BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003437
(820 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 104/225 (46%), Gaps = 20/225 (8%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDG-----KPVTTS 128
+L I+ GE++ ++GPSG+GKSTFL L + + EG + IDG K +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCL--NLLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 129 YMKMVSSYVMQDDQLFPMLTVFETFMFA-AEVRLPPSISRDEKKKRVYELLDQLGLRSAT 187
++ V Q LFP +TV A +VR P R++ + + ELLD++GL+
Sbjct: 76 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWP---REKAEAKAMELLDKVGLKDKA 132
Query: 188 HTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART 247
H Y + + +P ++ DEPTS LD V+ +K +A
Sbjct: 133 HAYPDSLSGGQAQRVAIARA-----LAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE 187
Query: 248 GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL---PAH 289
G +++ H+ + + + DR++ + G ++ G P L P H
Sbjct: 188 GMTMVVVTHEMGFARE-VGDRVLFMDGGYIIEEGKPEDLFDRPQH 231
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 104/225 (46%), Gaps = 20/225 (8%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDG-----KPVTTS 128
+L I+ GE++ ++GPSG+GKSTFL L + + EG + IDG K +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCL--NLLEDFDEGEIIIDGINLKAKDTNLN 96
Query: 129 YMKMVSSYVMQDDQLFPMLTVFETFMFA-AEVRLPPSISRDEKKKRVYELLDQLGLRSAT 187
++ V Q LFP +TV A +VR P R++ + + ELLD++GL+
Sbjct: 97 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWP---REKAEAKAMELLDKVGLKDKA 153
Query: 188 HTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART 247
H Y + + +P ++ DEPTS LD V+ +K +A
Sbjct: 154 HAYPDSLSGGQAQRVAIARA-----LAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE 208
Query: 248 GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL---PAH 289
G +++ H+ + + + DR++ + G ++ G P L P H
Sbjct: 209 GMTMVVVTHEMGFARE-VGDRVLFMDGGYIIEEGKPEDLFDRPQH 252
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 97/213 (45%), Gaps = 10/213 (4%)
Query: 69 TKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS 128
T+ L+++S G+I ++G SGAGKST + + + + EGSV +DG+ +TT
Sbjct: 15 TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV--NLLERPTEGSVLVDGQELTTL 72
Query: 129 YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSIS---RDEKKKRVYELLDQLGLRS 185
++ Q +F + + V LP + +DE K+RV ELL +GL
Sbjct: 73 SESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD 132
Query: 186 ATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA 245
+Y N + P +L DE TS LD + S++E +KDI
Sbjct: 133 KHDSYPSNLSGGQKQRVAIARA-----LASNPKVLLCDEATSALDPATTRSILELLKDIN 187
Query: 246 RTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278
R + ++ I ++ + D + V++ G L+
Sbjct: 188 RRLGLTILLITHEMDVVKRICDCVAVISNGELI 220
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 101/224 (45%), Gaps = 10/224 (4%)
Query: 69 TKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS 128
T+ L+++S G+I ++G SGAGKST + + + + EGSV +DG+ +TT
Sbjct: 38 TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV--NLLERPTEGSVLVDGQELTTL 95
Query: 129 YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSIS---RDEKKKRVYELLDQLGLRS 185
++ Q +F + + V LP + +DE K+RV ELL +GL
Sbjct: 96 SESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD 155
Query: 186 ATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA 245
+Y N + P +L D+ TS LD + S++E +KDI
Sbjct: 156 KHDSYPSNLSGGQKQRVAIARA-----LASNPKVLLCDQATSALDPATTRSILELLKDIN 210
Query: 246 RTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAH 289
R + ++ I ++ + D + V++ G L+ + + +H
Sbjct: 211 RRLGLTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSH 254
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 97/213 (45%), Gaps = 10/213 (4%)
Query: 69 TKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS 128
T+ L+++S G+I ++G SGAGKST + + + + EGSV +DG+ +TT
Sbjct: 38 TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV--NLLERPTEGSVLVDGQELTTL 95
Query: 129 YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSIS---RDEKKKRVYELLDQLGLRS 185
++ Q +F + + V LP + +DE K+RV ELL +GL
Sbjct: 96 SESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD 155
Query: 186 ATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA 245
+Y N + P +L D+ TS LD + S++E +KDI
Sbjct: 156 KHDSYPSNLSGGQKQRVAIARA-----LASNPKVLLCDQATSALDPATTRSILELLKDIN 210
Query: 246 RTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278
R + ++ I ++ + D + V++ G L+
Sbjct: 211 RRLGLTILLITHEMDVVKRICDCVAVISNGELI 243
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 11/210 (5%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS 134
L++I+ + GE MA++GPSG+GKST L +AG S G + D K VT K +
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTS--GKIYFDEKDVTELPPKDRN 76
Query: 135 -SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGN 193
V Q+ L+P +TV++ F E+R P R+E K+V E+ L + + Y
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAP---REEIDKKVREVAKMLHIDKLLNRYPWQ 133
Query: 194 XXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLM 253
++ +P +L LDEP S LD+ V ++K + + I +
Sbjct: 134 LSGGQQQRVAIARA-----LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTV 188
Query: 254 TIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
+ + DRI V+ G ++ +G+P
Sbjct: 189 YVTHDQAEALAMADRIAVIREGEILQVGTP 218
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 22/208 (10%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS------SYVM 138
GE I+GPSGAGK+TF+ +AG + G + D + V ++ +V V
Sbjct: 31 GERFGILGPSGAGKTTFMRIIAGLDVPST--GELYFDDRLVASNGKLIVPPEDRKIGMVF 88
Query: 139 QDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNXXXXX 198
Q L+P LT FE F +S++E +KRV E+ L + ++ N
Sbjct: 89 QTWALYPNLTAFENIAFPLT---NMKMSKEEIRKRVEEVAKILDIH-----HVLNHFPRE 140
Query: 199 XXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDS---TSAYSVVEKVKDIARTGSIVLMTI 255
++ PSLL LDEP S LD+ SA ++V++V+ +R G +L+
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ--SRLGVTLLVVS 198
Query: 256 HQPSYRIQMLLDRIIVLARGRLVYMGSP 283
H P+ I + DR+ VL +G+LV +G P
Sbjct: 199 HDPA-DIFAIADRVGVLVKGKLVQVGKP 225
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 22/208 (10%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS------SYVM 138
GE I+GPSGAGK+TF+ +AG + G + D + V ++ +V V
Sbjct: 31 GERFGILGPSGAGKTTFMRIIAGLDVPST--GELYFDDRLVASNGKLIVPPEDRKIGMVF 88
Query: 139 QDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNXXXXX 198
Q L+P LT FE F +S++E +KRV E+ L + ++ N
Sbjct: 89 QTWALYPNLTAFENIAFPLT---NMKMSKEEIRKRVEEVAKILDIH-----HVLNHFPRE 140
Query: 199 XXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDS---TSAYSVVEKVKDIARTGSIVLMTI 255
++ PSLL LDEP S LD+ SA ++V++V+ +R G +L+
Sbjct: 141 LSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ--SRLGVTLLVVS 198
Query: 256 HQPSYRIQMLLDRIIVLARGRLVYMGSP 283
H P+ I + DR+ VL +G+LV +G P
Sbjct: 199 HDPA-DIFAIADRVGVLVKGKLVQVGKP 225
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 93/214 (43%), Gaps = 25/214 (11%)
Query: 78 ISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE---GSVRIDGKPVTTSYMKMVS 134
+S + GE +A++GPSG GK+T L LAG S E V ++ P + MV
Sbjct: 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMV- 80
Query: 135 SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYE-----LLDQLGLRSATHT 189
Q+ L+P +TVFE F R IS+DE +KRV E L+D L R T
Sbjct: 81 ---FQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKPTQL 134
Query: 190 YIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGS 249
G ++ +P +L DEP S LD+ + ++K + +
Sbjct: 135 SGGQQQRVALARA----------LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELG 184
Query: 250 IVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
I + + + RI V +G+LV G+P
Sbjct: 185 ITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTP 218
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 106/241 (43%), Gaps = 23/241 (9%)
Query: 66 VW-ITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124
VW + E + ++S + GE M ++GPSG GK+T L +AG + G + I K
Sbjct: 9 VWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG--LEEPSRGQIYIGDKL 66
Query: 125 VTTSYMKMVS-------SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYEL 177
V + + V Q L+P +TV++ F ++R P R E +RV E+
Sbjct: 67 VADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVP---RQEIDQRVREV 123
Query: 178 LDQLGLRSATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSV 237
+ LGL T + N I+ KP + +DEP S LD+ +
Sbjct: 124 AELLGL-----TELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM 178
Query: 238 VEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL---PAH--LAG 292
++K + R + + + + DRI V+ RG L +GSP + PA+ +AG
Sbjct: 179 RAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAG 238
Query: 293 F 293
F
Sbjct: 239 F 239
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 24/217 (11%)
Query: 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT-SYMK 131
+ L ++S + GE I+GP+GAGK+ FL+ +AG S G + +DGK VT S K
Sbjct: 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDS--GRILLDGKDVTDLSPEK 71
Query: 132 MVSSYVMQDDQLFPMLTVFETFMFA---AEVRLPPSISRDEKKKRVYELLDQ--LGLRSA 186
++V Q+ LFP + V + F +++ P + + ++ LLD+ L L
Sbjct: 72 HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGG 131
Query: 187 THTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR 246
+ ++ P +L LDEP S LD + + E + + +
Sbjct: 132 EQQRVA----------------LARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK 175
Query: 247 TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
+ ++ I +++ DRI V+ G+L+ +G P
Sbjct: 176 KNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKP 212
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 114/251 (45%), Gaps = 21/251 (8%)
Query: 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS---Y 129
+ L I+ RGE+ AI+G +G GKST G + S G + D KP+ S
Sbjct: 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSS--GRILFDNKPIDYSRKGI 79
Query: 130 MKMVSSY--VMQD--DQLFPMLTVFETFMFAA-EVRLPPSISRDEKKKRVYELLDQLGLR 184
MK+ S V QD +QLF +V++ F A ++LP DE +KRV L + G+
Sbjct: 80 MKLRESIGIVFQDPDNQLFSA-SVYQDVSFGAVNMKLP----EDEIRKRVDNALKRTGIE 134
Query: 185 SATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI 244
++ + ++ +P +L LDEPT+GLD +++ + ++
Sbjct: 135 -----HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEM 189
Query: 245 ARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFGRTVPDGENSL 304
+ I ++ + + D + V+ GR++ G+P + A R V +
Sbjct: 190 QKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVI-RKVNLRLPRI 248
Query: 305 EYLLDVIKEYD 315
+L++++KE D
Sbjct: 249 GHLMEILKEKD 259
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 11/200 (5%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS-SYVMQDDQL 143
GE + ++GPSG GK+T L +AG + EG + + VT K + S V Q +
Sbjct: 37 GEFLVLLGPSGCGKTTTLRMIAG--LEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAV 94
Query: 144 FPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNXXXXXXXXXX 203
+P +TV+E F +++ P +DE KRV + L + + Y
Sbjct: 95 WPHMTVYENIAFPLKIKKFP---KDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVA 151
Query: 204 XXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQ 263
I+ +P +L +DEP S LD+ ++ ++K + + + + +
Sbjct: 152 VARA-----IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAM 206
Query: 264 MLLDRIIVLARGRLVYMGSP 283
+ DRI V+ RG+L+ +GSP
Sbjct: 207 TMGDRIAVMNRGQLLQIGSP 226
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 11/200 (5%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS-SYVMQDDQL 143
GE + ++GPSG GK+T L +AG + EG + + VT K + S V Q +
Sbjct: 38 GEFLVLLGPSGCGKTTTLRMIAG--LEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAV 95
Query: 144 FPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNXXXXXXXXXX 203
+P +TV+E F +++ P +DE KRV + L + + Y
Sbjct: 96 WPHMTVYENIAFPLKIKKFP---KDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVA 152
Query: 204 XXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQ 263
I+ +P +L +DEP S LD+ ++ ++K + + + + +
Sbjct: 153 VARA-----IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAM 207
Query: 264 MLLDRIIVLARGRLVYMGSP 283
+ DRI V+ RG+L+ +GSP
Sbjct: 208 TMGDRIAVMNRGQLLQIGSP 227
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 121/298 (40%), Gaps = 41/298 (13%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDG-------KPVTT 127
+ D+S + GE + ++GPSG GK+T L +AG + G + I+ K V
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAG--LEEPTRGQIYIEDNLVADPEKGVFV 79
Query: 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT 187
+ + V Q L+P TV++ F ++R P + E KRV E+ + LGL
Sbjct: 80 PPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVP---KQEIDKRVREVAEXLGL---- 132
Query: 188 HTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART 247
T + N II +P + DEP S LD+ ++K + R
Sbjct: 133 -TELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQ 191
Query: 248 GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL---PAH--LAGF--------- 293
+ + + DRI V +G L +G+P + P + +AGF
Sbjct: 192 LGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEVYYKPVNTFVAGFIGSPPXNFL 251
Query: 294 GRTVPD------GENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFPKI 345
T+ D GE L+ L D + +E +G V++ GI+P+ F I
Sbjct: 252 DATITDDGFLDFGEFKLKLLQDQFEVLEEENX-VGKEVIF---GIRPEDVHDASFTHI 305
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 92/214 (42%), Gaps = 13/214 (6%)
Query: 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT-SYM 130
A + +S Q GE++ ++GPSG+GK+T L +AG + +G V I GK VT
Sbjct: 28 ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG--LERPTKGDVWIGGKRVTDLPPQ 85
Query: 131 KMVSSYVMQDDQLFPMLTVFETFMFA-AEVRLPPSISRDEKKKRVYELLDQLGLRSATHT 189
K V Q+ LF +TV++ F E R+P +DE RV ELL + L S
Sbjct: 86 KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVP----KDEMDARVRELLRFMRLES---- 137
Query: 190 YIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGS 249
N + +P +L DEP + +D+ + V+ +
Sbjct: 138 -YANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMG 196
Query: 250 IVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
+ + + + DR++VL G + G+P
Sbjct: 197 VTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTP 230
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 16/212 (7%)
Query: 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKM 132
Y+L D++ + G+I ++G +G+GK+T L LAG +A G + +DG P ++
Sbjct: 25 YVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAA---GEIFLDGSPADPFLLRK 81
Query: 133 VSSYVMQD--DQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTY 190
YV Q+ Q+ TV E F+ E+ + E +KR+ ++L+ +GL
Sbjct: 82 NVGYVFQNPSSQIIGA-TVEEDVAFSLEIM---GLDESEMRKRIKKVLELVGLSGLAAAD 137
Query: 191 IGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSI 250
N + L LDEP S LD S + + ++ + G
Sbjct: 138 PLNLSGGQKQRLAIASM-----LARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKG 192
Query: 251 VLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
+++ H+ Y M D I+ ++ G + + GS
Sbjct: 193 IILVTHELEYLDDM--DFILHISNGTIDFCGS 222
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 62.4 bits (150), Expect = 9e-10, Method: Composition-based stats.
Identities = 59/212 (27%), Positives = 91/212 (42%), Gaps = 19/212 (8%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMV 133
+L IS +GE ++I+G SG+GKST L L + EG V ++GK V + K +
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILG--LLDAPTEGKVFLEGKEVDYTNEKEL 76
Query: 134 S-------SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA 186
S +V Q L P LT E + L + E K+R LL +LGL
Sbjct: 77 SLLRNRKLGFVFQFHYLIPELTALENVIVPM---LKMGKPKKEAKERGEYLLSELGLGDK 133
Query: 187 THTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR 246
+ + ++P LLF DEPT LDS + V++ I
Sbjct: 134 L-----SRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188
Query: 247 TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278
G+ ++M H+ + L R + + G++V
Sbjct: 189 GGTSIVMVTHE--RELAELTHRTLEMKDGKVV 218
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 19/214 (8%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS--YMK 131
+L IS + GEI ++GP+GAGK+T L ++ I S G V + GK V ++
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSS--GIVTVFGKNVVEEPHEVR 87
Query: 132 MVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYE---LLDQLGLRSATH 188
+ SY+ ++ + + E F A S +E +R E L +++ R +T+
Sbjct: 88 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTY 147
Query: 189 TYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTG 248
+ ++ P L LDEPTSGLD +A V + +K ++ G
Sbjct: 148 S-----------KGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 196
Query: 249 SIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
+L++ H ++ L DRI ++ G +V G+
Sbjct: 197 LTILVSSHN-MLEVEFLCDRIALIHNGTIVETGT 229
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 19/215 (8%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
LEFKN+ +S + KE +L ++ + G+ +A++G SG GKST + L
Sbjct: 388 LEFKNIHFSYPSR---------KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQ-LMQ 437
Query: 108 RIAQGSLEGSVRIDGKPVTT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPS 164
R+ L+G V IDG+ + T Y++ + V Q+ LF T+ E + E
Sbjct: 438 RLYD-PLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGREDVTMDE 495
Query: 165 ISRDEKKKRVYELLDQLGLRSATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDE 224
I + K+ Y+ + + L T +G ++ P +L LDE
Sbjct: 496 IEKAVKEANAYDFI--MKLPHQFDTLVGERGAQLSGGQKQRIAIARA-LVRNPKILLLDE 552
Query: 225 PTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259
TS LD T + +VV+ D AR G ++ H+ S
Sbjct: 553 ATSALD-TESEAVVQAALDKAREGRTTIVIAHRLS 586
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 102/221 (46%), Gaps = 14/221 (6%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV---TTSYM 130
+L +S + +G+ +A++G SG GKST + L R + GSV +DGK + ++
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE-RFYD-PMAGSVFLDGKEIKQLNVQWL 1105
Query: 131 KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP--PSISRDEKKKRVYELLDQLGLRSATH 188
+ V Q+ LF ++ E + R+ I R K+ +++ +D L +
Sbjct: 1106 RAQLGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDS--LPDKYN 1162
Query: 189 TYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTG 248
T +G+ ++ +P +L LDE TS LD T + VV++ D AR G
Sbjct: 1163 TRVGDKGTQLSGGQKQRIAIARA-LVRQPHILLLDEATSALD-TESEKVVQEALDKAREG 1220
Query: 249 SIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAH 289
++ H+ S IQ D I+V+ G++ G+ L A
Sbjct: 1221 RTCIVIAHRLS-TIQN-ADLIVVIQNGKVKEHGTHQQLLAQ 1259
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 19/215 (8%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
LEFKN+ +S + KE +L ++ + G+ +A++G SG GKST + L
Sbjct: 388 LEFKNIHFSYPSR---------KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQ-LMQ 437
Query: 108 RIAQGSLEGSVRIDGKPVTT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPS 164
R+ L+G V IDG+ + T Y++ + V Q+ LF T+ E + E
Sbjct: 438 RLYD-PLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGREDVTMDE 495
Query: 165 ISRDEKKKRVYELLDQLGLRSATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDE 224
I + K+ Y+ + + L T +G ++ P +L LDE
Sbjct: 496 IEKAVKEANAYDFI--MKLPHQFDTLVGERGAQLSGGQKQRIAIARA-LVRNPKILLLDE 552
Query: 225 PTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259
TS LD T + +VV+ D AR G ++ H+ S
Sbjct: 553 ATSALD-TESEAVVQAALDKAREGRTTIVIAHRLS 586
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 102/221 (46%), Gaps = 14/221 (6%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV---TTSYM 130
+L +S + +G+ +A++G SG GKST + L R + GSV +DGK + ++
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE-RFYD-PMAGSVFLDGKEIKQLNVQWL 1105
Query: 131 KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP--PSISRDEKKKRVYELLDQLGLRSATH 188
+ V Q+ LF ++ E + R+ I R K+ +++ +D L +
Sbjct: 1106 RAQLGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDS--LPDKYN 1162
Query: 189 TYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTG 248
T +G+ ++ +P +L LDE TS LD T + VV++ D AR G
Sbjct: 1163 TRVGDKGTQLSGGQKQRIAIARA-LVRQPHILLLDEATSALD-TESEKVVQEALDKAREG 1220
Query: 249 SIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAH 289
++ H+ S IQ D I+V+ G++ G+ L A
Sbjct: 1221 RTCIVIAHRLS-TIQN-ADLIVVIQNGKVKEHGTHQQLLAQ 1259
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 52/213 (24%), Positives = 85/213 (39%), Gaps = 16/213 (7%)
Query: 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT------ 126
Y L +++ GE ++IMGPSG+GKST L+ + EG V ID
Sbjct: 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIG--CLDKPTEGEVYIDNIKTNDLDDDE 76
Query: 127 -TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS 185
T + +V Q L P+LT E + ++S +E++KR E L L
Sbjct: 77 LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE 136
Query: 186 ATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI- 244
N + + P ++ D+PT LDS + +++ +K +
Sbjct: 137 R----FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLN 192
Query: 245 ARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277
G V++ H + +RII L G +
Sbjct: 193 EEDGKTVVVVTH--DINVARFGERIIYLKDGEV 223
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 52/213 (24%), Positives = 85/213 (39%), Gaps = 16/213 (7%)
Query: 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT------ 126
Y L +++ GE ++IMGPSG+GKST L+ + EG V ID
Sbjct: 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIG--CLDKPTEGEVYIDNIKTNDLDDDE 76
Query: 127 -TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS 185
T + +V Q L P+LT E + ++S +E++KR E L L
Sbjct: 77 LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE 136
Query: 186 ATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI- 244
N + + P ++ D+PT LDS + +++ +K +
Sbjct: 137 R----FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLN 192
Query: 245 ARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277
G V++ H + +RII L G +
Sbjct: 193 EEDGKTVVVVTH--DINVARFGERIIYLKDGEV 223
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 100/232 (43%), Gaps = 22/232 (9%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG--RIAQGSL-EGSVRIDGKPVTT 127
E + DI+ GE + +GPSG GKST L +AG I G L G R++ P
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE 74
Query: 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT 187
+ MV Q L+P L+V E F ++ ++ +RV ++ + L L
Sbjct: 75 RGVGMV----FQSYALYPHLSVAENMSFGLKL---AGAKKEVINQRVNQVAEVLQL---- 123
Query: 188 HTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSV-VEKVKDIAR 246
++ + ++ +PS+ LDEP S LD+ + +E + R
Sbjct: 124 -AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR 182
Query: 247 TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL---PAH--LAGF 293
G ++ H L D+I+VL GR+ +G P+ L PA +AGF
Sbjct: 183 LGRTMIYVTHD-QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGF 233
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 100/232 (43%), Gaps = 22/232 (9%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG--RIAQGSL-EGSVRIDGKPVTT 127
E + DI+ GE + +GPSG GKST L +AG I G L G R++ P
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE 74
Query: 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT 187
+ MV Q L+P L+V E F ++ ++ +RV ++ + L L
Sbjct: 75 RGVGMV----FQSYALYPHLSVAENMSFGLKL---AGAKKEVINQRVNQVAEVLQL---- 123
Query: 188 HTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSV-VEKVKDIAR 246
++ + ++ +PS+ LDEP S LD+ + +E + R
Sbjct: 124 -AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR 182
Query: 247 TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL---PAH--LAGF 293
G ++ H L D+I+VL GR+ +G P+ L PA +AGF
Sbjct: 183 LGRTMIYVTHD-QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGF 233
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 59.3 bits (142), Expect = 8e-09, Method: Composition-based stats.
Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 11/218 (5%)
Query: 70 KEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSY 129
++ L++D+S GE++AI+GP+GAGKST L L G ++ G + G+ + +
Sbjct: 22 QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS--HGECHLLGQNLNSWQ 79
Query: 130 MKMVS---SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKK-KRVYELLDQLGLRS 185
K ++ + + Q +L +V E R P S+D + ++V D L L
Sbjct: 80 PKALARTRAVMRQYSELAFPFSVSEVIQMG---RAPYGGSQDRQALQQVMAQTDCLALAQ 136
Query: 186 ATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA 245
+ + P LFLDEPTS LD + ++ +
Sbjct: 137 RDYRVLSGGEQQRVQLARVLAQLWQPQ--PTPRWLFLDEPTSALDLYHQQHTLRLLRQLT 194
Query: 246 RTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
R + + + + DRI++LA+G+LV G+P
Sbjct: 195 RQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTP 232
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 50/193 (25%), Positives = 93/193 (48%), Gaps = 13/193 (6%)
Query: 90 IMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT-SYMKMVSSYVMQDDQLFPMLT 148
++GP+GAGKS FL+ +AG + G VR++G +T + +V QD LFP L+
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD--RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLS 86
Query: 149 VFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNXXXXXXXXXXXXXXX 208
V+ + ++ R E+ +RV E+ ++LG+ ++ +
Sbjct: 87 VYRNIAYGLR-----NVERVERDRRVREMAEKLGI-----AHLLDRKPARLSGGERQRVA 136
Query: 209 XXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDR 268
++ +P LL LDEP S +D + ++E+++ + R + ++ + ML D
Sbjct: 137 LARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADE 196
Query: 269 IIVLARGRLVYMG 281
+ V+ GR+V G
Sbjct: 197 VAVMLNGRIVEKG 209
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 100/232 (43%), Gaps = 22/232 (9%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG--RIAQGSL-EGSVRIDGKPVTT 127
E + DI+ GE + +GPSG GKST L +AG I G L G R++ P
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE 74
Query: 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT 187
+ MV Q L+P L+V E F ++ ++ +RV ++ + L L
Sbjct: 75 RGVGMV----FQSYALYPHLSVAENMSFGLKL---AGAKKEVINQRVNQVAEVLQL---- 123
Query: 188 HTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSV-VEKVKDIAR 246
++ + ++ +PS+ LD+P S LD+ + +E + R
Sbjct: 124 -AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKR 182
Query: 247 TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL---PAH--LAGF 293
G ++ H L D+I+VL GR+ +G P+ L PA +AGF
Sbjct: 183 LGRTMIYVTHD-QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGF 233
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 92/220 (41%), Gaps = 19/220 (8%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMV 133
+L+DIS GEI+ I+G SG GK+T L LAG S G + + GK + + +
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDS--GEISLSGKTIFSKNTNLP 76
Query: 134 S-----SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRD-EKKKRVYELLDQLGLRSAT 187
Y++Q+ LFP LTV+ + L R ++++R+ +L+ G+
Sbjct: 77 VRERRLGYLVQEGVLFPHLTVYRNIAYG----LGNGKGRTAQERQRIEAMLELTGISELA 132
Query: 188 HTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEK-VKDIAR 246
Y + P L+ LDEP S LD + E + +
Sbjct: 133 GRY-----PHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRA 187
Query: 247 TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL 286
G + H +Q DRI V+ +GR++ SP L
Sbjct: 188 NGKSAVFVSHDREEALQY-ADRIAVMKQGRILQTASPHEL 226
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 52/213 (24%), Positives = 82/213 (38%), Gaps = 16/213 (7%)
Query: 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT------ 126
Y L +++ GE ++I GPSG+GKST L+ + EG V ID
Sbjct: 19 YALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIG--CLDKPTEGEVYIDNIKTNDLDDDE 76
Query: 127 -TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS 185
T + +V Q L P+LT E + + S +E++KR E L L
Sbjct: 77 LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEE 136
Query: 186 ATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI- 244
N + + P ++ DEPT LDS + + + +K +
Sbjct: 137 R----FANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLN 192
Query: 245 ARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277
G V++ H + +RII L G +
Sbjct: 193 EEDGKTVVVVTH--DINVARFGERIIYLKDGEV 223
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 62/221 (28%), Positives = 94/221 (42%), Gaps = 27/221 (12%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYM 130
E L ++S GE + + G +G+GKST L +AG I S G V DG+ +
Sbjct: 21 EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS--GDVLYDGERKKGYEI 78
Query: 131 KMVSSYVMQ--DDQLFPMLTVFETFMFAAEVRLPPSISRDE----KKKRVYELLDQLGLR 184
+ Q +DQ F VF+ FA + P RD KK + LD +
Sbjct: 79 RRNIGIAFQYPEDQFFAE-RVFDEVAFAVKNFYP---DRDPVPLVKKAMEFVGLDFDSFK 134
Query: 185 SATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLD---STSAYSVVEKV 241
++ I+H+P +L LDEP GLD T +VEK
Sbjct: 135 DRVPFFLSGGEKRRVAIASV--------IVHEPDILILDEPLVGLDREGKTDLLRIVEKW 186
Query: 242 KDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
K + +T V++ H I +DR++VL +G+ V+ G+
Sbjct: 187 KTLGKT---VILISHDIETVINH-VDRVVVLEKGKKVFDGT 223
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 62/221 (28%), Positives = 94/221 (42%), Gaps = 27/221 (12%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYM 130
E L ++S GE + + G +G+GKST L +AG I S G V DG+ +
Sbjct: 19 EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS--GDVLYDGERKKGYEI 76
Query: 131 KMVSSYVMQ--DDQLFPMLTVFETFMFAAEVRLPPSISRDE----KKKRVYELLDQLGLR 184
+ Q +DQ F VF+ FA + P RD KK + LD +
Sbjct: 77 RRNIGIAFQYPEDQFFAE-RVFDEVAFAVKNFYP---DRDPVPLVKKAMEFVGLDFDSFK 132
Query: 185 SATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLD---STSAYSVVEKV 241
++ I+H+P +L LDEP GLD T +VEK
Sbjct: 133 DRVPFFLSGGEKRRVAIASV--------IVHEPDILILDEPLVGLDREGKTDLLRIVEKW 184
Query: 242 KDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
K + +T V++ H I +DR++VL +G+ V+ G+
Sbjct: 185 KTLGKT---VILISHDIETVINH-VDRVVVLEKGKKVFDGT 221
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 29/192 (15%)
Query: 75 LHDISG---QAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMK 131
+H I G + RG+I+ ++G +GAGK+T L A+AG + + +G + +G+ +T
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKPAH 76
Query: 132 MVS----SYVMQDDQLFPMLTVFETFMFAAEVRL-PPSISRDEKK-----KRVYELLDQL 181
+++ + V + ++FP LTV+E A R I RD + R+ E L QL
Sbjct: 77 VINRXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQL 136
Query: 182 GLRSATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKV 241
G T G + +P LL DEP+ GL V E +
Sbjct: 137 G-----GTLSGGEQQXLAIGRA---------LXSRPKLLXXDEPSLGLAPILVSEVFEVI 182
Query: 242 KDIARTGSIVLM 253
+ I + G+ +L+
Sbjct: 183 QKINQEGTTILL 194
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 101/223 (45%), Gaps = 18/223 (8%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT--- 127
E +L +S G+ +A++GPSG GKST + AL R +L G + IDG + T
Sbjct: 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVV-ALLERFYD-TLGGEIFIDGSEIKTLNP 1148
Query: 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPS---ISRDEKKKRVYELLDQLG-L 183
+ + + V Q+ LF ++ E ++ L PS +++ E+ R+ + + + L
Sbjct: 1149 EHTRSQIAIVSQEPTLFD-CSIAENIIYG----LDPSSVTMAQVEEAARLANIHNFIAEL 1203
Query: 184 RSATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKD 243
T +G+ ++ P +L LDE TS LD T + VV++ D
Sbjct: 1204 PEGFETRVGDRGTQLSGGQKQRIAIARA-LVRNPKILLLDEATSALD-TESEKVVQEALD 1261
Query: 244 IARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL 286
AR G ++ H+ M D I V++ G ++ G+ L
Sbjct: 1262 RAREGRTCIVIAHR--LNTVMNADCIAVVSNGTIIEKGTHTQL 1302
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 30/217 (13%)
Query: 85 GEIMAIMGPSGAGKSTFL-------DALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYV 137
G+ +A++G SG GKST + D L G+I +++G +D + + +++ + V
Sbjct: 444 GQTVALVGSSGCGKSTIISLLLRYYDVLKGKI---TIDG---VDVRDINLEFLRKNVAVV 497
Query: 138 MQDDQLFPMLTVFETFMFAAEVRLPPSISRDE-----KKKRVYELLDQLGLRSATHTYIG 192
Q+ LF T+ E E I+R+E K + + L + +T +G
Sbjct: 498 SQEPALFN-CTIEENISLGKE-----GITREEMVAACKMANAEKFIKTL--PNGYNTLVG 549
Query: 193 NXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVL 252
+ ++ P +L LDE TS LD+ S +V++ D A G +
Sbjct: 550 DRGTQLSGGQKQRIAIARA-LVRNPKILLLDEATSALDAESE-GIVQQALDKAAKGRTTI 607
Query: 253 MTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAH 289
+ H+ S D II G++V +G AL A
Sbjct: 608 IIAHRLSTIRNA--DLIISCKNGQVVEVGDHRALMAQ 642
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 95/225 (42%), Gaps = 25/225 (11%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMV 133
+L DIS +A I+A GPSG GKST +L R Q + G + IDG+P+ ++
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIF-SLLERFYQPTA-GEITIDGQPIDNISLENW 74
Query: 134 SS---YVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS----- 185
S +V QD + T+ E + E D + ++++LD RS
Sbjct: 75 RSQIGFVSQDSAIMAG-TIRENLTYGLE--------GDYTDEDLWQVLDLAFARSFVENM 125
Query: 186 --ATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKD 243
+T +G + P +L LDE T+ LDS S S+V+K D
Sbjct: 126 PDQLNTEVGERGVKISGGQRQRLAIARA-FLRNPKILMLDEATASLDSESE-SMVQKALD 183
Query: 244 IARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPA 288
G L+ H+ S + D+I + +G++ G L A
Sbjct: 184 SLMKGRTTLVIAHRLSTIVDA--DKIYFIEKGQITGSGKHNELVA 226
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 92/222 (41%), Gaps = 12/222 (5%)
Query: 70 KEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDG---KPVT 126
EA +L DI+ +GE +A +G SG GKST ++ L R + G + IDG K
Sbjct: 352 NEAPILKDINLSIEKGETVAFVGMSGGGKSTLIN-LIPRFYDVT-SGQILIDGHNIKDFL 409
Query: 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA 186
T ++ V QD+ LF TV E + + K ++ + + L
Sbjct: 410 TGSLRNQIGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFI--MNLPQG 466
Query: 187 THTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR 246
T +G ++ P +L LDE TS LD S S++++ D+
Sbjct: 467 YDTEVGERGVKLSGGQKQRLSIARI-FLNNPPILILDEATSALDLESE-SIIQEALDVLS 524
Query: 247 TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPA 288
L+ H+ S D+I+V+ G +V G+ L A
Sbjct: 525 KDRTTLIVAHRLSTITHA--DKIVVIENGHIVETGTHRELIA 564
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 21/198 (10%)
Query: 65 GVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG--RIAQGSLEGSVRIDG 122
G + E +L ++ +G+I+A++G +G GKST LD L G R QG +E I
Sbjct: 11 GFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGF 70
Query: 123 KPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLG 182
P + +Y + D L T TF + + + + LD L
Sbjct: 71 VP---QFFSSPFAYSVLDIVLMGRSTHINTF----------AKPKSHDYQVAMQALDYLN 117
Query: 183 LRSATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVK 242
L T++ I + L+ LDEPTS LD + V+ +
Sbjct: 118 L-----THLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLI 172
Query: 243 DIARTGSI-VLMTIHQPS 259
D+A++ ++ V+ T HQP+
Sbjct: 173 DLAQSQNMTVVFTTHQPN 190
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 96/219 (43%), Gaps = 24/219 (10%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
LEFKN+ ++ + E + D S G + A++GPSG+GKST L L
Sbjct: 373 LEFKNVHFAYPAR---------PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLR 423
Query: 108 RIAQGSLEGSVRIDG---KPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPS 164
S G++ +DG + + +++ V Q+ LF ++ E + A+ PS
Sbjct: 424 LYDPAS--GTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGAD---DPS 477
Query: 165 ISRDEKKKRVYELLDQLG-LRS---ATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLL 220
E+ +RV E+ + + +R+ +T +G ++ P +L
Sbjct: 478 SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARA-LLKNPKIL 536
Query: 221 FLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259
LDE TS LD+ + Y +V++ D G VL+ H S
Sbjct: 537 LLDEATSALDAENEY-LVQEALDRLMDGRTVLVIAHHLS 574
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 112/264 (42%), Gaps = 43/264 (16%)
Query: 40 LKMIPGHG--------LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIM 91
+K +PG G +EF+N+ +S ++ L D+S + G+ +A++
Sbjct: 38 VKDLPGAGPLRFQKGRIEFENVHFSYADGRET-----------LQDVSFTVMPGQTLALV 86
Query: 92 GPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151
GPSGAGKST L L R S G +RIDG+ ++ + S++ + P TV
Sbjct: 87 GPSGAGKSTILRLLF-RFYDIS-SGCIRIDGQDISQVTQASLRSHI----GVVPQDTVLF 140
Query: 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT-------HTYIGNXXXXXXXXXXX 204
A +R + +++ V G+ A T +G
Sbjct: 141 NDTIADNIRYGRVTAGNDE---VEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQ 197
Query: 205 XXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQM 264
I+ P ++ LDE TS LD+++ ++ + + + +++ ++R+
Sbjct: 198 RVAIART-ILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVV-----AHRLST 251
Query: 265 LL--DRIIVLARGRLVYMGSPVAL 286
++ D+I+V+ G +V G AL
Sbjct: 252 VVNADQILVIKDGCIVERGRHEAL 275
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 97/219 (44%), Gaps = 24/219 (10%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
LEFKN+ ++ + E + D S G + A++GPSG+GKST L L
Sbjct: 342 LEFKNVHFAYPAR---------PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLR 392
Query: 108 RIAQGSLEGSVRIDG---KPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPS 164
S G++ +DG + + +++ V Q+ LF ++ E + A+ PS
Sbjct: 393 LYDPAS--GTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGAD---DPS 446
Query: 165 ISRDEKKKRVYELLDQLG-LRS---ATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLL 220
E+ +RV E+ + + +R+ +T +G ++ P +L
Sbjct: 447 SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARA-LLKNPKIL 505
Query: 221 FLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259
LDE TS LD+ + Y +V++ D G VL+ H+ S
Sbjct: 506 LLDEATSALDAENEY-LVQEALDRLMDGRTVLVIAHRLS 543
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 12/211 (5%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS---YM 130
+L +I+ +GE++ I+G SG+GKST L L R G V IDG + + ++
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKST-LTKLIQRFYIPE-NGQVLIDGHDLALADPNWL 77
Query: 131 KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTY 190
+ V+QD+ L ++ + A + K ++ + + LR +T
Sbjct: 78 RRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYNTI 134
Query: 191 IGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSI 250
+G +++ P +L DE TS LD S + ++ + I + G
Sbjct: 135 VGEQGAGLSGGQRQRIAIARA-LVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRT 192
Query: 251 VLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
V++ H+ S DRIIV+ +G++V G
Sbjct: 193 VIIIAHRLSTVKNA--DRIIVMEKGKIVEQG 221
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 12/211 (5%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS---YM 130
+L +I+ +GE++ I+G SG+GKST L L R G V IDG + + ++
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKST-LTKLIQRFYIPE-NGQVLIDGHDLALADPNWL 75
Query: 131 KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTY 190
+ V+QD+ L ++ + A + K ++ + + LR +T
Sbjct: 76 RRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYNTI 132
Query: 191 IGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSI 250
+G +++ P +L DE TS LD S + ++ + I + G
Sbjct: 133 VGEQGAGLSGGQRQRIAIARA-LVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRT 190
Query: 251 VLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
V++ H+ S DRIIV+ +G++V G
Sbjct: 191 VIIIAHRLSTVKNA--DRIIVMEKGKIVEQG 219
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 12/211 (5%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS---YM 130
+L +I+ +GE++ I+G SG+GKST L L R G V IDG + + ++
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKST-LTKLIQRFYIPE-NGQVLIDGHDLALADPNWL 81
Query: 131 KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTY 190
+ V+QD+ L ++ + A + K ++ + + LR +T
Sbjct: 82 RRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYNTI 138
Query: 191 IGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSI 250
+G +++ P +L DE TS LD S + ++ + I + G
Sbjct: 139 VGEQGAGLSGGQRQRIAIARA-LVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRT 196
Query: 251 VLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
V++ H+ S DRIIV+ +G++V G
Sbjct: 197 VIIIAHRLSTVKNA--DRIIVMEKGKIVEQG 225
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 93/211 (44%), Gaps = 12/211 (5%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS---YM 130
+L +I+ +GE++ I+G SG+GKST L L R G V IDG + + ++
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKST-LTKLIQRFYIPE-NGQVLIDGHDLALADPNWL 75
Query: 131 KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTY 190
+ V+QD+ L ++ + A + K ++ + + LR +T
Sbjct: 76 RRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYNTI 132
Query: 191 IGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSI 250
+G +++ P +L DE TS LD S + ++ + I + ++
Sbjct: 133 VGEQGAGLSGGQRQRIAIARA-LVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTV 191
Query: 251 VLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
+++ + + DRIIV+ +G++V G
Sbjct: 192 IIIAARLSTVKNA---DRIIVMEKGKIVEQG 219
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 93/211 (44%), Gaps = 12/211 (5%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS---YM 130
+L +I+ +GE++ I+G SG+GKST L L R G V IDG + + ++
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKST-LTKLIQRFYIPE-NGQVLIDGHDLALADPNWL 81
Query: 131 KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTY 190
+ V+QD+ L ++ + A + K ++ + + LR +T
Sbjct: 82 RRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYNTI 138
Query: 191 IGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSI 250
+G +++ P +L DE TS LD S + ++ + I + ++
Sbjct: 139 VGEQGAGLSGGQRQRIAIARA-LVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTV 197
Query: 251 VLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
+++ + + DRIIV+ +G++V G
Sbjct: 198 IIIAARLSTVKNA---DRIIVMEKGKIVEQG 225
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 22/222 (9%)
Query: 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV--------TTSYMKMVSS 135
+GE+ A+MGP+GAGKST LAG G + +DG+ + + +
Sbjct: 28 KGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQ 87
Query: 136 YVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDE---KKKRVYELLDQLGLRSATHTYIG 192
Y ++ P +T+ A + +L + E K K+ ELLD +Y+
Sbjct: 88 YPVE----VPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDW------DESYLS 137
Query: 193 NXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVL 252
++ +P+ LDE SGLD + V V + L
Sbjct: 138 RYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGAL 197
Query: 253 MTIHQPSYRIQMLLDRIIVLARGRLVYMGSP-VALPAHLAGF 293
+ H + D++ V+ GR+V G P +AL G+
Sbjct: 198 VITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAKGY 239
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 93/211 (44%), Gaps = 12/211 (5%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS---YM 130
+L +I+ +GE++ I+G +G+GKST L L R G V IDG + + ++
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKST-LTKLIQRFYIPE-NGQVLIDGHDLALADPNWL 77
Query: 131 KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTY 190
+ V+QD+ L ++ + A + K ++ + + LR +T
Sbjct: 78 RRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYNTI 134
Query: 191 IGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSI 250
+G +++ P +L DE TS LD S + ++ + I + G
Sbjct: 135 VGEQGAGLSGGQRQRIAIARA-LVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRT 192
Query: 251 VLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
V++ H+ S DRIIV+ +G++V G
Sbjct: 193 VIIIAHRLSTVKNA--DRIIVMEKGKIVEQG 221
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 93/211 (44%), Gaps = 12/211 (5%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS---YM 130
+L +I+ +GE++ I+G SG+GKST L L R G V IDG + + ++
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKST-LTKLIQRFYIPE-NGQVLIDGHDLALADPNWL 81
Query: 131 KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTY 190
+ V+QD+ L ++ + A + K ++ + + LR +T
Sbjct: 82 RRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYNTI 138
Query: 191 IGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSI 250
+G +++ P +L D+ TS LD S + ++ + I + G
Sbjct: 139 VGEQGAGLSGGQRQRIAIARA-LVNNPKILIFDQATSALDYESEHVIMRNMHKICK-GRT 196
Query: 251 VLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
V++ H+ S DRIIV+ +G++V G
Sbjct: 197 VIIIAHRLSTVKNA--DRIIVMEKGKIVEQG 225
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 92/210 (43%), Gaps = 31/210 (14%)
Query: 85 GEIMAIMGPSGAGKST-------FLDALAGRIAQGSLEGSVRIDGKPVTT---SYMKMVS 134
G A++G +G+GKST F DA EG ++I GK V + ++ +
Sbjct: 46 GTTCALVGHTGSGKSTIAKLLYRFYDA----------EGDIKIGGKNVNKYNRNSIRSII 95
Query: 135 SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNX 194
V QD LF T+ ++ + + K ++Y+ ++ L T +GN
Sbjct: 96 GIVPQDTILFNE-TIKYNILYGKLDATDEEVIKATKSAQLYDFIE--ALPKKWDTIVGNK 152
Query: 195 XXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMT 254
++ P ++ DE TS LDS + Y + V+D+ + +++++
Sbjct: 153 GMKLSGGERQRIAIARC-LLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIII- 210
Query: 255 IHQPSYRIQML--LDRIIVLARGRLVYMGS 282
++R+ + + II+L +G++V G+
Sbjct: 211 ----AHRLSTISSAESIILLNKGKIVEKGT 236
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 54/232 (23%), Positives = 103/232 (44%), Gaps = 27/232 (11%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV---TT 127
E+ L +SG+ GEI+ ++GP+GAGKST L +AG S +GS++ G+P+ +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG---MTSGKGSIQFAGQPLEAWSA 68
Query: 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT 187
+ + + +Y+ Q +T FA V ++ + +K + ELL+ + A
Sbjct: 69 TKLALHRAYLSQQ----------QTPPFATPVWHYLTLHQHDKTRT--ELLNDVAGALAL 116
Query: 188 HTYIGNXXXXXXXXXXXXXXXXXXDIIHKP------SLLFLDEPTSGLDSTSAYSVVEKV 241
+G + P LL LD+P LD ++ + +
Sbjct: 117 DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKIL 176
Query: 242 KDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG--SPVALPAHLA 291
+++ G ++M+ H ++ ++ R +L G+++ G V P +LA
Sbjct: 177 SALSQQGLAIVMSSHDLNHTLRH-AHRAWLLKGGKMLASGRREEVLTPPNLA 227
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 90/224 (40%), Gaps = 30/224 (13%)
Query: 79 SGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVM 138
+G+A GEI+ I+GP+G GK+TF L G I EGSV + K + SY
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITAD--EGSVTPE---------KQILSYKP 336
Query: 139 QDDQLFPML--TVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNXXX 196
Q ++FP TV + A++ L S E E+ +L L + + +
Sbjct: 337 Q--RIFPNYDGTVQQYLENASKDALSTSSWFFE------EVTKRLNLHRLLESNVNDLSG 388
Query: 197 XXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIH 256
+ + L LD+P+S LD Y V + +K + R V I
Sbjct: 389 GELQKLYIAAT-----LAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID 443
Query: 257 QPSYRIQMLLDRIIVLARGRLVYMG---SPVALPAHLAGFGRTV 297
+ DRIIV +G G SPV L + F R +
Sbjct: 444 HDLSIHDYIADRIIVF-KGEPEKAGLATSPVTLKTGMNEFLREL 486
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/176 (19%), Positives = 67/176 (38%), Gaps = 18/176 (10%)
Query: 87 IMAIMGPSGAGKSTFLDALAGRI---------AQGSLEGSVRIDGKPVTTSYMKMVSSYV 137
I+ ++G +G GK+T L LAG I G E R GK + +Y K + S
Sbjct: 27 ILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEI-YNYFKELYSNE 85
Query: 138 MQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNXXXX 197
++ + F+ + I KK V ELL+ T + N
Sbjct: 86 LKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNM--------TNLWNKDAN 137
Query: 198 XXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLM 253
++ + + D+P+S LD ++ + ++++ + ++++
Sbjct: 138 ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVV 193
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 30/187 (16%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT---SYMKMVSSYVMQDD 141
GE+ A++GP+G+GKST + AL + Q + G + +DGKP+ Y+ + V Q+
Sbjct: 43 GEVTALVGPNGSGKST-VAALLQNLYQPT-GGQLLLDGKPLPQYEHRYLHRQVAAVGQEP 100
Query: 142 QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIG--------- 192
Q+F L +I+ +K E + ++S H++I
Sbjct: 101 QVFGR-------------SLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTE 147
Query: 193 -NXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR--TGS 249
+ +I KP +L LD+ TS LD+ S V + + + + S
Sbjct: 148 VDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRS 207
Query: 250 IVLMTIH 256
++L+T H
Sbjct: 208 VLLITQH 214
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 111/265 (41%), Gaps = 54/265 (20%)
Query: 62 KKDGVWITKEAYLLHDIS------GQAIR---------GEIMAIMGPSGAGKSTFLDALA 106
KKD +W + + D++ G AI G+ + ++G +G+GKST L A
Sbjct: 9 KKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFL 68
Query: 107 GRIAQGSLEGSVRIDG---KPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVR--L 161
+ + EG ++IDG +T + + Q + F+F+ R L
Sbjct: 69 RLL---NTEGEIQIDGVSWDSITLEQWRKAFGVIPQ-----------KVFIFSGTFRKNL 114
Query: 162 PPSISRDEKKKRVYELLDQLGLRSATHTYIGNXX------XXXXXXXXXXXXXXXXDIIH 215
P+ + +++ ++++ D++GLRS + G ++
Sbjct: 115 DPNAAHSDQE--IWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172
Query: 216 KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLL--DRIIVLA 273
K +L LDEP++ LD + Y ++ + A V++ RI+ +L D+ +V+
Sbjct: 173 KAKILLLDEPSAHLDPVT-YQIIRRTLKQAFADCTVILC----EARIEAMLECDQFLVIE 227
Query: 274 RGRLVYMGSPVAL---PAH--LAGF 293
++ S + L PA +AGF
Sbjct: 228 ENKVRQYDSILELYHYPADRFVAGF 252
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 99/220 (45%), Gaps = 25/220 (11%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV---TT 127
E+ L +SG+ GEI+ ++GP+GAGKST L +AG S +GS++ G+P+ +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT---SGKGSIQFAGQPLEAWSA 68
Query: 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT 187
+ + + +Y+ Q +T FA V ++ + +K + ELL+ + A
Sbjct: 69 TKLALHRAYLSQQ----------QTPPFATPVWHYLTLHQHDKTR--TELLNDVAGALAL 116
Query: 188 HTYIGNXXXXXXXXXXXXXXXXXXDIIHKP------SLLFLDEPTSGLDSTSAYSVVEKV 241
+G + P LL LD+P + LD ++ + +
Sbjct: 117 DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKIL 176
Query: 242 KDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
+++ G ++M+ H ++ ++ R +L G+++ G
Sbjct: 177 SALSQQGLAIVMSSHDLNHTLRH-AHRAWLLKGGKMLASG 215
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 91/224 (40%), Gaps = 28/224 (12%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS 134
L +S +G++ I+GP+G+GKST ++ + G + EG V + K +T +
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEPAELY 80
Query: 135 SY----VMQDDQLFPMLTVFETFMFAAEVRLPPSIS-------------RDEKKKRVYEL 177
Y Q Q +TV E + + P S +E ++ +++
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIG---EINPGESPLNSLFYKKWIPKEEEMVEKAFKI 137
Query: 178 LDQLGLRSATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSV 237
L+ L L +H Y + ++ P ++ +DEP +G+ A+ +
Sbjct: 138 LEFLKL---SHLY--DRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI 192
Query: 238 VEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
V ++ G L+ H+ + +D + V+ G+++ G
Sbjct: 193 FNHVLELKAKGITFLIIEHRLDIVLNY-IDHLYVMFNGQIIAEG 235
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 54/232 (23%), Positives = 101/232 (43%), Gaps = 27/232 (11%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV---TT 127
E+ L +SG+ GEI+ ++GP+GAGKST L AG S +GS++ G+P+ +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXT---SGKGSIQFAGQPLEAWSA 68
Query: 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT 187
+ + + +Y+ Q +T FA V ++ + +K + ELL+ + A
Sbjct: 69 TKLALHRAYLSQQ----------QTPPFATPVWHYLTLHQHDKTRT--ELLNDVAGALAL 116
Query: 188 HTYIGNXXXXXXXXXXXXXXXXXXDIIHKP------SLLFLDEPTSGLDSTSAYSVVEKV 241
+G + P LL LDEP + LD ++ + +
Sbjct: 117 DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKIL 176
Query: 242 KDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG--SPVALPAHLA 291
+++ G ++ + H ++ ++ R +L G+ + G V P +LA
Sbjct: 177 SALSQQGLAIVXSSHDLNHTLRH-AHRAWLLKGGKXLASGRREEVLTPPNLA 227
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125
E+ L +SG+ GEI+ ++GP+GAGKST L AG S +GS++ G+P+
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXT---SGKGSIQFAGQPL 63
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 89/208 (42%), Gaps = 12/208 (5%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVM---QDD 141
G ++A++G +G+GKST ++ + I G V +D V T +K + ++ Q+
Sbjct: 369 GSLVAVLGETGSGKSTLMNLIPRLIDPE--RGRVEVDELDVRTVKLKDLRGHISAVPQET 426
Query: 142 QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNXXXXXXXX 201
LF T+ E + E I K ++++ + L + G
Sbjct: 427 VLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQK 485
Query: 202 XXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYR 261
++ KP +L LD+ TS +D + +++ +K + + ++T P+
Sbjct: 486 QRLSIARA---LVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPT-- 540
Query: 262 IQMLLDRIIVLARGRLVYMGSPVALPAH 289
+L D+I+VL G++ G+ L H
Sbjct: 541 -ALLADKILVLHEGKVAGFGTHKELLEH 567
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 91/224 (40%), Gaps = 28/224 (12%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS 134
L +S +G++ I+GP+G+GKST ++ + G + EG V + K +T +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEPAELY 80
Query: 135 SY----VMQDDQLFPMLTVFETFMFAAEVRLPPSIS-------------RDEKKKRVYEL 177
Y Q Q +TV E + + P S +E ++ +++
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIG---EICPGESPLNSLFYKKWIPKEEEMVEKAFKI 137
Query: 178 LDQLGLRSATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSV 237
L+ L L +H Y + ++ P ++ +DEP +G+ A+ +
Sbjct: 138 LEFLKL---SHLY--DRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI 192
Query: 238 VEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
V ++ G L+ H+ + +D + V+ G+++ G
Sbjct: 193 FNHVLELKAKGITFLIIEHRLDIVLNY-IDHLYVMFNGQIIAEG 235
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 46/227 (20%), Positives = 93/227 (40%), Gaps = 34/227 (14%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS 134
L +S +G++ I+GP+G+GKST ++ + G + EG V + K +T +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEPAELY 80
Query: 135 SY----VMQDDQLFPMLTVFETFMFAAEVRLPPSIS-------------RDEKKKRVYEL 177
Y Q Q +TV E + + P S +E ++ +++
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIG---EINPGESPLNSLFYKKWIPKEEEMVEKAFKI 137
Query: 178 LDQLGLRSATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSV 237
L+ L L +H Y + ++ P ++ +D+P +G+ A+ +
Sbjct: 138 LEFLKL---SHLY--DRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDI 192
Query: 238 VEKVKDIARTGSIVLMTIHQPSYRIQMLL---DRIIVLARGRLVYMG 281
V ++ G L+ H R+ ++L D + V+ G+++ G
Sbjct: 193 FNHVLELKAKGITFLIIEH----RLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 91/256 (35%), Gaps = 45/256 (17%)
Query: 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDAL 105
H L K+L S+ K +L +S GE+ AIMGP+G+GKST L
Sbjct: 19 HMLSIKDLHVSVEDKA------------ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATL 66
Query: 106 AGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSI 165
AGR G+V GK + + +D+ +F F + E+ P +
Sbjct: 67 AGREDYEVTGGTVEFKGKDLLA---------LSPEDRAGE--GIFMAFQYPVEI---PGV 112
Query: 166 SRD---------EKKKRVYELLDQLGLRSATHTYIG------NXXXXXXXXXXXXXXXXX 210
S + R E LD+ + I +
Sbjct: 113 SNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKR 172
Query: 211 XDIIH----KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLL 266
DI+ +P L LDE SGLD + V + V + ++ H +
Sbjct: 173 NDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKP 232
Query: 267 DRIIVLARGRLVYMGS 282
D + VL +GR+V G
Sbjct: 233 DYVHVLYQGRIVKSGD 248
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 87/221 (39%), Gaps = 41/221 (18%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLF 144
GE+ AIMGP+G+GKST LAGR G+V GK + + +D+
Sbjct: 27 GEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLA---------LSPEDRAG 77
Query: 145 PMLTVFETFMFAAEVRLPPSISRD---------EKKKRVYELLDQLGLRSATHTYIG--- 192
+F F + E+ P +S + R E LD+ + I
Sbjct: 78 E--GIFMAFQYPVEI---PGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLK 132
Query: 193 ---NXXXXXXXXXXXXXXXXXXDIIH----KPSLLFLDEPTSGLDSTSAYSVVEKVKDIA 245
+ DI+ +P L LDE SGLD + V + V +
Sbjct: 133 MPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSL- 191
Query: 246 RTG--SIVLMTIHQPSYRIQMLL--DRIIVLARGRLVYMGS 282
R G S +++T +Q RI + D + VL +GR+V G
Sbjct: 192 RDGKRSFIIVTHYQ---RILDYIKPDYVHVLYQGRIVKSGD 229
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 101/242 (41%), Gaps = 31/242 (12%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+EFKN+ +S KK+ +L DI+ G+ +A++GP+G+GK+T ++ L
Sbjct: 355 IEFKNVWFSYDKKKP-----------VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM- 402
Query: 108 RIAQGSLEGSVRIDG---KPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPS 164
R G + +DG + + S ++ V+QD LF TV E + P
Sbjct: 403 RFYDVD-RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGN-----PG 455
Query: 165 ISRDEKKKRVYELLDQLGLRSATHTY--IGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFL 222
+ +E K+ ++ Y + + P +L L
Sbjct: 456 ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILIL 515
Query: 223 DEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQML--LDRIIVLARGRLVYM 280
DE TS +D+ + S+ + + + +++ ++R+ + D IIVL G +V M
Sbjct: 516 DEATSNVDTKTEKSIQAAMWKLMEGKTSIII-----AHRLNTIKNADLIIVLRDGEIVEM 570
Query: 281 GS 282
G
Sbjct: 571 GK 572
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 51/232 (21%), Positives = 100/232 (43%), Gaps = 37/232 (15%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT------- 126
+L +S QA G++++I+G SG+GKSTFL + + EG++ ++G+ +
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCI--NFLEKPSEGAIIVNGQNINLVRDKDG 78
Query: 127 ---------TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYEL 177
++ + V Q L+ +TV E M A L +S+ + ++R +
Sbjct: 79 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKY 136
Query: 178 LDQLGL------RSATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDS 231
L ++G+ + H G + +P +L DEPTS LD
Sbjct: 137 LAKVGIDERAQGKYPVHLSGGQQQRVSIARA----------LAMEPDVLLFDEPTSALDP 186
Query: 232 TSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
V+ ++ +A G +++ H+ + + + +I L +G++ G P
Sbjct: 187 ELVGEVLRIMQQLAEEGKTMVVVTHEMGF-ARHVSSHVIFLHQGKIEEEGDP 237
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 76/193 (39%), Gaps = 24/193 (12%)
Query: 80 GQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQ 139
G+ +GE++ I+GP+G GK+TF+ LAG + EG V D +T +Y Y+
Sbjct: 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAG--VEEPTEGKVEWD---LTVAYK---PQYIKA 428
Query: 140 DDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNXXXXXX 199
+ + TV+E +L + + ELL LG+ + +
Sbjct: 429 EYE----GTVYELLSKIDSSKLNSNFYKT-------ELLKPLGIIDLYDRNVEDLSGGEL 477
Query: 200 XXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259
++ + LDEP++ LD +V ++ + + +
Sbjct: 478 QRVAIAAT-----LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 532
Query: 260 YRIQMLLDRIIVL 272
I + DR+IV
Sbjct: 533 LMIDYVSDRLIVF 545
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 38/190 (20%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLF 144
G ++ I+GP+G GK+T + LAG++ E + S+ ++ ++ + Q +
Sbjct: 117 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDN---------DSWDNVIRAFRGNELQNY 167
Query: 145 PMLTVFETFMFAAEVR----------LPPSISRDEKKKRVYELL---DQLG-----LRSA 186
FE E+R LP ++ K +V ELL D++G ++
Sbjct: 168 -----FERLK-NGEIRPVVKPQYVDLLPKAV-----KGKVRELLKKVDEVGKFEEVVKEL 216
Query: 187 THTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR 246
+ + ++ K F DEP+S LD V ++ +A
Sbjct: 217 ELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 276
Query: 247 TGSIVLMTIH 256
G VL+ H
Sbjct: 277 EGKAVLVVEH 286
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 101/248 (40%), Gaps = 35/248 (14%)
Query: 57 IMKKQKKDGVWITKEAYL--LHDISGQAIRGEIMAIMGPSGAGKSTFLDALA------GR 108
I++ + V++ +E + IS + + AI+G S +GKST ++A+ GR
Sbjct: 4 IIRVEDLRAVYLVREGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGR 63
Query: 109 IAQGSLEGSVRIDGKPVTTSYMKMVS-------SYVMQDDQ--LFPMLTVFETFMFAAE- 158
I L G V GK + T + + + V Q Q L P + V E F E
Sbjct: 64 I----LSGRVLYKGKDLLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEA 119
Query: 159 --VRLPPS--ISRDEKKKRVYELLDQLGLRSATHTYIGNXXXXXXXXXXXXXXXXXXDII 214
VR S I + +K R+ L + L S G ++
Sbjct: 120 HGVRWSHSELIEKASEKLRMVRLNPEAVLNSYPLQLSGGMKQRVLIALA---------LL 170
Query: 215 HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274
P +L LDEPTS LD + +++ +K++ + I L+ + L D++ V+
Sbjct: 171 LDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVTHDIAVAAELADKVAVIYG 230
Query: 275 GRLVYMGS 282
G LV S
Sbjct: 231 GNLVEYNS 238
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 76/193 (39%), Gaps = 24/193 (12%)
Query: 80 GQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQ 139
G+ +GE++ I+GP+G GK+TF+ LAG + EG V D +T +Y Y+
Sbjct: 363 GEIRKGEVIGIVGPNGIGKTTFVKMLAG--VEEPTEGKVEWD---LTVAYK---PQYIKA 414
Query: 140 DDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNXXXXXX 199
+ + TV+E +L + + ELL LG+ + +
Sbjct: 415 EYE----GTVYELLSKIDSSKLNSNFYKT-------ELLKPLGIIDLYDRNVEDLSGGEL 463
Query: 200 XXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259
++ + LDEP++ LD +V ++ + + +
Sbjct: 464 QRVAIAAT-----LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 518
Query: 260 YRIQMLLDRIIVL 272
I + DR+IV
Sbjct: 519 LMIDYVSDRLIVF 531
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 38/190 (20%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLF 144
G ++ I+GP+G GK+T + LAG++ E + S+ ++ ++ + Q +
Sbjct: 103 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDN---------DSWDNVIRAFRGNELQNY 153
Query: 145 PMLTVFETFMFAAEVR----------LPPSISRDEKKKRVYELL---DQLG-----LRSA 186
FE E+R LP ++ K +V ELL D++G ++
Sbjct: 154 -----FERLK-NGEIRPVVKPQYVDLLPKAV-----KGKVRELLKKVDEVGKFEEVVKEL 202
Query: 187 THTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR 246
+ + ++ K F DEP+S LD V ++ +A
Sbjct: 203 ELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 262
Query: 247 TGSIVLMTIH 256
G VL+ H
Sbjct: 263 EGKAVLVVEH 272
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 82/219 (37%), Gaps = 38/219 (17%)
Query: 80 GQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQ 139
G+ +GE++ I+GP+G GK+TF+ LAG + EG + D +T +Y Y+
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAG--VEEPTEGKIEWD---LTVAYK---PQYIKA 358
Query: 140 DDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNXXXXXX 199
D + TV+E +L + + ELL LG+ +
Sbjct: 359 DYE----GTVYELLSKIDASKLNSNFYKT-------ELLKPLGIIDLYDREVNELSGGEL 407
Query: 200 XXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259
++ + LDEP++ LD +V ++ + + +
Sbjct: 408 QRVAIAAT-----LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDV 462
Query: 260 YRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFGRTVP 298
I + DR+ V+ G P +GR +P
Sbjct: 463 LXIDYVSDRL-------XVFEGEP-------GKYGRALP 487
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 34/181 (18%), Positives = 76/181 (41%), Gaps = 20/181 (11%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRI------AQGSLEGSVR-IDGKPVTTSYMKMVSSYV 137
G ++ I+GP+G GKST + LAG++ S +G +R G + + K
Sbjct: 47 GXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEK------ 100
Query: 138 MQDDQLFPML--TVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNXX 195
+++ ++ P++ + A + ++ + + ++ ++ E++ L L + I +
Sbjct: 101 LKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLS 160
Query: 196 XXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTI 255
++ + F DEP+S LD + ++ ++ G VL+
Sbjct: 161 GGELQRVAIAAA-----LLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVE 215
Query: 256 H 256
H
Sbjct: 216 H 216
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 84/213 (39%), Gaps = 25/213 (11%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLF 144
G++ A++GP+G+GKST + AL + Q + G V +DG+P+ + + V Q
Sbjct: 45 GKVTALVGPNGSGKST-VAALLQNLYQPT-GGKVLLDGEPLVQYDHHYLHTQVAAVGQ-- 100
Query: 145 PMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIG----------NX 194
E +F R +I+ + E + + + S H +I
Sbjct: 101 ------EPLLFGRSFR--ENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGE 152
Query: 195 XXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGS-IVLM 253
+I KP LL LD+ TS LD+ + V + + S VL+
Sbjct: 153 TGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLL 212
Query: 254 TIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL 286
HQ S + I+ L G + G+ + L
Sbjct: 213 ITHQLS--LAERAHHILFLKEGSVCEQGTHLQL 243
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 25/170 (14%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK-PVTTSYMKM 132
+L IS Q +G+ + G +GAGK+T L+ L + + G+V + GK P Y
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNIL--NAYEPATSGTVNLFGKXPGKVGY--- 90
Query: 133 VSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSIS------------RDEKKKRVYELLDQ 180
S+ ++ F ++ E F V + IS DE + ++LL
Sbjct: 91 -SAETVRQHIGFVSHSLLEKFQEGERV-IDVVISGAFKSIGVYQDIDDEIRNEAHQLLKL 148
Query: 181 LGLRSATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLD 230
+G + YIG + +P +L LDEP +GLD
Sbjct: 149 VGXSAKAQQYIGYLSTGEKQRVXIARA-----LXGQPQVLILDEPAAGLD 193
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 97/232 (41%), Gaps = 17/232 (7%)
Query: 70 KEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV---T 126
KE L +S +G+ +A++G SG+GKST + S GS+ +DG V
Sbjct: 354 KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDS--GSICLDGHDVRDYK 411
Query: 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQL--GL 183
+ ++ + V Q+ LF T+ +AAE I + ++ E ++ + GL
Sbjct: 412 LTNLRRHFALVSQNVHLFND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGL 470
Query: 184 RSATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKD 243
T IG + P +L LDE TS LD+ S ++ + +
Sbjct: 471 ----DTVIGENGTSLSGGQRQRVAIARALLRDAP-VLILDEATSALDTESERAIQAALDE 525
Query: 244 IARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFGR 295
+ + + VL+ H+ S Q D I+V+ G ++ G L A + +
Sbjct: 526 LQKNKT-VLVIAHRLSTIEQA--DEILVVDEGEIIERGRHADLLAQDGAYAQ 574
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 49 EFKNLSYSIMKKQ----KKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDA 104
E+K L Y++ + W +L DI+ + RG+++A+ G +GAGK++ L
Sbjct: 6 EYKTLEYNLTTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMM 65
Query: 105 LAGRI--AQGSLEGSVRI 120
+ G + ++G ++ S RI
Sbjct: 66 IMGELEPSEGKIKHSGRI 83
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 22/163 (13%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLF 144
G++ A++GP+G+GKST + AL + Q + G V +DG+P+ + + V Q
Sbjct: 45 GKVTALVGPNGSGKST-VAALLQNLYQPT-GGKVLLDGEPLVQYDHHYLHTQVAAVGQ-- 100
Query: 145 PMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIG----------NX 194
E +F R +I+ + E + + + S H +I
Sbjct: 101 ------EPLLFGRSFR--ENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGE 152
Query: 195 XXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSV 237
+I KP LL LD TS LD+ + V
Sbjct: 153 TGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRV 195
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 22/163 (13%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLF 144
G++ A++GP+G+GKST + AL + Q + G V +DG+P+ + + V Q
Sbjct: 45 GKVTALVGPNGSGKST-VAALLQNLYQPT-GGKVLLDGEPLVQYDHHYLHTQVAAVGQ-- 100
Query: 145 PMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIG----------NX 194
E +F R +I+ + E + + + S H +I
Sbjct: 101 ------EPLLFGRSFR--ENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGE 152
Query: 195 XXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSV 237
+I KP LL LD TS LD+ + V
Sbjct: 153 TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRV 195
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI--AQGSLEGSVRI 120
+L DI+ + RG+++A+ G +GAGK++ L + G + ++G ++ S RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI 101
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI--AQGSLEGSVRI 120
+L DI+ + RG+++A+ G +GAGK++ L + G + ++G ++ S RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI 101
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI--AQGSLEGSVRI 120
+L DI+ + RG+++A+ G +GAGK++ L + G + ++G ++ S RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI 101
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI--AQGSLEGSVRI 120
+L DI+ + RG+++A+ G +GAGK++ L + G + ++G ++ S RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI 101
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI--AQGSLEGSVRI 120
+L DI+ + RG+++A+ G +GAGK++ L + G + ++G ++ S RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI 101
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI--AQGSLEGSVRI 120
+L DI+ + RG+++A+ G +GAGK++ L + G + ++G ++ S RI
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI 71
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI--AQGSLEGSVRI 120
+L DI+ + RG+++A+ G +GAGK++ L + G + ++G ++ S RI
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI 71
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 34.3 bits (77), Expect = 0.32, Method: Composition-based stats.
Identities = 35/187 (18%), Positives = 79/187 (42%), Gaps = 27/187 (14%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMV 133
+L I+ +G ++ GP+G GK+T L ++ + L+G + +G P+T K+
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITKVKGKI- 80
Query: 134 SSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDE-----KKKRVYELLDQLG-LRSAT 187
+ + ++ + P E ++ A ++++E + V +L +LG L T
Sbjct: 81 --FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGT 138
Query: 188 HTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART 247
+ ++ + LD+P +D S + V++ + +I +
Sbjct: 139 IRRV----------------QLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE 182
Query: 248 GSIVLMT 254
IV+++
Sbjct: 183 KGIVIIS 189
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 109/253 (43%), Gaps = 37/253 (14%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
LEF+N++++ + +E L +I+ + G+ +A++G SG+GKST + +L
Sbjct: 342 LEFRNVTFT----------YPGREVPALRNINLKIPAGKTVALVGRSGSGKST-IASLIT 390
Query: 108 RIAQGSLEGSVRIDG---KPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPS 164
R EG + +DG + T + ++ + V Q+ LF TV +A
Sbjct: 391 RFYDID-EGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYAR----TEE 444
Query: 165 ISRD--EKKKRVYELLDQLG-LRSATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLF 221
SR+ E+ R+ +D + + + T IG + P +L
Sbjct: 445 YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSP-ILI 503
Query: 222 LDEPTSGLDSTSAYSVVEKVKDIA--RTGSIV---LMTIHQPSYRIQMLLDRIIVLARGR 276
LDE TS LD+ S ++ + ++ RT ++ L TI Q D I+V+ G
Sbjct: 504 LDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQA--------DEIVVVEDGI 555
Query: 277 LVYMGSPVALPAH 289
+V G+ L A
Sbjct: 556 IVERGTHSELLAQ 568
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125
E + L +I+ + + GE + I+GP+G+GK+T L A++G + G++ I+G V
Sbjct: 17 ERFSLENINLE-VNGEKVIILGPNGSGKTTLLRAISGLL---PYSGNIFINGMEV 67
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 77 DISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI 109
DI+ Q +A++GP+GAGKST ++ L G +
Sbjct: 685 DINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL 717
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 77 DISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI 109
DI+ Q +A++GP+GAGKST ++ L G +
Sbjct: 691 DINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL 723
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 77 DISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI 109
DI+ Q +A++GP+GAGKST ++ L G +
Sbjct: 691 DINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL 723
>pdb|4EDH|A Chain A, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Adp,Tmp And
Mg.
pdb|4EDH|B Chain B, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Adp,Tmp And
Mg.
pdb|4ESH|A Chain A, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With
Deoxythymidine.
pdb|4GMD|A Chain A, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Azt
Monophosphate
pdb|4GMD|B Chain B, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Azt
Monophosphate
pdb|4GMD|C Chain C, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Azt
Monophosphate
pdb|4GMD|D Chain D, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Azt
Monophosphate
Length = 213
Score = 32.7 bits (73), Expect = 0.76, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Query: 82 AIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQ-D 140
A+ G + + GP GAGKST D LA R+ + +E V++ +P T + + ++
Sbjct: 3 AMTGLFVTLEGPEGAGKSTNRDYLAERLRERGIE--VQLTREPGGTPLAERIRELLLAPS 60
Query: 141 DQLFPMLTVFE-TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIG 192
D+ PM E MFAA + + R + L D+ AT+ Y G
Sbjct: 61 DE--PMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDR--FTDATYAYQG 109
>pdb|3UWK|A Chain A, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UWK|B Chain B, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
Length = 232
Score = 32.7 bits (73), Expect = 0.77, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 80 GQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQ 139
G + G + + GP GAGKST D LA R+ + +E V++ +P T + + ++
Sbjct: 18 GSHMTGLFVTLEGPEGAGKSTNRDYLAERLRERGIE--VQLTREPGGTPLAERIRELLLA 75
Query: 140 -DDQLFPMLTVFE-TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIG 192
D+ PM E MFAA + + R + L D+ AT+ Y G
Sbjct: 76 PSDE--PMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDR--FTDATYAYQG 126
>pdb|3UWO|A Chain A, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UWO|B Chain B, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
Length = 220
Score = 32.7 bits (73), Expect = 0.81, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 80 GQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQ 139
G + G + + GP GAGKST D LA R+ + +E V++ +P T + + ++
Sbjct: 6 GSHMTGLFVTLEGPEGAGKSTNRDYLAERLRERGIE--VQLTREPGGTPLAERIRELLLA 63
Query: 140 -DDQLFPMLTVFE-TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIG 192
D+ PM E MFAA + + R + L D+ AT+ Y G
Sbjct: 64 PSDE--PMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDR--FTDATYAYQG 114
>pdb|4DZS|A Chain A, Crystal Structure Of Yeast Puf4p Rna Binding Domain In
Complex With Ho-4be Mutant Rna
pdb|4DZS|B Chain B, Crystal Structure Of Yeast Puf4p Rna Binding Domain In
Complex With Ho-4be Mutant Rna
Length = 357
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 221 FLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280
FL + L S +A ++ E+ KD ++ LMT +Y IQ LL+ + R L +
Sbjct: 49 FLQKQLDILGSKAADAIFEETKDY----TVELMTDSFGNYLIQKLLEEVTTEQRIVLTKI 104
Query: 281 GSPVALPAHLAGFGRTVPDGENSLEYLLDVIKEYDESTVGLGPL 324
SP + L P G +L+ L++ IK +E+ + + L
Sbjct: 105 SSPHFVEISLN------PHGTRALQKLIECIKTDEEAQIVVDSL 142
>pdb|3BWT|A Chain A, Crystal Structure Of The Rna Binding Domain Of Puf4 From
Saccharomyces Cerevisiae
Length = 333
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 221 FLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280
FL + L S +A ++ E+ KD ++ LMT +Y IQ LL+ + R L +
Sbjct: 27 FLQKQLDILGSKAADAIFEETKDY----TVELMTDSFGNYLIQKLLEEVTTEQRIVLTKI 82
Query: 281 GSPVALPAHLAGFGRTVPDGENSLEYLLDVIKEYDESTVGLGPL 324
SP + L P G +L+ L++ IK +E+ + + L
Sbjct: 83 SSPHFVEISLN------PHGTRALQKLIECIKTDEEAQIVVDSL 120
>pdb|3BX2|A Chain A, Puf4 Rna Binding Domain Bound To Ho Endonuclease Rna 3'
Utr Recognition Sequence
pdb|3BX2|B Chain B, Puf4 Rna Binding Domain Bound To Ho Endonuclease Rna 3'
Utr Recognition Sequence
Length = 335
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 221 FLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280
FL + L S +A ++ E+ KD ++ LMT +Y IQ LL+ + R L +
Sbjct: 27 FLQKQLDILGSKAADAIFEETKDY----TVELMTDSFGNYLIQKLLEEVTTEQRIVLTKI 82
Query: 281 GSPVALPAHLAGFGRTVPDGENSLEYLLDVIKEYDESTVGLGPL 324
SP + L P G +L+ L++ IK +E+ + + L
Sbjct: 83 SSPHFVEISLN------PHGTRALQKLIECIKTDEEAQIVVDSL 120
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 51 KNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+ SY +KK + D V +E G+ EI+ +MG +G GK+T + LAG
Sbjct: 352 RAFSYPSLKKTQGDFVLNVEE--------GEFSDSEILVMMGENGTGKTTLIKLLAG 400
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 9/47 (19%)
Query: 71 EAYLLHDISGQAIR---------GEIMAIMGPSGAGKSTFLDALAGR 108
EA++ H S + + G+++ ++G +G GKST L LAG+
Sbjct: 80 EAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGK 126
>pdb|3BX3|A Chain A, Puf4 T650cC724R MUTANT BOUND TO COX17 RNA 3' UTR
Recognition Sequence
pdb|3BX3|B Chain B, Puf4 T650cC724R MUTANT BOUND TO COX17 RNA 3' UTR
Recognition Sequence
Length = 335
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 221 FLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280
FL + L S +A ++ E+ KD ++ LMT +Y IQ LL+ + R L +
Sbjct: 27 FLQKQLDILGSKAADAIFEETKDY----TVELMTDSFGNYLIQKLLEEVTTEQRIVLTKI 82
Query: 281 GSPVALPAHLAGFGRTVPDGENSLEYLLDVIKEYDESTVGLGPL 324
SP + L P G +L+ L++ IK +E+ + + L
Sbjct: 83 SSPHFVEISLN------PHGCRALQKLIECIKTDEEAQIVVDSL 120
>pdb|3UXM|A Chain A, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UXM|B Chain B, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UXM|C Chain C, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UXM|D Chain D, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
Length = 211
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 8/110 (7%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQ-DDQL 143
G + + GP GAGKST D LA R+ + +E V++ +P T + + ++ D+
Sbjct: 2 GLFVTLEGPEGAGKSTNRDYLAERLRERGIE--VQLTREPGGTPLAERIRELLLAPSDE- 58
Query: 144 FPMLTVFE-TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIG 192
PM E MFAA + + R + L D+ AT+ Y G
Sbjct: 59 -PMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDR--FTDATYAYQG 105
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 111/250 (44%), Gaps = 31/250 (12%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+EF+N++++ + ++ L +I+ + G+ +A++G SG+GKST + +L
Sbjct: 342 VEFRNVTFT----------YPGRDVPALRNINLKIPAGKTVALVGRSGSGKST-IASLIT 390
Query: 108 RIAQGSLEGSVRIDG---KPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPS 164
R EG + +DG + T + ++ + V Q+ LF TV +A
Sbjct: 391 RFYDID-EGEILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYAR----TEQ 444
Query: 165 ISRD--EKKKRVYELLDQLG-LRSATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLF 221
SR+ E+ R+ +D + + + T IG + P +L
Sbjct: 445 YSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSP-ILI 503
Query: 222 LDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQML--LDRIIVLARGRLVY 279
LDE TS LD+ S ++ + ++ + + +++ ++R+ + D I+V+ G +V
Sbjct: 504 LDEATSALDTESERAIQAALDELQKNRTSLVI-----AHRLSTIEKADEIVVVEDGVIVE 558
Query: 280 MGSPVALPAH 289
G+ L H
Sbjct: 559 RGTHNDLLEH 568
>pdb|1A5D|A Chain A, Gammae Crystallin From Rat Lens
pdb|1A5D|B Chain B, Gammae Crystallin From Rat Lens
pdb|1ZGT|A Chain A, Structure Of Hydrogenated Rat Gamma E Crystallin In H2o
pdb|1ZIE|A Chain A, Hydrogenated Gammae Crystallin In D2o Solvent
pdb|1ZIQ|A Chain A, Deuterated Gammae Crystallin In D2o Solvent
pdb|1ZIR|A Chain A, Deuterated Gammae Crystallin In H2o Solvent
Length = 173
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 696 FLTCGFFLKRGHIPPYWRWLHYISAIK 722
F C +FL+RG P Y +W+ + +++
Sbjct: 50 FTGCQYFLRRGDYPDYQQWMGFSDSVR 76
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 28/113 (24%)
Query: 90 IMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSY---MKMVSSYVMQDDQLFPM 146
+G +G GKST +D L + + +G+P T + ++Y +Q+ +
Sbjct: 47 CVGETGLGKSTLMDTLF----------NTKFEGEPATHTQPGVQLQSNTYDLQESNVRLK 96
Query: 147 LTVFETFMFAAEVRLPPSISRDEKKKRVYELLD---------QLGLRSATHTY 190
LT+ T F + I++++ K + E +D +L +R HTY
Sbjct: 97 LTIVSTVGFGDQ------INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTY 143
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI--AQGSLEGSVRI 120
+L +I+ +GE++AI G +G+GK++ L + G + ++G ++ S R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRV 101
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI--AQGSLEGSVRI 120
+L +I+ +GE++AI G +G+GK++ L + G + ++G ++ S R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRV 101
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI--AQGSLEGSVRI 120
+L +I+ +GE++AI G +G+GK++ L + G + ++G ++ S R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRV 101
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI--AQGSLEGSVRI 120
+L +I+ +GE++AI G +G+GK++ L + G + ++G ++ S R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRV 101
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI--AQGSLEGSVRI 120
+L +I+ +GE++AI G +G+GK++ L + G + ++G ++ S R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRV 101
>pdb|4E5U|A Chain A, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Thymidine
Monophosphate.
pdb|4E5U|B Chain B, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Thymidine
Monophosphate
Length = 213
Score = 29.6 bits (65), Expect = 7.5, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 82 AIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE 115
A G + + GP GAGKST D LA R+ + +E
Sbjct: 3 AXTGLFVTLEGPEGAGKSTNRDYLAERLRERGIE 36
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 29.3 bits (64), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 59 KKQKKDGVWITKEAYLLHDISGQAIR---GEIMAIMGPSGAGKSTFLDAL 105
++++ DG W+ H++ +++ G +A+ G SG+GKST ++ +
Sbjct: 621 ERRRPDGRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEV 670
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,499,618
Number of Sequences: 62578
Number of extensions: 850302
Number of successful extensions: 2160
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1979
Number of HSP's gapped (non-prelim): 163
length of query: 820
length of database: 14,973,337
effective HSP length: 107
effective length of query: 713
effective length of database: 8,277,491
effective search space: 5901851083
effective search space used: 5901851083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)