++++|.+. .+|......++|++|++++|+ +.+..
T Consensus 120 -lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~ 196 (239)
T 2xwt_C 120 -FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVID 196 (239)
T ss_dssp -CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEEC
T ss_pred -ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCC
Confidence 444 66777777 8888888 55554445677888888 8888888765 444433333788888888885 65555
Q ss_pred ccccCCC-CCccEEEeccCCCcccccccccCCCCcceEEEeCCch
Q 003435 725 PDIMGQH-SSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCPQ 768 (820)
Q Consensus 725 ~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~ 768 (820)
+..|..+ ++|+.|++++|++.+..+. .+++|+.|+++++..
T Consensus 197 ~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 197 KDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTWT 238 (239)
T ss_dssp TTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC--
T ss_pred HHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCccC
Confidence 5677778 8888888888887764433 567788888877654
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=1e-18 Score=173.75 Aligned_cols=194 Identities=13% Similarity=0.075 Sum_probs=140.4
Q ss_pred CcCceEecccCC--ccccccCCCCCcceEEccCCC-CCccccccCCCCCCccEEEEcc-CCCccchhhhcCCCCCcceEe
Q 003435 615 NLKNLALCNSND--KLVCSLSRFPSLSSLVVDNFP-ELNCLSDKTGNLNSLVKLTVNE-CDNLESLFVFMQSFSSLRHLS 690 (820)
Q Consensus 615 ~L~~L~l~~~~~--~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~ 690 (820)
+++.|++++|.. ..+..+..+++|++|++++|. +....+..|.++++|++|++++ |.+.+..+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 344444444441 112257788889999999887 6666666788888999999988 766665556788888999999
Q ss_pred eccCcccccCccccCCCCccc---EEEecCC-CCCCccccccCCCCCcc-EEEeccCCCcccccccccCCCCcceEEEeC
Q 003435 691 ILHCDKLESLPMSLEKFCSLQ---KLDIVEC-PRLVHIPDIMGQHSSLL-ELSIEGCPMLKLSLKSIEFLGQLQRLVIKK 765 (820)
Q Consensus 691 l~~n~~~~~~~~~l~~l~~L~---~L~L~~n-~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 765 (820)
+++|.+.+ +|. +..+++|+ +|++++| .+.+..+..|.++++|+ +|++++|.+....+..+.. ++|++|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 99888655 665 77788887 9999998 66665556688888999 9999999887554545555 7899998888
Q ss_pred CchhhHHHhccccCCCcccc-cCCceeEecCceeeeccCCCcccccchhhhhhcCC
Q 003435 766 CPQLERQRLMNALHESFDPI-AQMEVVSMTTLNLMADEVPTETDAGASLREKNKHG 820 (820)
Q Consensus 766 ~~~L~~~~~~~~~~~~~~~l-~~L~~l~l~~~n~~~~~~~~~~~~~~~L~~L~L~~ 820 (820)
|+.+ ....+..|..+ ++|+.|++++ |.+++..+. .+++|+.|++++
T Consensus 189 n~~l-----~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~---~~~~L~~L~l~~ 235 (239)
T 2xwt_C 189 NKYL-----TVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK---GLEHLKELIARN 235 (239)
T ss_dssp CTTC-----CEECTTTTTTCSBCCSEEECTT-CCCCCCCCT---TCTTCSEEECTT
T ss_pred CCCc-----ccCCHHHhhccccCCcEEECCC-CccccCChh---HhccCceeeccC
Confidence 6433 34556677788 8899999988 777765444 456666666653
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=2.4e-20 Score=196.38 Aligned_cols=255 Identities=14% Similarity=0.144 Sum_probs=178.3
Q ss_pred CCCcEEEEecCCCCCCCcccccCC--CCccEEEecccccCCCCC-CCCCCCCcceeeccCcCceEeCccccCCCcccCCC
Q 003435 483 HNLKVLDLKGYRGSVFPSWLNSGV--PNLVKVSLVDCTCQELPP-LGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFP 559 (820)
Q Consensus 483 ~~L~~L~L~~n~~~~~~~~~~~~l--~~L~~L~L~~n~~~~l~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~ 559 (820)
..++.++++++.+. + ..+..+ ++++.|++++|.+...++ +..+++|+.|++++|.+....
T Consensus 47 ~~~~~l~l~~~~~~--~-~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~-------------- 109 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--P-DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST-------------- 109 (336)
T ss_dssp TTSSEEECTTCBCC--H-HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHH--------------
T ss_pred hhheeeccccccCC--H-HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHH--------------
Confidence 45778888877654 2 222334 778888888887666554 667788888888777532210
Q ss_pred CcceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCCCCCcCceEecccCCccccccCCCCCcc
Q 003435 560 SLKLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFPSLS 639 (820)
Q Consensus 560 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~ 639 (820)
++..+..+++|++|++++|.+... .+..+..+++|+
T Consensus 110 --------------------------~~~~~~~~~~L~~L~L~~~~l~~~------------------~~~~l~~~~~L~ 145 (336)
T 2ast_B 110 --------------------------LHGILSQCSKLQNLSLEGLRLSDP------------------IVNTLAKNSNLV 145 (336)
T ss_dssp --------------------------HHHHHTTBCCCSEEECTTCBCCHH------------------HHHHHTTCTTCS
T ss_pred --------------------------HHHHHhhCCCCCEEeCcCcccCHH------------------HHHHHhcCCCCC
Confidence 001111456677777776653322 223566688889
Q ss_pred eEEccCC-CCCc-cccccCCCCCCccEEEEccC-CCccc-hhhhcCCCC-CcceEeeccCc--cc-ccCccccCCCCccc
Q 003435 640 SLVVDNF-PELN-CLSDKTGNLNSLVKLTVNEC-DNLES-LFVFMQSFS-SLRHLSILHCD--KL-ESLPMSLEKFCSLQ 711 (820)
Q Consensus 640 ~L~l~~n-~~~~-~~~~~~~~l~~L~~L~L~~n-~~~~~-~~~~~~~l~-~L~~L~l~~n~--~~-~~~~~~l~~l~~L~ 711 (820)
+|++++| .+.+ .++..+.++++|++|++++| .+.+. ++..+..++ +|++|++++|. +. +.+|..+..+++|+
T Consensus 146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 225 (336)
T 2ast_B 146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 225 (336)
T ss_dssp EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCC
Confidence 9999888 4554 35666778899999999999 66543 566778888 99999999984 33 45666777889999
Q ss_pred EEEecCCC-CCCccccccCCCCCccEEEeccCC-CcccccccccCCCCcceEEEeCCchhhHHHhccccCCCccccc-CC
Q 003435 712 KLDIVECP-RLVHIPDIMGQHSSLLELSIEGCP-MLKLSLKSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDPIA-QM 788 (820)
Q Consensus 712 ~L~L~~n~-~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~-~L 788 (820)
+|++++|. +.+..+..+..+++|++|++++|. +.......+..+++|++|++++| +. ...+..+. .+
T Consensus 226 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~--------~~~~~~l~~~l 295 (336)
T 2ast_B 226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VP--------DGTLQLLKEAL 295 (336)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SC--------TTCHHHHHHHS
T ss_pred EEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--cC--------HHHHHHHHhhC
Confidence 99999998 556677788889999999999996 22222235778999999999987 32 44555554 48
Q ss_pred ceeEecCceeeeccCCCcccc
Q 003435 789 EVVSMTTLNLMADEVPTETDA 809 (820)
Q Consensus 789 ~~l~l~~~n~~~~~~~~~~~~ 809 (820)
+.|++++ |.+++..|..++.
T Consensus 296 ~~L~l~~-n~l~~~~~~~~~~ 315 (336)
T 2ast_B 296 PHLQINC-SHFTTIARPTIGN 315 (336)
T ss_dssp TTSEESC-CCSCCTTCSSCSS
T ss_pred cceEEec-ccCccccCCcccc
Confidence 8888877 8899988887764
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=6.8e-18 Score=178.00 Aligned_cols=67 Identities=21% Similarity=0.306 Sum_probs=30.6
Q ss_pred EEeCCCCCcccCccccCcccccEEeccCccccccc-cccccCCcccEEeccCCCCccccch-hccCCCCCc
Q 003435 309 LDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIP-GSISKLKHLQTLDLSNCYNLEELPK-GICQLTNLR 377 (820)
Q Consensus 309 L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~~~~L~~L~~L~L~~n~~~~~lp~-~~~~l~~L~ 377 (820)
++.++++++++|..+ .+++++|+|++|.|++|| .+|.++++|++|+|++|.+.+.+|. .|.++++|+
T Consensus 14 v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~ 82 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH 82 (350)
T ss_dssp EEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred EEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhh
Confidence 444444444444433 134455555555555554 2344555555555555444444332 234444443
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.76 E-value=3.8e-20 Score=198.62 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=81.2
Q ss_pred cCCCCCcceEEccCCCCCc-----cccccCCCCCCccEEEEccCCCc----cchhhhcCCCCCcceEeeccCccccc---
Q 003435 632 LSRFPSLSSLVVDNFPELN-----CLSDKTGNLNSLVKLTVNECDNL----ESLFVFMQSFSSLRHLSILHCDKLES--- 699 (820)
Q Consensus 632 ~~~l~~L~~L~l~~n~~~~-----~~~~~~~~l~~L~~L~L~~n~~~----~~~~~~~~~l~~L~~L~l~~n~~~~~--- 699 (820)
+..+++|++|++++|.+.. ..+..+..+++|++|+|++|.+. ..++..+..+++|++|+|++|.+.+.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 3455667777777776652 23335667777888888887764 55666777778888888888876554
Q ss_pred -Ccccc--CCCCcccEEEecCCCCCC----cccccc-CCCCCccEEEeccCCCcccc
Q 003435 700 -LPMSL--EKFCSLQKLDIVECPRLV----HIPDIM-GQHSSLLELSIEGCPMLKLS 748 (820)
Q Consensus 700 -~~~~l--~~l~~L~~L~L~~n~~~~----~~~~~~-~~l~~L~~L~l~~n~~~~~~ 748 (820)
+|..+ +.+++|++|+|++|++.. .+|..+ .++++|++|++++|++.+..
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 45555 337788888888887776 466665 55788888888888877654
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.76 E-value=1.1e-17 Score=167.44 Aligned_cols=171 Identities=13% Similarity=0.106 Sum_probs=136.1
Q ss_pred ccEEEEcCCCCCCCCCC--CCCcCceEecccC--CccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCC
Q 003435 596 LEKLVVEGCSMLNTLPF--IRNLKNLALCNSN--DKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECD 671 (820)
Q Consensus 596 L~~L~l~~~~~~~~~~~--l~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 671 (820)
.+.++++++.+.. +|. .++++.|++++|. ...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 16 ~~~l~~~~~~l~~-~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 16 KKEVDCQGKSLDS-VPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp GTEEECTTCCCSS-CCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CeEEecCCCCccc-cCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence 4455555554332 222 3456666666665 2333467888999999999999988888888999999999999998
Q ss_pred CccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCccccccc
Q 003435 672 NLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKS 751 (820)
Q Consensus 672 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 751 (820)
+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+|++|.+.+..+..|..+++|++|++++|++.+..+..
T Consensus 95 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 174 (251)
T 3m19_A 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHH
Confidence 88776678889999999999999877666666788999999999999888777777888999999999999998888888
Q ss_pred ccCCCCcceEEEeCCc
Q 003435 752 IEFLGQLQRLVIKKCP 767 (820)
Q Consensus 752 ~~~l~~L~~L~l~~~~ 767 (820)
+..+++|++|++++|+
T Consensus 175 ~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 175 FDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTCTTCCEEECCSCC
T ss_pred HhCCCCCCEEEeeCCc
Confidence 8899999999998875
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=6.2e-18 Score=174.56 Aligned_cols=191 Identities=15% Similarity=0.190 Sum_probs=131.8
Q ss_pred CCCcEEEEecCCCCCCCcccccCCCCccEEEecccccCCCCCCCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcc
Q 003435 483 HNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELPPLGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLK 562 (820)
Q Consensus 483 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~ 562 (820)
++|+.|+++++.+..++. +..+++|+.|++++|.++.+++++.+++|+.|++++|.+....
T Consensus 41 ~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~----------------- 101 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS----------------- 101 (308)
T ss_dssp HTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-----------------
T ss_pred CCcCEEEeeCCCccCchh--hhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch-----------------
Confidence 456666666666666553 2346666666666666666655666666666666665432210
Q ss_pred eeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCCCCCcCceEecccCCccccccCCCCCcceEE
Q 003435 563 LLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFPSLSSLV 642 (820)
Q Consensus 563 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~ 642 (820)
.+..+++|++|++++|.+.. + ..+..+++|++|+
T Consensus 102 --------------------------~~~~l~~L~~L~l~~n~l~~-~-------------------~~l~~l~~L~~L~ 135 (308)
T 1h6u_A 102 --------------------------AIAGLQSIKTLDLTSTQITD-V-------------------TPLAGLSNLQVLY 135 (308)
T ss_dssp --------------------------GGTTCTTCCEEECTTSCCCC-C-------------------GGGTTCTTCCEEE
T ss_pred --------------------------hhcCCCCCCEEECCCCCCCC-c-------------------hhhcCCCCCCEEE
Confidence 01145666666666665432 1 2467788899999
Q ss_pred ccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCCC
Q 003435 643 VDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLV 722 (820)
Q Consensus 643 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~ 722 (820)
+++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+. +. +..+++|++|++++|++.+
T Consensus 136 l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 136 LDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp CCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCCccCc
Confidence 99998876554 7788899999999987765433 78889999999999886543 32 7788899999999998776
Q ss_pred ccccccCCCCCccEEEeccCCCcc
Q 003435 723 HIPDIMGQHSSLLELSIEGCPMLK 746 (820)
Q Consensus 723 ~~~~~~~~l~~L~~L~l~~n~~~~ 746 (820)
..+ +..+++|+.|++++|++.+
T Consensus 210 ~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 210 VSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CGG--GTTCTTCCEEEEEEEEEEC
T ss_pred ccc--ccCCCCCCEEEccCCeeec
Confidence 543 7888999999999998765
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=1.3e-17 Score=166.90 Aligned_cols=179 Identities=13% Similarity=0.132 Sum_probs=154.7
Q ss_pred CcCceEecccC-CccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeecc
Q 003435 615 NLKNLALCNSN-DKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILH 693 (820)
Q Consensus 615 ~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 693 (820)
+.+.++++++. ...+..+. ++++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45677777776 34444443 6899999999999998888999999999999999998888777899999999999999
Q ss_pred CcccccCccccCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCchhhHHH
Q 003435 694 CDKLESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCPQLERQR 773 (820)
Q Consensus 694 n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~ 773 (820)
|.+.+..+..+..+++|++|+|++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++| .
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N------~ 166 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN------Q 166 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS------C
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC------c
Confidence 9988777778899999999999999988777777899999999999999999887778999999999999985 4
Q ss_pred hccccCCCcccccCCceeEecCceeeecc
Q 003435 774 LMNALHESFDPIAQMEVVSMTTLNLMADE 802 (820)
Q Consensus 774 ~~~~~~~~~~~l~~L~~l~l~~~n~~~~~ 802 (820)
+....+..+..+++|+.|++++ |.+++.
T Consensus 167 l~~~~~~~~~~l~~L~~L~l~~-N~~~c~ 194 (251)
T 3m19_A 167 LQSVPHGAFDRLGKLQTITLFG-NQFDCS 194 (251)
T ss_dssp CSCCCTTTTTTCTTCCEEECCS-CCBCTT
T ss_pred CCccCHHHHhCCCCCCEEEeeC-CceeCC
Confidence 5566667888999999999999 777765
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.74 E-value=2e-19 Score=193.07 Aligned_cols=103 Identities=19% Similarity=0.147 Sum_probs=66.7
Q ss_pred cEEEeecccccccCccccCCceeEEEEeCCCCCcc-----cCccccCcccccEEeccCcccc----cccccc-------c
Q 003435 284 RTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIK-----LPDSIGTLKHLRYLDLSHTYIR----KIPGSI-------S 347 (820)
Q Consensus 284 ~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~i~----~lp~~~-------~ 347 (820)
+...+....+..++..+..+++|++|+|++|.+.. ++..+..+++|++|+|++|.+. .+|..+ .
T Consensus 12 ~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~ 91 (386)
T 2ca6_A 12 KLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL 91 (386)
T ss_dssp EESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHT
T ss_pred ccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHh
Confidence 33334444555565556667777788887777763 3344667777888888776544 234333 5
Q ss_pred cCCcccEEeccCCCCcc----ccchhccCCCCCcEEecCCCCC
Q 003435 348 KLKHLQTLDLSNCYNLE----ELPKGICQLTNLRTLDISSCYS 386 (820)
Q Consensus 348 ~L~~L~~L~L~~n~~~~----~lp~~~~~l~~L~~L~L~~n~~ 386 (820)
.+++|++|+|++|.+.. .+|..+..+++|++|+|++|.+
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 67777777777776655 4666677777777777777754
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=4.5e-17 Score=171.65 Aligned_cols=239 Identities=16% Similarity=0.104 Sum_probs=161.5
Q ss_pred cEEEEecCCCCCCCcccccCCCCccEEEecccccCCCCC--CCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcce
Q 003435 486 KVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELPP--LGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKL 563 (820)
Q Consensus 486 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~--l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~ 563 (820)
++++.+++.++.+|..+ .+++++|+|++|.++.+|. |+++++|+.|+|++|.+.+.++. ..+..++++.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~-----~~f~~L~~l~~ 83 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA-----DVFSNLPKLHE 83 (350)
T ss_dssp TEEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECT-----TSBCSCTTCCE
T ss_pred CEEEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh-----hHhhcchhhhh
Confidence 46777888888888765 3688999999999999886 88999999999999987665432 22345555555
Q ss_pred eecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCCCCCcCceEecccCCccccccCCCCCcceEEc
Q 003435 564 LQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFPSLSSLVV 643 (820)
Q Consensus 564 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l 643 (820)
+...+..++..+ .++.+..+++|++|++++|.+....+. .+....++..|++
T Consensus 84 ~l~~~~N~l~~l----------~~~~f~~l~~L~~L~l~~n~l~~~~~~------------------~~~~~~~l~~l~l 135 (350)
T 4ay9_X 84 IRIEKANNLLYI----------NPEAFQNLPNLQYLLISNTGIKHLPDV------------------HKIHSLQKVLLDI 135 (350)
T ss_dssp EEEEEETTCCEE----------CTTSBCCCTTCCEEEEEEECCSSCCCC------------------TTCCBSSCEEEEE
T ss_pred hhcccCCccccc----------CchhhhhccccccccccccccccCCch------------------hhcccchhhhhhh
Confidence 444443333332 234444667777777777755432221 2334456777888
Q ss_pred cCCC-CCccccccCCCCC-CccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCcc-ccCCCCcccEEEecCCCC
Q 003435 644 DNFP-ELNCLSDKTGNLN-SLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPM-SLEKFCSLQKLDIVECPR 720 (820)
Q Consensus 644 ~~n~-~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~L~~n~~ 720 (820)
.++. +....+..|..++ .++.|++++|.+.. ++.......+|++|++++|+.++.+|. .|.++++|++|++++|++
T Consensus 136 ~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 136 QDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214 (350)
T ss_dssp ESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC
T ss_pred ccccccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc
Confidence 6654 4444444566654 58888999887665 444444567888899887666777764 578889999999999876
Q ss_pred CCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeC
Q 003435 721 LVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKK 765 (820)
Q Consensus 721 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 765 (820)
....+.. +.+|+.|.+.++...+.+| .+.++++|+.+++.+
T Consensus 215 ~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 215 HSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp CCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred CccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 5443333 5667777777777677676 377888888888864
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.74 E-value=5e-18 Score=175.91 Aligned_cols=229 Identities=18% Similarity=0.098 Sum_probs=136.3
Q ss_pred CCCccEEEeecccccccC--c--cccCCceeEEEEeCCCCCcc-cCccc--cCcccccEEeccCcccccc-c----cccc
Q 003435 280 ARKLRTLLFLTVKMENLS--F--PCQEFQCLRVLDLGQSGIIK-LPDSI--GTLKHLRYLDLSHTYIRKI-P----GSIS 347 (820)
Q Consensus 280 ~~~L~~L~l~~n~~~~l~--~--~~~~l~~L~~L~L~~n~l~~-lp~~~--~~l~~L~~L~Ls~n~i~~l-p----~~~~ 347 (820)
...++.+.+.++.+..-. . .+..+++|++|++++|.+.. .|..+ ..+++|++|+|++|.++.. | ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 344566666665443211 0 12234568888888888874 46666 7888888888888888842 3 3455
Q ss_pred cCCcccEEeccCCCCccccchhccCCCCCcEEecCCCCCccc--cC--cccCCCCCCCccCceeeCCccccccccccccC
Q 003435 348 KLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISSCYSLTH--MP--LGIGKLRPLRKLPAFILGKQRFCAGLGELKLL 423 (820)
Q Consensus 348 ~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~--~p--~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L 423 (820)
.+++|++|+|++|.+.+..|..++.+++|++|++++|.+.+. ++ ..+..+++|++|++..+.+....
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~--------- 213 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT--------- 213 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH---------
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH---------
Confidence 788888888888888777777888888888888888875542 22 22356666666655544332111
Q ss_pred CCCCceeecccCCCCChhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccc
Q 003435 424 DLRGRLEIKNLENLKNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLN 503 (820)
Q Consensus 424 ~l~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~ 503 (820)
......+..+..|+.|++++|.+....... ...+..+++|++|++++|.++.+|..++
T Consensus 214 ------------------~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~----~~~~~~~~~L~~L~Ls~N~l~~lp~~~~ 271 (310)
T 4glp_A 214 ------------------GVCAALAAAGVQPHSLDLSHNSLRATVNPS----APRCMWSSALNSLNLSFAGLEQVPKGLP 271 (310)
T ss_dssp ------------------HHHHHHHHHTCCCSSEECTTSCCCCCCCSC----CSSCCCCTTCCCEECCSSCCCSCCSCCC
T ss_pred ------------------HHHHHHHhcCCCCCEEECCCCCCCccchhh----HHhccCcCcCCEEECCCCCCCchhhhhc
Confidence 110111223334444444444432221000 0111122566777777777666666543
Q ss_pred cCCCCccEEEecccccCCCCCCCCCCCCcceeeccCcCc
Q 003435 504 SGVPNLVKVSLVDCTCQELPPLGQLPNLKDLYVKGMSAV 542 (820)
Q Consensus 504 ~~l~~L~~L~L~~n~~~~l~~l~~l~~L~~L~L~~n~~~ 542 (820)
++|+.|++++|.++++|.+..+++|+.|++++|++.
T Consensus 272 ---~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 272 ---AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp ---SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTS
T ss_pred ---CCCCEEECCCCcCCCCchhhhCCCccEEECcCCCCC
Confidence 567777777776666666666677777777666543
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.72 E-value=7.7e-18 Score=174.46 Aligned_cols=195 Identities=15% Similarity=0.155 Sum_probs=138.5
Q ss_pred CCcccEEEEcCCCCCCCCC------CCCCcCceEecccCCcc------ccccCCCCCcceEEccCCCCCccccccCCCCC
Q 003435 593 FPCLEKLVVEGCSMLNTLP------FIRNLKNLALCNSNDKL------VCSLSRFPSLSSLVVDNFPELNCLSDKTGNLN 660 (820)
Q Consensus 593 ~~~L~~L~l~~~~~~~~~~------~l~~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 660 (820)
+++|++|++++|.+.+..| .+++|+.|++++|.... ...+..+++|++|++++|.+.+..+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4568899999998766543 36678888888887332 12344688888888888888877778888888
Q ss_pred CccEEEEccCCCccc--hhh--hcCCCCCcceEeeccCcccccCcc----ccCCCCcccEEEecCCCCCCccccccCCC-
Q 003435 661 SLVKLTVNECDNLES--LFV--FMQSFSSLRHLSILHCDKLESLPM----SLEKFCSLQKLDIVECPRLVHIPDIMGQH- 731 (820)
Q Consensus 661 ~L~~L~L~~n~~~~~--~~~--~~~~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~L~~n~~~~~~~~~~~~l- 731 (820)
+|++|++++|++.+. ++. .+..+++|++|++++|.+. .++. .+..+++|++|+|++|.+.+..|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 888888888876653 221 3467888888888888764 2332 24567888888888888877777666665
Q ss_pred --CCccEEEeccCCCcccccccccCCCCcceEEEeCCchhhHHHhccccCCCcccccCCceeEecCceeee
Q 003435 732 --SSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDPIAQMEVVSMTTLNLMA 800 (820)
Q Consensus 732 --~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~l~l~~~n~~~ 800 (820)
++|++|++++|.+.. +|..+. ++|++|++++|. +.+. +.+..+++|+.|++++ |.++
T Consensus 249 ~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~------l~~~--~~~~~l~~L~~L~L~~-N~l~ 307 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNR------LNRA--PQPDELPEVDNLTLDG-NPFL 307 (310)
T ss_dssp CCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCC------CCSC--CCTTSCCCCSCEECSS-TTTS
T ss_pred CcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCc------CCCC--chhhhCCCccEEECcC-CCCC
Confidence 688888888888774 555553 688888888753 2222 2356677888888888 6554
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.72 E-value=3.3e-17 Score=158.82 Aligned_cols=164 Identities=13% Similarity=0.036 Sum_probs=127.2
Q ss_pred CCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEE
Q 003435 635 FPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLD 714 (820)
Q Consensus 635 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 714 (820)
.++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 45788888888888777666778888888888888877765555678888888888888887665566678888888888
Q ss_pred ecCCCCCCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCchhhHHHhccccCCCcccccCCceeEec
Q 003435 715 IVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDPIAQMEVVSMT 794 (820)
Q Consensus 715 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~l~l~ 794 (820)
+++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|+-. ...+.|+.+++.
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------------~~~~~l~~L~~~ 173 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------------CTCPGIRYLSEW 173 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------------CCTTTTHHHHHH
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------------cCCCCHHHHHHH
Confidence 8888877766666788888888888888888777767888888888888886421 235577888887
Q ss_pred CceeeeccCCCcccccch
Q 003435 795 TLNLMADEVPTETDAGAS 812 (820)
Q Consensus 795 ~~n~~~~~~~~~~~~~~~ 812 (820)
. |.++|.+|..++.++.
T Consensus 174 ~-n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 174 I-NKHSGVVRNSAGSVAP 190 (208)
T ss_dssp H-HHCTTTBBCTTSSBCT
T ss_pred H-HhCCceeeccCccccC
Confidence 7 7888888877776653
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.71 E-value=8.3e-19 Score=186.04 Aligned_cols=78 Identities=17% Similarity=0.147 Sum_probs=46.1
Q ss_pred EEeCCCCCccc-CccccCcccccEEeccCccccccc-----cccccCC-cccEEeccCCCCccccchhccCC-----CCC
Q 003435 309 LDLGQSGIIKL-PDSIGTLKHLRYLDLSHTYIRKIP-----GSISKLK-HLQTLDLSNCYNLEELPKGICQL-----TNL 376 (820)
Q Consensus 309 L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp-----~~~~~L~-~L~~L~L~~n~~~~~lp~~~~~l-----~~L 376 (820)
+++++|.++.. |..+...++|++|+|++|.++..+ ..+..++ +|++|+|++|.+....+..++.+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 45666666633 343444445677777777666553 4556666 66777776666555555555443 666
Q ss_pred cEEecCCCCC
Q 003435 377 RTLDISSCYS 386 (820)
Q Consensus 377 ~~L~L~~n~~ 386 (820)
++|++++|.+
T Consensus 83 ~~L~Ls~n~l 92 (362)
T 3goz_A 83 TSLNLSGNFL 92 (362)
T ss_dssp CEEECCSSCG
T ss_pred cEEECcCCcC
Confidence 6666666653
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=2.5e-17 Score=168.32 Aligned_cols=172 Identities=18% Similarity=0.239 Sum_probs=117.8
Q ss_pred cCCCCccEEEeecccccccCccccCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEEec
Q 003435 278 PRARKLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDL 357 (820)
Q Consensus 278 ~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L 357 (820)
..+++|+.|++++|.+..++ .+..+++|++|++++|.+..++. +..+++|++|+|++|.++.+|. +..+++|++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred hhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence 45666777777777776664 36666777777777777776655 6777777777777777776654 677777777777
Q ss_pred cCCCCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCCC
Q 003435 358 SNCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENL 437 (820)
Q Consensus 358 ~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~ 437 (820)
++|.+.+ + +.++.+++|++|++++|.+.+. ..
T Consensus 120 ~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~-------------------------------------------- 151 (291)
T 1h6t_A 120 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TV-------------------------------------------- 151 (291)
T ss_dssp TTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GG--------------------------------------------
T ss_pred CCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hh--------------------------------------------
Confidence 7765444 3 3466677777777777653221 11
Q ss_pred CChhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEeccc
Q 003435 438 KNVVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDC 517 (820)
Q Consensus 438 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 517 (820)
+..+++|+.|++++|.+..++. +..+++|+.|++++|
T Consensus 152 -----------------------------------------l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 152 -----------------------------------------LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp -----------------------------------------GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred -----------------------------------------hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 2223567777777777777766 356888888888888
Q ss_pred ccCCCCCCCCCCCCcceeeccCcCce
Q 003435 518 TCQELPPLGQLPNLKDLYVKGMSAVQ 543 (820)
Q Consensus 518 ~~~~l~~l~~l~~L~~L~L~~n~~~~ 543 (820)
.++.++.+..+++|+.|++++|++..
T Consensus 189 ~i~~l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 189 HISDLRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCBCGGGTTCTTCSEEEEEEEEEEC
T ss_pred cCCCChhhccCCCCCEEECcCCcccC
Confidence 88888778888888888888886554
No 101
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=5.1e-18 Score=178.60 Aligned_cols=216 Identities=15% Similarity=0.217 Sum_probs=160.3
Q ss_pred CcccEEEEcCCCCCCCCC---CCCCcCceEecccCC--c-cccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEE
Q 003435 594 PCLEKLVVEGCSMLNTLP---FIRNLKNLALCNSND--K-LVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTV 667 (820)
Q Consensus 594 ~~L~~L~l~~~~~~~~~~---~l~~L~~L~l~~~~~--~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 667 (820)
++++.|++++|.+.+..+ .+++|+.|++++|.. . .+..+..+++|++|++++|.+.+..+..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 344455555544433322 255666666666652 1 3446788999999999999988888888999999999999
Q ss_pred ccC-CCcc-chhhhcCCCCCcceEeeccC-ccccc-CccccCCCC-cccEEEecCC--CCC-CccccccCCCCCccEEEe
Q 003435 668 NEC-DNLE-SLFVFMQSFSSLRHLSILHC-DKLES-LPMSLEKFC-SLQKLDIVEC--PRL-VHIPDIMGQHSSLLELSI 739 (820)
Q Consensus 668 ~~n-~~~~-~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~l~~l~-~L~~L~L~~n--~~~-~~~~~~~~~l~~L~~L~l 739 (820)
++| .+.+ .++..+..+++|++|++++| .+.+. ++..+..++ +|++|++++| .+. +.+|..+..+++|++|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 999 4544 36667889999999999999 66543 577788899 9999999999 444 556777788999999999
Q ss_pred ccCC-CcccccccccCCCCcceEEEeCCchhhHHHhccccCCCcccccCCceeEecCceeeeccCCCccccc-chhhhhh
Q 003435 740 EGCP-MLKLSLKSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDPIAQMEVVSMTTLNLMADEVPTETDAG-ASLREKN 817 (820)
Q Consensus 740 ~~n~-~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~l~l~~~n~~~~~~~~~~~~~-~~L~~L~ 817 (820)
++|. +.+..+..+..+++|++|++++|..+. ......+..+++|+.|++++| ++ ...+..+ .+|+.|+
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~~l~~~~~L~~L~l~~~--i~---~~~~~~l~~~l~~L~ 299 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII-----PETLLELGEIPTLKTLQVFGI--VP---DGTLQLLKEALPHLQ 299 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC-----GGGGGGGGGCTTCCEEECTTS--SC---TTCHHHHHHHSTTSE
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC-----HHHHHHHhcCCCCCEEeccCc--cC---HHHHHHHHhhCcceE
Confidence 9999 666677788999999999999997443 112235667899999999995 22 2344444 3466666
Q ss_pred cC
Q 003435 818 KH 819 (820)
Q Consensus 818 L~ 819 (820)
++
T Consensus 300 l~ 301 (336)
T 2ast_B 300 IN 301 (336)
T ss_dssp ES
T ss_pred Ee
Confidence 65
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.68 E-value=1.2e-18 Score=184.76 Aligned_cols=132 Identities=9% Similarity=-0.069 Sum_probs=83.6
Q ss_pred CCcceEEccCCCCCcc----ccccCCCCC-CccEEEEccCCCccchhh----hcCCC-CCcceEeeccCccccc----Cc
Q 003435 636 PSLSSLVVDNFPELNC----LSDKTGNLN-SLVKLTVNECDNLESLFV----FMQSF-SSLRHLSILHCDKLES----LP 701 (820)
Q Consensus 636 ~~L~~L~l~~n~~~~~----~~~~~~~l~-~L~~L~L~~n~~~~~~~~----~~~~l-~~L~~L~l~~n~~~~~----~~ 701 (820)
++|++|++++|.+.+. ++..+..++ +|++|+|++|.+.+..+. .+..+ ++|++|++++|.+... ++
T Consensus 138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~ 217 (362)
T 3goz_A 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELA 217 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHH
Confidence 5788888888877643 233334444 788888888876654443 33444 4788888888875542 34
Q ss_pred cccCC-CCcccEEEecCCCCCCccc----cccCCCCCccEEEeccCCCcc-------cccccccCCCCcceEEEeCCc
Q 003435 702 MSLEK-FCSLQKLDIVECPRLVHIP----DIMGQHSSLLELSIEGCPMLK-------LSLKSIEFLGQLQRLVIKKCP 767 (820)
Q Consensus 702 ~~l~~-l~~L~~L~L~~n~~~~~~~----~~~~~l~~L~~L~l~~n~~~~-------~~~~~~~~l~~L~~L~l~~~~ 767 (820)
..+.. .++|++|+|++|++....+ ..+..+++|++|++++|.+.. .++..+..+++|++|++++|+
T Consensus 218 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 44444 3478888888887665433 334667778888888877332 234456677777777777764
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.67 E-value=2.7e-16 Score=173.95 Aligned_cols=179 Identities=18% Similarity=0.201 Sum_probs=126.7
Q ss_pred CccEEEeecccccccCccccCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEEeccCCC
Q 003435 282 KLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSNCY 361 (820)
Q Consensus 282 ~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~ 361 (820)
+++.|++++|.+..+|..+ +++|++|+|++|.++.+| ..+++|++|+|++|.|+.+|. +.+ +|++|+|++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 7788888888888887764 267888888888888887 456788888888888888877 655 88888888876
Q ss_pred CccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCCCCChh
Q 003435 362 NLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLKNVV 441 (820)
Q Consensus 362 ~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~ 441 (820)
+.+ +|. .+++|++|++++|.+.+ +|. .+++|+.|++..|.+..++
T Consensus 132 l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp--------------------------- 176 (571)
T 3cvr_A 132 LTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLP--------------------------- 176 (571)
T ss_dssp CSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCC---------------------------
T ss_pred CCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcc---------------------------
Confidence 655 666 57888888888887543 554 3445555544333221111
Q ss_pred hhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCc-------cEEEe
Q 003435 442 DAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNL-------VKVSL 514 (820)
Q Consensus 442 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L-------~~L~L 514 (820)
. +. ++|+.|++++|.++.+|. +.. +| +.|+|
T Consensus 177 -----------------------------------~-l~--~~L~~L~Ls~N~L~~lp~-~~~---~L~~~~~~L~~L~L 214 (571)
T 3cvr_A 177 -----------------------------------E-LP--ESLEALDVSTNLLESLPA-VPV---RNHHSEETEIFFRC 214 (571)
T ss_dssp -----------------------------------C-CC--TTCCEEECCSSCCSSCCC-CC-----------CCEEEEC
T ss_pred -----------------------------------h-hh--CCCCEEECcCCCCCchhh-HHH---hhhcccccceEEec
Confidence 1 11 478888888888888777 332 66 88888
Q ss_pred cccccCCCCC-CCCCCCCcceeeccCcCceEe
Q 003435 515 VDCTCQELPP-LGQLPNLKDLYVKGMSAVQII 545 (820)
Q Consensus 515 ~~n~~~~l~~-l~~l~~L~~L~L~~n~~~~~~ 545 (820)
++|.++.+|. +..+++|+.|+|++|++.+..
T Consensus 215 s~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 215 RENRITHIPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp CSSCCCCCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred CCCcceecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 8888888887 777888888888888876543
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.66 E-value=8.1e-16 Score=149.92 Aligned_cols=132 Identities=14% Similarity=0.067 Sum_probs=101.8
Q ss_pred CCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEe
Q 003435 636 PSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDI 715 (820)
Q Consensus 636 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L 715 (820)
++|+.|++++|.+.+..+..|..+++|++|+|++|.+.+..|..+.++++|++|++++|.+....+..|.++++|++|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 56777888888777776667777888888888888777766777788888888888888766555555677888888888
Q ss_pred cCCCCCCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCc
Q 003435 716 VECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCP 767 (820)
Q Consensus 716 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 767 (820)
++|.+.+..|..|..+++|++|++++|.+.+..+..+..+++|++|++++|+
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 8887777777777788888888888888777777777778888888887764
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=6.3e-16 Score=148.16 Aligned_cols=150 Identities=16% Similarity=0.185 Sum_probs=81.0
Q ss_pred CCCcccEEEEcCCCCCCCCCCCCCcCceEecccCCccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCC
Q 003435 592 PFPCLEKLVVEGCSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECD 671 (820)
Q Consensus 592 ~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 671 (820)
.+++|+.|++++|.+. .+| .+..+++|++|++++|.+... ..+..+++|++|++++|.
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-------------------~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~ 99 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-------------------GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKD 99 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-------------------TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTT
T ss_pred hcCCccEEeccCCCcc-ChH-------------------HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCc
Confidence 4566777777776554 222 234445555555555533221 235555555555555555
Q ss_pred CccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCccccccc
Q 003435 672 NLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKS 751 (820)
Q Consensus 672 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 751 (820)
+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|+..+.+| .+..+++|++|++++|.+.+. + .
T Consensus 100 l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~ 176 (197)
T 4ezg_A 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY-R-G 176 (197)
T ss_dssp CBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-T-T
T ss_pred cCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh-H-H
Confidence 555444555555556666666555555455555555566666666655334444 355556666666666655442 2 4
Q ss_pred ccCCCCcceEEEeCC
Q 003435 752 IEFLGQLQRLVIKKC 766 (820)
Q Consensus 752 ~~~l~~L~~L~l~~~ 766 (820)
+..+++|++|+++++
T Consensus 177 l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 177 IEDFPKLNQLYAFSQ 191 (197)
T ss_dssp GGGCSSCCEEEECBC
T ss_pred hccCCCCCEEEeeCc
Confidence 555566666666554
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.65 E-value=7.5e-16 Score=170.42 Aligned_cols=187 Identities=20% Similarity=0.135 Sum_probs=116.9
Q ss_pred CCCcEEEEecCCCCCCCcccccCCCCccEEEecccccCCCCCCCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcc
Q 003435 483 HNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELPPLGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLK 562 (820)
Q Consensus 483 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~ 562 (820)
.+++.|++++|.++.+|..++ ++|+.|++++|.++.+| ..+++|+.|++++|.+..+..
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~---------------- 117 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP---PQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE---------------- 117 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC---TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC----------------
T ss_pred CCccEEEeCCCCCCccCHhHc---CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch----------------
Confidence 378889999988888887653 78899999999888888 667888888888886554211
Q ss_pred eeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCCCCCcCceEecccCCccccccCCCCCcceEE
Q 003435 563 LLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFPSLSSLV 642 (820)
Q Consensus 563 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~ 642 (820)
+.. +|++|++++|.+.+ +|. .+++|+.|+
T Consensus 118 ---------------------------l~~--~L~~L~Ls~N~l~~-lp~---------------------~l~~L~~L~ 146 (571)
T 3cvr_A 118 ---------------------------LPA--SLKHLDVDNNQLTM-LPE---------------------LPALLEYIN 146 (571)
T ss_dssp ---------------------------CCT--TCCEEECCSSCCSC-CCC---------------------CCTTCCEEE
T ss_pred ---------------------------hhc--CCCEEECCCCcCCC-CCC---------------------cCccccEEe
Confidence 001 45666666665443 331 345566666
Q ss_pred ccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcc-------cEEEe
Q 003435 643 VDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSL-------QKLDI 715 (820)
Q Consensus 643 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L-------~~L~L 715 (820)
+++|.+.+ +|. .+++|++|++++|.+.+ +|. +. ++|++|++++|.+. .+|. +.. +| +.|+|
T Consensus 147 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~L 214 (571)
T 3cvr_A 147 ADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRC 214 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEEC
T ss_pred CCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEec
Confidence 66666554 332 45566666666665544 444 33 66666666666544 4554 433 55 77777
Q ss_pred cCCCCCCccccccCCCCCccEEEeccCCCcccccccccC
Q 003435 716 VECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEF 754 (820)
Q Consensus 716 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 754 (820)
++|++. .+|..+..+++|+.|++++|++.+.+|..+..
T Consensus 215 s~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 215 RENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred CCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 777554 45655556777777777777776666655544
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=8.1e-16 Score=157.14 Aligned_cols=166 Identities=14% Similarity=0.179 Sum_probs=114.5
Q ss_pred CCCcccEEEEcCCCCCCC--CCCCCCcCceEecccCCccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEcc
Q 003435 592 PFPCLEKLVVEGCSMLNT--LPFIRNLKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNE 669 (820)
Q Consensus 592 ~~~~L~~L~l~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 669 (820)
.+++|+.|++++|.+... +..+++|+.|++++|.......+..+++|++|++++|.+.+. + .+..+++|++|++++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLSLEH 121 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEECTT
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCC-h-hhccCCCCCEEECCC
Confidence 567888999988866432 223677777777777743333477777778888877776553 2 377777777777777
Q ss_pred CCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCccccc
Q 003435 670 CDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSL 749 (820)
Q Consensus 670 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 749 (820)
|.+.+. ..+..+++|++|++++|.+.+. ..+..+++|++|++++|++.+..| +..+++|+.|++++|.+.+. +
T Consensus 122 n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~ 194 (291)
T 1h6t_A 122 NGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R 194 (291)
T ss_dssp SCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G
T ss_pred CcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h
Confidence 766553 3566777777777777775543 466777777777777776665544 67777777777777776653 3
Q ss_pred ccccCCCCcceEEEeCCc
Q 003435 750 KSIEFLGQLQRLVIKKCP 767 (820)
Q Consensus 750 ~~~~~l~~L~~L~l~~~~ 767 (820)
.+..+++|+.|++++|+
T Consensus 195 -~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 195 -ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp -GGTTCTTCSEEEEEEEE
T ss_pred -hhccCCCCCEEECcCCc
Confidence 36777777777777753
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.65 E-value=1.2e-15 Score=148.63 Aligned_cols=130 Identities=14% Similarity=0.007 Sum_probs=75.1
Q ss_pred cceEEccCCCCCcccc-ccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEec
Q 003435 638 LSSLVVDNFPELNCLS-DKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIV 716 (820)
Q Consensus 638 L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~ 716 (820)
+++|++++|.+.+..+ ..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+|+
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 4555555555555432 235555666666666665555444455566666666666665555555555566666666666
Q ss_pred CCCCCCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCc
Q 003435 717 ECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCP 767 (820)
Q Consensus 717 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 767 (820)
+|++.+..|..|..+++|++|++++|.+.+..|..|..+++|++|++++|+
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 666555555556666666666666666655555566666666666665553
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=7.9e-16 Score=147.47 Aligned_cols=156 Identities=15% Similarity=0.149 Sum_probs=129.9
Q ss_pred cCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCccc
Q 003435 632 LSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQ 711 (820)
Q Consensus 632 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 711 (820)
...+++|++|++++|.+. .++ .+..+++|++|++++|.+.. + ..+..+++|++|++++|.+.+..|..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN-Y-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC-C-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc-c-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 356788999999999887 444 58889999999999995433 3 3788999999999999998887888999999999
Q ss_pred EEEecCCCCCCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCchhhHHHhccccCCCcccccCCcee
Q 003435 712 KLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDPIAQMEVV 791 (820)
Q Consensus 712 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~l 791 (820)
+|++++|.+.+..|..+..+++|++|++++|...+.+| .+..+++|++|++++|. +.. ...+..+++|+.|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~------i~~--~~~l~~l~~L~~L 186 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG------VHD--YRGIEDFPKLNQL 186 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC------CCC--CTTGGGCSSCCEE
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC------CcC--hHHhccCCCCCEE
Confidence 99999999998888999999999999999998445455 68999999999999874 222 2378889999999
Q ss_pred EecCceeeec
Q 003435 792 SMTTLNLMAD 801 (820)
Q Consensus 792 ~l~~~n~~~~ 801 (820)
++++ |.+.+
T Consensus 187 ~l~~-N~i~~ 195 (197)
T 4ezg_A 187 YAFS-QTIGG 195 (197)
T ss_dssp EECB-C----
T ss_pred EeeC-cccCC
Confidence 9999 76654
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.64 E-value=4.6e-16 Score=164.58 Aligned_cols=172 Identities=22% Similarity=0.213 Sum_probs=120.7
Q ss_pred cEEEeecccccccCccccCCceeEEEEeCCCCCcccCc-ccc-CcccccEEeccCccccccc-cccccCCcccEEeccCC
Q 003435 284 RTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPD-SIG-TLKHLRYLDLSHTYIRKIP-GSISKLKHLQTLDLSNC 360 (820)
Q Consensus 284 ~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~-~~~-~l~~L~~L~Ls~n~i~~lp-~~~~~L~~L~~L~L~~n 360 (820)
++++++++.+..+|..+. +.+++|+|++|.++.++. .|. ++++|++|+|++|.|+.++ ..|.++++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 567778888888877643 347888888888887754 455 7888888888888888775 56888888888888887
Q ss_pred CCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCCCCCh
Q 003435 361 YNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLKNV 440 (820)
Q Consensus 361 ~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~ 440 (820)
.+....+..|..+++|++|+|++|.+....|..|..+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l------------------------------------------- 135 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM------------------------------------------- 135 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-------------------------------------------
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCc-------------------------------------------
Confidence 7666666667888888888888887554444444333
Q ss_pred hhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccc---cCCCCccEEEeccc
Q 003435 441 VDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLN---SGVPNLVKVSLVDC 517 (820)
Q Consensus 441 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~---~~l~~L~~L~L~~n 517 (820)
++|+.|+|++|.++.+|...+ ..+++|+.|+|++|
T Consensus 136 ------------------------------------------~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 136 ------------------------------------------AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp ------------------------------------------TTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred ------------------------------------------ccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 455666666666666666654 34677777777777
Q ss_pred ccCCCCC--CCCCCC--CcceeeccCcCc
Q 003435 518 TCQELPP--LGQLPN--LKDLYVKGMSAV 542 (820)
Q Consensus 518 ~~~~l~~--l~~l~~--L~~L~L~~n~~~ 542 (820)
.++.+|. +..++. ++.|+|++|++.
T Consensus 174 ~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 174 KLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 7777664 555665 367777777643
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=3.1e-16 Score=175.67 Aligned_cols=173 Identities=16% Similarity=0.177 Sum_probs=122.9
Q ss_pred CCCCccEEEecccccCCCCCCCCCCCCcceeeccCcCceEeCccccCCCcccCCCCcceeecCCCcccccccccccCCCc
Q 003435 505 GVPNLVKVSLVDCTCQELPPLGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSLKLLQLFDMPNLMEWKGQMTEGTD 584 (820)
Q Consensus 505 ~l~~L~~L~L~~n~~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 584 (820)
.+++|+.|++++|.+..++.++.+++|+.|+|++|.+..+.+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-------------------------------------- 82 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-------------------------------------- 82 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--------------------------------------
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--------------------------------------
Confidence 467777777777777777777777777777777775433210
Q ss_pred cCCCCCCCCCcccEEEEcCCCCCCCCCCCCCcCceEecccCCccccccCCCCCcceEEccCCCCCccccccCCCCCCccE
Q 003435 585 EFDGMQEPFPCLEKLVVEGCSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVK 664 (820)
Q Consensus 585 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 664 (820)
+..+++|+.|++++|.+.. + ..+..+++|+.|+|++|.+.+. ..+..+++|+.
T Consensus 83 -----l~~l~~L~~L~Ls~N~l~~-l-------------------~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~ 135 (605)
T 1m9s_A 83 -----LTNLKNLGWLFLDENKIKD-L-------------------SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLES 135 (605)
T ss_dssp -----GGGCTTCCEEECCSSCCCC-C-------------------TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSE
T ss_pred -----hccCCCCCEEECcCCCCCC-C-------------------hhhccCCCCCEEEecCCCCCCC--ccccCCCccCE
Confidence 1145667777777765432 2 2456677888888888877653 34777888888
Q ss_pred EEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCC
Q 003435 665 LTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPM 744 (820)
Q Consensus 665 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 744 (820)
|+|++|.+.+. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|++.+. | .+..+++|+.|+|++|++
T Consensus 136 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 136 LYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp EECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEE
T ss_pred EECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcC
Confidence 88888876664 467788888888888887665545 77888888888888877653 3 477888888888888887
Q ss_pred cccc
Q 003435 745 LKLS 748 (820)
Q Consensus 745 ~~~~ 748 (820)
.+..
T Consensus 210 ~~~p 213 (605)
T 1m9s_A 210 LNKP 213 (605)
T ss_dssp ECCC
T ss_pred cCCc
Confidence 6643
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.63 E-value=4.6e-15 Score=143.69 Aligned_cols=144 Identities=13% Similarity=0.065 Sum_probs=107.5
Q ss_pred ccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcc
Q 003435 631 SLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSL 710 (820)
Q Consensus 631 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 710 (820)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 126 (208)
T 2o6s_A 47 VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL 126 (208)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcC
Confidence 46677888888888888877766677888888888888887776655567888888888888888766666667888888
Q ss_pred cEEEecCCCCCCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCchhhHHHhccccCCCcccccC
Q 003435 711 QKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDPIAQ 787 (820)
Q Consensus 711 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~ 787 (820)
++|++++|++.+..+..+..+++|++|++++|++.+ .+++|+.|+++ .+.+.+..+..+..+..
T Consensus 127 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~------~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEW------INKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHH------HHHCTTTBBCTTSSBCT
T ss_pred CEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHH------HHhCCceeeccCccccC
Confidence 888888888776666667888888888888887554 34567777433 36666666666655443
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.62 E-value=2.9e-15 Score=147.11 Aligned_cols=131 Identities=11% Similarity=0.077 Sum_probs=90.7
Q ss_pred CCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEe
Q 003435 636 PSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDI 715 (820)
Q Consensus 636 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L 715 (820)
++|++|++++|.+.+..+..+..+++|++|+|++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 56777777777777766666777777777777777665444445667777777777777666555555667777777777
Q ss_pred cCCCCCCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCc
Q 003435 716 VECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCP 767 (820)
Q Consensus 716 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 767 (820)
++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|+
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 777655 556666777777777777777766666667777777777777654
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.62 E-value=2.9e-16 Score=157.65 Aligned_cols=169 Identities=17% Similarity=0.153 Sum_probs=103.8
Q ss_pred CCCccEEEeecccccccCccccCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEEeccC
Q 003435 280 ARKLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSN 359 (820)
Q Consensus 280 ~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~ 359 (820)
+.++..+.+.++.+..++ .+..+++|++|++++|++..+| .+..+++|++|+|++|.|+.+|. +..+++|++|++++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence 334444455555555544 3455555666666666665554 45555666666666666665554 55566666666665
Q ss_pred CCCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCccccccccccccCCCCCceeecccCCCCC
Q 003435 360 CYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQRFCAGLGELKLLDLRGRLEIKNLENLKN 439 (820)
Q Consensus 360 n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~ 439 (820)
|.+.+ +|. +.. ++|++|++++|.+.+ +
T Consensus 95 N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~------------------------------------------------- 121 (263)
T 1xeu_A 95 NRLKN-LNG-IPS-ACLSRLFLDNNELRD-T------------------------------------------------- 121 (263)
T ss_dssp SCCSC-CTT-CCC-SSCCEEECCSSCCSB-S-------------------------------------------------
T ss_pred CccCC-cCc-ccc-CcccEEEccCCccCC-C-------------------------------------------------
Confidence 54332 332 222 555566555554221 1
Q ss_pred hhhhhhhccccccccceeeEEeccCCccChhhHHHHhhccCCCCCCcEEEEecCCCCCCCcccccCCCCccEEEeccccc
Q 003435 440 VVDAEEAKLHDKVHIRSLGLSWSRNAQMRDDKAQALIEFLRPPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTC 519 (820)
Q Consensus 440 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~ 519 (820)
..+..+++|+.|++++|.++.++. +..+++|+.|++++|.+
T Consensus 122 -------------------------------------~~l~~l~~L~~L~Ls~N~i~~~~~--l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 122 -------------------------------------DSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp -------------------------------------GGGTTCTTCCEEECTTSCCCBCGG--GGGCTTCCEEECTTSCC
T ss_pred -------------------------------------hhhcCcccccEEECCCCcCCCChH--HccCCCCCEEECCCCcC
Confidence 113344577888888888877753 34688899999999988
Q ss_pred CCCCCCCCCCCCcceeeccCcCce
Q 003435 520 QELPPLGQLPNLKDLYVKGMSAVQ 543 (820)
Q Consensus 520 ~~l~~l~~l~~L~~L~L~~n~~~~ 543 (820)
+.++.+..+++|+.|++++|++..
T Consensus 163 ~~~~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 163 TNTGGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CBCTTSTTCCCCCEEEEEEEEEEC
T ss_pred cchHHhccCCCCCEEeCCCCcccC
Confidence 888778888999999998887654
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=2.1e-15 Score=169.03 Aligned_cols=166 Identities=14% Similarity=0.185 Sum_probs=129.5
Q ss_pred CCCcccEEEEcCCCCCC--CCCCCCCcCceEecccCCccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEcc
Q 003435 592 PFPCLEKLVVEGCSMLN--TLPFIRNLKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNE 669 (820)
Q Consensus 592 ~~~~L~~L~l~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 669 (820)
.+++|+.|++++|.+.. .+..+++|+.|++++|.......+..+++|+.|+|++|.+.+. + .+..+++|+.|+|++
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL-S-SLKDLKKLKSLSLEH 118 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-T-TSTTCTTCCEEECTT
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCC-h-hhccCCCCCEEEecC
Confidence 57789999999887644 2233788888898888844444588888899999998887653 2 578888899999988
Q ss_pred CCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCccccc
Q 003435 670 CDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSL 749 (820)
Q Consensus 670 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 749 (820)
|.+... ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|++.+.
T Consensus 119 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-- 190 (605)
T 1m9s_A 119 NGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-- 190 (605)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--
T ss_pred CCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--
Confidence 877653 3577888899999988876654 477888889999999888777655 78888899999999887764
Q ss_pred ccccCCCCcceEEEeCCc
Q 003435 750 KSIEFLGQLQRLVIKKCP 767 (820)
Q Consensus 750 ~~~~~l~~L~~L~l~~~~ 767 (820)
..+..+++|+.|++++|+
T Consensus 191 ~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 191 RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp GGGTTCTTCSEEECCSEE
T ss_pred hHHccCCCCCEEEccCCc
Confidence 357888888888888864
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.62 E-value=4.3e-15 Score=144.80 Aligned_cols=150 Identities=12% Similarity=0.079 Sum_probs=128.1
Q ss_pred cEEEEcCCCCCCCCCC--CCCcCceEecccCCccc---cccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCC
Q 003435 597 EKLVVEGCSMLNTLPF--IRNLKNLALCNSNDKLV---CSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECD 671 (820)
Q Consensus 597 ~~L~l~~~~~~~~~~~--l~~L~~L~l~~~~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 671 (820)
+.+++++|.+.. +|. .+.++.|++++|..... ..+..+++|++|++++|.+.+..+..|.++++|++|+|++|.
T Consensus 14 ~~l~~s~n~l~~-iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSS-CCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCccc-CccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 466666665443 443 34567777777773322 347889999999999999998888899999999999999999
Q ss_pred CccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCccc
Q 003435 672 NLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKL 747 (820)
Q Consensus 672 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 747 (820)
+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|+|++|++.+..|..|..+++|++|++++|++...
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 9888888899999999999999999888899999999999999999999998899999999999999999997753
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.60 E-value=3.2e-15 Score=158.16 Aligned_cols=170 Identities=16% Similarity=0.106 Sum_probs=132.6
Q ss_pred cEEEEcCCCCCCCCCC--CCCcCceEecccCC--ccccccC-CCCCcceEEccCCCCCccccccCCCCCCccEEEEccCC
Q 003435 597 EKLVVEGCSMLNTLPF--IRNLKNLALCNSND--KLVCSLS-RFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECD 671 (820)
Q Consensus 597 ~~L~l~~~~~~~~~~~--l~~L~~L~l~~~~~--~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 671 (820)
+.++++++.+. .+|. .+.++.|++++|.. .....+. .+++|++|++++|.+.+..+..|.++++|++|+|++|.
T Consensus 21 ~~l~c~~~~l~-~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCS-SCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcC-ccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 34555555433 2332 33466677766662 2233455 88999999999999988888889999999999999998
Q ss_pred CccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCCCcccccc---CCCCCccEEEeccCCCcccc
Q 003435 672 NLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLVHIPDIM---GQHSSLLELSIEGCPMLKLS 748 (820)
Q Consensus 672 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~---~~l~~L~~L~l~~n~~~~~~ 748 (820)
+....+..+..+++|++|+|++|.+.+..|..|..+++|+.|+|++|.+.+..+..| ..+++|+.|+|++|++.+..
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 877766688999999999999999888888899999999999999998876555555 56899999999999998877
Q ss_pred cccccCCCC--cceEEEeCCc
Q 003435 749 LKSIEFLGQ--LQRLVIKKCP 767 (820)
Q Consensus 749 ~~~~~~l~~--L~~L~l~~~~ 767 (820)
+..+..++. |+.|++++|+
T Consensus 180 ~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 180 LTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp HHHHHHSCHHHHTTEECCSSC
T ss_pred HHHhhhccHhhcceEEecCCC
Confidence 777888887 4889998865
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.59 E-value=8e-15 Score=142.88 Aligned_cols=153 Identities=12% Similarity=0.108 Sum_probs=131.5
Q ss_pred ceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCC
Q 003435 639 SSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVEC 718 (820)
Q Consensus 639 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n 718 (820)
+.++.+++.+.. +|..+. ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 567777776554 344332 68999999999988877778999999999999999988888999999999999999999
Q ss_pred CCCCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCchhhHHHhccccCCCcccccCCceeEecCcee
Q 003435 719 PRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDPIAQMEVVSMTTLNL 798 (820)
Q Consensus 719 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~l~l~~~n~ 798 (820)
.+....+..|..+++|++|++++|.+.+..|..|..+++|++|++++| .+....+..|..+++|+.+++++ |.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N------~l~~~~~~~~~~l~~L~~L~L~~-N~ 163 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN------KLQTIAKGTFSPLRAIQTMHLAQ-NP 163 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS------CCSCCCTTTTTTCTTCCEEECCS-SC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC------cCCEECHHHHhCCCCCCEEEeCC-CC
Confidence 988776677899999999999999999998999999999999999985 45566677788999999999999 66
Q ss_pred eec
Q 003435 799 MAD 801 (820)
Q Consensus 799 ~~~ 801 (820)
+..
T Consensus 164 ~~c 166 (220)
T 2v9t_B 164 FIC 166 (220)
T ss_dssp EEC
T ss_pred cCC
Confidence 543
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.56 E-value=3.3e-14 Score=139.58 Aligned_cols=135 Identities=15% Similarity=0.053 Sum_probs=114.9
Q ss_pred CCCcCceEecccC--CccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEe
Q 003435 613 IRNLKNLALCNSN--DKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLS 690 (820)
Q Consensus 613 l~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 690 (820)
.++|+.|++++|. ...+..+..+++|++|++++|.+....+..|..+++|++|+|++|.+.+..+..+..+++|++|+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 3556666666665 22345688899999999999999877777889999999999999988877666789999999999
Q ss_pred eccCcccccCccccCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCcccc
Q 003435 691 ILHCDKLESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLS 748 (820)
Q Consensus 691 l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 748 (820)
+++|.+. .+|..+..+++|++|+|++|++.+..+..+..+++|+.|++++|++....
T Consensus 119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 9999865 78889999999999999999988777778999999999999999977543
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=7.7e-17 Score=179.62 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=33.4
Q ss_pred cCcccccEEeccCccccccccccccCCcccEEeccCCC
Q 003435 324 GTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSNCY 361 (820)
Q Consensus 324 ~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~ 361 (820)
..+++|+.|+|++|.++.+|..+++|++|+.|++++|.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~ 383 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKW 383 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccch
Confidence 56888999999999999999999999999999997754
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=1.6e-14 Score=134.53 Aligned_cols=134 Identities=23% Similarity=0.226 Sum_probs=111.9
Q ss_pred CCCccEEEeeccccc--ccCccccCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccc-cccccccCCcccEEe
Q 003435 280 ARKLRTLLFLTVKME--NLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRK-IPGSISKLKHLQTLD 356 (820)
Q Consensus 280 ~~~L~~L~l~~n~~~--~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~-lp~~~~~L~~L~~L~ 356 (820)
.++|+.|++++|.+. .+|..+..+++|++|++++|.+..+ ..+..+++|++|+|++|.++. +|..+..+++|++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 478999999999998 7877788999999999999999988 778999999999999999997 688788899999999
Q ss_pred ccCCCCccc-cchhccCCCCCcEEecCCCCCccccC---cccCCCCCCCccCceeeCCcccc
Q 003435 357 LSNCYNLEE-LPKGICQLTNLRTLDISSCYSLTHMP---LGIGKLRPLRKLPAFILGKQRFC 414 (820)
Q Consensus 357 L~~n~~~~~-lp~~~~~l~~L~~L~L~~n~~~~~~p---~~~~~l~~L~~L~~~~~~~~~~~ 414 (820)
+++|.+.+. .+..++.+++|++|++++|.+.+..+ ..+..+++|+.|++..+.....+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 999876553 22678999999999999998554443 37889999999988877665443
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=7.8e-15 Score=133.52 Aligned_cols=127 Identities=20% Similarity=0.248 Sum_probs=108.8
Q ss_pred CCCCccEEEeeccccc--ccCccccCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccc-cccccccCCcccEE
Q 003435 279 RARKLRTLLFLTVKME--NLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRK-IPGSISKLKHLQTL 355 (820)
Q Consensus 279 ~~~~L~~L~l~~n~~~--~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~-lp~~~~~L~~L~~L 355 (820)
..++++.|++++|.+. .+|..+..+++|++|++++|.++.+ ..++.+++|++|+|++|.++. +|..++.+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 3578999999999998 7877789999999999999999988 778999999999999999997 78888889999999
Q ss_pred eccCCCCccc-cchhccCCCCCcEEecCCCCCccccC---cccCCCCCCCccCce
Q 003435 356 DLSNCYNLEE-LPKGICQLTNLRTLDISSCYSLTHMP---LGIGKLRPLRKLPAF 406 (820)
Q Consensus 356 ~L~~n~~~~~-lp~~~~~l~~L~~L~L~~n~~~~~~p---~~~~~l~~L~~L~~~ 406 (820)
++++|.+.+. .|..++.+++|++|++++|.+.+..+ ..+..+++|+.|++.
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999886653 34779999999999999998655444 368888888888653
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.52 E-value=7.2e-15 Score=133.75 Aligned_cols=129 Identities=18% Similarity=0.136 Sum_probs=104.9
Q ss_pred CCCCcceEEccCCCCC-ccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccE
Q 003435 634 RFPSLSSLVVDNFPEL-NCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQK 712 (820)
Q Consensus 634 ~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 712 (820)
..++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3467889999999887 67777888889999999999877665 57888899999999999877777877777889999
Q ss_pred EEecCCCCCCc-cccccCCCCCccEEEeccCCCccccc---ccccCCCCcceEEEe
Q 003435 713 LDIVECPRLVH-IPDIMGQHSSLLELSIEGCPMLKLSL---KSIEFLGQLQRLVIK 764 (820)
Q Consensus 713 L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~ 764 (820)
|++++|++.+. .+..+..+++|++|++++|++.+..+ ..+..+++|++|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99999987663 34778888999999999998877655 467888888888765
No 124
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.52 E-value=1.4e-14 Score=145.41 Aligned_cols=165 Identities=18% Similarity=0.129 Sum_probs=124.8
Q ss_pred CCCcccEEEEcCCCCCCCC--CCCCCcCceEecccCCccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEcc
Q 003435 592 PFPCLEKLVVEGCSMLNTL--PFIRNLKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNE 669 (820)
Q Consensus 592 ~~~~L~~L~l~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 669 (820)
.+.++..++++++.+.... ..+++|+.|++++|.......+..+++|++|++++|.+.+..+ +..+++|++|++++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 4566777788887655422 2378888888888885545577888888899998888777655 88888888898888
Q ss_pred CCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCccccc
Q 003435 670 CDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSL 749 (820)
Q Consensus 670 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 749 (820)
|++.+ ++. +.. ++|++|++++|.+.+ ++ .+..+++|++|++++|++.+. + .+..+++|++|++++|++.+.
T Consensus 95 N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 95 NRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp SCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--
T ss_pred CccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--
Confidence 87665 333 233 888888888887654 44 578888888888888877654 4 577788888888888888775
Q ss_pred ccccCCCCcceEEEeCCc
Q 003435 750 KSIEFLGQLQRLVIKKCP 767 (820)
Q Consensus 750 ~~~~~l~~L~~L~l~~~~ 767 (820)
..+..+++|+.|++++|+
T Consensus 166 ~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTSTTCCCCCEEEEEEEE
T ss_pred HHhccCCCCCEEeCCCCc
Confidence 567888888888888764
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.52 E-value=2.2e-14 Score=136.54 Aligned_cols=125 Identities=21% Similarity=0.176 Sum_probs=90.5
Q ss_pred cEEEeecccccccCccccCCceeEEEEeCCCCCcccCc--cccCcccccEEeccCcccccc-ccccccCCcccEEeccCC
Q 003435 284 RTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPD--SIGTLKHLRYLDLSHTYIRKI-PGSISKLKHLQTLDLSNC 360 (820)
Q Consensus 284 ~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~--~~~~l~~L~~L~Ls~n~i~~l-p~~~~~L~~L~~L~L~~n 360 (820)
++++++++.++.+|..+.. +|++|++++|.+..++. .|+.+++|++|+|++|.|+.+ |..|.++++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5677777777777765432 67777777777777654 377777777788877777766 667777777788887777
Q ss_pred CCccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCC
Q 003435 361 YNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGK 410 (820)
Q Consensus 361 ~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~ 410 (820)
.+.+..|..|+.+++|++|++++|.+.+..|..+..+++|+.|++..+..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 77666666677777778888877777777777777777777776655544
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.52 E-value=1.7e-14 Score=134.26 Aligned_cols=132 Identities=17% Similarity=0.155 Sum_probs=100.4
Q ss_pred CCCCcceEEccCCCCC-ccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccE
Q 003435 634 RFPSLSSLVVDNFPEL-NCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQK 712 (820)
Q Consensus 634 ~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 712 (820)
..++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3467888888888876 56677777888888888888876654 56778888888888888877667777777888888
Q ss_pred EEecCCCCCCcc-ccccCCCCCccEEEeccCCCccccc---ccccCCCCcceEEEeCCc
Q 003435 713 LDIVECPRLVHI-PDIMGQHSSLLELSIEGCPMLKLSL---KSIEFLGQLQRLVIKKCP 767 (820)
Q Consensus 713 L~L~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~~~~ 767 (820)
|++++|.+.+.. +..+..+++|++|++++|++.+..+ ..+..+++|++|++++|.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 888888766542 2667788888888888888776544 467778888888877764
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=3.6e-14 Score=134.86 Aligned_cols=126 Identities=21% Similarity=0.141 Sum_probs=99.2
Q ss_pred cEEEeecccccccCccccCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccccc-cccccCCcccEEeccCCCC
Q 003435 284 RTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIP-GSISKLKHLQTLDLSNCYN 362 (820)
Q Consensus 284 ~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~~~~L~~L~~L~L~~n~~ 362 (820)
++++++++.+..+|..+. ++|++|+|++|.++.+|..|.++++|++|+|++|.|+.++ ..|.++++|++|+|++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 567788888888887643 5788888888888888888888888888888888888774 6788888888888888887
Q ss_pred ccccchhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCc
Q 003435 363 LEELPKGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQ 411 (820)
Q Consensus 363 ~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~ 411 (820)
.+..|..|..+++|++|+|++|.+....+..|..+++|+.|++..|...
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 7777777888888888888888866554556777888887776655543
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.51 E-value=4.4e-14 Score=147.44 Aligned_cols=102 Identities=10% Similarity=-0.036 Sum_probs=64.5
Q ss_pred CCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCccc-EEEecCCCCCCccccccCCCCCccEE
Q 003435 659 LNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQ-KLDIVECPRLVHIPDIMGQHSSLLEL 737 (820)
Q Consensus 659 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~-~L~L~~n~~~~~~~~~~~~l~~L~~L 737 (820)
+++|+.++|++|.+....+.+|.++++|+++++.+| +....+.+|.++++|+ .+++.+ .+...-+..|.++++|+.|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 566666666666555444446666666666666665 4444445666666676 777766 3444445666677777777
Q ss_pred EeccCCCcccccccccCCCCcceEE
Q 003435 738 SIEGCPMLKLSLKSIEFLGQLQRLV 762 (820)
Q Consensus 738 ~l~~n~~~~~~~~~~~~l~~L~~L~ 762 (820)
++++|.+..+.+..|.++++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 7777666666666677777776664
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=6.2e-14 Score=131.47 Aligned_cols=132 Identities=22% Similarity=0.139 Sum_probs=111.2
Q ss_pred CcccCCCCccEEEeecccccccCccccCCc-eeEEEEeCCCCCcccCccccCcccccEEeccCccccccccc-cccCCcc
Q 003435 275 STIPRARKLRTLLFLTVKMENLSFPCQEFQ-CLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGS-ISKLKHL 352 (820)
Q Consensus 275 ~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~-~~~L~~L 352 (820)
..+..+++|+.|++++|.+..++. +..+. +|++|++++|.++.+ +.|..+++|++|+|++|.|+.+|.. +..+++|
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred HhcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 346678899999999999998854 44444 999999999999988 6799999999999999999999754 5999999
Q ss_pred cEEeccCCCCccccch--hccCCCCCcEEecCCCCCccccCcc----cCCCCCCCccCceeeCC
Q 003435 353 QTLDLSNCYNLEELPK--GICQLTNLRTLDISSCYSLTHMPLG----IGKLRPLRKLPAFILGK 410 (820)
Q Consensus 353 ~~L~L~~n~~~~~lp~--~~~~l~~L~~L~L~~n~~~~~~p~~----~~~l~~L~~L~~~~~~~ 410 (820)
++|++++|.+ +.+|. .++.+++|++|++++|.+. .+|.. +..+++|+.|++..+..
T Consensus 91 ~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 9999999776 56676 7899999999999999854 56664 88889999988776644
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.46 E-value=2.3e-13 Score=129.38 Aligned_cols=111 Identities=17% Similarity=0.119 Sum_probs=81.8
Q ss_pred CcceEEccCCCCCccccc-cCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEe
Q 003435 637 SLSSLVVDNFPELNCLSD-KTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDI 715 (820)
Q Consensus 637 ~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L 715 (820)
+|++|++++|.+.+..+. .+..+++|++|+|++|.+.+..|..+..+++|++|++++|.+.+..+..+.++++|++|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 677777777777665553 3677777777777777777766677777777777777777777666666777777777777
Q ss_pred cCCCCCCccccccCCCCCccEEEeccCCCccc
Q 003435 716 VECPRLVHIPDIMGQHSSLLELSIEGCPMLKL 747 (820)
Q Consensus 716 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 747 (820)
++|++.+..|..+..+++|++|++++|++...
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 77777777777777777777777777776653
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.44 E-value=1.3e-14 Score=166.96 Aligned_cols=123 Identities=20% Similarity=0.250 Sum_probs=94.6
Q ss_pred CCCcccCCCCccEEEeecccccccCccccCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcc
Q 003435 273 SSSTIPRARKLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHL 352 (820)
Q Consensus 273 ~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L 352 (820)
++..+..+++|+.|++++|.+..++..+..+++|++|+|++|.++.+|..|+++++|++|+|++|.|+.+|..|++|++|
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL 295 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTC
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCC
Confidence 45667778888888888888888877766788888888888888888888888888888888888888888888888888
Q ss_pred cEEeccCCCCccccchhccCCCCCcEEecCCCCCccccCcccCC
Q 003435 353 QTLDLSNCYNLEELPKGICQLTNLRTLDISSCYSLTHMPLGIGK 396 (820)
Q Consensus 353 ~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~ 396 (820)
++|+|++|.+ +.+|..|+.+++|++|+|++|.+.+.+|..+..
T Consensus 296 ~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 296 KYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp SEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred CEEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 8888888654 477777888888888888888877777766544
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.42 E-value=1.9e-11 Score=130.87 Aligned_cols=55 Identities=15% Similarity=0.111 Sum_probs=24.5
Q ss_pred CCCCCcEEEEecCCCCCCCcccccCCCCccEEEecccccCCCCC--CCCCCCCcceeec
Q 003435 481 PPHNLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELPP--LGQLPNLKDLYVK 537 (820)
Q Consensus 481 ~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~--l~~l~~L~~L~L~ 537 (820)
.+++|+.+.+..+ ...++...|..+++|+.+.+..+ ++.++. +.++..|+.+.+.
T Consensus 160 ~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 160 TCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred ccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 3344455544332 23344444445555555555443 222222 4445555554443
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.42 E-value=2.4e-13 Score=141.80 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=90.4
Q ss_pred CCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCcccccccccCCCCcc-eEEEeCCchhhHHHhccccCCCcccc
Q 003435 707 FCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQ-RLVIKKCPQLERQRLMNALHESFDPI 785 (820)
Q Consensus 707 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~-~L~l~~~~~L~~~~~~~~~~~~~~~l 785 (820)
+++|++++|++|++....+..|.++++|+.|++.+| +..+.+.+|.+|++|+ .+++.+ .+.......|.++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-------~l~~I~~~aF~~c 296 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-------SVTAIEFGAFMGC 296 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-------TCCEECTTTTTTC
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-------cceEEchhhhhCC
Confidence 789999999999877766778999999999999998 6777788999999999 998875 3446678899999
Q ss_pred cCCceeEecCceeeeccCCCcccccchhhhhhc
Q 003435 786 AQMEVVSMTTLNLMADEVPTETDAGASLREKNK 818 (820)
Q Consensus 786 ~~L~~l~l~~~n~~~~~~~~~~~~~~~L~~L~L 818 (820)
.+|+.++++. |.++...+.+|.+|++|+.++.
T Consensus 297 ~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 297 DNLRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred ccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 9999999988 8888888899999999998863
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.42 E-value=8.7e-13 Score=125.26 Aligned_cols=125 Identities=14% Similarity=0.068 Sum_probs=81.4
Q ss_pred ceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCC
Q 003435 639 SSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVEC 718 (820)
Q Consensus 639 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n 718 (820)
+.+++++|.+.. +|..+ .++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 455666665443 33322 246677777776554 44556667777777777777766655666777777777777777
Q ss_pred CCCCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCc
Q 003435 719 PRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCP 767 (820)
Q Consensus 719 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 767 (820)
.+.+..|..|..+++|++|++++|.+.+..+..|..+++|+.|++++|+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 7666666667777777777777777666555566777777777777654
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.39 E-value=4.5e-13 Score=149.23 Aligned_cols=136 Identities=19% Similarity=0.191 Sum_probs=97.1
Q ss_pred cccCCCCccEEE-eecccccccCcc------ccC--CceeEEEEeCCCCCcccCccccCcccccEEeccCcccccccccc
Q 003435 276 TIPRARKLRTLL-FLTVKMENLSFP------CQE--FQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSI 346 (820)
Q Consensus 276 ~~~~~~~L~~L~-l~~n~~~~l~~~------~~~--l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~ 346 (820)
.+..+++|+.|+ ++.|.+..++.. +.. ...|++|+|++|.++.+|. |+.+++|++|+|++|.|+.+|..|
T Consensus 404 ~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~ 482 (567)
T 1dce_A 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPAL 482 (567)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGG
T ss_pred HHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhh
Confidence 345566677666 444433333211 111 1247788888888888876 888888888888888888888888
Q ss_pred ccCCcccEEeccCCCCccccchhccCCCCCcEEecCCCCCcccc-CcccCCCCCCCccCceeeCCcccc
Q 003435 347 SKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISSCYSLTHM-PLGIGKLRPLRKLPAFILGKQRFC 414 (820)
Q Consensus 347 ~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~~~~~~~~~~~ 414 (820)
+++++|++|+|++|.+.+ +| .++.+++|++|+|++|.+.+.. |..++.+++|+.|++..|.+...+
T Consensus 483 ~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 483 AALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 888888888888876655 66 6888888888888888766665 788888888888888777665543
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.38 E-value=2.7e-12 Score=120.43 Aligned_cols=110 Identities=14% Similarity=0.062 Sum_probs=49.6
Q ss_pred CCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEe
Q 003435 636 PSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDI 715 (820)
Q Consensus 636 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L 715 (820)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 34455555555444444334444444555555444444333333444444444444444444333333444444444444
Q ss_pred cCCCCCCccccccCCCCCccEEEeccCCCc
Q 003435 716 VECPRLVHIPDIMGQHSSLLELSIEGCPML 745 (820)
Q Consensus 716 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 745 (820)
++|.+.+..+..+..+++|++|++++|++.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 444444333333344444444444444443
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.38 E-value=9.4e-15 Score=140.05 Aligned_cols=142 Identities=23% Similarity=0.266 Sum_probs=119.2
Q ss_pred CceeEEEeeccCCC-----CcccCCCCccEEEeecccccccCccccCCceeEEEEeCCCCCcccCccccCcccccEEecc
Q 003435 261 TDIRHCTLVGDLSS-----STIPRARKLRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLS 335 (820)
Q Consensus 261 ~~~~~l~l~~~~~~-----~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls 335 (820)
.+++.+.+.+..+. ..+..+++|++|++++|.+..+| .+..+++|++|++++|.+..+|..+..+++|++|+|+
T Consensus 23 l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp TTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE
T ss_pred cchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECc
Confidence 35666677666432 26788999999999999999988 8889999999999999999999888889999999999
Q ss_pred CccccccccccccCCcccEEeccCCCCccccc-hhccCCCCCcEEecCCCCCccccCcc----------cCCCCCCCccC
Q 003435 336 HTYIRKIPGSISKLKHLQTLDLSNCYNLEELP-KGICQLTNLRTLDISSCYSLTHMPLG----------IGKLRPLRKLP 404 (820)
Q Consensus 336 ~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp-~~~~~l~~L~~L~L~~n~~~~~~p~~----------~~~l~~L~~L~ 404 (820)
+|.++.+| .+..+++|++|++++|.+....+ ..+..+++|++|++++|.+.+..|.. +..+++|+.|+
T Consensus 102 ~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 102 YNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 99999988 69999999999999987654322 46899999999999999876666653 67777777775
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.38 E-value=2.6e-12 Score=120.54 Aligned_cols=127 Identities=13% Similarity=0.087 Sum_probs=102.5
Q ss_pred cceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecC
Q 003435 638 LSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVE 717 (820)
Q Consensus 638 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~ 717 (820)
.+.++++++.+... |.. ..++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~-p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSV-PTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSC-CTT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccC-CCC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 46677777765543 322 236899999999987766666778899999999999987766666678899999999999
Q ss_pred CCCCCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCc
Q 003435 718 CPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCP 767 (820)
Q Consensus 718 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 767 (820)
|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 98887777778889999999999999887777777889999999998875
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=3.8e-13 Score=126.04 Aligned_cols=135 Identities=13% Similarity=0.039 Sum_probs=104.7
Q ss_pred ccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcc
Q 003435 631 SLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSL 710 (820)
Q Consensus 631 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 710 (820)
.+..+++|+.|++++|.+... +......++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 455678899999999987754 44333344899999999987764 578889999999999998765544455889999
Q ss_pred cEEEecCCCCCCcccc--ccCCCCCccEEEeccCCCcccccc----cccCCCCcceEEEeCCchhh
Q 003435 711 QKLDIVECPRLVHIPD--IMGQHSSLLELSIEGCPMLKLSLK----SIEFLGQLQRLVIKKCPQLE 770 (820)
Q Consensus 711 ~~L~L~~n~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~l~~~~~L~ 770 (820)
++|++++|++ +.+|. .+..+++|+.|++++|++.. .|. .+..+++|+.|++++|+.-.
T Consensus 91 ~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 91 TELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999999977 45565 78889999999999999775 444 37888999999988876443
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.35 E-value=3.3e-11 Score=128.11 Aligned_cols=236 Identities=11% Similarity=-0.001 Sum_probs=147.8
Q ss_pred CCcEEEEecCCCCCCCcccccCCCCccEEEecccccCCCCC--CCCCCCCcceeeccCcCceEeCccccCCCcccCCCCc
Q 003435 484 NLKVLDLKGYRGSVFPSWLNSGVPNLVKVSLVDCTCQELPP--LGQLPNLKDLYVKGMSAVQIIGYKFYGNDAIRGFPSL 561 (820)
Q Consensus 484 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~l~~--l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~L 561 (820)
+|+.+.+..+ +..++...|.. .+|+.+.+.+ .++.++. |.++++|+.+++.+|.+..+....|. ..+|
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-------~~~L 205 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-------YAGI 205 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-------TCCC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-------eccc
Confidence 5666766554 56666666655 3677877775 4555554 77778888888877777666544332 2455
Q ss_pred ceeecCCCcccccccccccCCCccCCCCCCCCCcccEEEEcCCCCCCCCCCCCCcCceEecccCCccccccCCCCCcceE
Q 003435 562 KLLQLFDMPNLMEWKGQMTEGTDEFDGMQEPFPCLEKLVVEGCSMLNTLPFIRNLKNLALCNSNDKLVCSLSRFPSLSSL 641 (820)
Q Consensus 562 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L 641 (820)
+.+.+.+ +++.+. ...+..+++|+.+++.++ ...+ ....|.+ .+|+.+
T Consensus 206 ~~l~lp~--~l~~I~----------~~aF~~~~~L~~l~l~~~--l~~I-----------------~~~aF~~-~~L~~i 253 (401)
T 4fdw_A 206 EEVLLPV--TLKEIG----------SQAFLKTSQLKTIEIPEN--VSTI-----------------GQEAFRE-SGITTV 253 (401)
T ss_dssp SEEECCT--TCCEEC----------TTTTTTCTTCCCEECCTT--CCEE-----------------CTTTTTT-CCCSEE
T ss_pred CEEEeCC--chheeh----------hhHhhCCCCCCEEecCCC--ccCc-----------------ccccccc-CCccEE
Confidence 5555532 122221 233445555666655442 1111 1224444 567777
Q ss_pred EccCCCCCccccccCCCCCCccEEEEccCCCc-----cchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEec
Q 003435 642 VVDNFPELNCLSDKTGNLNSLVKLTVNECDNL-----ESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIV 716 (820)
Q Consensus 642 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~-----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~ 716 (820)
.+.+ .+.......|.++++|+.+++.++... ...+.+|.+|++|+.+.+.+ .+...-..+|.+|++|+.++|.
T Consensus 254 ~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 254 KLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp EEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEEC
T ss_pred EeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEEC
Confidence 7743 345555667788888888888776543 23344788888888888874 3444445677788888888886
Q ss_pred CCCCCCccccccCCCCCccEEEeccCCCcccccccccCCC-CcceEEEeC
Q 003435 717 ECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLG-QLQRLVIKK 765 (820)
Q Consensus 717 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~ 765 (820)
++ +...-+..|.++ +|+.+++++|......+..|.+++ +++.|.+..
T Consensus 332 ~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 332 AN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp TT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred cc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 65 544445677777 888888888877776667777774 677777765
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.33 E-value=1.3e-12 Score=150.57 Aligned_cols=123 Identities=22% Similarity=0.202 Sum_probs=100.9
Q ss_pred eecccccccCccccCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEEeccCCCCccccc
Q 003435 288 FLTVKMENLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSNCYNLEELP 367 (820)
Q Consensus 288 l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp 367 (820)
+..|.+...+..|..++.|++|+|++|.+..+|..+..+++|++|+|++|.|+.+|..|++|++|++|+|++|.+. .+|
T Consensus 208 ~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp 286 (727)
T 4b8c_D 208 DIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLP 286 (727)
T ss_dssp --------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCC
T ss_pred ccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccC
Confidence 3344445444458999999999999999999998888999999999999999999999999999999999998866 889
Q ss_pred hhccCCCCCcEEecCCCCCccccCcccCCCCCCCccCceeeCCcc
Q 003435 368 KGICQLTNLRTLDISSCYSLTHMPLGIGKLRPLRKLPAFILGKQR 412 (820)
Q Consensus 368 ~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~ 412 (820)
..|+.+++|++|+|++|.+ +.+|..|+++++|+.|++..|.+..
T Consensus 287 ~~~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp SSGGGGTTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred hhhcCCCCCCEEECCCCCC-CccChhhhcCCCccEEeCCCCccCC
Confidence 9999999999999999974 5889999999999999887776653
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.33 E-value=8.6e-11 Score=125.73 Aligned_cols=102 Identities=11% Similarity=-0.001 Sum_probs=58.3
Q ss_pred ccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcc
Q 003435 631 SLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSL 710 (820)
Q Consensus 631 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 710 (820)
.+..+.+|+.+.+.++ +......+|.++++|+.++|..+ ....-..+|.+|.+|+.+.+..+ +...-..+|.+|++|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 3445566666666543 33333445666667777666543 22222346677777777777654 333344567777777
Q ss_pred cEEEecCCCCCCccccccCCCCCccEE
Q 003435 711 QKLDIVECPRLVHIPDIMGQHSSLLEL 737 (820)
Q Consensus 711 ~~L~L~~n~~~~~~~~~~~~l~~L~~L 737 (820)
+.+++..+ ...+...|.++++|+.+
T Consensus 369 ~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 369 KKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred CEEEECCC--CEEhhheecCCCCCcEE
Confidence 77777654 23334556667766654
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.32 E-value=3.7e-11 Score=127.74 Aligned_cols=170 Identities=8% Similarity=0.090 Sum_probs=110.7
Q ss_pred CCcCceEecccC-CccccccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeec
Q 003435 614 RNLKNLALCNSN-DKLVCSLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSIL 692 (820)
Q Consensus 614 ~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 692 (820)
.+|+.+.+..+- ......|.++++|+.+++.++ +......+|.+ .+|+.+.+.++ +...-..+|.+|++|+.+++.
T Consensus 203 ~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 203 AGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTY 279 (401)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEE
T ss_pred cccCEEEeCCchheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeC
Confidence 444555544332 223346777888888888764 34444556666 67888888543 444445578888888888887
Q ss_pred cCccc-----ccCccccCCCCcccEEEecCCCCCCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCc
Q 003435 693 HCDKL-----ESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCP 767 (820)
Q Consensus 693 ~n~~~-----~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 767 (820)
+|... ...+.+|.+|++|+.+++.++ +...-...|.++++|+.+++.++ +..+...+|.++ +|+.+++.++.
T Consensus 280 ~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 280 GSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp SSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred CccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 76543 244567778888888888743 54444567788888888888655 555566778888 88888887642
Q ss_pred hhhHHHhccccCCCccccc-CCceeEecC
Q 003435 768 QLERQRLMNALHESFDPIA-QMEVVSMTT 795 (820)
Q Consensus 768 ~L~~~~~~~~~~~~~~~l~-~L~~l~l~~ 795 (820)
........|.+++ .++.+++..
T Consensus 357 ------~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 357 ------PPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp ------CCBCCCSSCCCSCTTCCEEEECG
T ss_pred ------CcccccccccCCCCCccEEEeCH
Confidence 2233455566663 577777766
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.30 E-value=5.7e-12 Score=116.87 Aligned_cols=103 Identities=21% Similarity=0.184 Sum_probs=83.2
Q ss_pred ccEEEeecccccccCccccCCceeEEEEeCCCCCccc-CccccCcccccEEeccCccccccc-cccccCCcccEEeccCC
Q 003435 283 LRTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKL-PDSIGTLKHLRYLDLSHTYIRKIP-GSISKLKHLQTLDLSNC 360 (820)
Q Consensus 283 L~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp-~~~~~L~~L~~L~L~~n 360 (820)
.+.+++++|.+..+|..+. ++|++|+|++|.++.+ |..|.++++|++|+|++|.|+.+| ..|..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4678888888888887653 7788899999988877 566888889999999999888886 45688889999999888
Q ss_pred CCccccchhccCCCCCcEEecCCCCCc
Q 003435 361 YNLEELPKGICQLTNLRTLDISSCYSL 387 (820)
Q Consensus 361 ~~~~~lp~~~~~l~~L~~L~L~~n~~~ 387 (820)
.+.+..+..|..+++|++|+|++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 776655556888888999999888754
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.29 E-value=6.5e-12 Score=116.86 Aligned_cols=102 Identities=19% Similarity=0.166 Sum_probs=83.4
Q ss_pred cEEEeecccccccCccccCCceeEEEEeCCCCCccc-CccccCcccccEEeccCcccccccc-ccccCCcccEEeccCCC
Q 003435 284 RTLLFLTVKMENLSFPCQEFQCLRVLDLGQSGIIKL-PDSIGTLKHLRYLDLSHTYIRKIPG-SISKLKHLQTLDLSNCY 361 (820)
Q Consensus 284 ~~L~l~~n~~~~l~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~-~~~~L~~L~~L~L~~n~ 361 (820)
+.+++++|.+..+|..+. ++|++|+|++|.+..+ |..|.++++|++|+|++|.|+.+|. .|.++++|++|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 678888888888887654 7888999999999877 5678889999999999999998864 46889999999999877
Q ss_pred CccccchhccCCCCCcEEecCCCCCc
Q 003435 362 NLEELPKGICQLTNLRTLDISSCYSL 387 (820)
Q Consensus 362 ~~~~lp~~~~~l~~L~~L~L~~n~~~ 387 (820)
+.+..+..|..+++|++|+|++|.+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 66555555888999999999988743
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.25 E-value=1.3e-11 Score=114.48 Aligned_cols=107 Identities=20% Similarity=0.162 Sum_probs=93.3
Q ss_pred eeEEEEeCCCCCcccCccccCcccccEEeccCcccccc-ccccccCCcccEEeccCCCCccccchhccCCCCCcEEecCC
Q 003435 305 CLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKI-PGSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISS 383 (820)
Q Consensus 305 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~ 383 (820)
..+++++++|.++.+|..+. ++|++|+|++|.|+.+ |..|.++++|++|+|++|.+.+..+..|..+++|++|+|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 46789999999999998764 8999999999999988 67899999999999999887766666689999999999999
Q ss_pred CCCccccCcccCCCCCCCccCceeeCCccc
Q 003435 384 CYSLTHMPLGIGKLRPLRKLPAFILGKQRF 413 (820)
Q Consensus 384 n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~ 413 (820)
|.+.+..+..|..+++|+.|++..|.....
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 997766666799999999998888766543
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.24 E-value=1.5e-11 Score=114.47 Aligned_cols=107 Identities=19% Similarity=0.181 Sum_probs=91.8
Q ss_pred eEEEEeCCCCCcccCccccCcccccEEeccCcccccc-ccccccCCcccEEeccCCCCccccchhccCCCCCcEEecCCC
Q 003435 306 LRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKI-PGSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISSC 384 (820)
Q Consensus 306 L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n 384 (820)
-+.+++++|++..+|..+. ++|++|+|++|.|+.+ |..|+++++|++|+|++|.+.+..+..|+++++|++|+|++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 4789999999999998775 8999999999999988 678999999999999998876655555789999999999999
Q ss_pred CCccccCcccCCCCCCCccCceeeCCcccc
Q 003435 385 YSLTHMPLGIGKLRPLRKLPAFILGKQRFC 414 (820)
Q Consensus 385 ~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~ 414 (820)
.+.+..+..|..+++|+.|++..|.+...+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 866555556999999999988887765444
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.20 E-value=1.3e-13 Score=132.16 Aligned_cols=126 Identities=22% Similarity=0.211 Sum_probs=102.6
Q ss_pred CccEEEeecc--cccccCccccCCceeEEEEeCCCCCcccCccccCcccccEEeccCccccccccccccCCcccEEeccC
Q 003435 282 KLRTLLFLTV--KMENLSFPCQEFQCLRVLDLGQSGIIKLPDSIGTLKHLRYLDLSHTYIRKIPGSISKLKHLQTLDLSN 359 (820)
Q Consensus 282 ~L~~L~l~~n--~~~~l~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~ 359 (820)
.++...+.+. .++.+|..|..+++|++|++++|.+..+| .+..+++|++|++++|.++.+|..+..+++|++|++++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence 3444444443 45555557888999999999999999998 89999999999999999999999899999999999999
Q ss_pred CCCccccchhccCCCCCcEEecCCCCCccccC-cccCCCCCCCccCceeeCC
Q 003435 360 CYNLEELPKGICQLTNLRTLDISSCYSLTHMP-LGIGKLRPLRKLPAFILGK 410 (820)
Q Consensus 360 n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~~~~~~~ 410 (820)
|.+.+ +| .++.+++|++|++++|.+....+ ..+..+++|+.|++..+..
T Consensus 103 N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 103 NQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 87655 66 58999999999999998554322 4688888888887766654
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.09 E-value=1.3e-08 Score=108.74 Aligned_cols=126 Identities=13% Similarity=0.078 Sum_probs=60.6
Q ss_pred ccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcc
Q 003435 631 SLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSL 710 (820)
Q Consensus 631 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 710 (820)
.|.++.+|+.+.+.++. .......|.++++|+.+.+... .......+|.++.+|+.+.+..+ +......+|.+|++|
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEeccccc-ceecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 45566666666665432 2233445566666666666432 22222335666666666666543 222333455556666
Q ss_pred cEEEecCCCCCCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEE
Q 003435 711 QKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVI 763 (820)
Q Consensus 711 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 763 (820)
+.+.+..+ +...-...|.++++|+.+++.++... ...+..+.+|+.+.+
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPV 385 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC-----
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEe
Confidence 66666443 33333345555666666666554321 123444455555544
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.02 E-value=1.9e-08 Score=107.51 Aligned_cols=107 Identities=11% Similarity=0.089 Sum_probs=59.5
Q ss_pred ccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcc
Q 003435 631 SLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSL 710 (820)
Q Consensus 631 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 710 (820)
.|.++++|+.+.+.. .+.......|.++.+|+.++|..+ ....-..+|.+|.+|+.+.+..+ +...-..+|.+|++|
T Consensus 283 aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 283 AFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL 359 (394)
T ss_dssp TTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred ccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC
Confidence 455666666666643 233444456777777777777653 33333446777777777777654 333345577777788
Q ss_pred cEEEecCCCCCCccccccCCCCCccEEEeccCC
Q 003435 711 QKLDIVECPRLVHIPDIMGQHSSLLELSIEGCP 743 (820)
Q Consensus 711 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 743 (820)
+.+++.++... ...+..+.+|+.+.+..+.
T Consensus 360 ~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 360 NNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CEEEESSCHHH---HHTCBCCCCC---------
T ss_pred CEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence 88877776321 1345566777777776554
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.99 E-value=6.7e-10 Score=116.75 Aligned_cols=100 Identities=20% Similarity=0.147 Sum_probs=68.8
Q ss_pred EEEeecc-cccccCccccCCceeEEEEeCC-CCCcccC-ccccCcccccEEeccCcccccc-ccccccCCcccEEeccCC
Q 003435 285 TLLFLTV-KMENLSFPCQEFQCLRVLDLGQ-SGIIKLP-DSIGTLKHLRYLDLSHTYIRKI-PGSISKLKHLQTLDLSNC 360 (820)
Q Consensus 285 ~L~l~~n-~~~~l~~~~~~l~~L~~L~L~~-n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~l-p~~~~~L~~L~~L~L~~n 360 (820)
.++.+++ .+..+|. +..+++|++|+|++ |.+..+| ..|+++++|++|+|++|.|+.+ |..|.+|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3466666 6777777 77777777777775 7777765 4577777777777777777766 356777777777777776
Q ss_pred CCccccchhccCCCCCcEEecCCCCC
Q 003435 361 YNLEELPKGICQLTNLRTLDISSCYS 386 (820)
Q Consensus 361 ~~~~~lp~~~~~l~~L~~L~L~~n~~ 386 (820)
.+.+..+..+..++ |+.|+|++|.+
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCc
Confidence 65544444444444 77777777753
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.94 E-value=1.5e-09 Score=114.03 Aligned_cols=103 Identities=14% Similarity=0.040 Sum_probs=87.8
Q ss_pred EEEeCCC-CCcccCccccCcccccEEeccC-ccccccc-cccccCCcccEEeccCCCCccccchhccCCCCCcEEecCCC
Q 003435 308 VLDLGQS-GIIKLPDSIGTLKHLRYLDLSH-TYIRKIP-GSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISSC 384 (820)
Q Consensus 308 ~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~-n~i~~lp-~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n 384 (820)
.++++++ +++.+|. +..+++|++|+|++ |.|+.+| ..|++|++|++|+|++|.+.+..|..|+++++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4688988 9999999 99999999999996 9999886 78999999999999999988888888999999999999999
Q ss_pred CCccccCcccCCCCCCCccCceeeCCcc
Q 003435 385 YSLTHMPLGIGKLRPLRKLPAFILGKQR 412 (820)
Q Consensus 385 ~~~~~~p~~~~~l~~L~~L~~~~~~~~~ 412 (820)
.+.+..+..+..++ |+.|++..+.+..
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 86654444555555 8888777665543
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.89 E-value=2.8e-11 Score=127.31 Aligned_cols=155 Identities=11% Similarity=-0.020 Sum_probs=105.3
Q ss_pred CCCcCceEecccCCcc--cc----ccC-CCCCcceEEccCCCCCcccccc-CCCCCCccEEEEccCCCccchhhhc----
Q 003435 613 IRNLKNLALCNSNDKL--VC----SLS-RFPSLSSLVVDNFPELNCLSDK-TGNLNSLVKLTVNECDNLESLFVFM---- 680 (820)
Q Consensus 613 l~~L~~L~l~~~~~~~--~~----~~~-~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~---- 680 (820)
.+.|+.|++++|.... .. .+. ..++|++|+|++|.+....... ...+++|++|+|++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4678888888887321 11 122 3368889999988876533222 2345678889999887765433322
Q ss_pred -CCCCCcceEeeccCcccc----cCccccCCCCcccEEEecCCCCCCc----cccccCCCCCccEEEeccCCCccc----
Q 003435 681 -QSFSSLRHLSILHCDKLE----SLPMSLEKFCSLQKLDIVECPRLVH----IPDIMGQHSSLLELSIEGCPMLKL---- 747 (820)
Q Consensus 681 -~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~---- 747 (820)
...++|++|+|++|.+.. .++..+..+++|++|+|++|.+... ++..+...++|++|++++|.+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 456788999999887643 2444556788899999998876542 345566778899999999887653
Q ss_pred ccccccCCCCcceEEEeCCc
Q 003435 748 SLKSIEFLGQLQRLVIKKCP 767 (820)
Q Consensus 748 ~~~~~~~l~~L~~L~l~~~~ 767 (820)
++..+...++|++|++++|+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHhCCCCCEEeccCCC
Confidence 33445566888888888874
No 154
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.86 E-value=1.1e-10 Score=122.82 Aligned_cols=160 Identities=16% Similarity=0.113 Sum_probs=117.5
Q ss_pred CCcccEEEEcCCCCCCC----C----C-CCCCcCceEecccCCcc--ccc-cCCCCCcceEEccCCCCCccccccC----
Q 003435 593 FPCLEKLVVEGCSMLNT----L----P-FIRNLKNLALCNSNDKL--VCS-LSRFPSLSSLVVDNFPELNCLSDKT---- 656 (820)
Q Consensus 593 ~~~L~~L~l~~~~~~~~----~----~-~l~~L~~L~l~~~~~~~--~~~-~~~l~~L~~L~l~~n~~~~~~~~~~---- 656 (820)
+++|+.|++++|.+... + . ..++|+.|++++|.... ... ...+++|++|+|++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 56799999999987541 1 1 13689999999997321 112 2345789999999999876443333
Q ss_pred -CCCCCccEEEEccCCCccc----hhhhcCCCCCcceEeeccCcccc----cCccccCCCCcccEEEecCCCCCCc----
Q 003435 657 -GNLNSLVKLTVNECDNLES----LFVFMQSFSSLRHLSILHCDKLE----SLPMSLEKFCSLQKLDIVECPRLVH---- 723 (820)
Q Consensus 657 -~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~L~~n~~~~~---- 723 (820)
...++|++|+|++|.+... ++..+..+++|++|+|++|.+.. .++..+...++|++|+|++|.+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3568999999999987553 34456788999999999998654 2355677788999999999988653
Q ss_pred cccccCCCCCccEEEeccCCCcccccccc
Q 003435 724 IPDIMGQHSSLLELSIEGCPMLKLSLKSI 752 (820)
Q Consensus 724 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 752 (820)
++..+...++|++|+|++|.+.......+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 34455567899999999999876443333
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.66 E-value=5.4e-06 Score=87.93 Aligned_cols=106 Identities=8% Similarity=0.060 Sum_probs=48.5
Q ss_pred cCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcccEEEecCCCCCCccccccCCCCCc
Q 003435 655 KTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSLQKLDIVECPRLVHIPDIMGQHSSL 734 (820)
Q Consensus 655 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 734 (820)
.+.++.+|+.+.+..+ ....-..++.++.+|+.+.+..+ +.......|.++++|+.+.+.++.+...-...|.++.+|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 3444445555554432 22222234445555555555432 222223344555555555555444433334455555555
Q ss_pred cEEEeccCCCcccccccccCCCCcceEEE
Q 003435 735 LELSIEGCPMLKLSLKSIEFLGQLQRLVI 763 (820)
Q Consensus 735 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 763 (820)
+.+.+..+ +..+-..+|.+|++|+.+.+
T Consensus 313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 313 SSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred CEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 55555433 33333445555555555544
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.60 E-value=2.1e-08 Score=104.34 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=26.4
Q ss_pred CCcccEEEecCCCCCCcccccc---CCCCCccEEEeccCCCccc----ccccccCCCCcceEEEeCC
Q 003435 707 FCSLQKLDIVECPRLVHIPDIM---GQHSSLLELSIEGCPMLKL----SLKSIEFLGQLQRLVIKKC 766 (820)
Q Consensus 707 l~~L~~L~L~~n~~~~~~~~~~---~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~ 766 (820)
+++|++|+|++|.+....+..+ ..+++|++|+|+.|.+... ++..+.++++|+.|++++|
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 4455555555554433222111 1244555555555554431 2223334455555555544
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.57 E-value=6e-06 Score=87.55 Aligned_cols=171 Identities=9% Similarity=0.012 Sum_probs=126.2
Q ss_pred ccCCCCCcceEEccCCCCCccccccCCCCCCccEEEEccCCCccchhhhcCCCCCcceEeeccCcccccCccccCCCCcc
Q 003435 631 SLSRFPSLSSLVVDNFPELNCLSDKTGNLNSLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLESLPMSLEKFCSL 710 (820)
Q Consensus 631 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 710 (820)
.+.....+..+.+.... .......+..+.+|+.+.+..+ .......++.++.+|+.+.+..+ +...-..++.++.+|
T Consensus 189 ~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l 265 (379)
T 4h09_A 189 SYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL 265 (379)
T ss_dssp ECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred cccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh
Confidence 44555666666655433 2334456777888999988764 33334457889999999999876 444456688899999
Q ss_pred cEEEecCCCCCCccccccCCCCCccEEEeccCCCcccccccccCCCCcceEEEeCCchhhHHHhccccCCCcccccCCce
Q 003435 711 QKLDIVECPRLVHIPDIMGQHSSLLELSIEGCPMLKLSLKSIEFLGQLQRLVIKKCPQLERQRLMNALHESFDPIAQMEV 790 (820)
Q Consensus 711 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~ 790 (820)
+.+.+..+ +...-...|.++++|+.+.+.++.+..+....|.++.+|+.+.+.+ .+......+|.+..+|+.
T Consensus 266 ~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-------~l~~I~~~aF~~C~~L~~ 337 (379)
T 4h09_A 266 KTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-------ALKTIQVYAFKNCKALST 337 (379)
T ss_dssp CEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-------TCCEECTTTTTTCTTCCC
T ss_pred cccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc-------cccEEHHHHhhCCCCCCE
Confidence 99999765 4444456789999999999999988887788999999999998853 345566788999999999
Q ss_pred eEecCceeeeccCCCcccccchhh
Q 003435 791 VSMTTLNLMADEVPTETDAGASLR 814 (820)
Q Consensus 791 l~l~~~n~~~~~~~~~~~~~~~L~ 814 (820)
+.+.. + ++..-..+|.+|+.++
T Consensus 338 i~ip~-~-v~~I~~~aF~~c~~~~ 359 (379)
T 4h09_A 338 ISYPK-S-ITLIESGAFEGSSITK 359 (379)
T ss_dssp CCCCT-T-CCEECTTTTTTSSCCC
T ss_pred EEECC-c-cCEEchhHhhCCCCCc
Confidence 99976 3 4444567777775443
No 158
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.57 E-value=3.8e-08 Score=102.36 Aligned_cols=155 Identities=16% Similarity=0.160 Sum_probs=98.6
Q ss_pred CCCcccEEEEcCCCCC---------CCC----CCCCCcCceEecccCCccccccCCCCCcceEEccCCCCCccccccC--
Q 003435 592 PFPCLEKLVVEGCSML---------NTL----PFIRNLKNLALCNSNDKLVCSLSRFPSLSSLVVDNFPELNCLSDKT-- 656 (820)
Q Consensus 592 ~~~~L~~L~l~~~~~~---------~~~----~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-- 656 (820)
.+++|+.|.+.+...- ..+ +.+|+|+.|.+.+|.+.....+ .+++|+.|++..|.+.......+
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~ 215 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILG 215 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHH
Confidence 5788999988664321 112 2367899999888753332333 37889999998877654433333
Q ss_pred CCCCCccEEEEccCCC-------ccchhhhc--CCCCCcceEeeccCcccccCcccc---CCCCcccEEEecCCCCCCc-
Q 003435 657 GNLNSLVKLTVNECDN-------LESLFVFM--QSFSSLRHLSILHCDKLESLPMSL---EKFCSLQKLDIVECPRLVH- 723 (820)
Q Consensus 657 ~~l~~L~~L~L~~n~~-------~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~L~~n~~~~~- 723 (820)
..+|+|+.|+|+.+.. ...+...+ ..+|+|++|++.+|.+....+..+ ..+++|++|+|+.|.+.+.
T Consensus 216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G 295 (362)
T 2ra8_A 216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG 295 (362)
T ss_dssp SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH
T ss_pred ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH
Confidence 3688899988863211 11122222 357889999998887654333222 2478899999988876653
Q ss_pred ---cccccCCCCCccEEEeccCCCccc
Q 003435 724 ---IPDIMGQHSSLLELSIEGCPMLKL 747 (820)
Q Consensus 724 ---~~~~~~~l~~L~~L~l~~n~~~~~ 747 (820)
++..+..+++|+.|++++|.+...
T Consensus 296 ~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 296 ARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp HHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHHHhhcccCCcceEEECCCCcCCHH
Confidence 333344578899999988876653
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.30 E-value=1.6e-07 Score=87.90 Aligned_cols=110 Identities=8% Similarity=0.067 Sum_probs=79.3
Q ss_pred ccCCCCccEEEeecc-cccc-----cCccccCCceeEEEEeCCCCCcc-----cCccccCcccccEEeccCccccc----
Q 003435 277 IPRARKLRTLLFLTV-KMEN-----LSFPCQEFQCLRVLDLGQSGIIK-----LPDSIGTLKHLRYLDLSHTYIRK---- 341 (820)
Q Consensus 277 ~~~~~~L~~L~l~~n-~~~~-----l~~~~~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~i~~---- 341 (820)
+...+.|+.|++++| .+.. +...+...+.|++|+|++|.+.. +...+...+.|++|+|++|.|+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 445778888888888 6654 33335667788889999888862 34556666788899999888873
Q ss_pred -cccccccCCcccEEec--cCCCCccc----cchhccCCCCCcEEecCCCCC
Q 003435 342 -IPGSISKLKHLQTLDL--SNCYNLEE----LPKGICQLTNLRTLDISSCYS 386 (820)
Q Consensus 342 -lp~~~~~L~~L~~L~L--~~n~~~~~----lp~~~~~l~~L~~L~L~~n~~ 386 (820)
+...+...++|++|+| ++|.+... +...+...++|++|++++|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 4567777888899998 66665543 344456678888888888863
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.28 E-value=3.7e-07 Score=82.70 Aligned_cols=38 Identities=21% Similarity=0.459 Sum_probs=19.3
Q ss_pred CccEEEeccCC-CcccccccccCCCCcceEEEeCCchhh
Q 003435 733 SLLELSIEGCP-MLKLSLKSIEFLGQLQRLVIKKCPQLE 770 (820)
Q Consensus 733 ~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~~~~L~ 770 (820)
+|++|+|++|. ++..--..+..+++|++|++++|+.++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 45555555554 222222234455666666666665554
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.24 E-value=1.6e-07 Score=92.14 Aligned_cols=63 Identities=21% Similarity=0.287 Sum_probs=28.8
Q ss_pred CceeEEEEeCCCCCcccC---ccccCcccccEEeccCccccccccccccCC--cccEEeccCCCCcccc
Q 003435 303 FQCLRVLDLGQSGIIKLP---DSIGTLKHLRYLDLSHTYIRKIPGSISKLK--HLQTLDLSNCYNLEEL 366 (820)
Q Consensus 303 l~~L~~L~L~~n~l~~lp---~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~--~L~~L~L~~n~~~~~l 366 (820)
+++|++|+|++|.++.++ ..+..+++|++|+|++|.|+.+. .+..+. +|++|+|++|.+.+.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCcccc
Confidence 444555555555554332 33344555555555555555441 122222 4555555554444433
No 162
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.15 E-value=5.5e-07 Score=84.26 Aligned_cols=112 Identities=16% Similarity=0.148 Sum_probs=54.2
Q ss_pred cCCCCCcceEEccCC-CCCcc----ccccCCCCCCccEEEEccCCCccc----hhhhcCCCCCcceEeeccCccccc---
Q 003435 632 LSRFPSLSSLVVDNF-PELNC----LSDKTGNLNSLVKLTVNECDNLES----LFVFMQSFSSLRHLSILHCDKLES--- 699 (820)
Q Consensus 632 ~~~l~~L~~L~l~~n-~~~~~----~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~--- 699 (820)
+...++|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344566666666666 54431 223344455666666666654432 122333445566666666554321
Q ss_pred -CccccCCCCcccEEEe--cCCCCCCc----cccccCCCCCccEEEeccCC
Q 003435 700 -LPMSLEKFCSLQKLDI--VECPRLVH----IPDIMGQHSSLLELSIEGCP 743 (820)
Q Consensus 700 -~~~~l~~l~~L~~L~L--~~n~~~~~----~~~~~~~l~~L~~L~l~~n~ 743 (820)
+...+...++|++|+| ++|.+... +...+...++|++|++++|.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 2334444455555555 44544332 22223334455555555554
No 163
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.12 E-value=2.1e-06 Score=77.69 Aligned_cols=86 Identities=14% Similarity=0.250 Sum_probs=44.2
Q ss_pred CccEEEEccCCCccchhhhcCCCCCcceEeeccCccccc-CccccCCC----CcccEEEecCCCCCC-ccccccCCCCCc
Q 003435 661 SLVKLTVNECDNLESLFVFMQSFSSLRHLSILHCDKLES-LPMSLEKF----CSLQKLDIVECPRLV-HIPDIMGQHSSL 734 (820)
Q Consensus 661 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l----~~L~~L~L~~n~~~~-~~~~~~~~l~~L 734 (820)
+|+.|++++|.+....-..+.++++|++|+|++|..++. .-..+..+ ++|++|+|++|...+ .--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 456666666654443333455566666666666643321 11223332 356666666665322 222334556677
Q ss_pred cEEEeccCCCcc
Q 003435 735 LELSIEGCPMLK 746 (820)
Q Consensus 735 ~~L~l~~n~~~~ 746 (820)
+.|++++|+..+
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 777777776443
No 164
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.11 E-value=3.9e-07 Score=89.44 Aligned_cols=104 Identities=15% Similarity=0.122 Sum_probs=75.9
Q ss_pred ccCCceeEE--EEeCCCCCcccCcc----ccCcccccEEeccCcccccc---ccccccCCcccEEeccCCCCccccchhc
Q 003435 300 CQEFQCLRV--LDLGQSGIIKLPDS----IGTLKHLRYLDLSHTYIRKI---PGSISKLKHLQTLDLSNCYNLEELPKGI 370 (820)
Q Consensus 300 ~~~l~~L~~--L~L~~n~l~~lp~~----~~~l~~L~~L~Ls~n~i~~l---p~~~~~L~~L~~L~L~~n~~~~~lp~~~ 370 (820)
|...+.|+. ++++.|....++.. ..++++|++|+|++|.|+.+ |..+..+++|++|+|++|.+.+. ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence 344455655 67777765544322 25689999999999999865 46778999999999999887654 234
Q ss_pred cCCC--CCcEEecCCCCCccccCc-------ccCCCCCCCccCc
Q 003435 371 CQLT--NLRTLDISSCYSLTHMPL-------GIGKLRPLRKLPA 405 (820)
Q Consensus 371 ~~l~--~L~~L~L~~n~~~~~~p~-------~~~~l~~L~~L~~ 405 (820)
..+. +|++|+|++|.+.+.+|. .+..+++|+.|+-
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 4444 999999999998776663 2566777777753
No 165
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.04 E-value=0.00011 Score=76.74 Aligned_cols=184 Identities=10% Similarity=0.041 Sum_probs=107.1
Q ss_pred ceEEEEEeCCCCCC-------hhhHHHHHhhccCCCCCcEEEEecCchHHHhhh-----------CCC-CeEeCCCCChH
Q 003435 12 RGFLIVLDDVWDED-------GENMEKALSWLNVGGSGSCVLVTTRSGRVASMM-----------GTV-PTQHLTCLSSE 72 (820)
Q Consensus 12 ~~~llvlDdv~~~~-------~~~~~~~~~~~~~~~~gs~iiiTtr~~~~~~~~-----------~~~-~~~~l~~l~~~ 72 (820)
++++|||||++... .+.+..+...+.. .++.++|+|++........ +.. ..+++.+|+.+
T Consensus 128 ~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~ 206 (350)
T 2qen_A 128 GEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKD 206 (350)
T ss_dssp SCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHH
T ss_pred CCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHH
Confidence 38999999996632 1223444333322 2578899999876542211 111 27999999999
Q ss_pred hHHHHHHHHhcCCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhcc-CCHHHHHH-hhhcchhchhccCcchhh-HHH
Q 003435 73 DSWVLFKHFAFGSVEDESTELEEIGQKIVAKCKGLPIAIKTIGSILRS-KDKEEWLS-VADCDLWTLLEFKSHVLP-VLK 149 (820)
Q Consensus 73 ~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~-k~~~~w~~-~~~~~~~~~~~~~~~i~~-~l~ 149 (820)
|+.+++............ .+.+.++++.|+|.|+++..++..+.. .+...|.. +.+. . ...+.. +-.
T Consensus 207 e~~~~l~~~~~~~~~~~~---~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~l~~ 276 (350)
T 2qen_A 207 TSVEFLKRGFREVNLDVP---ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV----A---KGLIMGELEE 276 (350)
T ss_dssp HHHHHHHHHHHTTTCCCC---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH----H---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHH----H---HHHHHHHHHH
Confidence 999999765321111111 346789999999999999999876532 22222211 1110 0 000111 111
Q ss_pred hhhcCCChhHHHHHhhhcCCCCCcccCHHHHHHHHHHcCCcccCCCCCcHHHHHHHHHHHHhhccccccc
Q 003435 150 RSYDNLPWHLKQCFAYCSIFPKDYWINKEKLVRLWVAEGFIRLDSGSEDLEETADDYFMELLQHSFFDNI 219 (820)
Q Consensus 150 ~sy~~L~~~~k~~fl~~a~f~~~~~i~~~~li~~w~~~gl~~~~~~~~~~~~~~~~~l~~L~~~~li~~~ 219 (820)
+.+ + ++..+.++..+|. +. .+...+........ ... .......++..|.+++++...
T Consensus 277 l~~-~-~~~~~~~l~~la~---g~-~~~~~l~~~~~~~~-~~~------~~~~~~~~l~~L~~~gli~~~ 333 (350)
T 2qen_A 277 LRR-R-SPRYVDILRAIAL---GY-NRWSLIRDYLAVKG-TKI------PEPRLYALLENLKKMNWIVEE 333 (350)
T ss_dssp HHH-H-CHHHHHHHHHHHT---TC-CSHHHHHHHHHHTT-CCC------CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHh-C-ChhHHHHHHHHHh---CC-CCHHHHHHHHHHHh-CCC------CHHHHHHHHHHHHhCCCEEec
Confidence 222 2 7888999999987 22 35555544432211 010 134567889999999998754
No 166
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.90 E-value=0.00012 Score=78.43 Aligned_cols=200 Identities=13% Similarity=0.065 Sum_probs=113.3
Q ss_pred HHHHHcC--CceEEEEEeCCCCC------ChhhHHHHHhhccCC---C--CCcEEEEecCchHHHhhhC---------CC
Q 003435 4 KLEVYWR--GRGFLIVLDDVWDE------DGENMEKALSWLNVG---G--SGSCVLVTTRSGRVASMMG---------TV 61 (820)
Q Consensus 4 ~l~~~l~--~~~~llvlDdv~~~------~~~~~~~~~~~~~~~---~--~gs~iiiTtr~~~~~~~~~---------~~ 61 (820)
.+.+.++ +++++|||||+|.- ..+.+..+..++... + ....||+|||+..+..... ..
T Consensus 128 ~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~ 207 (412)
T 1w5s_A 128 ALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIG 207 (412)
T ss_dssp HHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCS
T ss_pred HHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcC
Confidence 4555554 67999999999762 224444444443221 2 3455888888655332111 11
Q ss_pred CeEeCCCCChHhHHHHHHHHh---cCCCCCCChhHHHHHHHHHHHhc------CChHHHHHHHHh-hc-----cCC---H
Q 003435 62 PTQHLTCLSSEDSWVLFKHFA---FGSVEDESTELEEIGQKIVAKCK------GLPIAIKTIGSI-LR-----SKD---K 123 (820)
Q Consensus 62 ~~~~l~~l~~~~a~~Lf~~~~---~~~~~~~~~~~~~~~~~i~~~c~------glPlal~~~~~~-l~-----~k~---~ 123 (820)
..+++++++.++++++|...+ +.. .... .+.+..+++.|+ |.|..+..+... .. +.. .
T Consensus 208 ~~i~l~~l~~~e~~~ll~~~~~~~~~~-~~~~---~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~ 283 (412)
T 1w5s_A 208 FKLHLPAYKSRELYTILEQRAELGLRD-TVWE---PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSE 283 (412)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHBCT-TSCC---HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCH
T ss_pred CeeeeCCCCHHHHHHHHHHHHHhcCCC-CCCC---hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 239999999999999997653 322 1111 356788889999 999655544432 21 111 2
Q ss_pred HHHHHhhhcchhchhccCcch-hhHHHhhhcCCChhHHHHHhhhcCCC--CCcccCHHHHHHHHHHcC--CcccCCCCCc
Q 003435 124 EEWLSVADCDLWTLLEFKSHV-LPVLKRSYDNLPWHLKQCFAYCSIFP--KDYWINKEKLVRLWVAEG--FIRLDSGSED 198 (820)
Q Consensus 124 ~~w~~~~~~~~~~~~~~~~~i-~~~l~~sy~~L~~~~k~~fl~~a~f~--~~~~i~~~~li~~w~~~g--l~~~~~~~~~ 198 (820)
+.+..+.... . ...+.-+++.|+...|.++..+|.+. .+..+...++...+.... ..... ..
T Consensus 284 ~~v~~~~~~~----------~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 350 (412)
T 1w5s_A 284 DLVRKAVSEN----------EAASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVK---PR 350 (412)
T ss_dssp HHHHHHHHHC----------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCC---CC
T ss_pred HHHHHHHHHH----------hccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCC---CC
Confidence 2333222210 1 23455577889999999999888754 233455665554442110 11000 01
Q ss_pred HHHHHHHHHHHHhhcccccccc
Q 003435 199 LEETADDYFMELLQHSFFDNIV 220 (820)
Q Consensus 199 ~~~~~~~~l~~L~~~~li~~~~ 220 (820)
.......++..|.+.+++....
T Consensus 351 ~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 351 GYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEC
T ss_pred CHHHHHHHHHHHHhCCCEEeec
Confidence 1344667899999999997653
No 167
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.87 E-value=0.00017 Score=75.63 Aligned_cols=184 Identities=14% Similarity=0.055 Sum_probs=106.2
Q ss_pred ceEEEEEeCCCCCC----hhhHHHHHhhccCCCCCcEEEEecCchHHHhhh-----------CC-CCeEeCCCCChHhHH
Q 003435 12 RGFLIVLDDVWDED----GENMEKALSWLNVGGSGSCVLVTTRSGRVASMM-----------GT-VPTQHLTCLSSEDSW 75 (820)
Q Consensus 12 ~~~llvlDdv~~~~----~~~~~~~~~~~~~~~~gs~iiiTtr~~~~~~~~-----------~~-~~~~~l~~l~~~~a~ 75 (820)
++++|||||++..+ .+-+..+...+. ..++.++|+|+|........ +. ...+++++|+.+|+.
T Consensus 137 ~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~-~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~ 215 (357)
T 2fna_A 137 DNVIIVLDEAQELVKLRGVNLLPALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAI 215 (357)
T ss_dssp SCEEEEEETGGGGGGCTTCCCHHHHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHH
T ss_pred CCeEEEEECHHHhhccCchhHHHHHHHHHH-cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHH
Confidence 48999999996521 122233332222 22478899999986543211 11 137999999999999
Q ss_pred HHHHHHhcCCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhccC-CHHHHHHhhhcchhchhccCcchhhHH-Hhhhc
Q 003435 76 VLFKHFAFGSVEDESTELEEIGQKIVAKCKGLPIAIKTIGSILRSK-DKEEWLSVADCDLWTLLEFKSHVLPVL-KRSYD 153 (820)
Q Consensus 76 ~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~k-~~~~w~~~~~~~~~~~~~~~~~i~~~l-~~sy~ 153 (820)
+++.......... .+.. .++++.|+|.|+++..++..+..+ ....|...... .. ...+...+ .+.++
T Consensus 216 ~~l~~~~~~~~~~-~~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~l~~~~~~ 284 (357)
T 2fna_A 216 EFLRRGFQEADID-FKDY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLE---YA---KKLILKEFENFLHG 284 (357)
T ss_dssp HHHHHHHHHHTCC-CCCH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHH---HH---HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCC-CCcH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHH---HH---HHHHHHHHHHHhhc
Confidence 9998753211111 1111 789999999999999999876432 23333211100 00 00011111 12222
Q ss_pred --CCChhHHHHHhhhcCCCCCcccCHHHHHHHHH-HcCCcccCCCCCcHHHHHHHHHHHHhhccccccc
Q 003435 154 --NLPWHLKQCFAYCSIFPKDYWINKEKLVRLWV-AEGFIRLDSGSEDLEETADDYFMELLQHSFFDNI 219 (820)
Q Consensus 154 --~L~~~~k~~fl~~a~f~~~~~i~~~~li~~w~-~~gl~~~~~~~~~~~~~~~~~l~~L~~~~li~~~ 219 (820)
.+++..|..+..+|+ +. +...+..... ..|. .........++..|.+++++...
T Consensus 285 ~~~l~~~~~~~l~~la~---g~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~ 341 (357)
T 2fna_A 285 REIARKRYLNIMRTLSK---CG--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKE 341 (357)
T ss_dssp CGGGHHHHHHHHHHHTT---CB--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEES
T ss_pred cccccHHHHHHHHHHHc---CC--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEec
Confidence 577889999999998 22 4444443221 1121 00134467789999999998754
No 168
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.39 E-value=0.00075 Score=66.15 Aligned_cols=106 Identities=15% Similarity=0.088 Sum_probs=76.3
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchHHHh-h-hCCCCeEeCCCCChHhHHHHHHHHhcCCCC
Q 003435 10 RGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGRVAS-M-MGTVPTQHLTCLSSEDSWVLFKHFAFGSVE 87 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~~~~-~-~~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~ 87 (820)
.+++.+||+||++.-..+.++.+...+.....+.+||+||+...... . ......+++++++.+|..+++...+.....
T Consensus 124 ~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~ 203 (250)
T 1njg_A 124 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 203 (250)
T ss_dssp SSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC
T ss_pred cCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 35679999999977666777888777766567888999887644221 1 122247999999999999999887643222
Q ss_pred CCChhHHHHHHHHHHHhcCChHHHHHHHHhh
Q 003435 88 DESTELEEIGQKIVAKCKGLPIAIKTIGSIL 118 (820)
Q Consensus 88 ~~~~~~~~~~~~i~~~c~glPlal~~~~~~l 118 (820)
... .+....+++.|+|.|..+..+...+
T Consensus 204 ~~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 204 AHE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 112 3557889999999999988776543
No 169
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.23 E-value=0.0098 Score=62.65 Aligned_cols=194 Identities=17% Similarity=0.036 Sum_probs=111.6
Q ss_pred HHHHHHcCCceEEEEEeCCCCCChhhHHHH-HhhccCCCCCcEEEEecCchH--------HHhhhCCCCeEeCCCCChHh
Q 003435 3 WKLEVYWRGRGFLIVLDDVWDEDGENMEKA-LSWLNVGGSGSCVLVTTRSGR--------VASMMGTVPTQHLTCLSSED 73 (820)
Q Consensus 3 ~~l~~~l~~~~~llvlDdv~~~~~~~~~~~-~~~~~~~~~gs~iiiTtr~~~--------~~~~~~~~~~~~l~~l~~~~ 73 (820)
+.+.+.++.++.+|||||++.-....+... ...+.....+.+||+||+... +...++ ..+++++++.++
T Consensus 124 ~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~l~~~l~sr~~--~~i~l~~l~~~~ 201 (384)
T 2qby_B 124 DKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDYMEPRVLSSLG--PSVIFKPYDAEQ 201 (384)
T ss_dssp HHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTTSCHHHHHTCC--CEEEECCCCHHH
T ss_pred HHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhhhCHHHHhcCC--CeEEECCCCHHH
Confidence 456667777777999999965211111111 222211116888999998752 222222 289999999999
Q ss_pred HHHHHHHHhc---CCCCCCChhHHHHHHHHHHHhc---CChH-HHHHHHHhh--c-c-C--CHHHHHHhhhcchhchhcc
Q 003435 74 SWVLFKHFAF---GSVEDESTELEEIGQKIVAKCK---GLPI-AIKTIGSIL--R-S-K--DKEEWLSVADCDLWTLLEF 140 (820)
Q Consensus 74 a~~Lf~~~~~---~~~~~~~~~~~~~~~~i~~~c~---glPl-al~~~~~~l--~-~-k--~~~~w~~~~~~~~~~~~~~ 140 (820)
..++|...+. ... ...+ +....+++.|+ |-|- |+.++-.+. . + . ..+.+..++...
T Consensus 202 ~~~il~~~~~~~~~~~-~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~------- 270 (384)
T 2qby_B 202 LKFILSKYAEYGLIKG-TYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDY------- 270 (384)
T ss_dssp HHHHHHHHHHHTSCTT-SCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHhhcccC-CcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH-------
Confidence 9999998742 221 1222 34667777887 8776 554444333 1 1 1 156666555432
Q ss_pred CcchhhHHHhhhcCCChhHHHHHhhhcCCCCC-cccCHHHHHHHHHHcCCcccCCCCCcHHHHHHHHHHHHhhccccccc
Q 003435 141 KSHVLPVLKRSYDNLPWHLKQCFAYCSIFPKD-YWINKEKLVRLWVAEGFIRLDSGSEDLEETADDYFMELLQHSFFDNI 219 (820)
Q Consensus 141 ~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~-~~i~~~~li~~w~~~gl~~~~~~~~~~~~~~~~~l~~L~~~~li~~~ 219 (820)
....+.-+++.++...|..+..++. ... .++. +.........|. . .........++..|...+++...
T Consensus 271 ---~~~~~~~~~~~l~~~~~~~l~al~~-~~~~~~~~-~~~~~~~~~~g~-~-----~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 271 ---EQERLIEAVKALPFHYKLALRSLIE-SEDVMSAH-KMYTDLCNKFKQ-K-----PLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp ---HHHHHHHHHHSSCHHHHHHHHHHHT-CCBHHHHH-HHHHHHHHHTTC-C-----CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ---hcchHHHHHHcCCHHHHHHHHHHHH-hcccChHH-HHHHHHHHHcCC-C-----CCCHHHHHHHHHHHHhCCCEEEE
Confidence 1234667788999988888887876 221 1111 111122222231 1 11245567889999999999764
Q ss_pred c
Q 003435 220 V 220 (820)
Q Consensus 220 ~ 220 (820)
.
T Consensus 340 ~ 340 (384)
T 2qby_B 340 I 340 (384)
T ss_dssp E
T ss_pred e
Confidence 3
No 170
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.17 E-value=0.016 Score=60.95 Aligned_cols=216 Identities=13% Similarity=0.017 Sum_probs=119.2
Q ss_pred HHHHHHc--CCceEEEEEeCCCCCC-----hhhHHHHHhhccCC--CCCcEEEEecCch--------HHHhhhCCCCeEe
Q 003435 3 WKLEVYW--RGRGFLIVLDDVWDED-----GENMEKALSWLNVG--GSGSCVLVTTRSG--------RVASMMGTVPTQH 65 (820)
Q Consensus 3 ~~l~~~l--~~~~~llvlDdv~~~~-----~~~~~~~~~~~~~~--~~gs~iiiTtr~~--------~~~~~~~~~~~~~ 65 (820)
+.+.+.+ .+++++||||+++.-. ++.+..+..+.... ..+..+|+||+.. .+...++. ..++
T Consensus 119 ~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~-~~i~ 197 (387)
T 2v1u_A 119 ERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGE-VELV 197 (387)
T ss_dssp HHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTS-EECC
T ss_pred HHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCC-eEEe
Confidence 3445555 4568999999996521 12222233322211 3466788888765 23232222 3799
Q ss_pred CCCCChHhHHHHHHHHhc---CCCCCCChhHHHHHHHHHHHhc---CCh-HHHHHHHHhhc-----cCC---HHHHHHhh
Q 003435 66 LTCLSSEDSWVLFKHFAF---GSVEDESTELEEIGQKIVAKCK---GLP-IAIKTIGSILR-----SKD---KEEWLSVA 130 (820)
Q Consensus 66 l~~l~~~~a~~Lf~~~~~---~~~~~~~~~~~~~~~~i~~~c~---glP-lal~~~~~~l~-----~k~---~~~w~~~~ 130 (820)
+++++.++..+++...+. .... ..+ +....++++++ |.| .|+.++..+.. ++. .+.+..++
T Consensus 198 l~~l~~~~~~~il~~~~~~~~~~~~-~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~ 273 (387)
T 2v1u_A 198 FPPYTAPQLRDILETRAEEAFNPGV-LDP---DVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSAR 273 (387)
T ss_dssp BCCCCHHHHHHHHHHHHHHHBCTTT-BCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHhhccCCC-CCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 999999999999988742 2211 122 34677788887 999 44444433321 212 45555444
Q ss_pred hcchhchhccCcchhhHHHhhhcCCChhHHHHHhhhcCCCCC-cccCHHHHHHHHH----HcCCcccCCCCCcHHHHHHH
Q 003435 131 DCDLWTLLEFKSHVLPVLKRSYDNLPWHLKQCFAYCSIFPKD-YWINKEKLVRLWV----AEGFIRLDSGSEDLEETADD 205 (820)
Q Consensus 131 ~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~-~~i~~~~li~~w~----~~gl~~~~~~~~~~~~~~~~ 205 (820)
... ....+.-++..++...+..++.++....+ ..+....+.+... ..|. . ......+..
T Consensus 274 ~~~----------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~ 337 (387)
T 2v1u_A 274 AEI----------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGL-E-----HVTLRRVSG 337 (387)
T ss_dssp HHH----------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTC-C-----CCCHHHHHH
T ss_pred HHH----------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCC-C-----CCCHHHHHH
Confidence 321 12245667788999888888777733223 3455554444322 2231 1 112456778
Q ss_pred HHHHHhhccccccccc--ccCCcEEEEEecchHHHH
Q 003435 206 YFMELLQHSFFDNIVR--GIFGEVVMCKVHDYIHFL 239 (820)
Q Consensus 206 ~l~~L~~~~li~~~~~--~~~~~~~~~~~h~~v~~~ 239 (820)
++..|...+++..... +..++.+.++..--..++
T Consensus 338 ~l~~L~~~gli~~~~~~~g~~g~~~~~~l~~~~~~i 373 (387)
T 2v1u_A 338 IISELDMLGIVKSRVVSRGRYGKTREVSLDADRLAV 373 (387)
T ss_dssp HHHHHHHTTSEEEEEEECGGGCEEEEEEECSCHHHH
T ss_pred HHHHHHhCCCeEEEeecCCCCCceeEEEecCCHHHH
Confidence 8999999999976432 334444444444333333
No 171
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.83 E-value=0.0015 Score=56.27 Aligned_cols=53 Identities=25% Similarity=0.378 Sum_probs=38.2
Q ss_pred EEEeCCCCCc--ccCccccCcccccEEeccCccccccc-cccccCCcccEEeccCCCC
Q 003435 308 VLDLGQSGII--KLPDSIGTLKHLRYLDLSHTYIRKIP-GSISKLKHLQTLDLSNCYN 362 (820)
Q Consensus 308 ~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~~~~L~~L~~L~L~~n~~ 362 (820)
+++.++++++ .+|..+. ++|++|+|++|.|+.+| ..|..+++|++|+|++|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 6777777777 7776543 46788888888888775 5567777777777777654
No 172
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.76 E-value=0.00051 Score=63.40 Aligned_cols=107 Identities=16% Similarity=0.197 Sum_probs=65.3
Q ss_pred CCCCccEEEeecc-cccc-----cCccccCCceeEEEEeCCCCCcc-----cCccccCcccccEEeccCcccc-----cc
Q 003435 279 RARKLRTLLFLTV-KMEN-----LSFPCQEFQCLRVLDLGQSGIIK-----LPDSIGTLKHLRYLDLSHTYIR-----KI 342 (820)
Q Consensus 279 ~~~~L~~L~l~~n-~~~~-----l~~~~~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~i~-----~l 342 (820)
.-+.|+.|++++| .+.. +...+..-+.|+.|+|++|.+.. +.+.+..-+.|++|+|++|.|. .|
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3456777777664 4432 22234555678888888887762 3344556677888888888777 23
Q ss_pred ccccccCCcccEEeccCCCC--cc-----ccchhccCCCCCcEEecCCCC
Q 003435 343 PGSISKLKHLQTLDLSNCYN--LE-----ELPKGICQLTNLRTLDISSCY 385 (820)
Q Consensus 343 p~~~~~L~~L~~L~L~~n~~--~~-----~lp~~~~~l~~L~~L~L~~n~ 385 (820)
-..+..-+.|++|+|++|.. ++ .+...+..-+.|+.|+++.|.
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 34555566688888875422 22 233445566777777777653
No 173
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.52 E-value=0.011 Score=60.68 Aligned_cols=188 Identities=12% Similarity=0.010 Sum_probs=101.4
Q ss_pred ceEEEEEeCCCCCChhhHHHHHhhccCCC------------------CCcEEEEecCchHHHh-hh-C-CCCeEeCCCCC
Q 003435 12 RGFLIVLDDVWDEDGENMEKALSWLNVGG------------------SGSCVLVTTRSGRVAS-MM-G-TVPTQHLTCLS 70 (820)
Q Consensus 12 ~~~llvlDdv~~~~~~~~~~~~~~~~~~~------------------~gs~iiiTtr~~~~~~-~~-~-~~~~~~l~~l~ 70 (820)
+..+|+||++..-..+..+.+...+.... ++.++|.||....... .. . ....+++++++
T Consensus 90 ~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~ 169 (324)
T 1hqc_A 90 EGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYT 169 (324)
T ss_dssp TTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCC
T ss_pred CCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCC
Confidence 67799999997755444454443332210 2456776666433211 11 1 12479999999
Q ss_pred hHhHHHHHHHHhcCCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhccC------C---HHHHHHhhhcchhchhccC
Q 003435 71 SEDSWVLFKHFAFGSVEDESTELEEIGQKIVAKCKGLPIAIKTIGSILRSK------D---KEEWLSVADCDLWTLLEFK 141 (820)
Q Consensus 71 ~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~k------~---~~~w~~~~~~~~~~~~~~~ 141 (820)
.+|..+++...+........ .+....++++++|.|-.+.-+...+... . .+....+
T Consensus 170 ~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~------------ 234 (324)
T 1hqc_A 170 PEELAQGVMRDARLLGVRIT---EEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEA------------ 234 (324)
T ss_dssp HHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHH------------
T ss_pred HHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH------------
Confidence 99999999887643322222 3567889999999998777665444211 1 1122111
Q ss_pred cchhhHHHhhhcCCChhHHHHHhhhcCCCCCc-----------ccCHHHHH----HHHHHcCCcccCCCCCcHHHHHHHH
Q 003435 142 SHVLPVLKRSYDNLPWHLKQCFAYCSIFPKDY-----------WINKEKLV----RLWVAEGFIRLDSGSEDLEETADDY 206 (820)
Q Consensus 142 ~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~-----------~i~~~~li----~~w~~~gl~~~~~~~~~~~~~~~~~ 206 (820)
...+..++..++...+..+..+.....+. ++++..+. ++.+..|++........+.+.+.++
T Consensus 235 ---~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~~~~~~~~~~ 311 (324)
T 1hqc_A 235 ---LAALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVPTELAYRH 311 (324)
T ss_dssp ---HHHHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHHHH
T ss_pred ---HHHhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccceecHHHHHH
Confidence 12223344556666666665544332222 13333332 2355667765544445556666666
Q ss_pred HH-HHhhccccc
Q 003435 207 FM-ELLQHSFFD 217 (820)
Q Consensus 207 l~-~L~~~~li~ 217 (820)
+. ++.+++++|
T Consensus 312 ~~~~~~~~~~~~ 323 (324)
T 1hqc_A 312 LGYPPPVGPLLE 323 (324)
T ss_dssp TTCCCCC-----
T ss_pred HhcCCCCCCCCC
Confidence 65 666666665
No 174
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.42 E-value=0.042 Score=57.75 Aligned_cols=199 Identities=12% Similarity=0.040 Sum_probs=108.9
Q ss_pred HHHHHcC--CceEEEEEeCCCCCC----hhhHHHHHhhccC-CCCCcEEEEecCchHHHhhhC-------CCCeEeCCCC
Q 003435 4 KLEVYWR--GRGFLIVLDDVWDED----GENMEKALSWLNV-GGSGSCVLVTTRSGRVASMMG-------TVPTQHLTCL 69 (820)
Q Consensus 4 ~l~~~l~--~~~~llvlDdv~~~~----~~~~~~~~~~~~~-~~~gs~iiiTtr~~~~~~~~~-------~~~~~~l~~l 69 (820)
.+.+.++ +++.+||||+++.-. .+.+..+...+.. ...+..||+||++........ ....++++++
T Consensus 118 ~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l 197 (386)
T 2qby_A 118 RLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPY 197 (386)
T ss_dssp HHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCC
T ss_pred HHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCC
Confidence 3444443 458999999996521 2344445444422 234667788888654322211 1137999999
Q ss_pred ChHhHHHHHHHHhcCCCCCCChhHHHHHHHHHHHhc---CChH-HHHHHHHhhc-----cCC---HHHHHHhhhcchhch
Q 003435 70 SSEDSWVLFKHFAFGSVEDESTELEEIGQKIVAKCK---GLPI-AIKTIGSILR-----SKD---KEEWLSVADCDLWTL 137 (820)
Q Consensus 70 ~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~---glPl-al~~~~~~l~-----~k~---~~~w~~~~~~~~~~~ 137 (820)
+.++..+++...+..... ...--.++...+++.++ |.|- |+.++..+.. ++. .+.++.++...
T Consensus 198 ~~~~~~~il~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~---- 272 (386)
T 2qby_A 198 NAEELEDILTKRAQMAFK-PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI---- 272 (386)
T ss_dssp CHHHHHHHHHHHHHHHBC-SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH----
Confidence 999999999875421100 01112345667777777 9988 4443333321 111 34444433321
Q ss_pred hccCcchhhHHHhhhcCCChhHHHHHhhhcCCCC-C-cccCHHHHHHHHH----HcCCcccCCCCCcHHHHHHHHHHHHh
Q 003435 138 LEFKSHVLPVLKRSYDNLPWHLKQCFAYCSIFPK-D-YWINKEKLVRLWV----AEGFIRLDSGSEDLEETADDYFMELL 211 (820)
Q Consensus 138 ~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~-~-~~i~~~~li~~w~----~~gl~~~~~~~~~~~~~~~~~l~~L~ 211 (820)
....+.-++..++..++..+..++...+ + ..+...++.+.+. ..|. .+ ........++..|.
T Consensus 273 ------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~-~~-----~~~~~~~~~l~~L~ 340 (386)
T 2qby_A 273 ------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGV-EA-----VTQRRVSDIINELD 340 (386)
T ss_dssp ------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTC-CC-----CCHHHHHHHHHHHH
T ss_pred ------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCC-CC-----CCHHHHHHHHHHHH
Confidence 1235666778899988888888875332 2 2233444433221 1221 11 11345667889999
Q ss_pred hccccccc
Q 003435 212 QHSFFDNI 219 (820)
Q Consensus 212 ~~~li~~~ 219 (820)
..+++...
T Consensus 341 ~~gli~~~ 348 (386)
T 2qby_A 341 MVGILTAK 348 (386)
T ss_dssp HHTSEEEE
T ss_pred hCCCEEEE
Confidence 99999754
No 175
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.40 E-value=0.013 Score=56.03 Aligned_cols=104 Identities=6% Similarity=-0.134 Sum_probs=71.3
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchHHHh-h-hCCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGRVAS-M-MGTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~~~~-~-~~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
+++.+||+||++.-..+.++.+...+.....+.++|+||+...... . ...-..+++++++.++..+++...+......
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 6789999999987665666666666655567788999987753211 1 1112379999999999999998876322111
Q ss_pred CChhHHHHHHHHHHHhcCChHHHHHHHHh
Q 003435 89 ESTELEEIGQKIVAKCKGLPIAIKTIGSI 117 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glPlal~~~~~~ 117 (820)
.. .+..+.+++.++|.|..+..+...
T Consensus 181 ~~---~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 181 IT---EDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp BC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11 345678889999999865554433
No 176
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.24 E-value=0.095 Score=55.07 Aligned_cols=191 Identities=10% Similarity=0.041 Sum_probs=110.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCC----CCcEEEEecCchHHHhhhC-------CCCeEeCCCCChHhHHHHHH
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGG----SGSCVLVTTRSGRVASMMG-------TVPTQHLTCLSSEDSWVLFK 79 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~----~gs~iiiTtr~~~~~~~~~-------~~~~~~l~~l~~~~a~~Lf~ 79 (820)
+++.+||||+++.-+.+....+...+.... .+..||+||++........ ....+++++++.++..+++.
T Consensus 124 ~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~ 203 (389)
T 1fnn_A 124 DLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILL 203 (389)
T ss_dssp TCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHH
T ss_pred CCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHH
Confidence 568899999997765566666665553211 4677888888764433221 11369999999999999998
Q ss_pred HHhcC--CCCCCChhHHHHHHHHHHHh---------cCChHHHH-HHHHhhc-----cCC---HHHHHHhhhcchhchhc
Q 003435 80 HFAFG--SVEDESTELEEIGQKIVAKC---------KGLPIAIK-TIGSILR-----SKD---KEEWLSVADCDLWTLLE 139 (820)
Q Consensus 80 ~~~~~--~~~~~~~~~~~~~~~i~~~c---------~glPlal~-~~~~~l~-----~k~---~~~w~~~~~~~~~~~~~ 139 (820)
..+.. ..... -.+....+++.+ +|.|-.+. ++-.+.. +.. .+....+....
T Consensus 204 ~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~------ 274 (389)
T 1fnn_A 204 DRAKAGLAEGSY---SEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV------ 274 (389)
T ss_dssp HHHHHHBCTTSS---CHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH------
T ss_pred HHHHhhcCCCCC---CHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH------
Confidence 86532 11111 235677888888 78764433 3332221 222 22222222110
Q ss_pred cCcchhhHHHhhhcCCChhHHHHHhhhcCCC---CCcccCHHHHHHHHHH----cCCcccCCCCCcHHHHHHHHHHHHhh
Q 003435 140 FKSHVLPVLKRSYDNLPWHLKQCFAYCSIFP---KDYWINKEKLVRLWVA----EGFIRLDSGSEDLEETADDYFMELLQ 212 (820)
Q Consensus 140 ~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~---~~~~i~~~~li~~w~~----~gl~~~~~~~~~~~~~~~~~l~~L~~ 212 (820)
......-.++.|+...|.++..++.+. .+..+....+...+.. .|.... -......++..|..
T Consensus 275 ----~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~l~~L~~ 344 (389)
T 1fnn_A 275 ----LFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPR------VHSQLWSYLNDLRE 344 (389)
T ss_dssp ----SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCC------CHHHHHHHHHHHHH
T ss_pred ----hhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCC------CHHHHHHHHHHHHh
Confidence 011223345668888888887777654 2224566666554432 222111 13456788999999
Q ss_pred cccccccc
Q 003435 213 HSFFDNIV 220 (820)
Q Consensus 213 ~~li~~~~ 220 (820)
++++....
T Consensus 345 ~gli~~~~ 352 (389)
T 1fnn_A 345 KGIVETRQ 352 (389)
T ss_dssp TTSSEEEE
T ss_pred CCCeEEee
Confidence 99998654
No 177
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.08 E-value=0.0033 Score=58.02 Aligned_cols=86 Identities=14% Similarity=0.176 Sum_probs=65.7
Q ss_pred ccCCceeEEEEeCCC-CCc-----ccCccccCcccccEEeccCcccc-----ccccccccCCcccEEeccCCCCccc---
Q 003435 300 CQEFQCLRVLDLGQS-GII-----KLPDSIGTLKHLRYLDLSHTYIR-----KIPGSISKLKHLQTLDLSNCYNLEE--- 365 (820)
Q Consensus 300 ~~~l~~L~~L~L~~n-~l~-----~lp~~~~~l~~L~~L~Ls~n~i~-----~lp~~~~~L~~L~~L~L~~n~~~~~--- 365 (820)
+..-+.|+.|+|++| .|. .+-+.+..-+.|+.|+|++|.|. .|...+..-+.|++|+|++|.+...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345578999999985 776 24456777889999999999988 3456677778999999999887643
Q ss_pred -cchhccCCCCCcEEecCCCC
Q 003435 366 -LPKGICQLTNLRTLDISSCY 385 (820)
Q Consensus 366 -lp~~~~~l~~L~~L~L~~n~ 385 (820)
+.+.+..-+.|++|+|++|.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHHhhCCceeEEECCCCc
Confidence 33456667789999998753
No 178
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.98 E-value=0.0094 Score=51.22 Aligned_cols=55 Identities=16% Similarity=0.121 Sum_probs=45.2
Q ss_pred cEEeccCcccc--ccccccccCCcccEEeccCCCCccccchhccCCCCCcEEecCCCCC
Q 003435 330 RYLDLSHTYIR--KIPGSISKLKHLQTLDLSNCYNLEELPKGICQLTNLRTLDISSCYS 386 (820)
Q Consensus 330 ~~L~Ls~n~i~--~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~ 386 (820)
.+++.+++.++ ++|..+. ++|++|+|++|.+...-+..|..+++|+.|+|++|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 47899999998 8986543 4699999999887666566688999999999999964
No 179
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.58 E-value=0.034 Score=56.76 Aligned_cols=105 Identities=11% Similarity=0.039 Sum_probs=69.6
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchHH-Hhh-hCCCCeEeCCCCChHhHHHHHHHHhcCCCC
Q 003435 10 RGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGRV-ASM-MGTVPTQHLTCLSSEDSWVLFKHFAFGSVE 87 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~~-~~~-~~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~ 87 (820)
.+++.+||+||++.-..+.++.+...+.....++++|+||+...- ... ......+++++++.++..+++...+.....
T Consensus 105 ~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~ 184 (323)
T 1sxj_B 105 PGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDV 184 (323)
T ss_dssp TTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCC
Confidence 456899999999876555666666555444567888888876431 111 111238999999999999999886532111
Q ss_pred CCChhHHHHHHHHHHHhcCChH-HHHHHHHh
Q 003435 88 DESTELEEIGQKIVAKCKGLPI-AIKTIGSI 117 (820)
Q Consensus 88 ~~~~~~~~~~~~i~~~c~glPl-al~~~~~~ 117 (820)
.. -.+.+..+++.|+|.|- |+..+...
T Consensus 185 ~~---~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 185 KY---TNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp CB---CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 13457889999999994 55555433
No 180
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.98 E-value=0.25 Score=50.26 Aligned_cols=102 Identities=15% Similarity=-0.016 Sum_probs=71.6
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchH-----HHhhhCCCCeEeCCCCChHhHHHHHHHHhcCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGR-----VASMMGTVPTQHLTCLSSEDSWVLFKHFAFGS 85 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~-----~~~~~~~~~~~~l~~l~~~~a~~Lf~~~~~~~ 85 (820)
+++.+||+|+++.-..+.++.+...+.....++++|+||.... +...+ ..+++++++.++..+++...+...
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~---~~~~~~~l~~~~~~~~l~~~~~~~ 185 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC---AIFRFRPLRDEDIAKRLRYIAENE 185 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE---EEEECCCCCHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhC---cEEEecCCCHHHHHHHHHHHHHhc
Confidence 6788999999987666667777766655556788998887643 22222 279999999999999998876432
Q ss_pred CCCCChhHHHHHHHHHHHhcCChHHHHHHHHhh
Q 003435 86 VEDESTELEEIGQKIVAKCKGLPIAIKTIGSIL 118 (820)
Q Consensus 86 ~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l 118 (820)
... --.+....+++.++|-|-++..+....
T Consensus 186 ~~~---~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 186 GLE---LTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp TCE---ECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCC---CCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 211 123567888899999998665544333
No 181
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.69 E-value=0.77 Score=47.60 Aligned_cols=104 Identities=15% Similarity=0.102 Sum_probs=69.3
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchH-HHhh-hCCCCeEeCCCCChHhHHHHHHHHhcCCCC
Q 003435 10 RGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGR-VASM-MGTVPTQHLTCLSSEDSWVLFKHFAFGSVE 87 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~-~~~~-~~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~ 87 (820)
.+++.+||+||++.-..+.++.+...+.....+..+|++|.... +... ......+++++++.++..+++...+-....
T Consensus 117 ~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~ 196 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 196 (373)
T ss_dssp SSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 35678999999977666667777766655556777887776432 1111 111247999999999999999876522111
Q ss_pred CCChhHHHHHHHHHHHhcCChHHHHHHHH
Q 003435 88 DESTELEEIGQKIVAKCKGLPIAIKTIGS 116 (820)
Q Consensus 88 ~~~~~~~~~~~~i~~~c~glPlal~~~~~ 116 (820)
.. -.+.+..+++.++|.|..+..+..
T Consensus 197 ~~---~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 197 AH---EPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp CB---CHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHCCCCHHHHHHHHH
Confidence 11 134577899999999988766543
No 182
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=90.29 E-value=1.5 Score=44.12 Aligned_cols=102 Identities=6% Similarity=-0.109 Sum_probs=68.2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchH-HHhh-hCCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGR-VASM-MGTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~-~~~~-~~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
+++.+||+|+++.-..+..+.+...+.....+.++|+||.... +... ...-..+++++++.++..+.+...+......
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 6688999999977655556666666655556788888876643 1111 1112379999999999999998776432211
Q ss_pred CChhHHHHHHHHHHHhcCChHHHHHHH
Q 003435 89 ESTELEEIGQKIVAKCKGLPIAIKTIG 115 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glPlal~~~~ 115 (820)
. -.+....+++.++|-|-.+..+.
T Consensus 181 i---~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 181 I---TEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp B---CHHHHHHHHHTTTTCHHHHHHHH
T ss_pred C---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 23456788889999887654443
No 183
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=90.07 E-value=1.4 Score=46.78 Aligned_cols=124 Identities=12% Similarity=0.038 Sum_probs=71.5
Q ss_pred HHHcCCceEEEEEeCCCCCCh--hhHHHHHhhccC-CCCCcEEEEecCc---------hHHHhhhCCCCeEeCCCCChHh
Q 003435 6 EVYWRGRGFLIVLDDVWDEDG--ENMEKALSWLNV-GGSGSCVLVTTRS---------GRVASMMGTVPTQHLTCLSSED 73 (820)
Q Consensus 6 ~~~l~~~~~llvlDdv~~~~~--~~~~~~~~~~~~-~~~gs~iiiTtr~---------~~~~~~~~~~~~~~l~~l~~~~ 73 (820)
.+.++.+.-+|+|||++.-.. ..-+.+...+.. ...|..||+||.. +.+...+.....+++++++.++
T Consensus 188 ~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~ 267 (440)
T 2z4s_A 188 REKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEET 267 (440)
T ss_dssp HHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHH
T ss_pred HHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHH
Confidence 334444677999999965321 122233333211 1357789988875 3344445444579999999999
Q ss_pred HHHHHHHHhcCCCCCCChhHHHHHHHHHHHhcCChHHHHHHHH------hhccCC--HHHHHHhhhc
Q 003435 74 SWVLFKHFAFGSVEDESTELEEIGQKIVAKCKGLPIAIKTIGS------ILRSKD--KEEWLSVADC 132 (820)
Q Consensus 74 a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~------~l~~k~--~~~w~~~~~~ 132 (820)
-.+++...+....-...+ ++...+++.+.|-+-.+.-+-. ...++. .+.++.++..
T Consensus 268 r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~ 331 (440)
T 2z4s_A 268 RKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKD 331 (440)
T ss_dssp HHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTST
T ss_pred HHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 999998876321111122 3366778888887754432211 123333 5666666654
No 184
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=88.43 E-value=0.56 Score=44.99 Aligned_cols=101 Identities=16% Similarity=0.086 Sum_probs=59.2
Q ss_pred ceEEEEEeCCCCCChhh--HHHHHhhccC--CCCCcEEEEecCc---------hHHHhhhCCCCeEeCCCCChHhHHHHH
Q 003435 12 RGFLIVLDDVWDEDGEN--MEKALSWLNV--GGSGSCVLVTTRS---------GRVASMMGTVPTQHLTCLSSEDSWVLF 78 (820)
Q Consensus 12 ~~~llvlDdv~~~~~~~--~~~~~~~~~~--~~~gs~iiiTtr~---------~~~~~~~~~~~~~~l~~l~~~~a~~Lf 78 (820)
+..+||+||++...... .+.+...+.. .....+||+||+. +.+...+.....+++++++.++..+++
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l 183 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAAL 183 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHH
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHH
Confidence 45789999997633222 2223332211 1122257777763 233333322247999999999999999
Q ss_pred HHHhcCCCCCCChhHHHHHHHHHHHhcCChHHHHHHH
Q 003435 79 KHFAFGSVEDESTELEEIGQKIVAKCKGLPIAIKTIG 115 (820)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~ 115 (820)
...+....... -.+....+++.++|-+-.+..+-
T Consensus 184 ~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 184 QRRAAMRGLQL---PEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHTTCCC---CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHcCCCC---CHHHHHHHHHHccCCHHHHHHHH
Confidence 88763221111 23557788889999876665443
No 185
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=84.80 E-value=3.5 Score=41.76 Aligned_cols=96 Identities=11% Similarity=0.056 Sum_probs=65.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchH-HHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGR-VASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVED 88 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~-~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~ 88 (820)
+++-++|+|+++.-..+..+.+...+.....++.+|++|.+.+ +.... ..-..++++++++++..+.+.... .
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~--~--- 181 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV--T--- 181 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC--C---
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc--C---
Confidence 5678899999987666666777777755556777777776643 22211 112379999999999999888765 1
Q ss_pred CChhHHHHHHHHHHHhcCChHHHHHH
Q 003435 89 ESTELEEIGQKIVAKCKGLPIAIKTI 114 (820)
Q Consensus 89 ~~~~~~~~~~~i~~~c~glPlal~~~ 114 (820)
.. .+.+..+++.++|-|..+..+
T Consensus 182 ~~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 182 MS---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp CC---HHHHHHHHHHTTTCHHHHHHT
T ss_pred CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 11 244577889999999765443
No 186
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.56 E-value=3.1 Score=42.62 Aligned_cols=102 Identities=6% Similarity=-0.023 Sum_probs=64.8
Q ss_pred ceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchH-HHhhh-CCCCeEeCCCCChHhHHHHHHHHhcCCCCCC
Q 003435 12 RGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGR-VASMM-GTVPTQHLTCLSSEDSWVLFKHFAFGSVEDE 89 (820)
Q Consensus 12 ~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~-~~~~~-~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~~ 89 (820)
+.-++|||++..-+.+..+.+...+.....+.++|+||.+.. +.... ..-..+++++++.++..+.+...+.......
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQL 213 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEE
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCC
Confidence 556999999977655556666665544445778888776522 21111 1114799999999999999987663211111
Q ss_pred ChhHHHHHHHHHHHhcCChHHHHHHH
Q 003435 90 STELEEIGQKIVAKCKGLPIAIKTIG 115 (820)
Q Consensus 90 ~~~~~~~~~~i~~~c~glPlal~~~~ 115 (820)
. -.+.+..+++.++|-+-.+..+.
T Consensus 214 ~--~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 214 E--TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp C--CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred C--cHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 02456788899999876554443
No 187
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.43 E-value=10 Score=38.56 Aligned_cols=99 Identities=9% Similarity=-0.019 Sum_probs=65.3
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchH-----HHhhhCCCCeEeCCCCChHhHHHHHHHHhcCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGR-----VASMMGTVPTQHLTCLSSEDSWVLFKHFAFGS 85 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~-----~~~~~~~~~~~~l~~l~~~~a~~Lf~~~~~~~ 85 (820)
.++-+|++|++..-.......+...+.......++|++|.... +...+ ..+++++++.++..+.+...+...
T Consensus 132 ~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~~l~~~~~~~ 208 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC---SKFRFKALDASNAIDRLRFISEQE 208 (353)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS---EEEECCCCCHHHHHHHHHHHHHTT
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC---ceEEeCCCCHHHHHHHHHHHHHHh
Confidence 3556999999976555555666655544445677777775432 22222 278999999999999998866432
Q ss_pred CCCCChhHHHHHHHHHHHhcCChHHHHHHH
Q 003435 86 VEDESTELEEIGQKIVAKCKGLPIAIKTIG 115 (820)
Q Consensus 86 ~~~~~~~~~~~~~~i~~~c~glPlal~~~~ 115 (820)
..... .+....+++.++|-|-.+..+.
T Consensus 209 ~~~i~---~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 209 NVKCD---DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp TCCCC---HHHHHHHHHHTSSCHHHHHHHH
T ss_pred CCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 11112 3567889999999987654443
No 188
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=77.25 E-value=13 Score=36.14 Aligned_cols=113 Identities=16% Similarity=0.143 Sum_probs=60.7
Q ss_pred CCceEEEEEeCCCCC----------ChhhHHHHHhhccC---CCCCcEEEEecCchHHHhhh---CC-CCeEeCCCCCh-
Q 003435 10 RGRGFLIVLDDVWDE----------DGENMEKALSWLNV---GGSGSCVLVTTRSGRVASMM---GT-VPTQHLTCLSS- 71 (820)
Q Consensus 10 ~~~~~llvlDdv~~~----------~~~~~~~~~~~~~~---~~~gs~iiiTtr~~~~~~~~---~~-~~~~~l~~l~~- 71 (820)
+.+..+|+||+++.- ...-.+.+...+.. .+....||.||......... .. ...++++++++
T Consensus 122 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r 201 (272)
T 1d2n_A 122 KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATG 201 (272)
T ss_dssp TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEH
T ss_pred hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHH
Confidence 467899999998431 11122333333322 23345577788776554431 11 23689999988
Q ss_pred HhHHHHHHHHhcCCCCCCChhHHHHHHHHHHHhcC------ChHHHHHHHHhhccCCHHHHHHhh
Q 003435 72 EDSWVLFKHFAFGSVEDESTELEEIGQKIVAKCKG------LPIAIKTIGSILRSKDKEEWLSVA 130 (820)
Q Consensus 72 ~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g------lPlal~~~~~~l~~k~~~~w~~~~ 130 (820)
++-.+++.... . .. .+....+++.+.| .+-++.++-.+-.......|..++
T Consensus 202 ~~i~~i~~~~~----~-~~---~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~ 258 (272)
T 1d2n_A 202 EQLLEALELLG----N-FK---DKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFL 258 (272)
T ss_dssp HHHHHHHHHHT----C-SC---HHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHH
T ss_pred HHHHHHHHhcC----C-CC---HHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHH
Confidence 55555555431 1 11 2346677778777 555555555444333334444433
No 189
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.65 E-value=5.8 Score=43.01 Aligned_cols=102 Identities=9% Similarity=0.165 Sum_probs=60.0
Q ss_pred CceEEEEEeCCCCCC---hhhHHHHHhhccCCCCCcEEEEecCchH---HHhhhCCCCeEeCCCCChHhHHHHHHHHhcC
Q 003435 11 GRGFLIVLDDVWDED---GENMEKALSWLNVGGSGSCVLVTTRSGR---VASMMGTVPTQHLTCLSSEDSWVLFKHFAFG 84 (820)
Q Consensus 11 ~~~~llvlDdv~~~~---~~~~~~~~~~~~~~~~gs~iiiTtr~~~---~~~~~~~~~~~~l~~l~~~~a~~Lf~~~~~~ 84 (820)
+++.+||+|+++.-. .+.+..+...... .+..||+++.+.. +.........+++++++.++..+.+...+..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~ 224 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR 224 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 577899999996532 2334555444432 2344666555422 2111112237999999999999988776543
Q ss_pred CCCCCChhHHHHHHHHHHHhcC-ChHHHHHHHHh
Q 003435 85 SVEDESTELEEIGQKIVAKCKG-LPIAIKTIGSI 117 (820)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~~c~g-lPlal~~~~~~ 117 (820)
......+ +....+++.++| ++-|+.++...
T Consensus 225 ~~~~i~~---~~l~~la~~s~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 225 EKFKLDP---NVIDRLIQTTRGDIRQVINLLSTI 255 (516)
T ss_dssp HTCCCCT---THHHHHHHHTTTCHHHHHHHHTHH
T ss_pred cCCCCCH---HHHHHHHHHcCCcHHHHHHHHHHH
Confidence 2111122 346778888998 56666665433
No 190
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=72.26 E-value=29 Score=34.85 Aligned_cols=99 Identities=10% Similarity=0.068 Sum_probs=61.3
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCC------------------CCcEEEEecCchH-----HHhhhCCCCeEeCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGG------------------SGSCVLVTTRSGR-----VASMMGTVPTQHLT 67 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~------------------~gs~iiiTtr~~~-----~~~~~~~~~~~~l~ 67 (820)
.+..+|+||++.....+....+...+.... ++.++|.+|.... +...+ ...++++
T Consensus 105 ~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~--~~~i~l~ 182 (338)
T 3pfi_A 105 SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRF--GMQFRLE 182 (338)
T ss_dssp CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTC--SEEEECC
T ss_pred cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhc--CEEeeCC
Confidence 456899999998765554555554443221 1246666665422 22222 2479999
Q ss_pred CCChHhHHHHHHHHhcCCCCCCChhHHHHHHHHHHHhcCChHHHHHH
Q 003435 68 CLSSEDSWVLFKHFAFGSVEDESTELEEIGQKIVAKCKGLPIAIKTI 114 (820)
Q Consensus 68 ~l~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~ 114 (820)
+++.++..+++...+..... .--.+....+++.+.|.|-.+..+
T Consensus 183 ~~~~~e~~~il~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 183 FYKDSELALILQKAALKLNK---TCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp CCCHHHHHHHHHHHHHHTTC---EECHHHHHHHHHTTTTCHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHCcCHHHHHHH
Confidence 99999999999877633221 112355777888899998544433
No 191
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=68.71 E-value=12 Score=36.67 Aligned_cols=99 Identities=10% Similarity=0.055 Sum_probs=54.7
Q ss_pred CCceEEEEEeCCCCC-----------Ch---hhHHHHHhhcc--CCCCCcEEEEecCchHHHh-----hhCCCCeEeCCC
Q 003435 10 RGRGFLIVLDDVWDE-----------DG---ENMEKALSWLN--VGGSGSCVLVTTRSGRVAS-----MMGTVPTQHLTC 68 (820)
Q Consensus 10 ~~~~~llvlDdv~~~-----------~~---~~~~~~~~~~~--~~~~gs~iiiTtr~~~~~~-----~~~~~~~~~l~~ 68 (820)
..+..+|+||+++.- .. ..+..+..... ....+..||.||....... .......++++.
T Consensus 108 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~ 187 (285)
T 3h4m_A 108 EKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPA 187 (285)
T ss_dssp HTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCC
T ss_pred HcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECC
Confidence 345689999999531 11 11222222221 1234677888887543222 111123799999
Q ss_pred CChHhHHHHHHHHhcCCCCCCChhHHHHHHHHHHHhcC-ChHHHH
Q 003435 69 LSSEDSWVLFKHFAFGSVEDESTELEEIGQKIVAKCKG-LPIAIK 112 (820)
Q Consensus 69 l~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlal~ 112 (820)
.+.++..+++...+.......... ...+++.+.| .|-.+.
T Consensus 188 p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 188 PDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp CCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHH
Confidence 999999999988764432222222 3455666666 343333
No 192
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=63.40 E-value=26 Score=35.35 Aligned_cols=101 Identities=8% Similarity=-0.109 Sum_probs=65.0
Q ss_pred CCceEEEEEeCCCC-CChhhHHHHHhhccCCCCCcEEEEecCc-------hHHHhhhC-CCCeEeCCCCChHhHHHHHHH
Q 003435 10 RGRGFLIVLDDVWD-EDGENMEKALSWLNVGGSGSCVLVTTRS-------GRVASMMG-TVPTQHLTCLSSEDSWVLFKH 80 (820)
Q Consensus 10 ~~~~~llvlDdv~~-~~~~~~~~~~~~~~~~~~gs~iiiTtr~-------~~~~~~~~-~~~~~~l~~l~~~~a~~Lf~~ 80 (820)
-+++=++|+|++.. -..+.++.+...+....+++.+|++|.. +.+..... ....++..+++.++..+...+
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHH
Confidence 35566788899865 3446677777777554567887766643 24444322 223789999999888887777
Q ss_pred HhcCCCCCCChhHHHHHHHHHHHhcCChHHHHH
Q 003435 81 FAFGSVEDESTELEEIGQKIVAKCKGLPIAIKT 113 (820)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~ 113 (820)
.+-.... .--.+.+..+++.++|-+.++..
T Consensus 154 ~~~~~g~---~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 154 RAKQLNL---ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHTTC---EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHcCC---CCCHHHHHHHHHHhchHHHHHHH
Confidence 6522211 11235678888889988776654
No 193
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=62.06 E-value=17 Score=36.02 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=48.1
Q ss_pred ceEEEEEeCCCCC---------ChhhHHHHHhhccCCCCCcEEEEecCchH----------HHhhhCCCCeEeCCCCChH
Q 003435 12 RGFLIVLDDVWDE---------DGENMEKALSWLNVGGSGSCVLVTTRSGR----------VASMMGTVPTQHLTCLSSE 72 (820)
Q Consensus 12 ~~~llvlDdv~~~---------~~~~~~~~~~~~~~~~~gs~iiiTtr~~~----------~~~~~~~~~~~~l~~l~~~ 72 (820)
+..+|+||+++.- ..+....+...+.....+..||+||.... +.+.++ ..+++++++.+
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~ 207 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIA--HHIEFPDYSDE 207 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEE--EEEEECCCCHH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCC--eEEEcCCcCHH
Confidence 3469999999732 44555666666655556778888886532 222222 47999999999
Q ss_pred hHHHHHHHHhc
Q 003435 73 DSWVLFKHFAF 83 (820)
Q Consensus 73 ~a~~Lf~~~~~ 83 (820)
+-.+++...+.
T Consensus 208 ~~~~il~~~l~ 218 (309)
T 3syl_A 208 ELFEIAGHMLD 218 (309)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999977663
No 194
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=60.46 E-value=23 Score=35.30 Aligned_cols=91 Identities=12% Similarity=0.033 Sum_probs=53.1
Q ss_pred eEEEEEeCCCCCCh--hhHHHHHhhccC-CCCCcEEEEecCc---------hHHHhhhCCCCeEeCCCCChHhHHHHHHH
Q 003435 13 GFLIVLDDVWDEDG--ENMEKALSWLNV-GGSGSCVLVTTRS---------GRVASMMGTVPTQHLTCLSSEDSWVLFKH 80 (820)
Q Consensus 13 ~~llvlDdv~~~~~--~~~~~~~~~~~~-~~~gs~iiiTtr~---------~~~~~~~~~~~~~~l~~l~~~~a~~Lf~~ 80 (820)
..+|++||+..-.. ...+.+...+.. ...|.+||+||.. +.+...+.....+++++ +.++..+++..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 57999999965321 122233333211 1246678888753 33444444445799999 99999999988
Q ss_pred HhcCCCCCCChhHHHHHHHHHHHhcCCh
Q 003435 81 FAFGSVEDESTELEEIGQKIVAKCKGLP 108 (820)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~~c~glP 108 (820)
.+........ .+....+++++ |-.
T Consensus 178 ~~~~~~~~l~---~~~l~~l~~~~-g~~ 201 (324)
T 1l8q_A 178 KLKEFNLELR---KEVIDYLLENT-KNV 201 (324)
T ss_dssp HHHHTTCCCC---HHHHHHHHHHC-SSH
T ss_pred HHHhcCCCCC---HHHHHHHHHhC-CCH
Confidence 7642211222 34466677777 544
No 195
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=56.07 E-value=51 Score=33.44 Aligned_cols=92 Identities=11% Similarity=-0.064 Sum_probs=57.8
Q ss_pred EEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCc-----------------hHHHhhhCCCCeEeCCCCChHhHHH
Q 003435 14 FLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRS-----------------GRVASMMGTVPTQHLTCLSSEDSWV 76 (820)
Q Consensus 14 ~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~-----------------~~~~~~~~~~~~~~l~~l~~~~a~~ 76 (820)
.+|+||++..-..+....+...+...... .|+++|.. +.+.+.+ ..+++++++.++..+
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~~ 266 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTKQ 266 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHHH
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHHH
Confidence 59999999776666666666666443333 34444431 2343433 258999999999999
Q ss_pred HHHHHhcCCCCCCChhHHHHHHHHHHHhc-CChHHHH
Q 003435 77 LFKHFAFGSVEDESTELEEIGQKIVAKCK-GLPIAIK 112 (820)
Q Consensus 77 Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~-glPlal~ 112 (820)
++...+....... -.+....+++.+. |-|-.+.
T Consensus 267 il~~~~~~~~~~~---~~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 267 ILRIRCEEEDVEM---SEDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp HHHHHHHHTTCCB---CHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHcCCCC---CHHHHHHHHHHhcCCCHHHHH
Confidence 9987764322111 2345778888887 7665443
No 196
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=55.48 E-value=98 Score=31.22 Aligned_cols=100 Identities=15% Similarity=0.034 Sum_probs=56.8
Q ss_pred CceEEEEEeCCCCCChh-----------hHHHHHhhcc---CCCCCcEEEEecCch-----HHHhhhCCCCeEeCCCCCh
Q 003435 11 GRGFLIVLDDVWDEDGE-----------NMEKALSWLN---VGGSGSCVLVTTRSG-----RVASMMGTVPTQHLTCLSS 71 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~-----------~~~~~~~~~~---~~~~gs~iiiTtr~~-----~~~~~~~~~~~~~l~~l~~ 71 (820)
.+..+|+||+++.-... ....+...+. ....+..||.||... .+.+. ....+.++..+.
T Consensus 142 ~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rR--f~~~i~i~~P~~ 219 (355)
T 2qp9_X 142 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRR--FERRIYIPLPDL 219 (355)
T ss_dssp TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHT--CCEEEECCCCCH
T ss_pred cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcc--cCEEEEeCCcCH
Confidence 46789999999652210 1222332222 123456666677643 23332 234788999999
Q ss_pred HhHHHHHHHHhcCCCCCCChhHHHHHHHHHHHhcC-ChHHHHHHH
Q 003435 72 EDSWVLFKHFAFGSVEDESTELEEIGQKIVAKCKG-LPIAIKTIG 115 (820)
Q Consensus 72 ~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlal~~~~ 115 (820)
++-.+++............ ......+++.+.| .+-.|..+.
T Consensus 220 ~~r~~il~~~l~~~~~~~~---~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 220 AARTTMFEINVGDTPSVLT---KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp HHHHHHHHHHHTTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999887643321111 2345677888888 454455443
No 197
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=54.19 E-value=34 Score=34.05 Aligned_cols=102 Identities=16% Similarity=0.112 Sum_probs=57.6
Q ss_pred CceEEEEEeCCCCCC-hhhHHHHHhhccCCCCCcEEEEecCchH-----HHhhhCCCCeEeCCCCChHhHHHHH------
Q 003435 11 GRGFLIVLDDVWDED-GENMEKALSWLNVGGSGSCVLVTTRSGR-----VASMMGTVPTQHLTCLSSEDSWVLF------ 78 (820)
Q Consensus 11 ~~~~llvlDdv~~~~-~~~~~~~~~~~~~~~~gs~iiiTtr~~~-----~~~~~~~~~~~~l~~l~~~~a~~Lf------ 78 (820)
+++.+||+|++..-. .+..+.+...+.....+.+||+||.... +...+ ..+++++++.++-.+++
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~~~~ 180 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC---RVITFGQPTDEDKIEMMKQMIRR 180 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS---EEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC---cEEEeCCCCHHHHHHHHHHHHHH
Confidence 378899999997654 4445555554433335678888887643 22322 37999999988743332
Q ss_pred -HHHhcCCCCCCChhHHHHHHHHHHHhcCChH-HHHHHHHh
Q 003435 79 -KHFAFGSVEDESTELEEIGQKIVAKCKGLPI-AIKTIGSI 117 (820)
Q Consensus 79 -~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-al~~~~~~ 117 (820)
...+........+ .+....+++.++|-+- |+..+-.+
T Consensus 181 l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~~~L~~~ 219 (324)
T 3u61_B 181 LTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTIGELDSY 219 (324)
T ss_dssp HHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHHHHHHHH
T ss_pred HHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 2222111111111 2556778888877554 44444333
No 198
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=54.11 E-value=59 Score=30.86 Aligned_cols=97 Identities=8% Similarity=0.060 Sum_probs=53.3
Q ss_pred CceEEEEEeCCCCCC---------------hhhHHHHHhhccC--CCCCcEEEEecCchHHHhh-h----CCCCeEeCCC
Q 003435 11 GRGFLIVLDDVWDED---------------GENMEKALSWLNV--GGSGSCVLVTTRSGRVASM-M----GTVPTQHLTC 68 (820)
Q Consensus 11 ~~~~llvlDdv~~~~---------------~~~~~~~~~~~~~--~~~gs~iiiTtr~~~~~~~-~----~~~~~~~l~~ 68 (820)
....+|+||+++.-. ......+...+.. ...+..||.||........ . .-...++++.
T Consensus 97 ~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~ 176 (262)
T 2qz4_A 97 RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDL 176 (262)
T ss_dssp TCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCS
T ss_pred cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCC
Confidence 457899999996521 1112233333322 1245667777765442221 1 1124788999
Q ss_pred CChHhHHHHHHHHhcCCCCCCChhHHHHHHHHHHHhcCChH
Q 003435 69 LSSEDSWVLFKHFAFGSVEDESTELEEIGQKIVAKCKGLPI 109 (820)
Q Consensus 69 l~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 109 (820)
.+.++-.+++...+...... .........+++.+.|.+-
T Consensus 177 p~~~~r~~il~~~~~~~~~~--~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 177 PTLQERREIFEQHLKSLKLT--QSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp CCHHHHHHHHHHHHHHTTCC--BTHHHHHHHHHHTCTTCCH
T ss_pred cCHHHHHHHHHHHHHhCCCC--cchhhHHHHHHHHCCCCCH
Confidence 99999999998765332211 1222234677788887654
No 199
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=52.24 E-value=1.2e+02 Score=29.84 Aligned_cols=100 Identities=15% Similarity=0.035 Sum_probs=58.1
Q ss_pred CceEEEEEeCCCCCCh-----------hhHHHHHhhcc---CCCCCcEEEEecCchH-----HHhhhCCCCeEeCCCCCh
Q 003435 11 GRGFLIVLDDVWDEDG-----------ENMEKALSWLN---VGGSGSCVLVTTRSGR-----VASMMGTVPTQHLTCLSS 71 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~-----------~~~~~~~~~~~---~~~~gs~iiiTtr~~~-----~~~~~~~~~~~~l~~l~~ 71 (820)
.+..+|+||+++.-.. .....+...+. ....+..||.||.... +.+.+ ...+.++..+.
T Consensus 109 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf--~~~i~~~~p~~ 186 (322)
T 3eie_A 109 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRF--ERRIYIPLPDL 186 (322)
T ss_dssp TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHC--CEEEECCCCCH
T ss_pred cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHccc--CeEEEeCCCCH
Confidence 4568999999964211 11233332222 2345666776776533 23322 24788999999
Q ss_pred HhHHHHHHHHhcCCCCCCChhHHHHHHHHHHHhcC-ChHHHHHHH
Q 003435 72 EDSWVLFKHFAFGSVEDESTELEEIGQKIVAKCKG-LPIAIKTIG 115 (820)
Q Consensus 72 ~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlal~~~~ 115 (820)
++-.+++...+.+...... ......+++.+.| .+-.|..+.
T Consensus 187 ~~r~~il~~~~~~~~~~~~---~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 187 AARTTMFEINVGDTPCVLT---KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp HHHHHHHHHHHTTCCCCCC---HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999887754322111 2345677788877 454555444
No 200
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=49.92 E-value=58 Score=32.65 Aligned_cols=95 Identities=9% Similarity=-0.046 Sum_probs=60.0
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchH-----HHhhhCCCCeEeCCCCChHhHHHHHHHHhcCC
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGR-----VASMMGTVPTQHLTCLSSEDSWVLFKHFAFGS 85 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~-----~~~~~~~~~~~~l~~l~~~~a~~Lf~~~~~~~ 85 (820)
+.+-++|+|++..-..+..+.+...+.......++|++|.... +...+ ..+++.+++.++..+.+...+-..
T Consensus 109 ~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~---~~~~~~~l~~~~~~~~l~~~~~~~ 185 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQC---TRFRFQPLPQEAIERRIANVLVHE 185 (340)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS---EEEECCCCCHHHHHHHHHHHHHTT
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhc---eeEeccCCCHHHHHHHHHHHHHHc
Confidence 3467899999976555555666555544445677777775432 22221 268999999999888887665221
Q ss_pred CCCCChhHHHHHHHHHHHhcCChHHH
Q 003435 86 VEDESTELEEIGQKIVAKCKGLPIAI 111 (820)
Q Consensus 86 ~~~~~~~~~~~~~~i~~~c~glPlal 111 (820)
.-.. -.+.++.+++.++|-+--+
T Consensus 186 ~~~i---~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 186 KLKL---SPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp TCCB---CHHHHHHHHHHHTTCHHHH
T ss_pred CCCC---CHHHHHHHHHHcCCCHHHH
Confidence 1111 1345778888899987643
No 201
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=48.89 E-value=1.2e+02 Score=29.85 Aligned_cols=72 Identities=8% Similarity=0.044 Sum_probs=40.6
Q ss_pred CCceEEEEEeCCCCCC-hhhHHHHHhhccCCCCCcEEEEecCchH---------HHhhhCCCCeEeCCCCChHhHHHHHH
Q 003435 10 RGRGFLIVLDDVWDED-GENMEKALSWLNVGGSGSCVLVTTRSGR---------VASMMGTVPTQHLTCLSSEDSWVLFK 79 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~-~~~~~~~~~~~~~~~~gs~iiiTtr~~~---------~~~~~~~~~~~~l~~l~~~~a~~Lf~ 79 (820)
+++.++||||+++.-. ++..-.+..|.........||.++...+ +...++. ..+++++++.+|-.+++.
T Consensus 130 ~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~-~~i~F~pYt~~el~~Il~ 208 (318)
T 3te6_A 130 KKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHF-TEIKLNKVDKNELQQMII 208 (318)
T ss_dssp GSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTE-EEEECCCCCHHHHHHHHH
T ss_pred cCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCCc-eEEEeCCCCHHHHHHHHH
Confidence 4568999999996632 2333333332211111223444443321 1223322 369999999999999998
Q ss_pred HHh
Q 003435 80 HFA 82 (820)
Q Consensus 80 ~~~ 82 (820)
+++
T Consensus 209 ~Rl 211 (318)
T 3te6_A 209 TRL 211 (318)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 202
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=47.50 E-value=14 Score=33.65 Aligned_cols=51 Identities=24% Similarity=0.223 Sum_probs=31.3
Q ss_pred HHHHHHHcCCc-eEEEEEeCCCCC---ChhhHHHHHhhccCCCCCcEEEEecCch
Q 003435 2 WWKLEVYWRGR-GFLIVLDDVWDE---DGENMEKALSWLNVGGSGSCVLVTTRSG 52 (820)
Q Consensus 2 ~~~l~~~l~~~-~~llvlDdv~~~---~~~~~~~~~~~~~~~~~gs~iiiTtr~~ 52 (820)
|+..++.+... -=|||||++-.. ..-..+.+..++...-...-||+|+|..
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 45667777544 459999998220 1123344555554434566799999994
No 203
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=47.08 E-value=52 Score=25.98 Aligned_cols=38 Identities=8% Similarity=0.110 Sum_probs=18.3
Q ss_pred ccCCCCcccEEEecCCCCCCccccccCCCCCccEEEecc
Q 003435 703 SLEKFCSLQKLDIVECPRLVHIPDIMGQHSSLLELSIEG 741 (820)
Q Consensus 703 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 741 (820)
+|.+|++|+.+.+-.+ +...-...|.++.+|+.+.+.+
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 4445555555555443 3333334455555555555544
No 204
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.72 E-value=20 Score=28.38 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=16.5
Q ss_pred cccCcccccEEeccCcccccc-ccccccCCcccEEeccC
Q 003435 322 SIGTLKHLRYLDLSHTYIRKI-PGSISKLKHLQTLDLSN 359 (820)
Q Consensus 322 ~~~~l~~L~~L~Ls~n~i~~l-p~~~~~L~~L~~L~L~~ 359 (820)
+|.++..|+.+.|-.+ ++.| ..+|.+|.+|+.+.+.+
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3444555555444432 3344 23444444444444443
No 205
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=42.49 E-value=22 Score=35.18 Aligned_cols=71 Identities=10% Similarity=0.001 Sum_probs=51.8
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCch-HHHhhhCCCCeEeCCCCChHhHHHHHHHHh
Q 003435 11 GRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSG-RVASMMGTVPTQHLTCLSSEDSWVLFKHFA 82 (820)
Q Consensus 11 ~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~-~~~~~~~~~~~~~l~~l~~~~a~~Lf~~~~ 82 (820)
+++-++|+|++..-..+..+.+...+-...+.+.+|++|.+. .+....... .++++++++++..+.+.+.+
T Consensus 81 ~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 456789999998766677777777776555677877776543 333333333 89999999999999998765
No 206
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=33.34 E-value=25 Score=31.38 Aligned_cols=67 Identities=9% Similarity=0.024 Sum_probs=36.6
Q ss_pred CCceEEEEEeCCCCCC--------hhhHHHHHhhccCCCCCcEEEEecCchHHHhh-------hCCCCeEeCCCCChHhH
Q 003435 10 RGRGFLIVLDDVWDED--------GENMEKALSWLNVGGSGSCVLVTTRSGRVASM-------MGTVPTQHLTCLSSEDS 74 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~--------~~~~~~~~~~~~~~~~gs~iiiTtr~~~~~~~-------~~~~~~~~l~~l~~~~a 74 (820)
.++..+|||||++.-. .+....+.... .. .+..+|+||........ ...-..+++++++.++.
T Consensus 113 ~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~-~~-~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~ 190 (195)
T 1jbk_A 113 QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL-AR-GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDT 190 (195)
T ss_dssp STTTEEEEEETGGGGTT------CCCCHHHHHHHH-HT-TSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHH
T ss_pred cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhh-cc-CCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHH
Confidence 3567899999996531 11122333222 22 34557777765442211 11112688999988887
Q ss_pred HHHH
Q 003435 75 WVLF 78 (820)
Q Consensus 75 ~~Lf 78 (820)
.+++
T Consensus 191 ~~il 194 (195)
T 1jbk_A 191 IAIL 194 (195)
T ss_dssp HTTC
T ss_pred HHHh
Confidence 6653
No 207
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=33.13 E-value=2e+02 Score=28.93 Aligned_cols=101 Identities=12% Similarity=0.000 Sum_probs=56.9
Q ss_pred CceEEEEEeCCCCCC-----------hhhHHHHHhhccC----CCCCcEEEEecCchH-----HHhhhCCCCeEeCCCCC
Q 003435 11 GRGFLIVLDDVWDED-----------GENMEKALSWLNV----GGSGSCVLVTTRSGR-----VASMMGTVPTQHLTCLS 70 (820)
Q Consensus 11 ~~~~llvlDdv~~~~-----------~~~~~~~~~~~~~----~~~gs~iiiTtr~~~-----~~~~~~~~~~~~l~~l~ 70 (820)
.+..+|+||+++.-. ......+...+.. ...+..||.||.... +.+.+ ...+.++..+
T Consensus 175 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf--~~~i~i~~p~ 252 (357)
T 3d8b_A 175 QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRL--VKRLYIPLPE 252 (357)
T ss_dssp TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTC--CEEEECCCCC
T ss_pred cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhC--ceEEEeCCcC
Confidence 557899999994210 0112233333321 123455666665432 22222 2378899999
Q ss_pred hHhHHHHHHHHhcCCCCCCChhHHHHHHHHHHHhcC-ChHHHHHHHH
Q 003435 71 SEDSWVLFKHFAFGSVEDESTELEEIGQKIVAKCKG-LPIAIKTIGS 116 (820)
Q Consensus 71 ~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlal~~~~~ 116 (820)
.++..+++...+-....... .+....+++.+.| .+-++..+..
T Consensus 253 ~~~r~~il~~~~~~~~~~l~---~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 253 ASARKQIVINLMSKEQCCLS---EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHHHHHHHHHHHTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCcc---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999998776633211111 2456778888888 5556665543
No 208
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=31.40 E-value=1.5e+02 Score=30.96 Aligned_cols=102 Identities=17% Similarity=0.186 Sum_probs=55.9
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEE-EecCchH--HHh-hhCCCCeEeCCCCChHhHHHHHHHHhcCC
Q 003435 10 RGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVL-VTTRSGR--VAS-MMGTVPTQHLTCLSSEDSWVLFKHFAFGS 85 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~ii-iTtr~~~--~~~-~~~~~~~~~l~~l~~~~a~~Lf~~~~~~~ 85 (820)
.+++.+|+||++..-.....+.+...+.. + ...+| .||.+.. +.. .......+.+++++.++..+++.+.+-..
T Consensus 104 ~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~ 181 (447)
T 3pvs_A 104 AGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK 181 (447)
T ss_dssp TTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCT
T ss_pred cCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHH
Confidence 46789999999976443344444444432 2 23344 3554432 111 11122379999999999999998876431
Q ss_pred CC----CCChhHHHHHHHHHHHhcCChHHHHH
Q 003435 86 VE----DESTELEEIGQKIVAKCKGLPIAIKT 113 (820)
Q Consensus 86 ~~----~~~~~~~~~~~~i~~~c~glPlal~~ 113 (820)
.. ....--.+....+++.++|-+-.+.-
T Consensus 182 ~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln 213 (447)
T 3pvs_A 182 TRGYGGQDIVLPDETRRAIAELVNGDARRALN 213 (447)
T ss_dssp TTSSTTSSEECCHHHHHHHHHHHCSCHHHHHH
T ss_pred hhhhccccCcCCHHHHHHHHHHCCCCHHHHHH
Confidence 11 00111234667788888887654443
No 209
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=30.72 E-value=1.4e+02 Score=31.35 Aligned_cols=92 Identities=12% Similarity=-0.069 Sum_probs=58.1
Q ss_pred EEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEec---------Cc---------hHHHhhhCCCCeEeCCCCChHhHHH
Q 003435 15 LIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTT---------RS---------GRVASMMGTVPTQHLTCLSSEDSWV 76 (820)
Q Consensus 15 llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTt---------r~---------~~~~~~~~~~~~~~l~~l~~~~a~~ 76 (820)
++++|++..-..+..+.+....-..... .+|+.| .+ ..+.+.|. .+.+++++.++..+
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~---~~~~~~~~~~e~~~ 373 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVM---IIRTMLYTPQEMKQ 373 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEE---EEECCCCCHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcc---eeeCCCCCHHHHHH
Confidence 8999999877677788887776544334 344344 11 12444443 57999999999999
Q ss_pred HHHHHhcCCCCCCChhHHHHHHHHHHHh-cCChHHHHH
Q 003435 77 LFKHFAFGSVEDESTELEEIGQKIVAKC-KGLPIAIKT 113 (820)
Q Consensus 77 Lf~~~~~~~~~~~~~~~~~~~~~i~~~c-~glPlal~~ 113 (820)
.+...+-...... -.+.+..+++.+ .|-|-+...
T Consensus 374 iL~~~~~~~~~~~---~~~~~~~i~~~a~~g~~r~a~~ 408 (456)
T 2c9o_A 374 IIKIRAQTEGINI---SEEALNHLGEIGTKTTLRYSVQ 408 (456)
T ss_dssp HHHHHHHHHTCCB---CHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHhCCCC---CHHHHHHHHHHccCCCHHHHHH
Confidence 9987652111111 134567778888 787764443
No 210
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=30.64 E-value=31 Score=18.78 Aligned_cols=17 Identities=18% Similarity=0.579 Sum_probs=13.6
Q ss_pred cCChHHHHHHHHhhccC
Q 003435 105 KGLPIAIKTIGSILRSK 121 (820)
Q Consensus 105 ~glPlal~~~~~~l~~k 121 (820)
.-+|+|+.++|+.+...
T Consensus 9 rklplavav~agv~~aq 25 (28)
T 2vda_B 9 RKLPLAVAVAAGVMSAQ 25 (28)
T ss_dssp CCCTHHHHHHHHTTCCC
T ss_pred ccCchHHHHHHHHhHhh
Confidence 45899999999887643
No 211
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=29.58 E-value=3e+02 Score=28.57 Aligned_cols=100 Identities=15% Similarity=0.055 Sum_probs=57.3
Q ss_pred CceEEEEEeCCCCCC-------hh----hHHHHHhhccC---CCCCcEEEEecCchH-----HHhhhCCCCeEeCCCCCh
Q 003435 11 GRGFLIVLDDVWDED-------GE----NMEKALSWLNV---GGSGSCVLVTTRSGR-----VASMMGTVPTQHLTCLSS 71 (820)
Q Consensus 11 ~~~~llvlDdv~~~~-------~~----~~~~~~~~~~~---~~~gs~iiiTtr~~~-----~~~~~~~~~~~~l~~l~~ 71 (820)
.+..+|+||+++.-. .+ ....+...+.. ...+..||.||.... +.+. ....+.++..+.
T Consensus 226 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rR--f~~~i~i~~P~~ 303 (444)
T 2zan_A 226 NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRR--FEKRIYIPLPEA 303 (444)
T ss_dssp SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTT--CCEEEECCCCCH
T ss_pred cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhh--cceEEEeCCcCH
Confidence 456899999996421 01 12223333322 234666777776532 2222 224788999999
Q ss_pred HhHHHHHHHHhcCCCCCCChhHHHHHHHHHHHhcCC-hHHHHHHH
Q 003435 72 EDSWVLFKHFAFGSVEDESTELEEIGQKIVAKCKGL-PIAIKTIG 115 (820)
Q Consensus 72 ~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plal~~~~ 115 (820)
++...+|............ ......+++.+.|. +-.|..+.
T Consensus 304 ~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 304 HARAAMFRLHLGSTQNSLT---EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp HHHHHHHHHHHTTSCEECC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999887643221111 23456778888884 54555443
No 212
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=28.79 E-value=4.2e+02 Score=25.91 Aligned_cols=101 Identities=15% Similarity=0.058 Sum_probs=57.1
Q ss_pred CCceEEEEEeCCCCCC-------hhh----HHHHHhhccC---CCCCcEEEEecCch-----HHHhhhCCCCeEeCCCCC
Q 003435 10 RGRGFLIVLDDVWDED-------GEN----MEKALSWLNV---GGSGSCVLVTTRSG-----RVASMMGTVPTQHLTCLS 70 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~-------~~~----~~~~~~~~~~---~~~gs~iiiTtr~~-----~~~~~~~~~~~~~l~~l~ 70 (820)
..+..+|++|+++.-. .+. ...+...+.. ...+..||.||... .+.+. -...+.++..+
T Consensus 103 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rR--f~~~i~i~~P~ 180 (322)
T 1xwi_A 103 ENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRR--FEKRIYIPLPE 180 (322)
T ss_dssp HTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHT--CCEEEECCCCC
T ss_pred hcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhh--cCeEEEeCCcC
Confidence 3567899999996420 011 1222222221 23455566666543 23332 23478999999
Q ss_pred hHhHHHHHHHHhcCCCCCCChhHHHHHHHHHHHhcCC-hHHHHHHH
Q 003435 71 SEDSWVLFKHFAFGSVEDESTELEEIGQKIVAKCKGL-PIAIKTIG 115 (820)
Q Consensus 71 ~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plal~~~~ 115 (820)
.++-.+++............ ......+++.+.|. +-.|..+.
T Consensus 181 ~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 181 PHARAAMFKLHLGTTQNSLT---EADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp HHHHHHHHHHHHTTCCBCCC---HHHHHHHHHTCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999887643221111 23457788888886 54455544
No 213
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=26.78 E-value=30 Score=29.80 Aligned_cols=40 Identities=20% Similarity=0.210 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCCChhhHHHHHhhccC-CCCCc-EEEEecCc
Q 003435 12 RGFLIVLDDVWDEDGENMEKALSWLNV-GGSGS-CVLVTTRS 51 (820)
Q Consensus 12 ~~~llvlDdv~~~~~~~~~~~~~~~~~-~~~gs-~iiiTtr~ 51 (820)
+.-+|||||+.......-+.+...+.. ...|. +||+||+.
T Consensus 83 ~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 345889999966433222222222111 11233 48888874
No 214
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=26.69 E-value=4.3e+02 Score=25.25 Aligned_cols=100 Identities=12% Similarity=0.039 Sum_probs=54.8
Q ss_pred CCceEEEEEeCCCCCC-----------hhhHHHHHhh---ccCC--CCCcEEEEecCch-----HHHhhhCCCCeEeCCC
Q 003435 10 RGRGFLIVLDDVWDED-----------GENMEKALSW---LNVG--GSGSCVLVTTRSG-----RVASMMGTVPTQHLTC 68 (820)
Q Consensus 10 ~~~~~llvlDdv~~~~-----------~~~~~~~~~~---~~~~--~~gs~iiiTtr~~-----~~~~~~~~~~~~~l~~ 68 (820)
..+..+|++|++..-. ......+... .+.. +.+..||.||... .+.+.+. ..+.++.
T Consensus 111 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~--~~i~~~~ 188 (297)
T 3b9p_A 111 HMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFT--KRVYVSL 188 (297)
T ss_dssp HTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCC--EEEECCC
T ss_pred HcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCC--eEEEeCC
Confidence 3566899999995421 0111112221 2111 2345677777653 3333332 4688888
Q ss_pred CChHhHHHHHHHHhcCCCCCCChhHHHHHHHHHHHhcCChH-HHHHH
Q 003435 69 LSSEDSWVLFKHFAFGSVEDESTELEEIGQKIVAKCKGLPI-AIKTI 114 (820)
Q Consensus 69 l~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-al~~~ 114 (820)
.+.++..+++...+-....... .+....+++.+.|.+- ++..+
T Consensus 189 p~~~~r~~il~~~~~~~~~~~~---~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 189 PDEQTRELLLNRLLQKQGSPLD---TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp CCHHHHHHHHHHHHGGGSCCSC---HHHHHHHHHHTTTCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 8888888888776532211111 2356778888888775 55444
No 215
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=26.29 E-value=4.4e+02 Score=26.59 Aligned_cols=69 Identities=10% Similarity=0.096 Sum_probs=41.8
Q ss_pred CcEEEEecCchH-----HHhhhCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCChhHHHHHHHHHHHhcCChH-HHHHHH
Q 003435 42 GSCVLVTTRSGR-----VASMMGTVPTQHLTCLSSEDSWVLFKHFAFGSVEDESTELEEIGQKIVAKCKGLPI-AIKTIG 115 (820)
Q Consensus 42 gs~iiiTtr~~~-----~~~~~~~~~~~~l~~l~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-al~~~~ 115 (820)
...||.||.... +.+.+ ...+.++..+.++..+++...+-....... .+....+++.+.|..- ++..+.
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~--~~~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRF--IKRVYVSLPNEETRLLLLKNLLCKQGSPLT---QKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTC--CEEEECCCCCHHHHHHHHHHHHTTSCCCSC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCc--ceEEEcCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 445666665422 22222 236889999999999999887643322111 2356788888888543 555543
No 216
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=23.73 E-value=2.2e+02 Score=21.47 Aligned_cols=100 Identities=17% Similarity=0.154 Sum_probs=54.6
Q ss_pred HHHHHHHcCCceEEEEEeCCCCCChhhHHHHHhhccCCCCCcEEEEecCchHHHhhh-------CCCCeEeCCCCChHhH
Q 003435 2 WWKLEVYWRGRGFLIVLDDVWDEDGENMEKALSWLNVGGSGSCVLVTTRSGRVASMM-------GTVPTQHLTCLSSEDS 74 (820)
Q Consensus 2 ~~~l~~~l~~~~~llvlDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTtr~~~~~~~~-------~~~~~~~l~~l~~~~a 74 (820)
+.++++.....-|-+ -||.+ .+.+..-..-+....+--+|+|+|.++++...| |. +++-+-.-.++.-
T Consensus 15 ikkikkevenqgyqv--rdvnd--sdelkkemkklaeeknfekiliisndkqllkemlelisklgy-kvflllqdqdene 89 (134)
T 2lci_A 15 IKKIKKEVENQGYQV--RDVND--SDELKKEMKKLAEEKNFEKILIISNDKQLLKEMLELISKLGY-KVFLLLQDQDENE 89 (134)
T ss_dssp HHHHHHHTTTTTCEE--EEECS--HHHHHHHHHHHHHCCSCCCEEEEESCHHHHHHHHHHHHHHTC-CEEEEEECSCHHH
T ss_pred HHHHHHHHHccCeee--eecCc--hHHHHHHHHHHHhhcCcceEEEEcCcHHHHHHHHHHHHHhCc-eeEEEeecCchhH
Confidence 567777777776643 45633 334433333333345667899999999887654 22 2443333344556
Q ss_pred HHHHHHHhcCCCC-----CCChhHHHHHHHHHHHhcC
Q 003435 75 WVLFKHFAFGSVE-----DESTELEEIGQKIVAKCKG 106 (820)
Q Consensus 75 ~~Lf~~~~~~~~~-----~~~~~~~~~~~~i~~~c~g 106 (820)
.+-|.++.-...- ...++...+.++.+.++|.
T Consensus 90 leefkrkiesqgyevrkvtddeealkivrefmqkags 126 (134)
T 2lci_A 90 LEEFKRKIESQGYEVRKVTDDEEALKIVREFMQKAGS 126 (134)
T ss_dssp HHHHHHHHHTTTCEEEEECCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCeeeeecCChHHHHHHHHHHHHhccc
Confidence 6677776522111 1223444566666665543
No 217
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=22.62 E-value=1.6e+02 Score=31.26 Aligned_cols=102 Identities=7% Similarity=0.067 Sum_probs=54.5
Q ss_pred cCCceEEEEEeCCCCC--------C---hhhHHHHHhhccC--CCCCcEEEEecCchHH-----HhhhCCCCeEeCCCCC
Q 003435 9 WRGRGFLIVLDDVWDE--------D---GENMEKALSWLNV--GGSGSCVLVTTRSGRV-----ASMMGTVPTQHLTCLS 70 (820)
Q Consensus 9 l~~~~~llvlDdv~~~--------~---~~~~~~~~~~~~~--~~~gs~iiiTtr~~~~-----~~~~~~~~~~~l~~l~ 70 (820)
-+++..+|+||+++.- . ......+...+.. ...+.+||.||..... .+...-...++++..+
T Consensus 294 ~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~ 373 (489)
T 3hu3_A 294 EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373 (489)
T ss_dssp HHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCC
T ss_pred HhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCC
Confidence 3456789999999320 0 0112223333321 2345566667765432 1111122378999999
Q ss_pred hHhHHHHHHHHhcCCCCCCChhHHHHHHHHHHHhcCC-hHHHHHH
Q 003435 71 SEDSWVLFKHFAFGSVEDESTELEEIGQKIVAKCKGL-PIAIKTI 114 (820)
Q Consensus 71 ~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plal~~~ 114 (820)
.++-.+++...+-.........+ .++++.+.|. +-++..+
T Consensus 374 ~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 374 ATGRLEILQIHTKNMKLADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp HHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCCcHHHHHHH
Confidence 99999999887643322222233 4455566664 5444443
No 218
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=22.55 E-value=45 Score=29.55 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCChhhHH--HHHhhccC-CCCCcEEEEecCc
Q 003435 13 GFLIVLDDVWDEDGENME--KALSWLNV-GGSGSCVLVTTRS 51 (820)
Q Consensus 13 ~~llvlDdv~~~~~~~~~--~~~~~~~~-~~~gs~iiiTtr~ 51 (820)
.-+|||||++......|. .+...+.. ...|..||+||..
T Consensus 101 ~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 101 SPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp CSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 458899999742223333 22222211 1257789988854
No 219
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=22.14 E-value=2.8e+02 Score=26.82 Aligned_cols=96 Identities=8% Similarity=0.053 Sum_probs=52.3
Q ss_pred CceEEEEEeCCCCCC--------------hhhHHHHHhhccC--CCCCcEEEEecCchHHHhh--h---CCCCeEeCCCC
Q 003435 11 GRGFLIVLDDVWDED--------------GENMEKALSWLNV--GGSGSCVLVTTRSGRVASM--M---GTVPTQHLTCL 69 (820)
Q Consensus 11 ~~~~llvlDdv~~~~--------------~~~~~~~~~~~~~--~~~gs~iiiTtr~~~~~~~--~---~~~~~~~l~~l 69 (820)
....+|++|+++.-. ......+...+.. ...+..||.||........ . .-...++++..
T Consensus 107 ~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p 186 (301)
T 3cf0_A 107 AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 186 (301)
T ss_dssp TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCC
T ss_pred cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCc
Confidence 456899999995310 0112333333321 2345677777766532221 1 12247899999
Q ss_pred ChHhHHHHHHHHhcCCCCCCChhHHHHHHHHHHHhcCChHH
Q 003435 70 SSEDSWVLFKHFAFGSVEDESTELEEIGQKIVAKCKGLPIA 110 (820)
Q Consensus 70 ~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 110 (820)
+.++-.+++....-+........+ ..+++.+.|.|-+
T Consensus 187 ~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 187 DEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp CHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred CHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 999999998776533221112223 3444556666543
No 220
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=20.46 E-value=1.6e+02 Score=27.96 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=24.2
Q ss_pred eEEEEEeCCCCCChhhHHHHHhhccCC-----------CCCcEEEEecCc
Q 003435 13 GFLIVLDDVWDEDGENMEKALSWLNVG-----------GSGSCVLVTTRS 51 (820)
Q Consensus 13 ~~llvlDdv~~~~~~~~~~~~~~~~~~-----------~~gs~iiiTtr~ 51 (820)
.-+|+||++..-..+..+.+...+... ..+.+||+||..
T Consensus 101 ~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 101 GGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp TSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred CcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 458999999776554445555444221 135678888765
Done!