Query 003437
Match_columns 820
No_of_seqs 414 out of 3222
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 23:25:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003437.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003437hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061 Transporter, ABC super 100.0 2E-102 5E-107 914.7 59.9 585 44-820 22-613 (613)
2 TIGR00955 3a01204 The Eye Pigm 100.0 5E-100 1E-104 903.0 58.5 575 71-819 37-617 (617)
3 PLN03211 ABC transporter G-25; 100.0 7.4E-99 2E-103 893.2 64.4 603 44-816 36-659 (659)
4 PLN03140 ABC transporter G fam 100.0 1.2E-97 3E-102 939.9 65.7 591 45-819 865-1470(1470)
5 TIGR00956 3a01205 Pleiotropic 100.0 3.5E-97 8E-102 939.2 64.0 600 47-816 759-1391(1394)
6 TIGR00956 3a01205 Pleiotropic 100.0 1.1E-96 2E-101 934.7 61.6 606 70-816 72-695 (1394)
7 PLN03140 ABC transporter G fam 100.0 3.4E-95 7E-100 917.7 57.1 574 70-815 176-789 (1470)
8 KOG0065 Pleiotropic drug resis 100.0 2.8E-95 6E-100 865.0 39.5 580 47-796 787-1391(1391)
9 KOG0065 Pleiotropic drug resis 100.0 1.2E-88 2.6E-93 808.3 41.9 591 71-815 127-730 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 1.5E-53 3.2E-58 423.8 23.9 220 47-288 2-225 (240)
11 COG1135 AbcC ABC-type metal io 100.0 2.2E-50 4.8E-55 419.9 22.2 224 47-288 1-231 (339)
12 COG1125 OpuBA ABC-type proline 100.0 1.8E-49 3.8E-54 401.7 21.8 218 48-288 2-225 (309)
13 COG1127 Ttg2A ABC-type transpo 100.0 4.7E-48 1E-52 390.1 23.0 222 45-288 6-235 (263)
14 COG1136 SalX ABC-type antimicr 100.0 1.2E-47 2.7E-52 392.4 25.5 210 48-277 2-220 (226)
15 COG1131 CcmA ABC-type multidru 100.0 1.2E-47 2.6E-52 414.8 26.3 223 47-291 4-229 (293)
16 COG1120 FepC ABC-type cobalami 100.0 7.7E-48 1.7E-52 401.3 22.2 222 47-288 2-228 (258)
17 COG3842 PotA ABC-type spermidi 100.0 6.3E-48 1.4E-52 418.5 22.2 220 46-287 4-225 (352)
18 COG3638 ABC-type phosphate/pho 100.0 5.8E-48 1.3E-52 388.4 20.0 224 46-288 2-237 (258)
19 COG3839 MalK ABC-type sugar tr 100.0 1.7E-47 3.7E-52 413.1 24.4 219 47-288 3-223 (338)
20 COG1116 TauB ABC-type nitrate/ 100.0 4.5E-47 9.7E-52 388.5 23.7 204 47-275 3-207 (248)
21 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 6.7E-47 1.5E-51 392.3 25.2 220 46-288 3-227 (254)
22 COG4555 NatA ABC-type Na+ tran 100.0 1.9E-47 4.2E-52 374.8 17.1 220 48-289 2-223 (245)
23 COG2884 FtsE Predicted ATPase 100.0 6.7E-47 1.5E-51 368.2 20.7 213 48-282 2-220 (223)
24 COG1118 CysA ABC-type sulfate/ 100.0 5.3E-47 1.1E-51 393.6 20.0 222 47-289 2-228 (345)
25 TIGR02314 ABC_MetN D-methionin 100.0 3.3E-45 7.3E-50 403.0 28.4 221 48-287 2-229 (343)
26 PRK13537 nodulation ABC transp 100.0 3.7E-45 8E-50 398.6 27.9 221 46-289 6-228 (306)
27 COG1124 DppF ABC-type dipeptid 100.0 1.8E-45 3.9E-50 373.2 22.4 222 47-289 3-232 (252)
28 COG1117 PstB ABC-type phosphat 100.0 1E-45 2.3E-50 366.0 19.0 234 46-307 6-248 (253)
29 PRK11650 ugpC glycerol-3-phosp 100.0 8.1E-45 1.8E-49 402.8 27.8 220 47-288 3-224 (356)
30 PRK11432 fbpC ferric transport 100.0 1.6E-44 3.5E-49 399.4 28.5 219 47-288 6-226 (351)
31 TIGR03265 PhnT2 putative 2-ami 100.0 1.4E-44 3E-49 400.5 28.0 219 47-288 4-224 (353)
32 cd03261 ABC_Org_Solvent_Resist 100.0 1.8E-44 3.8E-49 379.2 26.8 218 48-287 1-225 (235)
33 COG1122 CbiO ABC-type cobalt t 100.0 7.5E-45 1.6E-49 378.5 23.4 220 47-289 3-229 (235)
34 PRK13536 nodulation factor exp 100.0 2.8E-44 6E-49 396.2 28.8 225 42-289 36-262 (340)
35 TIGR03258 PhnT 2-aminoethylpho 100.0 3.6E-44 7.8E-49 397.9 28.1 219 47-288 5-228 (362)
36 PRK09452 potA putrescine/sperm 100.0 6.3E-44 1.4E-48 397.4 28.6 219 47-288 14-234 (375)
37 PRK10851 sulfate/thiosulfate t 100.0 6.3E-44 1.4E-48 395.2 28.4 222 47-288 2-226 (353)
38 cd03265 ABC_DrrA DrrA is the A 100.0 1.3E-43 2.7E-48 369.0 26.4 215 48-285 1-218 (220)
39 COG1137 YhbG ABC-type (unclass 100.0 2.7E-45 5.9E-50 359.3 12.6 221 47-288 4-228 (243)
40 COG3840 ThiQ ABC-type thiamine 100.0 2.6E-44 5.7E-49 347.2 19.0 215 48-287 2-218 (231)
41 TIGR01288 nodI ATP-binding ABC 100.0 1.6E-43 3.5E-48 385.7 27.6 219 47-288 4-224 (303)
42 cd03259 ABC_Carb_Solutes_like 100.0 1.6E-43 3.5E-48 366.3 26.1 211 48-281 1-213 (213)
43 TIGR00960 3a0501s02 Type II (G 100.0 1.4E-43 3E-48 367.6 25.4 209 48-277 2-216 (216)
44 PRK11607 potG putrescine trans 100.0 2E-43 4.4E-48 393.9 28.3 219 47-288 19-239 (377)
45 PRK11000 maltose/maltodextrin 100.0 2E-43 4.3E-48 394.0 28.1 219 47-288 3-223 (369)
46 cd03296 ABC_CysA_sulfate_impor 100.0 3.4E-43 7.4E-48 370.4 27.5 220 47-286 2-224 (239)
47 cd03219 ABC_Mj1267_LivG_branch 100.0 2.6E-43 5.7E-48 370.4 26.3 220 48-287 1-231 (236)
48 PRK11153 metN DL-methionine tr 100.0 2.9E-43 6.3E-48 389.4 27.9 221 48-287 2-229 (343)
49 cd03218 ABC_YhbG The ABC trans 100.0 3E-43 6.4E-48 369.0 26.4 216 48-286 1-220 (232)
50 cd03293 ABC_NrtD_SsuB_transpor 100.0 6.4E-43 1.4E-47 363.8 27.4 216 48-284 1-219 (220)
51 PRK13643 cbiO cobalt transport 100.0 5.8E-43 1.2E-47 378.6 27.8 233 48-299 2-247 (288)
52 TIGR03522 GldA_ABC_ATP gliding 100.0 5.1E-43 1.1E-47 381.4 27.4 219 47-289 2-222 (301)
53 cd03301 ABC_MalK_N The N-termi 100.0 6.7E-43 1.5E-47 361.6 26.7 211 48-281 1-213 (213)
54 cd03258 ABC_MetN_methionine_tr 100.0 4.8E-43 1E-47 367.8 25.8 220 48-286 2-228 (233)
55 cd03269 ABC_putative_ATPase Th 100.0 4.9E-43 1.1E-47 362.0 25.3 210 48-281 1-210 (210)
56 cd03266 ABC_NatA_sodium_export 100.0 5.9E-43 1.3E-47 363.3 26.0 215 48-281 2-218 (218)
57 COG0411 LivG ABC-type branched 100.0 9.8E-44 2.1E-48 360.9 19.2 222 47-288 4-239 (250)
58 PRK13637 cbiO cobalt transport 100.0 1.3E-42 2.8E-47 375.7 28.9 224 47-288 2-234 (287)
59 cd03260 ABC_PstB_phosphate_tra 100.0 6.3E-43 1.4E-47 365.5 25.4 219 48-286 1-227 (227)
60 cd03263 ABC_subfamily_A The AB 100.0 6.7E-43 1.5E-47 363.4 25.3 217 48-286 1-219 (220)
61 TIGR01188 drrA daunorubicin re 100.0 4.7E-43 1E-47 381.9 24.9 207 72-289 6-214 (302)
62 cd03256 ABC_PhnC_transporter A 100.0 6.1E-43 1.3E-47 368.7 24.6 220 48-286 1-232 (241)
63 PRK11629 lolD lipoprotein tran 100.0 2.5E-42 5.3E-47 362.6 28.8 218 46-283 4-229 (233)
64 PRK09536 btuD corrinoid ABC tr 100.0 7.8E-43 1.7E-47 390.8 26.6 221 47-287 3-227 (402)
65 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 8.1E-43 1.8E-47 362.3 24.7 210 48-277 1-218 (218)
66 COG0444 DppD ABC-type dipeptid 100.0 5.3E-43 1.1E-47 370.1 23.4 228 48-288 2-243 (316)
67 PRK09493 glnQ glutamine ABC tr 100.0 1.6E-42 3.6E-47 365.4 27.0 218 48-287 2-224 (240)
68 PRK11831 putative ABC transpor 100.0 1.9E-42 4.1E-47 371.1 27.9 220 46-287 6-232 (269)
69 TIGR01186 proV glycine betaine 100.0 1.1E-42 2.5E-47 385.0 26.4 206 72-288 6-219 (363)
70 PRK13647 cbiO cobalt transport 100.0 2.6E-42 5.6E-47 371.0 28.2 218 47-286 4-225 (274)
71 PRK11264 putative amino-acid A 100.0 2E-42 4.4E-47 366.9 27.0 219 47-287 3-232 (250)
72 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2E-42 4.3E-47 365.3 26.6 217 48-286 1-223 (242)
73 COG4152 ABC-type uncharacteriz 100.0 2.1E-43 4.6E-48 355.3 18.0 221 47-291 2-222 (300)
74 PRK13631 cbiO cobalt transport 100.0 3.2E-42 7E-47 377.2 29.1 223 46-287 20-264 (320)
75 cd03224 ABC_TM1139_LivF_branch 100.0 1.2E-42 2.7E-47 361.8 24.6 214 48-286 1-219 (222)
76 PRK13634 cbiO cobalt transport 100.0 2E-42 4.2E-47 374.8 27.0 222 47-287 2-234 (290)
77 PRK15079 oligopeptide ABC tran 100.0 2.5E-42 5.5E-47 379.5 28.2 233 46-287 7-250 (331)
78 PRK11022 dppD dipeptide transp 100.0 3.1E-42 6.7E-47 378.5 28.5 229 47-288 3-243 (326)
79 PRK13651 cobalt transporter AT 100.0 2.2E-42 4.8E-47 376.2 26.8 222 47-287 2-253 (305)
80 cd03268 ABC_BcrA_bacitracin_re 100.0 1.6E-42 3.5E-47 357.5 24.4 207 48-281 1-208 (208)
81 TIGR02315 ABC_phnC phosphonate 100.0 1.1E-42 2.4E-47 367.2 23.5 220 48-286 2-233 (243)
82 PRK13650 cbiO cobalt transport 100.0 2.9E-42 6.4E-47 371.5 27.2 220 47-287 4-228 (279)
83 COG0410 LivF ABC-type branched 100.0 1E-42 2.2E-47 350.9 22.0 218 47-288 3-226 (237)
84 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2E-42 4.4E-47 370.9 25.0 205 72-287 37-249 (269)
85 PRK13646 cbiO cobalt transport 100.0 3.8E-42 8.2E-47 372.0 27.2 223 47-288 2-235 (286)
86 TIGR02673 FtsE cell division A 100.0 3.3E-42 7.2E-47 356.7 25.6 207 48-276 2-214 (214)
87 TIGR00972 3a0107s01c2 phosphat 100.0 4.9E-42 1.1E-46 363.4 27.4 218 48-287 2-231 (247)
88 PRK09473 oppD oligopeptide tra 100.0 5.5E-42 1.2E-46 376.9 28.5 230 46-288 11-251 (330)
89 cd03292 ABC_FtsE_transporter F 100.0 3.6E-42 7.8E-47 356.3 25.2 208 48-277 1-214 (214)
90 PRK10619 histidine/lysine/argi 100.0 7.2E-42 1.6E-46 364.3 28.0 220 46-287 4-240 (257)
91 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 7.6E-42 1.7E-46 359.5 27.6 217 48-288 2-221 (236)
92 cd03226 ABC_cobalt_CbiO_domain 100.0 2E-42 4.3E-47 356.2 22.5 204 49-278 1-205 (205)
93 TIGR01978 sufC FeS assembly AT 100.0 6.2E-42 1.3E-46 361.4 26.8 223 48-287 1-233 (243)
94 PRK10895 lipopolysaccharide AB 100.0 4.4E-42 9.5E-47 362.4 25.5 219 47-287 3-225 (241)
95 PRK11614 livF leucine/isoleuci 100.0 4.3E-42 9.4E-47 361.5 25.4 216 47-287 5-225 (237)
96 cd03234 ABCG_White The White s 100.0 6.9E-42 1.5E-46 357.5 26.7 222 47-281 3-226 (226)
97 PRK13641 cbiO cobalt transport 100.0 6.8E-42 1.5E-46 370.2 27.5 222 47-287 2-233 (287)
98 cd03264 ABC_drug_resistance_li 100.0 4.2E-42 9.1E-47 355.2 24.4 209 48-281 1-211 (211)
99 PRK11308 dppF dipeptide transp 100.0 9.6E-42 2.1E-46 374.6 28.6 231 46-288 4-244 (327)
100 PRK11248 tauB taurine transpor 100.0 1.2E-41 2.6E-46 362.0 28.4 212 48-284 2-216 (255)
101 PRK10908 cell division protein 100.0 9E-42 1.9E-46 355.6 26.8 209 48-278 2-216 (222)
102 PRK13636 cbiO cobalt transport 100.0 7.5E-42 1.6E-46 369.1 27.1 220 47-288 5-231 (283)
103 PRK11124 artP arginine transpo 100.0 7.9E-42 1.7E-46 360.7 26.6 217 47-286 2-228 (242)
104 PRK14268 phosphate ABC transpo 100.0 1E-41 2.3E-46 363.3 27.6 218 47-287 12-241 (258)
105 PRK15093 antimicrobial peptide 100.0 9.3E-42 2E-46 375.7 28.0 230 47-287 3-247 (330)
106 TIGR02211 LolD_lipo_ex lipopro 100.0 9.5E-42 2.1E-46 355.0 26.3 211 48-278 2-220 (221)
107 PRK14267 phosphate ABC transpo 100.0 1.2E-41 2.6E-46 361.6 27.3 221 47-287 4-236 (253)
108 PRK14247 phosphate ABC transpo 100.0 1.3E-41 2.8E-46 360.8 27.3 221 47-287 3-233 (250)
109 PRK11300 livG leucine/isoleuci 100.0 1.2E-41 2.6E-46 362.0 27.0 221 47-287 5-242 (255)
110 PRK13635 cbiO cobalt transport 100.0 1.1E-41 2.4E-46 367.0 27.0 220 47-288 5-229 (279)
111 cd03262 ABC_HisP_GlnQ_permease 100.0 7E-42 1.5E-46 353.9 24.5 208 48-277 1-213 (213)
112 PRK14273 phosphate ABC transpo 100.0 1.3E-41 2.7E-46 361.8 26.9 219 47-287 7-237 (254)
113 TIGR03411 urea_trans_UrtD urea 100.0 1.5E-41 3.2E-46 358.6 27.0 220 47-287 2-230 (242)
114 TIGR03005 ectoine_ehuA ectoine 100.0 1.4E-41 3.1E-46 360.9 26.8 218 48-287 1-235 (252)
115 PRK10070 glycine betaine trans 100.0 1.4E-41 2.9E-46 380.6 28.0 230 47-287 4-253 (400)
116 PRK13638 cbiO cobalt transport 100.0 1.2E-41 2.6E-46 365.4 26.3 217 48-287 2-224 (271)
117 cd03257 ABC_NikE_OppD_transpor 100.0 1.5E-41 3.1E-46 355.1 26.2 216 48-281 2-228 (228)
118 PRK13548 hmuV hemin importer A 100.0 1.4E-41 3.1E-46 362.2 26.5 218 47-287 2-229 (258)
119 PRK13644 cbiO cobalt transport 100.0 1.4E-41 3E-46 365.3 26.4 217 48-287 2-223 (274)
120 PRK14242 phosphate transporter 100.0 2.5E-41 5.4E-46 359.3 27.9 225 45-287 4-236 (253)
121 PRK13652 cbiO cobalt transport 100.0 2E-41 4.4E-46 364.7 27.6 219 47-287 3-226 (277)
122 PRK09984 phosphonate/organopho 100.0 1.4E-41 3.1E-46 363.1 25.9 222 47-286 4-240 (262)
123 PRK13649 cbiO cobalt transport 100.0 2.8E-41 6E-46 364.3 28.2 222 47-287 2-233 (280)
124 PRK11247 ssuB aliphatic sulfon 100.0 2.1E-41 4.6E-46 360.2 26.5 208 46-284 11-219 (257)
125 PRK14245 phosphate ABC transpo 100.0 3.2E-41 7E-46 357.8 27.8 223 47-287 3-233 (250)
126 cd03225 ABC_cobalt_CbiO_domain 100.0 1.1E-41 2.3E-46 352.1 23.4 207 49-276 1-211 (211)
127 COG4175 ProV ABC-type proline/ 100.0 2E-42 4.4E-47 359.5 17.4 231 47-288 4-254 (386)
128 TIGR03415 ABC_choXWV_ATP choli 100.0 1.9E-41 4.1E-46 377.0 26.3 229 48-287 1-253 (382)
129 PRK11231 fecE iron-dicitrate t 100.0 1.9E-41 4E-46 360.7 25.2 221 47-287 2-226 (255)
130 PRK14235 phosphate transporter 100.0 4.9E-41 1.1E-45 359.8 28.3 226 45-287 17-250 (267)
131 PRK13549 xylose transporter AT 100.0 2.1E-41 4.6E-46 394.2 27.7 223 47-287 5-231 (506)
132 TIGR02769 nickel_nikE nickel i 100.0 3.5E-41 7.6E-46 360.6 27.0 228 47-287 2-239 (265)
133 PRK10744 pstB phosphate transp 100.0 3.8E-41 8.3E-46 359.3 27.2 221 45-287 11-243 (260)
134 PRK10584 putative ABC transpor 100.0 5E-41 1.1E-45 351.3 27.5 214 47-280 6-227 (228)
135 cd03235 ABC_Metallic_Cations A 100.0 9.4E-42 2E-46 353.1 21.6 210 49-281 1-213 (213)
136 PRK14241 phosphate transporter 100.0 4.5E-41 9.7E-46 358.4 27.3 220 47-287 4-241 (258)
137 COG4181 Predicted ABC-type tra 100.0 5.3E-42 1.1E-46 328.0 17.9 213 47-279 6-226 (228)
138 TIGR03410 urea_trans_UrtE urea 100.0 2E-41 4.4E-46 354.8 24.0 213 48-286 1-219 (230)
139 PRK10575 iron-hydroxamate tran 100.0 2.7E-41 5.8E-46 361.5 25.3 222 46-287 10-236 (265)
140 PRK13633 cobalt transporter AT 100.0 4.2E-41 9.2E-46 362.7 27.0 223 47-288 4-233 (280)
141 PRK13648 cbiO cobalt transport 100.0 7E-41 1.5E-45 359.1 28.5 220 46-287 6-230 (269)
142 PRK13639 cbiO cobalt transport 100.0 5.3E-41 1.1E-45 361.1 27.7 217 48-287 2-225 (275)
143 PRK13632 cbiO cobalt transport 100.0 4.2E-41 9.1E-46 361.1 26.5 220 46-287 6-230 (271)
144 PRK14269 phosphate ABC transpo 100.0 4.9E-41 1.1E-45 355.6 26.7 224 47-287 2-229 (246)
145 PRK13640 cbiO cobalt transport 100.0 4.5E-41 9.9E-46 362.8 26.9 222 47-288 5-232 (282)
146 cd03298 ABC_ThiQ_thiamine_tran 100.0 3.6E-41 7.8E-46 348.3 24.8 209 48-281 1-211 (211)
147 COG1123 ATPase components of v 100.0 3E-41 6.6E-46 380.4 26.1 230 47-290 5-246 (539)
148 PRK14256 phosphate ABC transpo 100.0 8.1E-41 1.8E-45 355.2 27.9 224 47-287 4-235 (252)
149 TIGR03740 galliderm_ABC gallid 100.0 6.5E-41 1.4E-45 349.4 26.6 209 48-284 1-209 (223)
150 PRK10253 iron-enterobactin tra 100.0 3.8E-41 8.2E-46 360.3 25.3 222 46-287 6-232 (265)
151 TIGR03873 F420-0_ABC_ATP propo 100.0 4.2E-41 9.2E-46 358.2 25.2 219 48-286 2-224 (256)
152 KOG0058 Peptide exporter, ABC 100.0 4.2E-42 9.2E-47 392.0 17.9 221 45-288 463-691 (716)
153 PRK14239 phosphate transporter 100.0 1.1E-40 2.4E-45 354.0 27.6 223 47-287 5-235 (252)
154 TIGR01277 thiQ thiamine ABC tr 100.0 9.3E-41 2E-45 345.8 26.4 210 48-282 1-212 (213)
155 PRK14274 phosphate ABC transpo 100.0 9.8E-41 2.1E-45 356.0 27.1 221 45-287 10-242 (259)
156 PRK14250 phosphate ABC transpo 100.0 5.3E-41 1.1E-45 354.3 24.5 213 47-287 3-220 (241)
157 TIGR02142 modC_ABC molybdenum 100.0 7.3E-41 1.6E-45 372.0 26.7 210 52-288 4-221 (354)
158 PRK11144 modC molybdate transp 100.0 7.3E-41 1.6E-45 371.6 26.6 209 48-288 2-218 (352)
159 PRK14270 phosphate ABC transpo 100.0 1.3E-40 2.7E-45 353.5 27.2 219 47-287 4-234 (251)
160 PRK13645 cbiO cobalt transport 100.0 9.2E-41 2E-45 361.8 26.7 222 47-287 6-239 (289)
161 PRK14259 phosphate ABC transpo 100.0 8.4E-41 1.8E-45 358.4 25.9 221 44-288 10-253 (269)
162 PRK10771 thiQ thiamine transpo 100.0 9E-41 2E-45 350.5 25.4 215 48-287 2-218 (232)
163 cd03300 ABC_PotA_N PotA is an 100.0 1.4E-40 3.1E-45 349.0 26.9 217 48-287 1-219 (232)
164 PRK14237 phosphate transporter 100.0 1.7E-40 3.7E-45 355.6 27.9 224 46-287 19-250 (267)
165 TIGR00968 3a0106s01 sulfate AB 100.0 1.4E-40 3E-45 350.2 26.7 217 48-287 1-219 (237)
166 PRK15112 antimicrobial peptide 100.0 1.2E-40 2.7E-45 356.8 26.6 228 47-287 4-238 (267)
167 cd03299 ABC_ModC_like Archeal 100.0 1.7E-40 3.6E-45 349.2 27.1 216 48-287 1-218 (235)
168 COG4525 TauB ABC-type taurine 100.0 8.1E-41 1.8E-45 326.1 22.7 215 47-284 3-220 (259)
169 COG4559 ABC-type hemin transpo 100.0 2.5E-41 5.4E-46 334.2 19.3 219 48-288 2-230 (259)
170 PRK14240 phosphate transporter 100.0 1.9E-40 4.2E-45 351.8 27.7 219 47-287 3-233 (250)
171 PRK14272 phosphate ABC transpo 100.0 2.4E-40 5.2E-45 351.4 27.5 220 47-287 4-235 (252)
172 cd03267 ABC_NatA_like Similar 100.0 1.6E-40 3.5E-45 349.5 25.5 222 49-281 2-236 (236)
173 PRK14262 phosphate ABC transpo 100.0 2.9E-40 6.2E-45 350.5 27.6 223 47-287 3-233 (250)
174 PRK14253 phosphate ABC transpo 100.0 2.1E-40 4.6E-45 351.2 26.4 222 47-286 3-231 (249)
175 PRK13642 cbiO cobalt transport 100.0 2.2E-40 4.7E-45 356.7 26.8 220 47-287 4-228 (277)
176 COG1123 ATPase components of v 100.0 1E-40 2.2E-45 376.2 24.9 234 45-288 278-519 (539)
177 PRK11701 phnK phosphonate C-P 100.0 3.4E-40 7.4E-45 351.6 27.7 219 47-287 6-240 (258)
178 cd03233 ABC_PDR_domain1 The pl 100.0 2.2E-40 4.8E-45 340.3 25.3 196 47-281 3-202 (202)
179 PRK10762 D-ribose transporter 100.0 1.7E-40 3.6E-45 386.2 27.3 220 47-286 4-228 (501)
180 PRK14248 phosphate ABC transpo 100.0 4.1E-40 9E-45 352.9 28.1 220 46-287 20-251 (268)
181 PRK13547 hmuV hemin importer A 100.0 1.4E-40 3E-45 356.9 24.4 222 48-287 2-243 (272)
182 PRK14271 phosphate ABC transpo 100.0 3.7E-40 7.9E-45 354.6 27.6 224 46-287 20-250 (276)
183 PRK14244 phosphate ABC transpo 100.0 3.7E-40 8E-45 349.9 27.2 224 47-287 5-236 (251)
184 PRK14249 phosphate ABC transpo 100.0 4.8E-40 1E-44 349.0 27.7 223 47-287 4-234 (251)
185 COG4598 HisP ABC-type histidin 100.0 1.2E-41 2.6E-46 327.6 13.8 219 47-287 6-240 (256)
186 PRK09700 D-allose transporter 100.0 2.1E-40 4.4E-45 386.4 27.0 221 47-287 5-233 (510)
187 PRK14261 phosphate ABC transpo 100.0 5.6E-40 1.2E-44 348.9 27.5 223 47-287 6-236 (253)
188 PRK10418 nikD nickel transport 100.0 4.5E-40 9.8E-45 349.9 26.6 217 47-287 4-229 (254)
189 cd03297 ABC_ModC_molybdenum_tr 100.0 3.4E-40 7.4E-45 341.8 24.9 205 48-281 2-214 (214)
190 CHL00131 ycf16 sulfate ABC tra 100.0 1.1E-39 2.3E-44 346.5 29.0 222 47-285 7-238 (252)
191 PRK15439 autoinducer 2 ABC tra 100.0 3.5E-40 7.5E-45 384.1 27.7 214 47-287 11-228 (510)
192 PRK14260 phosphate ABC transpo 100.0 5.3E-40 1.1E-44 350.4 26.7 219 47-287 7-242 (259)
193 PRK14258 phosphate ABC transpo 100.0 6.7E-40 1.5E-44 349.9 27.5 225 47-288 7-245 (261)
194 PRK14251 phosphate ABC transpo 100.0 6.6E-40 1.4E-44 347.9 27.3 219 47-287 4-234 (251)
195 TIGR01184 ntrCD nitrate transp 100.0 3E-40 6.6E-45 346.1 24.4 201 75-286 1-202 (230)
196 PRK14275 phosphate ABC transpo 100.0 6.8E-40 1.5E-44 354.3 27.3 221 45-287 37-269 (286)
197 cd03232 ABC_PDR_domain2 The pl 100.0 5.4E-40 1.2E-44 334.8 24.9 189 47-281 3-192 (192)
198 PRK14236 phosphate transporter 100.0 1E-39 2.2E-44 350.6 28.4 224 46-287 24-255 (272)
199 COG2274 SunT ABC-type bacterio 100.0 3.9E-41 8.5E-46 398.0 18.8 220 46-289 470-697 (709)
200 TIGR02633 xylG D-xylose ABC tr 100.0 5E-40 1.1E-44 382.3 27.7 221 48-286 2-228 (500)
201 PRK14257 phosphate ABC transpo 100.0 1E-39 2.3E-44 358.5 28.2 226 46-288 79-313 (329)
202 PRK14255 phosphate ABC transpo 100.0 1.3E-39 2.8E-44 345.9 27.5 219 47-287 5-235 (252)
203 PRK15056 manganese/iron transp 100.0 7.1E-40 1.5E-44 351.8 25.4 223 44-286 3-228 (272)
204 PRK14238 phosphate transporter 100.0 1.2E-39 2.6E-44 349.9 27.0 219 47-287 24-254 (271)
205 PRK14265 phosphate ABC transpo 100.0 1.2E-39 2.5E-44 350.4 27.0 220 44-287 17-257 (274)
206 PRK14254 phosphate ABC transpo 100.0 1.3E-39 2.9E-44 351.7 27.4 218 45-286 37-267 (285)
207 TIGR02982 heterocyst_DevA ABC 100.0 1.1E-39 2.5E-44 339.4 25.7 211 48-277 2-219 (220)
208 TIGR03608 L_ocin_972_ABC putat 100.0 6.1E-40 1.3E-44 337.6 23.1 199 50-272 1-206 (206)
209 PRK10419 nikE nickel transport 100.0 1.7E-39 3.6E-44 348.2 27.0 229 47-288 3-241 (268)
210 PRK14243 phosphate transporter 100.0 1.3E-39 2.7E-44 348.4 25.6 221 47-287 10-247 (264)
211 cd03252 ABCC_Hemolysin The ABC 100.0 2.8E-40 6E-45 347.8 20.2 215 48-288 1-225 (237)
212 TIGR02770 nickel_nikD nickel i 100.0 9.6E-40 2.1E-44 342.3 24.1 205 74-287 1-214 (230)
213 TIGR02323 CP_lyasePhnK phospho 100.0 1.9E-39 4E-44 344.9 26.4 219 47-287 3-237 (253)
214 cd03213 ABCG_EPDR ABCG transpo 100.0 1.8E-39 3.9E-44 331.5 25.2 192 47-281 3-194 (194)
215 PRK13543 cytochrome c biogenes 100.0 1.5E-39 3.3E-44 337.1 24.9 204 45-274 9-212 (214)
216 PRK14263 phosphate ABC transpo 100.0 2.8E-39 6.1E-44 345.1 27.3 222 46-287 7-244 (261)
217 KOG0057 Mitochondrial Fe/S clu 100.0 2.5E-40 5.4E-45 365.7 19.5 219 42-288 346-574 (591)
218 PRK14266 phosphate ABC transpo 100.0 2.6E-39 5.6E-44 343.2 26.5 223 47-287 3-233 (250)
219 PRK15134 microcin C ABC transp 100.0 2.3E-39 4.9E-44 379.1 27.7 225 47-287 5-245 (529)
220 PRK10261 glutathione transport 100.0 2.6E-39 5.7E-44 384.4 28.6 231 46-287 312-552 (623)
221 COG4988 CydD ABC-type transpor 100.0 1.2E-39 2.5E-44 366.0 23.5 217 45-288 318-543 (559)
222 PRK11288 araG L-arabinose tran 100.0 2.8E-39 6E-44 376.0 27.7 217 47-283 4-224 (501)
223 PRK14252 phosphate ABC transpo 100.0 4.3E-39 9.4E-44 344.5 26.8 221 44-287 13-248 (265)
224 TIGR03269 met_CoM_red_A2 methy 100.0 2.3E-39 5E-44 378.4 26.8 221 48-289 1-259 (520)
225 cd03251 ABCC_MsbA MsbA is an e 100.0 6.5E-40 1.4E-44 344.2 20.0 215 48-288 1-225 (234)
226 PRK09580 sufC cysteine desulfu 100.0 4.2E-39 9E-44 341.0 26.3 222 48-286 2-233 (248)
227 PRK03695 vitamin B12-transport 100.0 1.2E-39 2.6E-44 345.4 21.9 200 74-286 11-220 (248)
228 PRK10982 galactose/methyl gala 100.0 1.8E-39 3.9E-44 376.7 25.4 217 50-286 1-221 (491)
229 TIGR01257 rim_protein retinal- 100.0 2.1E-39 4.5E-44 412.7 28.2 226 45-291 1935-2162(2272)
230 PRK14246 phosphate ABC transpo 100.0 4.2E-39 9.1E-44 342.9 26.1 218 47-287 10-240 (257)
231 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 7.1E-40 1.5E-44 344.9 19.9 217 48-289 1-227 (238)
232 COG4604 CeuD ABC-type enteroch 100.0 7E-41 1.5E-45 327.2 11.1 220 48-288 2-225 (252)
233 cd03245 ABCC_bacteriocin_expor 100.0 1.4E-39 3E-44 338.5 21.6 210 47-281 2-220 (220)
234 PRK11174 cysteine/glutathione 100.0 8.7E-40 1.9E-44 387.6 22.4 214 47-288 349-572 (588)
235 PRK10261 glutathione transport 100.0 2.8E-39 6E-44 384.3 26.5 223 47-287 12-257 (623)
236 PRK11176 lipid transporter ATP 100.0 1.2E-39 2.7E-44 385.9 22.7 217 47-288 341-567 (582)
237 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.5E-39 3.2E-44 392.0 23.6 213 47-288 451-673 (686)
238 COG4161 ArtP ABC-type arginine 100.0 1.4E-39 2.9E-44 308.2 18.1 216 47-284 2-226 (242)
239 PRK10247 putative ABC transpor 100.0 3.9E-39 8.5E-44 336.6 23.5 209 47-282 7-221 (225)
240 PRK14264 phosphate ABC transpo 100.0 1.1E-38 2.3E-43 348.0 27.8 225 47-287 45-288 (305)
241 KOG0055 Multidrug/pheromone ex 100.0 3.6E-40 7.8E-45 395.1 17.7 224 45-289 348-577 (1228)
242 PRK13538 cytochrome c biogenes 100.0 5.6E-39 1.2E-43 330.4 24.2 199 48-272 2-202 (204)
243 PRK15134 microcin C ABC transp 100.0 4.2E-39 9.2E-44 376.8 25.6 231 46-287 274-514 (529)
244 cd03254 ABCC_Glucan_exporter_l 100.0 1.8E-39 3.9E-44 339.8 19.9 215 47-287 2-225 (229)
245 COG1129 MglA ABC-type sugar tr 100.0 6.5E-39 1.4E-43 359.4 25.2 218 45-282 6-228 (500)
246 COG4987 CydC ABC-type transpor 100.0 4.6E-40 1E-44 363.4 15.6 216 47-288 336-561 (573)
247 PRK13549 xylose transporter AT 100.0 5.4E-39 1.2E-43 374.0 25.0 225 46-286 258-492 (506)
248 cd03217 ABC_FeS_Assembly ABC-t 100.0 9.7E-39 2.1E-43 327.7 23.6 190 48-290 1-195 (200)
249 cd03231 ABC_CcmA_heme_exporter 100.0 8.3E-39 1.8E-43 328.4 23.0 196 48-272 1-198 (201)
250 cd03289 ABCC_CFTR2 The CFTR su 100.0 4.4E-39 9.5E-44 345.1 21.8 215 47-288 2-225 (275)
251 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 7.9E-39 1.7E-43 334.1 23.1 202 48-281 23-224 (224)
252 TIGR01257 rim_protein retinal- 100.0 9.8E-39 2.1E-43 406.5 28.6 223 46-290 927-1151(2272)
253 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.1E-39 4.5E-44 392.2 21.5 215 46-288 476-700 (710)
254 cd03230 ABC_DR_subfamily_A Thi 100.0 9.1E-39 2E-43 320.4 22.3 171 48-277 1-173 (173)
255 COG1132 MdlB ABC-type multidru 100.0 2.4E-39 5.2E-44 382.1 21.1 219 46-289 327-553 (567)
256 PRK10790 putative multidrug tr 100.0 6.9E-39 1.5E-43 380.2 25.1 215 46-288 339-563 (592)
257 COG4172 ABC-type uncharacteriz 100.0 7.7E-39 1.7E-43 341.2 22.6 234 45-288 274-516 (534)
258 TIGR03269 met_CoM_red_A2 methy 100.0 1.4E-38 3E-43 371.8 26.3 224 46-288 278-517 (520)
259 PRK11160 cysteine/glutathione 100.0 6.4E-39 1.4E-43 378.5 23.1 217 46-288 337-562 (574)
260 cd03253 ABCC_ATM1_transporter 100.0 5.8E-39 1.2E-43 337.4 20.1 213 48-287 1-223 (236)
261 PRK09544 znuC high-affinity zi 100.0 1.9E-38 4.2E-43 336.6 24.0 202 47-287 4-208 (251)
262 PRK09700 D-allose transporter 100.0 1.2E-38 2.6E-43 371.5 24.6 217 46-284 264-494 (510)
263 PRK13546 teichoic acids export 100.0 6.2E-38 1.3E-42 334.8 27.8 221 47-288 4-232 (264)
264 PRK13539 cytochrome c biogenes 100.0 1.9E-38 4.2E-43 327.1 22.9 199 47-274 2-200 (207)
265 TIGR00958 3a01208 Conjugate Tr 100.0 6.1E-39 1.3E-43 387.1 21.5 216 46-288 477-702 (711)
266 TIGR02324 CP_lyasePhnL phospho 100.0 3.7E-38 8E-43 328.8 24.5 210 48-273 2-223 (224)
267 TIGR02633 xylG D-xylose ABC tr 100.0 2E-38 4.3E-43 368.9 24.9 224 46-285 256-489 (500)
268 TIGR03375 type_I_sec_LssB type 100.0 8.8E-39 1.9E-43 385.7 22.7 217 47-289 463-689 (694)
269 TIGR01189 ccmA heme ABC export 100.0 3.7E-38 7.9E-43 322.8 23.2 195 48-271 1-197 (198)
270 cd03244 ABCC_MRP_domain2 Domai 100.0 2.1E-38 4.6E-43 329.9 21.5 209 47-282 2-220 (221)
271 cd03229 ABC_Class3 This class 100.0 2.4E-38 5.2E-43 318.8 21.2 172 48-276 1-178 (178)
272 PRK13545 tagH teichoic acids e 100.0 8.6E-38 1.9E-42 353.8 27.9 216 45-290 19-234 (549)
273 cd03215 ABC_Carb_Monos_II This 100.0 3.8E-38 8.2E-43 318.5 22.3 172 47-277 4-182 (182)
274 cd03248 ABCC_TAP TAP, the Tran 100.0 9.8E-39 2.1E-43 333.6 18.5 213 45-277 9-226 (226)
275 TIGR01193 bacteriocin_ABC ABC- 100.0 9.7E-39 2.1E-43 386.2 21.2 215 47-288 473-697 (708)
276 COG0396 sufC Cysteine desulfur 100.0 9.4E-38 2E-42 313.6 23.7 233 47-297 3-242 (251)
277 PRK10938 putative molybdenum t 100.0 2.3E-38 4.9E-43 367.5 22.3 210 47-287 3-223 (490)
278 COG4148 ModC ABC-type molybdat 100.0 4.4E-39 9.5E-44 329.5 13.8 196 76-288 15-218 (352)
279 PRK13657 cyclic beta-1,2-gluca 100.0 3.4E-38 7.3E-43 373.9 23.2 214 47-287 334-557 (588)
280 cd03246 ABCC_Protease_Secretio 100.0 5.5E-38 1.2E-42 314.7 20.9 170 48-277 1-173 (173)
281 PRK10762 D-ribose transporter 100.0 7.2E-38 1.6E-42 364.1 25.0 216 46-286 256-482 (501)
282 cd03288 ABCC_SUR2 The SUR doma 100.0 7.1E-38 1.5E-42 333.6 22.4 217 45-288 17-243 (257)
283 PRK13540 cytochrome c biogenes 100.0 8.6E-38 1.9E-42 320.6 22.2 193 48-269 2-196 (200)
284 KOG0055 Multidrug/pheromone ex 100.0 2.9E-38 6.2E-43 378.9 21.4 222 46-288 986-1213(1228)
285 TIGR01842 type_I_sec_PrtD type 100.0 4.2E-38 9.1E-43 369.7 22.4 219 46-287 315-541 (544)
286 TIGR01166 cbiO cobalt transpor 100.0 8.7E-38 1.9E-42 317.8 21.7 177 72-259 5-188 (190)
287 TIGR02203 MsbA_lipidA lipid A 100.0 4.2E-38 9.2E-43 372.0 22.1 216 47-287 330-555 (571)
288 cd03247 ABCC_cytochrome_bd The 100.0 8.2E-38 1.8E-42 314.9 20.9 176 48-281 1-178 (178)
289 KOG0056 Heavy metal exporter H 100.0 1.4E-38 2.9E-43 344.1 15.3 226 40-288 530-761 (790)
290 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.9E-37 4.2E-42 319.6 23.3 199 47-283 6-207 (207)
291 COG3845 ABC-type uncharacteriz 100.0 1.7E-37 3.7E-42 341.0 23.4 216 47-282 4-223 (501)
292 PRK11288 araG L-arabinose tran 100.0 1.1E-37 2.3E-42 362.7 23.2 216 47-286 257-483 (501)
293 TIGR01846 type_I_sec_HlyB type 100.0 7.4E-38 1.6E-42 377.6 21.9 217 46-288 454-680 (694)
294 TIGR03771 anch_rpt_ABC anchore 100.0 1.8E-37 3.9E-42 323.6 21.6 197 80-287 1-200 (223)
295 PRK15439 autoinducer 2 ABC tra 100.0 2E-37 4.3E-42 360.9 24.3 216 47-287 268-491 (510)
296 cd03214 ABC_Iron-Siderophores_ 100.0 1.2E-37 2.6E-42 314.3 18.6 176 49-281 1-180 (180)
297 PTZ00265 multidrug resistance 100.0 5.1E-38 1.1E-42 400.1 19.8 220 47-288 1165-1452(1466)
298 TIGR02204 MsbA_rel ABC transpo 100.0 1.6E-37 3.5E-42 367.5 22.4 217 46-287 336-562 (576)
299 COG4172 ABC-type uncharacteriz 100.0 3.9E-37 8.5E-42 328.1 22.3 232 44-288 3-247 (534)
300 PRK10789 putative multidrug tr 100.0 2.3E-37 5E-42 365.1 22.5 216 47-288 313-538 (569)
301 TIGR01187 potA spermidine/putr 100.0 3.8E-37 8.3E-42 338.4 22.6 188 90-288 1-190 (325)
302 cd03250 ABCC_MRP_domain1 Domai 100.0 4.6E-37 9.9E-42 316.1 21.0 196 48-276 1-204 (204)
303 TIGR01192 chvA glucan exporter 100.0 6.7E-37 1.4E-41 362.0 25.2 215 47-288 334-558 (585)
304 cd03216 ABC_Carb_Monos_I This 100.0 1.6E-36 3.6E-41 301.1 22.1 158 48-279 1-162 (163)
305 COG4618 ArpD ABC-type protease 100.0 2.4E-37 5.2E-42 338.9 17.6 224 45-291 332-563 (580)
306 COG4619 ABC-type uncharacteriz 100.0 9.7E-38 2.1E-42 297.9 12.0 193 71-277 15-212 (223)
307 PRK10535 macrolide transporter 100.0 3.8E-36 8.3E-41 358.7 28.7 221 47-287 4-231 (648)
308 cd03228 ABCC_MRP_Like The MRP 100.0 1E-36 2.2E-41 305.0 19.9 168 48-276 1-171 (171)
309 cd03290 ABCC_SUR1_N The SUR do 100.0 1.9E-36 4.1E-41 314.7 22.5 201 49-276 2-218 (218)
310 PRK13541 cytochrome c biogenes 100.0 2.5E-36 5.4E-41 308.6 22.3 191 48-269 2-192 (195)
311 COG4674 Uncharacterized ABC-ty 100.0 5.7E-37 1.2E-41 299.4 15.4 221 46-287 4-234 (249)
312 PRK10982 galactose/methyl gala 100.0 3E-36 6.4E-41 349.9 23.4 217 46-284 249-476 (491)
313 PLN03232 ABC transporter C fam 100.0 1.8E-36 3.9E-41 389.1 23.6 215 47-288 1234-1458(1495)
314 PRK15064 ABC transporter ATP-b 100.0 4.9E-36 1.1E-40 351.1 25.3 209 48-287 2-241 (530)
315 PRK11819 putative ABC transpor 100.0 5.2E-36 1.1E-40 352.4 25.2 211 46-287 5-249 (556)
316 PLN03130 ABC transporter C fam 100.0 2.4E-36 5.1E-41 388.3 24.0 216 46-288 1236-1461(1622)
317 TIGR02868 CydC thiol reductant 100.0 1.1E-36 2.3E-41 356.9 19.0 188 46-258 333-529 (529)
318 COG4608 AppF ABC-type oligopep 100.0 3.5E-36 7.5E-41 312.2 20.2 194 47-288 4-199 (268)
319 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.1E-35 2.5E-40 319.9 24.7 202 45-287 37-246 (282)
320 COG4586 ABC-type uncharacteriz 100.0 9.6E-37 2.1E-41 311.9 15.2 234 47-291 3-249 (325)
321 PRK10938 putative molybdenum t 100.0 3.5E-36 7.6E-41 349.2 22.0 217 46-282 259-486 (490)
322 cd03223 ABCD_peroxisomal_ALDP 100.0 8.5E-36 1.8E-40 296.9 21.5 163 48-275 1-163 (166)
323 COG1119 ModF ABC-type molybden 100.0 2.5E-36 5.5E-41 306.8 17.6 219 44-282 28-256 (257)
324 TIGR02857 CydD thiol reductant 100.0 2.6E-36 5.7E-41 353.5 20.3 200 47-272 320-529 (529)
325 PRK15064 ABC transporter ATP-b 100.0 9.2E-36 2E-40 348.8 23.8 203 46-287 318-524 (530)
326 PRK10522 multidrug transporter 100.0 1E-35 2.2E-40 349.6 24.0 205 47-280 322-530 (547)
327 PTZ00243 ABC transporter; Prov 100.0 8.2E-36 1.8E-40 382.7 24.0 216 46-288 1307-1533(1560)
328 PRK15177 Vi polysaccharide exp 100.0 1.6E-35 3.5E-40 306.7 21.7 194 74-292 2-196 (213)
329 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.7E-35 3.7E-40 347.9 24.3 211 47-288 4-248 (552)
330 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.2E-35 4.7E-40 312.1 22.4 179 74-276 9-193 (246)
331 TIGR00957 MRP_assoc_pro multi 100.0 1.1E-35 2.3E-40 382.4 23.8 216 46-288 1283-1508(1522)
332 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.8E-35 3.9E-40 347.9 23.6 211 46-280 336-551 (555)
333 PTZ00265 multidrug resistance 100.0 1.7E-35 3.7E-40 377.1 23.1 214 47-275 382-655 (1466)
334 COG1101 PhnK ABC-type uncharac 100.0 3.2E-35 6.9E-40 291.5 17.8 219 48-281 2-231 (263)
335 TIGR01271 CFTR_protein cystic 100.0 5.5E-35 1.2E-39 374.8 25.2 215 46-288 1216-1440(1490)
336 PRK11819 putative ABC transpor 100.0 9.4E-35 2E-39 341.8 24.3 204 46-285 323-530 (556)
337 PRK13409 putative ATPase RIL; 100.0 1E-34 2.3E-39 341.3 24.2 198 46-283 339-537 (590)
338 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.4E-34 3.1E-39 340.1 24.0 202 46-283 321-526 (552)
339 cd03236 ABC_RNaseL_inhibitor_d 100.0 8.1E-35 1.7E-39 309.2 18.8 200 52-281 5-220 (255)
340 COG4167 SapF ABC-type antimicr 100.0 1.2E-34 2.6E-39 279.9 17.2 229 47-288 4-239 (267)
341 PRK10636 putative ABC transpor 100.0 5.4E-34 1.2E-38 339.4 24.7 201 46-286 311-515 (638)
342 COG5265 ATM1 ABC-type transpor 100.0 4.4E-35 9.5E-40 314.8 12.4 220 45-289 260-487 (497)
343 PRK11147 ABC transporter ATPas 100.0 1.1E-33 2.3E-38 337.4 24.3 199 46-280 318-519 (635)
344 COG1134 TagH ABC-type polysacc 100.0 2.1E-33 4.6E-38 286.0 22.5 226 47-292 3-240 (249)
345 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.8E-33 3.8E-38 273.7 20.1 144 48-276 1-144 (144)
346 PRK10636 putative ABC transpor 100.0 2.2E-33 4.8E-38 334.2 23.5 207 48-286 2-234 (638)
347 PLN03073 ABC transporter F fam 100.0 4.6E-33 1E-37 333.0 25.9 206 46-288 507-714 (718)
348 KOG0059 Lipid exporter ABCA1 a 100.0 9.7E-34 2.1E-38 347.1 20.2 226 44-291 561-790 (885)
349 cd03222 ABC_RNaseL_inhibitor T 100.0 2.8E-33 6.1E-38 280.7 19.6 155 51-286 4-161 (177)
350 PLN03232 ABC transporter C fam 100.0 2.8E-33 6E-38 359.7 24.1 207 47-288 614-828 (1495)
351 cd03238 ABC_UvrA The excision 100.0 5.6E-33 1.2E-37 278.3 19.8 156 72-277 8-166 (176)
352 COG4136 ABC-type uncharacteriz 100.0 2.2E-33 4.9E-38 263.3 15.4 193 47-260 2-197 (213)
353 TIGR00954 3a01203 Peroxysomal 100.0 4.1E-33 8.8E-38 333.1 21.9 199 47-274 451-653 (659)
354 PLN03130 ABC transporter C fam 100.0 3.7E-33 8.1E-38 358.8 22.8 206 47-288 614-828 (1622)
355 PRK11147 ABC transporter ATPas 100.0 1.4E-32 2.9E-37 327.9 23.9 207 47-286 3-241 (635)
356 COG4107 PhnK ABC-type phosphon 100.0 1.3E-32 2.9E-37 263.8 17.9 219 45-288 4-241 (258)
357 cd00267 ABC_ATPase ABC (ATP-bi 100.0 5.7E-32 1.2E-36 266.7 20.0 153 50-276 2-157 (157)
358 COG4133 CcmA ABC-type transpor 100.0 2.6E-32 5.6E-37 266.5 15.4 188 48-260 3-192 (209)
359 TIGR00957 MRP_assoc_pro multi 100.0 6E-32 1.3E-36 347.9 23.0 209 47-288 636-850 (1522)
360 PRK13409 putative ATPase RIL; 100.0 2.5E-32 5.4E-37 321.1 17.8 181 73-275 88-287 (590)
361 TIGR01271 CFTR_protein cystic 100.0 2.8E-31 6.1E-36 340.7 22.0 192 72-288 439-636 (1490)
362 PLN03073 ABC transporter F fam 100.0 2.4E-31 5.3E-36 318.2 17.1 219 46-286 176-429 (718)
363 COG0488 Uup ATPase components 100.0 8.8E-31 1.9E-35 301.1 20.2 206 47-284 3-236 (530)
364 KOG0054 Multidrug resistance-a 100.0 1.1E-30 2.3E-35 320.8 19.5 218 45-289 1136-1363(1381)
365 cd03270 ABC_UvrA_I The excisio 100.0 1.5E-29 3.2E-34 264.5 21.3 190 72-281 8-226 (226)
366 PTZ00243 ABC transporter; Prov 100.0 4.8E-30 1.1E-34 329.7 21.1 193 71-287 672-869 (1560)
367 KOG0054 Multidrug resistance-a 100.0 1.6E-29 3.4E-34 310.7 22.4 208 45-287 516-730 (1381)
368 COG4778 PhnL ABC-type phosphon 100.0 8.9E-30 1.9E-34 243.7 13.2 213 47-274 4-227 (235)
369 cd03271 ABC_UvrA_II The excisi 100.0 5.7E-29 1.2E-33 263.8 19.7 195 73-283 9-261 (261)
370 PF00005 ABC_tran: ABC transpo 100.0 1.6E-29 3.5E-34 242.9 12.6 134 75-227 1-137 (137)
371 COG0488 Uup ATPase components 100.0 5.7E-28 1.2E-32 277.9 20.4 203 44-286 318-523 (530)
372 COG4138 BtuD ABC-type cobalami 100.0 2.6E-29 5.7E-34 241.4 5.9 208 47-287 3-220 (248)
373 cd03278 ABC_SMC_barmotin Barmo 100.0 2.9E-28 6.2E-33 249.4 13.6 166 76-274 14-190 (197)
374 COG1129 MglA ABC-type sugar tr 100.0 3.7E-27 7.9E-32 265.0 23.0 217 45-285 261-487 (500)
375 PRK00635 excinuclease ABC subu 99.9 4.6E-25 1E-29 278.0 25.6 138 143-288 759-906 (1809)
376 cd03272 ABC_SMC3_euk Eukaryoti 99.9 6.4E-26 1.4E-30 239.5 13.9 186 72-273 15-234 (243)
377 cd03274 ABC_SMC4_euk Eukaryoti 99.9 2.6E-27 5.5E-32 245.1 2.0 177 72-274 17-204 (212)
378 cd03279 ABC_sbcCD SbcCD and ot 99.9 2.1E-25 4.6E-30 231.2 15.9 193 47-276 5-210 (213)
379 COG4170 SapD ABC-type antimicr 99.9 4.1E-26 8.9E-31 225.1 9.9 231 47-288 3-248 (330)
380 cd03273 ABC_SMC2_euk Eukaryoti 99.9 8.6E-26 1.9E-30 239.9 10.7 184 85-273 25-242 (251)
381 cd03240 ABC_Rad50 The catalyti 99.9 3.7E-25 8E-30 227.7 13.2 165 78-274 16-197 (204)
382 COG3845 ABC-type uncharacteriz 99.9 5E-24 1.1E-28 235.1 21.6 223 45-286 255-490 (501)
383 PRK00349 uvrA excinuclease ABC 99.9 6.8E-24 1.5E-28 258.0 24.4 126 147-288 792-927 (943)
384 COG4615 PvdE ABC-type sideroph 99.9 2.9E-25 6.4E-30 236.7 8.8 205 47-281 322-530 (546)
385 COG4178 ABC-type uncharacteriz 99.9 2.4E-24 5.3E-29 246.6 16.5 197 45-273 390-587 (604)
386 TIGR00630 uvra excinuclease AB 99.9 2.9E-23 6.2E-28 252.1 24.2 125 146-286 789-923 (924)
387 KOG0927 Predicted transporter 99.9 5.2E-24 1.1E-28 235.7 11.0 202 43-282 385-590 (614)
388 KOG0927 Predicted transporter 99.9 1.5E-23 3.3E-28 232.0 13.5 215 45-286 73-307 (614)
389 COG1245 Predicted ATPase, RNas 99.9 2.4E-22 5.2E-27 218.1 17.4 188 47-273 342-530 (591)
390 cd03276 ABC_SMC6_euk Eukaryoti 99.9 3.6E-22 7.9E-27 204.5 15.3 169 74-276 11-192 (198)
391 cd03275 ABC_SMC1_euk Eukaryoti 99.9 2.5E-22 5.4E-27 212.9 9.6 179 86-274 23-233 (247)
392 KOG0060 Long-chain acyl-CoA tr 99.9 6.6E-21 1.4E-25 212.6 17.1 204 46-274 432-641 (659)
393 KOG2355 Predicted ABC-type tra 99.9 9.4E-21 2E-25 187.0 16.1 211 46-287 12-236 (291)
394 KOG0066 eIF2-interacting prote 99.9 3.1E-21 6.7E-26 207.3 13.6 197 39-274 578-776 (807)
395 PF01061 ABC2_membrane: ABC-2 99.8 8E-23 1.7E-27 208.8 -0.0 207 525-733 1-210 (210)
396 KOG0062 ATPase component of AB 99.8 2.3E-21 5E-26 213.7 9.5 201 45-284 78-281 (582)
397 KOG0062 ATPase component of AB 99.8 6.7E-20 1.4E-24 202.3 15.1 202 42-279 357-559 (582)
398 cd03277 ABC_SMC5_euk Eukaryoti 99.8 1E-19 2.2E-24 188.5 14.4 80 196-276 124-211 (213)
399 cd03280 ABC_MutS2 MutS2 homolo 99.8 4.9E-20 1.1E-24 189.2 10.3 147 74-281 16-172 (200)
400 COG1245 Predicted ATPase, RNas 99.8 4.9E-20 1.1E-24 200.3 10.4 171 82-274 97-288 (591)
401 COG0178 UvrA Excinuclease ATPa 99.8 1.6E-18 3.5E-23 199.9 20.8 128 146-288 783-919 (935)
402 cd03283 ABC_MutS-like MutS-lik 99.8 2.8E-19 6E-24 183.3 10.2 138 73-264 15-153 (199)
403 COG2401 ABC-type ATPase fused 99.8 6.8E-19 1.5E-23 189.2 13.2 208 48-278 358-588 (593)
404 cd03239 ABC_SMC_head The struc 99.8 2.6E-18 5.6E-23 173.1 15.5 74 199-274 95-172 (178)
405 PRK00635 excinuclease ABC subu 99.8 9.5E-18 2E-22 212.5 21.1 200 74-288 1505-1796(1809)
406 KOG0064 Peroxisomal long-chain 99.8 1.5E-18 3.3E-23 191.1 11.9 183 48-260 482-671 (728)
407 cd03241 ABC_RecN RecN ATPase i 99.8 9.2E-18 2E-22 180.9 15.9 76 198-276 170-249 (276)
408 cd03285 ABC_MSH2_euk MutS2 hom 99.7 2.6E-18 5.7E-23 179.0 8.4 152 72-282 17-175 (222)
409 cd03227 ABC_Class2 ABC-type Cl 99.7 9.6E-18 2.1E-22 166.5 10.7 75 198-274 77-155 (162)
410 PRK00349 uvrA excinuclease ABC 99.7 5.3E-17 1.1E-21 198.2 15.0 136 144-287 434-584 (943)
411 KOG0066 eIF2-interacting prote 99.7 4.1E-18 8.9E-23 183.5 3.6 212 44-279 261-489 (807)
412 TIGR00630 uvra excinuclease AB 99.7 7.8E-17 1.7E-21 196.3 15.0 135 145-287 433-582 (924)
413 cd03243 ABC_MutS_homologs The 99.7 2E-17 4.4E-22 170.1 7.9 157 76-286 20-177 (202)
414 cd03242 ABC_RecF RecF is a rec 99.7 8.5E-16 1.8E-20 165.1 17.8 76 197-277 182-269 (270)
415 cd03282 ABC_MSH4_euk MutS4 hom 99.6 3E-16 6.5E-21 161.4 8.9 137 72-260 16-153 (204)
416 cd03284 ABC_MutS1 MutS1 homolo 99.6 5.6E-15 1.2E-19 153.5 11.0 158 73-287 19-180 (216)
417 KOG0063 RNAse L inhibitor, ABC 99.6 1.7E-14 3.7E-19 156.1 12.8 178 70-272 347-530 (592)
418 TIGR02858 spore_III_AA stage I 99.5 2.5E-14 5.3E-19 152.8 12.0 140 86-286 112-267 (270)
419 smart00534 MUTSac ATPase domai 99.5 2.3E-14 4.9E-19 145.5 5.0 77 198-277 61-139 (185)
420 TIGR01247 drrB daunorubicin re 99.4 8.3E-12 1.8E-16 131.3 21.8 196 533-731 1-204 (236)
421 PRK00064 recF recombination pr 99.4 1.7E-12 3.7E-17 145.1 17.0 77 197-277 272-359 (361)
422 cd03281 ABC_MSH5_euk MutS5 hom 99.4 2.6E-12 5.7E-17 133.3 12.5 132 74-260 18-156 (213)
423 TIGR01069 mutS2 MutS2 family p 99.4 6.4E-13 1.4E-17 160.7 8.4 133 77-261 313-448 (771)
424 PF02463 SMC_N: RecF/RecN/SMC 99.4 2.5E-12 5.5E-17 133.8 11.8 88 172-273 121-212 (220)
425 KOG0063 RNAse L inhibitor, ABC 99.4 1.9E-12 4.1E-17 140.6 9.4 172 83-274 98-288 (592)
426 cd00820 PEPCK_HprK Phosphoenol 99.3 1.2E-12 2.6E-17 119.7 6.4 73 73-156 3-78 (107)
427 TIGR03062 pip_yhgE_Cterm YhgE/ 99.3 3.2E-11 6.9E-16 124.4 16.3 149 615-814 57-206 (208)
428 TIGR00025 Mtu_efflux ABC trans 99.3 3.1E-10 6.8E-15 119.2 23.8 187 539-731 2-196 (232)
429 cd03287 ABC_MSH3_euk MutS3 hom 99.3 2.5E-11 5.4E-16 126.4 12.4 135 72-260 18-156 (222)
430 TIGR01291 nodJ ABC-2 type tran 99.3 1E-09 2.2E-14 116.9 24.4 194 527-731 7-216 (253)
431 PTZ00132 GTP-binding nuclear p 99.2 1.2E-11 2.7E-16 128.1 8.3 44 203-246 157-205 (215)
432 TIGR00634 recN DNA repair prot 99.2 2.2E-11 4.7E-16 144.0 9.7 77 197-276 439-519 (563)
433 PRK07721 fliI flagellum-specif 99.2 2.6E-10 5.6E-15 129.6 17.3 174 72-285 146-340 (438)
434 TIGR03861 phenyl_ABC_PedC alco 99.2 3.7E-09 8.1E-14 112.5 25.2 202 524-730 1-219 (253)
435 PRK00409 recombination and DNA 99.2 1.6E-11 3.4E-16 149.2 6.4 81 197-280 389-470 (782)
436 PRK10869 recombination and rep 99.2 5.7E-11 1.2E-15 139.5 10.2 77 197-276 429-509 (553)
437 TIGR00618 sbcc exonuclease Sbc 99.2 6.4E-11 1.4E-15 149.6 11.2 80 195-275 947-1036(1042)
438 PHA02562 46 endonuclease subun 99.2 5.3E-11 1.2E-15 141.0 9.2 78 196-277 466-555 (562)
439 PRK08533 flagellar accessory p 99.1 3.7E-10 8E-15 118.6 13.4 135 81-258 20-163 (230)
440 COG0178 UvrA Excinuclease ATPa 99.1 3.8E-10 8.3E-15 131.6 14.3 137 145-289 427-578 (935)
441 cd01128 rho_factor Transcripti 99.1 8E-12 1.7E-16 132.2 0.5 75 197-277 128-211 (249)
442 cd03286 ABC_MSH6_euk MutS6 hom 99.1 7.8E-11 1.7E-15 122.4 7.8 135 72-260 17-155 (218)
443 PF13304 AAA_21: AAA domain; P 99.1 2.1E-10 4.5E-15 119.3 9.2 63 197-259 235-300 (303)
444 cd01124 KaiC KaiC is a circadi 99.1 1.1E-09 2.3E-14 110.7 12.9 77 197-273 70-163 (187)
445 PRK13695 putative NTPase; Prov 99.1 7.1E-11 1.5E-15 118.6 4.1 77 198-280 78-156 (174)
446 TIGR02788 VirB11 P-type DNA tr 99.0 8.2E-10 1.8E-14 121.1 9.5 142 78-287 137-280 (308)
447 PRK15066 inner membrane transp 99.0 1.4E-07 3.1E-12 100.7 26.2 241 523-814 6-252 (257)
448 PRK10246 exonuclease subunit S 99.0 1.3E-09 2.7E-14 137.4 11.0 80 194-274 945-1032(1047)
449 PRK03918 chromosome segregatio 99.0 1E-09 2.2E-14 137.0 10.0 78 195-274 785-868 (880)
450 PRK13830 conjugal transfer pro 99.0 6.8E-09 1.5E-13 127.6 16.5 69 214-282 650-727 (818)
451 cd01120 RecA-like_NTPases RecA 98.9 2.8E-09 6.1E-14 104.1 9.2 62 199-260 68-139 (165)
452 PRK06793 fliI flagellum-specif 98.9 5.5E-09 1.2E-13 118.0 10.3 156 72-283 144-306 (432)
453 COG3910 Predicted ATPase [Gene 98.9 2.7E-08 5.8E-13 98.3 13.1 63 197-260 128-190 (233)
454 PRK01156 chromosome segregatio 98.9 6.7E-09 1.4E-13 129.8 10.8 77 195-273 798-883 (895)
455 TIGR00606 rad50 rad50. This fa 98.8 7.2E-09 1.6E-13 133.8 8.8 69 197-266 1198-1277(1311)
456 COG0842 ABC-type multidrug tra 98.8 7.4E-07 1.6E-11 94.9 22.4 167 602-817 116-285 (286)
457 PRK06067 flagellar accessory p 98.8 7.1E-08 1.5E-12 101.5 13.5 161 74-273 13-186 (234)
458 TIGR02168 SMC_prok_B chromosom 98.8 9.3E-09 2E-13 131.9 7.9 76 195-273 1086-1165(1179)
459 cd01131 PilT Pilus retraction 98.8 3.7E-08 8E-13 101.1 10.4 56 208-272 66-121 (198)
460 cd01125 repA Hexameric Replica 98.7 9E-08 2E-12 101.1 12.2 136 85-259 1-160 (239)
461 PRK06995 flhF flagellar biosyn 98.7 4.7E-08 1E-12 112.0 10.3 152 73-257 244-401 (484)
462 PRK02224 chromosome segregatio 98.7 4.4E-08 9.6E-13 122.4 9.3 78 196-275 779-869 (880)
463 TIGR02169 SMC_prok_A chromosom 98.6 4E-08 8.6E-13 126.2 8.4 76 196-274 1072-1151(1164)
464 smart00382 AAA ATPases associa 98.6 9.2E-07 2E-11 83.0 15.6 60 198-257 60-125 (148)
465 TIGR03238 dnd_assoc_3 dnd syst 98.6 2.3E-08 4.9E-13 112.9 5.2 52 72-127 19-71 (504)
466 TIGR01248 drrC daunorubicin re 98.5 2.1E-06 4.5E-11 84.4 13.6 128 599-729 14-146 (152)
467 PRK13891 conjugal transfer pro 98.4 1.3E-06 2.8E-11 108.1 13.8 52 209-260 680-732 (852)
468 TIGR02655 circ_KaiC circadian 98.4 1.1E-07 2.4E-12 110.6 3.2 167 74-273 9-190 (484)
469 TIGR00611 recf recF protein. A 98.4 3.7E-07 8E-12 102.3 7.0 60 198-260 275-343 (365)
470 cd01130 VirB11-like_ATPase Typ 98.4 6.9E-07 1.5E-11 90.8 8.3 83 74-158 14-98 (186)
471 PRK07196 fliI flagellum-specif 98.4 2.9E-07 6.4E-12 104.2 5.6 88 72-160 143-240 (434)
472 TIGR01420 pilT_fam pilus retra 98.4 1.1E-06 2.5E-11 97.8 10.1 56 208-272 187-242 (343)
473 PRK14079 recF recombination pr 98.4 6.1E-07 1.3E-11 100.2 7.9 75 198-280 263-346 (349)
474 PF06422 PDR_CDR: CDR ABC tran 98.4 8E-07 1.7E-11 81.4 7.0 47 772-818 30-77 (103)
475 TIGR03881 KaiC_arch_4 KaiC dom 98.4 1.3E-07 2.8E-12 99.1 1.7 46 74-122 8-56 (229)
476 COG0419 SbcC ATPase involved i 98.4 1.1E-06 2.3E-11 110.0 10.2 78 195-274 812-897 (908)
477 TIGR01026 fliI_yscN ATPase Fli 98.3 5.5E-06 1.2E-10 94.6 14.4 176 72-286 151-346 (440)
478 PRK05399 DNA mismatch repair p 98.3 9.1E-07 2E-11 109.2 8.2 137 73-268 596-738 (854)
479 cd02023 UMPK Uridine monophosp 98.3 6.2E-07 1.4E-11 91.8 4.9 113 87-231 1-113 (198)
480 PRK06002 fliI flagellum-specif 98.3 1.5E-06 3.2E-11 98.7 7.8 84 45-142 137-230 (450)
481 PRK09825 idnK D-gluconate kina 98.2 7.1E-07 1.5E-11 89.9 3.2 66 84-155 2-69 (176)
482 PLN03210 Resistant to P. syrin 98.2 5E-06 1.1E-10 106.7 10.4 146 77-272 199-348 (1153)
483 TIGR02680 conserved hypothetic 98.1 3.1E-06 6.8E-11 109.3 7.5 60 196-258 1245-1316(1353)
484 PRK13898 type IV secretion sys 98.1 4.7E-05 1E-09 94.2 17.3 49 212-260 638-687 (800)
485 cd01122 GP4d_helicase GP4d_hel 98.1 8.6E-05 1.9E-09 79.8 16.5 37 72-108 17-53 (271)
486 PRK13873 conjugal transfer ATP 98.0 6E-05 1.3E-09 93.4 14.9 47 214-260 633-680 (811)
487 PRK06315 type III secretion sy 98.0 1.3E-05 2.7E-10 91.3 8.0 110 72-184 152-277 (442)
488 PRK01889 GTPase RsgA; Reviewed 97.9 1.6E-05 3.5E-10 88.9 7.4 78 75-155 185-262 (356)
489 PF13558 SbcCD_C: Putative exo 97.9 1.9E-05 4.1E-10 70.6 6.3 47 197-243 31-90 (90)
490 PRK00454 engB GTP-binding prot 97.9 0.00012 2.5E-09 74.3 12.9 66 173-247 126-195 (196)
491 PF13555 AAA_29: P-loop contai 97.9 1.3E-05 2.8E-10 66.2 4.4 36 75-110 12-48 (62)
492 TIGR00152 dephospho-CoA kinase 97.9 8.7E-06 1.9E-10 82.8 4.3 72 202-275 61-133 (188)
493 TIGR03518 ABC_perm_GldF glidin 97.9 0.00067 1.4E-08 71.9 18.1 186 528-726 2-208 (240)
494 cd00009 AAA The AAA+ (ATPases 97.9 0.00012 2.5E-09 69.4 11.0 55 204-259 72-131 (151)
495 TIGR00767 rho transcription te 97.8 3.9E-05 8.5E-10 85.8 7.8 52 47-109 130-192 (415)
496 COG1682 TagG ABC-type polysacc 97.8 0.0051 1.1E-07 66.0 23.5 202 523-735 16-226 (263)
497 PRK10078 ribose 1,5-bisphospho 97.8 2.1E-05 4.5E-10 79.9 5.0 37 85-126 2-38 (186)
498 TIGR00235 udk uridine kinase. 97.8 8E-06 1.7E-10 84.4 1.8 28 83-110 4-31 (207)
499 TIGR02903 spore_lon_C ATP-depe 97.8 8.5E-05 1.8E-09 88.9 10.4 112 84-243 174-291 (615)
500 cd01876 YihA_EngB The YihA (En 97.8 3.3E-05 7.2E-10 75.2 5.8 64 172-244 100-169 (170)
No 1
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.1e-102 Score=914.73 Aligned_cols=585 Identities=39% Similarity=0.645 Sum_probs=504.6
Q ss_pred CCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCceEEEECC
Q 003437 44 PGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG-SLEGSVRIDG 122 (820)
Q Consensus 44 ~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~-~~~G~I~i~G 122 (820)
.+..+.|+|++++.+++.. ..+.+|+|||++++|||++||||||||||||||++|+|+...+ ..+|+|++||
T Consensus 22 ~~~~~~~~~~~~~~~~~~~-------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG 94 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK-------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNG 94 (613)
T ss_pred ccceeEEEEEEEEecCCCC-------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECC
Confidence 4556999999999765421 3467999999999999999999999999999999999998653 6899999999
Q ss_pred EeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 123 KPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 123 ~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
++.....+++.+|||.|||.++|++||+|+|.|.+.+|+|...++++++++|+++++++||.+++|+++|+...|++|||
T Consensus 95 ~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGG 174 (613)
T KOG0061|consen 95 RPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGG 174 (613)
T ss_pred ccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccc
Confidence 88877778899999999999999999999999999999998889999999999999999999999999999888999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||+||.+|+++|+||||||||||||+.++.++++.|+++|++|+|||+++|||+.+++++||++++|++|+++|+|+
T Consensus 175 ErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~ 254 (613)
T KOG0061|consen 175 ERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGS 254 (613)
T ss_pred hhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhccCCCCCCCCChHHHHHHHhhhccccccCCCCceecccCCCCCccccCCCCCCCCCCCCccccchhhcccc
Q 003437 283 PVALPAHLAGFGRTVPDGENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFPKIPRTPASRSKHAISLRSQ 362 (820)
Q Consensus 283 ~~~~~~~f~~~g~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (820)
++++.+||++.|++||+..||+||++|+++..+.. ....+
T Consensus 255 ~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~----~~~~~------------------------------------ 294 (613)
T KOG0061|consen 255 PRELLEFFSSLGFPCPELENPADFLLDLLSVDSGT----RELEE------------------------------------ 294 (613)
T ss_pred HHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCc----hhHHh------------------------------------
Confidence 99999999999999999999999999998642000 00000
Q ss_pred cccccCCCCCCCCCCCccccCCCCCCchHHHHHHHhhhhccccccccccccchhhhhhhhhcccchhccccccCCCCCCC
Q 003437 363 AFSFSTGNMTPGANSTQFDYYDDDDDDDEEFDKSLERKTAATPIINMQSGAYNNRLASQFYKDFSVWLYHGVVGTPRRRP 442 (820)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (820)
..+.+.... ....... ..+... .
T Consensus 295 --------------------------~~~~~~~~~--~~~~~~~-------~~~~~~-----~----------------- 317 (613)
T KOG0061|consen 295 --------------------------AVRIAKLIN--KFSQTDN-------LKKTLE-----A----------------- 317 (613)
T ss_pred --------------------------HHHHHHHhh--hccccch-------hhhhHH-----H-----------------
Confidence 000000000 0000000 000000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCccccCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCc
Q 003437 443 SWTPARTPGRTPAKTPISGARSFVSGEYYSTPQQNPSRLKTPVVFSTSTDPYAPSYEQELEDMEEKVLDEPDHGPKFANP 522 (820)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 522 (820)
. .. ...+ ..........+
T Consensus 318 ---~-----~~----~~~~--------------------------------------------------~~~~~~~~~~s 335 (613)
T KOG0061|consen 318 ---L-----EK----SLST--------------------------------------------------SKKVEIGTSPS 335 (613)
T ss_pred ---H-----hh----hccc--------------------------------------------------ccccccccCCc
Confidence 0 00 0000 00000011579
Q ss_pred HHHHHHHHHHhhHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH-hhhhcHHHHHH
Q 003437 523 WLREVAVLSWRTALNVIRTPELFLSREIVFAVMALILSSLFKNLSHHDFKTINRLLNFYIFAVCLVFF-SSNDAVPTFIQ 601 (820)
Q Consensus 523 ~~~Q~~~L~~R~~~~~~Rdp~~~~~r~~~~i~~~lliG~lf~~l~~~~~~~~~~~~g~~ff~~~~~~~-~~~~~i~~f~~ 601 (820)
||.|+++|++|.+++.+|||.++..|+++.+++|+++|++||+++. +..+++++.|++||.+.+..+ ..++.++.|++
T Consensus 336 ~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~-~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~ 414 (613)
T KOG0061|consen 336 WWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN-DAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQ 414 (613)
T ss_pred HHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHH
Confidence 9999999999999999999999999999999999999999999865 566777999999998887755 55678999999
Q ss_pred HhhHHHhHhcCCCCChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCCch---HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003437 602 ERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSS---LLNFWMILFASLITTNAYVMLVSALV 678 (820)
Q Consensus 602 eR~vf~RE~~~g~Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~---f~~f~l~l~l~~~~~~s~~~~i~a~~ 678 (820)
||++|.||+.+|+|+.++||+|++++++|+.++.+++|.+|+|||+|++++ |++|++++++..++++++++++++++
T Consensus 415 e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~ 494 (613)
T KOG0061|consen 415 ERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIV 494 (613)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999875 57777888899999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHhccceecCCCCCcceeehhccChhhHHHHHHHHhhcCC--CccccCCCCCCCCCCCccccc
Q 003437 679 PSYIAGYAVVIATTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTNEFKG--KECYNGAPGDLSPGPLGEVKL 756 (820)
Q Consensus 679 ps~~~a~~v~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~nef~~--~~c~~~~~~~~~p~p~~~~~~ 756 (820)
|+...|++++++++++|++|+||+++.++||.||+|++|+||++|+|||+++|||.+ ..|...
T Consensus 495 ~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~--------------- 559 (613)
T KOG0061|consen 495 PNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLS--------------- 559 (613)
T ss_pred cchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccC---------------
Confidence 999999999999999999999999999999999999999999999999999999996 245321
Q ss_pred cccccccccccCCCcccchHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 003437 757 SKLHNTTAALLRPDCTLIGEDIVYSMDIQIENIWFDILILLAWGVLYRLFFYLVLRFYSKNVRK 820 (820)
Q Consensus 757 ~~~~~~~~~~~~~~c~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~l~~l~L~~~~~~~r~ 820 (820)
....|..+|.++++.+++...++|.|+.++++++++||+++|++|+++.|++|+
T Consensus 560 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~~ 613 (613)
T KOG0061|consen 560 ----------GNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKRR 613 (613)
T ss_pred ----------cCCcccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 113577899999999999999999999999999999999999999999998874
No 2
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=4.5e-100 Score=903.00 Aligned_cols=575 Identities=31% Similarity=0.537 Sum_probs=484.4
Q ss_pred cccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCceEEEECCEeCCCccccceEEEEccCCCCCCCCCH
Q 003437 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG-SLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTV 149 (820)
Q Consensus 71 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~-~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV 149 (820)
++.+|+|+|+++++||+++|+|||||||||||++|+|+.+++ ..+|+|.+||.+++....++.+|||+|++.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 467999999999999999999999999999999999987543 2579999999998755567789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC-CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 003437 150 FETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEG-RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSG 228 (820)
Q Consensus 150 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsg 228 (820)
+|||.|++.++.+...++++++++++++++.+||.+++|+.+|++. .++|||||||||+||++|+.+|++|||||||+|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 9999999998877667778888899999999999999999999753 678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchhhhhhccCCCCCCCCChHHHHH
Q 003437 229 LDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFGRTVPDGENSLEYLL 308 (820)
Q Consensus 229 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~ad~~~ 308 (820)
||+.++..+++.|++++++|+|||+++|||+.++.++||++++|++|+++++|+++++.+||+++|++||+..||+||++
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~ 276 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYV 276 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHH
Confidence 99999999999999999889999999999987789999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccccCCCCceecccCCCCCccccCCCCCCCCCCCCccccchhhcccccccccCCCCCCCCCCCccccCCCCCC
Q 003437 309 DVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFPKIPRTPASRSKHAISLRSQAFSFSTGNMTPGANSTQFDYYDDDDD 388 (820)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (820)
++++....... . . .+
T Consensus 277 ~~~~~~~~~~~---------------~--~------------------------------------------------~~ 291 (617)
T TIGR00955 277 QVLAVIPGSEN---------------E--S------------------------------------------------RE 291 (617)
T ss_pred HHhhcCccccc---------------c--h------------------------------------------------HH
Confidence 98753211000 0 0 00
Q ss_pred chHHHHHHHhhhhccccccccccccchhhhhhhhhcccchhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 003437 389 DDEEFDKSLERKTAATPIINMQSGAYNNRLASQFYKDFSVWLYHGVVGTPRRRPSWTPARTPGRTPAKTPISGARSFVSG 468 (820)
Q Consensus 389 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (820)
..+++.+..+.+. ...+.. +....+. . ..+ ..
T Consensus 292 ~~~~~~~~~~~s~------------~~~~~~----~~~~~~~---------------~-~~~-------~~--------- 323 (617)
T TIGR00955 292 RIEKICDSFAVSD------------IGRDML----VNTNLWS---------------G-KAG-------GL--------- 323 (617)
T ss_pred HHHHHHHHHhcch------------hhHHHH----HHhhhhh---------------c-ccc-------cc---------
Confidence 0011111110000 000000 0000000 0 000 00
Q ss_pred ccCCCCCCCCCCCCCCccccCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCcHHHHHHHHHHhhHHHhhcChHHHHHH
Q 003437 469 EYYSTPQQNPSRLKTPVVFSTSTDPYAPSYEQELEDMEEKVLDEPDHGPKFANPWLREVAVLSWRTALNVIRTPELFLSR 548 (820)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rdp~~~~~r 548 (820)
.. . . ......++..+|++|+++|++|.+++.+|||.++.+|
T Consensus 324 -----~~------------~-------~---------------~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~ 364 (617)
T TIGR00955 324 -----VK------------D-------S---------------ENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVR 364 (617)
T ss_pred -----cc------------c-------c---------------ccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 00 0 0 0000234678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHh-hhhcHHHHHHHhhHHHhHhcCCCCChhHHHHHHHHH
Q 003437 549 EIVFAVMALILSSLFKNLSHHDFKTINRLLNFYIFAVCLVFFS-SNDAVPTFIQERFIFIRETSHNAYRASSYVVSSLLV 627 (820)
Q Consensus 549 ~~~~i~~~lliG~lf~~l~~~~~~~~~~~~g~~ff~~~~~~~~-~~~~i~~f~~eR~vf~RE~~~g~Y~~~aY~la~~l~ 627 (820)
+++.+++|+++|++||+++. +.++++++.|++||++++..|. ++..++.|+.||++|+||+.+|+|++++|++|++++
T Consensus 365 ~~~~i~~~li~G~~f~~~~~-~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~ 443 (617)
T TIGR00955 365 LIQTMMTAILIGLIYLGQGL-TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIA 443 (617)
T ss_pred HHHHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHH
Confidence 99999999999999999875 5788999999988888766665 567889999999999999999999999999999999
Q ss_pred HhhHHHHHHhHHhhhhhhccCCCch---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhccceec
Q 003437 628 YLPFFGIQGLTFAAITKLLLKLHSS---LLNFWMILFASLITTNAYVMLVSALVPSYIAGYAVVIATTALFFLTCGFFLK 704 (820)
Q Consensus 628 elP~~~~~~~if~~i~Y~m~Gl~~~---f~~f~l~l~l~~~~~~s~~~~i~a~~ps~~~a~~v~~~~~~~~~lf~Gf~i~ 704 (820)
|+|+.++.+++|++|+|||+||+++ |+.|+++++++.+++.++++++++++|+..+|..+++++++++++|+||+++
T Consensus 444 ~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~ 523 (617)
T TIGR00955 444 ELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFIN 523 (617)
T ss_pred HHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccC
Confidence 9999999999999999999999975 5677788888889999999999999999999999999999999999999999
Q ss_pred CCCCCcceeehhccChhhHHHHHHHHhhcCCCccccCCCCCCCCCCCccccccccccccccccCCCcccchHHHHHHcCC
Q 003437 705 RGHIPPYWRWLHYISAIKYPFEALLTNEFKGKECYNGAPGDLSPGPLGEVKLSKLHNTTAALLRPDCTLIGEDIVYSMDI 784 (820)
Q Consensus 705 ~~~iP~~~~W~~yiSp~~Ya~eal~~nef~~~~c~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~c~~~G~~~L~~~g~ 784 (820)
.++||+||+|++|+||++|+|||++.|||.+.....|. +.+ ....|+.+|+++|+.||+
T Consensus 524 ~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~-------~~~--------------~~~~c~~~g~~~l~~~g~ 582 (617)
T TIGR00955 524 SDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECT-------SAN--------------TTGPCPSSGEVILETLSF 582 (617)
T ss_pred hhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCcccccc-------CcC--------------cCCCCCcChHHHHHhcCC
Confidence 99999999999999999999999999999886321110 000 123588899999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 003437 785 QIENIWFDILILLAWGVLYRLFFYLVLRFYSKNVR 819 (820)
Q Consensus 785 ~~~~~w~~~~il~~~~~~~~~l~~l~L~~~~~~~r 819 (820)
+.++.|.|+++|++++++|++++|++|+++.+++|
T Consensus 583 ~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 583 RNADLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999887776
No 3
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=7.4e-99 Score=893.20 Aligned_cols=603 Identities=27% Similarity=0.442 Sum_probs=476.6
Q ss_pred CCceEEEEEEEEEECcccccc----------------c-ccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH
Q 003437 44 PGHGLEFKNLSYSIMKKQKKD----------------G-VWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALA 106 (820)
Q Consensus 44 ~~~~L~~~nls~~~~~~~~~~----------------~-~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~ 106 (820)
++..+++.|++|+......+. . ....+++.+|+|||+++++||++||+||||||||||||+|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 456799999999875331000 0 00112467999999999999999999999999999999999
Q ss_pred cCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 003437 107 GRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA 186 (820)
Q Consensus 107 G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 186 (820)
|+.++...+|+|.+||+++... .++.+|||+|++.+++.+||+||+.|.+.++.+...+++++.++++++++.+||+++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 9986544589999999987643 345689999999999999999999998877655445666777889999999999999
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhc
Q 003437 187 THTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLL 266 (820)
Q Consensus 187 ~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 266 (820)
+|+.+|+...++|||||||||+||++|+.+|+||||||||+|||+.++.++++.|++++++|+|||+++||++.++.++|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999998889999999999999999999999999999999999999999999999999889999999999986688999
Q ss_pred CEEEEEeCCeEEEEcCccchhhhhhccCCCCCCCCChHHHHHHHhhhccccccCCCCceecccCCCCCccccCCCCCCCC
Q 003437 267 DRIIVLARGRLVYMGSPVALPAHLAGFGRTVPDGENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFPKIP 346 (820)
Q Consensus 267 D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (820)
|++++|++|++++.|+++++.+||+++|++||.+.|||||++++++...... +.... . .+
T Consensus 275 D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~------------~~~~~--~------~~ 334 (659)
T PLN03211 275 DSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTD------------GVSER--E------KP 334 (659)
T ss_pred ceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCC------------Ccccc--c------cc
Confidence 9999999999999999999999999999999999999999999985321100 00000 0 00
Q ss_pred CCCCccccchhhcccccccccCCCCCCCCCCCccccCCCCCCchHHHHHHHhhhhccccccccccccchhhhhhhhhccc
Q 003437 347 RTPASRSKHAISLRSQAFSFSTGNMTPGANSTQFDYYDDDDDDDEEFDKSLERKTAATPIINMQSGAYNNRLASQFYKDF 426 (820)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (820)
. . .+...+.|.+..... ....+. ..
T Consensus 335 ~---------~----------------------------~~~l~~~~~~~~~~~-------------~~~~~~----~~- 359 (659)
T PLN03211 335 N---------V----------------------------KQSLVASYNTLLAPK-------------VKAAIE----MS- 359 (659)
T ss_pred h---------H----------------------------HHHHHHHHHhhccHH-------------HHHHHh----hh-
Confidence 0 0 000001111100000 000000 00
Q ss_pred chhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCccccCCCCCCCCchhhhhhhhh
Q 003437 427 SVWLYHGVVGTPRRRPSWTPARTPGRTPAKTPISGARSFVSGEYYSTPQQNPSRLKTPVVFSTSTDPYAPSYEQELEDME 506 (820)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (820)
. ... .. .. .+. ... .+
T Consensus 360 --~---------------~~~-~~-~~----~~~------------~~~-----------------------------~~ 375 (659)
T PLN03211 360 --H---------------FPQ-AN-AR----FVG------------SAS-----------------------------TK 375 (659)
T ss_pred --h---------------hhc-ch-hh----hhh------------ccc-----------------------------cc
Confidence 0 000 00 00 000 000 00
Q ss_pred hhccCCCCCCCCCCCcHHHHHHHHHHhhHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Q 003437 507 EKVLDEPDHGPKFANPWLREVAVLSWRTALNVIRTPELFLSREIVFAVMALILSSLFKNLSHHDFKTINRLLNFYIFAVC 586 (820)
Q Consensus 507 ~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rdp~~~~~r~~~~i~~~lliG~lf~~l~~~~~~~~~~~~g~~ff~~~ 586 (820)
. .......+.++||+|+.+|++|++++ +||+.++.+|+++++++|+++|++||+++ ..+++++.|++||+++
T Consensus 376 --~--~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~---~~~~~~r~g~lff~~~ 447 (659)
T PLN03211 376 --E--HRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD---FRDVQDRLGLLFFISI 447 (659)
T ss_pred --c--cccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHH
Confidence 0 00001235578999999999999999 89999999999999999999999999974 5689999999999877
Q ss_pred HHHH-hhhhcHHHHHHHhhHHHhHhcCCCCChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCCch---HHHHHHHHHH
Q 003437 587 LVFF-SSNDAVPTFIQERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSS---LLNFWMILFA 662 (820)
Q Consensus 587 ~~~~-~~~~~i~~f~~eR~vf~RE~~~g~Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~---f~~f~l~l~l 662 (820)
+.++ +++++++.|+.||+||+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||+++ |++|++++++
T Consensus 448 ~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l 527 (659)
T PLN03211 448 FWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLG 527 (659)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHH
Confidence 7554 67789999999999999999999999999999999999999999999999999999999964 7888899999
Q ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhccceecCCCCCcceeehhccChhhHHHHHHHHhhcCCCccccCC
Q 003437 663 SLITTNAYVMLVSALVPSYIAGYAVVIATTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTNEFKGKECYNGA 742 (820)
Q Consensus 663 ~~~~~~s~~~~i~a~~ps~~~a~~v~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~nef~~~~c~~~~ 742 (820)
..++++++|+++++++|+..+|+++++++++++++|+||+++ +||+||+|++|+||++|+|||+++|||.+.++..
T Consensus 528 ~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~-- 603 (659)
T PLN03211 528 YVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRIS-- 603 (659)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccc--
Confidence 999999999999999999999999999999999999999997 7999999999999999999999999998653210
Q ss_pred CCCCCCCCCccccccccccccccccCCCcccchHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 003437 743 PGDLSPGPLGEVKLSKLHNTTAALLRPDCTLIGEDIVYSMDIQIENIWFDILILLAWGVLYRLFFYLVLRFYSK 816 (820)
Q Consensus 743 ~~~~~p~p~~~~~~~~~~~~~~~~~~~~c~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~l~~l~L~~~~~ 816 (820)
..+.|.... + .....|.+.++.+++ ..+.|.|+++|++++++||+++|++|++.++
T Consensus 604 -~~~~C~~~~----------~--~~~~~c~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~~ 659 (659)
T PLN03211 604 -SLLGCSLPH----------G--SDRASCKFVEEDVAG-----QISPATSVSVLIFMFVGYRLLAYLALRRIKH 659 (659)
T ss_pred -cccCCCCcc----------c--CCCCCCccchhhhhc-----ccchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 001110000 0 012346655554443 4479999999999999999999999987653
No 4
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.2e-97 Score=939.88 Aligned_cols=591 Identities=25% Similarity=0.420 Sum_probs=491.8
Q ss_pred CceEEEEEEEEEECcccccc-cccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCE
Q 003437 45 GHGLEFKNLSYSIMKKQKKD-GVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK 123 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~-~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~ 123 (820)
+..++|+||+|+++.+.... .....+.+.+|+|||++++|||+++|+||||||||||||+|+|+..+++.+|+|.+||.
T Consensus 865 ~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~ 944 (1470)
T PLN03140 865 PLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGF 944 (1470)
T ss_pred cceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCc
Confidence 44699999999986432100 00111235699999999999999999999999999999999999765567899999999
Q ss_pred eCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 124 PVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 124 ~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
+......++.+|||+|++.+++.+||+|||.|++.++.+...+++++.++++++++.+||.+++|+.+|+..+++|||||
T Consensus 945 ~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGe 1024 (1470)
T PLN03140 945 PKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQ 1024 (1470)
T ss_pred cCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHH
Confidence 87644456778999999999999999999999988876655666777788999999999999999999987778999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC-CeEEEEcC
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR-GRLVYMGS 282 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~-G~iv~~G~ 282 (820)
||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|||+.+++++||++++|++ |+++++|+
T Consensus 1025 rkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~ 1104 (1470)
T PLN03140 1025 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGP 1104 (1470)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECC
Confidence 99999999999999999999999999999999999999999989999999999999768889999999996 89999999
Q ss_pred c----cchhhhhhcc-CC-CCCCCCChHHHHHHHhhhccccccCCCCceecccCCCCCccccCCCCCCCCCCCCccccch
Q 003437 283 P----VALPAHLAGF-GR-TVPDGENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFPKIPRTPASRSKHA 356 (820)
Q Consensus 283 ~----~~~~~~f~~~-g~-~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (820)
+ +++.+||+++ |. +||+..|||||++++++...+. .
T Consensus 1105 ~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~---------------~----------------------- 1146 (1470)
T PLN03140 1105 LGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV---------------K----------------------- 1146 (1470)
T ss_pred cccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc---------------c-----------------------
Confidence 6 6899999997 66 4999999999999987421000 0
Q ss_pred hhcccccccccCCCCCCCCCCCccccCCCCCCchHHHHHHHhhhhccccccccccccchhhhhhhhhcccchhccccccC
Q 003437 357 ISLRSQAFSFSTGNMTPGANSTQFDYYDDDDDDDEEFDKSLERKTAATPIINMQSGAYNNRLASQFYKDFSVWLYHGVVG 436 (820)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (820)
...+..+.|.++...+.. .+. ...
T Consensus 1147 ----------------------------~~~d~~~~~~~s~~~~~~-------------~~~-------~~~-------- 1170 (1470)
T PLN03140 1147 ----------------------------LGIDFAEHYKSSSLYQRN-------------KAL-------VKE-------- 1170 (1470)
T ss_pred ----------------------------ccchHHHHHhccHHHHHH-------------HHH-------HHH--------
Confidence 000112333333111000 000 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCccccCCCCCCCCchhhhhhhhhhhccCCCCCC
Q 003437 437 TPRRRPSWTPARTPGRTPAKTPISGARSFVSGEYYSTPQQNPSRLKTPVVFSTSTDPYAPSYEQELEDMEEKVLDEPDHG 516 (820)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (820)
+.. +.+. + . .....
T Consensus 1171 ----------------------~~~----------~~~~------------~-------~---------------~~~~~ 1184 (1470)
T PLN03140 1171 ----------------------LST----------PPPG------------A-------S---------------DLYFA 1184 (1470)
T ss_pred ----------------------hcc----------CCCC------------c-------c---------------ccccC
Confidence 000 0000 0 0 00002
Q ss_pred CCCCCcHHHHHHHHHHhhHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCC--CHHHHHHHHHHHHHHHHHHHHh-hh
Q 003437 517 PKFANPWLREVAVLSWRTALNVIRTPELFLSREIVFAVMALILSSLFKNLSHH--DFKTINRLLNFYIFAVCLVFFS-SN 593 (820)
Q Consensus 517 ~~~~~s~~~Q~~~L~~R~~~~~~Rdp~~~~~r~~~~i~~~lliG~lf~~l~~~--~~~~~~~~~g~~ff~~~~~~~~-~~ 593 (820)
.+|+.+||+|+++|++|+++++||||.++.+|+++++++|+++|++||+++++ ++++++++.|++|+++++..+. +.
T Consensus 1185 ~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~ 1264 (1470)
T PLN03140 1185 TQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCS 1264 (1470)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35778999999999999999999999999999999999999999999999863 3578889999999888777664 45
Q ss_pred hcHHHHHHHhhHHHhHhcCCCCChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCCch---HHHHHHHHHHHHHHHHHH
Q 003437 594 DAVPTFIQERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSS---LLNFWMILFASLITTNAY 670 (820)
Q Consensus 594 ~~i~~f~~eR~vf~RE~~~g~Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~---f~~f~l~l~l~~~~~~s~ 670 (820)
+.+|.|..||+||+||+++|+|++++|++|++++|+|+.++.+++|++|+|||+||+.+ |++|+++++++.+++.++
T Consensus 1265 ~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~ 1344 (1470)
T PLN03140 1265 TVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYY 1344 (1470)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999854 778888888889999999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHhccceecCCCCCcceeehhccChhhHHHHHHHHhhcCCCccccCCCCCCCCCC
Q 003437 671 VMLVSALVPSYIAGYAVVIATTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTNEFKGKECYNGAPGDLSPGP 750 (820)
Q Consensus 671 ~~~i~a~~ps~~~a~~v~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~nef~~~~c~~~~~~~~~p~p 750 (820)
|+++++++|+.++|.++++++++++++|+||++|.++||+||+|++|+||++|+|+|++.|||++..+.+. .|
T Consensus 1345 g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~-------~~ 1417 (1470)
T PLN03140 1345 GMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIK-------VP 1417 (1470)
T ss_pred HHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCccc-------CC
Confidence 99999999999999999999999999999999999999999999999999999999999999998743210 01
Q ss_pred CccccccccccccccccCCCcccchHHH-HHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 003437 751 LGEVKLSKLHNTTAALLRPDCTLIGEDI-VYSMDIQIENIWFDILILLAWGVLYRLFFYLVLRFYSKNVR 819 (820)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~c~~~G~~~-L~~~g~~~~~~w~~~~il~~~~~~~~~l~~l~L~~~~~~~r 819 (820)
.+ .+ ..+++++ +++|||+++++|++++|+++|+++|++++++++++.+.+||
T Consensus 1418 ~~---------------~~--~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1418 GG---------------AP--DPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred CC---------------CC--CCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 00 00 1245666 68899999999999999999999999999999999999987
No 5
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3.5e-97 Score=939.20 Aligned_cols=600 Identities=25% Similarity=0.438 Sum_probs=499.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCceEEEECCEeC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG-SLEGSVRIDGKPV 125 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~-~~~G~I~i~G~~~ 125 (820)
.|+++||+++++.+. +++.+|+|||+++++||++||+||||||||||||+|+|+.+++ +++|+|.+||+++
T Consensus 759 ~l~~~nl~~~~~~~~--------~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~ 830 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKK--------EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPL 830 (1394)
T ss_pred eEEEEeeEEEecCCC--------CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEEC
Confidence 489999999985321 2356999999999999999999999999999999999998532 4679999999998
Q ss_pred CCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 126 TTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
.. ..++.+|||+|++.+++.+||+|||.|++.++.+...+++++.++++++++.+||.+++|+.+|+.. .+|||||||
T Consensus 831 ~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqrq 908 (1394)
T TIGR00956 831 DS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRK 908 (1394)
T ss_pred Ch-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHhh
Confidence 54 4567899999999999999999999999988866556677778899999999999999999998543 379999999
Q ss_pred HHHHHHHHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC-eEEEEcCc
Q 003437 206 RVSIGIDIIHKPS-LLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG-RLVYMGSP 283 (820)
Q Consensus 206 Rv~ia~aL~~~P~-lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G-~iv~~G~~ 283 (820)
||+||++|+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++| +++++|++
T Consensus 909 Rl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~ 988 (1394)
T TIGR00956 909 RLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDL 988 (1394)
T ss_pred HHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCc
Confidence 9999999999997 999999999999999999999999999889999999999997677889999999997 99999997
Q ss_pred ----cchhhhhhccCC-CCCCCCChHHHHHHHhhhccccccCCCCceecccCCCCCccccCCCCCCCCCCCCccccchhh
Q 003437 284 ----VALPAHLAGFGR-TVPDGENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFPKIPRTPASRSKHAIS 358 (820)
Q Consensus 284 ----~~~~~~f~~~g~-~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (820)
+++.+||+..|+ +||++.|||||++|+++...... .
T Consensus 989 ~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~-------------------~-------------------- 1029 (1394)
T TIGR00956 989 GENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAH-------------------A-------------------- 1029 (1394)
T ss_pred ccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccc-------------------h--------------------
Confidence 578999999996 99999999999999875311000 0
Q ss_pred cccccccccCCCCCCCCCCCccccCCCCCCchHHHHHHHhhhhccccccccccccchhhhhhhhhcccchhccccccCCC
Q 003437 359 LRSQAFSFSTGNMTPGANSTQFDYYDDDDDDDEEFDKSLERKTAATPIINMQSGAYNNRLASQFYKDFSVWLYHGVVGTP 438 (820)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (820)
..+..+.|..+.+.+.. .+.+. ...
T Consensus 1030 ---------------------------~~~~~~~~~~s~~~~~~------------~~~~~-~~~--------------- 1054 (1394)
T TIGR00956 1030 ---------------------------NQDYHEVWRNSSEYQAV------------KNELD-RLE--------------- 1054 (1394)
T ss_pred ---------------------------hccHHHHHhcCHHHHHH------------HHHHH-Hhh---------------
Confidence 00011222222110000 00000 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCccccCCCCCCCCchhhhhhhhhhhccCCCCCCCC
Q 003437 439 RRRPSWTPARTPGRTPAKTPISGARSFVSGEYYSTPQQNPSRLKTPVVFSTSTDPYAPSYEQELEDMEEKVLDEPDHGPK 518 (820)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (820)
. .... .+. . ..+...++
T Consensus 1055 ------~------------~~~~-----------~~~------------~----------------------~~~~~~~~ 1071 (1394)
T TIGR00956 1055 ------A------------ELSK-----------AED------------D----------------------NDPDALSK 1071 (1394)
T ss_pred ------c------------cccc-----------Ccc------------c----------------------cccccccc
Confidence 0 0000 000 0 00001235
Q ss_pred CCCcHHHHHHHHHHhhHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhcHHH
Q 003437 519 FANPWLREVAVLSWRTALNVIRTPELFLSREIVFAVMALILSSLFKNLSHHDFKTINRLLNFYIFAVCLVFFSSNDAVPT 598 (820)
Q Consensus 519 ~~~s~~~Q~~~L~~R~~~~~~Rdp~~~~~r~~~~i~~~lliG~lf~~l~~~~~~~~~~~~g~~ff~~~~~~~~~~~~i~~ 598 (820)
|+++||+|+++|++|+++++||||.++.+|+++++++|+++|++||++++ ++.+++++.|++|+.+++..+..++.+|.
T Consensus 1072 ~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~-~~~~i~~~~g~~f~~~~~~~~~~~~~~~~ 1150 (1394)
T TIGR00956 1072 YAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT-SLQGLQNQMFAVFMATVLFNPLIQQYLPP 1150 (1394)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 78899999999999999999999999999999999999999999999875 68899999999888887776667788999
Q ss_pred HHHHhhHH-HhHhcCCCCChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCCch----------HHHHHHHHHHHHHHH
Q 003437 599 FIQERFIF-IRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSS----------LLNFWMILFASLITT 667 (820)
Q Consensus 599 f~~eR~vf-~RE~~~g~Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~----------f~~f~l~l~l~~~~~ 667 (820)
|+.||.+| +||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||+.+ |++||++++++.+++
T Consensus 1151 f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 1230 (1394)
T TIGR00956 1151 FVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYF 1230 (1394)
T ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHH
Confidence 99999886 8999999999999999999999999999999999999999999743 788888889999999
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHhccceecCCCCCcceeehhccChhhHHHHHHHHhhcCCC--ccccCCCCC
Q 003437 668 NAYVMLVSALVPSYIAGYAVVIATTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTNEFKGK--ECYNGAPGD 745 (820)
Q Consensus 668 ~s~~~~i~a~~ps~~~a~~v~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~nef~~~--~c~~~~~~~ 745 (820)
.++|+++++++|+..+|..+++++++++++|+||+++.++||.||+|++|+||++|+|+|++.|||++. .|...+...
T Consensus 1231 ~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~ 1310 (1394)
T TIGR00956 1231 STLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLT 1310 (1394)
T ss_pred HHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccce
Confidence 999999999999999999999999999999999999999999999999999999999999999999988 586644444
Q ss_pred CCCCCCccccccccc----------cccccc-cCCCccc-chHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 003437 746 LSPGPLGEVKLSKLH----------NTTAAL-LRPDCTL-IGEDIVYSMDIQIENIWFDILILLAWGVLYRLFFYLVLRF 813 (820)
Q Consensus 746 ~~p~p~~~~~~~~~~----------~~~~~~-~~~~c~~-~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~l~~l~L~~ 813 (820)
+.| |.|++|.+++. .+..+. .+.+|++ +|+++|+.+|++.++.|+|++|+++|++++ ++++++|++
T Consensus 1311 f~p-p~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~ 1388 (1394)
T TIGR00956 1311 FNP-PSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIATVFFYW 1388 (1394)
T ss_pred ecC-CCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HHHHHhhhe
Confidence 555 67788876542 111222 2347876 999999999999999999999999999999 889999988
Q ss_pred ccc
Q 003437 814 YSK 816 (820)
Q Consensus 814 ~~~ 816 (820)
+.|
T Consensus 1389 ~~r 1391 (1394)
T TIGR00956 1389 LAR 1391 (1394)
T ss_pred EEE
Confidence 754
No 6
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.1e-96 Score=934.69 Aligned_cols=606 Identities=24% Similarity=0.368 Sum_probs=483.0
Q ss_pred ccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CCCceEEEECCEeCCCc--cccceEEEEccCCCCCC
Q 003437 70 KEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ--GSLEGSVRIDGKPVTTS--YMKMVSSYVMQDDQLFP 145 (820)
Q Consensus 70 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~--~~~~G~I~i~G~~~~~~--~~~~~~gyv~Q~~~l~~ 145 (820)
+++.+|+|||+++++||+++|+||||||||||||+|+|+..+ .+++|+|.+||+++... ..++.++||+|++.+++
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 346799999999999999999999999999999999998632 34789999999987532 24556899999999999
Q ss_pred CCCHHHHHHHHHHhcCCC----CCCHHHHHHH-HHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEE
Q 003437 146 MLTVFETFMFAAEVRLPP----SISRDEKKKR-VYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLL 220 (820)
Q Consensus 146 ~lTV~e~l~~~~~~~~~~----~~~~~~~~~~-v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lL 220 (820)
.+||+|||.|++.++.+. ..++++..++ ++++++.+||++++|+++|++.+++|||||||||+||++|+.+|++|
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 999999999998877542 2345554444 56789999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchhhhhhccCCCCCC
Q 003437 221 FLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFGRTVPD 299 (820)
Q Consensus 221 llDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~~~ 299 (820)
||||||+|||+.++.++++.|++++++ |+|||+++|||+.++.++||++++|++|+++++|+++++.+||+++|++||+
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~ 311 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPD 311 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999874 9999999999977899999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhhhccccccCCCCceecccCCCCCccccCCCCCCCCCCCCccccchhhcccccccccCCCCCCCCCCCc
Q 003437 300 GENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFPKIPRTPASRSKHAISLRSQAFSFSTGNMTPGANSTQ 379 (820)
Q Consensus 300 ~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (820)
+.||+||++++++..... . ..+.+ . ..|+++
T Consensus 312 ~~n~aDfl~~~~~~~~~~-~---------~~~~e----~-----~~~~~~------------------------------ 342 (1394)
T TIGR00956 312 RQTTADFLTSLTSPAERQ-I---------KPGYE----K-----KVPRTP------------------------------ 342 (1394)
T ss_pred CCChHHHHHhccChhhhh-c---------ccccc----c-----cCCCCH------------------------------
Confidence 999999999987532110 0 00000 0 011100
Q ss_pred cccCCCCCCchHHHHHHHhhhhccccccccccccchhhhhhhhhcccchhccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 003437 380 FDYYDDDDDDDEEFDKSLERKTAATPIINMQSGAYNNRLASQFYKDFSVWLYHGVVGTPRRRPSWTPARTPGRTPAKTPI 459 (820)
Q Consensus 380 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (820)
++..+.|.++...+ .+. ++...... ..+ .
T Consensus 343 -------~~~~~~~~~s~~~~----------------~~~----~~~~~~~~--------~~~----------------~ 371 (1394)
T TIGR00956 343 -------QEFETYWRNSPEYA----------------QLM----KEIDEYLD--------RCS----------------E 371 (1394)
T ss_pred -------HHHHHHHHcCHHHH----------------HHH----HHHHHHhh--------hcc----------------c
Confidence 11122232221100 000 00000000 000 0
Q ss_pred CCCccccccccCCCCCCCCCCCCCCccccCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCcHHHHHHHHHHhhHHHhh
Q 003437 460 SGARSFVSGEYYSTPQQNPSRLKTPVVFSTSTDPYAPSYEQELEDMEEKVLDEPDHGPKFANPWLREVAVLSWRTALNVI 539 (820)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~ 539 (820)
. .. .+.+... ...++.. .....+.|..|||+|+++|++|+++++|
T Consensus 372 ~-------------~~-------------------~~~~~~~--~~~~~~~-~~~~~~~~~~s~~~Q~~~l~~R~~~~~~ 416 (1394)
T TIGR00956 372 S-------------DT-------------------KEAYRES--HVAKQSK-RTRPSSPYTVSFSMQVKYCLARNFLRMK 416 (1394)
T ss_pred h-------------hh-------------------HHHHHHH--HHhhhcc-cccCCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 0 00 0000000 0000000 0011345788999999999999999999
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHhhHHHhHhcCCCCChhH
Q 003437 540 RTPELFLSREIVFAVMALILSSLFKNLSHHDFKTINRLLNFYIFAVCLVFFSSNDAVPTFIQERFIFIRETSHNAYRASS 619 (820)
Q Consensus 540 Rdp~~~~~r~~~~i~~~lliG~lf~~l~~~~~~~~~~~~g~~ff~~~~~~~~~~~~i~~f~~eR~vf~RE~~~g~Y~~~a 619 (820)
|||.++.+|+++++++|+++|++||+++. +.++++++.|++||++++..+.++..++.++.||+||+||+.+++|++++
T Consensus 417 Rd~~~~~~r~~~~ii~~li~G~~F~~~~~-~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~a 495 (1394)
T TIGR00956 417 GNPSFTLFMVFGNIIMALILSSVFYNLPK-NTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSA 495 (1394)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhcCCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHH
Confidence 99999999999999999999999999876 56789999999999999988888888999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHhHHhhhhhhccCCCch---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 003437 620 YVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSS---LLNFWMILFASLITTNAYVMLVSALVPSYIAGYAVVIATTALFF 696 (820)
Q Consensus 620 Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~---f~~f~l~l~l~~~~~~s~~~~i~a~~ps~~~a~~v~~~~~~~~~ 696 (820)
|++|++++|+|+.++.+++|++|+|||+||+.+ |++|+++++++.+++.++++++++++|+..+|++++++++++++
T Consensus 496 y~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~ 575 (1394)
T TIGR00956 496 DAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALS 575 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999954 78888899999999999999999999999999999999999999
Q ss_pred HhccceecCCCCCcceeehhccChhhHHHHHHHHhhcCCCc--cccCCCCCCCCCCCcccccccccccccc-c-cCCCcc
Q 003437 697 LTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTNEFKGKE--CYNGAPGDLSPGPLGEVKLSKLHNTTAA-L-LRPDCT 772 (820)
Q Consensus 697 lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~nef~~~~--c~~~~~~~~~p~p~~~~~~~~~~~~~~~-~-~~~~c~ 772 (820)
+|+||+++.++||+||+|++|+||++|+|||+++|||++.. |.. ..+.+|++.+. ......|.. + ....|.
T Consensus 576 lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~--~~p~g~~y~~~---~~~~~~C~~~g~~~g~~~ 650 (1394)
T TIGR00956 576 IYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQ--YVPSGGGYDNL---GVTNKVCTVVGAEPGQDY 650 (1394)
T ss_pred HHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccc--cccCCCCCCCC---CccCccccCCCCcCCccc
Confidence 99999999999999999999999999999999999999873 421 11111211110 000011110 0 112456
Q ss_pred cchHHHHH-HcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 003437 773 LIGEDIVY-SMDIQIENIWFDILILLAWGVLYRLFFYLVLRFYSK 816 (820)
Q Consensus 773 ~~G~~~L~-~~g~~~~~~w~~~~il~~~~~~~~~l~~l~L~~~~~ 816 (820)
.+|+++|+ .||++.+|+|+|++||++|+++|+++++++|++.+.
T Consensus 651 ~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 651 VDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred ccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 79999998 689999999999999999999999999999999773
No 7
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.4e-95 Score=917.71 Aligned_cols=574 Identities=24% Similarity=0.398 Sum_probs=471.2
Q ss_pred ccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCceEEEECCEeCCCccccceEEEEccCCCCCCCCC
Q 003437 70 KEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG-SLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLT 148 (820)
Q Consensus 70 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~-~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lT 148 (820)
.++.||+|||+.++|||+++|+||||||||||||+|+|++.+. ..+|+|.+||+++.....++.++||+|++.+++.+|
T Consensus 176 ~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 176 TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred ccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence 3567999999999999999999999999999999999998542 348999999999865444677999999999999999
Q ss_pred HHHHHHHHHHhcCCC-------CCCHHHH------------------------HHHHHHHHHHcCCCccccccccCCCCC
Q 003437 149 VFETFMFAAEVRLPP-------SISRDEK------------------------KKRVYELLDQLGLRSATHTYIGNEGRR 197 (820)
Q Consensus 149 V~e~l~~~~~~~~~~-------~~~~~~~------------------------~~~v~~~l~~lgL~~~~~~~ig~~~~~ 197 (820)
|+|||.|++.++.+. ..+++++ ...++++|+.+||++++|+.+|++.++
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 999999998875321 1112221 123578999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
+|||||||||+||++|+.+|++|||||||+|||+.++.++++.|+++++ .|+|||+++|||+.+++++||+|++|++|+
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ 415 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQ 415 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence 9999999999999999999999999999999999999999999999987 599999999999878999999999999999
Q ss_pred EEEEcCccchhhhhhccCCCCCCCCChHHHHHHHhhhccccccCCCCceecccCCCCCccccCCCCCCCCCCCCccccch
Q 003437 277 LVYMGSPVALPAHLAGFGRTVPDGENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFPKIPRTPASRSKHA 356 (820)
Q Consensus 277 iv~~G~~~~~~~~f~~~g~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (820)
++|+|+++++.+||+++|++||++.|||||++++++..++.. ++.... .|...
T Consensus 416 ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~--------~~~~~~------------~p~~~------- 468 (1470)
T PLN03140 416 IVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQ--------YWADRN------------KPYRY------- 468 (1470)
T ss_pred EEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhh--------hhhccC------------Ccccc-------
Confidence 999999999999999999999999999999999986422110 000000 00000
Q ss_pred hhcccccccccCCCCCCCCCCCccccCCCCCCchHHHHHHHhhhhccccccccccccchhhhhhhhhcccchhccccccC
Q 003437 357 ISLRSQAFSFSTGNMTPGANSTQFDYYDDDDDDDEEFDKSLERKTAATPIINMQSGAYNNRLASQFYKDFSVWLYHGVVG 436 (820)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (820)
...++..+.|.++.... .+. ++.+.
T Consensus 469 ---------------------------~~~~~~~~~~~~s~~~~----------------~~~----~~~~~-------- 493 (1470)
T PLN03140 469 ---------------------------ISVSEFAERFKSFHVGM----------------QLE----NELSV-------- 493 (1470)
T ss_pred ---------------------------CCHHHHHHHHHhcHHHH----------------HHH----HHHhh--------
Confidence 00001122333221100 000 00000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCccccCCCCCCCCchhhhhhhhhhhccCCCCCC
Q 003437 437 TPRRRPSWTPARTPGRTPAKTPISGARSFVSGEYYSTPQQNPSRLKTPVVFSTSTDPYAPSYEQELEDMEEKVLDEPDHG 516 (820)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (820)
| .+. ... . ......
T Consensus 494 -----~----------------~~~-----------~~~---------------------------------~-~~~~~~ 507 (1470)
T PLN03140 494 -----P----------------FDK-----------SQS---------------------------------H-KAALVF 507 (1470)
T ss_pred -----h----------------hhh-----------hhc---------------------------------c-cccccC
Confidence 0 000 000 0 000012
Q ss_pred CCCCCcHHHHHHHHHHhhHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCC--CHHHHHHHHHHHHHHHHHHHHhhhh
Q 003437 517 PKFANPWLREVAVLSWRTALNVIRTPELFLSREIVFAVMALILSSLFKNLSHH--DFKTINRLLNFYIFAVCLVFFSSND 594 (820)
Q Consensus 517 ~~~~~s~~~Q~~~L~~R~~~~~~Rdp~~~~~r~~~~i~~~lliG~lf~~l~~~--~~~~~~~~~g~~ff~~~~~~~~~~~ 594 (820)
++|..+++.|++.|++|+++.++|||.++..|+++.+++|+++|++||+++.+ +..+.+.+.|.+||++++.++.+++
T Consensus 508 ~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~ 587 (1470)
T PLN03140 508 SKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFA 587 (1470)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 35778999999999999999999999999999999999999999999998642 2233455667788888888888889
Q ss_pred cHHHHHHHhhHHHhHhcCCCCChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCCch---HHHHHHHHHHHHHHHHHHH
Q 003437 595 AVPTFIQERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSS---LLNFWMILFASLITTNAYV 671 (820)
Q Consensus 595 ~i~~f~~eR~vf~RE~~~g~Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~---f~~f~l~l~l~~~~~~s~~ 671 (820)
+++.++.||+||+|||++++|++++|++|++++++|+.++.+++|++|+|||+||+++ ||+|+++++++.+++.+++
T Consensus 588 ~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~ 667 (1470)
T PLN03140 588 ELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIF 667 (1470)
T ss_pred HHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999964 7888899999999999999
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHhccceecCCCCCcceeehhccChhhHHHHHHHHhhcCCCccccCCCCCCCCCCC
Q 003437 672 MLVSALVPSYIAGYAVVIATTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTNEFKGKECYNGAPGDLSPGPL 751 (820)
Q Consensus 672 ~~i~a~~ps~~~a~~v~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~nef~~~~c~~~~~~~~~p~p~ 751 (820)
+++++++|++.+|+++++++++++++|+||+|+.++||+||+|++|+||++|||||+++|||.+..+.++ .|
T Consensus 668 ~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~-----~~--- 739 (1470)
T PLN03140 668 RLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNK-----MA--- 739 (1470)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCc-----cc---
Confidence 9999999999999999999999999999999999999999999999999999999999999977532110 00
Q ss_pred ccccccccccccccccCCCcccchHHHHHHcCCCCc--chHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 003437 752 GEVKLSKLHNTTAALLRPDCTLIGEDIVYSMDIQIE--NIWFDILILLAWGVLYRLFFYLVLRFYS 815 (820)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~c~~~G~~~L~~~g~~~~--~~w~~~~il~~~~~~~~~l~~l~L~~~~ 815 (820)
+..+...|+++|+.+|+..+ +.|+|+++|++|+++|++++|++|++.+
T Consensus 740 ----------------~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 740 ----------------SDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred ----------------CCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 01234689999999999754 6799999999999999999999999876
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.8e-95 Score=865.01 Aligned_cols=580 Identities=29% Similarity=0.480 Sum_probs=491.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
...|+|+.++.+.+. +.+++|+||++.++||.++||||+|||||||||++|+||...+.++|+|++||.+.+
T Consensus 787 V~~w~dl~~~~~~qG--------~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~ 858 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQG--------GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKD 858 (1391)
T ss_pred eEEEEeCCccccccc--------cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCc
Confidence 466777777664321 356799999999999999999999999999999999999877789999999999998
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
...++|.+|||.|+|.|.|.+||+|.|.|+|.+|+|..++.+++.+.|+++++.|+|++++|..||..+ +|||.+||||
T Consensus 859 q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKr 937 (1391)
T KOG0065|consen 859 QETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKR 937 (1391)
T ss_pred hhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhce
Confidence 777899999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred HHHHHHHhcCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC-CeEEEEcCcc
Q 003437 207 VSIGIDIIHKP-SLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR-GRLVYMGSPV 284 (820)
Q Consensus 207 v~ia~aL~~~P-~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~-G~iv~~G~~~ 284 (820)
++||.+|+.+| .||||||||||||+.++..|++.+|++++.|+||+||+|||+..+++.||++++|++ |++||.|+..
T Consensus 938 LTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen 938 LTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred eeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence 99999999999 899999999999999999999999999999999999999999999999999999997 7999999985
Q ss_pred ----chhhhhhccC-CCCCCCCChHHHHHHHhhhccccccCCCCceecccCCCCCccccCCCCCCCCCCCCccccchhhc
Q 003437 285 ----ALPAHLAGFG-RTVPDGENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFPKIPRTPASRSKHAISL 359 (820)
Q Consensus 285 ----~~~~~f~~~g-~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (820)
.+++||++.| .+||+..|||||++|+++...+..
T Consensus 1018 ~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~----------------------------------------- 1056 (1391)
T KOG0065|consen 1018 ENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEAS----------------------------------------- 1056 (1391)
T ss_pred cccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccc-----------------------------------------
Confidence 4567999987 899999999999999975311100
Q ss_pred ccccccccCCCCCCCCCCCccccCCCCCCchHHHHHHHhhhhccccccccccccchhhhhhhhhcccchhccccccCCCC
Q 003437 360 RSQAFSFSTGNMTPGANSTQFDYYDDDDDDDEEFDKSLERKTAATPIINMQSGAYNNRLASQFYKDFSVWLYHGVVGTPR 439 (820)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (820)
.+.|..+.|.+|.+.+... +.+ ++
T Consensus 1057 -------------------------~~~D~a~~w~~S~e~k~~~------------e~v-----~~-------------- 1080 (1391)
T KOG0065|consen 1057 -------------------------LSVDFAEIWKNSEEYKRNK------------ELV-----KE-------------- 1080 (1391)
T ss_pred -------------------------cCccHHHHHhccHHHHHHH------------HHH-----HH--------------
Confidence 0012234444443221110 000 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCccccCCCCCCCCchhhhhhhhhhhccCCCCCCCCC
Q 003437 440 RRPSWTPARTPGRTPAKTPISGARSFVSGEYYSTPQQNPSRLKTPVVFSTSTDPYAPSYEQELEDMEEKVLDEPDHGPKF 519 (820)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (820)
++. .++ ..+ . +....++|
T Consensus 1081 -------------------l~~-----------~~~----------~~~-------~---------------~~~~~~~f 1098 (1391)
T KOG0065|consen 1081 -------------------LSQ-----------PPP----------GFS-------T---------------DLEFKTRF 1098 (1391)
T ss_pred -------------------Hhc-----------CCc----------cCC-------c---------------cccccccc
Confidence 000 000 000 0 00114579
Q ss_pred CCcHHHHHHHHHHhhHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhcHHH-
Q 003437 520 ANPWLREVAVLSWRTALNVIRTPELFLSREIVFAVMALILSSLFKNLSHHDFKTINRLLNFYIFAVCLVFFSSNDAVPT- 598 (820)
Q Consensus 520 ~~s~~~Q~~~L~~R~~~~~~Rdp~~~~~r~~~~i~~~lliG~lf~~l~~~~~~~~~~~~g~~ff~~~~~~~~~~~~i~~- 598 (820)
++|+|.|++.++||++..+||+|.++++|++++++.||++|+.||+.+ +++++++|..|++|.++++.....++.++.
T Consensus 1099 a~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g-~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~ 1177 (1391)
T KOG0065|consen 1099 AQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVG-HNVQGLQNAMGAAYMATVFSGPNNNQLQQPA 1177 (1391)
T ss_pred chhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecC-CcHHHHHHHHHHHHHHHHHhhhhhhhhhhhH
Confidence 999999999999999999999999999999999999999999999987 578999999999998888877766665554
Q ss_pred HHHHhhHHHhHhcCCCCChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCCch---HHHHHHHHHHHHHHHHHHHHHHH
Q 003437 599 FIQERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSS---LLNFWMILFASLITTNAYVMLVS 675 (820)
Q Consensus 599 f~~eR~vf~RE~~~g~Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~---f~~f~l~l~l~~~~~~s~~~~i~ 675 (820)
+..||.+++||+++|+|++.+|++|.+++|+|+.++++++|.+|+|||+||..+ |+.||++++++.+.-+++|+++.
T Consensus 1178 v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~ 1257 (1391)
T KOG0065|consen 1178 VATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLV 1257 (1391)
T ss_pred HhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888889999999999999999999999999999999999999999999864 67788888888889999999999
Q ss_pred HhcchHHHHHHHHHHHHHHHHHhccceecCCCCCcceeehhccChhhHHHHHHHHhhcCCC--ccccCCCCCCCCCCCcc
Q 003437 676 ALVPSYIAGYAVVIATTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTNEFKGK--ECYNGAPGDLSPGPLGE 753 (820)
Q Consensus 676 a~~ps~~~a~~v~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~nef~~~--~c~~~~~~~~~p~p~~~ 753 (820)
+++||.++|..+.+.+..++.+|+||++|++.||.||+|+||+||+.|..++++..++++. .|.........| |.|+
T Consensus 1258 s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~p-p~g~ 1336 (1391)
T KOG0065|consen 1258 SLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDP-PSGQ 1336 (1391)
T ss_pred HhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCC-CCCc
Confidence 9999999999999999999999999999999999999999999999999999999999988 676544444444 6777
Q ss_pred ccccccc-----------cccccccCCCccc-chHHHHHHcCCCCcchHHHHHHH
Q 003437 754 VKLSKLH-----------NTTAALLRPDCTL-IGEDIVYSMDIQIENIWFDILIL 796 (820)
Q Consensus 754 ~~~~~~~-----------~~~~~~~~~~c~~-~G~~~L~~~g~~~~~~w~~~~il 796 (820)
+|.+++- +......+..|++ .++++|..+++.+.+.|+|+||.
T Consensus 1337 tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrnfgi~ 1391 (1391)
T KOG0065|consen 1337 TCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNFWRNFGIF 1391 (1391)
T ss_pred CHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHHHHhhccC
Confidence 7777542 1112122336765 79999999999999999999873
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-88 Score=808.29 Aligned_cols=591 Identities=28% Similarity=0.438 Sum_probs=488.9
Q ss_pred cccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCceEEEECCEeCCCccccceEEEEccCCCCCCCCCH
Q 003437 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG-SLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTV 149 (820)
Q Consensus 71 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~-~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV 149 (820)
...+|+|+|+.++||+++.++||+||||||||++|+|-+... ...|+|.+||.+.+....++.++|+.|+|.|+|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 346999999999999999999999999999999999987432 2468999999998765557788999999999999999
Q ss_pred HHHHHHHHHhcCCCC----CCHHHHHH-HHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 003437 150 FETFMFAAEVRLPPS----ISRDEKKK-RVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDE 224 (820)
Q Consensus 150 ~e~l~~~~~~~~~~~----~~~~~~~~-~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDE 224 (820)
+|+|.|+++++.+.. .++.++.. ..+.+++.+||++|+||++|++..||+||||||||++|.+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 999999999987632 33334332 6778999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchhhhhhccCCCCCCCCCh
Q 003437 225 PTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFGRTVPDGENS 303 (820)
Q Consensus 225 PtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~ 303 (820)
+|+|||+.++.++++.||++++ .+.|+++++|||+.+++++||+|++|++|+++|+||.+++++||+++|+.||+++++
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ 366 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGT 366 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCH
Confidence 9999999999999999999997 599999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccCCCCceecccCCCCCccccCCCCCCCCCCCCccccchhhcccccccccCCCCCCCCCCCccccC
Q 003437 304 LEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFPKIPRTPASRSKHAISLRSQAFSFSTGNMTPGANSTQFDYY 383 (820)
Q Consensus 304 ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (820)
|||+.++++..++..+ +..... ..+.++
T Consensus 367 ADfLt~vts~k~~~~~--------~~~~~~----------~~~~~~---------------------------------- 394 (1391)
T KOG0065|consen 367 ADFLTEVTSKKDQEQY--------WNKRSK----------PYPYTS---------------------------------- 394 (1391)
T ss_pred HHHHHHhhcCcccccc--------ccccCC----------CcccCC----------------------------------
Confidence 9999999874322211 000000 000000
Q ss_pred CCCCCchHHHHHHHhhhhccccccccccccchhhhhhhhhcccchhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 003437 384 DDDDDDDEEFDKSLERKTAATPIINMQSGAYNNRLASQFYKDFSVWLYHGVVGTPRRRPSWTPARTPGRTPAKTPISGAR 463 (820)
Q Consensus 384 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (820)
.+++.+.+..... +. ++. .+ ++
T Consensus 395 ------~~ef~~~~~~s~~-----------~~-~l~----~~---------------------------------l~--- 416 (1391)
T KOG0065|consen 395 ------VSEFAEYFLNSED-----------YA-KLK----KE---------------------------------LS--- 416 (1391)
T ss_pred ------HHHHHHHHhcchh-----------hH-HHH----HH---------------------------------hc---
Confidence 0222222211100 00 000 00 00
Q ss_pred cccccccCCCCCCCCCCCCCCccccCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCcHHHHHHHHHHhhHHHhhcChH
Q 003437 464 SFVSGEYYSTPQQNPSRLKTPVVFSTSTDPYAPSYEQELEDMEEKVLDEPDHGPKFANPWLREVAVLSWRTALNVIRTPE 543 (820)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rdp~ 543 (820)
.+..+ + +........++|..++|.|++.|++|.|+.+.||..
T Consensus 417 ---------~~~~~----------~-------------------k~~~~al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~ 458 (1391)
T KOG0065|consen 417 ---------KPYDK----------S-------------------KKHKAALVSSKYSVPYWEQVKACTIREFLLMKRNYF 458 (1391)
T ss_pred ---------chhhh----------h-------------------hccchhhcCCceeccHHHHHHHHHHHHHHHHhCCce
Confidence 00000 0 000000114578899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHhhHHHhHhcCCCCChhHHHHH
Q 003437 544 LFLSREIVFAVMALILSSLFKNLSHHDFKTINRLLNFYIFAVCLVFFSSNDAVPTFIQERFIFIRETSHNAYRASSYVVS 623 (820)
Q Consensus 544 ~~~~r~~~~i~~~lliG~lf~~l~~~~~~~~~~~~g~~ff~~~~~~~~~~~~i~~f~~eR~vf~RE~~~g~Y~~~aY~la 623 (820)
++..+.++.+++|+++|++|++.+..+..+.+.+.|++||++++.+|.++++++..++.||||+|||...+|+||||.++
T Consensus 459 ~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY~p~A~al~ 538 (1391)
T KOG0065|consen 459 YYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFYPPWAEALA 538 (1391)
T ss_pred EEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccccChHHHHHH
Confidence 99999999999999999999998734667899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHhHHhhhhhhccCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcc
Q 003437 624 SLLVYLPFFGIQGLTFAAITKLLLKLHS---SLLNFWMILFASLITTNAYVMLVSALVPSYIAGYAVVIATTALFFLTCG 700 (820)
Q Consensus 624 ~~l~elP~~~~~~~if~~i~Y~m~Gl~~---~f~~f~l~l~l~~~~~~s~~~~i~a~~ps~~~a~~v~~~~~~~~~lf~G 700 (820)
.+++++|+.++.+++|.+|+||++||.+ +||+|+++++++..++.+++++++++++++..|+.++.+.++.+.+++|
T Consensus 539 s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~G 618 (1391)
T KOG0065|consen 539 STLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGG 618 (1391)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHcc
Confidence 9999999999999999999999999986 4888899999999999999999999999999999999999999999999
Q ss_pred ceecCCCCCcceeehhccChhhHHHHHHHHhhcCCCccccCCCCCCCCCCCccccccccccccccccC-C-CcccchHHH
Q 003437 701 FFLKRGHIPPYWRWLHYISAIKYPFEALLTNEFKGKECYNGAPGDLSPGPLGEVKLSKLHNTTAALLR-P-DCTLIGEDI 778 (820)
Q Consensus 701 f~i~~~~iP~~~~W~~yiSp~~Ya~eal~~nef~~~~c~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~-~-~c~~~G~~~ 778 (820)
|+||.++||+||+|++||||+.|+||++++|||++++..+. |.+|+|++.+ ..+..|.+.+. . .-.+.|+++
T Consensus 619 f~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~---p~gp~y~n~~---~~~~~c~~~~~~~G~~~v~g~~~ 692 (1391)
T KOG0065|consen 619 FVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCS---PSGPAYDNIS---IENKVCAATGATLGNDYVSGRDY 692 (1391)
T ss_pred eeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCC---CCCCcccccc---cccccchhhccccCceEEecccc
Confidence 99999999999999999999999999999999999854331 5566665532 11122211000 0 112357777
Q ss_pred H-HHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 003437 779 V-YSMDIQIENIWFDILILLAWGVLYRLFFYLVLRFYS 815 (820)
Q Consensus 779 L-~~~g~~~~~~w~~~~il~~~~~~~~~l~~l~L~~~~ 815 (820)
+ .+|++++.|.|+|+||++||.++|.++..+++.|.+
T Consensus 693 l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~ 730 (1391)
T KOG0065|consen 693 LKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLK 730 (1391)
T ss_pred cccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence 7 467788899999999999999999999999999886
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-53 Score=423.79 Aligned_cols=220 Identities=33% Similarity=0.548 Sum_probs=200.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+|+|+. ..+|+|||++|++||+++|+||||||||||||||+|+.. +++|+|.++|.++.
T Consensus 2 mi~i~~l~K~fg~------------~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~ 67 (240)
T COG1126 2 MIEIKNLSKSFGD------------KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVG 67 (240)
T ss_pred eEEEEeeeEEeCC------------eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEecc
Confidence 4899999999964 359999999999999999999999999999999999885 46899999998764
Q ss_pred C----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 T----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
. ...|+.+|+|||+.+|||++||.||+.++...- .+.++++.++++.++|+++||.+.+|.+.. +||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYPA-----QLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----ccCcH
Confidence 3 236788999999999999999999999986432 246889999999999999999999888764 79999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||+|||||+.+|+++++|||||+|||+...++++.+++|+++|.|.|++||++.. +.+.+|||++|++|+++..|+
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~G~iie~g~ 219 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQGKIIEEGP 219 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeCCEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999997 788999999999999999999
Q ss_pred ccchhh
Q 003437 283 PVALPA 288 (820)
Q Consensus 283 ~~~~~~ 288 (820)
|+++..
T Consensus 220 p~~~f~ 225 (240)
T COG1126 220 PEEFFD 225 (240)
T ss_pred HHHHhc
Confidence 987643
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-50 Score=419.90 Aligned_cols=224 Identities=34% Similarity=0.505 Sum_probs=202.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
+|+++||+|.|..+. .....+|+|||++|++||+++|+|.||||||||+|+|.++.. |++|+|.++|+++.
T Consensus 1 mI~l~~vsK~~~~~~-------~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~ 71 (339)
T COG1135 1 MIELENVSKTFGQTG-------TGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLT 71 (339)
T ss_pred CeEEEeeeeeeccCC-------CCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecc
Confidence 389999999997531 123469999999999999999999999999999999999875 56899999998876
Q ss_pred Cc------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 003437 127 TS------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS 200 (820)
Q Consensus 127 ~~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS 200 (820)
.. ..|+.+|++||+..|+...||.||+.|++++. +.++++.++||.++|+.+||++.++.+. .+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~yP-----~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADRYP-----AQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhccCc-----hhcC
Confidence 42 35778999999999999999999999999876 4789999999999999999999887775 4799
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
|||||||+|||||+.+|+|||+|||||+|||.+...|+++|+++.++ |.||+++||+++ .+.++||||.+|++|++++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~G~lvE 222 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQGRLVE 222 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeCCEEEE
Confidence 99999999999999999999999999999999999999999999865 999999999998 4899999999999999999
Q ss_pred EcCccchhh
Q 003437 280 MGSPVALPA 288 (820)
Q Consensus 280 ~G~~~~~~~ 288 (820)
.|+..++..
T Consensus 223 ~G~v~~vF~ 231 (339)
T COG1135 223 EGTVSEVFA 231 (339)
T ss_pred eccHHHhhc
Confidence 999988754
No 12
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-49 Score=401.68 Aligned_cols=218 Identities=29% Similarity=0.496 Sum_probs=200.2
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||||.|.+ +.+++|+|++|++||+++++|||||||||+||+|.+++. +++|+|++||+++..
T Consensus 2 I~~~nvsk~y~~------------~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~~ 67 (309)
T COG1125 2 IEFENVSKRYGN------------KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDISD 67 (309)
T ss_pred ceeeeeehhcCC------------ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeeccc
Confidence 899999999963 359999999999999999999999999999999999985 468999999999875
Q ss_pred c---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCCCCCCCChH
Q 003437 128 S---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS--ATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 128 ~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~ig~~~~~~LSGG 202 (820)
. ..|+.+|||-|...|||++||.||+.+...+. ++++++.+++++++|+.+||++ +++ ++|++||||
T Consensus 68 ~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~-----RyP~eLSGG 139 (309)
T COG1125 68 LDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYAD-----RYPHELSGG 139 (309)
T ss_pred CCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhh-----cCchhcCcc
Confidence 3 46888999999999999999999999988765 5788999999999999999975 444 456789999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|+|||.+||||+.+|++|++|||+++|||.++.++.+.++++.++ |+|||++|||.+ ++..++|||.+|++|+++..+
T Consensus 140 QQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~G~i~Q~~ 218 (309)
T COG1125 140 QQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDAGEIVQYD 218 (309)
T ss_pred hhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecCCeEEEeC
Confidence 999999999999999999999999999999999999999999875 999999999998 588999999999999999999
Q ss_pred Cccchhh
Q 003437 282 SPVALPA 288 (820)
Q Consensus 282 ~~~~~~~ 288 (820)
+|++++.
T Consensus 219 ~P~~il~ 225 (309)
T COG1125 219 TPDEILA 225 (309)
T ss_pred CHHHHHh
Confidence 9999864
No 13
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.7e-48 Score=390.09 Aligned_cols=222 Identities=34% Similarity=0.527 Sum_probs=200.8
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...|++++|+++|+. +.|++|||++|++||+++||||||+|||||||+|.|+++| ++|+|+++|++
T Consensus 6 ~~~I~vr~v~~~fG~------------~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P--~~GeI~i~G~~ 71 (263)
T COG1127 6 EPLIEVRGVTKSFGD------------RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--DKGEILIDGED 71 (263)
T ss_pred cceEEEeeeeeecCC------------EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC--CCCeEEEcCcc
Confidence 456999999999964 4599999999999999999999999999999999999864 67999999999
Q ss_pred CCCc------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCC
Q 003437 125 VTTS------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEGRR 197 (820)
Q Consensus 125 ~~~~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~ 197 (820)
+... ..++++|++||+..||..+||.||+.|..+-+ ...+++..++.+..-|+.+||... ++.+ |.
T Consensus 72 i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----Ps 144 (263)
T COG1127 72 IPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAADLY-----PS 144 (263)
T ss_pred hhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhhhC-----ch
Confidence 8641 35677999999999999999999999987654 347888889999999999999876 5544 56
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
+|||||+||++|||||+.+|++||+||||+||||.++..+.+++++|.+. |.|+|++|||.+. ++.+|||+++|.+|+
T Consensus 145 ELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s-~~~i~Drv~~L~~gk 223 (263)
T COG1127 145 ELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDS-LLTIADRVAVLADGK 223 (263)
T ss_pred hhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHH-HHhhhceEEEEeCCE
Confidence 89999999999999999999999999999999999999999999999875 9999999999985 899999999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
|++.|+++++.+
T Consensus 224 v~~~Gt~~el~~ 235 (263)
T COG1127 224 VIAEGTPEELLA 235 (263)
T ss_pred EEEeCCHHHHHh
Confidence 999999998864
No 14
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.2e-47 Score=392.45 Aligned_cols=210 Identities=33% Similarity=0.522 Sum_probs=184.3
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
++++||++.|..+. ....+|+++|++|++||+++|+|||||||||||++|+|+..| ++|+|.++|+++..
T Consensus 2 i~~~~v~k~y~~~~--------~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~ 71 (226)
T COG1136 2 IELKNVSKIYGLGG--------EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTK 71 (226)
T ss_pred cEEeeeEEEeccCC--------cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCc
Confidence 67999999996532 124699999999999999999999999999999999999864 78999999998864
Q ss_pred c-------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-ccccCCCCCCC
Q 003437 128 S-------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATH-TYIGNEGRRGV 199 (820)
Q Consensus 128 ~-------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-~~ig~~~~~~L 199 (820)
. .+++.+|||||+..|+|++||+||+.+++.+.. .+..+.+++++++++.+||++..+ +++ .+|
T Consensus 72 l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----~eL 143 (226)
T COG1136 72 LSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLKKKP-----SEL 143 (226)
T ss_pred CCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhccCCc-----hhc
Confidence 2 245679999999999999999999999876652 333366788999999999997665 544 479
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
||||||||+|||||+.+|++||+||||.+||+.++.+|+++|++++++ |+|||++|||+. +..+|||++.|.+|++
T Consensus 144 SGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 144 SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADRVIELKDGKI 220 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCEEEEEeCCee
Confidence 999999999999999999999999999999999999999999999875 999999999986 6678999999999984
No 15
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.2e-47 Score=414.81 Aligned_cols=223 Identities=34% Similarity=0.563 Sum_probs=200.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.++++||++.|++ .+.+|+||||+|++||++||+||||||||||+|+|+|++.| ++|+|.++|.+..
T Consensus 4 ~i~~~~l~k~~~~-----------~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~~ 70 (293)
T COG1131 4 VIEVRNLTKKYGG-----------DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVV 70 (293)
T ss_pred eeeecceEEEeCC-----------CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeCc
Confidence 4889999999962 13599999999999999999999999999999999999864 6899999999886
Q ss_pred C--ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 127 T--SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 127 ~--~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
. ...++.+||++|++.+++.+||+|||.|.+.++.. +....+++++++++.+||.+..+++++ +||+|||
T Consensus 71 ~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~---~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~lS~G~k 142 (293)
T COG1131 71 KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGL---SKEEAEERIEELLELFGLEDKANKKVR-----TLSGGMK 142 (293)
T ss_pred cCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCC---ChhHHHHHHHHHHHHcCCchhhCcchh-----hcCHHHH
Confidence 5 34577899999999999999999999999998743 224567789999999999986666664 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTG-SIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
|||+||+||+++|++|||||||+|||+.++.++.++|++++++| +||+++||+++. +..+||+|++|++|++++.|++
T Consensus 143 qrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e-~~~~~d~v~il~~G~~~~~g~~ 221 (293)
T COG1131 143 QRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEE-AEELCDRVIILNDGKIIAEGTP 221 (293)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHH-HHHhCCEEEEEeCCEEEEeCCH
Confidence 99999999999999999999999999999999999999999987 899999999984 8889999999999999999998
Q ss_pred cchhhhhh
Q 003437 284 VALPAHLA 291 (820)
Q Consensus 284 ~~~~~~f~ 291 (820)
+++...+.
T Consensus 222 ~~l~~~~~ 229 (293)
T COG1131 222 EELKEKFG 229 (293)
T ss_pred HHHHHhhc
Confidence 88766654
No 16
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=7.7e-48 Score=401.34 Aligned_cols=222 Identities=34% Similarity=0.496 Sum_probs=196.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||||+|+|+++| .+|+|+++|+++.
T Consensus 2 ~L~~~~ls~~y~~------------~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p--~~G~V~l~g~~i~ 67 (258)
T COG1120 2 MLEVENLSFGYGG------------KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP--KSGEVLLDGKDIA 67 (258)
T ss_pred eeEEEEEEEEECC------------eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCCchh
Confidence 4899999999964 3599999999999999999999999999999999999864 5799999999986
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPP-SISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
. ....+.++||||.......+||+|.+.++..-+... ....++.++.++++|+.+|+.+.+++.+. +||||
T Consensus 68 ~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSGG 142 (258)
T COG1120 68 SLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD-----ELSGG 142 (258)
T ss_pred hcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc-----ccChh
Confidence 4 345678999999998888899999999885422111 11234455689999999999999999886 59999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|||||.|||||+++|++|+|||||+.||...+.+++++++++++ +|.|||+++||++. +.++||++++|++|+++..|
T Consensus 143 erQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~G~i~a~G 221 (258)
T COG1120 143 ERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKDGKIVAQG 221 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEECCeEEeec
Confidence 99999999999999999999999999999999999999999995 59999999999986 78899999999999999999
Q ss_pred Cccchhh
Q 003437 282 SPVALPA 288 (820)
Q Consensus 282 ~~~~~~~ 288 (820)
+|++++.
T Consensus 222 ~p~evlT 228 (258)
T COG1120 222 TPEEVLT 228 (258)
T ss_pred CcchhcC
Confidence 9988763
No 17
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-48 Score=418.50 Aligned_cols=220 Identities=32% Similarity=0.498 Sum_probs=200.8
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++ ..+|+|+|++|++||+++|+||||||||||||+|+|+.. +++|+|.++|+++
T Consensus 4 ~~l~i~~v~k~yg~------------~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i 69 (352)
T COG3842 4 PALEIRNVSKSFGD------------FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDI 69 (352)
T ss_pred ceEEEEeeeeecCC------------eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 45999999999963 359999999999999999999999999999999999985 5689999999999
Q ss_pred CCc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 126 TTS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 126 ~~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
+.. ..+|.+|+|||+..|||+|||+||+.|+++++. ...+++.+++|+++|+.++|++.+++++ .+||||||
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~--~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQq 142 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRK--KLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGGQQ 142 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcC--CCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChHHH
Confidence 753 357889999999999999999999999988542 3456778899999999999999887776 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
|||+|||||+.+|++||||||.|+||..-+.++...|+++.+ .|.|.|++|||.+ ++..++|||.+|++|+|...|+|
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~G~I~Q~gtP 221 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMNDGRIEQVGTP 221 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccCCceeecCCH
Confidence 999999999999999999999999999999999999999986 4999999999987 58899999999999999999999
Q ss_pred cchh
Q 003437 284 VALP 287 (820)
Q Consensus 284 ~~~~ 287 (820)
+++.
T Consensus 222 ~eiY 225 (352)
T COG3842 222 EEIY 225 (352)
T ss_pred HHHh
Confidence 9884
No 18
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-48 Score=388.43 Aligned_cols=224 Identities=30% Similarity=0.489 Sum_probs=197.0
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.|+++ +++|+|||++|++||+++|+||||||||||||+|+|+.. +++|+|.+||.++
T Consensus 2 ~~i~~~nl~k~yp~~-----------~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 2 MMIEVKNLSKTYPGG-----------HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred ceEEEeeeeeecCCC-----------ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 359999999999643 469999999999999999999999999999999999874 5689999999887
Q ss_pred CCc------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 003437 126 TTS------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP-----PSISRDEKKKRVYELLDQLGLRSATHTYIGNE 194 (820)
Q Consensus 126 ~~~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~-----~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~ 194 (820)
... .+++.+||++|++.|.+.+||.+|+..+..-+.+ -++..++.+.++-+.|+++||.+.+.++.+
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-- 146 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-- 146 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc--
Confidence 542 3567899999999999999999999987543321 122334556778899999999999888876
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
+|||||+|||+|||||+.+|+++|.|||+++|||.++..||+.|+++++ +|.|||++.|+.+. +.++|||++-|+
T Consensus 147 ---~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~ 222 (258)
T COG3638 147 ---TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK 222 (258)
T ss_pred ---cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec
Confidence 5999999999999999999999999999999999999999999999986 69999999999986 889999999999
Q ss_pred CCeEEEEcCccchhh
Q 003437 274 RGRLVYMGSPVALPA 288 (820)
Q Consensus 274 ~G~iv~~G~~~~~~~ 288 (820)
+|+++|.|+++++.+
T Consensus 223 ~G~ivfDg~~~el~~ 237 (258)
T COG3638 223 AGRIVFDGPASELTD 237 (258)
T ss_pred CCcEEEeCChhhhhH
Confidence 999999999988643
No 19
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-47 Score=413.05 Aligned_cols=219 Identities=33% Similarity=0.531 Sum_probs=202.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++. .+|+|+|++|++||+++|+||||||||||||+|||+.. +++|+|.|+|++++
T Consensus 3 ~i~l~~v~K~yg~~------------~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~vt 68 (338)
T COG3839 3 ELELKNVRKSFGSF------------EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVT 68 (338)
T ss_pred EEEEeeeEEEcCCc------------eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECC
Confidence 59999999999642 18999999999999999999999999999999999985 56899999999998
Q ss_pred C-ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 127 T-SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 127 ~-~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
. ...+|.+++|||+..|||+|||+||+.|+++++ +.++++.+++|+++.+.|+|++.+|+++. +|||||||
T Consensus 69 ~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----~LSGGQrQ 140 (338)
T COG3839 69 DLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----QLSGGQRQ 140 (338)
T ss_pred CCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCcc-----cCChhhHH
Confidence 6 345678999999999999999999999999876 46788999999999999999999988864 79999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
||+|||||+++|+++++|||+|.||...+..+...|+++.++ |.|+|.+|||.. ++..++|||.+|++|+|...|+|.
T Consensus 141 RVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~G~i~Q~g~p~ 219 (338)
T COG3839 141 RVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMNDGRIQQVGTPL 219 (338)
T ss_pred HHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeCCeeeecCChH
Confidence 999999999999999999999999999999999999999875 999999999987 588899999999999999999999
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 220 ely~ 223 (338)
T COG3839 220 ELYE 223 (338)
T ss_pred HHhh
Confidence 8854
No 20
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-47 Score=388.47 Aligned_cols=204 Identities=36% Similarity=0.540 Sum_probs=185.1
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.+++++++++|.. ..+|+|+|++|.+||+++|+||||||||||||+|+|+.. +++|+|.++|+++.
T Consensus 3 ~l~i~~v~~~f~~------------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v~ 68 (248)
T COG1116 3 LLEIEGVSKSFGG------------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPVT 68 (248)
T ss_pred eEEEEeeEEEeCc------------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCcccC
Confidence 4899999999964 359999999999999999999999999999999999985 46899999999984
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
. ....++||||++.|+|.+||.||+.++...+. .++++.+++++++|+.+||.+..|++. ++||||||||
T Consensus 69 ~--p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~P-----~qLSGGMrQR 138 (248)
T COG1116 69 G--PGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKYP-----HQLSGGMRQR 138 (248)
T ss_pred C--CCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcCc-----cccChHHHHH
Confidence 3 34668999999999999999999999988652 567777889999999999999887775 5799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
|+|||||+.+|++|+||||+++||..++..+.+.|.++.+ .++||+++|||.++ +..++|||++|.++
T Consensus 139 VaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~E-Av~LsdRivvl~~~ 207 (248)
T COG1116 139 VAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDE-AVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH-HHhhhCEEEEecCC
Confidence 9999999999999999999999999999999999999975 59999999999985 67799999999984
No 21
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.7e-47 Score=392.28 Aligned_cols=220 Identities=32% Similarity=0.553 Sum_probs=191.8
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.|... ++|+||||++++|++++|+||||||||||+|+|.|+++ |.+|+|.++|.+.
T Consensus 3 ~~i~v~nl~v~y~~~------------~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 3 PMIEVENLTVSYGNR------------PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred cEEEEeeeEEEECCE------------eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 359999999999632 49999999999999999999999999999999999885 4689999999988
Q ss_pred CCccccceEEEEccCC---CCCCCCCHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 003437 126 TTSYMKMVSSYVMQDD---QLFPMLTVFETFMFAAEVRLP--PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS 200 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~---~l~~~lTV~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS 200 (820)
.....+.++|||||.. .-|| +||+|.+..+..-+.. ...++ +.++.++++|+.+|+.+.+|+.+| .||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~-~d~~~v~~aL~~Vgm~~~~~r~i~-----~LS 141 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNK-KDKEKVDEALERVGMEDLRDRQIG-----ELS 141 (254)
T ss_pred cccccCCeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccH-HHHHHHHHHHHHcCchhhhCCccc-----ccC
Confidence 6544457899999954 3466 5999999987433221 11233 347889999999999999999998 599
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
|||+|||.|||||+++|++|+|||||+|+|+.++..++++|++++++|+||++++||++. +.++||+|+.| ++++++.
T Consensus 142 GGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~-v~~~~D~vi~L-n~~~~~~ 219 (254)
T COG1121 142 GGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGL-VMAYFDRVICL-NRHLIAS 219 (254)
T ss_pred cHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHH-hHhhCCEEEEE-cCeeEec
Confidence 999999999999999999999999999999999999999999999899999999999985 88999999999 6678999
Q ss_pred cCccchhh
Q 003437 281 GSPVALPA 288 (820)
Q Consensus 281 G~~~~~~~ 288 (820)
|+++++.+
T Consensus 220 G~~~~~~~ 227 (254)
T COG1121 220 GPPEEVLT 227 (254)
T ss_pred cChhhccC
Confidence 99988754
No 22
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-47 Score=374.77 Aligned_cols=220 Identities=34% Similarity=0.504 Sum_probs=203.2
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|++++|+++|+.. .++++||||+++.||+++|+|||||||||+||+|++++. |++|+|+++|.+...
T Consensus 2 l~v~~l~K~y~~~-----------v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~ 68 (245)
T COG4555 2 LEVTDLTKSYGSK-----------VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVR 68 (245)
T ss_pred eeeeehhhhccCH-----------HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeeccccc
Confidence 7899999999653 348999999999999999999999999999999999996 468999999998754
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 128 --SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 128 --~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
...++.+|.++.+..++..||++|||.|.+++. ++.+.+.+++++++.+.|+|.+++|+.+| ++|.|+||
T Consensus 69 ~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kq 140 (245)
T COG4555 69 DPSFVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQ 140 (245)
T ss_pred ChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHH
Confidence 356888999997788999999999999999986 46788889999999999999999999998 59999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA 285 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 285 (820)
||+|||||+++|++++|||||||||..+...+.+.++++.++|++||++||.++ ++..+||+|++|++|++|+.|++++
T Consensus 141 kV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~Gevv~~gs~~~ 219 (245)
T COG4555 141 KVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHKGEVVLEGSIEA 219 (245)
T ss_pred HHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEecCcEEEcCCHHH
Confidence 999999999999999999999999999999999999999999999999999997 5899999999999999999999987
Q ss_pred hhhh
Q 003437 286 LPAH 289 (820)
Q Consensus 286 ~~~~ 289 (820)
+...
T Consensus 220 l~~r 223 (245)
T COG4555 220 LDAR 223 (245)
T ss_pred HHHH
Confidence 7643
No 23
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=6.7e-47 Score=368.16 Aligned_cols=213 Identities=32% Similarity=0.530 Sum_probs=194.9
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+|+||++.|+.. +.+|+||||+|++||++-|+||||||||||||+|.+... ++.|+|+++|+++..
T Consensus 2 I~f~~V~k~Y~~g-----------~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~~ 68 (223)
T COG2884 2 IRFENVSKAYPGG-----------REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLSR 68 (223)
T ss_pred eeehhhhhhcCCC-----------chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeeccc
Confidence 8899999999753 459999999999999999999999999999999999775 568999999999864
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 128 S------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 128 ~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
. ..|+++|+||||..|+++.||.||+.|+.+.. +.++++.+++|.++|+.+||.+.++... .+|||
T Consensus 69 l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----~~LSG 140 (223)
T COG2884 69 LKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARALP-----SQLSG 140 (223)
T ss_pred ccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcCc-----cccCc
Confidence 2 36788999999999999999999999998876 4678899999999999999999887765 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
||||||+||||++.+|++||.||||.+|||..+.+|++++.++...|+||+++|||.+. +.++-.|++.|++|+++...
T Consensus 141 GEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l-v~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 141 GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL-VNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred hHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH-HHhccCcEEEEeCCEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999874 77788899999999999765
Q ss_pred C
Q 003437 282 S 282 (820)
Q Consensus 282 ~ 282 (820)
.
T Consensus 220 ~ 220 (223)
T COG2884 220 S 220 (223)
T ss_pred c
Confidence 4
No 24
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-47 Score=393.64 Aligned_cols=222 Identities=31% Similarity=0.501 Sum_probs=198.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCE---
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK--- 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~--- 123 (820)
.|.++|+++.++. ..+++|||+.|+.||++||+|||||||||||++|+|++. +++|.|.+||+
T Consensus 2 ~i~i~~~~~~~~~------------~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~ 67 (345)
T COG1118 2 SIRINNVKKRFGA------------FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLF 67 (345)
T ss_pred ceeehhhhhhccc------------ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEecc
Confidence 4888899988854 348999999999999999999999999999999999985 46899999999
Q ss_pred eCCC-ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 124 PVTT-SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 124 ~~~~-~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
+.+. ....+++|||+|+..+|++|||.||+.|+++++ ....++.+.+.++.++|+.+.|++..+++ |.+||||
T Consensus 68 D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGG 141 (345)
T COG1118 68 DVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGG 141 (345)
T ss_pred chhccchhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChH
Confidence 5544 234577999999999999999999999999877 23346778889999999999999876655 5689999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|||||++||||+..|++|+||||+++||..-+.++.+.|+++.++ |.|++++|||++ ++.++||||++|++|+|...|
T Consensus 142 QrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg 220 (345)
T COG1118 142 QRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVG 220 (345)
T ss_pred HHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeC
Confidence 999999999999999999999999999999999999999999876 999999999998 589999999999999999999
Q ss_pred Cccchhhh
Q 003437 282 SPVALPAH 289 (820)
Q Consensus 282 ~~~~~~~~ 289 (820)
+++++.++
T Consensus 221 ~p~ev~~~ 228 (345)
T COG1118 221 PPDEVYDH 228 (345)
T ss_pred CHHHHhcC
Confidence 99998643
No 25
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=3.3e-45 Score=402.99 Aligned_cols=221 Identities=29% Similarity=0.468 Sum_probs=195.7
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|..+. ..+.+|+||||+|++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++..
T Consensus 2 I~~~~lsk~y~~~~--------~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~~ 71 (343)
T TIGR02314 2 IKLSNITKVFHQGT--------KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLTT 71 (343)
T ss_pred EEEEEEEEEECCCC--------cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCc
Confidence 89999999995321 12359999999999999999999999999999999999985 468999999999864
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 128 S------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 128 ~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
. ..++.+||+||+..+++.+||+||+.++.... +.++++.++++.++++.+||.+..|++++ +|||
T Consensus 72 ~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~~-----~LSg 143 (343)
T TIGR02314 72 LSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYPS-----NLSG 143 (343)
T ss_pred CCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCH
Confidence 2 13567999999999999999999999986543 24566777889999999999988877764 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
||||||+|||||+.+|++|||||||++||+.++..++++|++++++ |.|||++||+++. +.++||++++|++|++++.
T Consensus 144 GqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~-v~~~~d~v~vl~~G~iv~~ 222 (343)
T TIGR02314 144 GQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDV-VKRICDCVAVISNGELIEQ 222 (343)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999875 9999999999974 7889999999999999999
Q ss_pred cCccchh
Q 003437 281 GSPVALP 287 (820)
Q Consensus 281 G~~~~~~ 287 (820)
|+++++.
T Consensus 223 g~~~~v~ 229 (343)
T TIGR02314 223 GTVSEIF 229 (343)
T ss_pred cCHHHHH
Confidence 9988774
No 26
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=3.7e-45 Score=398.59 Aligned_cols=221 Identities=29% Similarity=0.465 Sum_probs=197.5
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++ +.+|+||||+|++||+++|+||||||||||+|+|+|++. +++|+|.++|.++
T Consensus 6 ~~i~i~~l~k~~~~------------~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~ 71 (306)
T PRK13537 6 APIDFRNVEKRYGD------------KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPV 71 (306)
T ss_pred ceEEEEeEEEEECC------------eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEec
Confidence 35999999999953 249999999999999999999999999999999999885 4689999999998
Q ss_pred CCc--cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 126 TTS--YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 126 ~~~--~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
... ..++.+|||+|++.+++.+||+||+.+.+.++ +.+..+..++++++++.++|.+..++.++ +|||||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 143 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVG-----ELSGGM 143 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchh-----hCCHHH
Confidence 542 34577999999999999999999999877654 23455566788999999999988888875 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
||||+||+||+++|++|||||||+|||+.++..+.++|++++++|+|||++||+++ ++.++||+|++|++|++++.|++
T Consensus 144 ~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~ 222 (306)
T PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAP 222 (306)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999878999999999998 48889999999999999999999
Q ss_pred cchhhh
Q 003437 284 VALPAH 289 (820)
Q Consensus 284 ~~~~~~ 289 (820)
+++...
T Consensus 223 ~~l~~~ 228 (306)
T PRK13537 223 HALIES 228 (306)
T ss_pred HHHHhc
Confidence 887543
No 27
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-45 Score=373.21 Aligned_cols=222 Identities=32% Similarity=0.474 Sum_probs=192.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|+++.. ..++|++|||++.+||+++|+|+||||||||.++|+|+.+ +++|+|.++|.++.
T Consensus 3 ~l~v~nl~~~y~~~~~--------~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~~ 72 (252)
T COG1124 3 LLSVRNLSIVYGGGKF--------AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPLA 72 (252)
T ss_pred eEEEeceEEEecCCcc--------hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCcccC
Confidence 5999999999976431 1259999999999999999999999999999999999986 46899999998876
Q ss_pred Cc----cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCC
Q 003437 127 TS----YMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEGRRGV 199 (820)
Q Consensus 127 ~~----~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~L 199 (820)
.. .+.+.+.+||||+ .+.|..||++.|.-+.... +.++. ++++.++|+.+||.+. ++++ |.+|
T Consensus 73 ~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~---~~~~~--~~~i~~~L~~VgL~~~~l~R~-----P~eL 142 (252)
T COG1124 73 PKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH---GLSKS--QQRIAELLDQVGLPPSFLDRR-----PHEL 142 (252)
T ss_pred ccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC---CccHH--HHHHHHHHHHcCCCHHHHhcC-----chhc
Confidence 53 2456789999998 4899999999998887642 33333 3449999999999754 4444 5689
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
||||||||+|||||+.+|++||||||||+||+..+.+|+++|.++.+ .+.|.|+++||.+. +..+||||++|++|+++
T Consensus 143 SGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~-v~~~cdRi~Vm~~G~iv 221 (252)
T COG1124 143 SGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL-VEHMCDRIAVMDNGQIV 221 (252)
T ss_pred ChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH-HHHHhhheeeeeCCeEE
Confidence 99999999999999999999999999999999999999999999986 48999999999985 88999999999999999
Q ss_pred EEcCccchhhh
Q 003437 279 YMGSPVALPAH 289 (820)
Q Consensus 279 ~~G~~~~~~~~ 289 (820)
+.++.+++...
T Consensus 222 E~~~~~~l~~~ 232 (252)
T COG1124 222 EIGPTEELLSH 232 (252)
T ss_pred EeechhhhhcC
Confidence 99999988754
No 28
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-45 Score=365.97 Aligned_cols=234 Identities=24% Similarity=0.408 Sum_probs=201.3
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC---CCCceEEEECC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ---GSLEGSVRIDG 122 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~---~~~~G~I~i~G 122 (820)
..++++||++.|+. +.+|+|||+.|++++++|||||||||||||||++..+... ...+|+|.++|
T Consensus 6 ~~~~~~~l~~yYg~------------~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 6 PAIEVRDLNLYYGD------------KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred ceeEecceeEEECc------------hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 45999999999964 3599999999999999999999999999999999987532 23689999999
Q ss_pred EeCCCc-----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCC
Q 003437 123 KPVTTS-----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEGR 196 (820)
Q Consensus 123 ~~~~~~-----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~ 196 (820)
+++... ..|+.+|+|||.+.-|| +|++||+.|+.++.. +..++.+++|++.|+...|.+. .|++ . ...
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDrL-~-~sa 147 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDRL-H-KSA 147 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHHh-h-CCc
Confidence 998642 46888999999999999 799999999988763 3336778899999999999654 4443 2 334
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
.+|||||+||++|||||+.+|+|||||||||+|||.+...|-+++.+|+ +.-|||++||.+.. +.+..|+..++..|+
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQ-AaRvSD~taFf~~G~ 225 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQ-AARVSDYTAFFYLGE 225 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHH-HHHHhHhhhhhcccE
Confidence 5799999999999999999999999999999999999999999999998 46899999999985 788999999999999
Q ss_pred EEEEcCccchhhhhhccCCCCCCCCChHHHH
Q 003437 277 LVYMGSPVALPAHLAGFGRTVPDGENSLEYL 307 (820)
Q Consensus 277 iv~~G~~~~~~~~f~~~g~~~~~~~~~ad~~ 307 (820)
+|++|+++++.. .|..+.+.||+
T Consensus 226 LvE~g~T~~iF~--------~P~~~~TedYi 248 (253)
T COG1117 226 LVEFGPTDKIFT--------NPKHKRTEDYI 248 (253)
T ss_pred EEEEcCHHhhhc--------CccHHHHHHHh
Confidence 999999988743 35555556664
No 29
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-45 Score=402.80 Aligned_cols=220 Identities=27% Similarity=0.456 Sum_probs=196.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|.+ ++.+|+|+||++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++.
T Consensus 3 ~l~i~~l~~~~~~-----------~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 69 (356)
T PRK11650 3 GLKLQAVRKSYDG-----------KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVN 69 (356)
T ss_pred EEEEEeEEEEeCC-----------CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECC
Confidence 4899999999931 1349999999999999999999999999999999999885 46899999999986
Q ss_pred Cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 127 TS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 127 ~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
.. ..++.+|||+|++.+||++||+||+.|+...+ ..++.+..++++++++.+||++..++++. +|||||||
T Consensus 70 ~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~Q 141 (356)
T PRK11650 70 ELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKPR-----ELSGGQRQ 141 (356)
T ss_pred CCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCChh-----hCCHHHHH
Confidence 42 23567999999999999999999999987643 24566677889999999999988887765 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
||+|||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++|||+. ++..+||++++|++|+++..|+++
T Consensus 142 RvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~ 220 (356)
T PRK11650 142 RVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPV 220 (356)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHH
Confidence 999999999999999999999999999999999999999875 999999999997 488899999999999999999998
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 221 ~~~~ 224 (356)
T PRK11650 221 EVYE 224 (356)
T ss_pred HHHh
Confidence 8743
No 30
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-44 Score=399.43 Aligned_cols=219 Identities=29% Similarity=0.493 Sum_probs=196.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++.
T Consensus 6 ~l~~~~l~~~~~~------------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~ 71 (351)
T PRK11432 6 FVVLKNITKRFGS------------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDVT 71 (351)
T ss_pred EEEEEeEEEEECC------------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECC
Confidence 5999999999953 248999999999999999999999999999999999985 46899999999986
Q ss_pred Cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 127 TS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 127 ~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
.. ..++.+|||+|+..+||++||+||+.|+...+ ..++++..++++++++.+||.+..++++. .|||||||
T Consensus 72 ~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~~-----~LSgGq~Q 143 (351)
T PRK11432 72 HRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYVD-----QISGGQQQ 143 (351)
T ss_pred CCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHH
Confidence 43 23567999999999999999999999997654 24566778899999999999988777654 79999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
||+|||||+.+|++|||||||++||+.++.++.+.|+++.++ |+|+|++|||++. +..++|+|++|++|+++..|+++
T Consensus 144 RVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e-~~~laD~i~vm~~G~i~~~g~~~ 222 (351)
T PRK11432 144 RVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSE-AFAVSDTVIVMNKGKIMQIGSPQ 222 (351)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH-HHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999865 9999999999974 88899999999999999999998
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 223 ~~~~ 226 (351)
T PRK11432 223 ELYR 226 (351)
T ss_pred HHHh
Confidence 8743
No 31
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.4e-44 Score=400.47 Aligned_cols=219 Identities=32% Similarity=0.510 Sum_probs=197.1
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+|||||||||||++|+|+.+ +++|+|.++|+++.
T Consensus 4 ~l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~ 69 (353)
T TIGR03265 4 YLSIDNIRKRFGA------------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDIT 69 (353)
T ss_pred EEEEEEEEEEeCC------------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEECC
Confidence 4999999999953 248999999999999999999999999999999999885 46899999999986
Q ss_pred Cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 127 TS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 127 ~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
.. ..++.+|||+|+..+||++||+||+.|+...+ ..++++.+++++++++.+||++..++.+. +|||||||
T Consensus 70 ~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~~-----~LSgGq~Q 141 (353)
T TIGR03265 70 RLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYPG-----QLSGGQQQ 141 (353)
T ss_pred CCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCChh-----hCCHHHHH
Confidence 42 23567999999999999999999999987643 24566778899999999999998887764 79999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
||+|||||+.+|++|||||||++||+.++.++.+.|+++.++ |.|+|++|||++ ++..+||++++|++|+++..|+++
T Consensus 142 RvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~ 220 (353)
T TIGR03265 142 RVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQ 220 (353)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999875 999999999997 588899999999999999999998
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 221 ~~~~ 224 (353)
T TIGR03265 221 EIYR 224 (353)
T ss_pred HHHh
Confidence 8754
No 32
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-44 Score=379.24 Aligned_cols=218 Identities=33% Similarity=0.541 Sum_probs=190.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (235)
T cd03261 1 IELRGLTKSFGG------------RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISG 66 (235)
T ss_pred CeEEEEEEEECC------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 578999999853 249999999999999999999999999999999999885 468999999998753
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 128 S------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 128 ~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
. ..++.++||+|++.+++.+||+||+.+...... ..+.++..+++.++++.+||.+..++.++ .|||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 139 (235)
T cd03261 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYPA-----ELSG 139 (235)
T ss_pred cChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCH
Confidence 2 235678999999999999999999998754321 23455556788999999999887777665 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|+++. +..+||++++|++|++++.
T Consensus 140 G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~-~~~~~d~v~~l~~G~i~~~ 218 (235)
T cd03261 140 GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDT-AFAIADRIAVLYDGKIVAE 218 (235)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH-HHHhcCEEEEEECCeEEEe
Confidence 9999999999999999999999999999999999999999999874 8999999999984 7889999999999999999
Q ss_pred cCccchh
Q 003437 281 GSPVALP 287 (820)
Q Consensus 281 G~~~~~~ 287 (820)
|+++++.
T Consensus 219 g~~~~~~ 225 (235)
T cd03261 219 GTPEELR 225 (235)
T ss_pred cCHHHHc
Confidence 9876653
No 33
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.5e-45 Score=378.48 Aligned_cols=220 Identities=30% Similarity=0.489 Sum_probs=197.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.++++|++|+|+.. ..+|+|+|+++++||.++|+|+||||||||+++|+|++.| .+|+|.++|.++.
T Consensus 3 ~i~~~~l~~~y~~~-----------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~~ 69 (235)
T COG1122 3 MIEAENLSFRYPGR-----------KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDTS 69 (235)
T ss_pred eEEEEEEEEEcCCC-----------ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeecc
Confidence 48999999999642 3599999999999999999999999999999999999964 5799999999876
Q ss_pred ----CccccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 003437 127 ----TSYMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS 200 (820)
Q Consensus 127 ----~~~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS 200 (820)
....++.+|||+|++ +++. -||.|.+.|+.... ++++++.+++++++++.+||.+.+++.+ ..||
T Consensus 70 ~~~~~~~~~~~vG~VfQnpd~q~~~-~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----~~LS 140 (235)
T COG1122 70 SEKSLLELRQKVGLVFQNPDDQLFG-PTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPP-----FNLS 140 (235)
T ss_pred chhhHHHhhcceEEEEECccccccc-CcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCc-----cccC
Confidence 335678899999997 4554 49999999998754 4677889999999999999999887775 4799
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
|||||||+||.+|+.+|++|+|||||+|||+..+.++++.+++|.++ |+|+|++|||.+. +..+||++++|++|++++
T Consensus 141 GGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~-~~~~ad~v~vl~~G~i~~ 219 (235)
T COG1122 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLEL-VLEYADRVVVLDDGKILA 219 (235)
T ss_pred CcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHH-HHhhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999999987 7999999999985 888999999999999999
Q ss_pred EcCccchhhh
Q 003437 280 MGSPVALPAH 289 (820)
Q Consensus 280 ~G~~~~~~~~ 289 (820)
+|+|.++.+.
T Consensus 220 ~g~p~~i~~~ 229 (235)
T COG1122 220 DGDPAEIFND 229 (235)
T ss_pred cCCHHHHhhh
Confidence 9998777543
No 34
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.8e-44 Score=396.15 Aligned_cols=225 Identities=28% Similarity=0.421 Sum_probs=198.9
Q ss_pred CCCCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEEC
Q 003437 42 MIPGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRID 121 (820)
Q Consensus 42 ~~~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~ 121 (820)
.+....|+++||+++|++ +.+|+||||+|++||+++|+||||||||||+|+|+|++. +++|+|.++
T Consensus 36 ~~~~~~i~i~nl~k~y~~------------~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~ 101 (340)
T PRK13536 36 SMSTVAIDLAGVSKSYGD------------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVL 101 (340)
T ss_pred cCCceeEEEEEEEEEECC------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEEC
Confidence 344456999999999953 249999999999999999999999999999999999985 468999999
Q ss_pred CEeCCCc--cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 003437 122 GKPVTTS--YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 122 G~~~~~~--~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~L 199 (820)
|+++... ..++.+||++|++.+++.+||.||+.+....+ ..+..+..++++++++.+||.+..++.++ +|
T Consensus 102 G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~L 173 (340)
T PRK13536 102 GVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARVS-----DL 173 (340)
T ss_pred CEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCChh-----hC
Confidence 9987532 34567999999999999999999999876543 23444556678899999999988888876 69
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
||||||||+||+||+++|++|||||||+|||+.++..+.++|++++++|+|||++||+++ ++.++||+|++|++|++++
T Consensus 174 S~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~G~i~~ 252 (340)
T PRK13536 174 SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEAGRKIA 252 (340)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999888999999999998 4889999999999999999
Q ss_pred EcCccchhhh
Q 003437 280 MGSPVALPAH 289 (820)
Q Consensus 280 ~G~~~~~~~~ 289 (820)
.|+++++...
T Consensus 253 ~g~~~~l~~~ 262 (340)
T PRK13536 253 EGRPHALIDE 262 (340)
T ss_pred EcCHHHHHhh
Confidence 9999887653
No 35
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=3.6e-44 Score=397.85 Aligned_cols=219 Identities=28% Similarity=0.446 Sum_probs=196.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCc--eEEEECCEe
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE--GSVRIDGKP 124 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~--G~I~i~G~~ 124 (820)
.|+++||+++|++ +.+|+|+|++|++||+++|+|||||||||||++|+|+.+ +++ |+|.++|++
T Consensus 5 ~l~~~~l~~~~~~------------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~~ 70 (362)
T TIGR03258 5 GIRIDHLRVAYGA------------NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADRD 70 (362)
T ss_pred EEEEEEEEEEECC------------eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCEE
Confidence 4899999999953 248999999999999999999999999999999999885 457 999999998
Q ss_pred CCCc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 125 VTTS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 125 ~~~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
+... ..++.+|||+|+..+||++||+||+.|+...+ ..++.+..++++++++.+||++..++++. +|||||
T Consensus 71 ~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~-----~LSgGq 142 (362)
T TIGR03258 71 LTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLPA-----QLSGGM 142 (362)
T ss_pred CCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCChh-----hCCHHH
Confidence 8542 23567999999999999999999999987643 24566777889999999999988887765 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART--GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~--g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.++ |.|+|++|||++. +..+||+|++|++|+++..|
T Consensus 143 ~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~e-a~~l~dri~vl~~G~i~~~g 221 (362)
T TIGR03258 143 QQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDD-ALTLADKAGIMKDGRLAAHG 221 (362)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999999999999999876 8999999999974 78899999999999999999
Q ss_pred Cccchhh
Q 003437 282 SPVALPA 288 (820)
Q Consensus 282 ~~~~~~~ 288 (820)
+++++..
T Consensus 222 ~~~~~~~ 228 (362)
T TIGR03258 222 EPQALYD 228 (362)
T ss_pred CHHHHHh
Confidence 9988753
No 36
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=6.3e-44 Score=397.38 Aligned_cols=219 Identities=28% Similarity=0.450 Sum_probs=196.1
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+|+++++||+++|+|||||||||||++|+|+.+ +++|+|.++|+++.
T Consensus 14 ~L~l~~l~~~~~~------------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~ 79 (375)
T PRK09452 14 LVELRGISKSFDG------------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDIT 79 (375)
T ss_pred eEEEEEEEEEECC------------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5999999999953 248999999999999999999999999999999999885 46899999999986
Q ss_pred Cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 127 TS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 127 ~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
.. ..++.+|||+|++.+||++||.||+.|+...+ +.++.+..++++++++.+||++..++++. +|||||||
T Consensus 80 ~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p~-----~LSgGq~Q 151 (375)
T PRK09452 80 HVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKPH-----QLSGGQQQ 151 (375)
T ss_pred CCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHH
Confidence 42 23567999999999999999999999987543 24556667789999999999988887764 79999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
||+|||||+.+|++|||||||++||..++..+.+.|+++.++ |.|+|++|||+. ++..++|+|++|++|+++..|+++
T Consensus 152 RVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~ 230 (375)
T PRK09452 152 RVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRDGRIEQDGTPR 230 (375)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999875 999999999997 488899999999999999999998
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 231 ~i~~ 234 (375)
T PRK09452 231 EIYE 234 (375)
T ss_pred HHHh
Confidence 8743
No 37
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=6.3e-44 Score=395.25 Aligned_cols=222 Identities=26% Similarity=0.436 Sum_probs=195.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+|++|++||+++|+||||||||||||+|+|+++ +++|+|+++|+++.
T Consensus 2 ~L~i~~l~~~~~~------------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~ 67 (353)
T PRK10851 2 SIEIANIKKSFGR------------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEEeCC------------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 4899999999953 249999999999999999999999999999999999885 46899999999985
Q ss_pred Cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 127 TS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 127 ~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
.. ..++.++||+|++.++|++||+||+.|+...+.. ...++++..++++++++.+||++..++++. +||||||
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgGq~ 142 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPA-----QLSGGQK 142 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHH
Confidence 42 2346799999999999999999999998654211 123456667889999999999988777764 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||++.. +..+||+|++|++|++++.|++
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~e-a~~~~Dri~vl~~G~i~~~g~~ 221 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEE-AMEVADRVVVMSQGNIEQAGTP 221 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999875 8999999999974 8889999999999999999999
Q ss_pred cchhh
Q 003437 284 VALPA 288 (820)
Q Consensus 284 ~~~~~ 288 (820)
+++..
T Consensus 222 ~~i~~ 226 (353)
T PRK10851 222 DQVWR 226 (353)
T ss_pred HHHHh
Confidence 88753
No 38
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-43 Score=369.04 Aligned_cols=215 Identities=31% Similarity=0.505 Sum_probs=188.6
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|++++|++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+++ +++|+|.++|.++..
T Consensus 1 i~~~~~~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 66 (220)
T cd03265 1 IEVENLVKKYGD------------FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVR 66 (220)
T ss_pred CEEEEEEEEECC------------EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCc
Confidence 578999999853 249999999999999999999999999999999999875 468999999988753
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 128 --SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 128 --~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
...++.++|++|++.+++.+||+||+.+....+ ..+.++..++++++++.+||++..++.++ .|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 138 (220)
T cd03265 67 EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLVK-----TYSGGMRR 138 (220)
T ss_pred ChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHH
Confidence 123457899999999999999999999876543 23344556778999999999887777765 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
||+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|+++. +..+||++++|++|+++..|+++
T Consensus 139 r~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~-~~~~~d~i~~l~~G~i~~~~~~~ 217 (220)
T cd03265 139 RLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEE-AEQLCDRVAIIDHGRIIAEGTPE 217 (220)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEeCCEEEEeCChH
Confidence 999999999999999999999999999999999999999876 8999999999984 78899999999999999998876
Q ss_pred c
Q 003437 285 A 285 (820)
Q Consensus 285 ~ 285 (820)
+
T Consensus 218 ~ 218 (220)
T cd03265 218 E 218 (220)
T ss_pred H
Confidence 5
No 39
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.7e-45 Score=359.29 Aligned_cols=221 Identities=28% Similarity=0.458 Sum_probs=198.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|..+||.|+|++ +++++|||+++++||+++|+|||||||||.+.++.|+.. +++|+|.+||.+++
T Consensus 4 ~L~a~~l~K~y~k------------r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT 69 (243)
T COG1137 4 TLVAENLAKSYKK------------RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDIT 69 (243)
T ss_pred EEEehhhhHhhCC------------eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccc
Confidence 4899999999964 359999999999999999999999999999999999986 46899999999998
Q ss_pred Ccc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 TSY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
... .+..+||+||++..|..|||+|||....+.+.. ...+.+.+++++++|+.|+|.+.++.+-. .||||
T Consensus 70 ~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a~-----sLSGG 143 (243)
T COG1137 70 KLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKAY-----SLSGG 143 (243)
T ss_pred cCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCccc-----ccccc
Confidence 643 234479999999999999999999999887632 22334666778999999999999988754 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
||+|+.|||||+.+|+.++||||++|.||.+..+|.++++.|++.|..|++|-|+... ...+|||.+++++|+++++|+
T Consensus 144 ERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVRE-tL~i~dRaYIi~~G~vla~G~ 222 (243)
T COG1137 144 ERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRE-TLDICDRAYIISDGKVLAEGS 222 (243)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHH-HHhhhheEEEEecCeEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999984 788999999999999999999
Q ss_pred ccchhh
Q 003437 283 PVALPA 288 (820)
Q Consensus 283 ~~~~~~ 288 (820)
|+++.+
T Consensus 223 p~ei~~ 228 (243)
T COG1137 223 PEEIVN 228 (243)
T ss_pred HHHHhc
Confidence 998864
No 40
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2.6e-44 Score=347.22 Aligned_cols=215 Identities=31% Similarity=0.467 Sum_probs=189.1
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|.+++|.++|.. .=-.++++|.+||++||+||||||||||||+|+|+..| .+|+|++||++.+.
T Consensus 2 l~L~~V~~~y~~--------------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P--~~G~i~i~g~d~t~ 65 (231)
T COG3840 2 LALDDVRFSYGH--------------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP--ASGEILINGVDHTA 65 (231)
T ss_pred ccccceEEeeCc--------------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC--CCceEEEcCeecCc
Confidence 667889999864 22457899999999999999999999999999999864 67999999999865
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 128 S-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 128 ~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
. ...+-++++||+.+||.++||.+|+.++..-.+ .. .++.+++++.++..+||..+.+++.+ +||||||||
T Consensus 66 ~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQR 137 (231)
T COG3840 66 SPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQR 137 (231)
T ss_pred CCcccCChhhhhhccccchhhhhhhhhcccCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHHH
Confidence 3 345668999999999999999999998764211 12 34567889999999999999888876 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA 285 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 285 (820)
|++||+|+++-+||+||||+|+|||.-+.++..++.+++. ++.|++++||+|++ +.+++|+++++++|+|.+.|+.++
T Consensus 138 vALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~D-a~~ia~~~~fl~~Gri~~~g~~~~ 216 (231)
T COG3840 138 VALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPED-AARIADRVVFLDNGRIAAQGSTQE 216 (231)
T ss_pred HHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH-HHHhhhceEEEeCCEEEeeccHHH
Confidence 9999999999999999999999999999999999999986 59999999999985 889999999999999999999877
Q ss_pred hh
Q 003437 286 LP 287 (820)
Q Consensus 286 ~~ 287 (820)
..
T Consensus 217 ~~ 218 (231)
T COG3840 217 LL 218 (231)
T ss_pred Hh
Confidence 64
No 41
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.6e-43 Score=385.72 Aligned_cols=219 Identities=32% Similarity=0.477 Sum_probs=193.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++ +++|+|.++|.++.
T Consensus 4 ~i~~~~l~~~~~~------------~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (303)
T TIGR01288 4 AIDLVGVSKSYGD------------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPVP 69 (303)
T ss_pred EEEEEeEEEEeCC------------eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECc
Confidence 5999999999953 249999999999999999999999999999999999885 46899999999875
Q ss_pred Cc--cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 127 TS--YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 127 ~~--~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
.. ..++.+||++|++.+++.+||+||+.+....+ ..+..+..++++++++.++|.+..++.++ .||||||
T Consensus 70 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~~ 141 (303)
T TIGR01288 70 SRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVA-----LLSGGMK 141 (303)
T ss_pred ccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCchh-----hCCHHHH
Confidence 32 23567899999999999999999998765432 23444555678899999999988888775 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
|||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.++||++++|++|++++.|+++
T Consensus 142 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 220 (303)
T TIGR01288 142 RRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPH 220 (303)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999999999999999999999999999999999888999999999998 478899999999999999999998
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 221 ~~~~ 224 (303)
T TIGR01288 221 ALID 224 (303)
T ss_pred HHHh
Confidence 8754
No 42
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-43 Score=366.30 Aligned_cols=211 Identities=37% Similarity=0.561 Sum_probs=184.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++ +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (213)
T cd03259 1 LELKGLSKTYGS------------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTG 66 (213)
T ss_pred CeeeeeEEEeCC------------eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCc
Confidence 478999999853 249999999999999999999999999999999999885 468999999998753
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 128 S-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 128 ~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
. ..++.++|++|++.+++.+||+||+.+..... .....+..+++.++++.+||.+..++.+. .||||||||
T Consensus 67 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qr 138 (213)
T cd03259 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYPH-----ELSGGQQQR 138 (213)
T ss_pred CchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHH
Confidence 2 23457899999999999999999998875432 13344556678999999999887777664 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|+++. +.++||++++|++|++++.|
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEE-ALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH-HHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999987 49999999999974 78899999999999998765
No 43
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.4e-43 Score=367.61 Aligned_cols=209 Identities=30% Similarity=0.539 Sum_probs=182.2
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++. .+.+|+++|+++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~~----------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 69 (216)
T TIGR00960 2 IRFEQVSKAYPGG----------HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLTR 69 (216)
T ss_pred eEEEEEEEEecCC----------CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehhh
Confidence 7899999999531 1249999999999999999999999999999999999885 468999999998743
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 128 S------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 128 ~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
. ..++.++|++|++.+++.+||.||+.+....+ ....++..+++.++++.+||++..++.++ .|||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 141 (216)
T TIGR00960 70 LRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALPM-----QLSG 141 (216)
T ss_pred cChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCH
Confidence 1 13467899999999999999999999876543 23344556788999999999887777664 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +..+||++++|++|++
T Consensus 142 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~-~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 142 GEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINL-VETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999999999998779999999999974 7788999999999974
No 44
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-43 Score=393.90 Aligned_cols=219 Identities=30% Similarity=0.466 Sum_probs=195.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|.+ +.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++.
T Consensus 19 ~l~l~~v~~~~~~------------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~ 84 (377)
T PRK11607 19 LLEIRNLTKSFDG------------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDLS 84 (377)
T ss_pred eEEEEeEEEEECC------------EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5999999999853 248999999999999999999999999999999999985 46899999999885
Q ss_pred Cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 127 TS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 127 ~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
.. ..++.+|||+|++.+||++||.||+.|+...+ ..++.+.++++.++++.+||.+..++.+. +|||||||
T Consensus 85 ~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~~-----~LSgGq~Q 156 (377)
T PRK11607 85 HVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKPH-----QLSGGQRQ 156 (377)
T ss_pred CCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHH
Confidence 42 34577999999999999999999999987643 24566777889999999999987777664 79999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
||+|||||+.+|++|||||||++||...+..+.+.|+++.+ .|.|+|++|||++ ++..++|++++|++|+++..|+++
T Consensus 157 RVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~ 235 (377)
T PRK11607 157 RVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPE 235 (377)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHH
Confidence 99999999999999999999999999999999999999876 4999999999997 488899999999999999999998
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 236 ~~~~ 239 (377)
T PRK11607 236 EIYE 239 (377)
T ss_pred HHHh
Confidence 8754
No 45
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-43 Score=393.97 Aligned_cols=219 Identities=28% Similarity=0.459 Sum_probs=194.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||||+|+|+++ +++|+|.++|+++.
T Consensus 3 ~l~i~~l~~~~~~------------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i~ 68 (369)
T PRK11000 3 SVTLRNVTKAYGD------------VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMN 68 (369)
T ss_pred EEEEEEEEEEeCC------------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 4899999999953 248999999999999999999999999999999999985 46899999999885
Q ss_pred Cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 127 TS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 127 ~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
.. ..++.++||+|+..+++.+||+||+.|+...+ ..+.++..++++++++.+||++..++.+. +|||||||
T Consensus 69 ~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~~-----~LSgGq~Q 140 (369)
T PRK11000 69 DVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQ 140 (369)
T ss_pred CCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHH
Confidence 32 23467999999999999999999999987543 23455666789999999999988777765 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++|||++ ++..+||++++|++|+++..|+++
T Consensus 141 RvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~ 219 (369)
T PRK11000 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPL 219 (369)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999865 999999999997 478899999999999999999998
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 220 ~i~~ 223 (369)
T PRK11000 220 ELYH 223 (369)
T ss_pred HHHh
Confidence 7743
No 46
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-43 Score=370.44 Aligned_cols=220 Identities=27% Similarity=0.448 Sum_probs=189.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+++ +++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (239)
T cd03296 2 SIEVRNVSKRFGD------------FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDAT 67 (239)
T ss_pred EEEEEeEEEEECC------------EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 4899999999953 249999999999999999999999999999999999875 46899999999875
Q ss_pred Cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 127 TS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 127 ~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
.. ..++.++|++|++.+++.+||+||+.+....+.. ......+..++++++++.+||.+..++.++ .||||||
T Consensus 68 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 142 (239)
T cd03296 68 DVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPA-----QLSGGQR 142 (239)
T ss_pred cCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChh-----hCCHHHH
Confidence 32 2245689999999999999999999987543211 001233445678899999999887777664 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
|||+||+||+.+|++|||||||+|||+.++..+.++|++++++ |+|||+++|+++. +..+||++++|++|++++.|++
T Consensus 143 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~-~~~~~d~i~~l~~G~i~~~~~~ 221 (239)
T cd03296 143 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEE-ALEVADRVVVMNKGRIEQVGTP 221 (239)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEECCeEEEecCH
Confidence 9999999999999999999999999999999999999999875 8999999999974 7788999999999999999988
Q ss_pred cch
Q 003437 284 VAL 286 (820)
Q Consensus 284 ~~~ 286 (820)
+++
T Consensus 222 ~~~ 224 (239)
T cd03296 222 DEV 224 (239)
T ss_pred HHH
Confidence 765
No 47
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.6e-43 Score=370.36 Aligned_cols=220 Identities=32% Similarity=0.522 Sum_probs=189.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||++.|++ +.+|+++|+++++||+++|+||||||||||+++|+|+++ +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (236)
T cd03219 1 LEVRGLTKRFGG------------LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITG 66 (236)
T ss_pred CeeeeeEEEECC------------EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCC
Confidence 468999999853 249999999999999999999999999999999999885 468999999998754
Q ss_pred cc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC-------CCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 003437 128 SY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPS-------ISRDEKKKRVYELLDQLGLRSATHTYIGNEGR 196 (820)
Q Consensus 128 ~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~ 196 (820)
.. .++.++|++|++.+++.+||+||+.+......... ....+..+++.++++.+||++..++.+.
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 142 (236)
T cd03219 67 LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAG---- 142 (236)
T ss_pred CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChh----
Confidence 21 23568999999999999999999998764321110 0234455678999999999887777664
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +..+||++++|++|+
T Consensus 143 -~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~-~~~~~d~i~~l~~G~ 220 (236)
T cd03219 143 -ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDV-VMSLADRVTVLDQGR 220 (236)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEEEeCCE
Confidence 699999999999999999999999999999999999999999999998789999999999984 778999999999999
Q ss_pred EEEEcCccchh
Q 003437 277 LVYMGSPVALP 287 (820)
Q Consensus 277 iv~~G~~~~~~ 287 (820)
+++.|+++++.
T Consensus 221 i~~~~~~~~~~ 231 (236)
T cd03219 221 VIAEGTPDEVR 231 (236)
T ss_pred EEeecCHHHhc
Confidence 99999887653
No 48
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-43 Score=389.43 Aligned_cols=221 Identities=31% Similarity=0.482 Sum_probs=193.5
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|+.+. ..+.+|+|+||+|++||+++|+||||||||||+|+|+|+++ +++|+|.++|.++..
T Consensus 2 i~i~~l~~~y~~~~--------~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~~ 71 (343)
T PRK11153 2 IELKNISKVFPQGG--------RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLTA 71 (343)
T ss_pred EEEEeEEEEeCCCC--------CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCc
Confidence 88999999996211 12359999999999999999999999999999999999985 468999999998853
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 128 S------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 128 ~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
. ..++.+|||+|++.+++.+||+||+.+....+ +.+..+..+++.++++.+||++..++.+. +|||
T Consensus 72 ~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSg 143 (343)
T PRK11153 72 LSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYPA-----QLSG 143 (343)
T ss_pred CCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCH
Confidence 2 12567999999999999999999999886543 23455566789999999999887777664 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
||||||+|||+|+.+|++|||||||+|||+.++..+.++|++++++ |+|||++||+++. +.++||++++|++|++++.
T Consensus 144 Gq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~-i~~~~d~v~~l~~G~i~~~ 222 (343)
T PRK11153 144 GQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDV-VKRICDRVAVIDAGRLVEQ 222 (343)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999865 9999999999974 7889999999999999999
Q ss_pred cCccchh
Q 003437 281 GSPVALP 287 (820)
Q Consensus 281 G~~~~~~ 287 (820)
|+++++.
T Consensus 223 g~~~~~~ 229 (343)
T PRK11153 223 GTVSEVF 229 (343)
T ss_pred cCHHHHH
Confidence 9987764
No 49
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3e-43 Score=369.04 Aligned_cols=216 Identities=29% Similarity=0.493 Sum_probs=188.5
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+|+||++++||+++|+||||||||||||+|+|+++ +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 66 (232)
T cd03218 1 LRAENLSKRYGK------------RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITK 66 (232)
T ss_pred CeEEEEEEEeCC------------EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 578999999853 249999999999999999999999999999999999885 468999999998753
Q ss_pred cc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 128 SY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 128 ~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
.. .++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+|+.+..++.+. .|||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 138 (232)
T cd03218 67 LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKAS-----SLSGGE 138 (232)
T ss_pred CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHH
Confidence 21 2356899999999999999999999875433 12344556678899999999887777664 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+++. +.++||++++|++|++++.|++
T Consensus 139 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~-~~~~~d~i~~l~~G~i~~~~~~ 217 (232)
T cd03218 139 RRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRE-TLSITDRAYIIYEGKVLAEGTP 217 (232)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEECCeEEEEeCH
Confidence 999999999999999999999999999999999999999998889999999999974 7889999999999999999987
Q ss_pred cch
Q 003437 284 VAL 286 (820)
Q Consensus 284 ~~~ 286 (820)
+++
T Consensus 218 ~~~ 220 (232)
T cd03218 218 EEI 220 (232)
T ss_pred HHh
Confidence 665
No 50
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-43 Score=363.77 Aligned_cols=216 Identities=37% Similarity=0.541 Sum_probs=186.5
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++.. ..+.+|+|+|++|++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~~--------~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 70 (220)
T cd03293 1 LEVRNVSKTYGGGG--------GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG 70 (220)
T ss_pred CeEEEEEEEcCCCC--------cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc
Confidence 57899999986411 11359999999999999999999999999999999999875 468999999998753
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 003437 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRV 207 (820)
Q Consensus 128 ~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv 207 (820)
.++.++||+|++.+++.+||+||+.+....+ ..+.++..++++++++.+||.+..++.++ .||||||||+
T Consensus 71 --~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl 140 (220)
T cd03293 71 --PGPDRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYPH-----QLSGGMRQRV 140 (220)
T ss_pred --ccCcEEEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCcc-----cCCHHHHHHH
Confidence 3567899999999999899999999876543 23344556788999999999887777664 6999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEe--CCeEEEEcCcc
Q 003437 208 SIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLA--RGRLVYMGSPV 284 (820)
Q Consensus 208 ~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~--~G~iv~~G~~~ 284 (820)
+||++|+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||+++|+++. +..+||++++|+ +|++++.++.+
T Consensus 141 ~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 141 ALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDE-AVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH-HHHhCCEEEEEECCCCEEEEEEEec
Confidence 999999999999999999999999999999999999965 58999999999974 778999999999 79999887653
No 51
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-43 Score=378.60 Aligned_cols=233 Identities=27% Similarity=0.427 Sum_probs=195.6
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|+.+.. ..+.+|+|||++|++||+++|+||||||||||+|+|+|+++ +.+|+|+++|.++..
T Consensus 2 i~~~~v~~~y~~~~~-------~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~ 72 (288)
T PRK13643 2 IKFEKVNYTYQPNSP-------FASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVSS 72 (288)
T ss_pred EEEEEEEEEeCCCCc-------ccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECcc
Confidence 899999999963210 11359999999999999999999999999999999999885 468999999998742
Q ss_pred -------ccccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 003437 128 -------SYMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRR 197 (820)
Q Consensus 128 -------~~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~ 197 (820)
...++.+|||+|++ .+++ .||.||+.|+.... +.++++.++++.++++.+||. +..++.+ +
T Consensus 73 ~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~ 143 (288)
T PRK13643 73 TSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSP-----F 143 (288)
T ss_pred ccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCc-----c
Confidence 12456789999986 5665 59999999876532 245666778899999999996 4556554 4
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +.++||+|++|++|++
T Consensus 144 ~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~-~~~~~dri~~l~~G~i 222 (288)
T PRK13643 144 ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDD-VADYADYVYLLEKGHI 222 (288)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEEEECCEE
Confidence 799999999999999999999999999999999999999999999998789999999999974 7789999999999999
Q ss_pred EEEcCccchhh---hhhccCCCCCC
Q 003437 278 VYMGSPVALPA---HLAGFGRTVPD 299 (820)
Q Consensus 278 v~~G~~~~~~~---~f~~~g~~~~~ 299 (820)
++.|+++++.. .+...|+.+|.
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~p~ 247 (288)
T PRK13643 223 ISCGTPSDVFQEVDFLKAHELGVPK 247 (288)
T ss_pred EEECCHHHHHcCHHHHHHcCCCCCh
Confidence 99999988753 23455665554
No 52
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=5.1e-43 Score=381.36 Aligned_cols=219 Identities=29% Similarity=0.499 Sum_probs=194.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.++++|++++|++ +.+|+|+||++++||+++|+||||||||||||+|+|+++ +++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~------------~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 2 SIRVSSLTKLYGT------------QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEEECC------------EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 4899999999953 249999999999999999999999999999999999875 46899999999875
Q ss_pred Cc--cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 127 TS--YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 127 ~~--~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
.. ..++.+||++|++.+++.+||.||+.+.+.++ +.+.++..++++++++.+||.+..++.++ .||||||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKIG-----QLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCchh-----hCCHHHH
Confidence 42 24567999999999999999999999887654 23445556788999999999988888775 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
|||+||+||+++|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++|++++.|+++
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~ 217 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLD 217 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999965 799999999998 488999999999999999999998
Q ss_pred chhhh
Q 003437 285 ALPAH 289 (820)
Q Consensus 285 ~~~~~ 289 (820)
++...
T Consensus 218 ~~~~~ 222 (301)
T TIGR03522 218 ELSAA 222 (301)
T ss_pred HHHHh
Confidence 87553
No 53
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=6.7e-43 Score=361.61 Aligned_cols=211 Identities=28% Similarity=0.500 Sum_probs=184.6
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+|+|++|++||+++|+||||||||||+++|+|+++ +.+|+|.++|.++..
T Consensus 1 i~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~ 66 (213)
T cd03301 1 VELENVTKRFGN------------VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTD 66 (213)
T ss_pred CEEEeeEEEECC------------eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCc
Confidence 478999999853 249999999999999999999999999999999999875 468999999998753
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 128 S-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 128 ~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
. ..++.++|++|++.+++.+||+||+.+....+ ....++..++++++++.+||.+..++.++ .||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 138 (213)
T cd03301 67 LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKPK-----QLSGGQRQR 138 (213)
T ss_pred CCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCChh-----hCCHHHHHH
Confidence 2 22456899999999998899999998875433 23445556788999999999887777765 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++.. +.++||++++|++|++++.|
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~-~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVE-AMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999874 8999999999974 78899999999999999875
No 54
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.8e-43 Score=367.79 Aligned_cols=220 Identities=31% Similarity=0.506 Sum_probs=190.2
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||++.|+++. ..+.+|+++|++|++||+++|+||||||||||+++|+|+++ +++|+|.++|+++..
T Consensus 2 i~~~~l~~~~~~~~--------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 71 (233)
T cd03258 2 IELKNVSKVFGDTG--------GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTL 71 (233)
T ss_pred eEEecceEEccCCC--------CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccc
Confidence 78999999985320 01259999999999999999999999999999999999985 468999999998753
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 128 S------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 128 ~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
. ..++.++|++|++.+++.+|++||+.+....+ .....+..+.+.++++.+||.+..++.+. .|||
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 143 (233)
T cd03258 72 LSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYPA-----QLSG 143 (233)
T ss_pred CCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcChh-----hCCH
Confidence 2 12467899999999999999999998876543 23344556678999999999887777654 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.++||++++|++|++++.
T Consensus 144 G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~-~~~~~d~i~~l~~G~i~~~ 222 (233)
T cd03258 144 GQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEV-VKRICDRVAVMEKGEVVEE 222 (233)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999875 8999999999974 7889999999999999999
Q ss_pred cCccch
Q 003437 281 GSPVAL 286 (820)
Q Consensus 281 G~~~~~ 286 (820)
|+++++
T Consensus 223 ~~~~~~ 228 (233)
T cd03258 223 GTVEEV 228 (233)
T ss_pred cCHHHH
Confidence 987665
No 55
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-43 Score=361.95 Aligned_cols=210 Identities=31% Similarity=0.592 Sum_probs=184.6
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|+++.|.+ +.+|+|+|+++++||+++|+||||||||||+++|+|+++ +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (210)
T cd03269 1 LEVENVTKRFGR------------VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI 66 (210)
T ss_pred CEEEEEEEEECC------------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH
Confidence 578999999853 249999999999999999999999999999999999875 468999999998754
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 003437 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRV 207 (820)
Q Consensus 128 ~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv 207 (820)
..++.++|++|++.+++.+||+||+.+....+ ..+..+..+++.++++.+||++..++.+. .|||||||||
T Consensus 67 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl 137 (210)
T cd03269 67 -AARNRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRVE-----ELSKGNQQKV 137 (210)
T ss_pred -HHHccEEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcHh-----hCCHHHHHHH
Confidence 34567899999999999999999999876543 23344556788999999999887777664 6999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 208 SIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 208 ~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++.. +.++||++++|++|++++.|
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~-~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMEL-VEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH-HHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999998778999999999974 77889999999999998754
No 56
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=5.9e-43 Score=363.31 Aligned_cols=215 Identities=31% Similarity=0.514 Sum_probs=187.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||++.|+++. +...+|+|+|+++++||+++|+|+||||||||+++|+|+++ +++|+|.++|+++..
T Consensus 2 l~~~~v~~~~~~~~--------~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 71 (218)
T cd03266 2 ITADALTKRFRDVK--------KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVVK 71 (218)
T ss_pred eEEEEEEEecCCCC--------ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEccc
Confidence 78999999996421 11259999999999999999999999999999999999885 468999999998753
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 128 --SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 128 --~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
...++.++|++|++.+++.+||+||+.+....+ ..+..+..+++.++++.+||.+..++.++ .|||||||
T Consensus 72 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 143 (218)
T cd03266 72 EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVG-----GFSTGMRQ 143 (218)
T ss_pred CHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhhh-----hcCHHHHH
Confidence 124567899999999999999999998865543 23445566788999999999887777765 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|++||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++.. +..+||++++|++|++++.|
T Consensus 144 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~-~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 144 KVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQE-VERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999999998779999999999974 78899999999999998754
No 57
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.8e-44 Score=360.95 Aligned_cols=222 Identities=31% Similarity=0.499 Sum_probs=197.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ ..+++||||++++||+++||||||||||||+|+|+|.++ |++|+|.++|++++
T Consensus 4 lL~v~~l~k~FGG------------l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it 69 (250)
T COG0411 4 LLEVRGLSKRFGG------------LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDIT 69 (250)
T ss_pred eeeeccceeecCC------------EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccC
Confidence 5889999999964 359999999999999999999999999999999999986 46899999999997
Q ss_pred Ccc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcC--------CC-CCCHHHHHHHHHHHHHHcCCCccccccccC
Q 003437 127 TSY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRL--------PP-SISRDEKKKRVYELLDQLGLRSATHTYIGN 193 (820)
Q Consensus 127 ~~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~--------~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~ 193 (820)
... .+..++--||...+|++|||.||+..++..+. +. ....++..+++.++|+.+||.+.+|+..|
T Consensus 70 ~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~- 148 (250)
T COG0411 70 GLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG- 148 (250)
T ss_pred CCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-
Confidence 532 23446788999999999999999999865331 11 11345667889999999999999999987
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 194 EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 194 ~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
+||+|||||+.|||||+++|++|+||||.+||.+....++.++|+++.+ .|.||+++.||++. +..+||||++|
T Consensus 149 ----~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~-Vm~l~dri~Vl 223 (250)
T COG0411 149 ----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVL 223 (250)
T ss_pred ----cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH-HhhhccEEEec
Confidence 5999999999999999999999999999999999999999999999998 47999999999985 89999999999
Q ss_pred eCCeEEEEcCccchhh
Q 003437 273 ARGRLVYMGSPVALPA 288 (820)
Q Consensus 273 ~~G~iv~~G~~~~~~~ 288 (820)
+.|+++++|+|+++.+
T Consensus 224 ~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 224 NYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCcCcccCCHHHHhc
Confidence 9999999999998864
No 58
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-42 Score=375.70 Aligned_cols=224 Identities=26% Similarity=0.432 Sum_probs=190.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|+.... ..+.+|+||||+|++||+++|+||||||||||+++|+|+++ +.+|+|.++|.++.
T Consensus 2 ~l~~~~l~~~y~~~~~-------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13637 2 SIKIENLTHIYMEGTP-------FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEEECCCCCc-------cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECC
Confidence 3899999999964210 12359999999999999999999999999999999999985 46899999999985
Q ss_pred Cc-----cccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCCCCCC
Q 003437 127 TS-----YMKMVSSYVMQDDQ-LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR--SATHTYIGNEGRRG 198 (820)
Q Consensus 127 ~~-----~~~~~~gyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~ig~~~~~~ 198 (820)
.. ..++.+|||+|++. .+...||+||+.|..... +.++++..+++.++++.+||. +..++.+ +.
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSP-----FE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCc-----cc
Confidence 31 24567899999863 233469999999875432 345666778899999999997 5566655 47
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
||||||||++||+||+.+|++|||||||+|||+.++..+.++|++++++ |+|||++||+++. +..+||++++|++|++
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~-~~~~~drv~~l~~G~i 223 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMED-VAKLADRIIVMNKGKC 223 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 9999999999874 7788999999999999
Q ss_pred EEEcCccchhh
Q 003437 278 VYMGSPVALPA 288 (820)
Q Consensus 278 v~~G~~~~~~~ 288 (820)
++.|+++++.+
T Consensus 224 ~~~g~~~~~~~ 234 (287)
T PRK13637 224 ELQGTPREVFK 234 (287)
T ss_pred EEECCHHHHHh
Confidence 99999988753
No 59
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=6.3e-43 Score=365.47 Aligned_cols=219 Identities=28% Similarity=0.431 Sum_probs=185.3
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC---CCCceEEEECCEe
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ---GSLEGSVRIDGKP 124 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~---~~~~G~I~i~G~~ 124 (820)
|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+|+|+|++.+ .+.+|+|.++|++
T Consensus 1 i~~~~l~~~~~~------------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~ 68 (227)
T cd03260 1 IELRDLNVYYGD------------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKD 68 (227)
T ss_pred CEEEEEEEEcCC------------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEE
Confidence 578999999853 2499999999999999999999999999999999999711 2468999999998
Q ss_pred CCCc-----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 003437 125 VTTS-----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 125 ~~~~-----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~L 199 (820)
+... ..++.++|++|++.++ .+||+||+.+....+. .....+..+++.++++.+||.+..++.+. +.+|
T Consensus 69 ~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~L 142 (227)
T cd03260 69 IYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGL 142 (227)
T ss_pred hhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccC
Confidence 7531 2356789999999888 7899999998765431 11223345678899999999876665531 2479
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ .|||++||+++. +.++||++++|++|++++
T Consensus 143 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~-~~~~~d~i~~l~~G~i~~ 220 (227)
T cd03260 143 SGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQ-AARVADRTAFLLNGRLVE 220 (227)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHH-HHHhCCEEEEEeCCEEEE
Confidence 999999999999999999999999999999999999999999999877 999999999974 778999999999999999
Q ss_pred EcCccch
Q 003437 280 MGSPVAL 286 (820)
Q Consensus 280 ~G~~~~~ 286 (820)
.|+++++
T Consensus 221 ~g~~~~~ 227 (227)
T cd03260 221 FGPTEQI 227 (227)
T ss_pred ecCcccC
Confidence 9987653
No 60
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=6.7e-43 Score=363.42 Aligned_cols=217 Identities=34% Similarity=0.550 Sum_probs=188.2
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||++.|++. .+++|+|+|+++++||+++|+||||||||||+|+|+|+.+ +++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~----------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 68 (220)
T cd03263 1 LQIRNLTKTYKKG----------TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRT 68 (220)
T ss_pred CEEEeeEEEeCCC----------CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 5789999998531 1359999999999999999999999999999999999875 468999999998753
Q ss_pred c--cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 128 S--YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 128 ~--~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
. ..++.++|++|++.+++.+||+||+.+....+ ..+..+..++++++++.+||.+..++.++ .|||||||
T Consensus 69 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 140 (220)
T cd03263 69 DRKAARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRAR-----TLSGGMKR 140 (220)
T ss_pred chHHHhhhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChhh-----hCCHHHHH
Confidence 2 23556899999999999999999999876543 23344455678999999999887777765 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA 285 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 285 (820)
||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|+++. +.++||++++|++|++++.|++++
T Consensus 141 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~-~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 141 KLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDE-AEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHH-HHHhcCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999999976 5999999999984 778899999999999999998765
Q ss_pred h
Q 003437 286 L 286 (820)
Q Consensus 286 ~ 286 (820)
+
T Consensus 219 ~ 219 (220)
T cd03263 219 L 219 (220)
T ss_pred c
Confidence 3
No 61
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=4.7e-43 Score=381.85 Aligned_cols=207 Identities=29% Similarity=0.494 Sum_probs=185.0
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc--cccceEEEEccCCCCCCCCCH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS--YMKMVSSYVMQDDQLFPMLTV 149 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~--~~~~~~gyv~Q~~~l~~~lTV 149 (820)
+.+|+|+||+|++||+++|+||||||||||+|+|+|+++ +++|+|.++|.++... ..++.+||++|++.+++.+||
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 83 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTG 83 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcH
Confidence 459999999999999999999999999999999999985 4689999999987532 235678999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 003437 150 FETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGL 229 (820)
Q Consensus 150 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgL 229 (820)
+||+.+.+.++ +.+..+..++++++++.+||.+..++.++ .|||||||||+||+||+.+|++|||||||+||
T Consensus 84 ~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 155 (302)
T TIGR01188 84 RENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL 155 (302)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 99999876654 23445556789999999999988888775 69999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchhhh
Q 003437 230 DSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAH 289 (820)
Q Consensus 230 D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 289 (820)
|+.++..+.+.|++++++|+|||++||+++ ++.++||++++|++|++++.|+++++...
T Consensus 156 D~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 156 DPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999888999999999997 48889999999999999999999887553
No 62
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.1e-43 Score=368.65 Aligned_cols=220 Identities=33% Similarity=0.511 Sum_probs=186.2
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|+++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~-----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 67 (241)
T cd03256 1 IEVENLSKTYPNG-----------KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINK 67 (241)
T ss_pred CEEeeEEEecCCc-----------cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccc
Confidence 4789999998531 249999999999999999999999999999999999885 468999999998753
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 003437 128 S------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRL-----PPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGR 196 (820)
Q Consensus 128 ~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~ 196 (820)
. ..++.++|++|++.+++.+||+||+.+...... .......+..+++.++++.+||.+..++.+.
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 143 (241)
T cd03256 68 LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRAD---- 143 (241)
T ss_pred cCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcc----
Confidence 2 234678999999999999999999987542110 0011123345678899999999877766654
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +..+||++++|++|
T Consensus 144 -~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~-~~~~~d~v~~l~~G 221 (241)
T cd03256 144 -QLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDL-AREYADRIVGLKDG 221 (241)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECC
Confidence 69999999999999999999999999999999999999999999999864 8999999999985 77899999999999
Q ss_pred eEEEEcCccch
Q 003437 276 RLVYMGSPVAL 286 (820)
Q Consensus 276 ~iv~~G~~~~~ 286 (820)
++++.|+++++
T Consensus 222 ~i~~~~~~~~~ 232 (241)
T cd03256 222 RIVFDGPPAEL 232 (241)
T ss_pred EEEeecCHHHh
Confidence 99999988765
No 63
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-42 Score=362.56 Aligned_cols=218 Identities=29% Similarity=0.444 Sum_probs=186.0
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.|+.+. ..+.+|+++||+|++||+++|+||||||||||+|+|+|+++ +++|+|+++|+++
T Consensus 4 ~~l~~~~l~~~~~~~~--------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 4 ILLQCDNLCKRYQEGS--------VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred ceEEEEeEEEEcCCCC--------cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 3599999999996321 11359999999999999999999999999999999999875 4689999999987
Q ss_pred CCcc------c-cceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 126 TTSY------M-KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 126 ~~~~------~-~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
.... . ++.++|++|++.+++.+||+||+.+..... ....++.++++.++++.+||++..++.+. .
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRPS-----E 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----h
Confidence 5421 1 256899999999999999999999875432 23344556788999999999887776654 6
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||+++. +.. +|++++|++|++
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~~~-~~~~~~l~~G~i 223 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-AKR-MSRQLEMRDGRL 223 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHh-hCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999976 58999999999975 554 589999999999
Q ss_pred EEEcCc
Q 003437 278 VYMGSP 283 (820)
Q Consensus 278 v~~G~~ 283 (820)
++.++.
T Consensus 224 ~~~~~~ 229 (233)
T PRK11629 224 TAELSL 229 (233)
T ss_pred EEEecc
Confidence 988764
No 64
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=7.8e-43 Score=390.84 Aligned_cols=221 Identities=24% Similarity=0.379 Sum_probs=192.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||||+|+|+++ +.+|+|.++|+++.
T Consensus 3 ~L~~~nls~~y~~------------~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i~ 68 (402)
T PRK09536 3 MIDVSDLSVEFGD------------TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDVE 68 (402)
T ss_pred eEEEeeEEEEECC------------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEcC
Confidence 4999999999953 349999999999999999999999999999999999985 46899999999876
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
. ...++.+|||+|++.+++.+||+||+.++...+.. ......+..++++++++.+||.+..++.+. +||||
T Consensus 69 ~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~-----~LSgG 143 (402)
T PRK09536 69 ALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVT-----SLSGG 143 (402)
T ss_pred cCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChh-----hCCHH
Confidence 4 23456799999999998899999999986432110 001123456789999999999988887765 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||+|||+|+++|++|||||||+|||+.++.+++++|++++++|+|||+++|+++. +.++|||+++|++|++++.|+
T Consensus 144 erQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~-~~~~adrii~l~~G~iv~~G~ 222 (402)
T PRK09536 144 ERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDL-AARYCDELVLLADGRVRAAGP 222 (402)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHHhCCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999999999998789999999999985 888999999999999999999
Q ss_pred ccchh
Q 003437 283 PVALP 287 (820)
Q Consensus 283 ~~~~~ 287 (820)
++++.
T Consensus 223 ~~ev~ 227 (402)
T PRK09536 223 PADVL 227 (402)
T ss_pred HHHHh
Confidence 98764
No 65
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=8.1e-43 Score=362.30 Aligned_cols=210 Identities=32% Similarity=0.563 Sum_probs=180.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++.. ..+.+|+|+||++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~~--------~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~ 70 (218)
T cd03255 1 IELKNLSKTYGGGG--------EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISK 70 (218)
T ss_pred CeEeeeEEEecCCC--------cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhh
Confidence 57899999995311 01359999999999999999999999999999999999885 468999999998753
Q ss_pred cc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 003437 128 SY-------MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS 200 (820)
Q Consensus 128 ~~-------~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS 200 (820)
.. .++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+||++..++.++ .||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 142 (218)
T cd03255 71 LSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYPS-----ELS 142 (218)
T ss_pred cchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcChh-----hcC
Confidence 21 2456899999999999999999999876543 12334455678999999999887777664 699
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++. +. +||++++|++|++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~-~~d~v~~l~~G~i 218 (218)
T cd03255 143 GGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-AE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-Hh-hhcEEEEeeCCcC
Confidence 9999999999999999999999999999999999999999999987 59999999999975 55 8999999999974
No 66
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-43 Score=370.06 Aligned_cols=228 Identities=29% Similarity=0.429 Sum_probs=196.7
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECCEe
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGKP 124 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G~~ 124 (820)
|+++||+.+|.... +..++++||||++++||++||+|.||||||||.++|.|+++.. ..+|+|.|+|++
T Consensus 2 L~v~nL~v~f~~~~--------g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~ 73 (316)
T COG0444 2 LEVKNLSVSFPTDA--------GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKD 73 (316)
T ss_pred ceEeeeEEEEecCC--------ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcc
Confidence 78999999996532 2346999999999999999999999999999999999999621 367999999998
Q ss_pred CCCc-------cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHHcCCCccccccccCC
Q 003437 125 VTTS-------YMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSI-SRDEKKKRVYELLDQLGLRSATHTYIGNE 194 (820)
Q Consensus 125 ~~~~-------~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~ig~~ 194 (820)
+... .+.+.++|||||+ .|.|.+||.+.+.-....+. .. .+++..+++.++|+.+||.+... +-+.
T Consensus 74 l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~--~~~~ 149 (316)
T COG0444 74 LLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPER--RLKS 149 (316)
T ss_pred cccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHH--HHhh
Confidence 7432 1235689999997 58999999999988876542 22 46677889999999999986432 2256
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
+|.+|||||||||.||.||+.+|++||+||||++||...+.+|+++|+++.+ .|.++|++|||+.. +.++||||+||+
T Consensus 150 YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v-va~~aDri~VMY 228 (316)
T COG0444 150 YPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMY 228 (316)
T ss_pred CCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcceEEEEE
Confidence 7889999999999999999999999999999999999999999999999987 69999999999985 889999999999
Q ss_pred CCeEEEEcCccchhh
Q 003437 274 RGRLVYMGSPVALPA 288 (820)
Q Consensus 274 ~G~iv~~G~~~~~~~ 288 (820)
.|+||+.|+++++..
T Consensus 229 aG~iVE~g~~~~i~~ 243 (316)
T COG0444 229 AGRIVEEGPVEEIFK 243 (316)
T ss_pred CcEEEEeCCHHHHhc
Confidence 999999999987754
No 67
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.6e-42 Score=365.44 Aligned_cols=218 Identities=33% Similarity=0.551 Sum_probs=189.6
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|++++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++ +++|+|.++|.++..
T Consensus 2 l~~~~l~~~~~~------------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 67 (240)
T PRK09493 2 IEFKNVSKHFGP------------TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVND 67 (240)
T ss_pred EEEEeEEEEECC------------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCc
Confidence 789999999853 249999999999999999999999999999999999875 468999999998753
Q ss_pred c-----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 128 S-----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 128 ~-----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
. ..++.++|++|++.+++.+||+||+.+...... .....+..+++.++++.+||++..++.+. .||||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G 140 (240)
T PRK09493 68 PKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYPS-----ELSGG 140 (240)
T ss_pred CChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcChh-----hcCHH
Confidence 1 235678999999999999999999988642111 23445556778999999999877777654 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||+||++|+.+|++|||||||+|||+.++..+.++|++++++|+|||++||+++. +..+||++++|++|++++.|+
T Consensus 141 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~G~i~~~g~ 219 (240)
T PRK09493 141 QQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGF-AEKVASRLIFIDKGRIAEDGD 219 (240)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEeeCC
Confidence 9999999999999999999999999999999999999999998779999999999985 778899999999999999998
Q ss_pred ccchh
Q 003437 283 PVALP 287 (820)
Q Consensus 283 ~~~~~ 287 (820)
++++.
T Consensus 220 ~~~~~ 224 (240)
T PRK09493 220 PQVLI 224 (240)
T ss_pred HHHHh
Confidence 77653
No 68
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.9e-42 Score=371.15 Aligned_cols=220 Identities=26% Similarity=0.443 Sum_probs=190.4
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.|++ +.+|+|+||+|++||+++|+|||||||||||++|+|+.+ +++|+|.++|+++
T Consensus 6 ~~l~~~~l~~~~~~------------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (269)
T PRK11831 6 NLVDMRGVSFTRGN------------RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENI 71 (269)
T ss_pred ceEEEeCeEEEECC------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 35999999999853 249999999999999999999999999999999999985 4689999999987
Q ss_pred CCc------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 003437 126 TTS------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 126 ~~~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~L 199 (820)
... ..++.++|++|++.+++.+||.||+.+...... ..+..+..+++.++++.+||.+..++.++ .|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMPS-----EL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hC
Confidence 531 124568999999999999999999988653221 12344455678899999999887777765 69
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. +.++||++++|++|+++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~-~~~~~d~v~~l~~G~i~ 223 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPE-VLSIADHAYIVADKKIV 223 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH-HHHhhCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999765 8999999999874 78899999999999999
Q ss_pred EEcCccchh
Q 003437 279 YMGSPVALP 287 (820)
Q Consensus 279 ~~G~~~~~~ 287 (820)
+.|+++++.
T Consensus 224 ~~g~~~~~~ 232 (269)
T PRK11831 224 AHGSAQALQ 232 (269)
T ss_pred EeCCHHHHh
Confidence 999887653
No 69
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.1e-42 Score=385.03 Aligned_cols=206 Identities=28% Similarity=0.458 Sum_probs=185.5
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCcc---c----cceEEEEccCCCCC
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSY---M----KMVSSYVMQDDQLF 144 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~---~----~~~~gyv~Q~~~l~ 144 (820)
+.+|+|+||+|++||+++|+|||||||||||++|+|+++ +++|+|+++|+++.... . ++.++||+|++.++
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 459999999999999999999999999999999999985 46899999999986421 2 56799999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 003437 145 PMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDE 224 (820)
Q Consensus 145 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDE 224 (820)
|++||+||+.|..... +.++++..+++.++++.+||++..+++++ .|||||||||+|||||+.+|++|||||
T Consensus 84 ~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p~-----~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 84 PHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYPD-----ELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred CCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999999999987653 34566777899999999999887777765 699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchhh
Q 003437 225 PTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPA 288 (820)
Q Consensus 225 PtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 288 (820)
||++||+.++..+.+.|+++.++ |+|||++||+++. +..+||+|++|++|+++..|+++++..
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~e-a~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDE-AIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 99999999999999999999764 9999999999984 788999999999999999999988754
No 70
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-42 Score=371.00 Aligned_cols=218 Identities=26% Similarity=0.394 Sum_probs=188.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+.. +.+|+|+|++|++||+++|+||||||||||+++|+|+++ +++|+|.++|+++.
T Consensus 4 ~l~~~~l~~~~~~~-----------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 70 (274)
T PRK13647 4 IIEVEDLHFRYKDG-----------TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREVN 70 (274)
T ss_pred eEEEEEEEEEeCCC-----------CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 59999999999521 249999999999999999999999999999999999885 46899999999885
Q ss_pred Cc---cccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 TS---YMKMVSSYVMQDDQ-LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
.. ..++.++||+|++. .++..||.||+.|..... ..++.+..+++.++++.+||.+..++.+. .||||
T Consensus 71 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgG 142 (274)
T PRK13647 71 AENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPPY-----HLSYG 142 (274)
T ss_pred CCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCChh-----hCCHH
Confidence 42 23456899999973 344579999999875432 24455556788999999999887777765 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||+||+||+.+|++|||||||+|||+.++..+.++|++++++|.|||++||+++. +.++||++++|++|++++.|+
T Consensus 143 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~-~~~~~d~i~~l~~G~i~~~g~ 221 (274)
T PRK13647 143 QKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDL-AAEWADQVIVLKEGRVLAEGD 221 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999998779999999999974 778999999999999999999
Q ss_pred ccch
Q 003437 283 PVAL 286 (820)
Q Consensus 283 ~~~~ 286 (820)
++++
T Consensus 222 ~~~~ 225 (274)
T PRK13647 222 KSLL 225 (274)
T ss_pred HHHh
Confidence 8653
No 71
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=2e-42 Score=366.86 Aligned_cols=219 Identities=30% Similarity=0.501 Sum_probs=189.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++ +++|+|.++|+++.
T Consensus 3 ~l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (250)
T PRK11264 3 AIEVKNLVKKFHG------------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITID 68 (250)
T ss_pred cEEEeceEEEECC------------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcc
Confidence 4999999999953 249999999999999999999999999999999999875 46899999999875
Q ss_pred Cc-----------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 003437 127 TS-----------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEG 195 (820)
Q Consensus 127 ~~-----------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~ 195 (820)
.. ..++.++||+|++.+++.+||+||+.++..... ....++..+++.++++.+||.+..++.++
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--- 143 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYPR--- 143 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCChh---
Confidence 21 234568999999999998999999988643211 12344556778999999999877766654
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +.++||++++|++|
T Consensus 144 --~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~-~~~~~d~i~~l~~G 220 (250)
T PRK11264 144 --RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSF-ARDVADRAIFMDQG 220 (250)
T ss_pred --hCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEEECC
Confidence 699999999999999999999999999999999999999999999998779999999999974 77899999999999
Q ss_pred eEEEEcCccchh
Q 003437 276 RLVYMGSPVALP 287 (820)
Q Consensus 276 ~iv~~G~~~~~~ 287 (820)
++++.|+++++.
T Consensus 221 ~i~~~~~~~~~~ 232 (250)
T PRK11264 221 RIVEQGPAKALF 232 (250)
T ss_pred EEEEeCCHHHHh
Confidence 999999887653
No 72
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-42 Score=365.31 Aligned_cols=217 Identities=27% Similarity=0.498 Sum_probs=187.8
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++. +.+|+++|++|++||+++|+||||||||||+++|+|+++ +++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~-----------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 67 (242)
T cd03295 1 IEFENVTKRYGGG-----------KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIRE 67 (242)
T ss_pred CEEEEEEEEeCCc-----------ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCc
Confidence 4789999998531 249999999999999999999999999999999999875 468999999998753
Q ss_pred c---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCCCCCCCChH
Q 003437 128 S---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS--ATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 128 ~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~ig~~~~~~LSGG 202 (820)
. ..++.++|++|++.+++.+||+||+.+....+ ..+.++..+++.++++.+||.+ ..++.+ +.||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~G 139 (242)
T cd03295 68 QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYP-----HELSGG 139 (242)
T ss_pred CChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCHH
Confidence 1 23457899999999999999999999875543 2344555677899999999985 556555 469999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.++||++++|++|++++.|
T Consensus 140 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~-~~~~~d~i~~l~~G~i~~~~ 218 (242)
T cd03295 140 QQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDE-AFRLADRIAIMKNGEIVQVG 218 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH-HHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999999999875 8999999999974 78899999999999999999
Q ss_pred Cccch
Q 003437 282 SPVAL 286 (820)
Q Consensus 282 ~~~~~ 286 (820)
+++++
T Consensus 219 ~~~~~ 223 (242)
T cd03295 219 TPDEI 223 (242)
T ss_pred CHHHH
Confidence 87665
No 73
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.1e-43 Score=355.34 Aligned_cols=221 Identities=26% Similarity=0.500 Sum_probs=206.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|++++|+++|+. +.+++|+||++++|++.+++|||||||||++|+|.|++. +++|+|.++|.+++
T Consensus 2 ~L~ie~vtK~Fg~------------k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~ 67 (300)
T COG4152 2 ALEIEGVTKSFGD------------KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLS 67 (300)
T ss_pred ceEEecchhccCc------------eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchh
Confidence 4899999999965 359999999999999999999999999999999999985 46899999999997
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
.. .+.+|||+|.+.-|+|.+||.|.|.|.++++ ++++++.+++++.+|+++++......+|. +||.|++|+
T Consensus 68 ~~-~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kIk-----~LSKGnqQK 138 (300)
T COG4152 68 QE-IKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKIK-----ELSKGNQQK 138 (300)
T ss_pred hh-hhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchHH-----HhhhhhhHH
Confidence 54 4678999999999999999999999999987 68899999999999999999998888875 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccch
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL 286 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 286 (820)
+.+..+++++|+++|||||+|||||.+.+.+-+.+.+++++|.|||+++|.++. +.++||++++|++|+.|.+|+.+++
T Consensus 139 IQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~-vEeLCD~llmL~kG~~V~~G~v~~i 217 (300)
T COG4152 139 IQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEH-VEELCDRLLMLKKGQTVLYGTVEDI 217 (300)
T ss_pred HHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHH-HHHHhhhhheecCCceEEeccHHHH
Confidence 999999999999999999999999999999999999999999999999999985 8999999999999999999999998
Q ss_pred hhhhh
Q 003437 287 PAHLA 291 (820)
Q Consensus 287 ~~~f~ 291 (820)
...|.
T Consensus 218 r~~~G 222 (300)
T COG4152 218 RRSFG 222 (300)
T ss_pred HHhcC
Confidence 87554
No 74
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-42 Score=377.20 Aligned_cols=223 Identities=29% Similarity=0.416 Sum_probs=190.0
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.|+.+. ...+.+|+|||++|++||+++|+|+||||||||+++|+|+++ +.+|+|+++|.++
T Consensus 20 ~~l~~~nl~~~y~~~~-------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~ 90 (320)
T PRK13631 20 IILRVKNLYCVFDEKQ-------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI 90 (320)
T ss_pred ceEEEEeEEEEeCCCC-------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence 4599999999996421 012359999999999999999999999999999999999985 4689999999887
Q ss_pred CCc-------------------cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 003437 126 TTS-------------------YMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR 184 (820)
Q Consensus 126 ~~~-------------------~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 184 (820)
... ..++.++||+|++ .+++. ||+||+.|+.... ..+.++..+++.++++.+||+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 431 2356789999987 56764 9999998875432 235556667899999999996
Q ss_pred -ccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHH
Q 003437 185 -SATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQ 263 (820)
Q Consensus 185 -~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 263 (820)
+..++.+ ..|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++. +.
T Consensus 167 ~~~~~~~~-----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~-~~ 240 (320)
T PRK13631 167 DSYLERSP-----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEH-VL 240 (320)
T ss_pred hhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HH
Confidence 4555554 4799999999999999999999999999999999999999999999998789999999999974 77
Q ss_pred hhcCEEEEEeCCeEEEEcCccchh
Q 003437 264 MLLDRIIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 264 ~~~D~v~lL~~G~iv~~G~~~~~~ 287 (820)
++||++++|++|++++.|+++++.
T Consensus 241 ~~adri~vl~~G~i~~~g~~~~~~ 264 (320)
T PRK13631 241 EVADEVIVMDKGKILKTGTPYEIF 264 (320)
T ss_pred HhCCEEEEEECCEEEEeCCHHHHh
Confidence 889999999999999999998764
No 75
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.2e-42 Score=361.79 Aligned_cols=214 Identities=31% Similarity=0.551 Sum_probs=184.5
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++ +++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (222)
T cd03224 1 LEVENLNAGYGK------------SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITG 66 (222)
T ss_pred CEEeeEEeecCC------------eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCC
Confidence 578999999853 249999999999999999999999999999999999985 468999999998753
Q ss_pred cc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCCCCCCCChH
Q 003437 128 SY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQL-GLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 128 ~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~ig~~~~~~LSGG 202 (820)
.. .++.++|++|++.+++.+||+||+.+...... ..+..+++.++++.+ ++.+..++.+. .||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~~-----~LS~G 136 (222)
T cd03224 67 LPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLAG-----TLSGG 136 (222)
T ss_pred CCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCchh-----hCCHH
Confidence 21 24568999999999999999999998754321 223345677888888 57776666654 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|.|||++||+++. +.++||++++|++|+++..|+
T Consensus 137 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~G~i~~~~~ 215 (222)
T cd03224 137 EQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARF-ALEIADRAYVLERGRVVLEGT 215 (222)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhccEEEEeeCCeEEEeCC
Confidence 9999999999999999999999999999999999999999998788999999999974 788999999999999999998
Q ss_pred ccch
Q 003437 283 PVAL 286 (820)
Q Consensus 283 ~~~~ 286 (820)
++++
T Consensus 216 ~~~~ 219 (222)
T cd03224 216 AAEL 219 (222)
T ss_pred HHHH
Confidence 7655
No 76
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-42 Score=374.82 Aligned_cols=222 Identities=27% Similarity=0.407 Sum_probs=189.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+.... ..+.+|+|||++|++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++.
T Consensus 2 ~l~~~~l~~~y~~~~~-------~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (290)
T PRK13634 2 DITFQKVEHRYQYKTP-------FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEEECCCCc-------ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 3899999999963210 11359999999999999999999999999999999999985 46899999999874
Q ss_pred C-------ccccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 003437 127 T-------SYMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGR 196 (820)
Q Consensus 127 ~-------~~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~ 196 (820)
. ...++.+|||+|++ .+++ .||.||+.|+.... ..+.++..++++++++.+||. +..++.+.
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~---- 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSPF---- 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCcc----
Confidence 2 12346789999986 4554 69999999875432 245566667899999999996 55666654
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.++|++++++ |.|||++||+++. +.++||||++|++|
T Consensus 145 -~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~-~~~~~drv~~l~~G 222 (290)
T PRK13634 145 -ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMED-AARYADQIVVMHKG 222 (290)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECC
Confidence 79999999999999999999999999999999999999999999999865 9999999999984 78899999999999
Q ss_pred eEEEEcCccchh
Q 003437 276 RLVYMGSPVALP 287 (820)
Q Consensus 276 ~iv~~G~~~~~~ 287 (820)
++++.|+++++.
T Consensus 223 ~i~~~g~~~~~~ 234 (290)
T PRK13634 223 TVFLQGTPREIF 234 (290)
T ss_pred EEEEECCHHHHh
Confidence 999999988764
No 77
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.5e-42 Score=379.54 Aligned_cols=233 Identities=27% Similarity=0.413 Sum_probs=194.1
Q ss_pred ceEEEEEEEEEECccccccccc-ccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVW-ITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~-~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
..|+++||+++|..+......+ ......+|+||||+|++||+++|+|+||||||||+++|+|++. +.+|+|+++|++
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~ 84 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKD 84 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEE
Confidence 3599999999996421000000 0112469999999999999999999999999999999999985 468999999999
Q ss_pred CCCc------cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 003437 125 VTTS------YMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEG 195 (820)
Q Consensus 125 ~~~~------~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~ 195 (820)
+... ..++.++||+|++ .++|.+||.||+.+......+ ..++++.++++.++++.+||. +..++++
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~p---- 159 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRYP---- 159 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCCc----
Confidence 8532 1346799999997 589999999999987654311 245667778899999999995 3455554
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
.+|||||||||+||+||+.+|++||+||||+|||+.++.+++++|+++.++ |.|+|++|||+.. +.++||+|++|++
T Consensus 160 -~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~-~~~~~dri~vl~~ 237 (331)
T PRK15079 160 -HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAV-VKHISDRVLVMYL 237 (331)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEEC
Confidence 579999999999999999999999999999999999999999999999875 9999999999985 7789999999999
Q ss_pred CeEEEEcCccchh
Q 003437 275 GRLVYMGSPVALP 287 (820)
Q Consensus 275 G~iv~~G~~~~~~ 287 (820)
|++++.|+++++.
T Consensus 238 G~ive~g~~~~i~ 250 (331)
T PRK15079 238 GHAVELGTYDEVY 250 (331)
T ss_pred CEEEEEcCHHHHH
Confidence 9999999987765
No 78
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-42 Score=378.48 Aligned_cols=229 Identities=25% Similarity=0.350 Sum_probs=191.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceEEEECCEe
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG--SLEGSVRIDGKP 124 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~--~~~G~I~i~G~~ 124 (820)
.|+++||++.|+.+. +...+|+||||+|++||+++|+|+||||||||+++|+|++.+. +++|+|.++|++
T Consensus 3 ~L~v~~l~~~~~~~~--------~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 3 LLNVDKLSVHFGDES--------APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred eEEEeCeEEEECCCC--------ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 489999999996421 1235999999999999999999999999999999999998532 368999999999
Q ss_pred CCCcc-------ccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 003437 125 VTTSY-------MKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEG 195 (820)
Q Consensus 125 ~~~~~-------~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~ 195 (820)
+.... .++.++||+|++ .+.|.+||.+++........ ...+++.++++.++|+.+||.+..+. -+.+
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~--l~~~ 150 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASR--LDVY 150 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHH--HhCC
Confidence 75321 224689999998 48899999999877654331 23556667889999999999752211 1234
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
+++|||||||||+||+||+.+|++||+||||+|||+.++.+++++|+++++ .|.|+|++|||++. +.++||+|++|++
T Consensus 151 p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~-~~~~adri~vm~~ 229 (326)
T PRK11022 151 PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLAL-VAEAAHKIIVMYA 229 (326)
T ss_pred chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC
Confidence 468999999999999999999999999999999999999999999999986 59999999999984 7789999999999
Q ss_pred CeEEEEcCccchhh
Q 003437 275 GRLVYMGSPVALPA 288 (820)
Q Consensus 275 G~iv~~G~~~~~~~ 288 (820)
|++++.|+++++.+
T Consensus 230 G~ive~g~~~~~~~ 243 (326)
T PRK11022 230 GQVVETGKAHDIFR 243 (326)
T ss_pred CEEEEECCHHHHhh
Confidence 99999999887753
No 79
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-42 Score=376.25 Aligned_cols=222 Identities=26% Similarity=0.412 Sum_probs=189.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+++.. ....+|+|||++|++||+++|+||||||||||+|+|+|++++ ++|+|+++|.+..
T Consensus 2 ~i~~~~l~~~y~~~~~-------~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~~ 72 (305)
T PRK13651 2 QIKVKNIVKIFNKKLP-------TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEEECCCCC-------ccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceecc
Confidence 4899999999964210 113599999999999999999999999999999999999854 6799999987642
Q ss_pred C---------------------------ccccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 003437 127 T---------------------------SYMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYEL 177 (820)
Q Consensus 127 ~---------------------------~~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~ 177 (820)
. ...++.+|||+|++ .++ ..||+||+.|+.... +.++++..+++.++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~ 148 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSM---GVSKEEAKKRAAKY 148 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHc---CCCHHHHHHHHHHH
Confidence 1 12356789999985 445 469999999876532 34566777889999
Q ss_pred HHHcCCC-ccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEc
Q 003437 178 LDQLGLR-SATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIH 256 (820)
Q Consensus 178 l~~lgL~-~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H 256 (820)
++.+||. +..++.+ ..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||++||
T Consensus 149 l~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtH 223 (305)
T PRK13651 149 IELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223 (305)
T ss_pred HHHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEee
Confidence 9999996 5666665 479999999999999999999999999999999999999999999999878999999999
Q ss_pred CccHHHHhhcCEEEEEeCCeEEEEcCccchh
Q 003437 257 QPSYRIQMLLDRIIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 257 ~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 287 (820)
+++. +.++||||++|++|++++.|+++++.
T Consensus 224 d~~~-~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 224 DLDN-VLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred CHHH-HHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9974 77899999999999999999988764
No 80
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.6e-42 Score=357.55 Aligned_cols=207 Identities=32% Similarity=0.514 Sum_probs=181.4
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++ +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (208)
T cd03268 1 LKTNDLTKTYGK------------KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQK 66 (208)
T ss_pred CEEEEEEEEECC------------eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccc
Confidence 578999999853 249999999999999999999999999999999999885 468999999988753
Q ss_pred -ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 128 -SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 128 -~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
...++.++|++|++.+++.+||+||+.+....+ .. ..++++++++.+||.+..++.++ .||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 134 (208)
T cd03268 67 NIEALRRIGALIEAPGFYPNLTARENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKKVK-----GFSLGMKQR 134 (208)
T ss_pred hHHHHhhEEEecCCCccCccCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhhHh-----hCCHHHHHH
Confidence 123456899999999999999999998876432 11 23568889999999887777665 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++.. +..+||++++|++|++++.|
T Consensus 135 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~-~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 135 LGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSE-IQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-HHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999998889999999999974 77889999999999998765
No 81
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.1e-42 Score=367.23 Aligned_cols=220 Identities=30% Similarity=0.471 Sum_probs=186.1
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++ +++|+|.++|.++..
T Consensus 2 l~~~~l~~~~~~-----------~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 68 (243)
T TIGR02315 2 LEVENLSKVYPN-----------GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITK 68 (243)
T ss_pred eEEEeeeeecCC-----------CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhhh
Confidence 789999999851 1249999999999999999999999999999999999885 468999999998753
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 003437 128 S------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRL-----PPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGR 196 (820)
Q Consensus 128 ~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~ 196 (820)
. ..++.++|++|++.+++.+||+||+.++..... .......+..+++.++++.+||.+..++.+.
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 144 (243)
T TIGR02315 69 LRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRAD---- 144 (243)
T ss_pred CCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcc----
Confidence 1 135678999999999999999999987532100 0001123445678899999999877776654
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.++||++++|++|
T Consensus 145 -~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~-~~~~~d~v~~l~~G 222 (243)
T TIGR02315 145 -QLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDL-AKKYADRIVGLKAG 222 (243)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCeEEEEECC
Confidence 69999999999999999999999999999999999999999999999764 8999999999985 77899999999999
Q ss_pred eEEEEcCccch
Q 003437 276 RLVYMGSPVAL 286 (820)
Q Consensus 276 ~iv~~G~~~~~ 286 (820)
++++.|+++++
T Consensus 223 ~i~~~~~~~~~ 233 (243)
T TIGR02315 223 EIVFDGAPSEL 233 (243)
T ss_pred EEEecCCHHHh
Confidence 99999987664
No 82
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-42 Score=371.51 Aligned_cols=220 Identities=30% Similarity=0.467 Sum_probs=191.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++.. .+.+|+|+|++|++||+++|+||||||||||+++|+|+++ +.+|+|.++|.++.
T Consensus 4 ~l~~~~l~~~~~~~~---------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (279)
T PRK13650 4 IIEVKNLTFKYKEDQ---------EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLLT 72 (279)
T ss_pred eEEEEeEEEEcCCCC---------cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECC
Confidence 499999999996321 1349999999999999999999999999999999999985 46899999999985
Q ss_pred Cc---cccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 TS---YMKMVSSYVMQDD-QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
.. ..++.++||+|++ .+++..||+||+.|..... +.++++..+++.++++.+||++..++.++ .||||
T Consensus 73 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgG 144 (279)
T PRK13650 73 EENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREPA-----RLSGG 144 (279)
T ss_pred cCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----cCCHH
Confidence 32 2356789999997 3667789999999875432 34566667789999999999987777664 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|||||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++. + ..||++++|++|+++..|
T Consensus 145 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~dri~~l~~G~i~~~g 222 (279)
T PRK13650 145 QKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSDRVLVMKNGQVESTS 222 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999875 9999999999975 5 479999999999999999
Q ss_pred Cccchh
Q 003437 282 SPVALP 287 (820)
Q Consensus 282 ~~~~~~ 287 (820)
+++++.
T Consensus 223 ~~~~~~ 228 (279)
T PRK13650 223 TPRELF 228 (279)
T ss_pred CHHHHH
Confidence 988765
No 83
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-42 Score=350.93 Aligned_cols=218 Identities=30% Similarity=0.517 Sum_probs=188.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+..|+. .++|++||+++++||+++|+|+||+|||||||+|+|+.++ .+|+|.++|++++
T Consensus 3 mL~v~~l~~~YG~------------~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~--~~G~I~~~G~dit 68 (237)
T COG0410 3 MLEVENLSAGYGK------------IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP--RSGRIIFDGEDIT 68 (237)
T ss_pred ceeEEeEeecccc------------eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEECCeecC
Confidence 5999999999964 3599999999999999999999999999999999999854 4799999999997
Q ss_pred Cc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCCCCCCCCh
Q 003437 127 TS----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQL-GLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 127 ~~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~ig~~~~~~LSG 201 (820)
.. ..+..++||||...+||.|||+|||..++..+.. ++.....++++.+.| .|.+.++++-| .|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCCh
Confidence 53 2456689999999999999999999998764421 112222267777777 35667777776 5999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
||||.++|||||+.+|++|+|||||.||-|.-..+|.+.|++++++ |.||+++.++... +.+++||.++|.+|+++++
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~-Al~iaDr~yvle~Griv~~ 218 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARF-ALEIADRGYVLENGRIVLS 218 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHH-HHHhhCEEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999999999999975 7799999998875 7889999999999999999
Q ss_pred cCccchhh
Q 003437 281 GSPVALPA 288 (820)
Q Consensus 281 G~~~~~~~ 288 (820)
|+.+++..
T Consensus 219 G~~~eL~~ 226 (237)
T COG0410 219 GTAAELLA 226 (237)
T ss_pred cCHHHHhc
Confidence 99988864
No 84
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-42 Score=370.90 Aligned_cols=205 Identities=31% Similarity=0.475 Sum_probs=179.8
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc---c----ccceEEEEccCCCCC
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS---Y----MKMVSSYVMQDDQLF 144 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~---~----~~~~~gyv~Q~~~l~ 144 (820)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+++ +.+|+|.++|+++... . .++.++|++|++.++
T Consensus 37 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 114 (269)
T cd03294 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114 (269)
T ss_pred ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccC
Confidence 458999999999999999999999999999999999885 4689999999987531 1 135689999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 003437 145 PMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDE 224 (820)
Q Consensus 145 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDE 224 (820)
+.+||+||+.+..... .....+..+++.++++.+||.+..++.++ .|||||||||+||++|+.+|++|||||
T Consensus 115 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~lAral~~~p~illLDE 186 (269)
T cd03294 115 PHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPD-----ELSGGMQQRVGLARALAVDPDILLMDE 186 (269)
T ss_pred CCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999999999876432 12344556678999999999887777765 699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchh
Q 003437 225 PTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 225 PtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 287 (820)
||+|||+.++..+.+.|++++++ |+|||++||+++. +.++||++++|++|++++.|+++++.
T Consensus 187 Pt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~-~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 187 AFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDE-ALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999764 8999999999974 78899999999999999999887664
No 85
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-42 Score=371.95 Aligned_cols=223 Identities=28% Similarity=0.425 Sum_probs=189.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|+++. ...+.+|+|||++|++||+++|+||||||||||+|+|+|+++ +++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~y~~~~-------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~ 72 (286)
T PRK13646 2 TIRFDNVSYTYQKGT-------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITIT 72 (286)
T ss_pred EEEEEEEEEEECCCC-------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 489999999996321 012359999999999999999999999999999999999885 46899999999874
Q ss_pred Cc-------cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 003437 127 TS-------YMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGR 196 (820)
Q Consensus 127 ~~-------~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~ 196 (820)
.. ..++.+|||+|++ .+++ .||.||+.|+.... ..+.++..+++.++++.+||. +..++.+
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~----- 143 (286)
T PRK13646 73 HKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSP----- 143 (286)
T ss_pred cccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc-----
Confidence 31 2456799999986 4666 49999999875432 245566677899999999996 5666655
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
+.|||||||||+||++|+.+|++|||||||+|||+.++..+.++|+++++ .|+|||++||+++. +.++||++++|++|
T Consensus 144 ~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~-~~~~~dri~~l~~G 222 (286)
T PRK13646 144 FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNE-VARYADEVIVMKEG 222 (286)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEEEECC
Confidence 47999999999999999999999999999999999999999999999986 59999999999974 77899999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+++++..
T Consensus 223 ~i~~~g~~~~~~~ 235 (286)
T PRK13646 223 SIVSQTSPKELFK 235 (286)
T ss_pred EEEEECCHHHHHh
Confidence 9999999877643
No 86
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.3e-42 Score=356.69 Aligned_cols=207 Identities=35% Similarity=0.566 Sum_probs=180.5
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|++++|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++ +.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~-----------~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~ 68 (214)
T TIGR02673 2 IEFHNVSKAYPG-----------GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVNR 68 (214)
T ss_pred EEEEeeeEEeCC-----------CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccc
Confidence 789999999842 1249999999999999999999999999999999999875 468999999998753
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 128 S------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 128 ~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
. ..++.++|++|++.+++.+||.||+.+....+ ........+++.++++.+||.+..++.+. .|||
T Consensus 69 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 140 (214)
T TIGR02673 69 LRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFPE-----QLSG 140 (214)
T ss_pred CCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCH
Confidence 1 23467899999999999999999999876543 13344556788999999999877776654 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +..+||++++|++|+
T Consensus 141 G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~-~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 141 GEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSL-VDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999999999999998779999999999974 788899999999985
No 87
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=4.9e-42 Score=363.40 Aligned_cols=218 Identities=25% Similarity=0.415 Sum_probs=186.9
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC---CceEEEECCEe
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGS---LEGSVRIDGKP 124 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~---~~G~I~i~G~~ 124 (820)
|+++||+++|++ +.+|+|+|++|++||+++|+||||||||||+|+|+|+++|.+ .+|+|.++|++
T Consensus 2 l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~ 69 (247)
T TIGR00972 2 IEIENLNLFYGE------------KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQD 69 (247)
T ss_pred EEEEEEEEEECC------------eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEE
Confidence 789999999853 248999999999999999999999999999999999986421 28999999998
Q ss_pred CCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCCC
Q 003437 125 VTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR----SATHTYIGNEG 195 (820)
Q Consensus 125 ~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~~ 195 (820)
+.. ...++.++|++|++.+++ +||.||+.+....+. ..+..+..+++.++++.+||. +..++.+
T Consensus 70 ~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~---- 142 (247)
T TIGR00972 70 IYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSA---- 142 (247)
T ss_pred ccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCc----
Confidence 753 123567899999999988 899999998765431 123455567889999999997 5555554
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
..|||||||||+|||+|+.+|++|||||||+|||+.++..+.++|++++++ .|||+++|+++. +..+||++++|++|
T Consensus 143 -~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~~~-~~~~~d~i~~l~~G 219 (247)
T TIGR00972 143 -LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNMQQ-AARISDRTAFFYDG 219 (247)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCHHH-HHHhCCEEEEEECC
Confidence 479999999999999999999999999999999999999999999999774 899999999974 78899999999999
Q ss_pred eEEEEcCccchh
Q 003437 276 RLVYMGSPVALP 287 (820)
Q Consensus 276 ~iv~~G~~~~~~ 287 (820)
++++.|+++++.
T Consensus 220 ~i~~~~~~~~~~ 231 (247)
T TIGR00972 220 ELVEYGPTEQIF 231 (247)
T ss_pred EEEEeCCHHHHH
Confidence 999999887653
No 88
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=5.5e-42 Score=376.90 Aligned_cols=230 Identities=25% Similarity=0.390 Sum_probs=194.2
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCceEEEECCEe
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG-SLEGSVRIDGKP 124 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~-~~~G~I~i~G~~ 124 (820)
..|+++||++.|..+. +...+|+||||+|++||+++|+|+||||||||+++|+|++++. ..+|+|.++|++
T Consensus 11 ~~L~i~~l~~~~~~~~--------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 11 ALLDVKDLRVTFSTPD--------GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred ceEEEeCeEEEEecCC--------CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 3599999999995321 1245999999999999999999999999999999999998642 148999999999
Q ss_pred CCCc---c---c-cceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 003437 125 VTTS---Y---M-KMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEG 195 (820)
Q Consensus 125 ~~~~---~---~-~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~ 195 (820)
+... . . ++.++||+|++ .++|.+|+.+++.+...... ..+.++..+++.++++.+||.+..+. + +.+
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~-~-~~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR-M-KMY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH-h-cCC
Confidence 8532 1 1 24699999998 68899999999987665432 24566667789999999999754322 2 345
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
+++|||||||||+||+||+.+|++||+||||+|||+.++.+++++|++++++ |.|+|++|||++. +.++||++++|++
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~-~~~~~Dri~vm~~ 237 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGV-VAGICDKVLVMYA 237 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHH-HHHhCCEEEEEEC
Confidence 6789999999999999999999999999999999999999999999999875 9999999999984 7789999999999
Q ss_pred CeEEEEcCccchhh
Q 003437 275 GRLVYMGSPVALPA 288 (820)
Q Consensus 275 G~iv~~G~~~~~~~ 288 (820)
|++++.|+++++..
T Consensus 238 G~ive~g~~~~i~~ 251 (330)
T PRK09473 238 GRTMEYGNARDVFY 251 (330)
T ss_pred CEEEEECCHHHHHh
Confidence 99999999988753
No 89
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=3.6e-42 Score=356.32 Aligned_cols=208 Identities=32% Similarity=0.554 Sum_probs=181.1
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||++.|+++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++ +++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~-----------~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 67 (214)
T cd03292 1 IEFINVTKTYPNG-----------TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSD 67 (214)
T ss_pred CEEEEEEEEeCCC-----------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEccc
Confidence 4789999998531 249999999999999999999999999999999999875 468999999998753
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 128 S------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 128 ~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
. ..++.++|++|++.+++.+||+||+.+....+ ..+.++..+++.++++.+||++..++.++ +|||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 139 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALPA-----ELSG 139 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChh-----hcCH
Confidence 1 23457899999999999999999999876543 13445556788999999999887777664 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
|||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++.. +..+||++++|++|++
T Consensus 140 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~-~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKEL-VDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999999999998779999999999974 7778999999999974
No 90
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=7.2e-42 Score=364.28 Aligned_cols=220 Identities=28% Similarity=0.461 Sum_probs=189.2
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++ +++|+|.++|.++
T Consensus 4 ~~l~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 69 (257)
T PRK10619 4 NKLNVIDLHKRYGE------------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTI 69 (257)
T ss_pred ccEEEeeeEEEECC------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 34999999999953 249999999999999999999999999999999999885 4679999999887
Q ss_pred CC----------------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-c
Q 003437 126 TT----------------SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT-H 188 (820)
Q Consensus 126 ~~----------------~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~ 188 (820)
.. ...++.++|++|++.+++.+||+||+.++..... .....+..+++.++++.+||.+.. +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~ 147 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQG 147 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 42 1234678999999999999999999987542111 134455567889999999998753 5
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCE
Q 003437 189 TYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDR 268 (820)
Q Consensus 189 ~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 268 (820)
+.+ ..||||||||++||++|+.+|++|||||||+|||+.++..+.++|++++++|+|||++||+++. +..+||+
T Consensus 148 ~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~-~~~~~d~ 221 (257)
T PRK10619 148 KYP-----VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF-ARHVSSH 221 (257)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCE
Confidence 544 4799999999999999999999999999999999999999999999998789999999999974 7788999
Q ss_pred EEEEeCCeEEEEcCccchh
Q 003437 269 IIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 269 v~lL~~G~iv~~G~~~~~~ 287 (820)
+++|++|++++.|+++++.
T Consensus 222 i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 222 VIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred EEEEECCEEEEeCCHHHhh
Confidence 9999999999999887653
No 91
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=7.6e-42 Score=359.51 Aligned_cols=217 Identities=34% Similarity=0.533 Sum_probs=187.9
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|++++|++ +.+|+|+|++|++||+++|+||||||||||+++|+|+.+ +++|+|.++|.++..
T Consensus 2 l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~~ 67 (236)
T TIGR03864 2 LEVAGLSFAYGA------------RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLRR 67 (236)
T ss_pred EEEEeeEEEECC------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccc
Confidence 789999999853 249999999999999999999999999999999999885 468999999998753
Q ss_pred c--cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 128 S--YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 128 ~--~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
. ..++.++|++|++.+++.+||+||+.+....+ ..+..+..+++.++++.+||.+..++.++ .|||||||
T Consensus 68 ~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~q 139 (236)
T TIGR03864 68 APRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVR-----ELNGGHRR 139 (236)
T ss_pred CChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHH
Confidence 2 22346899999998888899999998875443 23344456678999999999887777765 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
|++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +|.|||+++|+++. +. .||++++|++|++++.|+++
T Consensus 140 rl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~G~i~~~~~~~ 217 (236)
T TIGR03864 140 RVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHRGRVLADGAAA 217 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeCCeEEEeCCHH
Confidence 99999999999999999999999999999999999999985 58999999999985 55 49999999999999999887
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 218 ~~~~ 221 (236)
T TIGR03864 218 ELRG 221 (236)
T ss_pred HHHH
Confidence 6643
No 92
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2e-42 Score=356.16 Aligned_cols=204 Identities=31% Similarity=0.496 Sum_probs=175.2
Q ss_pred EEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc
Q 003437 49 EFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS 128 (820)
Q Consensus 49 ~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~ 128 (820)
+++||+++|++. +.+|+|+||++++||+++|+|||||||||||++|+|+++ +++|+|.++|.++...
T Consensus 1 ~~~~l~~~~~~~-----------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~ 67 (205)
T cd03226 1 RIENISFSYKKG-----------TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAK 67 (205)
T ss_pred CcccEEEEeCCc-----------CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhH
Confidence 367899988531 249999999999999999999999999999999999885 4689999999987543
Q ss_pred cccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 003437 129 YMKMVSSYVMQDDQ-LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRV 207 (820)
Q Consensus 129 ~~~~~~gyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv 207 (820)
..++.++|++|++. .+..+||+||+.+..... . ...+++.++++.+||.+..++.+. .||||||||+
T Consensus 68 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~-----~--~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv 135 (205)
T cd03226 68 ERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL-----D--AGNEQAETVLKDLDLYALKERHPL-----SLSGGQKQRL 135 (205)
T ss_pred HhhcceEEEecChhhhhhhccHHHHHhhhhhhc-----C--ccHHHHHHHHHHcCCchhcCCCch-----hCCHHHHHHH
Confidence 44567899999974 234579999998865422 1 113568899999999987777765 6999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 208 SIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 208 ~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +.++||++++|++|+++
T Consensus 136 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~-~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 136 AIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEF-LAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999999999999998789999999999974 77899999999999875
No 93
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=6.2e-42 Score=361.43 Aligned_cols=223 Identities=26% Similarity=0.343 Sum_probs=185.7
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+|+|++|++||+++|+||||||||||+|+|+|+....+++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~ 68 (243)
T TIGR01978 1 LKIKDLHVSVED------------KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLE 68 (243)
T ss_pred CeEeeEEEEECC------------EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCC
Confidence 578999999953 24999999999999999999999999999999999985223578999999998753
Q ss_pred c---c-ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC----CCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCC
Q 003437 128 S---Y-MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPP----SISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRRG 198 (820)
Q Consensus 128 ~---~-~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~----~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~ 198 (820)
. . .+..++|++|++.+++.+|++|++.+........ ..+..+..+++.++++.+||. +..++.++ ..
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~ 144 (243)
T TIGR01978 69 LEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EG 144 (243)
T ss_pred CCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cC
Confidence 2 1 2334799999999999999999998865432110 112334456789999999997 45565543 14
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhh-cCEEEEEeCCeE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQML-LDRIIVLARGRL 277 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~lL~~G~i 277 (820)
|||||||||+||++|+.+|++|||||||+|||+.++..+.++|++++++|.|||++||+++. +..+ ||++++|++|++
T Consensus 145 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~-~~~~~~d~i~~l~~G~i 223 (243)
T TIGR01978 145 FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRL-LNYIKPDYVHVLLDGRI 223 (243)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHH-HHhhcCCeEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999998789999999999974 6777 899999999999
Q ss_pred EEEcCccchh
Q 003437 278 VYMGSPVALP 287 (820)
Q Consensus 278 v~~G~~~~~~ 287 (820)
++.|+++++.
T Consensus 224 ~~~g~~~~~~ 233 (243)
T TIGR01978 224 VKSGDVELAK 233 (243)
T ss_pred EEecCHHHhc
Confidence 9999886443
No 94
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-42 Score=362.40 Aligned_cols=219 Identities=26% Similarity=0.472 Sum_probs=189.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++ +++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~~------------~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (241)
T PRK10895 3 TLTAKNLAKAYKG------------RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDIS 68 (241)
T ss_pred eEEEeCcEEEeCC------------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 4899999999853 249999999999999999999999999999999999875 46899999999875
Q ss_pred Cc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 TS----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
.. ..++.++|++|++.+++.+||.||+.+...... ..+.++...+++++++.+||.+..++.++ .||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMGQ-----SLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcchh-----hCCHH
Confidence 32 134568999999999998999999987653321 12344556778999999999877666654 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|+++. +..+||++++|++|++++.|+
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~-~~~~~d~v~~l~~G~i~~~~~ 220 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRE-TLAVCERAYIVSQGHLIAHGT 220 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHH-HHHhcCEEEEEeCCeEEeeCC
Confidence 9999999999999999999999999999999999999999998789999999999974 788999999999999999998
Q ss_pred ccchh
Q 003437 283 PVALP 287 (820)
Q Consensus 283 ~~~~~ 287 (820)
++++.
T Consensus 221 ~~~~~ 225 (241)
T PRK10895 221 PTEIL 225 (241)
T ss_pred HHHHh
Confidence 87653
No 95
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-42 Score=361.54 Aligned_cols=216 Identities=27% Similarity=0.427 Sum_probs=186.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+. +.+|+++|++|++||+++|+||||||||||+++|+|+++ +++|+|.++|+++.
T Consensus 5 ~l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 70 (237)
T PRK11614 5 MLSFDKVSAHYGK------------IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDIT 70 (237)
T ss_pred EEEEEeEEEeeCC------------ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEecC
Confidence 5999999999853 349999999999999999999999999999999999885 46899999999875
Q ss_pred Cc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCCCCCCCCh
Q 003437 127 TS----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQL-GLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 127 ~~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~ig~~~~~~LSG 201 (820)
.. ..++.++|++|++.+++.+||.||+.+..... ...+..+.++++++.+ ++.+..++.+ ..|||
T Consensus 71 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~ 140 (237)
T PRK11614 71 DWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRA-----GTMSG 140 (237)
T ss_pred CCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCch-----hhCCH
Confidence 42 13456899999999999999999998864321 1223345677788888 5766666554 46999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.++||++++|++|++++.|
T Consensus 141 G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~G~i~~~~ 219 (237)
T PRK11614 141 GEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQ-ALKLADRGYVLENGHVVLED 219 (237)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHH-HHhhCCEEEEEeCCEEEeeC
Confidence 99999999999999999999999999999999999999999998889999999999874 78899999999999999999
Q ss_pred Cccchh
Q 003437 282 SPVALP 287 (820)
Q Consensus 282 ~~~~~~ 287 (820)
+++++.
T Consensus 220 ~~~~~~ 225 (237)
T PRK11614 220 TGDALL 225 (237)
T ss_pred CHHHHh
Confidence 987764
No 96
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=6.9e-42 Score=357.49 Aligned_cols=222 Identities=42% Similarity=0.684 Sum_probs=186.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCceEEEECCEeC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ-GSLEGSVRIDGKPV 125 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~-~~~~G~I~i~G~~~ 125 (820)
.+.++||++.|++.. ..+.+|+|+|+++++||+++|+||||||||||+|+|+|++++ .+++|+|.++|+++
T Consensus 3 ~~~~~~~~~~~~~~~--------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 3 VLPWWDVGLKAKNWN--------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred cceeecceeeeecCc--------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 378999999986421 124699999999999999999999999999999999998751 14689999999988
Q ss_pred CCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHHHcCCCccccccccCCCCCCCChHHH
Q 003437 126 TTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYE-LLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
.....++.++|++|++.+++.+||+||+.+......+.........+++++ +++.+++.+..++.++ .||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVK-----GISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccccc-----CcCHHHH
Confidence 654456779999999999999999999998765432211222233345555 8999999877666654 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|||+||++|+.+|++|||||||+|||+.++..+.+.|+++.++|.|+|+++|++..++.++||++++|++|++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999999998779999999999854588899999999999999865
No 97
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-42 Score=370.16 Aligned_cols=222 Identities=28% Similarity=0.439 Sum_probs=189.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|++... ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++.
T Consensus 2 ~i~~~~l~~~~~~~~~-------~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13641 2 SIKFENVDYIYSPGTP-------MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHIT 72 (287)
T ss_pred EEEEEEEEEEcCCCCC-------ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 4899999999963210 01359999999999999999999999999999999999885 46899999999874
Q ss_pred C-------ccccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 003437 127 T-------SYMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGR 196 (820)
Q Consensus 127 ~-------~~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~ 196 (820)
. ...++.++|++|++ .++ .+||.||+.+..... ...+++..++++++++.+||+ +..++.++
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~---- 144 (287)
T PRK13641 73 PETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSPF---- 144 (287)
T ss_pred cccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCcc----
Confidence 2 12345789999997 355 579999998875432 234556667899999999997 56677665
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +.++||++++|++|+
T Consensus 145 -~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~-~~~~~d~v~~l~~G~ 222 (287)
T PRK13641 145 -ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDD-VAEYADDVLVLEHGK 222 (287)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEECCE
Confidence 699999999999999999999999999999999999999999999998789999999999984 788999999999999
Q ss_pred EEEEcCccchh
Q 003437 277 LVYMGSPVALP 287 (820)
Q Consensus 277 iv~~G~~~~~~ 287 (820)
+++.|+++++.
T Consensus 223 i~~~g~~~~~~ 233 (287)
T PRK13641 223 LIKHASPKEIF 233 (287)
T ss_pred EEEeCCHHHHh
Confidence 99999987764
No 98
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-42 Score=355.24 Aligned_cols=209 Identities=32% Similarity=0.533 Sum_probs=182.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|++++|.+ +.+|+|+||++++| +++|+||||||||||+++|+|+++ +++|+|.++|+++..
T Consensus 1 i~~~~~~~~~~~------------~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 65 (211)
T cd03264 1 LQLENLTKRYGK------------KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLK 65 (211)
T ss_pred CEEEEEEEEECC------------EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCcccc
Confidence 578999999853 24999999999999 999999999999999999999885 468999999988753
Q ss_pred c--cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 128 S--YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 128 ~--~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
. ..++.++|++|++.+++.+||.||+.+....+ ..++++..++++++++.+||.+..++.++ .|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 137 (211)
T cd03264 66 QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKIG-----SLSGGMRR 137 (211)
T ss_pred chHHHHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCchh-----hCCHHHHH
Confidence 2 23567899999999999999999999876543 13344456678999999999887777664 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|+++. +.+++|++++|++|++++.|
T Consensus 138 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~-~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 138 RVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVED-VESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHH-HHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999986 5999999999974 77889999999999998764
No 99
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-42 Score=374.55 Aligned_cols=231 Identities=23% Similarity=0.326 Sum_probs=194.0
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.|..+....+ ......+|+||||+|++||+++|+|+||||||||+++|+|++. +.+|+|.++|+++
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~--~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l 79 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFK--PERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDL 79 (327)
T ss_pred ceEEEeeeEEEEcCCCCccc--cCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEc
Confidence 35999999999964211000 0012469999999999999999999999999999999999985 4689999999998
Q ss_pred CCc------cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 003437 126 TTS------YMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGR 196 (820)
Q Consensus 126 ~~~------~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~ 196 (820)
... ..++.++||+|++ .+.|.+||.+++.+...... ...+++..+++.++++.+||.+ ..++++
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~p----- 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRYP----- 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCCC-----
Confidence 542 2356799999998 58999999999987655431 2455666788999999999963 455554
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
++|||||||||+||+||+.+|++||+||||++||..++.+|+++|+++.++ |.|+|++|||++. +.++||+|++|++|
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~-~~~~adrv~vm~~G 231 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSV-VEHIADEVMVMYLG 231 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999999874 9999999999984 77899999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+++++..
T Consensus 232 ~ive~g~~~~~~~ 244 (327)
T PRK11308 232 RCVEKGTKEQIFN 244 (327)
T ss_pred EEEEECCHHHHhc
Confidence 9999999887754
No 100
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-41 Score=362.03 Aligned_cols=212 Identities=29% Similarity=0.465 Sum_probs=184.9
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||++.|++ +.+|+|+|++|++||+++|+|||||||||||++|+|+++ +++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 67 (255)
T PRK11248 2 LQISHLYADYGG------------KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEG 67 (255)
T ss_pred EEEEEEEEEeCC------------eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCC
Confidence 789999999853 249999999999999999999999999999999999885 468999999998753
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 003437 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRV 207 (820)
Q Consensus 128 ~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv 207 (820)
....++|++|++.+++.+||.||+.+....+ .....+..+++.++++.+||.+..++.+. .|||||||||
T Consensus 68 --~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrl 137 (255)
T PRK11248 68 --PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIW-----QLSGGQRQRV 137 (255)
T ss_pred --CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCChh-----hCCHHHHHHH
Confidence 2345799999999999999999998875432 23445556788999999999877776654 6999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEe--CCeEEEEcCcc
Q 003437 208 SIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLA--RGRLVYMGSPV 284 (820)
Q Consensus 208 ~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~--~G~iv~~G~~~ 284 (820)
+||++|+.+|++|||||||+|||+.++..+.+.|+++++ +|.|||++||+++. +..+||++++|+ +|+++..++.+
T Consensus 138 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~-~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 138 GIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEE-AVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEeCCCcEEEEEecCC
Confidence 999999999999999999999999999999999999965 58999999999984 788999999998 59999887653
No 101
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=9e-42 Score=355.63 Aligned_cols=209 Identities=28% Similarity=0.465 Sum_probs=182.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|.. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++ +++|+|.++|.++..
T Consensus 2 l~~~~l~~~~~~-----------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 68 (222)
T PRK10908 2 IRFEHVSKAYLG-----------GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDITR 68 (222)
T ss_pred EEEEeeEEEecC-----------CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 789999999832 1249999999999999999999999999999999999885 468999999998753
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 128 S------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 128 ~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
. ..++.++|++|++.+++.+||+||+.+....+ ..+.++..+++.++++.+||.+..++.+. .|||
T Consensus 69 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 140 (222)
T PRK10908 69 LKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFPI-----QLSG 140 (222)
T ss_pred CChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCch-----hCCH
Confidence 1 13567899999998888899999999875443 23444555678899999999887776654 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +..+||++++|++|+++
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 141 GEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGL-ISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEECCEEc
Confidence 99999999999999999999999999999999999999999998779999999999985 77889999999999985
No 102
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-42 Score=369.10 Aligned_cols=220 Identities=27% Similarity=0.473 Sum_probs=189.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|+.+ +.+|+|+|++|++||+++|+||||||||||+++|+|+++ +.+|+|.++|+++.
T Consensus 5 ~l~~~~l~~~~~~~-----------~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~~ 71 (283)
T PRK13636 5 ILKVEELNYNYSDG-----------THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPID 71 (283)
T ss_pred eEEEEeEEEEeCCC-----------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEECC
Confidence 59999999999521 349999999999999999999999999999999999885 46899999999874
Q ss_pred C-----ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 003437 127 T-----SYMKMVSSYVMQDDQ-LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS 200 (820)
Q Consensus 127 ~-----~~~~~~~gyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS 200 (820)
. ...++.+||++|++. .+...||+||+.+..... +.+.++..++++++++.+||.+..++.+. .||
T Consensus 72 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS 143 (283)
T PRK13636 72 YSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPTH-----CLS 143 (283)
T ss_pred CCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCcc-----cCC
Confidence 1 124567899999973 233469999998865432 23555666789999999999887777664 699
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
||||||++||++|+.+|++|||||||+|||+.++..+.++|++++++ |+|||+++|+++. +..+||++++|++|++++
T Consensus 144 ~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~-~~~~~dri~~l~~G~i~~ 222 (283)
T PRK13636 144 FGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDI-VPLYCDNVFVMKEGRVIL 222 (283)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999875 9999999999985 777899999999999999
Q ss_pred EcCccchhh
Q 003437 280 MGSPVALPA 288 (820)
Q Consensus 280 ~G~~~~~~~ 288 (820)
.|+++++..
T Consensus 223 ~g~~~~~~~ 231 (283)
T PRK13636 223 QGNPKEVFA 231 (283)
T ss_pred eCCHHHHhc
Confidence 999887654
No 103
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-42 Score=360.68 Aligned_cols=217 Identities=26% Similarity=0.449 Sum_probs=187.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~------------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (242)
T PRK11124 2 SIQLNGINCFYGA------------HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFD 67 (242)
T ss_pred EEEEEeeEEEECC------------eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecc
Confidence 4899999999953 249999999999999999999999999999999999875 46899999999863
Q ss_pred C---------ccccceEEEEccCCCCCCCCCHHHHHHHH-HHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 003437 127 T---------SYMKMVSSYVMQDDQLFPMLTVFETFMFA-AEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGR 196 (820)
Q Consensus 127 ~---------~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~-~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~ 196 (820)
. ...++.++|++|++.+++.+||.||+.+. .... +....+..+++.++++.+||++..++.+.
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---- 140 (242)
T PRK11124 68 FSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFPL---- 140 (242)
T ss_pred cccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChh----
Confidence 1 12345789999999999999999999753 2221 12344456678999999999887777664
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++.. +.++||++++|++|+
T Consensus 141 -~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~-~~~~~d~i~~l~~g~ 218 (242)
T PRK11124 141 -HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEV-ARKTASRVVYMENGH 218 (242)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCEEEEEECCE
Confidence 699999999999999999999999999999999999999999999998779999999999984 778899999999999
Q ss_pred EEEEcCccch
Q 003437 277 LVYMGSPVAL 286 (820)
Q Consensus 277 iv~~G~~~~~ 286 (820)
+++.|+++++
T Consensus 219 i~~~~~~~~~ 228 (242)
T PRK11124 219 IVEQGDASCF 228 (242)
T ss_pred EEEeCCHHHh
Confidence 9999987653
No 104
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-41 Score=363.27 Aligned_cols=218 Identities=22% Similarity=0.387 Sum_probs=186.1
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G~ 123 (820)
.|+++||++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|++++. +++|+|.++|+
T Consensus 12 ~l~~~~l~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~ 79 (258)
T PRK14268 12 QIKVENLNLWYGE------------KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGE 79 (258)
T ss_pred eEEEeeeEEEeCC------------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCE
Confidence 5999999999853 24999999999999999999999999999999999998542 36899999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR----SATHTYIGNE 194 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~ 194 (820)
++.. ...++.++|++|++.+++ +||+||+.+....+ ..+.++..+++.++++.+|+. +..++.+
T Consensus 80 ~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--- 152 (258)
T PRK14268 80 DIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPA--- 152 (258)
T ss_pred EcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCCh---
Confidence 8742 123567899999998888 89999999875432 234444556788999999984 3344444
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++.. +.++||++++|++
T Consensus 153 --~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~-~~~~~d~i~~l~~ 228 (258)
T PRK14268 153 --LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQ-AARISDYTGFFLM 228 (258)
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHH-HHHhCCEEEEEEC
Confidence 47999999999999999999999999999999999999999999999965 7999999999974 7789999999999
Q ss_pred CeEEEEcCccchh
Q 003437 275 GRLVYMGSPVALP 287 (820)
Q Consensus 275 G~iv~~G~~~~~~ 287 (820)
|++++.|+++++.
T Consensus 229 G~i~~~~~~~~~~ 241 (258)
T PRK14268 229 GELIEFGQTRQIF 241 (258)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999887663
No 105
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-42 Score=375.70 Aligned_cols=230 Identities=23% Similarity=0.296 Sum_probs=188.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CCCceEEEECCEe
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ--GSLEGSVRIDGKP 124 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~--~~~~G~I~i~G~~ 124 (820)
.|+++||++.|..+. ....+|+||||+|++||+++|+|+||||||||+++|+|++++ .+++|+|.++|++
T Consensus 3 ~L~v~~l~~~y~~~~--------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~ 74 (330)
T PRK15093 3 LLDIRNLTIEFKTSD--------GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID 74 (330)
T ss_pred eEEEeeeEEEEeCCC--------CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE
Confidence 489999999995321 124599999999999999999999999999999999999853 2468999999998
Q ss_pred CCCcc-------ccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHHHcCCCcccccccc
Q 003437 125 VTTSY-------MKMVSSYVMQDDQ--LFPMLTVFETFMFAAEVRLPPS---ISRDEKKKRVYELLDQLGLRSATHTYIG 192 (820)
Q Consensus 125 ~~~~~-------~~~~~gyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~ig 192 (820)
+.... .++.++||+|++. +.|.+||.+++.+......... ....+..+++.++|+.+||.+..+. -
T Consensus 75 i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~--~ 152 (330)
T PRK15093 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDA--M 152 (330)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHH--H
Confidence 75321 1346899999975 6888999999986533211000 1123445688999999999753211 1
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEE
Q 003437 193 NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIV 271 (820)
Q Consensus 193 ~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~l 271 (820)
+..+.+|||||||||+||+||+.+|++|||||||+|||+.++.+++++|+++.++ |.|||++|||++. +.++||+|++
T Consensus 153 ~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~-v~~~~dri~v 231 (330)
T PRK15093 153 RSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQM-LSQWADKINV 231 (330)
T ss_pred hCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHHhCCEEEE
Confidence 2334589999999999999999999999999999999999999999999999874 9999999999985 7889999999
Q ss_pred EeCCeEEEEcCccchh
Q 003437 272 LARGRLVYMGSPVALP 287 (820)
Q Consensus 272 L~~G~iv~~G~~~~~~ 287 (820)
|++|+|++.|+++++.
T Consensus 232 m~~G~ive~g~~~~i~ 247 (330)
T PRK15093 232 LYCGQTVETAPSKELV 247 (330)
T ss_pred EECCEEEEECCHHHHH
Confidence 9999999999987764
No 106
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=9.5e-42 Score=355.00 Aligned_cols=211 Identities=30% Similarity=0.498 Sum_probs=179.7
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|+++. ..+.+|+++|+++++||+++|+|||||||||||++|+|+++ +.+|+|.++|+++..
T Consensus 2 l~~~~v~~~~~~~~--------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 71 (221)
T TIGR02211 2 LKCENLGKRYQEGK--------LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLSK 71 (221)
T ss_pred EEEEeeeEEccCCC--------cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhh
Confidence 78999999995321 11359999999999999999999999999999999999875 468999999998753
Q ss_pred cc------cc-ceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 003437 128 SY------MK-MVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS 200 (820)
Q Consensus 128 ~~------~~-~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS 200 (820)
.. .+ +.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||++..++.++ .||
T Consensus 72 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 143 (221)
T TIGR02211 72 LSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRPS-----ELS 143 (221)
T ss_pred cCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCC
Confidence 21 12 56899999999999999999999865432 12334445678899999999887777664 699
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++. +. .+|++++|++|+++
T Consensus 144 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~-~~-~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 144 GGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL-AK-KLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-Hh-hcCEEEEEeCCEec
Confidence 99999999999999999999999999999999999999999999864 8999999999974 54 48999999999975
No 107
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=361.63 Aligned_cols=221 Identities=24% Similarity=0.405 Sum_probs=187.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G~ 123 (820)
.|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|++++. +++|+|.++|+
T Consensus 4 ~l~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~ 71 (253)
T PRK14267 4 AIETVNLRVYYGS------------NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGR 71 (253)
T ss_pred eEEEEeEEEEeCC------------eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCE
Confidence 4899999999953 24999999999999999999999999999999999998653 35899999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS----ATHTYIGNE 194 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~ig~~ 194 (820)
++.. ...++.++|++|++.+++.+||.||+.+....+. ...+.++..+++.++++.+||.+ ..++.
T Consensus 72 ~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 146 (253)
T PRK14267 72 NIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKDRLNDY---- 146 (253)
T ss_pred EccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhhhhccC----
Confidence 8751 1235678999999999999999999998754321 01134445567889999999853 23333
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++. +..+||++++|++
T Consensus 147 -~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~~~~~d~i~~l~~ 223 (253)
T PRK14267 147 -PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQ-AARVSDYVAFLYL 223 (253)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHH-HHhhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999975 6999999999974 7889999999999
Q ss_pred CeEEEEcCccchh
Q 003437 275 GRLVYMGSPVALP 287 (820)
Q Consensus 275 G~iv~~G~~~~~~ 287 (820)
|++++.|+++++.
T Consensus 224 G~i~~~~~~~~~~ 236 (253)
T PRK14267 224 GKLIEVGPTRKVF 236 (253)
T ss_pred CEEEEeCCHHHHH
Confidence 9999999987664
No 108
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=360.81 Aligned_cols=221 Identities=24% Similarity=0.375 Sum_probs=187.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G~ 123 (820)
.|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|++.+. +++|+|.++|.
T Consensus 3 ~l~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14247 3 KIEIRDLKVSFGQ------------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQ 70 (250)
T ss_pred eEEEEeeEEEECC------------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCE
Confidence 4899999999853 24999999999999999999999999999999999998542 46899999999
Q ss_pred eCCC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCCCC
Q 003437 124 PVTT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS----ATHTYIGNEGR 196 (820)
Q Consensus 124 ~~~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~ig~~~~ 196 (820)
++.. ...++.++|++|++.+++.+||.||+.+....+.. ....++..+++.++++.+||.+ ..++.+
T Consensus 71 ~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~----- 144 (250)
T PRK14247 71 DIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAPA----- 144 (250)
T ss_pred ECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCCc-----
Confidence 8753 23456789999999888899999999987543211 1133455677899999999964 234443
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
.+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ |+|+|+++|+++. +.++||++++|++|+
T Consensus 145 ~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~~~~~d~i~~l~~G~ 222 (250)
T PRK14247 145 GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQ-AARISDYVAFLYKGQ 222 (250)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HHHhcCEEEEEECCe
Confidence 57999999999999999999999999999999999999999999999965 8999999999974 778899999999999
Q ss_pred EEEEcCccchh
Q 003437 277 LVYMGSPVALP 287 (820)
Q Consensus 277 iv~~G~~~~~~ 287 (820)
+++.|+++++.
T Consensus 223 i~~~g~~~~~~ 233 (250)
T PRK14247 223 IVEWGPTREVF 233 (250)
T ss_pred EEEECCHHHHH
Confidence 99999987764
No 109
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-41 Score=362.04 Aligned_cols=221 Identities=24% Similarity=0.428 Sum_probs=187.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|++ +.+|+++|+++++||+++|+||||||||||+++|+|+.+ +++|+|.++|.++.
T Consensus 5 ~l~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 70 (255)
T PRK11300 5 LLSVSGLMMRFGG------------LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHIE 70 (255)
T ss_pred eEEEeeEEEEECC------------EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEECC
Confidence 5999999999853 249999999999999999999999999999999999875 46899999999875
Q ss_pred Ccc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC----------CCC--CHHHHHHHHHHHHHHcCCCcccccc
Q 003437 127 TSY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP----------PSI--SRDEKKKRVYELLDQLGLRSATHTY 190 (820)
Q Consensus 127 ~~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~----------~~~--~~~~~~~~v~~~l~~lgL~~~~~~~ 190 (820)
... .+..++|++|++.+++.+||+||+.++...... ... ...+..+++.++++.+||.+..++.
T Consensus 71 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 150 (255)
T PRK11300 71 GLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ 150 (255)
T ss_pred CCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC
Confidence 321 234578999999999999999999986431100 000 1123345788899999998877777
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEE
Q 003437 191 IGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRI 269 (820)
Q Consensus 191 ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v 269 (820)
++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.++||++
T Consensus 151 ~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~-~~~~~d~i 224 (255)
T PRK11300 151 AG-----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKL-VMGISDRI 224 (255)
T ss_pred hh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-HHHhCCEE
Confidence 65 69999999999999999999999999999999999999999999999875 8999999999984 77899999
Q ss_pred EEEeCCeEEEEcCccchh
Q 003437 270 IVLARGRLVYMGSPVALP 287 (820)
Q Consensus 270 ~lL~~G~iv~~G~~~~~~ 287 (820)
++|++|++++.|+++++.
T Consensus 225 ~~l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 225 YVVNQGTPLANGTPEEIR 242 (255)
T ss_pred EEEECCeEEecCCHHHHh
Confidence 999999999999887653
No 110
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-41 Score=367.01 Aligned_cols=220 Identities=28% Similarity=0.427 Sum_probs=190.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|... .+.+|+|+|++|++||+++|+||||||||||+++|+|+++ +.+|+|.++|+++.
T Consensus 5 ~l~~~~l~~~~~~~----------~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i~ 72 (279)
T PRK13635 5 IIRVEHISFRYPDA----------ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVLS 72 (279)
T ss_pred eEEEEEEEEEeCCC----------CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECC
Confidence 59999999999531 2359999999999999999999999999999999999985 46899999999886
Q ss_pred Cc---cccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 TS---YMKMVSSYVMQDDQ-LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
.. ..++.++|++|++. +++..||.||+.+..... ..+.++..+++.++++.+||.+..++.++ .||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~G 144 (279)
T PRK13635 73 EETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREPH-----RLSGG 144 (279)
T ss_pred cCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCcc-----cCCHH
Confidence 42 23567899999973 666789999999875432 23455666789999999999988777765 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|||||+||++|+.+|++|||||||+|||+.++..++++|++++++ |+|||++||+++. +. .||++++|++|++++.|
T Consensus 145 ~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d~i~~l~~G~i~~~g 222 (279)
T PRK13635 145 QKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QADRVIVMNKGEILEEG 222 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999875 8999999999985 55 59999999999999999
Q ss_pred Cccchhh
Q 003437 282 SPVALPA 288 (820)
Q Consensus 282 ~~~~~~~ 288 (820)
+++++..
T Consensus 223 ~~~~~~~ 229 (279)
T PRK13635 223 TPEEIFK 229 (279)
T ss_pred CHHHHhc
Confidence 9877643
No 111
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=7e-42 Score=353.89 Aligned_cols=208 Identities=33% Similarity=0.539 Sum_probs=180.5
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+++||++++||+++|+||||||||||+|+|+|+++ +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (213)
T cd03262 1 IEIKNLHKSFGD------------FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTD 66 (213)
T ss_pred CEEEEEEEEECC------------eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCc
Confidence 478999999853 249999999999999999999999999999999999885 468999999998742
Q ss_pred -----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 128 -----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 128 -----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
...++.++|++|++.+++.+||+||+.+...... ....++..+++.++++.+||++..++.+. .||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYPA-----QLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCcc-----ccCHH
Confidence 1235678999999999999999999988643211 23344556778999999999887777664 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.++||++++|++|++
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~-~~~~~d~i~~l~~g~i 213 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGF-AREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999999999999998889999999999974 7889999999999974
No 112
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=361.77 Aligned_cols=219 Identities=23% Similarity=0.357 Sum_probs=185.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G~ 123 (820)
.|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|++++. +++|+|.++|+
T Consensus 7 ~l~~~~l~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 74 (254)
T PRK14273 7 IIETENLNLFYTD------------FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGK 74 (254)
T ss_pred eEEEeeeEEEeCC------------ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCE
Confidence 5999999999853 24999999999999999999999999999999999998643 35899999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR----SATHTYIGNE 194 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~ 194 (820)
++.. ...++.++|++|++.+++ +||+||+.+...... .....+..+++.++++.+++. +..++.+
T Consensus 75 ~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--- 148 (254)
T PRK14273 75 NIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNA--- 148 (254)
T ss_pred ecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCc---
Confidence 8742 124567899999988885 899999998754321 123344567788999999984 3345544
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
+.|||||||||+|||+|+.+|++|||||||+|||+.++..++++|+++++ +.|||+++|+++. +.++||++++|++
T Consensus 149 --~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~~-~~~~~d~i~~l~~ 224 (254)
T PRK14273 149 --LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQQ-AGRISDRTAFFLN 224 (254)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HHHhCCEEEEEEC
Confidence 57999999999999999999999999999999999999999999999964 7999999999984 7789999999999
Q ss_pred CeEEEEcCccchh
Q 003437 275 GRLVYMGSPVALP 287 (820)
Q Consensus 275 G~iv~~G~~~~~~ 287 (820)
|+++..|+++++.
T Consensus 225 G~i~~~g~~~~~~ 237 (254)
T PRK14273 225 GCIEEESSTDELF 237 (254)
T ss_pred CEEEEeCCHHHHH
Confidence 9999999987764
No 113
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.5e-41 Score=358.57 Aligned_cols=220 Identities=29% Similarity=0.434 Sum_probs=187.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|++ +.+|+|+||++++||+++|+|||||||||||++|+|+++ +.+|+|.++|.++.
T Consensus 2 ~i~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 67 (242)
T TIGR03411 2 ILYLEGLSVSFDG------------FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLT 67 (242)
T ss_pred eEEEEeeEEEcCC------------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecC
Confidence 4899999999853 249999999999999999999999999999999999875 46899999999875
Q ss_pred Ccc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC--C---CCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 003437 127 TSY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP--P---SISRDEKKKRVYELLDQLGLRSATHTYIGNEGRR 197 (820)
Q Consensus 127 ~~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~ 197 (820)
... .++.++|++|++.+++.+||+||+.+....... . ....++..++++++++.+|+.+..++.++
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAG----- 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChh-----
Confidence 321 234689999999999999999999886432100 0 01223445678999999999887777665
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++. +.++||++++|++|++
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~-~~~~~d~i~~l~~g~~ 220 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEF-VRSIADKVTVLHQGSV 220 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHH-HHHhCCEEEEEECCeE
Confidence 6999999999999999999999999999999999999999999999976 7899999999984 7889999999999999
Q ss_pred EEEcCccchh
Q 003437 278 VYMGSPVALP 287 (820)
Q Consensus 278 v~~G~~~~~~ 287 (820)
++.|+++++.
T Consensus 221 ~~~~~~~~~~ 230 (242)
T TIGR03411 221 LAEGSLDQVQ 230 (242)
T ss_pred EeeCCHHHHh
Confidence 9999877653
No 114
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.4e-41 Score=360.92 Aligned_cols=218 Identities=28% Similarity=0.449 Sum_probs=187.9
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||++.|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|++. +++|+|.++|+++..
T Consensus 1 i~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 66 (252)
T TIGR03005 1 VRFSDVTKRFGI------------LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYH 66 (252)
T ss_pred CEEEEEEEEeCC------------eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 578999999853 249999999999999999999999999999999999885 468999999998742
Q ss_pred c----------------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 003437 128 S----------------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYI 191 (820)
Q Consensus 128 ~----------------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~i 191 (820)
. ..++.++|++|++.+++..||.||+.++.... ......+..+++.++++.+|+.+..++.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 144 (252)
T TIGR03005 67 MPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHMP 144 (252)
T ss_pred cccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcCh
Confidence 1 23567899999999999999999998864321 12344455667899999999987776665
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEE
Q 003437 192 GNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRII 270 (820)
Q Consensus 192 g~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 270 (820)
+.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|++||++.. +..+||+++
T Consensus 145 -----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~-~~~~~d~i~ 218 (252)
T TIGR03005 145 -----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGF-AREFADRVC 218 (252)
T ss_pred -----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH-HHHhcCEEE
Confidence 469999999999999999999999999999999999999999999999875 9999999999974 778899999
Q ss_pred EEeCCeEEEEcCccchh
Q 003437 271 VLARGRLVYMGSPVALP 287 (820)
Q Consensus 271 lL~~G~iv~~G~~~~~~ 287 (820)
+|++|++++.|+++++.
T Consensus 219 ~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 219 FFDKGRIVEQGKPDEIF 235 (252)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999877653
No 115
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-41 Score=380.63 Aligned_cols=230 Identities=28% Similarity=0.430 Sum_probs=195.0
Q ss_pred eEEEEEEEEEECcccccc------c-----c-cccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCC
Q 003437 47 GLEFKNLSYSIMKKQKKD------G-----V-WITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSL 114 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~------~-----~-~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~ 114 (820)
.|+++||++.|+....+. + . ...+...+|+|+||+|++||+++|+||||||||||||+|+|+++ ++
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~ 81 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PT 81 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CC
Confidence 499999999997642100 0 0 01122348999999999999999999999999999999999985 46
Q ss_pred ceEEEECCEeCCCcc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 003437 115 EGSVRIDGKPVTTSY-------MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT 187 (820)
Q Consensus 115 ~G~I~i~G~~~~~~~-------~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 187 (820)
+|+|+++|+++.... .++.++||+|++.+++.+||+||+.+....+ ..+.++..+++.++++.+||.+..
T Consensus 82 sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~ 158 (400)
T PRK10070 82 RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYA 158 (400)
T ss_pred CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhh
Confidence 899999999975321 1356899999999999999999999987643 234555667899999999998877
Q ss_pred cccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhc
Q 003437 188 HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLL 266 (820)
Q Consensus 188 ~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~ 266 (820)
++++. .|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||+++. +.++|
T Consensus 159 ~~~~~-----~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~-~~~~~ 232 (400)
T PRK10070 159 HSYPD-----ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDE-AMRIG 232 (400)
T ss_pred hcCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHH-HHHhC
Confidence 77664 6999999999999999999999999999999999999999999999976 58999999999974 78899
Q ss_pred CEEEEEeCCeEEEEcCccchh
Q 003437 267 DRIIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 267 D~v~lL~~G~iv~~G~~~~~~ 287 (820)
|++++|++|+++..|+++++.
T Consensus 233 Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 233 DRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CEEEEEECCEEEecCCHHHHH
Confidence 999999999999999987764
No 116
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-41 Score=365.41 Aligned_cols=217 Identities=24% Similarity=0.390 Sum_probs=186.5
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+|+|++|++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~------------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~ 67 (271)
T PRK13638 2 LATSDLWFRYQD------------EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLDY 67 (271)
T ss_pred eEEEEEEEEcCC------------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEccc
Confidence 889999999853 249999999999999999999999999999999999885 468999999998741
Q ss_pred c-----cccceEEEEccCCCC-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 128 S-----YMKMVSSYVMQDDQL-FPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 128 ~-----~~~~~~gyv~Q~~~l-~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
. ..++.++||+|++.+ +...|+.||+.+..... +...++..++++++++.+||.+..++.++ .|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 139 (271)
T PRK13638 68 SKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPIQ-----CLSH 139 (271)
T ss_pred ccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCch-----hCCH
Confidence 1 234578999999752 34458999998865432 23444556678899999999887777654 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|||||++||++|+.+|++|||||||+|||+.++..+.++|++++++|.|||+++|+++. +..+||++++|++|++++.|
T Consensus 140 G~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~-~~~~~d~i~~l~~G~i~~~g 218 (271)
T PRK13638 140 GQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDL-IYEISDAVYVLRQGQILTHG 218 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999998779999999999974 77899999999999999999
Q ss_pred Cccchh
Q 003437 282 SPVALP 287 (820)
Q Consensus 282 ~~~~~~ 287 (820)
+++++.
T Consensus 219 ~~~~~~ 224 (271)
T PRK13638 219 APGEVF 224 (271)
T ss_pred CHHHHh
Confidence 887654
No 117
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.5e-41 Score=355.07 Aligned_cols=216 Identities=32% Similarity=0.464 Sum_probs=178.9
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|.++. ....+|+|+|+++++||+++|+|||||||||||++|+|+++ +.+|+|.++|+++..
T Consensus 2 l~~~~v~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 71 (228)
T cd03257 2 LEVKNLSVSFPTGG--------GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLLK 71 (228)
T ss_pred eEEEeeeEeccCCC--------cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccc
Confidence 78999999985321 01259999999999999999999999999999999999875 468999999998753
Q ss_pred c------cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHH-HHHHHHHcCCC-ccccccccCCCCC
Q 003437 128 S------YMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKR-VYELLDQLGLR-SATHTYIGNEGRR 197 (820)
Q Consensus 128 ~------~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~ig~~~~~ 197 (820)
. ..++.++|++|++ .+++.+||+||+.+....... ....+..+. +.++++.++|. +..++.++
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----- 144 (228)
T cd03257 72 LSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK--LSKKEARKEAVLLLLVGVGLPEEVLNRYPH----- 144 (228)
T ss_pred cchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHHHHCCCChhHhhCCch-----
Confidence 1 2356789999998 467789999999887544311 112222222 36889999995 45666554
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +..+||++++|++|+
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~~~~d~i~~l~~G~ 223 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGV-VAKIADRVAVMYAGK 223 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCeEEEEeCCE
Confidence 69999999999999999999999999999999999999999999999875 8999999999974 777899999999999
Q ss_pred EEEEc
Q 003437 277 LVYMG 281 (820)
Q Consensus 277 iv~~G 281 (820)
++..|
T Consensus 224 i~~~g 228 (228)
T cd03257 224 IVEEG 228 (228)
T ss_pred EEecC
Confidence 98754
No 118
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-41 Score=362.24 Aligned_cols=218 Identities=33% Similarity=0.470 Sum_probs=187.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++ +++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~------------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~ 67 (258)
T PRK13548 2 MLEARNLSVRLGG------------RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLA 67 (258)
T ss_pred eEEEEeEEEEeCC------------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcc
Confidence 4899999999953 249999999999999999999999999999999999875 46899999999875
Q ss_pred Cc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 127 TS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
.. ..++.++|++|++.+++.+||+||+.+..... ....++..++++++++.+||.+..++.++ .|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDYP-----QLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCcc-----cCCHHH
Confidence 31 23456899999998888899999998864321 11223345678899999999887777765 699999
Q ss_pred HHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 204 RRRVSIGIDII------HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA-RTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 204 rqRv~ia~aL~------~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
||||+||++|+ .+|++|||||||+|||+.++..+.+.|++++ ++|+|||++||++.. +..+||++++|++|+
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~G~ 218 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNL-AARYADRIVLLHQGR 218 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHHhcCEEEEEECCE
Confidence 99999999999 5999999999999999999999999999998 579999999999974 778999999999999
Q ss_pred EEEEcCccchh
Q 003437 277 LVYMGSPVALP 287 (820)
Q Consensus 277 iv~~G~~~~~~ 287 (820)
+++.|+++++.
T Consensus 219 i~~~~~~~~~~ 229 (258)
T PRK13548 219 LVADGTPAEVL 229 (258)
T ss_pred EEeeCCHHHHh
Confidence 99999876653
No 119
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-41 Score=365.33 Aligned_cols=217 Identities=29% Similarity=0.422 Sum_probs=188.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++. +.+|+|+||+|++||+++|+||||||||||+|+|+|+++ +++|+|.++|.++..
T Consensus 2 l~~~~l~~~~~~~-----------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 68 (274)
T PRK13644 2 IRLENVSYSYPDG-----------TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTGD 68 (274)
T ss_pred EEEEEEEEEcCCC-----------CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECCc
Confidence 7899999998521 249999999999999999999999999999999999875 468999999998753
Q ss_pred ----ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 128 ----SYMKMVSSYVMQDDQ-LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 128 ----~~~~~~~gyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
...++.++|++|++. .+...||.||+.+..... ..+..+..++++++++.+||++..++.++ .||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G 140 (274)
T PRK13644 69 FSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSPK-----TLSGG 140 (274)
T ss_pred cccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCcc-----cCCHH
Confidence 123567899999975 355679999998875432 23555666789999999999887777664 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. + ..||++++|++|++++.|+
T Consensus 141 ~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~-~-~~~d~v~~l~~G~i~~~g~ 218 (274)
T PRK13644 141 QGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE-L-HDADRIIVMDRGKIVLEGE 218 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-hhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999998789999999999985 5 4699999999999999999
Q ss_pred ccchh
Q 003437 283 PVALP 287 (820)
Q Consensus 283 ~~~~~ 287 (820)
++++.
T Consensus 219 ~~~~~ 223 (274)
T PRK13644 219 PENVL 223 (274)
T ss_pred HHHHh
Confidence 87764
No 120
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-41 Score=359.26 Aligned_cols=225 Identities=25% Similarity=0.401 Sum_probs=185.9
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--C-CCCceEEEEC
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIA--Q-GSLEGSVRID 121 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~--~-~~~~G~I~i~ 121 (820)
++.|+++||+++|++ +.+|+|+|++|++||+++|+||||||||||||+|+|+.. + .+++|+|.++
T Consensus 4 ~~~l~~~~l~~~~~~------------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 71 (253)
T PRK14242 4 PPKMEARGLSFFYGD------------FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLD 71 (253)
T ss_pred CcEEEEeeeEEEECC------------eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEEC
Confidence 345999999999953 249999999999999999999999999999999999863 1 2468999999
Q ss_pred CEeCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 003437 122 GKPVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGR 196 (820)
Q Consensus 122 G~~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~ 196 (820)
|+++.. ...++.++|++|++.+++. ||+||+.+....+. ....++..++++++++.+||.+...... +..+
T Consensus 72 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~ 147 (253)
T PRK14242 72 GENIYDPHVDVVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRL-HESA 147 (253)
T ss_pred CEEccccccCHHHHhhcEEEEecCCCCCcC-cHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCc
Confidence 998753 1235678999999988884 99999998754331 1123344567889999999854221111 2234
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
+.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++. +.++||++++|++|+
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~~-~~~~~d~v~~l~~G~ 225 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQQ-AARVSDVTAFFYMGK 225 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHHH-HHHhCCEEEEEECCE
Confidence 57999999999999999999999999999999999999999999999954 7999999999974 778999999999999
Q ss_pred EEEEcCccchh
Q 003437 277 LVYMGSPVALP 287 (820)
Q Consensus 277 iv~~G~~~~~~ 287 (820)
++..|+++++.
T Consensus 226 i~~~g~~~~~~ 236 (253)
T PRK14242 226 LIEVGPTEQIF 236 (253)
T ss_pred EEEeCCHHHHH
Confidence 99999877653
No 121
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-41 Score=364.65 Aligned_cols=219 Identities=31% Similarity=0.460 Sum_probs=189.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++. +.+|+|+||+|++||+++|+|+||||||||+|+|+|+++ +++|+|.++|+++.
T Consensus 3 ~l~~~~l~~~~~~~-----------~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 3 LIETRDLCYSYSGS-----------KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred eEEEEEEEEEeCCC-----------CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 48999999999531 249999999999999999999999999999999999875 46899999999875
Q ss_pred C---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 T---SYMKMVSSYVMQDDQ-LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
. ...++.++||+|++. .+...||.||+.+..... ..+.++..++++++++.+||.+..++.+. .||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVPH-----HLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCcc-----cCCHH
Confidence 3 124466899999973 233579999998765432 24455566788999999999887777764 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++. +.++||++++|++|++++.|
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~~~~~drv~~l~~G~i~~~g 220 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL-VPEMADYIYVMDKGRIVAYG 220 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEECCeEEEEC
Confidence 999999999999999999999999999999999999999999875 8999999999984 77899999999999999999
Q ss_pred Cccchh
Q 003437 282 SPVALP 287 (820)
Q Consensus 282 ~~~~~~ 287 (820)
+++++.
T Consensus 221 ~~~~~~ 226 (277)
T PRK13652 221 TVEEIF 226 (277)
T ss_pred CHHHHh
Confidence 988775
No 122
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.4e-41 Score=363.06 Aligned_cols=222 Identities=29% Similarity=0.496 Sum_probs=188.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCceEEEECCEeC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG-SLEGSVRIDGKPV 125 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~-~~~G~I~i~G~~~ 125 (820)
.|+++||+++|++ +.+|+|+||++.+||+++|+||||||||||+++|+|++++. +.+|+|.++|.++
T Consensus 4 ~l~~~nl~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~ 71 (262)
T PRK09984 4 IIRVEKLAKTFNQ------------HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTV 71 (262)
T ss_pred EEEEeeEEEEeCC------------eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEec
Confidence 5999999999853 34999999999999999999999999999999999998653 2469999999987
Q ss_pred CCc--------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 003437 126 TTS--------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP-----PSISRDEKKKRVYELLDQLGLRSATHTYIG 192 (820)
Q Consensus 126 ~~~--------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~-----~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig 192 (820)
... ..++.++|++|++.+++.+||.||+.+......+ .....++.+++++++++.+||.+..++.++
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 151 (262)
T PRK09984 72 QREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVS 151 (262)
T ss_pred ccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcc
Confidence 421 2245689999999999999999999876421100 001123445678999999999877777665
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEE
Q 003437 193 NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIV 271 (820)
Q Consensus 193 ~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~l 271 (820)
.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||++.. +..+||++++
T Consensus 152 -----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~-~~~~~d~i~~ 225 (262)
T PRK09984 152 -----TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDY-ALRYCERIVA 225 (262)
T ss_pred -----ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEE
Confidence 6999999999999999999999999999999999999999999999986 48999999999974 7789999999
Q ss_pred EeCCeEEEEcCccch
Q 003437 272 LARGRLVYMGSPVAL 286 (820)
Q Consensus 272 L~~G~iv~~G~~~~~ 286 (820)
|++|++++.|+++++
T Consensus 226 l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 226 LRQGHVFYDGSSQQF 240 (262)
T ss_pred EECCEEEEeCCHHHh
Confidence 999999999987653
No 123
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-41 Score=364.27 Aligned_cols=222 Identities=29% Similarity=0.436 Sum_probs=187.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++... ..+.+|+|+|++|++||+++|+||||||||||+++|+|+++ +++|+|.++|+++.
T Consensus 2 ~l~~~~l~~~~~~~~~-------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~ 72 (280)
T PRK13649 2 GINLQNVSYTYQAGTP-------FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLIT 72 (280)
T ss_pred eEEEEEEEEEcCCCCc-------cccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 4899999999964210 01359999999999999999999999999999999999885 46899999999875
Q ss_pred C-------ccccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 003437 127 T-------SYMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGR 196 (820)
Q Consensus 127 ~-------~~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~ 196 (820)
. ...++.++|++|++ .+++ .||+||+.+..... ..+.++..++++++++.+||.+ ..++.++
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 144 (280)
T PRK13649 73 STSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNPF---- 144 (280)
T ss_pred ccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcc----
Confidence 3 12346689999996 4565 69999998875432 2344555667889999999973 5566554
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +..+||++++|++|+
T Consensus 145 -~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~-~~~~~d~i~~l~~G~ 222 (280)
T PRK13649 145 -ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDD-VANYADFVYVLEKGK 222 (280)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHH-HHHhCCEEEEEECCE
Confidence 699999999999999999999999999999999999999999999998779999999999974 778999999999999
Q ss_pred EEEEcCccchh
Q 003437 277 LVYMGSPVALP 287 (820)
Q Consensus 277 iv~~G~~~~~~ 287 (820)
+++.|+++++.
T Consensus 223 i~~~g~~~~~~ 233 (280)
T PRK13649 223 LVLSGKPKDIF 233 (280)
T ss_pred EEEeCCHHHHh
Confidence 99999987764
No 124
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-41 Score=360.23 Aligned_cols=208 Identities=24% Similarity=0.412 Sum_probs=182.6
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++ +.+|+|+|++|++||+++|+||||||||||+|+|+|+++ +++|+|.++|.++
T Consensus 11 ~~l~i~~l~~~~~~------------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 76 (257)
T PRK11247 11 TPLLLNAVSKRYGE------------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPL 76 (257)
T ss_pred CcEEEEEEEEEECC------------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEH
Confidence 45999999999953 249999999999999999999999999999999999885 4689999999876
Q ss_pred CCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 126 TTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
. ..++.++|++|++.+++.+||+||+.+... . ...+++.++++.+||.+..++.+. .|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-------~--~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-------G--QWRDAALQALAAVGLADRANEWPA-----ALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-------c--hHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHH
Confidence 4 245678999999999998999999987521 0 123568889999999887776654 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
||+||++|+.+|++|||||||+|||+.++..+.+.|+++.+ .|.|||++||+++. +..+||++++|++|++++.|+.+
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~-~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSE-AVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999999999999999999965 58999999999974 77889999999999999988754
No 125
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-41 Score=357.80 Aligned_cols=223 Identities=25% Similarity=0.382 Sum_probs=184.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC---CCCCCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI---AQGSLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~---~~~~~~G~I~i~G~ 123 (820)
.|+++|+++.|+. +.+|+|+|+++++||+++|+||||||||||+|+|+|+. ++.+++|+|.++|+
T Consensus 3 ~l~~~~~~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14245 3 KIDARDVNFWYGD------------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGR 70 (250)
T ss_pred EEEEEEEEEEECC------------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCE
Confidence 5999999999853 24999999999999999999999999999999999973 22235899999999
Q ss_pred eCCCc-----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 124 PVTTS-----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 124 ~~~~~-----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
++... ..++.++|++|++.+++ .||.||+.+....+. ....+...+.++++++.+||.+...... +..+..
T Consensus 71 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~ 146 (250)
T PRK14245 71 NIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKL-KESAFA 146 (250)
T ss_pred ecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhh-hCCccc
Confidence 87531 23557899999998887 599999988754431 1122334567889999999865321111 123457
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++. +++|||+++|+++. +.++||++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~-~~~~~d~v~~l~~G~~~ 224 (250)
T PRK14245 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQ-AARVSDKTAFFYMGEMV 224 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHH-HHhhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999995 47999999999984 77899999999999999
Q ss_pred EEcCccchh
Q 003437 279 YMGSPVALP 287 (820)
Q Consensus 279 ~~G~~~~~~ 287 (820)
+.|+++++.
T Consensus 225 ~~~~~~~~~ 233 (250)
T PRK14245 225 EYDDTKKIF 233 (250)
T ss_pred EECCHHHHh
Confidence 999988774
No 126
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.1e-41 Score=352.12 Aligned_cols=207 Identities=34% Similarity=0.511 Sum_probs=176.3
Q ss_pred EEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc
Q 003437 49 EFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS 128 (820)
Q Consensus 49 ~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~ 128 (820)
+++||+++|++. .+.+|+|+||++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++...
T Consensus 1 ~~~~l~~~~~~~----------~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~ 68 (211)
T cd03225 1 ELKNLSFSYPDG----------ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKL 68 (211)
T ss_pred CceeEEEecCCC----------CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccC
Confidence 368999988531 1359999999999999999999999999999999999885 4689999999987532
Q ss_pred ---cccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 129 ---YMKMVSSYVMQDDQ-LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 129 ---~~~~~~gyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
..++.++|++|++. .++.+||+||+.+..... .....+..++++++++.+||.+..++.++ .||||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~ 140 (211)
T cd03225 69 SLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSPF-----TLSGGQK 140 (211)
T ss_pred CHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHH
Confidence 23567899999974 366789999998865432 12344455678899999999877776664 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
|||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +..+||++++|++|+
T Consensus 141 qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~-~~~~~d~i~~l~~G~ 211 (211)
T cd03225 141 QRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDL-LLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999999999999998779999999999974 778899999999985
No 127
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-42 Score=359.47 Aligned_cols=231 Identities=28% Similarity=0.435 Sum_probs=203.8
Q ss_pred eEEEEEEEEEECccccc------cccc------ccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCC
Q 003437 47 GLEFKNLSYSIMKKQKK------DGVW------ITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSL 114 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~------~~~~------~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~ 114 (820)
.|+++||++-|+++..+ .|.. ..+-..-++|+|++++.||+..|||-||||||||+++|.++.. |+
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt 81 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PT 81 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CC
Confidence 49999999999764321 1111 1122346899999999999999999999999999999999985 46
Q ss_pred ceEEEECCEeCCCc-------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 003437 115 EGSVRIDGKPVTTS-------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT 187 (820)
Q Consensus 115 ~G~I~i~G~~~~~~-------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 187 (820)
.|+|+++|.++... ..++.+++|||+..|+|+.||.||..|+.+++ +++++++++++.++|+.+||+...
T Consensus 82 ~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~ 158 (386)
T COG4175 82 RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYA 158 (386)
T ss_pred CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhh
Confidence 89999999998542 24567899999999999999999999999886 688999999999999999999988
Q ss_pred cccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhc
Q 003437 188 HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLL 266 (820)
Q Consensus 188 ~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~ 266 (820)
++++. +|||||||||.|||||+.+|+|||+|||+|+|||--+.++.+.|.+|.++ ++|||++|||.+ ++.++.
T Consensus 159 ~~yp~-----eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG 232 (386)
T COG4175 159 DKYPN-----ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIG 232 (386)
T ss_pred hcCcc-----cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhcc
Confidence 88765 79999999999999999999999999999999999999999999999764 999999999998 588999
Q ss_pred CEEEEEeCCeEEEEcCccchhh
Q 003437 267 DRIIVLARGRLVYMGSPVALPA 288 (820)
Q Consensus 267 D~v~lL~~G~iv~~G~~~~~~~ 288 (820)
|||.+|++|+||..|+|++++.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHc
Confidence 9999999999999999999874
No 128
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.9e-41 Score=376.97 Aligned_cols=229 Identities=27% Similarity=0.391 Sum_probs=194.6
Q ss_pred EEEEEEEEEECccccc------ccc------cccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCc
Q 003437 48 LEFKNLSYSIMKKQKK------DGV------WITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE 115 (820)
Q Consensus 48 L~~~nls~~~~~~~~~------~~~------~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~ 115 (820)
|+++||.+-|+.+..+ .|. ...+...+|+|+||+|++||+++|+||||||||||+|+|+|+++ +++
T Consensus 1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~ 78 (382)
T TIGR03415 1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSR 78 (382)
T ss_pred CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCC
Confidence 5788999988754211 111 11234568999999999999999999999999999999999985 468
Q ss_pred eEEEECCE----eCCCc---c----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 003437 116 GSVRIDGK----PVTTS---Y----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR 184 (820)
Q Consensus 116 G~I~i~G~----~~~~~---~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 184 (820)
|+|+++|+ ++... . .++.++||+|++.++|.+||+||+.++...+ +.++.+.++++.++++.+||+
T Consensus 79 G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~ 155 (382)
T TIGR03415 79 GSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLA 155 (382)
T ss_pred cEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCc
Confidence 99999997 33211 1 1256899999999999999999999986543 245666778899999999999
Q ss_pred ccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHH
Q 003437 185 SATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQ 263 (820)
Q Consensus 185 ~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~ 263 (820)
+..++.++ +|||||||||+|||+|+.+|+||||||||+|||+.++.++.+.|+++.++ |+|||++|||++. +.
T Consensus 156 ~~~~~~~~-----~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e-~~ 229 (382)
T TIGR03415 156 QWADKKPG-----ELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDE-AL 229 (382)
T ss_pred hhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HH
Confidence 88877765 69999999999999999999999999999999999999999999999875 9999999999984 78
Q ss_pred hhcCEEEEEeCCeEEEEcCccchh
Q 003437 264 MLLDRIIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 264 ~~~D~v~lL~~G~iv~~G~~~~~~ 287 (820)
++||++++|++|+++..|+++++.
T Consensus 230 ~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 230 KIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred HhCCEEEEEECCEEEEecCHHHHh
Confidence 899999999999999999998775
No 129
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-41 Score=360.72 Aligned_cols=221 Identities=24% Similarity=0.379 Sum_probs=187.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++ +++|+|.++|+++.
T Consensus 2 ~l~~~~l~~~~~~------------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (255)
T PRK11231 2 TLRTENLTVGYGT------------KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEEeEEEEECC------------EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhH
Confidence 4899999999853 249999999999999999999999999999999999875 46899999999864
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
. ...++.++|++|+..+++.+||.||+.++...... .....++..++++++++.+||.+..++.++ .||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLT-----DLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcc-----cCCHH
Confidence 3 12345689999999888889999999875321000 011123345678899999999887777664 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.++||++++|++|+++..|+
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~-~~~~~d~i~~l~~G~i~~~~~ 221 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQ-ASRYCDHLVVLANGHVMAQGT 221 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHH-HHHhcCEEEEEECCeEEEEcC
Confidence 9999999999999999999999999999999999999999998779999999999984 788999999999999999998
Q ss_pred ccchh
Q 003437 283 PVALP 287 (820)
Q Consensus 283 ~~~~~ 287 (820)
++++.
T Consensus 222 ~~~~~ 226 (255)
T PRK11231 222 PEEVM 226 (255)
T ss_pred HHHhc
Confidence 77653
No 130
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-41 Score=359.84 Aligned_cols=226 Identities=23% Similarity=0.374 Sum_probs=186.8
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC---CCCceEEEEC
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ---GSLEGSVRID 121 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~---~~~~G~I~i~ 121 (820)
...|+++||++.|++ +.+|+|+|++|++||+++|+|||||||||||++|+|+.++ .+++|+|+++
T Consensus 17 ~~~l~~~nl~~~~~~------------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~ 84 (267)
T PRK14235 17 EIKMRARDVSVFYGE------------KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLD 84 (267)
T ss_pred CceEEEEeEEEEECC------------EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEEC
Confidence 346999999999953 2499999999999999999999999999999999999854 2478999999
Q ss_pred CEeCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 003437 122 GKPVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGR 196 (820)
Q Consensus 122 G~~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~ 196 (820)
|+++.. ...++.++|++|++.+++. ||.||+.+....+. ...+..+..+++.++++.+||.+...... +..+
T Consensus 85 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~ 161 (267)
T PRK14235 85 GEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHG-LARSKAELDEIVETSLRKAGLWEEVKDRL-HEPG 161 (267)
T ss_pred CEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHcCCchhhhHHh-hCCc
Confidence 998752 1235678999999988885 99999998764331 01123344567899999999964211111 1223
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
+.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|+++. +..+||++++|++|+
T Consensus 162 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~-~~~~~d~v~~l~~G~ 239 (267)
T PRK14235 162 TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQ-AARVSQRTAFFHLGN 239 (267)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHH-HHhhCCEEEEEECCE
Confidence 57999999999999999999999999999999999999999999999975 6899999999984 778999999999999
Q ss_pred EEEEcCccchh
Q 003437 277 LVYMGSPVALP 287 (820)
Q Consensus 277 iv~~G~~~~~~ 287 (820)
++..|+++++.
T Consensus 240 i~~~g~~~~~~ 250 (267)
T PRK14235 240 LVEVGDTEKMF 250 (267)
T ss_pred EEEeCCHHHHH
Confidence 99999887663
No 131
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-41 Score=394.15 Aligned_cols=223 Identities=26% Similarity=0.395 Sum_probs=193.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+|+|+|++++.+++|+|.++|.++.
T Consensus 5 ~l~~~nl~~~~~~------------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 72 (506)
T PRK13549 5 LLEMKNITKTFGG------------VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ 72 (506)
T ss_pred eEEEeeeEEEeCC------------eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 5999999999953 2499999999999999999999999999999999999865346899999999885
Q ss_pred Ccc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 TSY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
... .++.++||+|++.+++.+||+||+.++...+.....+.++..++++++++.+||.+..++.++ +||||
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 147 (506)
T PRK13549 73 ASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVG-----NLGLG 147 (506)
T ss_pred CCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchh-----hCCHH
Confidence 321 245689999999999999999999987543211112344456678999999999887777765 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||+||++|+.+|++|||||||+|||+.++..+.++|++++++|.|||++||+++. +..+||++++|++|++++.|+
T Consensus 148 qkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~-~~~~~d~v~~l~~G~i~~~~~ 226 (506)
T PRK13549 148 QQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNE-VKAISDTICVIRDGRHIGTRP 226 (506)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHH-HHHhcCEEEEEECCEEeeecc
Confidence 9999999999999999999999999999999999999999998789999999999974 778999999999999999999
Q ss_pred ccchh
Q 003437 283 PVALP 287 (820)
Q Consensus 283 ~~~~~ 287 (820)
++++.
T Consensus 227 ~~~~~ 231 (506)
T PRK13549 227 AAGMT 231 (506)
T ss_pred cccCC
Confidence 87763
No 132
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=3.5e-41 Score=360.60 Aligned_cols=228 Identities=26% Similarity=0.376 Sum_probs=189.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+...... ...++.+|+|+|++|++||+++|+|||||||||||++|+|+++ +.+|+|.++|+++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~---~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFG---AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLY 76 (265)
T ss_pred eEEEEeEEEEeccCcccc---ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 389999999995310000 0012469999999999999999999999999999999999885 46899999999875
Q ss_pred Cc------cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 003437 127 TS------YMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRR 197 (820)
Q Consensus 127 ~~------~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~ 197 (820)
.. ..++.++|++|++ .+++.+||+||+.+...... .....+..+++.++++.+||. +..++.++
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~----- 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKLPR----- 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCChh-----
Confidence 32 1345689999996 46778999999987654211 233444567789999999996 56666654
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++.. +..+||++++|++|+
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~-~~~~~d~i~~l~~G~ 228 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRL-VQSFCQRVAVMDKGQ 228 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH-HHHHhcEEEEEeCCE
Confidence 69999999999999999999999999999999999999999999999875 8999999999984 778999999999999
Q ss_pred EEEEcCccchh
Q 003437 277 LVYMGSPVALP 287 (820)
Q Consensus 277 iv~~G~~~~~~ 287 (820)
+++.|+++++.
T Consensus 229 i~~~g~~~~~~ 239 (265)
T TIGR02769 229 IVEECDVAQLL 239 (265)
T ss_pred EEEECCHHHHc
Confidence 99999987764
No 133
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-41 Score=359.34 Aligned_cols=221 Identities=25% Similarity=0.412 Sum_probs=187.1
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC---CCCceEEEEC
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ---GSLEGSVRID 121 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~---~~~~G~I~i~ 121 (820)
...|+++|+++.|++ +.+|+|+|++|++||+++|+||||||||||+|+|+|+..+ .+++|+|.++
T Consensus 11 ~~~l~~~~l~~~~~~------------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~ 78 (260)
T PRK10744 11 PSKIQVRNLNFYYGK------------FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLD 78 (260)
T ss_pred CceEEEEEEEEEeCC------------eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEEC
Confidence 446999999999953 2499999999999999999999999999999999999752 1468999999
Q ss_pred CEeCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccc
Q 003437 122 GKPVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS----ATHTYIG 192 (820)
Q Consensus 122 G~~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~ig 192 (820)
|+++.. ...++.++|++|++.+++ .||+||+.+...... ..+.++..++++++++.+++.+ ..++.
T Consensus 79 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 153 (260)
T PRK10744 79 GENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS-- 153 (260)
T ss_pred CEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC--
Confidence 998742 123567999999998888 799999988754321 2344555677899999999853 33443
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 193 NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 193 ~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
+..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++.. +..+||++++|
T Consensus 154 ---~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~-~~~~~d~i~~l 228 (260)
T PRK10744 154 ---GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQQ-AARCSDYTAFM 228 (260)
T ss_pred ---CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHH-HHHhCCEEEEE
Confidence 357999999999999999999999999999999999999999999999964 7899999999974 77899999999
Q ss_pred eCCeEEEEcCccchh
Q 003437 273 ARGRLVYMGSPVALP 287 (820)
Q Consensus 273 ~~G~iv~~G~~~~~~ 287 (820)
++|+++..|+++++.
T Consensus 229 ~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 229 YLGELIEFGNTDTIF 243 (260)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999887664
No 134
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=5e-41 Score=351.32 Aligned_cols=214 Identities=29% Similarity=0.431 Sum_probs=182.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++.. ....+|+|+|+++++||+++|+||||||||||+++|+|+++ +++|+|.++|+++.
T Consensus 6 ~l~~~~l~~~~~~~~--------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~ 75 (228)
T PRK10584 6 IVEVHHLKKSVGQGE--------HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPLH 75 (228)
T ss_pred eEEEeeeEEEccCCC--------cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEcc
Confidence 599999999986421 01248999999999999999999999999999999999875 46899999999875
Q ss_pred Ccc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 003437 127 TSY-------MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 127 ~~~-------~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~L 199 (820)
... .++.++|++|++.+++.+||.||+.+....+ .....+..+++.++++.+||.+..++.+. .|
T Consensus 76 ~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~L 147 (228)
T PRK10584 76 QMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLPA-----QL 147 (228)
T ss_pred cCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChh-----hC
Confidence 321 1246899999999999999999998865432 12344556788999999999887777664 69
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
|||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|+++. + ..||++++|++|+++
T Consensus 148 S~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~g~i~ 225 (228)
T PRK10584 148 SGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL-A-ARCDRRLRLVNGQLQ 225 (228)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999764 8999999999974 5 459999999999987
Q ss_pred EE
Q 003437 279 YM 280 (820)
Q Consensus 279 ~~ 280 (820)
+.
T Consensus 226 ~~ 227 (228)
T PRK10584 226 EE 227 (228)
T ss_pred ec
Confidence 53
No 135
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=9.4e-42 Score=353.15 Aligned_cols=210 Identities=30% Similarity=0.491 Sum_probs=175.3
Q ss_pred EEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc
Q 003437 49 EFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS 128 (820)
Q Consensus 49 ~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~ 128 (820)
+++||+++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++ +++|+|.++|+++.
T Consensus 1 ~~~~l~~~~~~------------~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~-- 64 (213)
T cd03235 1 EVEDLTVSYGG------------HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE-- 64 (213)
T ss_pred CcccceeEECC------------EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--
Confidence 36789998853 249999999999999999999999999999999999875 46899999998764
Q ss_pred cccceEEEEccCCCCC--CCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 129 YMKMVSSYVMQDDQLF--PMLTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 129 ~~~~~~gyv~Q~~~l~--~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
..++.++|++|++.++ ..+||+||+.+....... .....++..++++++++.+||++..++.++ .|||||||
T Consensus 65 ~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~q 139 (213)
T cd03235 65 KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIG-----ELSGGQQQ 139 (213)
T ss_pred HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHH
Confidence 2456789999998763 337999999886432110 001123345678999999999877777664 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.++||++++|++| +++.|
T Consensus 140 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~-~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 140 RVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGL-VLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999999999998789999999999974 77899999999876 66554
No 136
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-41 Score=358.37 Aligned_cols=220 Identities=22% Similarity=0.333 Sum_probs=186.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G~ 123 (820)
.|+++||+++|++ +.+|+|+|++|++||+++|+||||||||||||+|+|++.+. +++|+|.++|+
T Consensus 4 ~l~i~~v~~~~~~------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~ 71 (258)
T PRK14241 4 RIDVKDLNIYYGS------------FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGE 71 (258)
T ss_pred cEEEeeEEEEECC------------EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCE
Confidence 4999999999953 24999999999999999999999999999999999998643 36899999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR----SATHTYIGNE 194 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~ 194 (820)
++.. ...++.++|++|++.+++.+||+||+.+....+. ..+.++..++++++++.+||. +..++.+
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--- 146 (258)
T PRK14241 72 DLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKPG--- 146 (258)
T ss_pred eccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCCc---
Confidence 8742 1235678999999999999999999988765331 123445566788999999985 2344443
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe-
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA- 273 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~- 273 (820)
.+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|+++. +.++||++++|+
T Consensus 147 --~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~~-~~~~~d~i~~l~~ 222 (258)
T PRK14241 147 --GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQQ-AARVSDQTAFFNL 222 (258)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH-HHHhCCEEEEEec
Confidence 57999999999999999999999999999999999999999999999964 6899999999974 778999999997
Q ss_pred -----CCeEEEEcCccchh
Q 003437 274 -----RGRLVYMGSPVALP 287 (820)
Q Consensus 274 -----~G~iv~~G~~~~~~ 287 (820)
+|++++.|+++++.
T Consensus 223 ~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 223 EATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred ccCCCCceEEecCCHHHHH
Confidence 79999999887764
No 137
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.3e-42 Score=327.97 Aligned_cols=213 Identities=32% Similarity=0.499 Sum_probs=188.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|++++++++++... .+..||++|++.|++||.++|+|||||||||||-+|+|+.. +++|+|.+.|+++.
T Consensus 6 ii~~~~l~ktvg~~~--------~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~ 75 (228)
T COG4181 6 IIEVHHLSKTVGQGE--------GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLH 75 (228)
T ss_pred eeehhhhhhhhcCCC--------cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchh
Confidence 589999999986543 34679999999999999999999999999999999999875 56899999999986
Q ss_pred Cc-------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 003437 127 TS-------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 127 ~~-------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~L 199 (820)
.. ...+++|+|||...|+|+||..||+..++.++.. +..+....+.++|+.+||.+..+.+.+ +|
T Consensus 76 ~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~HyP~-----qL 147 (228)
T COG4181 76 KLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTHYPA-----QL 147 (228)
T ss_pred hcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCcccccccCcc-----cc
Confidence 42 2456799999999999999999999999988732 334456678899999999998877765 79
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
||||+|||+||||++..|+|||.||||-+||..+..+|.++|-.+.. .|.|.|++||||.. ..-|||.+-|.+|+++
T Consensus 148 SGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~L--A~Rc~R~~r~~~G~l~ 225 (228)
T COG4181 148 SGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQL--AARCDRQLRLRSGRLV 225 (228)
T ss_pred CchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHH--HHhhhheeeeecceec
Confidence 99999999999999999999999999999999999999999999976 59999999999974 5569999999999997
Q ss_pred E
Q 003437 279 Y 279 (820)
Q Consensus 279 ~ 279 (820)
.
T Consensus 226 ~ 226 (228)
T COG4181 226 E 226 (228)
T ss_pred c
Confidence 4
No 138
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2e-41 Score=354.78 Aligned_cols=213 Identities=28% Similarity=0.472 Sum_probs=182.3
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++ +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (230)
T TIGR03410 1 LEVSNLNVYYGQ------------SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITK 66 (230)
T ss_pred CEEEeEEEEeCC------------eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCC
Confidence 578999999853 249999999999999999999999999999999999885 468999999998753
Q ss_pred c----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCChH
Q 003437 128 S----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLG-LRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 128 ~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~ig~~~~~~LSGG 202 (820)
. ..++.++|++|++.+++.+||.||+.+....+. .. ..+.++++++.++ +.+..++.+. .||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~~~-----~LS~G 135 (230)
T TIGR03410 67 LPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRRGG-----DLSGG 135 (230)
T ss_pred CCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCChh-----hCCHH
Confidence 2 124568999999999999999999988754321 11 2234577788776 5665666654 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +..+||++++|++|++++.|
T Consensus 136 ~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~~~~d~v~~l~~g~i~~~~ 214 (230)
T TIGR03410 136 QQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDF-ARELADRYYVMERGRVVASG 214 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHH-HHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999874 8999999999974 77899999999999999999
Q ss_pred Cccch
Q 003437 282 SPVAL 286 (820)
Q Consensus 282 ~~~~~ 286 (820)
+++++
T Consensus 215 ~~~~~ 219 (230)
T TIGR03410 215 AGDEL 219 (230)
T ss_pred CHHHc
Confidence 88766
No 139
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-41 Score=361.54 Aligned_cols=222 Identities=25% Similarity=0.396 Sum_probs=187.9
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++ +++|+|.++|.++
T Consensus 10 ~~l~i~~l~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 10 TTFALRNVSFRVPG------------RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred ceEEEeeEEEEECC------------EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 35999999999853 249999999999999999999999999999999999875 4689999999987
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
.. ...++.++|++|+..+++.+||.||+.+....... .........++++++++.+||++..++.++ .|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVD-----SLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc-----cCCH
Confidence 42 22345689999998888889999999875321100 001122345678899999999877777765 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++. +.++||++++|++|+++..
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~-i~~~~d~i~~l~~G~i~~~ 229 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINM-AARYCDYLVALRGGEMIAQ 229 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECCeEEEe
Confidence 9999999999999999999999999999999999999999999865 8999999999974 7789999999999999999
Q ss_pred cCccchh
Q 003437 281 GSPVALP 287 (820)
Q Consensus 281 G~~~~~~ 287 (820)
|+++++.
T Consensus 230 ~~~~~~~ 236 (265)
T PRK10575 230 GTPAELM 236 (265)
T ss_pred cCHHHhc
Confidence 9876653
No 140
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-41 Score=362.75 Aligned_cols=223 Identities=27% Similarity=0.435 Sum_probs=190.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+.... ...+.+|+|+|++|++||+++|+||||||||||+++|+|+++ +++|+|.++|.++.
T Consensus 4 ~l~~~~l~~~~~~~~~------~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~ 75 (280)
T PRK13633 4 MIKCKNVSYKYESNEE------STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDTS 75 (280)
T ss_pred eEEEeeeEEEcCCCCC------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecc
Confidence 5999999999964210 012459999999999999999999999999999999999985 46899999999885
Q ss_pred C----ccccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 003437 127 T----SYMKMVSSYVMQDDQ--LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS 200 (820)
Q Consensus 127 ~----~~~~~~~gyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS 200 (820)
. ...++.+||++|++. ++ ..||.||+.|..... +.++.+..++++++++.+||++..++.++ .||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS 146 (280)
T PRK13633 76 DEENLWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAPH-----LLS 146 (280)
T ss_pred ccccHHHHhhheEEEecChhhhhc-cccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----cCC
Confidence 3 123567899999974 44 469999999875432 23455666789999999999988887765 699
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||+++. +.. ||++++|++|++++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~~-~d~v~~l~~G~i~~ 224 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AVE-ADRIIVMDSGKVVM 224 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hhc-CCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999976 49999999999985 554 99999999999999
Q ss_pred EcCccchhh
Q 003437 280 MGSPVALPA 288 (820)
Q Consensus 280 ~G~~~~~~~ 288 (820)
.|+++++..
T Consensus 225 ~g~~~~~~~ 233 (280)
T PRK13633 225 EGTPKEIFK 233 (280)
T ss_pred ecCHHHHhc
Confidence 999988754
No 141
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-41 Score=359.08 Aligned_cols=220 Identities=25% Similarity=0.375 Sum_probs=188.8
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++|++++|++. .+.+|+|+|++|++||+++|+||||||||||+++|+|+++ +.+|+|.++|+++
T Consensus 6 ~~l~i~~l~~~~~~~----------~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 73 (269)
T PRK13648 6 SIIVFKNVSFQYQSD----------ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAI 73 (269)
T ss_pred ceEEEEEEEEEcCCC----------CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 359999999998532 1348999999999999999999999999999999999985 4689999999987
Q ss_pred CCc---cccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 126 TTS---YMKMVSSYVMQDDQ-LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
... ..++.++|++|++. +++..|+.+|+.+..... ....++..+++.++++.+|+.+..++.+. .|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEPN-----ALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCcc-----cCCH
Confidence 532 34567899999974 677789999998875432 23445556678899999999887776654 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++. +.. ||++++|++|++++.
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~~-~d~i~~l~~G~i~~~ 223 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AME-ADHVIVMNKGTVYKE 223 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hhc-CCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999864 8999999999975 554 999999999999999
Q ss_pred cCccchh
Q 003437 281 GSPVALP 287 (820)
Q Consensus 281 G~~~~~~ 287 (820)
|+++++.
T Consensus 224 g~~~~~~ 230 (269)
T PRK13648 224 GTPTEIF 230 (269)
T ss_pred cCHHHHh
Confidence 9987764
No 142
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-41 Score=361.08 Aligned_cols=217 Identities=31% Similarity=0.525 Sum_probs=187.7
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||++.|.+. +.+|+|+|++|++||+++|+||||||||||+|+|+|+++ +.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~~-----------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~ 68 (275)
T PRK13639 2 LETRDLKYSYPDG-----------TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIKY 68 (275)
T ss_pred EEEEEEEEEeCCC-----------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECcc
Confidence 7899999999521 249999999999999999999999999999999999885 458999999998742
Q ss_pred c-----cccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 003437 128 S-----YMKMVSSYVMQDDQ--LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS 200 (820)
Q Consensus 128 ~-----~~~~~~gyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS 200 (820)
. ..++.++|++|++. ++ ..||.||+.+..... ....++..+++.++++.+||.+..++.++ .||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LS 139 (275)
T PRK13639 69 DKKSLLEVRKTVGIVFQNPDDQLF-APTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPPH-----HLS 139 (275)
T ss_pred ccchHHHHHhheEEEeeChhhhhc-cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCChh-----hCC
Confidence 1 23567899999963 44 469999998764321 23455566788999999999988877765 699
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
||||||++||++|+.+|++|||||||+|||+.++..+.++|++++++|.|||+++|+++. +.++||++++|++|++++.
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~-~~~~~d~i~~l~~G~i~~~ 218 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDL-VPVYADKVYVMSDGKIIKE 218 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999998779999999999974 7788999999999999999
Q ss_pred cCccchh
Q 003437 281 GSPVALP 287 (820)
Q Consensus 281 G~~~~~~ 287 (820)
|+++++.
T Consensus 219 g~~~~~~ 225 (275)
T PRK13639 219 GTPKEVF 225 (275)
T ss_pred CCHHHHh
Confidence 9988764
No 143
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-41 Score=361.14 Aligned_cols=220 Identities=25% Similarity=0.415 Sum_probs=188.8
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++|+++.|++. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|.++
T Consensus 6 ~~l~~~nl~~~~~~~----------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 73 (271)
T PRK13632 6 VMIKVENVSFSYPNS----------ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITI 73 (271)
T ss_pred eEEEEEeEEEEcCCC----------CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEec
Confidence 359999999998521 2359999999999999999999999999999999999985 4689999999988
Q ss_pred CCc---cccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 126 TTS---YMKMVSSYVMQDDQ-LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
... ..++.++|++|++. .++.+||+||+.+..... ..+.++..++++++++.+||.+..++.+. .|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEPQ-----NLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCcc-----cCCH
Confidence 532 34567899999974 567789999998875432 23445556778999999999887777764 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
|||||++||+||+.+|++|||||||+|||+.++..++++|++++++ ++|||+++|+++. +. .||++++|++|+++..
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~v~~l~~G~i~~~ 223 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-AI-LADKVIVFSEGKLIAQ 223 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-Hh-hCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999876 5999999999975 54 7999999999999999
Q ss_pred cCccchh
Q 003437 281 GSPVALP 287 (820)
Q Consensus 281 G~~~~~~ 287 (820)
|+++++.
T Consensus 224 g~~~~~~ 230 (271)
T PRK13632 224 GKPKEIL 230 (271)
T ss_pred cCHHHHh
Confidence 9877654
No 144
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-41 Score=355.58 Aligned_cols=224 Identities=27% Similarity=0.403 Sum_probs=185.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCceEEEECCEeC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ-GSLEGSVRIDGKPV 125 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~-~~~~G~I~i~G~~~ 125 (820)
.++++||++.|++ +.+|+|+|+++++||+++|+||||||||||+|+|+|++.+ .+.+|+|.++|+++
T Consensus 2 ~~~~~~l~~~~~~------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 2 IAKTTNLNLFYGK------------KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred ceeeeeeEEEECC------------EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 4889999999953 2499999999999999999999999999999999998743 35789999999988
Q ss_pred CCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 126 TTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
... ..++.++|++|++.+++ .||+||+.++...+.. ........+++.++++.+||.+...... +..++.||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM-IKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc-ccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHH
Confidence 532 23567899999998887 5999999987543310 0022344567889999999953221111 2234579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ |+|||++||+++. +.++||++++|++|++++.|+
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~-~~~~~d~i~~l~~G~i~~~g~ 224 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQQ-GKRVADYTAFFHLGELIEFGE 224 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHH-HHhhCcEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999865 8999999999974 778999999999999999998
Q ss_pred ccchh
Q 003437 283 PVALP 287 (820)
Q Consensus 283 ~~~~~ 287 (820)
++++.
T Consensus 225 ~~~~~ 229 (246)
T PRK14269 225 SKEFF 229 (246)
T ss_pred HHHHH
Confidence 87654
No 145
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-41 Score=362.80 Aligned_cols=222 Identities=27% Similarity=0.414 Sum_probs=190.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-CceEEEECCEeC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGS-LEGSVRIDGKPV 125 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~-~~G~I~i~G~~~ 125 (820)
.|+++||++.|++. .+.+|+++|++|.+||+++|+||||||||||+++|+|++.+.. .+|+|.++|+++
T Consensus 5 ~l~i~~l~~~~~~~----------~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~ 74 (282)
T PRK13640 5 IVEFKHVSFTYPDS----------KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITL 74 (282)
T ss_pred eEEEEEEEEEcCCC----------CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEEC
Confidence 59999999998531 1349999999999999999999999999999999999985421 139999999998
Q ss_pred CCc---cccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 126 TTS---YMKMVSSYVMQDDQ-LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
... ..++.+||++|++. +++..||.||+.|..... ..++++..+++.++++.+||.+..++.+ +.|||
T Consensus 75 ~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~ 146 (282)
T PRK13640 75 TAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANLSG 146 (282)
T ss_pred CcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCH
Confidence 642 23567899999974 566789999998865432 2456666778999999999988777765 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
|||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. + ..||++++|++|++++.
T Consensus 147 G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~G~i~~~ 224 (282)
T PRK13640 147 GQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDDGKLLAQ 224 (282)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999865 9999999999985 5 47999999999999999
Q ss_pred cCccchhh
Q 003437 281 GSPVALPA 288 (820)
Q Consensus 281 G~~~~~~~ 288 (820)
|+++++..
T Consensus 225 g~~~~~~~ 232 (282)
T PRK13640 225 GSPVEIFS 232 (282)
T ss_pred CCHHHHhc
Confidence 99887643
No 146
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-41 Score=348.29 Aligned_cols=209 Identities=31% Similarity=0.477 Sum_probs=178.4
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|++++|+++ . .|+|+++++||+++|+||||||||||+++|+|+++ +++|+|.++|.++..
T Consensus 1 i~~~~l~~~~~~~------------~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~ 64 (211)
T cd03298 1 VRLDKIRFSYGEQ------------P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTA 64 (211)
T ss_pred CEEEeEEEEeCCE------------e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCc
Confidence 4789999998531 1 29999999999999999999999999999999985 468999999998753
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 128 S-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 128 ~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
. ..++.++|++|++.+++.+||+||+.+...... .. .++.++++.++++.+||.+..++.+. .||||||||
T Consensus 65 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 136 (211)
T cd03298 65 APPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLPG-----ELSGGERQR 136 (211)
T ss_pred CCHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHHH
Confidence 2 234568999999999999999999987643211 11 22345678999999999887777664 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
++||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||+++. +.++||++++|++|+++..|
T Consensus 137 v~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 137 VALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPED-AKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999999976 48999999999974 77889999999999998654
No 147
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3e-41 Score=380.42 Aligned_cols=230 Identities=32% Similarity=0.469 Sum_probs=202.1
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceEEEECCEe
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG--SLEGSVRIDGKP 124 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~--~~~G~I~i~G~~ 124 (820)
.|+++||+++|.... ....+++||||++.+||++||+|.|||||||+.++|.|++++. ..+|+|.++|++
T Consensus 5 lL~V~nL~v~~~~~~--------~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~d 76 (539)
T COG1123 5 LLEVENLTVEFATDG--------GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRD 76 (539)
T ss_pred eEEEeceEEEEecCC--------cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcc
Confidence 699999999997531 2246999999999999999999999999999999999998654 258999999997
Q ss_pred CCCc-------cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 003437 125 VTTS-------YMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEG 195 (820)
Q Consensus 125 ~~~~-------~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~ 195 (820)
+... .+.+.++||||++ .+.|-+||.+.+.-....+.. .+.++.++++.++|+.+||++.... +.+
T Consensus 77 l~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~y 151 (539)
T COG1123 77 LLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DRY 151 (539)
T ss_pred hhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---ccC
Confidence 6431 1346789999997 478889999999888776642 3478889999999999999987655 567
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
|++|||||||||.||+||+.+|++||+||||++||+.++.+|+++|+++.+ .|.++|++|||+.- +.++||||++|++
T Consensus 152 PheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~V-va~~aDrv~Vm~~ 230 (539)
T COG1123 152 PHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYK 230 (539)
T ss_pred CcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHH-HHHhcCeEEEEEC
Confidence 899999999999999999999999999999999999999999999999985 59999999999985 8899999999999
Q ss_pred CeEEEEcCccchhhhh
Q 003437 275 GRLVYMGSPVALPAHL 290 (820)
Q Consensus 275 G~iv~~G~~~~~~~~f 290 (820)
|++++.|++++++..+
T Consensus 231 G~iVE~G~~~~i~~~p 246 (539)
T COG1123 231 GEIVETGPTEEILSNP 246 (539)
T ss_pred CEEEEecCHHHHHhcc
Confidence 9999999999997653
No 148
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-41 Score=355.16 Aligned_cols=224 Identities=21% Similarity=0.368 Sum_probs=186.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CC-CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIA--QG-SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~--~~-~~~G~I~i~G~ 123 (820)
.|+++||+++|++ +.+|+|+|++|++||+++|+||||||||||+++|+|+++ +. +++|+|.++|+
T Consensus 4 ~l~~~nl~~~~~~------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 71 (252)
T PRK14256 4 KVKLEQLNVHFGK------------NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDT 71 (252)
T ss_pred EEEEEEEEEEeCC------------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCE
Confidence 4899999999953 249999999999999999999999999999999999975 21 35899999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
++.. ...++.++|++|++.+++.+||+||+.+...... ..+..+..+++.++++.+|+.+...... +..+..
T Consensus 72 ~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~ 148 (252)
T PRK14256 72 DIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRL-KSNAME 148 (252)
T ss_pred EcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcCc
Confidence 8742 1245678999999999999999999987654321 1233444567889999999864221111 123457
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++. +.++||++++|++|+++
T Consensus 149 LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~-~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14256 149 LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQ-AARVSDYTAFFYMGDLV 226 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHH-HHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999976 5899999999974 77899999999999999
Q ss_pred EEcCccchh
Q 003437 279 YMGSPVALP 287 (820)
Q Consensus 279 ~~G~~~~~~ 287 (820)
..|+++++.
T Consensus 227 ~~~~~~~~~ 235 (252)
T PRK14256 227 ECGETKKIF 235 (252)
T ss_pred EeCCHHHHH
Confidence 999887653
No 149
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=6.5e-41 Score=349.40 Aligned_cols=209 Identities=29% Similarity=0.441 Sum_probs=183.6
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++ +.+|+|.++|.++..
T Consensus 1 l~l~~v~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~ 66 (223)
T TIGR03740 1 LETKNLSKRFGK------------QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTR 66 (223)
T ss_pred CEEEeEEEEECC------------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccc
Confidence 578999999853 249999999999999999999999999999999999875 468999999998754
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 003437 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRV 207 (820)
Q Consensus 128 ~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv 207 (820)
.. .+.++|++|++.+++.+||+||+.+....+. .. .+++.++++.+||++..++.+. .||||||||+
T Consensus 67 ~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rv 133 (223)
T TIGR03740 67 KD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKAK-----QFSLGMKQRL 133 (223)
T ss_pred cc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhHh-----hCCHHHHHHH
Confidence 32 2468999999999998999999988765431 11 2467889999999987777664 6999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 208 SIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 208 ~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++. +.++||++++|++|++++.|++.
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSE-VQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-HHHhcCEEEEEeCCEEEEecChh
Confidence 99999999999999999999999999999999999998789999999999984 77899999999999999999865
No 150
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-41 Score=360.34 Aligned_cols=222 Identities=23% Similarity=0.351 Sum_probs=188.1
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++ +.+|+|+||++.+||+++|+||||||||||+++|+|+++ +++|+|.++|+++
T Consensus 6 ~~l~i~~l~~~~~~------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 71 (265)
T PRK10253 6 ARLRGEQLTLGYGK------------YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHI 71 (265)
T ss_pred cEEEEEEEEEEECC------------EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEh
Confidence 35999999999963 249999999999999999999999999999999999875 4689999999987
Q ss_pred CCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 126 TTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
... ..++.++|++|++.+++.+||+||+.+......+ .....+...+++.++++.+||.+..++.+. .|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 146 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVD-----TLSG 146 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc-----cCCh
Confidence 531 2345689999999999889999999875311100 000112345678899999999877777664 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++.. +.++||++++|++|++++.
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~-~~~~~d~i~~l~~G~i~~~ 225 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQ-ACRYASHLIALREGKIVAQ 225 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999874 8999999999974 8889999999999999999
Q ss_pred cCccchh
Q 003437 281 GSPVALP 287 (820)
Q Consensus 281 G~~~~~~ 287 (820)
|+++++.
T Consensus 226 g~~~~~~ 232 (265)
T PRK10253 226 GAPKEIV 232 (265)
T ss_pred CCHHHHh
Confidence 9877654
No 151
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=4.2e-41 Score=358.17 Aligned_cols=219 Identities=27% Similarity=0.393 Sum_probs=186.2
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|+++.|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++ +.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~~~------------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 67 (256)
T TIGR03873 2 LRLSRVSWSAGG------------RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLHG 67 (256)
T ss_pred ceEEeEEEEECC------------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEccc
Confidence 789999999853 249999999999999999999999999999999999885 468999999998753
Q ss_pred c---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 128 S---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 128 ~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
. ..++.++|++|++.+++.+||+||+.+....... ......+..+++.++++.+|+.+..++.++ .|||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 142 (256)
T TIGR03873 68 LSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMS-----TLSGGE 142 (256)
T ss_pred CCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHHH
Confidence 2 2345689999998877888999999885321000 011122344678899999999877777665 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|+++. +.++||++++|++|++++.|++
T Consensus 143 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~G~i~~~g~~ 221 (256)
T TIGR03873 143 RQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNL-AASYCDHVVVLDGGRVVAAGPP 221 (256)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEeCCCEEEecCH
Confidence 999999999999999999999999999999999999999998778999999999984 7789999999999999999987
Q ss_pred cch
Q 003437 284 VAL 286 (820)
Q Consensus 284 ~~~ 286 (820)
+++
T Consensus 222 ~~~ 224 (256)
T TIGR03873 222 REV 224 (256)
T ss_pred HHh
Confidence 665
No 152
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-42 Score=392.02 Aligned_cols=221 Identities=29% Similarity=0.518 Sum_probs=191.6
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...|+|+||+|.|+.+. +.+||+|+||+|+|||.+||+||||+||||+.++|-.++. |.+|+|++||+|
T Consensus 463 ~G~IeF~~VsFaYP~Rp---------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~~ 531 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTRP---------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGVP 531 (716)
T ss_pred cceEEEEEeeeecCCCC---------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCee
Confidence 34699999999998653 4679999999999999999999999999999999999885 568999999999
Q ss_pred CCC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCCCC
Q 003437 125 VTT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRV-----YELLDQLGLRSATHTYIGNEGR 196 (820)
Q Consensus 125 ~~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~ig~~~~ 196 (820)
+.+ ..+++++|+|.|+|.||.. ||+|||.|+.. ..+.++....+ .+.+. ++++..||.+|+.+.
T Consensus 532 i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEkG~ 603 (716)
T KOG0058|consen 532 ISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD-----NATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEKGS 603 (716)
T ss_pred hhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCccccccccCCccc
Confidence 865 3577899999999999988 99999999864 23444443322 22333 668889999997654
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
+||||||||+||||||++||+||||||.||+||.++...|.+.|.++.+ ++|||++.|..+. + +.+|+|+++++|+
T Consensus 604 -qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLST-V-~~Ad~Ivvi~~G~ 679 (716)
T KOG0058|consen 604 -QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLST-V-RHADQIVVIDKGR 679 (716)
T ss_pred -cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhH-h-hhccEEEEEcCCe
Confidence 7999999999999999999999999999999999999999999999876 4999999999985 4 5699999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
+++.|+.+|+++
T Consensus 680 V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 680 VVEMGTHDELLS 691 (716)
T ss_pred EEecccHHHHhh
Confidence 999999888864
No 153
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=353.98 Aligned_cols=223 Identities=23% Similarity=0.360 Sum_probs=183.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC---CceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGS---LEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~---~~G~I~i~G~ 123 (820)
.|+++||+++|.+ +.+|+|+|+++++||+++|+||||||||||+++|+|+....+ ++|+|.++|+
T Consensus 5 ~l~~~~l~~~~~~------------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~ 72 (252)
T PRK14239 5 ILQVSDLSVYYNK------------KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGH 72 (252)
T ss_pred eEEEEeeEEEECC------------eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCE
Confidence 5999999999853 249999999999999999999999999999999999853223 4899999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
++.. ...++.++||+|++.+++ +||+||+.+....+. ........+++.++++.+++.+...... +..+..
T Consensus 73 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~ 148 (252)
T PRK14239 73 NIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRL-HDSALG 148 (252)
T ss_pred ECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHH-hcCccc
Confidence 8742 123567899999998887 799999998754321 1123334567888999999853211111 223457
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
|||||||||+||++|+.+|++|||||||+|||+.++..+.++|+++++ ++|||++||+++. +.++||++++|++|+++
T Consensus 149 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~-~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14239 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQ-ASRISDRTGFFLDGDLI 226 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHH-HHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999965 6899999999974 78899999999999999
Q ss_pred EEcCccchh
Q 003437 279 YMGSPVALP 287 (820)
Q Consensus 279 ~~G~~~~~~ 287 (820)
+.|+++++.
T Consensus 227 ~~g~~~~~~ 235 (252)
T PRK14239 227 EYNDTKQMF 235 (252)
T ss_pred EeCCHHHHH
Confidence 999987763
No 154
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=9.3e-41 Score=345.84 Aligned_cols=210 Identities=29% Similarity=0.447 Sum_probs=180.3
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
++++||++.|.. +++|+|+++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++..
T Consensus 1 ~~~~~l~~~~~~--------------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 64 (213)
T TIGR01277 1 LALDKVRYEYEH--------------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTG 64 (213)
T ss_pred CeEEeeeEEeCC--------------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEccc
Confidence 478999999841 4679999999999999999999999999999999885 468999999998753
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 128 S-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 128 ~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
. ..++.++|++|++.+++.+|+.||+.+...... ..+.+.+++++++++.+||++..++.+. .||||||||
T Consensus 65 ~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 136 (213)
T TIGR01277 65 LAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL---KLNAEQQEKVVDAAQQVGIADYLDRLPE-----QLSGGQRQR 136 (213)
T ss_pred CChhccceEEEeccCccCCCCcHHHHHHhHhhccC---CccHHHHHHHHHHHHHcCcHHHhhCCcc-----cCCHHHHHH
Confidence 2 245678999999999999999999987643211 1122335678899999999877777654 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
++||++|+.+|++|||||||+|||+.++..+.++|+++.++ |.|||+++|+++. +.++||++++|++|+++..|.
T Consensus 137 l~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~-~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 137 VALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSD-ARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999999999999999999864 8999999999974 778899999999999998874
No 155
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-41 Score=355.98 Aligned_cols=221 Identities=23% Similarity=0.361 Sum_probs=186.0
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC---CceEEEEC
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGS---LEGSVRID 121 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~---~~G~I~i~ 121 (820)
...|+++||++.|+. +.+|+|+|++|++||+++|+||||||||||+++|+|++.+.+ ++|+|.++
T Consensus 10 ~~~l~i~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~ 77 (259)
T PRK14274 10 QEVYQINGMNLWYGQ------------HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYN 77 (259)
T ss_pred CceEEEeeEEEEECC------------eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEEC
Confidence 345999999999853 249999999999999999999999999999999999875312 58999999
Q ss_pred CEeCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc----cccccc
Q 003437 122 GKPVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA----THTYIG 192 (820)
Q Consensus 122 G~~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~----~~~~ig 192 (820)
|+++.. ...++.++|++|++.+++. ||+||+.+....+. ...+++..++++++++.+|+.+. .++.
T Consensus 78 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~-- 152 (259)
T PRK14274 78 GSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQ-- 152 (259)
T ss_pred CEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhCC--
Confidence 998742 1235678999999988886 99999988754321 11334555678889999998642 3343
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 193 NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 193 ~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
+.+||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++. +.++||++++|
T Consensus 153 ---~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~-~~~~~d~i~~l 227 (259)
T PRK14274 153 ---ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQ-AARVSDQTAFF 227 (259)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHH-HHHhCCEEEEE
Confidence 357999999999999999999999999999999999999999999999965 7999999999974 78899999999
Q ss_pred eCCeEEEEcCccchh
Q 003437 273 ARGRLVYMGSPVALP 287 (820)
Q Consensus 273 ~~G~iv~~G~~~~~~ 287 (820)
++|+++..|+++++.
T Consensus 228 ~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 228 YMGELVECNDTNKMF 242 (259)
T ss_pred ECCEEEEECCHHHHh
Confidence 999999999988764
No 156
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-41 Score=354.29 Aligned_cols=213 Identities=33% Similarity=0.453 Sum_probs=183.1
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++.+||+++|+||||||||||+++|+|+++ +++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~~------------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 68 (241)
T PRK14250 3 EIEFKEVSYSSFG------------KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDIK 68 (241)
T ss_pred eEEEEeEEEEeCC------------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 4899999999853 249999999999999999999999999999999999875 46899999999875
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCChH
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSGG 202 (820)
. ...++.++|++|++.+++ .||+||+.+....+ . ...+++.++++.+||+ +..++.+ ..||||
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G 135 (241)
T PRK14250 69 TIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRDV-----KNLSGG 135 (241)
T ss_pred hcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCCc-----ccCCHH
Confidence 3 223567899999998887 59999998754321 1 1235678899999996 4555554 479999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++. +.++||++++|++|+++..|
T Consensus 136 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~-~~~~~d~i~~l~~G~i~~~~ 214 (241)
T PRK14250 136 EAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQ-AKRIGDYTAFLNKGILVEYA 214 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH-HHHhCCEEEEEeCCEEEEeC
Confidence 999999999999999999999999999999999999999999874 9999999999984 77899999999999999999
Q ss_pred Cccchh
Q 003437 282 SPVALP 287 (820)
Q Consensus 282 ~~~~~~ 287 (820)
+++++.
T Consensus 215 ~~~~~~ 220 (241)
T PRK14250 215 KTYDFF 220 (241)
T ss_pred CHHHHh
Confidence 887764
No 157
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=7.3e-41 Score=372.02 Aligned_cols=210 Identities=28% Similarity=0.451 Sum_probs=183.2
Q ss_pred EEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc---
Q 003437 52 NLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS--- 128 (820)
Q Consensus 52 nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~--- 128 (820)
||+++|++. .+ |+||++++||+++|+||||||||||||+|+|+++ +++|+|.++|+++...
T Consensus 4 ~l~~~~~~~-------------~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~ 67 (354)
T TIGR02142 4 RFSKRLGDF-------------SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKG 67 (354)
T ss_pred EEEEEECCE-------------EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccc
Confidence 788888531 24 8999999999999999999999999999999985 4689999999987421
Q ss_pred ----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 129 ----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 129 ----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
..++.++|++|++.+++.+||+||+.|+.... ...+..++++++++.+||.+..++.+. .||||||
T Consensus 68 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGqk 137 (354)
T TIGR02142 68 IFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLPG-----RLSGGEK 137 (354)
T ss_pred cccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHH
Confidence 23567899999999999999999999875421 223445678999999999988877765 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
|||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +..+||++++|++|+++..|++
T Consensus 138 qRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~-~~~~~d~i~~l~~G~i~~~g~~ 216 (354)
T TIGR02142 138 QRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQE-VLRLADRVVVLEDGRVAAAGPI 216 (354)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEeCCEEEEECCH
Confidence 9999999999999999999999999999999999999999875 8999999999974 7889999999999999999998
Q ss_pred cchhh
Q 003437 284 VALPA 288 (820)
Q Consensus 284 ~~~~~ 288 (820)
+++..
T Consensus 217 ~~~~~ 221 (354)
T TIGR02142 217 AEVWA 221 (354)
T ss_pred HHHhc
Confidence 87643
No 158
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-41 Score=371.57 Aligned_cols=209 Identities=28% Similarity=0.467 Sum_probs=183.5
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|++ ||+++|+++ .+ |+||++++||+++|+||||||||||||+|+|+++ +++|+|.++|+++..
T Consensus 2 l~~-~l~k~~~~~-------------~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~ 64 (352)
T PRK11144 2 LEL-NFKQQLGDL-------------CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFD 64 (352)
T ss_pred eEE-EEEEEeCCE-------------EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 677 999998531 23 8999999999999999999999999999999885 468999999998742
Q ss_pred -------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 003437 128 -------SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS 200 (820)
Q Consensus 128 -------~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS 200 (820)
...++.++||+|+..++|.+||+||+.++.. ....++++++++.+||++..++.+. .||
T Consensus 65 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS 130 (352)
T PRK11144 65 AEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYPG-----SLS 130 (352)
T ss_pred cccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCcc-----cCC
Confidence 1235678999999999999999999988642 1234578899999999887777764 699
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
|||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++..+||++++|++|+++.
T Consensus 131 gGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~ 209 (352)
T PRK11144 131 GGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKA 209 (352)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999875 899999999997 4888999999999999999
Q ss_pred EcCccchhh
Q 003437 280 MGSPVALPA 288 (820)
Q Consensus 280 ~G~~~~~~~ 288 (820)
.|+++++..
T Consensus 210 ~g~~~~i~~ 218 (352)
T PRK11144 210 FGPLEEVWA 218 (352)
T ss_pred ecCHHHHHh
Confidence 999988753
No 159
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=353.48 Aligned_cols=219 Identities=25% Similarity=0.383 Sum_probs=185.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G~ 123 (820)
.|+++||++.|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +++|+|.++|.
T Consensus 4 ~l~~~~l~~~~~~------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~ 71 (251)
T PRK14270 4 KMESKNLNLWYGE------------KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGK 71 (251)
T ss_pred EEEEEEeEEEECC------------eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCE
Confidence 5899999999853 24999999999999999999999999999999999987542 36899999999
Q ss_pred eCCCc-----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCC
Q 003437 124 PVTTS-----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS----ATHTYIGNE 194 (820)
Q Consensus 124 ~~~~~-----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~ig~~ 194 (820)
++... ..++.++|++|++.+++ +|++||+.+...... .....+..+++.++++.+||.+ ..++.
T Consensus 72 ~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 144 (251)
T PRK14270 72 NIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKS---- 144 (251)
T ss_pred ecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCC----
Confidence 87531 23566899999998887 899999998754321 1123445567888999998853 23333
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
+..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.++||++++|++
T Consensus 145 -~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~ 221 (251)
T PRK14270 145 -ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLM 221 (251)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999976 589999999997 47889999999999
Q ss_pred CeEEEEcCccchh
Q 003437 275 GRLVYMGSPVALP 287 (820)
Q Consensus 275 G~iv~~G~~~~~~ 287 (820)
|++++.|+++++.
T Consensus 222 G~i~~~~~~~~~~ 234 (251)
T PRK14270 222 GDLIEFNKTEKIF 234 (251)
T ss_pred CeEEEeCCHHHHh
Confidence 9999999987764
No 160
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.2e-41 Score=361.77 Aligned_cols=222 Identities=25% Similarity=0.372 Sum_probs=185.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+++.. ....+|+|+||++++||+++|+||||||||||+|+|+|+++ +++|+|.++|.++.
T Consensus 6 ~l~i~nl~~~~~~~~~-------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 76 (289)
T PRK13645 6 DIILDNVSYTYAKKTP-------FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAIP 76 (289)
T ss_pred eEEEEEEEEEeCCCCc-------cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcc
Confidence 4999999999964210 01249999999999999999999999999999999999985 46899999999874
Q ss_pred C--------ccccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 003437 127 T--------SYMKMVSSYVMQDDQ--LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEG 195 (820)
Q Consensus 127 ~--------~~~~~~~gyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~ 195 (820)
. ...++.++|++|++. +++ .||+||+.+..... ....++..+++.++++.++|. +..++.++
T Consensus 77 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~--- 149 (289)
T PRK13645 77 ANLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSPF--- 149 (289)
T ss_pred ccccccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCChh---
Confidence 1 123567899999973 444 59999998875422 233445556788999999994 56666654
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++. +.++||++++|++
T Consensus 150 --~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~-~~~~~d~i~~l~~ 226 (289)
T PRK13645 150 --ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQ-VLRIADEVIVMHE 226 (289)
T ss_pred --hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999976 48999999999974 7889999999999
Q ss_pred CeEEEEcCccchh
Q 003437 275 GRLVYMGSPVALP 287 (820)
Q Consensus 275 G~iv~~G~~~~~~ 287 (820)
|++++.|+++++.
T Consensus 227 G~i~~~g~~~~~~ 239 (289)
T PRK13645 227 GKVISIGSPFEIF 239 (289)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999887653
No 161
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-41 Score=358.40 Aligned_cols=221 Identities=23% Similarity=0.353 Sum_probs=184.5
Q ss_pred CCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEE
Q 003437 44 PGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRI 120 (820)
Q Consensus 44 ~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i 120 (820)
+...|+++||+++|+. +.+|+|+||+|++||+++|+||||||||||+++|+|++++. +++|+|.+
T Consensus 10 ~~~~l~i~nl~~~~~~------------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~ 77 (269)
T PRK14259 10 KNIIISLQNVTISYGT------------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLF 77 (269)
T ss_pred CCceEEEEeEEEEECC------------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEE
Confidence 4456999999999953 24999999999999999999999999999999999987521 47899999
Q ss_pred CCEeCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccc
Q 003437 121 DGKPVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS----ATHTYI 191 (820)
Q Consensus 121 ~G~~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~i 191 (820)
+|+++.. ...++.++|++|++.+++. ||+||+.+.+..+ .... +..+++.++++.+++.. ..++.
T Consensus 78 ~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~- 151 (269)
T PRK14259 78 DGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN---GYTG-DMDELVERSLRKAAVWDECKDKLNES- 151 (269)
T ss_pred CCEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc---CCcH-HHHHHHHHHHHHhCCcchhhhhhCCC-
Confidence 9998742 2235668999999988885 9999999876533 1222 33456788899888743 33443
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEE
Q 003437 192 GNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIV 271 (820)
Q Consensus 192 g~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 271 (820)
+..|||||||||+|||+|+.+|++|||||||+|||+.++..+.++|+++++ +.|||++||+++. +..+||++++
T Consensus 152 ----~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~-~~~~~d~i~~ 225 (269)
T PRK14259 152 ----GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQQ-AVRVSDMTAF 225 (269)
T ss_pred ----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HHHhcCEEEE
Confidence 457999999999999999999999999999999999999999999999964 7899999999974 7889999999
Q ss_pred EeC-----------CeEEEEcCccchhh
Q 003437 272 LAR-----------GRLVYMGSPVALPA 288 (820)
Q Consensus 272 L~~-----------G~iv~~G~~~~~~~ 288 (820)
|++ |++++.|+++++..
T Consensus 226 l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 226 FNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred EeccccccccccccceEEEeCCHHHHHh
Confidence 996 67899999887753
No 162
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-41 Score=350.47 Aligned_cols=215 Identities=27% Similarity=0.452 Sum_probs=184.4
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++. ..|+||++++||+++|+||||||||||+++|+|+.+ +++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~~--------------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 65 (232)
T PRK10771 2 LKLTDITWLYHHL--------------PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHTT 65 (232)
T ss_pred eEEEEEEEEECCc--------------cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecCc
Confidence 7899999999531 238999999999999999999999999999999875 468999999998753
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 128 S-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 128 ~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
. ..++.++|++|++.+++.+||.||+.+...... .. .+...+++.++++.+||++..++.+. .||||||||
T Consensus 66 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 137 (232)
T PRK10771 66 TPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLPG-----QLSGGQRQR 137 (232)
T ss_pred CChhhccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCcc-----cCCHHHHHH
Confidence 2 124568999999999999999999987632110 11 22345678999999999887777765 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA 285 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 285 (820)
++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++.. +.++||++++|++|++++.|++++
T Consensus 138 v~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~g~i~~~g~~~~ 216 (232)
T PRK10771 138 VALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLED-AARIAPRSLVVADGRIAWDGPTDE 216 (232)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999764 8999999999984 778899999999999999998776
Q ss_pred hh
Q 003437 286 LP 287 (820)
Q Consensus 286 ~~ 287 (820)
+.
T Consensus 217 ~~ 218 (232)
T PRK10771 217 LL 218 (232)
T ss_pred HH
Confidence 64
No 163
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-40 Score=348.99 Aligned_cols=217 Identities=30% Similarity=0.492 Sum_probs=188.9
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|+. +.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~ 66 (232)
T cd03300 1 IELENVSKFYGG------------FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDITN 66 (232)
T ss_pred CEEEeEEEEeCC------------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCc
Confidence 468999999853 2499999999999999999999999999999999999854 57999999998864
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 128 S-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 128 ~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
. ..++.++|++|++.+++.+||.||+.+....+ ..+.....++++++++.+||.+..++.+. .||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qr 138 (232)
T cd03300 67 LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKPS-----QLSGGQQQR 138 (232)
T ss_pred CChhhcceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHH
Confidence 2 23467899999999998899999998876543 12344456678899999999887777664 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA 285 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 285 (820)
++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++.. +.++||++++|++|++++.|+.++
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~-~~~~~d~i~~l~~G~~~~~~~~~~ 217 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEE-ALTMSDRIAVMNKGKIQQIGTPEE 217 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999999875 8999999999974 788999999999999999988765
Q ss_pred hh
Q 003437 286 LP 287 (820)
Q Consensus 286 ~~ 287 (820)
+.
T Consensus 218 ~~ 219 (232)
T cd03300 218 IY 219 (232)
T ss_pred HH
Confidence 53
No 164
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-40 Score=355.64 Aligned_cols=224 Identities=24% Similarity=0.328 Sum_probs=187.3
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC---CCCceEEEECC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ---GSLEGSVRIDG 122 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~---~~~~G~I~i~G 122 (820)
..|+++||+++|+. +.+|+|+|+++.+||+++|+|||||||||||++|+|++.+ .+++|+|.++|
T Consensus 19 ~~l~~~nl~~~~~~------------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 86 (267)
T PRK14237 19 IALSTKDLHVYYGK------------KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRG 86 (267)
T ss_pred eEEEEeeEEEEECC------------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECC
Confidence 35999999999853 3499999999999999999999999999999999999754 25789999999
Q ss_pred EeCCCc-----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 003437 123 KPVTTS-----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRR 197 (820)
Q Consensus 123 ~~~~~~-----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~ 197 (820)
.++... ..++.++|++|++.+++ .||+||+.++.... ....+++..+++.++++.++|.+..+... +..++
T Consensus 87 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~ 162 (267)
T PRK14237 87 IDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDL-HKSAL 162 (267)
T ss_pred EEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhh-cCCcc
Confidence 987421 23567899999998887 59999999875432 11234445677889999999964322222 23346
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.||||||||++|||+|+.+|++|||||||+|||+.++..+.++|+++++ +.|||++||+++. +.++||++++|++|++
T Consensus 163 ~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~-~~~~~d~i~~l~~G~i 240 (267)
T PRK14237 163 TLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQQ-AARASDYTAFFYLGDL 240 (267)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH-HHHhcCEEEEEECCEE
Confidence 7999999999999999999999999999999999999999999999964 7999999999984 7889999999999999
Q ss_pred EEEcCccchh
Q 003437 278 VYMGSPVALP 287 (820)
Q Consensus 278 v~~G~~~~~~ 287 (820)
++.|+++++.
T Consensus 241 ~~~g~~~~~~ 250 (267)
T PRK14237 241 IEYDKTRNIF 250 (267)
T ss_pred EEeCCHHHHh
Confidence 9999987763
No 165
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.4e-40 Score=350.22 Aligned_cols=217 Identities=29% Similarity=0.467 Sum_probs=189.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|++++|.. +.+|+|+|+++.+||+++|+||||||||||+++|+|+++ +.+|+|.++|.++..
T Consensus 1 i~i~~l~~~~~~------------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~ 66 (237)
T TIGR00968 1 IEIANISKRFGS------------FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATR 66 (237)
T ss_pred CEEEEEEEEECC------------eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCc
Confidence 478999999853 249999999999999999999999999999999999875 467999999998754
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 128 S-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 128 ~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
. ..++.++|++|++.+++.+|+.||+.+....+ ..+.....+.++++++.+++.+..++.++ .|||||+||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qr 138 (237)
T TIGR00968 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYPN-----QLSGGQRQR 138 (237)
T ss_pred CChhhcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChh-----hCCHHHHHH
Confidence 2 23467899999999999999999998876533 12334445678999999999877777664 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA 285 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 285 (820)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++. +.++||++++|++|++++.|+.++
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~-~~~~~d~i~~l~~g~i~~~~~~~~ 217 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEE-AMEVADRIVVMSNGKIEQIGSPDE 217 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHhhcCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999875 8999999999974 788999999999999999998776
Q ss_pred hh
Q 003437 286 LP 287 (820)
Q Consensus 286 ~~ 287 (820)
+.
T Consensus 218 ~~ 219 (237)
T TIGR00968 218 VY 219 (237)
T ss_pred HH
Confidence 64
No 166
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.2e-40 Score=356.77 Aligned_cols=228 Identities=22% Similarity=0.375 Sum_probs=188.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+.+.... ..+.+.+|+|+|+++++||+++|+|||||||||||++|+|+++ +.+|+|.++|.++.
T Consensus 4 ~l~~~~l~~~~~~~~~~~---~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 78 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWF---RRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPLH 78 (267)
T ss_pred eEEEeceEEEecCCCCcc---cccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECC
Confidence 499999999995321000 0012359999999999999999999999999999999999985 46899999999875
Q ss_pred Cc---cccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCC
Q 003437 127 TS---YMKMVSSYVMQDDQ--LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRRGVS 200 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LS 200 (820)
.. ..++.++|++|++. +++.+||.+++.+...... .....+..+++.++++.+||. +..++.+ ..||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 151 (267)
T PRK15112 79 FGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYP-----HMLA 151 (267)
T ss_pred CCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCc-----hhcC
Confidence 31 22356899999974 6788899999988655431 233445556789999999994 5556554 4699
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|+++. +..+||++++|++|++++
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~-~~~~~d~i~~l~~G~i~~ 230 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGM-MKHISDQVLVMHQGEVVE 230 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHH-HHHhcCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999874 8999999999974 788899999999999999
Q ss_pred EcCccchh
Q 003437 280 MGSPVALP 287 (820)
Q Consensus 280 ~G~~~~~~ 287 (820)
.|+++++.
T Consensus 231 ~~~~~~~~ 238 (267)
T PRK15112 231 RGSTADVL 238 (267)
T ss_pred cCCHHHHh
Confidence 99877654
No 167
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-40 Score=349.21 Aligned_cols=216 Identities=31% Similarity=0.540 Sum_probs=188.1
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|+++.|.+ ++|+|+|++|++||+++|+||||||||||+++|+|+++ +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~-------------~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~ 65 (235)
T cd03299 1 LKVENLSKDWKE-------------FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITN 65 (235)
T ss_pred CeeEeEEEEeCC-------------ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCc
Confidence 468999998842 27999999999999999999999999999999999875 468999999998764
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 128 S-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 128 ~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
. ..++.++|++|++.+++.+||.||+.+..... ..+..+..+.+.++++.+||.+..++.+. .||||||||
T Consensus 66 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 137 (235)
T cd03299 66 LPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKPE-----TLSGGEQQR 137 (235)
T ss_pred CChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCcc-----cCCHHHHHH
Confidence 2 23567899999999999999999998875432 23445556678899999999887777764 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA 285 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 285 (820)
|+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++.. +.++||++++|++|++++.|++++
T Consensus 138 l~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~-~~~~~d~i~~l~~G~i~~~~~~~~ 216 (235)
T cd03299 138 VAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEE-AWALADKVAIMLNGKLIQVGKPEE 216 (235)
T ss_pred HHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999765 9999999999974 778999999999999999998766
Q ss_pred hh
Q 003437 286 LP 287 (820)
Q Consensus 286 ~~ 287 (820)
+.
T Consensus 217 ~~ 218 (235)
T cd03299 217 VF 218 (235)
T ss_pred HH
Confidence 53
No 168
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.1e-41 Score=326.11 Aligned_cols=215 Identities=32% Similarity=0.520 Sum_probs=193.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.+.+++++.+|.++ ...+|+|||++|.+||.++++||||||||||||+++|+.+| ..|+|.+||++++
T Consensus 3 ~l~~~~~sl~y~g~----------~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P--~~G~i~l~~r~i~ 70 (259)
T COG4525 3 MLNVSHLSLSYEGK----------PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP--SRGSIQLNGRRIE 70 (259)
T ss_pred eeehhheEEecCCc----------chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc--ccceEEECCEecc
Confidence 47788999999754 24599999999999999999999999999999999999864 5799999999997
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
... ...|.|||++.|+|.+||.||+.|+.+++ ++++.++.+++.+.+..+||++..+++| .+||||||||
T Consensus 71 gPg--aergvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQR 140 (259)
T COG4525 71 GPG--AERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQR 140 (259)
T ss_pred CCC--ccceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHH
Confidence 532 23489999999999999999999999987 6889999999999999999999887776 4799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeC--CeEEEEcCc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLAR--GRLVYMGSP 283 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~--G~iv~~G~~ 283 (820)
|.|||||+.+|++|+||||+++||.-+++++.++|-++.+ .|+.++++||+.+. +.-+++++++|+. |+++..-++
T Consensus 141 vGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieE-AlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 141 VGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEE-ALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH-HHhhhheeEEecCCCceeeEecCC
Confidence 9999999999999999999999999999999999999875 69999999999985 5568999999995 799987777
Q ss_pred c
Q 003437 284 V 284 (820)
Q Consensus 284 ~ 284 (820)
+
T Consensus 220 d 220 (259)
T COG4525 220 D 220 (259)
T ss_pred C
Confidence 6
No 169
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-41 Score=334.21 Aligned_cols=219 Identities=32% Similarity=0.487 Sum_probs=188.4
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+.+||+++..+ +.+|++||++++|||+++|+||||||||||||.|+|.+. +.+|++.+||.+++.
T Consensus 2 i~a~nls~~~~G------------r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~~ 67 (259)
T COG4559 2 IRAENLSYSLAG------------RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLNS 67 (259)
T ss_pred eeeeeeEEEeec------------ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChhh
Confidence 789999999854 359999999999999999999999999999999999875 467999999999875
Q ss_pred c---cccceEEEEccCCCC-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 128 S---YMKMVSSYVMQDDQL-FPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 128 ~---~~~~~~gyv~Q~~~l-~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
. .+.+..+.+||+..+ || .||.|-+.++..-.. .+....+..+.++++|...++.+.+.+.+- .|||||
T Consensus 68 ~~~~~lA~~raVlpQ~s~laFp-Ftv~eVV~mGr~p~~-~g~~~~e~~~i~~~ala~~d~~~la~R~y~-----~LSGGE 140 (259)
T COG4559 68 WPPEELARHRAVLPQNSSLAFP-FTVQEVVQMGRIPHR-SGREPEEDERIAAQALAATDLSGLAGRDYR-----TLSGGE 140 (259)
T ss_pred CCHHHHHHHhhhcccCcccccc-eEHHHHHHhcccccc-cCCCchhhHHHHHHHHHHcChhhhhccchh-----hcCchH
Confidence 3 234556899999876 55 599999999864221 112233566678999999999988776653 699999
Q ss_pred HHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 204 RRRVSIGIDIIH------KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 204 rqRv~ia~aL~~------~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
||||.+||.|++ ++++||||||||+||...+..++++.++++++|..|+++.||.+. ...+||||++|++||+
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~Grv 219 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQGRV 219 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeCCeE
Confidence 999999999986 456999999999999999999999999999999999999999996 7789999999999999
Q ss_pred EEEcCccchhh
Q 003437 278 VYMGSPVALPA 288 (820)
Q Consensus 278 v~~G~~~~~~~ 288 (820)
+..|+|++++.
T Consensus 220 ~a~g~p~~vlt 230 (259)
T COG4559 220 IASGSPQDVLT 230 (259)
T ss_pred eecCCHHHhcC
Confidence 99999988863
No 170
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-40 Score=351.78 Aligned_cols=219 Identities=24% Similarity=0.408 Sum_probs=184.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC---CceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGS---LEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~---~~G~I~i~G~ 123 (820)
.|+++||++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+..+.+ ++|+|.++|+
T Consensus 3 ~l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14240 3 KISVKDLDLFYGD------------FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQ 70 (250)
T ss_pred eEEEEEEEEEECC------------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCE
Confidence 4899999999853 249999999999999999999999999999999999864322 5899999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS----ATHTYIGNE 194 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~ig~~ 194 (820)
++.. ...++.++|++|++.+++ +||.||+.+....+. ..+.++..++++++++.+++.+ ..++.+
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--- 144 (250)
T PRK14240 71 DIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKSA--- 144 (250)
T ss_pred EccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcCC---
Confidence 8753 123567899999998888 899999998754321 1123445677888999998753 234443
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.++||++++|++
T Consensus 145 --~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~ 220 (250)
T PRK14240 145 --LGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLN 220 (250)
T ss_pred --CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEEC
Confidence 57999999999999999999999999999999999999999999999964 799999999987 47889999999999
Q ss_pred CeEEEEcCccchh
Q 003437 275 GRLVYMGSPVALP 287 (820)
Q Consensus 275 G~iv~~G~~~~~~ 287 (820)
|+++..|+++++.
T Consensus 221 G~i~~~~~~~~~~ 233 (250)
T PRK14240 221 GEIVEFGDTVDLF 233 (250)
T ss_pred CEEEEeCCHHHHH
Confidence 9999999877653
No 171
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-40 Score=351.39 Aligned_cols=220 Identities=24% Similarity=0.368 Sum_probs=184.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC---CceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGS---LEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~---~~G~I~i~G~ 123 (820)
.|+++||++.|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|++.+.+ ++|+|.++|.
T Consensus 4 ~l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 71 (252)
T PRK14272 4 LLSAQDVNIYYGD------------KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQ 71 (252)
T ss_pred EEEEeeeEEEECC------------EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCE
Confidence 5899999999853 249999999999999999999999999999999999986533 4799999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR----SATHTYIGNE 194 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~ 194 (820)
++.. ...++.++|++|++.+++.+|+.||+.+...... ...+++..+.+.++++.+++. +..++.+
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--- 146 (252)
T PRK14272 72 DIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTPA--- 146 (252)
T ss_pred EcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCCc---
Confidence 8752 1235568999999999999999999987654321 112334456677788888764 2334444
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
+.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++. +.++||++++|++
T Consensus 147 --~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~~~~~d~i~~l~~ 222 (252)
T PRK14272 147 --TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMHQ-AARVSDTTSFFLV 222 (252)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHH-HHHhCCEEEEEEC
Confidence 57999999999999999999999999999999999999999999999965 7999999999984 7789999999999
Q ss_pred CeEEEEcCccchh
Q 003437 275 GRLVYMGSPVALP 287 (820)
Q Consensus 275 G~iv~~G~~~~~~ 287 (820)
|++++.|+++++.
T Consensus 223 G~i~~~~~~~~~~ 235 (252)
T PRK14272 223 GDLVEHGPTDQLF 235 (252)
T ss_pred CEEEEeCCHHHHH
Confidence 9999999987764
No 172
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.6e-40 Score=349.55 Aligned_cols=222 Identities=34% Similarity=0.473 Sum_probs=183.3
Q ss_pred EEEEEEEEECcccccc---------cccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEE
Q 003437 49 EFKNLSYSIMKKQKKD---------GVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVR 119 (820)
Q Consensus 49 ~~~nls~~~~~~~~~~---------~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~ 119 (820)
+++|+++.|....... .++....+.+|+|+||++++||+++|+|||||||||||++|+|+++ +++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~ 79 (236)
T cd03267 2 EVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVR 79 (236)
T ss_pred ceecchhhccCcCCccccchhHHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEE
Confidence 5677887776522110 0011234569999999999999999999999999999999999885 4689999
Q ss_pred ECCEeCCC--ccccceEEEEc-cCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 003437 120 IDGKPVTT--SYMKMVSSYVM-QDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGR 196 (820)
Q Consensus 120 i~G~~~~~--~~~~~~~gyv~-Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~ 196 (820)
++|+++.. ...++.++|++ |++.+++.+||+||+.+....+ ....++..+++.++++.+||.+..++.+.
T Consensus 80 ~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---- 152 (236)
T cd03267 80 VAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVR---- 152 (236)
T ss_pred ECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChh----
Confidence 99987642 22456789998 5567888899999998876543 23344556678899999999988887765
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ .+..+||++++|++|
T Consensus 153 -~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G 230 (236)
T cd03267 153 -QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKG 230 (236)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCC
Confidence 69999999999999999999999999999999999999999999999864 899999999997 478899999999999
Q ss_pred eEEEEc
Q 003437 276 RLVYMG 281 (820)
Q Consensus 276 ~iv~~G 281 (820)
++++.|
T Consensus 231 ~i~~~g 236 (236)
T cd03267 231 RLLYDG 236 (236)
T ss_pred EEEecC
Confidence 998764
No 173
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-40 Score=350.48 Aligned_cols=223 Identities=22% Similarity=0.396 Sum_probs=185.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G~ 123 (820)
.|+++||++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+..+. +++|+|.++|.
T Consensus 3 ~l~~~~l~~~~~~------------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 3 IIEIENFSAYYGE------------KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred eEEEEeeEEEeCC------------ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 4899999999853 24899999999999999999999999999999999987531 36899999999
Q ss_pred eCCCc-----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 124 PVTTS-----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 124 ~~~~~-----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
++... ..++.++|++|++.+++ .||+||+.+...... ....+..++.++++++.+|+.+..+... +..+.+
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~ 146 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSEL-NKPGTR 146 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHH-hCChhh
Confidence 87531 23567899999999888 799999998754321 1123344566888999999864321111 233457
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++. +..+||++++|++|+++
T Consensus 147 LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~-~~~~~d~i~~l~~G~i~ 224 (250)
T PRK14262 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQ-AIRIADYIAFMYRGELI 224 (250)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHH-HHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999975 7899999999974 77899999999999999
Q ss_pred EEcCccchh
Q 003437 279 YMGSPVALP 287 (820)
Q Consensus 279 ~~G~~~~~~ 287 (820)
..|+++++.
T Consensus 225 ~~g~~~~~~ 233 (250)
T PRK14262 225 EYGPTREIV 233 (250)
T ss_pred EecCHHHHH
Confidence 999887764
No 174
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-40 Score=351.24 Aligned_cols=222 Identities=22% Similarity=0.366 Sum_probs=183.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G~ 123 (820)
.|+++||++.|++ +.+|+|+|++|++||+++|+||||||||||+++|+|+.++. +++|+|.++|.
T Consensus 3 ~l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 70 (249)
T PRK14253 3 KFNIENLDLFYGE------------NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGE 70 (249)
T ss_pred eEEEeccEEEECC------------eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCE
Confidence 4899999999853 24999999999999999999999999999999999987642 36899999999
Q ss_pred eCCC----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 003437 124 PVTT----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 124 ~~~~----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~L 199 (820)
++.. ...++.++|++|++.+++ .||.||+.+...... ....+...+++.++++.+++.+...... +..+.+|
T Consensus 71 ~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~L 146 (249)
T PRK14253 71 DIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAFGL 146 (249)
T ss_pred EcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHh-hcCcccC
Confidence 8742 134567899999999887 799999988754321 1123344567888899998854221111 1234579
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
||||||||+||++|+.+|++|||||||+|||+.++..+.++|+++++ ++|||++||++.. +..+||++++|++|+++.
T Consensus 147 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~~~~d~i~~l~~G~i~~ 224 (249)
T PRK14253 147 SGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQ-ARRISDRTAFFLMGELVE 224 (249)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHH-HHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999976 5899999999974 788999999999999999
Q ss_pred EcCccch
Q 003437 280 MGSPVAL 286 (820)
Q Consensus 280 ~G~~~~~ 286 (820)
.|+++++
T Consensus 225 ~g~~~~~ 231 (249)
T PRK14253 225 HDDTQVI 231 (249)
T ss_pred eCCHHHH
Confidence 9987665
No 175
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-40 Score=356.69 Aligned_cols=220 Identities=30% Similarity=0.415 Sum_probs=189.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++.. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++ +.+|+|.++|+++.
T Consensus 4 ~l~~~~l~~~~~~~~---------~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~ 72 (277)
T PRK13642 4 ILEVENLVFKYEKES---------DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLT 72 (277)
T ss_pred eEEEEEEEEEcCCCC---------cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEECC
Confidence 499999999996321 1349999999999999999999999999999999999985 46899999999875
Q ss_pred Cc---cccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 TS---YMKMVSSYVMQDDQ-LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
.. ..++.++|++|++. .++..||.||+.+..... ...+++..++++++++.+||.+..++.+. .||||
T Consensus 73 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 144 (277)
T PRK13642 73 AENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREPA-----RLSGG 144 (277)
T ss_pred cCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----cCCHH
Confidence 32 24567899999974 566789999998865432 23455556788999999999887777654 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++. +. .||++++|++|+++..|
T Consensus 145 ~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~~-~~d~i~~l~~G~i~~~g 222 (277)
T PRK13642 145 QKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-AA-SSDRILVMKAGEIIKEA 222 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HH-hCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999875 9999999999985 54 59999999999999999
Q ss_pred Cccchh
Q 003437 282 SPVALP 287 (820)
Q Consensus 282 ~~~~~~ 287 (820)
+++++.
T Consensus 223 ~~~~~~ 228 (277)
T PRK13642 223 APSELF 228 (277)
T ss_pred CHHHHh
Confidence 987764
No 176
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1e-40 Score=376.16 Aligned_cols=234 Identities=30% Similarity=0.399 Sum_probs=196.8
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...|+++||++.|..+.... ....+...+++||||++.+||++||+|+||||||||.|+|+|+.+| .+|+|.++|.+
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~-~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~ 354 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLF-VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQD 354 (539)
T ss_pred CceeEeeeeeeeeccccccc-cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcc
Confidence 45699999999997532111 1112346799999999999999999999999999999999999865 68999999987
Q ss_pred CCC-----ccccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 003437 125 VTT-----SYMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRR 197 (820)
Q Consensus 125 ~~~-----~~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~ 197 (820)
++. ...++.+-+||||+ .|.|.+||+++|......... ....+.++++.++++.+||... +.+++|.
T Consensus 355 ~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~----~l~ryP~ 428 (539)
T COG1123 355 LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPE----FLDRYPH 428 (539)
T ss_pred cccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHH----HHhcCch
Confidence 321 12345677899987 589999999999998876533 2356677899999999999852 2234556
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
+||||||||++|||||+.+|++|++|||||.||+..+.+|+++|+++.++ |.|.|++|||... +..+||||++|++|+
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~v-V~~i~drv~vm~~G~ 507 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAV-VRYIADRVAVMYDGR 507 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH-HHhhCceEEEEECCe
Confidence 89999999999999999999999999999999999999999999999875 9999999999985 899999999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
||+.|+.+++.+
T Consensus 508 iVE~G~~~~v~~ 519 (539)
T COG1123 508 IVEEGPTEKVFE 519 (539)
T ss_pred EEEeCCHHHHhc
Confidence 999998877753
No 177
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=3.4e-40 Score=351.59 Aligned_cols=219 Identities=23% Similarity=0.342 Sum_probs=184.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe--
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP-- 124 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~-- 124 (820)
.|+++||++.|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++ +++|+|.++|++
T Consensus 6 ~l~~~~l~~~~~~------------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 71 (258)
T PRK11701 6 LLSVRGLTKLYGP------------RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDGQ 71 (258)
T ss_pred eEEEeeeEEEcCC------------ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCcccc
Confidence 5999999999853 249999999999999999999999999999999999885 468999999987
Q ss_pred ---CCCcc-------ccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccc
Q 003437 125 ---VTTSY-------MKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHTYI 191 (820)
Q Consensus 125 ---~~~~~-------~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~i 191 (820)
+.... .++.++|++|++ .+++.+|+.||+.+...... .....+..+++.++++.+++.+ ..++.+
T Consensus 72 ~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 149 (258)
T PRK11701 72 LRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDLP 149 (258)
T ss_pred ccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCCC
Confidence 54211 234689999997 36778899999976543211 1122344567889999999974 556555
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEE
Q 003437 192 GNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRII 270 (820)
Q Consensus 192 g~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 270 (820)
..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++.. +..+||+++
T Consensus 150 -----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~-~~~~~d~i~ 223 (258)
T PRK11701 150 -----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV-ARLLAHRLL 223 (258)
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH-HHHhcCEEE
Confidence 469999999999999999999999999999999999999999999999765 8999999999975 777899999
Q ss_pred EEeCCeEEEEcCccchh
Q 003437 271 VLARGRLVYMGSPVALP 287 (820)
Q Consensus 271 lL~~G~iv~~G~~~~~~ 287 (820)
+|++|++++.|+++++.
T Consensus 224 ~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 224 VMKQGRVVESGLTDQVL 240 (258)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999887664
No 178
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-40 Score=340.35 Aligned_cols=196 Identities=35% Similarity=0.594 Sum_probs=166.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCceEEEECCEeC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG-SLEGSVRIDGKPV 125 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~-~~~G~I~i~G~~~ 125 (820)
.+.|+||+|.|+.+. .++.+|+++||++++||+++|+||||||||||+++|+|+.++. +++|+|.++|.++
T Consensus 3 ~~~~~~~~~~~~~~~--------~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~ 74 (202)
T cd03233 3 TLSWRNISFTTGKGR--------SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPY 74 (202)
T ss_pred eEEEEccEEEeccCC--------CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEEC
Confidence 489999999997642 2356999999999999999999999999999999999998632 5789999999987
Q ss_pred CCc--cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 126 TTS--YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 126 ~~~--~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
... ..++.++|++|++.+++.+||+||+.+..... .++.+ ..|||||
T Consensus 75 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~~-----~~LS~Ge 123 (202)
T cd03233 75 KEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEFV-----RGISGGE 123 (202)
T ss_pred ccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccch-----hhCCHHH
Confidence 542 34567899999999999999999998764210 22333 4699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ +.|+|+++|+...++.++||++++|++|++++.|
T Consensus 124 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 124 RKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999875 6787777776544578899999999999998764
No 179
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.7e-40 Score=386.19 Aligned_cols=220 Identities=25% Similarity=0.343 Sum_probs=191.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||||+|+|+++ +++|+|.++|.++.
T Consensus 4 ~i~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 69 (501)
T PRK10762 4 LLQLKGIDKAFPG------------VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEVT 69 (501)
T ss_pred eEEEeeeEEEeCC------------eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 4999999999953 249999999999999999999999999999999999985 46899999999875
Q ss_pred Cc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 127 TS----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 127 ~~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
.. ..++.++||+|++.+++.+||+||+.++...+.. ...+.++.++++.++++.+||.+..++.++ .|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 144 (501)
T PRK10762 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG-----ELSI 144 (501)
T ss_pred CCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCCH
Confidence 31 1245689999999999999999999987532210 112344455678999999999988877775 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
||||||+||+||+.+|++|||||||+|||+.++..+.++|++++++|.|||++|||++. +..+||++++|++|+++..|
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~-~~~~~d~i~~l~~G~i~~~~ 223 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKE-IFEICDDVTVFRDGQFIAER 223 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999999998789999999999974 78899999999999999999
Q ss_pred Cccch
Q 003437 282 SPVAL 286 (820)
Q Consensus 282 ~~~~~ 286 (820)
+++++
T Consensus 224 ~~~~~ 228 (501)
T PRK10762 224 EVADL 228 (501)
T ss_pred CcCcC
Confidence 88765
No 180
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-40 Score=352.91 Aligned_cols=220 Identities=26% Similarity=0.368 Sum_probs=183.5
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--C-CCCceEEEECC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIA--Q-GSLEGSVRIDG 122 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~--~-~~~~G~I~i~G 122 (820)
..|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+.. + .+++|+|.++|
T Consensus 20 ~~l~~~~l~~~~~~------------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 20 HILEVKDLSIYYGE------------KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred ceEEEEEEEEEeCC------------ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 45999999999953 249999999999999999999999999999999999753 2 24789999999
Q ss_pred EeCCCc-----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 003437 123 KPVTTS-----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS----ATHTYIGN 193 (820)
Q Consensus 123 ~~~~~~-----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~ig~ 193 (820)
+++... ..++.++|++|++.+++. ||.||+.+...... ........+.+.++++.+++.+ ..++.+
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 162 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSSA-- 162 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcCc--
Confidence 987531 235678999999988885 99999988754321 1122334556788899998853 234444
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 194 EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 194 ~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++. +.++||++++|+
T Consensus 163 ---~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~-~~~~~d~v~~l~ 237 (268)
T PRK14248 163 ---LSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQ-ALRVSDRTAFFL 237 (268)
T ss_pred ---ccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHH-HHHhCCEEEEEE
Confidence 47999999999999999999999999999999999999999999999965 6899999999974 788999999999
Q ss_pred CCeEEEEcCccchh
Q 003437 274 RGRLVYMGSPVALP 287 (820)
Q Consensus 274 ~G~iv~~G~~~~~~ 287 (820)
+|++++.|+++++.
T Consensus 238 ~G~i~~~~~~~~~~ 251 (268)
T PRK14248 238 NGDLVEYDQTEQIF 251 (268)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999887653
No 181
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-40 Score=356.86 Aligned_cols=222 Identities=27% Similarity=0.406 Sum_probs=184.9
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC------CceEEEEC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGS------LEGSVRID 121 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~------~~G~I~i~ 121 (820)
|+++||+++|.+ +.+|+|+||+|++||+++|+||||||||||+|+|+|++++.. .+|+|.++
T Consensus 2 l~~~nl~~~~~~------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~ 69 (272)
T PRK13547 2 LTADHLHVARRH------------RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLN 69 (272)
T ss_pred eEEEEEEEEECC------------EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEEC
Confidence 889999999853 249999999999999999999999999999999999985420 27999999
Q ss_pred CEeCCCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 003437 122 GKPVTTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRL-PPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRR 197 (820)
Q Consensus 122 G~~~~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~ 197 (820)
|.++... ..++.++|++|++.+++.+||+||+.+...... .......+..+++.++++.+||.+..++.+.
T Consensus 70 g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 144 (272)
T PRK13547 70 GEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVT----- 144 (272)
T ss_pred CEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcc-----
Confidence 9987531 234567999999876666899999987632110 0011113345678899999999877776654
Q ss_pred CCChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcC
Q 003437 198 GVSGGERRRVSIGIDII---------HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLD 267 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~---------~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D 267 (820)
.|||||||||+||++|+ .+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|+++. +.++||
T Consensus 145 ~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~-~~~~~d 223 (272)
T PRK13547 145 TLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNL-AARHAD 223 (272)
T ss_pred cCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHHhCC
Confidence 69999999999999999 599999999999999999999999999999876 8999999999974 778999
Q ss_pred EEEEEeCCeEEEEcCccchh
Q 003437 268 RIIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 268 ~v~lL~~G~iv~~G~~~~~~ 287 (820)
++++|++|++++.|+++++.
T Consensus 224 ~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 224 RIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred EEEEEECCeEEEecCHHHHc
Confidence 99999999999999877653
No 182
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-40 Score=354.61 Aligned_cols=224 Identities=23% Similarity=0.380 Sum_probs=187.7
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDG 122 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G 122 (820)
..|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|++++. +.+|+|.++|
T Consensus 20 ~~l~i~nl~~~~~~------------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 20 PAMAAVNLTLGFAG------------KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred cEEEEeeEEEEECC------------EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 36999999999953 24999999999999999999999999999999999998642 4689999999
Q ss_pred EeCCCc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 123 KPVTTS----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 123 ~~~~~~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
.++... ..++.++|++|++.+++ .||+||+.+...... ..+.++..+++.++++.+||.+..++.. +..+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRL-SDSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHh-hCCccc
Confidence 987531 24567899999998888 799999988754321 1244455567788999999975332221 123457
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|+++. +.++||++++|++|+++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~-~~~~~dri~~l~~G~i~ 241 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQ-AARISDRAALFFDGRLV 241 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999976 5899999999974 78899999999999999
Q ss_pred EEcCccchh
Q 003437 279 YMGSPVALP 287 (820)
Q Consensus 279 ~~G~~~~~~ 287 (820)
..|+++++.
T Consensus 242 ~~g~~~~~~ 250 (276)
T PRK14271 242 EEGPTEQLF 250 (276)
T ss_pred EeCCHHHHH
Confidence 999987764
No 183
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-40 Score=349.92 Aligned_cols=224 Identities=23% Similarity=0.405 Sum_probs=183.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC--C-CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ--G-SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~--~-~~~G~I~i~G~ 123 (820)
.-+++||++.|++ +.+|+|+||+|.+||+++|+||||||||||+++|+|+..+ . +++|+|.++|+
T Consensus 5 ~~~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 72 (251)
T PRK14244 5 HASVKNLNLWYGS------------KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGI 72 (251)
T ss_pred EEEeeeEEEEECC------------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCE
Confidence 3578999999853 2499999999999999999999999999999999998752 1 36899999999
Q ss_pred eCCCc-----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 124 PVTTS-----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 124 ~~~~~-----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
++... ..++.++|++|++.+++. ||.||+.+....+. ......+..+.+.++++.+||.+...+.+ +..+..
T Consensus 73 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~ 149 (251)
T PRK14244 73 DVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRL-KDSAFE 149 (251)
T ss_pred ehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHh-hcChhh
Confidence 87421 235678999999988886 99999988754321 11123344567889999999965321111 123457
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.+ |+|||+++|+++. +.++||++++|++|+++
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~-~~~~~d~i~~l~~G~i~ 227 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMKQ-AKKVSDRVAFFQSGRIV 227 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHH-HHhhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999964 8999999999984 77889999999999999
Q ss_pred EEcCccchh
Q 003437 279 YMGSPVALP 287 (820)
Q Consensus 279 ~~G~~~~~~ 287 (820)
+.|+++++.
T Consensus 228 ~~~~~~~~~ 236 (251)
T PRK14244 228 EYNTTQEIF 236 (251)
T ss_pred EeCCHHHHh
Confidence 999877653
No 184
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-40 Score=349.04 Aligned_cols=223 Identities=24% Similarity=0.362 Sum_probs=184.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G~ 123 (820)
.|+++||+++|.+ +.+|+|+|++|.+||+++|+||||||||||+++|+|++++. +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~~------------~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 71 (251)
T PRK14249 4 KIKIRGVNFFYHK------------HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNE 71 (251)
T ss_pred eEEEEEEEEEECC------------eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCE
Confidence 4999999999853 24999999999999999999999999999999999998642 23699999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
++.. ...++.++|++|++.+++. ||+||+.+....+.. ...++..++++++++.++|.+...... +..+..
T Consensus 72 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~ 147 (251)
T PRK14249 72 NIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNL-HKSGLA 147 (251)
T ss_pred EccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHh-hCCccc
Confidence 8742 1235679999999998885 999999987643211 112233456788888888754221111 233457
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.++|+++. ++.|||+++|+++. +.++||++++|++|+++
T Consensus 148 LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~-~~~~~d~i~~l~~G~i~ 225 (251)
T PRK14249 148 LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQ-AARASDWTGFLLTGDLV 225 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH-HHhhCCEEEEEeCCeEE
Confidence 99999999999999999999999999999999999999999999995 58999999999985 77889999999999999
Q ss_pred EEcCccchh
Q 003437 279 YMGSPVALP 287 (820)
Q Consensus 279 ~~G~~~~~~ 287 (820)
+.|+++++.
T Consensus 226 ~~~~~~~~~ 234 (251)
T PRK14249 226 EYGRTGEIF 234 (251)
T ss_pred EeCCHHHHH
Confidence 999887663
No 185
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-41 Score=327.59 Aligned_cols=219 Identities=27% Similarity=0.452 Sum_probs=194.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||.++|+. ..+|++||++.+.|+++.|||.|||||||+|+||.-+.. |..|.|.+||+.+.
T Consensus 6 ~l~v~dlHK~~G~------------~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~ 71 (256)
T COG4598 6 ALEVEDLHKRYGE------------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIR 71 (256)
T ss_pred ceehhHHHhhccc------------chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEE
Confidence 4899999999854 459999999999999999999999999999999998764 56899999999874
Q ss_pred Cc----------------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 003437 127 TS----------------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTY 190 (820)
Q Consensus 127 ~~----------------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 190 (820)
.. ..|...|+|||+.+|++++||.||+.-+...- .+.++.+..++++.+|..+||.+..|.+
T Consensus 72 ~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~Y 149 (256)
T COG4598 72 LKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKADAY 149 (256)
T ss_pred eeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhhcC
Confidence 11 12344689999999999999999997654321 1467888999999999999999988866
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEE
Q 003437 191 IGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRII 270 (820)
Q Consensus 191 ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 270 (820)
.. .|||||+||++|||||+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||.+.. +.+...+|+
T Consensus 150 P~-----~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~ 223 (256)
T COG4598 150 PA-----HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVI 223 (256)
T ss_pred cc-----ccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheE
Confidence 54 699999999999999999999999999999999999999999999999999999999999986 788899999
Q ss_pred EEeCCeEEEEcCccchh
Q 003437 271 VLARGRLVYMGSPVALP 287 (820)
Q Consensus 271 lL~~G~iv~~G~~~~~~ 287 (820)
+|++|.|-++|+|+++.
T Consensus 224 fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 224 FLHQGKIEEEGPPEQVF 240 (256)
T ss_pred EeecceecccCChHHHh
Confidence 99999999999999875
No 186
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-40 Score=386.35 Aligned_cols=221 Identities=20% Similarity=0.311 Sum_probs=190.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||||+|+|+++ +++|+|.++|+++.
T Consensus 5 ~l~~~~l~~~~~~------------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~ 70 (510)
T PRK09700 5 YISMAGIGKSFGP------------VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINYN 70 (510)
T ss_pred eEEEeeeEEEcCC------------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEECC
Confidence 5999999999953 249999999999999999999999999999999999985 46899999999875
Q ss_pred Ccc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcC-CCC---CCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 127 TSY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRL-PPS---ISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 127 ~~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~-~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
... .++.++||+|++.+++.+||+||+.++..... ... .+.++..+++.++++.+||.+..++.++ +
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 145 (510)
T PRK09700 71 KLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA-----N 145 (510)
T ss_pred CCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchh-----h
Confidence 421 23568999999999999999999987542110 001 1234456788999999999987787775 6
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
|||||||||+||++|+.+|++|||||||+|||+.++..++++|++++++|+|||++||+++. +..+||++++|++|+++
T Consensus 146 LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~-~~~~~d~v~~l~~G~i~ 224 (510)
T PRK09700 146 LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAE-IRRICDRYTVMKDGSSV 224 (510)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEECCEEe
Confidence 99999999999999999999999999999999999999999999998889999999999974 77899999999999999
Q ss_pred EEcCccchh
Q 003437 279 YMGSPVALP 287 (820)
Q Consensus 279 ~~G~~~~~~ 287 (820)
+.|+++++.
T Consensus 225 ~~g~~~~~~ 233 (510)
T PRK09700 225 CSGMVSDVS 233 (510)
T ss_pred eecchhhCC
Confidence 999987753
No 187
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-40 Score=348.93 Aligned_cols=223 Identities=21% Similarity=0.336 Sum_probs=184.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC---CceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGS---LEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~---~~G~I~i~G~ 123 (820)
.|+++||++.|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+..+.+ ++|+|.++|+
T Consensus 6 ~i~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 73 (253)
T PRK14261 6 ILSTKNLNLWYGE------------KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGE 73 (253)
T ss_pred eEEEeeeEEEECC------------eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 5999999999853 249999999999999999999999999999999999864322 4899999999
Q ss_pred eCCCc-----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 124 PVTTS-----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 124 ~~~~~-----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
++... ..++.++|++|++.+++. ||+||+.+....+. .....+.++.+.++++.+++.+...... +..++.
T Consensus 74 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~ 149 (253)
T PRK14261 74 NIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRL-HDSALS 149 (253)
T ss_pred EccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHh-hcChhh
Confidence 87531 235668999999998885 99999998765431 1123344567888899998853211111 223457
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++.. +.++||++++|++|+++
T Consensus 150 LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~-~~~~~d~v~~l~~G~i~ 227 (253)
T PRK14261 150 LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQ-AARVSDYTGFMYLGKLI 227 (253)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHH-HHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999976 5899999999975 77899999999999999
Q ss_pred EEcCccchh
Q 003437 279 YMGSPVALP 287 (820)
Q Consensus 279 ~~G~~~~~~ 287 (820)
..|+++++.
T Consensus 228 ~~g~~~~~~ 236 (253)
T PRK14261 228 EFDKTTQIF 236 (253)
T ss_pred EcCCHHHHH
Confidence 999987663
No 188
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=4.5e-40 Score=349.88 Aligned_cols=217 Identities=25% Similarity=0.402 Sum_probs=182.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceEEEECCEe
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG--SLEGSVRIDGKP 124 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~--~~~G~I~i~G~~ 124 (820)
.|+++||+++| + +.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +++|+|.++|++
T Consensus 4 ~l~~~~l~~~~-~------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~ 70 (254)
T PRK10418 4 QIELRNIALQA-A------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKP 70 (254)
T ss_pred EEEEeCeEEEe-c------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCee
Confidence 59999999998 2 14899999999999999999999999999999999998541 168999999998
Q ss_pred CCCccc-cceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCCCCCC
Q 003437 125 VTTSYM-KMVSSYVMQDDQ--LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS---ATHTYIGNEGRRG 198 (820)
Q Consensus 125 ~~~~~~-~~~~gyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~ig~~~~~~ 198 (820)
+..... ++.++||+|++. +.+.+|+.+++.+.+... .... ..+++.++++.+||.+ ..++.+ ..
T Consensus 71 i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~-----~~ 140 (254)
T PRK10418 71 VAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL---GKPA--DDATLTAALEAVGLENAARVLKLYP-----FE 140 (254)
T ss_pred ccccccccceEEEEecCCccccCccccHHHHHHHHHHHc---CCCh--HHHHHHHHHHHcCCCChhhhhhcCC-----cc
Confidence 854322 356899999974 456679999987754332 1122 2367889999999976 345544 47
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|+++. +.++||++++|++|++
T Consensus 141 LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~-~~~~~d~v~~l~~G~i 219 (254)
T PRK10418 141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGV-VARLADDVAVMSHGRI 219 (254)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH-HHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999764 8999999999985 7788999999999999
Q ss_pred EEEcCccchh
Q 003437 278 VYMGSPVALP 287 (820)
Q Consensus 278 v~~G~~~~~~ 287 (820)
++.|+++++.
T Consensus 220 ~~~~~~~~~~ 229 (254)
T PRK10418 220 VEQGDVETLF 229 (254)
T ss_pred EEecCHHHHh
Confidence 9999987764
No 189
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-40 Score=341.82 Aligned_cols=205 Identities=34% Similarity=0.503 Sum_probs=176.2
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
+++ ||+++|+++ .+ |+|+++++ |+++|+||||||||||+++|+|+++ +++|+|.++|.++..
T Consensus 2 ~~~-~l~~~~~~~------------~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 63 (214)
T cd03297 2 LCV-DIEKRLPDF------------TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFD 63 (214)
T ss_pred cee-eeeEecCCe------------ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeccc
Confidence 345 899998642 24 99999999 9999999999999999999999985 468999999998742
Q ss_pred c-------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 003437 128 S-------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS 200 (820)
Q Consensus 128 ~-------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS 200 (820)
. ..++.++|++|++.+++.+|++||+.+..... .....++++.++++.+||.+..++.+. .||
T Consensus 64 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 133 (214)
T cd03297 64 SRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYPA-----QLS 133 (214)
T ss_pred ccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCcc-----cCC
Confidence 1 23457899999999999999999998865321 233445678899999999877776654 699
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +..+||++++|++|+++.
T Consensus 134 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 134 GGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSE-AEYLADRIVVMEDGRLQY 212 (214)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHH-HHHhcCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999875 8999999999974 778999999999999987
Q ss_pred Ec
Q 003437 280 MG 281 (820)
Q Consensus 280 ~G 281 (820)
.|
T Consensus 213 ~g 214 (214)
T cd03297 213 IG 214 (214)
T ss_pred cC
Confidence 65
No 190
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.1e-39 Score=346.50 Aligned_cols=222 Identities=26% Similarity=0.355 Sum_probs=183.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|++ +.+|+|+|+++++||+++|+|+||||||||+++|+|+....+++|+|.++|.++.
T Consensus 7 ~l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~ 74 (252)
T CHL00131 7 ILEIKNLHASVNE------------NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESIL 74 (252)
T ss_pred eEEEEeEEEEeCC------------EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcc
Confidence 5999999999853 2499999999999999999999999999999999997322357899999999875
Q ss_pred Cc---cccc-eEEEEccCCCCCCCCCHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 003437 127 TS---YMKM-VSSYVMQDDQLFPMLTVFETFMFAAEVRLP----PSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRR 197 (820)
Q Consensus 127 ~~---~~~~-~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~ 197 (820)
.. ..++ .++|++|++.+++.+|+.+++.+....... ......+..+++.++++.+||. +..++.++ .
T Consensus 75 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 150 (252)
T CHL00131 75 DLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN----E 150 (252)
T ss_pred cCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----c
Confidence 32 1222 478999999999999999999876432110 0112223456788999999997 35555553 2
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhh-cCEEEEEeCCe
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQML-LDRIIVLARGR 276 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~lL~~G~ 276 (820)
+|||||||||+||++|+.+|++|||||||+|||+.++..+.++|++++++|+|||++||+++. +..+ ||++++|++|+
T Consensus 151 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~~G~ 229 (252)
T CHL00131 151 GFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQNGK 229 (252)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEeCCE
Confidence 499999999999999999999999999999999999999999999998779999999999875 5555 89999999999
Q ss_pred EEEEcCccc
Q 003437 277 LVYMGSPVA 285 (820)
Q Consensus 277 iv~~G~~~~ 285 (820)
+++.|+++.
T Consensus 230 i~~~~~~~~ 238 (252)
T CHL00131 230 IIKTGDAEL 238 (252)
T ss_pred EEEecChhh
Confidence 999998873
No 191
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3.5e-40 Score=384.08 Aligned_cols=214 Identities=26% Similarity=0.412 Sum_probs=188.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||||+|+|+++ +++|+|.++|+++.
T Consensus 11 ~l~~~~l~~~~~~------------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 76 (510)
T PRK15439 11 LLCARSISKQYSG------------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPCA 76 (510)
T ss_pred eEEEEeEEEEeCC------------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5999999999953 249999999999999999999999999999999999985 46899999999875
Q ss_pred Ccc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 TSY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
... .++.++||+|++.+++.+||+||+.+.... ..+.++++.++++.+||.+..++.++ .||||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 144 (510)
T PRK15439 77 RLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSAG-----SLEVA 144 (510)
T ss_pred CCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCChh-----hCCHH
Confidence 321 234589999999999999999999885321 12345678899999999887777765 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||+||++|+.+|++|||||||+|||+.++..+.++|++++++|+|||++||+++. +..+||++++|++|++++.|+
T Consensus 145 ~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~-~~~~~d~i~~l~~G~i~~~g~ 223 (510)
T PRK15439 145 DRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPE-IRQLADRISVMRDGTIALSGK 223 (510)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999999999998889999999999975 778999999999999999998
Q ss_pred ccchh
Q 003437 283 PVALP 287 (820)
Q Consensus 283 ~~~~~ 287 (820)
++++.
T Consensus 224 ~~~~~ 228 (510)
T PRK15439 224 TADLS 228 (510)
T ss_pred hHHcC
Confidence 87654
No 192
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-40 Score=350.35 Aligned_cols=219 Identities=24% Similarity=0.403 Sum_probs=184.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-C--CceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG-S--LEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~-~--~~G~I~i~G~ 123 (820)
.|+++||++.|++ +.+|+|+|+++++||+++|+|+||||||||+|+|+|++++. + ++|+|.++|+
T Consensus 7 ~l~~~~l~~~~~~------------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~ 74 (259)
T PRK14260 7 AIKVKDLSFYYNT------------SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQ 74 (259)
T ss_pred eEEEEEEEEEECC------------eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCE
Confidence 4999999999853 24999999999999999999999999999999999987643 2 5899999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS----ATHTYIGNE 194 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~ig~~ 194 (820)
++.. ...++.++|++|++.+++ +||+||+.+....+. ..++.+..+++.++++.+|+.+ ..++.
T Consensus 75 ~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~---- 147 (259)
T PRK14260 75 NIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS---- 147 (259)
T ss_pred eccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC----
Confidence 8742 123457899999999888 799999988754331 1233444567888999999843 33333
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe-
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA- 273 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~- 273 (820)
+..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++. +.++||++++|+
T Consensus 148 -~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~-i~~~~d~i~~l~~ 224 (259)
T PRK14260 148 -ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQ-ATRVSDFTAFFST 224 (259)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HHHhcCeEEEEec
Confidence 457999999999999999999999999999999999999999999999975 6999999999985 888999999998
Q ss_pred ----CCeEEEEcCccchh
Q 003437 274 ----RGRLVYMGSPVALP 287 (820)
Q Consensus 274 ----~G~iv~~G~~~~~~ 287 (820)
+|++++.|+++++.
T Consensus 225 ~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 225 DESRIGQMVEFGVTTQIF 242 (259)
T ss_pred cCCCCceEEEeCCHHHHh
Confidence 59999999988763
No 193
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-40 Score=349.95 Aligned_cols=225 Identities=24% Similarity=0.374 Sum_probs=186.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G~ 123 (820)
.|+++||+++|.+ ..+|+|+||++++||+++|+|+||||||||+++|+|+.++. ..+|+|.++|+
T Consensus 7 ~l~~~nl~~~~~~------------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~ 74 (261)
T PRK14258 7 AIKVNNLSFYYDT------------QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQ 74 (261)
T ss_pred eEEEeeEEEEeCC------------eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCE
Confidence 4999999999853 24899999999999999999999999999999999998642 14799999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
++.. ...++.++|++|++.+++ +||.||+.+...... ..+..+..+++.++++.+++.+..+... +..+..
T Consensus 75 ~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~ 150 (261)
T PRK14258 75 NIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKI-HKSALD 150 (261)
T ss_pred EhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHh-cCCccc
Confidence 8631 123566899999998888 799999988654321 1133344567889999999854322111 223457
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeC---
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLAR--- 274 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~--- 274 (820)
||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||++.. +.++||++++|++
T Consensus 151 LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~-i~~~~d~i~~l~~~~~ 229 (261)
T PRK14258 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQ-VSRLSDFTAFFKGNEN 229 (261)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHH-HHHhcCEEEEEccCCC
Confidence 999999999999999999999999999999999999999999999975 58999999999974 8889999999999
Q ss_pred --CeEEEEcCccchhh
Q 003437 275 --GRLVYMGSPVALPA 288 (820)
Q Consensus 275 --G~iv~~G~~~~~~~ 288 (820)
|++++.|+++++..
T Consensus 230 ~~G~i~~~~~~~~~~~ 245 (261)
T PRK14258 230 RIGQLVEFGLTKKIFN 245 (261)
T ss_pred cCceEEEeCCHHHHHh
Confidence 99999999988743
No 194
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-40 Score=347.92 Aligned_cols=219 Identities=25% Similarity=0.395 Sum_probs=183.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC--C-CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ--G-SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~--~-~~~G~I~i~G~ 123 (820)
.|+++||+++|+. +.+|+++|++|++||+++|+||||||||||+|+|+|++.+ . +.+|+|.++|+
T Consensus 4 ~l~~~~l~~~~~~------------~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~ 71 (251)
T PRK14251 4 IISAKDVHLSYGN------------YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQ 71 (251)
T ss_pred eEEEEeeEEEECC------------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCE
Confidence 4899999999953 2499999999999999999999999999999999999752 1 36899999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS----ATHTYIGNE 194 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~ig~~ 194 (820)
++.. ...++.++|++|++.+++ .||+||+.+...... ....+...++++++++.+++.. ..++.
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 144 (251)
T PRK14251 72 NIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRN---- 144 (251)
T ss_pred EcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccC----
Confidence 8742 123566899999998886 699999988654321 1123334467888999999852 23433
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
+.+||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++. +.++||++++|++
T Consensus 145 -~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~-~~~~~d~i~~l~~ 221 (251)
T PRK14251 145 -AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQQ-AGRISDQTAFLMN 221 (251)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHHH-HHhhcCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999964 6899999999984 7888999999999
Q ss_pred CeEEEEcCccchh
Q 003437 275 GRLVYMGSPVALP 287 (820)
Q Consensus 275 G~iv~~G~~~~~~ 287 (820)
|+++..|+++++.
T Consensus 222 G~i~~~~~~~~~~ 234 (251)
T PRK14251 222 GDLIEAGPTEEMF 234 (251)
T ss_pred CEEEEeCCHHHHH
Confidence 9999999887653
No 195
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=3e-40 Score=346.11 Aligned_cols=201 Identities=31% Similarity=0.487 Sum_probs=173.8
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHH
Q 003437 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFM 154 (820)
Q Consensus 75 L~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~ 154 (820)
|+|+|++|++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++.... ...+|++|++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 578999999999999999999999999999999985 46899999999876422 22489999999999999999998
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 003437 155 FAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSA 234 (820)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~ 234 (820)
+......+ ...+.+..+++.++++.+||++..++.++ .|||||||||+||++|+.+|++|||||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRPG-----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 86431111 23445556678999999999887777665 6999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccch
Q 003437 235 YSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL 286 (820)
Q Consensus 235 ~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 286 (820)
..+.+.|++++++ |+|||++||+++. +.++||++++|++|+++..|+..++
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~~-~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVDE-ALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEEeCCcEecccCceec
Confidence 9999999999865 8999999999974 7889999999999999998876544
No 196
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-40 Score=354.28 Aligned_cols=221 Identities=22% Similarity=0.357 Sum_probs=184.5
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CC-CCceEEEEC
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIA--QG-SLEGSVRID 121 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~--~~-~~~G~I~i~ 121 (820)
...|+++||+++|++ +.+|+|+|++|++||+++|+||||||||||+++|+|+.. +. +++|+|.++
T Consensus 37 ~~~l~~~~l~~~~~~------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~ 104 (286)
T PRK14275 37 KPHVVAKNFSIYYGE------------FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFD 104 (286)
T ss_pred ceEEEEeeeEEEECC------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEEC
Confidence 345999999999853 249999999999999999999999999999999999853 21 378999999
Q ss_pred CEeCCCc-----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----cccccccc
Q 003437 122 GKPVTTS-----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR----SATHTYIG 192 (820)
Q Consensus 122 G~~~~~~-----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig 192 (820)
|+++... ..++.++|++|++.+++. ||.||+.+....+. ..+....++++.++++.+|+. +..++.+
T Consensus 105 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~- 180 (286)
T PRK14275 105 GEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDKNA- 180 (286)
T ss_pred CEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhCCh-
Confidence 9987421 235678999999988885 99999998754321 112333456788889999874 3334443
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 193 NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 193 ~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|+++. +.++||++++|
T Consensus 181 ----~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~-~~~~~d~i~~L 254 (286)
T PRK14275 181 ----LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQ-ASRVSDYTMFF 254 (286)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHH-HHHhCCEEEEE
Confidence 57999999999999999999999999999999999999999999999975 6899999999985 77899999999
Q ss_pred eCCeEEEEcCccchh
Q 003437 273 ARGRLVYMGSPVALP 287 (820)
Q Consensus 273 ~~G~iv~~G~~~~~~ 287 (820)
++|+++..|+++++.
T Consensus 255 ~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 255 YEGVLVEHAPTAQLF 269 (286)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999987764
No 197
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.4e-40 Score=334.79 Aligned_cols=189 Identities=46% Similarity=0.747 Sum_probs=165.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++|+++.|+... .++.+|+|+|+++++||+++|+||||||||||+++|+|+....+++|+|.++|+++.
T Consensus 3 ~l~~~~l~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~ 74 (192)
T cd03232 3 VLTWKNLNYTVPVKG--------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD 74 (192)
T ss_pred EEEEeeeEEEecCCC--------CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH
Confidence 489999999996321 113599999999999999999999999999999999998643457899999999875
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
...++.++|++|++.+++.+||+||+.+...+ + .||||||||
T Consensus 75 -~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~qr 116 (192)
T cd03232 75 -KNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRKR 116 (192)
T ss_pred -HHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhHH
Confidence 33456789999999999999999999875311 0 499999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC-CeEEEEc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR-GRLVYMG 281 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~-G~iv~~G 281 (820)
|+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++.++...||++++|++ |++++.|
T Consensus 117 v~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 117 LTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999877999999999997446778999999999 9999865
No 198
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-39 Score=350.63 Aligned_cols=224 Identities=26% Similarity=0.401 Sum_probs=185.5
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC---CCCceEEEECC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ---GSLEGSVRIDG 122 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~---~~~~G~I~i~G 122 (820)
..|+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|++.+ .+++|+|.++|
T Consensus 24 ~~l~~~nl~~~~~~------------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g 91 (272)
T PRK14236 24 TALEVRNLNLFYGD------------KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDG 91 (272)
T ss_pred cEEEEEEEEEEECC------------eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECC
Confidence 35999999999953 2499999999999999999999999999999999999753 14689999999
Q ss_pred EeCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 003437 123 KPVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRR 197 (820)
Q Consensus 123 ~~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~ 197 (820)
.++.. ...++.++|++|++.+++. ||+||+.+...... ...+++.+++++++++.+++.+...... +..+.
T Consensus 92 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 167 (272)
T PRK14236 92 QNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRL-HENAF 167 (272)
T ss_pred EECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHh-hCCcc
Confidence 98753 1235678999999988886 99999988754321 1123334567888999999864211111 12345
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++. +.++||++++|++|++
T Consensus 168 ~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~-~~~~~d~i~~l~~G~i 245 (272)
T PRK14236 168 GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQ-AARVSDYTAFMYMGKL 245 (272)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHH-HHhhCCEEEEEECCEE
Confidence 7999999999999999999999999999999999999999999999976 7899999999974 7789999999999999
Q ss_pred EEEcCccchh
Q 003437 278 VYMGSPVALP 287 (820)
Q Consensus 278 v~~G~~~~~~ 287 (820)
+..|+++++.
T Consensus 246 ~~~g~~~~~~ 255 (272)
T PRK14236 246 VEYGDTDTLF 255 (272)
T ss_pred EecCCHHHHh
Confidence 9999877653
No 199
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3.9e-41 Score=398.00 Aligned_cols=220 Identities=31% Similarity=0.502 Sum_probs=187.1
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..++++||+|+|... +..+|+|+|++|+|||.+||+|+||||||||+|+|+|++. |.+|+|++||.++
T Consensus 470 g~I~~~nvsf~y~~~----------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~~dg~dl 537 (709)
T COG2274 470 GEIEFENVSFRYGPD----------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILLDGVDL 537 (709)
T ss_pred ceEEEEEEEEEeCCC----------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEeH
Confidence 359999999999753 2369999999999999999999999999999999999985 4689999999998
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCCCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKR-----VYELLDQLGLRSATHTYIGNEGRR 197 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~ig~~~~~ 197 (820)
.. ...|+.+|||+||+.+|.. |++||+.++.. ..+.++..+. +.+.++ .++...||.+|+.+ .
T Consensus 538 ~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p-----~~~~e~i~~A~~~ag~~~fI~--~lP~gy~t~v~E~G-~ 608 (709)
T COG2274 538 NDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGNP-----EATDEEIIEAAQLAGAHEFIE--NLPMGYDTPVGEGG-A 608 (709)
T ss_pred HhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHH--hcccccccccccCC-C
Confidence 64 4578899999999999987 99999998742 2333332221 122222 45667889998644 5
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
+||||||||++|||||+++|+||+||||||+||+.+...|.+.|.++.. |+|+|+++|+++ ..+.||||++|++|++
T Consensus 609 ~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~--ti~~adrIiVl~~Gki 685 (709)
T COG2274 609 NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLS--TIRSADRIIVLDQGKI 685 (709)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccch--HhhhccEEEEccCCce
Confidence 7999999999999999999999999999999999999999999999864 799999999997 4567999999999999
Q ss_pred EEEcCccchhhh
Q 003437 278 VYMGSPVALPAH 289 (820)
Q Consensus 278 v~~G~~~~~~~~ 289 (820)
+.+|+.+++...
T Consensus 686 v~~gs~~ell~~ 697 (709)
T COG2274 686 VEQGSHEELLAQ 697 (709)
T ss_pred eccCCHHHHHHh
Confidence 999999998764
No 200
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=5e-40 Score=382.29 Aligned_cols=221 Identities=25% Similarity=0.409 Sum_probs=188.5
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+|+|+|++++.+++|+|.++|+++..
T Consensus 2 l~i~~l~~~~~~------------~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~ 69 (500)
T TIGR02633 2 LEMKGIVKTFGG------------VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKA 69 (500)
T ss_pred EEEEeEEEEeCC------------eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCC
Confidence 789999999953 24999999999999999999999999999999999988543468999999998754
Q ss_pred cc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCCh
Q 003437 128 SY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPP-SISRDEKKKRVYELLDQLGLRSAT-HTYIGNEGRRGVSG 201 (820)
Q Consensus 128 ~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~-~~~ig~~~~~~LSG 201 (820)
.. .++.++||+|++.+++.+||.||+.+........ ....++..++++++++.+||.+.. ++.++ .|||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSg 144 (500)
T TIGR02633 70 SNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVG-----DYGG 144 (500)
T ss_pred CCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchh-----hCCH
Confidence 21 2356899999999999999999998865432110 123344556789999999998654 44454 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +..+||++++|++|+++..|
T Consensus 145 G~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~-~~~~~d~i~~l~~G~i~~~~ 223 (500)
T TIGR02633 145 GQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNE-VKAVCDTICVIRDGQHVATK 223 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH-HHHhCCEEEEEeCCeEeeec
Confidence 99999999999999999999999999999999999999999998889999999999974 78899999999999999999
Q ss_pred Cccch
Q 003437 282 SPVAL 286 (820)
Q Consensus 282 ~~~~~ 286 (820)
+++++
T Consensus 224 ~~~~~ 228 (500)
T TIGR02633 224 DMSTM 228 (500)
T ss_pred CcccC
Confidence 87654
No 201
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-39 Score=358.52 Aligned_cols=226 Identities=23% Similarity=0.390 Sum_probs=189.2
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC---CCCceEEEECC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ---GSLEGSVRIDG 122 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~---~~~~G~I~i~G 122 (820)
..|+++|++++|... .+.+|+|+||+|++||+++|+||||||||||+++|+|+..+ .+++|+|.++|
T Consensus 79 ~~i~~~nls~~y~~~----------~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 79 NVFEIRNFNFWYMNR----------TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred ceEEEEeeEEEecCC----------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 469999999999531 23599999999999999999999999999999999998743 24689999999
Q ss_pred EeCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHHHcCCCccccccccCCCC
Q 003437 123 KPVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISR-DEKKKRVYELLDQLGLRSATHTYIGNEGR 196 (820)
Q Consensus 123 ~~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~~~ig~~~~ 196 (820)
+++.. ...++.++||||++.+++ .|++||+.|+.... ..+. +...+.+.++++.++|.+..++.++ +.+
T Consensus 149 ~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~-~~~ 223 (329)
T PRK14257 149 TNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLD-KAG 223 (329)
T ss_pred EEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhh-CCc
Confidence 99852 134667999999999886 69999999875432 1222 2234557888999988654444443 345
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..|||||||||+|||||+.+|+||||||||+|||+.+...+.+.|+++.+ ++|||++||++.. +.++||||++|++|+
T Consensus 224 ~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~-i~~~~Driivl~~G~ 301 (329)
T PRK14257 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQ-AQRISDETVFFYQGW 301 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HHHhCCEEEEEECCE
Confidence 68999999999999999999999999999999999999999999999876 6999999999985 778899999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
+++.|+++++..
T Consensus 302 i~e~g~~~~l~~ 313 (329)
T PRK14257 302 IEEAGETKTIFI 313 (329)
T ss_pred EEEeCCHHHHhc
Confidence 999999988753
No 202
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-39 Score=345.92 Aligned_cols=219 Identities=22% Similarity=0.341 Sum_probs=181.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC---CceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGS---LEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~---~~G~I~i~G~ 123 (820)
.|+++||++.|+. +.+|+|+|+++++||+++|+||||||||||+++|+|+....+ ++|+|.++|+
T Consensus 5 ~l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 72 (252)
T PRK14255 5 IITSSDVHLFYGK------------FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQ 72 (252)
T ss_pred eEEEEeEEEEECC------------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCE
Confidence 4999999999853 249999999999999999999999999999999999864212 4899999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS----ATHTYIGNE 194 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~ig~~ 194 (820)
++.. ...++.++|++|++.+++ .||.||+.+....+.. ...+...+++.+.++.+++.. ..++.
T Consensus 73 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~---- 145 (252)
T PRK14255 73 NIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHES---- 145 (252)
T ss_pred EcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcC----
Confidence 8742 123567899999998888 6999999987543311 122233456777888888742 23333
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++. +.++||++++|++
T Consensus 146 -~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~-~~~~~d~i~~l~~ 222 (252)
T PRK14255 146 -ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQ-ASRISDKTAFFLT 222 (252)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHH-HHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999976 5899999999974 7789999999999
Q ss_pred CeEEEEcCccchh
Q 003437 275 GRLVYMGSPVALP 287 (820)
Q Consensus 275 G~iv~~G~~~~~~ 287 (820)
|+++..|++.++.
T Consensus 223 G~i~~~~~~~~~~ 235 (252)
T PRK14255 223 GNLIEFADTKQMF 235 (252)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999887664
No 203
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-40 Score=351.83 Aligned_cols=223 Identities=22% Similarity=0.379 Sum_probs=183.1
Q ss_pred CCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCE
Q 003437 44 PGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK 123 (820)
Q Consensus 44 ~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~ 123 (820)
+...|+++||+++|+++ +.+|+|+|++|++||+++|+||||||||||+|+|+|+++ +++|+|.++|+
T Consensus 3 ~~~~l~~~~l~~~~~~~-----------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~ 69 (272)
T PRK15056 3 QQAGIVVNDVTVTWRNG-----------HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQ 69 (272)
T ss_pred hhceEEEEeEEEEecCC-----------cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCE
Confidence 34569999999999521 349999999999999999999999999999999999885 46899999999
Q ss_pred eCCCccccceEEEEccCCCCC--CCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 003437 124 PVTTSYMKMVSSYVMQDDQLF--PMLTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS 200 (820)
Q Consensus 124 ~~~~~~~~~~~gyv~Q~~~l~--~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS 200 (820)
++.....++.++|++|++.+. ...+++|++.++...... .........+++.++++.+||.+..++.++ .||
T Consensus 70 ~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS 144 (272)
T PRK15056 70 PTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIG-----ELS 144 (272)
T ss_pred EhHHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcc-----cCC
Confidence 875332234689999997642 234788988654211000 001122345567889999999888777765 699
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+++. +.++||+++++ +|++++.
T Consensus 145 gG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~-~~~~~d~v~~~-~G~i~~~ 222 (272)
T PRK15056 145 GGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGS-VTEFCDYTVMV-KGTVLAS 222 (272)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEE-CCEEEee
Confidence 999999999999999999999999999999999999999999998789999999999974 77899999877 8999999
Q ss_pred cCccch
Q 003437 281 GSPVAL 286 (820)
Q Consensus 281 G~~~~~ 286 (820)
|+++++
T Consensus 223 g~~~~~ 228 (272)
T PRK15056 223 GPTETT 228 (272)
T ss_pred cCHHhc
Confidence 988765
No 204
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=349.89 Aligned_cols=219 Identities=21% Similarity=0.342 Sum_probs=181.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--C-CCCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIA--Q-GSLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~--~-~~~~G~I~i~G~ 123 (820)
.|+++||++.|++ +.+|+|+|++|++||+++|+|+||||||||+++|+|++. + .+++|+|.++|+
T Consensus 24 ~l~~~~l~~~~~~------------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~ 91 (271)
T PRK14238 24 VFDTQNLNLWYGE------------DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQ 91 (271)
T ss_pred EEEEeeeEEEECC------------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCE
Confidence 5999999999853 248999999999999999999999999999999999875 1 147899999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR----SATHTYIGNE 194 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~ 194 (820)
++.. ...++.++|++|++.+++. ||+||+.++...+. ..+.+..++.+.++++.+++. +..+..
T Consensus 92 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~---- 164 (271)
T PRK14238 92 NIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDN---- 164 (271)
T ss_pred EcccccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcC----
Confidence 8742 1235678999999988875 99999998754321 112223345677788877653 233333
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
+..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|+++. +.++||++++|++
T Consensus 165 -~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~-i~~~~d~i~~l~~ 241 (271)
T PRK14238 165 -AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQ-AARISDKTAFFLN 241 (271)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHH-HHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999976 7999999999974 7789999999999
Q ss_pred CeEEEEcCccchh
Q 003437 275 GRLVYMGSPVALP 287 (820)
Q Consensus 275 G~iv~~G~~~~~~ 287 (820)
|++++.|+++++.
T Consensus 242 G~i~~~g~~~~~~ 254 (271)
T PRK14238 242 GYVNEYDDTDKIF 254 (271)
T ss_pred CEEEEeCCHHHHH
Confidence 9999999887653
No 205
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=350.44 Aligned_cols=220 Identities=23% Similarity=0.318 Sum_probs=183.2
Q ss_pred CCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEE
Q 003437 44 PGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRI 120 (820)
Q Consensus 44 ~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i 120 (820)
++..|+++||++.|++ +.+|+|+|++|++||+++|+||||||||||+++|+|+..+. +.+|+|.+
T Consensus 17 ~~~~l~~~nl~~~~~~------------~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 84 (274)
T PRK14265 17 DHSVFEVEGVKVFYGG------------FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLY 84 (274)
T ss_pred CCceEEEeeEEEEeCC------------eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEE
Confidence 3446999999999853 24999999999999999999999999999999999997532 25899999
Q ss_pred CCEeCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccc
Q 003437 121 DGKPVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS----ATHTYI 191 (820)
Q Consensus 121 ~G~~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~i 191 (820)
+|+++.. ...++.++|++|++.+++. ||.||+.+....+. .. ....+.+.++++.+++.+ ..++.
T Consensus 85 ~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~- 158 (274)
T PRK14265 85 RDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKEK- 158 (274)
T ss_pred CCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcCC-
Confidence 9998742 1235678999999988875 99999988754321 11 123345677888888742 23333
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEE
Q 003437 192 GNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIV 271 (820)
Q Consensus 192 g~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 271 (820)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++++ +.|||+++|+++. +.++||++++
T Consensus 159 ----~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~-~~~~~d~i~~ 232 (274)
T PRK14265 159 ----GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQ-ASRVADWTAF 232 (274)
T ss_pred ----cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HHHhCCEEEE
Confidence 457999999999999999999999999999999999999999999999975 6899999999985 7889999999
Q ss_pred Ee---------CCeEEEEcCccchh
Q 003437 272 LA---------RGRLVYMGSPVALP 287 (820)
Q Consensus 272 L~---------~G~iv~~G~~~~~~ 287 (820)
|+ +|++++.|+++++.
T Consensus 233 l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 233 FNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred EecccccccccCceEEEeCCHHHHH
Confidence 98 79999999998774
No 206
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-39 Score=351.72 Aligned_cols=218 Identities=23% Similarity=0.392 Sum_probs=183.4
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC---CCCceEEEEC
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ---GSLEGSVRID 121 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~---~~~~G~I~i~ 121 (820)
...|+++||++.|.+ +.+|+|+||+|++||+++|+||||||||||+++|+|++.+ .+++|+|.++
T Consensus 37 ~~~l~i~~l~~~~~~------------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~ 104 (285)
T PRK14254 37 ETVIEARDLNVFYGD------------EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFR 104 (285)
T ss_pred CceEEEEEEEEEECC------------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEEC
Confidence 345999999999853 2499999999999999999999999999999999999753 1468999999
Q ss_pred CEeCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccc
Q 003437 122 GKPVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS----ATHTYIG 192 (820)
Q Consensus 122 G~~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~ig 192 (820)
|+++.. ...++.++|++|++.+++. ||.||+.+....+. ... +..++++++++.+||.+ ..++.
T Consensus 105 G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~-- 177 (285)
T PRK14254 105 GKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS-- 177 (285)
T ss_pred CEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC--
Confidence 998742 1345678999999988886 99999998765431 222 34567899999999853 33444
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEE-E
Q 003437 193 NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRII-V 271 (820)
Q Consensus 193 ~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~-l 271 (820)
+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ .|||+++|++.. +..+||+++ +
T Consensus 178 ---~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~~-i~~~~dri~v~ 252 (285)
T PRK14254 178 ---GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQQ-AARISDKTAVF 252 (285)
T ss_pred ---cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHH-HHhhcCEEEEE
Confidence 3579999999999999999999999999999999999999999999999764 899999999974 778999975 6
Q ss_pred EeCCeEEEEcCccch
Q 003437 272 LARGRLVYMGSPVAL 286 (820)
Q Consensus 272 L~~G~iv~~G~~~~~ 286 (820)
|++|+++..|+++++
T Consensus 253 l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 253 LTGGELVEFDDTDKI 267 (285)
T ss_pred eeCCEEEEeCCHHHH
Confidence 799999999987765
No 207
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.1e-39 Score=339.41 Aligned_cols=211 Identities=31% Similarity=0.532 Sum_probs=181.5
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||++.|..+. +.+.+|+|+||++++||+++|+||||||||||+++|+|+++ +++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~~~--------~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 71 (220)
T TIGR02982 2 ISIRNLNHYYGHGS--------LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELYG 71 (220)
T ss_pred EEEEEEEEEccCCC--------cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhHh
Confidence 78999999985321 12459999999999999999999999999999999999875 468999999998753
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 128 S------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 128 ~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
. ..++.++|++|++.+++.+|+.||+.+...... ....++..+++.++++.+||.+..++.+. .|||
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~ 144 (220)
T TIGR02982 72 ASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYPH-----NLSG 144 (220)
T ss_pred cCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcChh-----hCCH
Confidence 1 235678999999999998999999998764321 13455566789999999999877777654 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
|||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ .++|||+++|+++ ..++||++++|++|++
T Consensus 145 G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 145 GQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999986 5899999999986 3478999999999986
No 208
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=6.1e-40 Score=337.62 Aligned_cols=199 Identities=29% Similarity=0.464 Sum_probs=171.6
Q ss_pred EEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC--
Q 003437 50 FKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT-- 127 (820)
Q Consensus 50 ~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~-- 127 (820)
++||++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++ +++|+|.++|+++..
T Consensus 1 i~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~ 66 (206)
T TIGR03608 1 LKNISKKFGD------------KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLN 66 (206)
T ss_pred CcceEEEECC------------EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccc
Confidence 4688888853 249999999999999999999999999999999999885 468999999998531
Q ss_pred -c----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 128 -S----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 128 -~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
. ..++.++|++|++.+++.+||+||+.+..... .....+..++++++++.+||++..++.+. .||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G 138 (206)
T TIGR03608 67 SKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKIY-----ELSGG 138 (206)
T ss_pred hhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCChh-----hCCHH
Confidence 1 23467899999999999999999999875432 23344556788999999999887777764 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
||||++||++|+.+|++|||||||+|||+.++..+.+.|+++.++|.|||+++|++.. + .+||++++|
T Consensus 139 ~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~-~-~~~d~i~~l 206 (206)
T TIGR03608 139 EQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEV-A-KQADRVIEL 206 (206)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-hhcCEEEeC
Confidence 9999999999999999999999999999999999999999998779999999999963 4 579999875
No 209
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.7e-39 Score=348.17 Aligned_cols=229 Identities=26% Similarity=0.354 Sum_probs=188.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|....- .+. ..++.+|+|+||+|++||+++|+||||||||||+++|+|+.. +++|+|.++|.++.
T Consensus 3 ~l~~~nl~~~~~~~~~-~~~--~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~ 77 (268)
T PRK10419 3 LLNVSGLSHHYAHGGL-SGK--HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLA 77 (268)
T ss_pred eEEEeceEEEecCCcc-ccc--cCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 4899999999963100 000 002459999999999999999999999999999999999875 46899999999875
Q ss_pred Cc------cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 003437 127 TS------YMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRR 197 (820)
Q Consensus 127 ~~------~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~ 197 (820)
.. ..++.++|++|++ .+++..|+.|++.+...... .....+..++++++++.+|+. +..++.++
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~----- 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDKRPP----- 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhCCCc-----
Confidence 31 1356789999997 46778899999977543211 223445566889999999996 45666554
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++.. +.++||++++|++|+
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~-i~~~~d~i~~l~~G~ 229 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRL-VERFCQRVMVMDNGQ 229 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHH-HHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999999875 8999999999974 778999999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
+++.|+++++..
T Consensus 230 i~~~g~~~~~~~ 241 (268)
T PRK10419 230 IVETQPVGDKLT 241 (268)
T ss_pred EeeeCChhhccC
Confidence 999999877653
No 210
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-39 Score=348.41 Aligned_cols=221 Identities=22% Similarity=0.334 Sum_probs=182.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G~ 123 (820)
.|+++||+++|+. +.+|+|+|++|++||+++|+||||||||||+|+|+|+..+. +++|+|.++|+
T Consensus 10 ~l~i~~v~~~~~~------------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 77 (264)
T PRK14243 10 VLRTENLNVYYGS------------FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGK 77 (264)
T ss_pred EEEEeeeEEEECC------------EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCE
Confidence 5999999999853 24899999999999999999999999999999999987421 36899999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
++.. ...++.++|++|++.+++. ||.||+.+....+ ... .+..+++.++++.+++.+..+... +..+..
T Consensus 78 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~ 151 (264)
T PRK14243 78 NLYAPDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDKL-KQSGLS 151 (264)
T ss_pred EccccccChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHHh-cCCccc
Confidence 8742 2235678999999988884 9999998875432 111 233456777888888753211111 223457
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe-----
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA----- 273 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~----- 273 (820)
||||||||++|||+|+.+|++|||||||+|||+.++..+.++|+++++ ++|||+++|+++. +.++||++++|+
T Consensus 152 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~-~~~~~d~v~~l~~~~~~ 229 (264)
T PRK14243 152 LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQ-AARVSDMTAFFNVELTE 229 (264)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH-HHHhCCEEEEEeccccc
Confidence 999999999999999999999999999999999999999999999976 5899999999974 889999999998
Q ss_pred ----CCeEEEEcCccchh
Q 003437 274 ----RGRLVYMGSPVALP 287 (820)
Q Consensus 274 ----~G~iv~~G~~~~~~ 287 (820)
+|++++.|+++++.
T Consensus 230 ~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 230 GGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred ccccCceEEEeCCHHHHH
Confidence 79999999988774
No 211
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=2.8e-40 Score=347.77 Aligned_cols=215 Identities=29% Similarity=0.502 Sum_probs=172.8
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||++.|... .+.+|+|+|+++++||+++|+||||||||||+++|+|+++ +.+|+|.++|.++..
T Consensus 1 i~~~~l~~~~~~~----------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 68 (237)
T cd03252 1 ITFEHVRFRYKPD----------GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLAL 68 (237)
T ss_pred CEEEEEEEecCCC----------CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHh
Confidence 4789999998531 1359999999999999999999999999999999999985 468999999998743
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCCCCC
Q 003437 128 ---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKK-----KRVYELLDQL--GLRSATHTYIGNEGRR 197 (820)
Q Consensus 128 ---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~ig~~~~~ 197 (820)
...++.++|++|++.+++ .||.||+.+... ........ ..+.++++.+ ++....+.. +.
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~ 137 (237)
T cd03252 69 ADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----GA 137 (237)
T ss_pred cCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----CC
Confidence 223567899999998876 599999987431 11121111 1223344444 444333333 45
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ |+|||+++|+++. +. .||++++|++|++
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~~-~~d~v~~l~~G~i 214 (237)
T cd03252 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLST-VK-NADRIIVMEKGRI 214 (237)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-HH-hCCEEEEEECCEE
Confidence 7999999999999999999999999999999999999999999999974 8999999999985 54 6999999999999
Q ss_pred EEEcCccchhh
Q 003437 278 VYMGSPVALPA 288 (820)
Q Consensus 278 v~~G~~~~~~~ 288 (820)
++.|+++++..
T Consensus 215 ~~~~~~~~~~~ 225 (237)
T cd03252 215 VEQGSHDELLA 225 (237)
T ss_pred EEEcCHHHHHh
Confidence 99998877643
No 212
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=9.6e-40 Score=342.28 Aligned_cols=205 Identities=25% Similarity=0.440 Sum_probs=174.1
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceEEEECCEeCCCccc-cceEEEEccCCC--CCCCCC
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG--SLEGSVRIDGKPVTTSYM-KMVSSYVMQDDQ--LFPMLT 148 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~--~~~G~I~i~G~~~~~~~~-~~~~gyv~Q~~~--l~~~lT 148 (820)
+|+|+|+++++||+++|+||||||||||+|+|+|++++. +++|+|.++|+++..... ++.++|++|++. +++.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 579999999999999999999999999999999998531 268999999998754322 357899999984 567789
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC---ccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCC
Q 003437 149 VFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR---SATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEP 225 (820)
Q Consensus 149 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~---~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEP 225 (820)
+.|++.+..... .....+..+++.++++.+||. +..++.+ ..|||||||||+||++|+.+|++||||||
T Consensus 81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSL---GKLSKQARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHc---CccHHHHHHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999998765432 112234456789999999997 3455555 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchh
Q 003437 226 TSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 226 tsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 287 (820)
|+|||+.++..+.+.|++++++ |+|||+++|+++. +..+||++++|++|+++..|+++++.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGV-VARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999874 8999999999984 77899999999999999999887764
No 213
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.9e-39 Score=344.87 Aligned_cols=219 Identities=25% Similarity=0.366 Sum_probs=181.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe--
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP-- 124 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~-- 124 (820)
.|+++||++.|++ +.+|+|+|++|++||+++|+||||||||||+++|+|+.+ +.+|+|.++|++
T Consensus 3 ~l~~~~l~~~~~~------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (253)
T TIGR02323 3 LLQVSGLSKSYGG------------GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSGA 68 (253)
T ss_pred eEEEeeeEEEeCC------------ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEeccccc
Confidence 4999999999853 248999999999999999999999999999999999885 468999999976
Q ss_pred ---CCCcc-------ccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccc
Q 003437 125 ---VTTSY-------MKMVSSYVMQDDQ--LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYI 191 (820)
Q Consensus 125 ---~~~~~-------~~~~~gyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~i 191 (820)
+.... .++.++|++|++. +++.+|+.||+.+..... . .....+..+++.++++.+|+. +..++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 146 (253)
T TIGR02323 69 ELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDLP 146 (253)
T ss_pred ccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcCc
Confidence 43211 2346899999974 456679999997643211 1 011223456788999999997 3566655
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEE
Q 003437 192 GNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRII 270 (820)
Q Consensus 192 g~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 270 (820)
. .|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++.. +..+||+++
T Consensus 147 ~-----~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~-~~~~~d~~~ 220 (253)
T TIGR02323 147 R-----AFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGV-ARLLAQRLL 220 (253)
T ss_pred h-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEE
Confidence 4 69999999999999999999999999999999999999999999998764 8999999999974 777899999
Q ss_pred EEeCCeEEEEcCccchh
Q 003437 271 VLARGRLVYMGSPVALP 287 (820)
Q Consensus 271 lL~~G~iv~~G~~~~~~ 287 (820)
+|++|++++.|+++++.
T Consensus 221 ~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 221 VMQQGRVVESGLTDQVL 237 (253)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999887664
No 214
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.8e-39 Score=331.47 Aligned_cols=192 Identities=49% Similarity=0.829 Sum_probs=165.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|+.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|+++..+.+|+|.++|+++.
T Consensus 3 ~l~~~~ls~~~~~~~~------~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~ 76 (194)
T cd03213 3 TLSFRNLTVTVKSSPS------KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD 76 (194)
T ss_pred EEEEEeeEEEEecCCC------cccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCc
Confidence 4899999999964210 0124599999999999999999999999999999999998711246899999999886
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
....++.++|++|++.+++.+|++||+.+...+. .||||||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~~qr 119 (194)
T cd03213 77 KRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGERKR 119 (194)
T ss_pred hHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHHHHH
Confidence 5445667899999999999999999997643110 499999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++..++.++||++++|++|++++.|
T Consensus 120 v~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 120 VSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999998779999999999975577889999999999998764
No 215
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.5e-39 Score=337.12 Aligned_cols=204 Identities=24% Similarity=0.304 Sum_probs=177.4
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
+..|+++|++++|++ +.+|+++|+++++||+++|+||||||||||+|+|+|+++ +.+|+|.++|++
T Consensus 9 ~~~l~~~~l~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~ 74 (214)
T PRK13543 9 PPLLAAHALAFSRNE------------EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKT 74 (214)
T ss_pred cceEEEeeEEEecCC------------ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEE
Confidence 446999999999853 249999999999999999999999999999999999885 467999999998
Q ss_pred CCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 125 VTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 125 ~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
+.....++.++|++|++.+++.+|+.||+.+....+. . ...+.+.++++.++|.+..++.++ .||||||
T Consensus 75 i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 143 (214)
T PRK13543 75 ATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTLVR-----QLSAGQK 143 (214)
T ss_pred ccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCChh-----hCCHHHH
Confidence 8643334568999999999999999999988754321 1 123467789999999887777765 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
|||+||++++.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +.++||++++|+.
T Consensus 144 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~~~i~~l~~ 212 (214)
T PRK13543 144 KRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYA-APPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhh-hhhhcceEEEEee
Confidence 99999999999999999999999999999999999999998889999999999984 8899999999863
No 216
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-39 Score=345.07 Aligned_cols=222 Identities=23% Similarity=0.326 Sum_probs=185.6
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDG 122 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G 122 (820)
..+.++++++.|++ +.+|+|+||++++||+++|+|+||||||||+|+|+|++.+. +.+|+|+++|
T Consensus 7 ~~~~~~~~~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 74 (261)
T PRK14263 7 IVMDCKLDKIFYGN------------FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLG 74 (261)
T ss_pred ceEEEEeEEEEeCC------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECC
Confidence 35999999999853 34999999999999999999999999999999999998541 2689999999
Q ss_pred EeCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 003437 123 KPVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRR 197 (820)
Q Consensus 123 ~~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~ 197 (820)
+++.. ...++.++|++|++.++ .+|+.||+.+....+. . ..+..+++.++++.++|.+..+... +..++
T Consensus 75 ~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~ 148 (261)
T PRK14263 75 QDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKL-KVSGL 148 (261)
T ss_pred EeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhh-hCCcc
Confidence 98742 12356689999999888 4899999998765431 1 2234567899999999865432222 13446
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe----
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA---- 273 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~---- 273 (820)
.||||||||++|||||+.+|++|||||||+|||+.++.++.+.|+++++ +.|||+++|+++. +.++||++++|+
T Consensus 149 ~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~~-i~~~~d~v~~l~~~~~ 226 (261)
T PRK14263 149 SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQQ-AIRVADTTAFFSVDIS 226 (261)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHH-HHHhCCEEEEEecccc
Confidence 7999999999999999999999999999999999999999999999964 7999999999974 788999999996
Q ss_pred ----CCeEEEEcCccchh
Q 003437 274 ----RGRLVYMGSPVALP 287 (820)
Q Consensus 274 ----~G~iv~~G~~~~~~ 287 (820)
+|++++.|+++++.
T Consensus 227 ~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 227 QGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred cccCCceEEEeCCHHHHH
Confidence 89999999987764
No 217
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-40 Score=365.72 Aligned_cols=219 Identities=32% Similarity=0.485 Sum_probs=187.6
Q ss_pred CCCCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEEC
Q 003437 42 MIPGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRID 121 (820)
Q Consensus 42 ~~~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~ 121 (820)
..++..|+|+||+++|+.+ ++||+++||+|++||.+||+|+|||||||++|+|.++.. .+|+|++|
T Consensus 346 ~~~~~~I~F~dV~f~y~~k-----------~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~Id 411 (591)
T KOG0057|consen 346 ELFGGSIEFDDVHFSYGPK-----------RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILID 411 (591)
T ss_pred ccCCCcEEEEeeEEEeCCC-----------CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEEC
Confidence 3445569999999999743 359999999999999999999999999999999999884 58999999
Q ss_pred CEeCCC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------Cccccccc
Q 003437 122 GKPVTT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYI 191 (820)
Q Consensus 122 G~~~~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~i 191 (820)
|+++.. ...|+.+||||||..||.+ ||.+|+.++.. ..+.++ |.++.+..|+ ++...|.+
T Consensus 412 G~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~-----sas~ee----V~e~~k~a~~hd~i~~l~~GY~T~V 481 (591)
T KOG0057|consen 412 GQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNP-----SASDEE----VVEACKRAGLHDVISRLPDGYQTLV 481 (591)
T ss_pred CeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCC-----CcCHHH----HHHHHHHcCcHHHHHhccccchhhH
Confidence 999864 3578889999999999987 99999998742 234433 4444454444 45677889
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEE
Q 003437 192 GNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIV 271 (820)
Q Consensus 192 g~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 271 (820)
|+++. .|||||||||+||||++.+|+|+++|||||.||..+..++++.+++ ...|+|+|++.|+.+. ..-||+|++
T Consensus 482 GerG~-~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~l--l~~~DkI~~ 557 (591)
T KOG0057|consen 482 GERGL-MLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDL--LKDFDKIIV 557 (591)
T ss_pred hhccc-ccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecchh--HhcCCEEEE
Confidence 97664 5999999999999999999999999999999999999999999999 3458999999999874 456999999
Q ss_pred EeCCeEEEEcCccchhh
Q 003437 272 LARGRLVYMGSPVALPA 288 (820)
Q Consensus 272 L~~G~iv~~G~~~~~~~ 288 (820)
|++|++.+.|+.++++.
T Consensus 558 l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 558 LDNGTVKEYGTHSELLA 574 (591)
T ss_pred EECCeeEEeccHHHHhh
Confidence 99999999999999875
No 218
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-39 Score=343.16 Aligned_cols=223 Identities=22% Similarity=0.368 Sum_probs=184.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G~ 123 (820)
.|+++||++.|++ +.+|+|+|++|.+||+++|+||||||||||+++|+|+..+. +++|+|.++|.
T Consensus 3 ~l~~~~v~~~~~~------------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 70 (250)
T PRK14266 3 RIEVENLNTYFDD------------AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGV 70 (250)
T ss_pred EEEEEeEEEEeCC------------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCE
Confidence 4899999999853 24999999999999999999999999999999999986421 36899999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
++.. ...++.++|++|++.+++. |+.||+.+...... ..+.+..++++.++++.+||.+...... +..+..
T Consensus 71 ~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~ 146 (250)
T PRK14266 71 DIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKL-DKSALG 146 (250)
T ss_pred EcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCccc
Confidence 8753 1235678999999988885 99999988654321 1223445677889999999854321112 233457
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
||||||||++||++|+.+|++|+|||||+|||+.++..+.++|+++++ +.|||+++|++.. +...+|++++|++|+++
T Consensus 147 LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~~~~~~~i~~l~~G~i~ 224 (250)
T PRK14266 147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQQ-ATRVSKYTSFFLNGEII 224 (250)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHHH-HHhhcCEEEEEECCeEE
Confidence 999999999999999999999999999999999999999999999965 7999999999985 78899999999999999
Q ss_pred EEcCccchh
Q 003437 279 YMGSPVALP 287 (820)
Q Consensus 279 ~~G~~~~~~ 287 (820)
+.|+++++.
T Consensus 225 ~~g~~~~~~ 233 (250)
T PRK14266 225 ESGLTDQIF 233 (250)
T ss_pred EeCCHHHHH
Confidence 999987763
No 219
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.3e-39 Score=379.13 Aligned_cols=225 Identities=26% Similarity=0.425 Sum_probs=189.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G~ 123 (820)
.|+++||+++|+... ..+.+|+|+||++++||+++|+||||||||||+|+|+|++++. +++|+|.++|+
T Consensus 5 ~l~~~~l~~~~~~~~--------~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 76 (529)
T PRK15134 5 LLAIENLSVAFRQQQ--------TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGE 76 (529)
T ss_pred eEEEeceEEEecCCC--------CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCE
Confidence 599999999995310 1235999999999999999999999999999999999998642 26899999999
Q ss_pred eCCCcc------c-cceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc---ccccc
Q 003437 124 PVTTSY------M-KMVSSYVMQDDQ--LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA---THTYI 191 (820)
Q Consensus 124 ~~~~~~------~-~~~~gyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~i 191 (820)
++.... . ++.+|||+|++. +++.+||+|++.+...... ..+..+..++++++++.+||.+. .++.+
T Consensus 77 ~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 154 (529)
T PRK15134 77 SLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTDYP 154 (529)
T ss_pred ecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhCC
Confidence 875311 1 246899999974 6777899999887543221 23455667889999999999763 45555
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEE
Q 003437 192 GNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRII 270 (820)
Q Consensus 192 g~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 270 (820)
+ +|||||||||+||++|+.+|++|||||||+|||+.++..++++|++++++ |.|||++||+++. +..+||+|+
T Consensus 155 ~-----~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~-~~~~~dri~ 228 (529)
T PRK15134 155 H-----QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSI-VRKLADRVA 228 (529)
T ss_pred c-----ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHH-HHHhcCEEE
Confidence 4 69999999999999999999999999999999999999999999999875 8999999999985 778999999
Q ss_pred EEeCCeEEEEcCccchh
Q 003437 271 VLARGRLVYMGSPVALP 287 (820)
Q Consensus 271 lL~~G~iv~~G~~~~~~ 287 (820)
+|++|++++.|+++++.
T Consensus 229 ~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 229 VMQNGRCVEQNRAATLF 245 (529)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999987764
No 220
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-39 Score=384.44 Aligned_cols=231 Identities=26% Similarity=0.351 Sum_probs=191.9
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.|+....... .....+.+|+||||+|++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~-~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i 388 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLN-RVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRI 388 (623)
T ss_pred ceEEEeeeEEEEcCCCcccc-ccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 36999999999953100000 00012359999999999999999999999999999999999985 4689999999987
Q ss_pred CCc------cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 003437 126 TTS------YMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGR 196 (820)
Q Consensus 126 ~~~------~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~ 196 (820)
... ..++.++||+|++ .+++.+||.|++.+....+. ...+++..+++.++|+.+||. +..++.++
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~---- 462 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYPH---- 462 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCcc----
Confidence 531 1345789999997 58899999999998754321 113445567899999999996 55666654
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
+|||||||||+|||||+.+|++|||||||+|||+.++.+++++|++++++ |.|||++|||++. +..+||+|++|++|
T Consensus 463 -~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~-v~~~~dri~vl~~G 540 (623)
T PRK10261 463 -EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAV-VERISHRVAVMYLG 540 (623)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECC
Confidence 69999999999999999999999999999999999999999999999875 9999999999985 78899999999999
Q ss_pred eEEEEcCccchh
Q 003437 276 RLVYMGSPVALP 287 (820)
Q Consensus 276 ~iv~~G~~~~~~ 287 (820)
++++.|+++++.
T Consensus 541 ~iv~~g~~~~i~ 552 (623)
T PRK10261 541 QIVEIGPRRAVF 552 (623)
T ss_pred EEEEecCHHHHh
Confidence 999999988874
No 221
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-39 Score=366.01 Aligned_cols=217 Identities=32% Similarity=0.504 Sum_probs=186.0
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
+..++.+||++.|+++ +++++|+|+++++|+.+||+|+||||||||+++|+|+.++ ++|+|.+||.+
T Consensus 318 ~~ei~~~~l~~~y~~g-----------~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng~~ 384 (559)
T COG4988 318 PIEISLENLSFRYPDG-----------KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGID 384 (559)
T ss_pred CceeeecceEEecCCC-----------CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCcc
Confidence 4456667999999753 2699999999999999999999999999999999999854 68999999988
Q ss_pred CCC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc------cccccccCCC
Q 003437 125 VTT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS------ATHTYIGNEG 195 (820)
Q Consensus 125 ~~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~------~~~~~ig~~~ 195 (820)
+.. ..++++++||+|++.+|+. |++|||.++.. ..++ +.+.++++..||.+ ..|+.+|+ .
T Consensus 385 l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~s~----e~i~~al~~a~l~~~v~~p~GLdt~ige-~ 453 (559)
T COG4988 385 LRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----DASD----EEIIAALDQAGLLEFVPKPDGLDTVIGE-G 453 (559)
T ss_pred ccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----cCCH----HHHHHHHHHhcHHHhhcCCCcccchhcc-C
Confidence 754 4578999999999999998 99999998632 1233 44566666666643 45778875 4
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.++|||||+|||++||||+++++++|+||||++||.++.+.|++.|.+++++ +|+|++||++.. + .-+|+|++|++|
T Consensus 454 G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl~~-~-~~~D~I~vld~G 530 (559)
T COG4988 454 GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRLED-A-ADADRIVVLDNG 530 (559)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcChHH-H-hcCCEEEEecCC
Confidence 4689999999999999999999999999999999999999999999999875 999999999974 3 459999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|.++++.+
T Consensus 531 ~l~~~g~~~~L~~ 543 (559)
T COG4988 531 RLVEQGTHEELSE 543 (559)
T ss_pred ceeccCCHHHHhh
Confidence 9999999988854
No 222
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-39 Score=375.97 Aligned_cols=217 Identities=27% Similarity=0.362 Sum_probs=186.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++.
T Consensus 4 ~l~~~~l~~~~~~------------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~ 69 (501)
T PRK11288 4 YLSFDGIGKTFPG------------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEMR 69 (501)
T ss_pred eEEEeeeEEEECC------------EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECC
Confidence 5999999999953 249999999999999999999999999999999999885 46899999999875
Q ss_pred Cc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 TS----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
.. ..++.++||+|++.+++.+||.||+.++............+..+++.++++.+||.+..++.++ .||||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 144 (501)
T PRK11288 70 FASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLK-----YLSIG 144 (501)
T ss_pred CCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchh-----hCCHH
Confidence 31 2356789999999999999999999986421110112344556788999999999877776664 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +..+||++++|++|+++..++
T Consensus 145 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~-~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 145 QRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEE-IFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999999999999998889999999999984 778999999999999997665
Q ss_pred c
Q 003437 283 P 283 (820)
Q Consensus 283 ~ 283 (820)
.
T Consensus 224 ~ 224 (501)
T PRK11288 224 D 224 (501)
T ss_pred c
Confidence 3
No 223
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-39 Score=344.46 Aligned_cols=221 Identities=25% Similarity=0.381 Sum_probs=184.0
Q ss_pred CCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC---CceEEEE
Q 003437 44 PGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGS---LEGSVRI 120 (820)
Q Consensus 44 ~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~---~~G~I~i 120 (820)
+...|+++||+++|++ +.+|+|+|++|++||+++|+|+||||||||+++|+|+..+.+ ++|+|.+
T Consensus 13 ~~~~l~~~~l~~~~~~------------~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~ 80 (265)
T PRK14252 13 TQQKSEVNKLNFYYGG------------YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL 80 (265)
T ss_pred CCceEEEEEEEEEECC------------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEE
Confidence 3456999999999953 249999999999999999999999999999999999976422 6899999
Q ss_pred CCEeCCC-------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHHHcCCCc----ccc
Q 003437 121 DGKPVTT-------SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISR-DEKKKRVYELLDQLGLRS----ATH 188 (820)
Q Consensus 121 ~G~~~~~-------~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~----~~~ 188 (820)
+|.++.. ...++.++|++|++.+++. ||+||+.+..... .... ...++++.++++.+++.+ ..+
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~ 156 (265)
T PRK14252 81 HPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRLG 156 (265)
T ss_pred cCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHHh
Confidence 9987631 1235678999999998886 9999998875432 1222 223467888888888742 233
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCE
Q 003437 189 TYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDR 268 (820)
Q Consensus 189 ~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 268 (820)
+. +..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++. +.++||+
T Consensus 157 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~-~~~~~d~ 229 (265)
T PRK14252 157 DL-----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQ-AARVSDY 229 (265)
T ss_pred CC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHH-HHHhCCE
Confidence 33 347999999999999999999999999999999999999999999999976 6899999999974 7789999
Q ss_pred EEEEeCCeEEEEcCccchh
Q 003437 269 IIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 269 v~lL~~G~iv~~G~~~~~~ 287 (820)
+++|++|+++..|+.+++.
T Consensus 230 i~~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 230 TAYMYMGELIEFGATDTIF 248 (265)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999887653
No 224
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.3e-39 Score=378.36 Aligned_cols=221 Identities=27% Similarity=0.389 Sum_probs=186.6
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEEC------
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRID------ 121 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~------ 121 (820)
|+++||+++|++ +.+|+|+||++.+||+++|+||||||||||||+|+|+++..+++|+|.++
T Consensus 1 l~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~ 68 (520)
T TIGR03269 1 IEVKNLTKKFDG------------KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEK 68 (520)
T ss_pred CEEEEEEEEECC------------eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccc
Confidence 578999999953 24999999999999999999999999999999999986212468999997
Q ss_pred -----------------CEeCC-------C------ccccceEEEEccC-CCCCCCCCHHHHHHHHHHhcCCCCCCHHHH
Q 003437 122 -----------------GKPVT-------T------SYMKMVSSYVMQD-DQLFPMLTVFETFMFAAEVRLPPSISRDEK 170 (820)
Q Consensus 122 -----------------G~~~~-------~------~~~~~~~gyv~Q~-~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~ 170 (820)
|.++. . ...++.++||+|+ +.+++.+||+||+.+..... ..+.++.
T Consensus 69 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~ 145 (520)
T TIGR03269 69 CGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEA 145 (520)
T ss_pred ccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHH
Confidence 22221 0 0124568999997 67888899999999876432 2344555
Q ss_pred HHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCc
Q 003437 171 KKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGS 249 (820)
Q Consensus 171 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~ 249 (820)
.+++.++++.+||++..++.++ .|||||||||+||+||+.+|++|||||||+|||+.++..++++|+++++ .|.
T Consensus 146 ~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 220 (520)
T TIGR03269 146 VGRAVDLIEMVQLSHRITHIAR-----DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGI 220 (520)
T ss_pred HHHHHHHHHHcCChhhhhcCcc-----cCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence 6789999999999887777664 6999999999999999999999999999999999999999999999976 499
Q ss_pred EEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchhhh
Q 003437 250 IVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAH 289 (820)
Q Consensus 250 tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 289 (820)
|||++||++.. +.++||++++|++|++++.|+++++...
T Consensus 221 tviivtHd~~~-~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 221 SMVLTSHWPEV-IEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred EEEEEeCCHHH-HHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 99999999985 7789999999999999999988777554
No 225
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-40 Score=344.17 Aligned_cols=215 Identities=31% Similarity=0.461 Sum_probs=175.1
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|++++|+++ ++.+|+++||++++||+++|+||||||||||+++|+|+.+ +++|+|.++|+++..
T Consensus 1 i~~~~l~~~~~~~----------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 68 (234)
T cd03251 1 VEFKNVTFRYPGD----------GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRD 68 (234)
T ss_pred CEEEEEEEEeCCC----------CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhh
Confidence 4789999998532 1259999999999999999999999999999999999985 468999999998753
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCCCCC
Q 003437 128 ---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKK-----KRVYELLDQL--GLRSATHTYIGNEGRR 197 (820)
Q Consensus 128 ---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~ig~~~~~ 197 (820)
...++.++|++|++.+++ .||+||+.+.... ....+.. ..+.++++.+ ++.+..+.. +.
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~ 137 (234)
T cd03251 69 YTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GV 137 (234)
T ss_pred CCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CC
Confidence 123566899999998887 5999999875321 1121111 1234555555 555544444 35
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++. +.. ||++++|++|++
T Consensus 138 ~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~~-~d~v~~l~~G~i 214 (234)
T cd03251 138 KLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLST-IEN-ADRIVVLEDGKI 214 (234)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-Hhh-CCEEEEecCCeE
Confidence 7999999999999999999999999999999999999999999999964 8999999999975 554 999999999999
Q ss_pred EEEcCccchhh
Q 003437 278 VYMGSPVALPA 288 (820)
Q Consensus 278 v~~G~~~~~~~ 288 (820)
+..|+++++..
T Consensus 215 ~~~~~~~~~~~ 225 (234)
T cd03251 215 VERGTHEELLA 225 (234)
T ss_pred eeeCCHHHHHH
Confidence 99998776643
No 226
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=4.2e-39 Score=341.02 Aligned_cols=222 Identities=27% Similarity=0.325 Sum_probs=179.9
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||++.|++ +.+|+|+|++|++||+++|+||||||||||+++|+|+....+++|+|.++|.++..
T Consensus 2 i~~~nl~~~~~~------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~ 69 (248)
T PRK09580 2 LSIKDLHVSVED------------KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLE 69 (248)
T ss_pred eEEEEEEEEeCC------------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCcccc
Confidence 789999999853 24999999999999999999999999999999999985323578999999988743
Q ss_pred c----cccceEEEEccCCCCCCCCCHHHHHHHHHH-hcC--C-CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCC
Q 003437 128 S----YMKMVSSYVMQDDQLFPMLTVFETFMFAAE-VRL--P-PSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRRG 198 (820)
Q Consensus 128 ~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~-~~~--~-~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~ 198 (820)
. ..++.++|++|++.+++.+|+.+++.+... ++. . ......+..++++++++.+++. +..++.+. +.
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~ 145 (248)
T PRK09580 70 LSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VG 145 (248)
T ss_pred CCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----CC
Confidence 1 123468999999988888888777654321 110 0 0012223356788899999995 34444432 26
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhh-cCEEEEEeCCeE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQML-LDRIIVLARGRL 277 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~lL~~G~i 277 (820)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++.|+|||++||++.. +... +|++++|++|++
T Consensus 146 LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~-~~~~~~d~i~~l~~g~i 224 (248)
T PRK09580 146 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQGRI 224 (248)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHhhhCCEEEEEECCeE
Confidence 99999999999999999999999999999999999999999999998778999999999875 6665 899999999999
Q ss_pred EEEcCccch
Q 003437 278 VYMGSPVAL 286 (820)
Q Consensus 278 v~~G~~~~~ 286 (820)
++.|+++.+
T Consensus 225 ~~~g~~~~~ 233 (248)
T PRK09580 225 VKSGDFTLV 233 (248)
T ss_pred EEeCCHHHH
Confidence 999987744
No 227
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.2e-39 Score=345.44 Aligned_cols=200 Identities=26% Similarity=0.428 Sum_probs=174.0
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc---cccceEEEEccCCCCCCCCCHH
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS---YMKMVSSYVMQDDQLFPMLTVF 150 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~---~~~~~~gyv~Q~~~l~~~lTV~ 150 (820)
+|+|+||++++||+++|+||||||||||+++|+|+.+ .+|+|.++|+++... ..++.++|++|++.+++.+||.
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999873 379999999987532 2345689999998888889999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhc-------CCCEEEEe
Q 003437 151 ETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIH-------KPSLLFLD 223 (820)
Q Consensus 151 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~-------~P~lLllD 223 (820)
||+.+.... ....++..++++++++.+||.+..++.++ .||||||||++||++|+. +|++||||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSVN-----QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCcc-----cCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999876321 12334446678999999999877777664 699999999999999998 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccch
Q 003437 224 EPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL 286 (820)
Q Consensus 224 EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 286 (820)
|||+|||+.++..+.++|++++++|.|||++||+++. +.++||++++|++|++++.|+++++
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~-~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNH-TLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999998789999999999974 7889999999999999999987655
No 228
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-39 Score=376.73 Aligned_cols=217 Identities=21% Similarity=0.284 Sum_probs=185.7
Q ss_pred EEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc-
Q 003437 50 FKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS- 128 (820)
Q Consensus 50 ~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~- 128 (820)
++||+++|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++...
T Consensus 1 ~~nl~~~~~~------------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~ 66 (491)
T PRK10982 1 MSNISKSFPG------------VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKS 66 (491)
T ss_pred CCceEEEeCC------------EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCC
Confidence 3688888853 249999999999999999999999999999999999885 4689999999987532
Q ss_pred ---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 129 ---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 129 ---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
..++.++||+|++.+++.+||+||+.+..........+.++..++++++++.+|+.+..++.++ +|||||||
T Consensus 67 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~q 141 (491)
T PRK10982 67 SKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVA-----TLSVSQMQ 141 (491)
T ss_pred HHHHHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCCHHHHH
Confidence 1345689999999899999999999876421101012334445678999999999887777765 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA 285 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 285 (820)
||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +..+||++++|++|+++..|++++
T Consensus 142 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~-~~~~~d~i~~l~~G~i~~~~~~~~ 220 (491)
T PRK10982 142 MIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEE-IFQLCDEITILRDGQWIATQPLAG 220 (491)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEEEECCEEEeecChhh
Confidence 9999999999999999999999999999999999999998889999999999974 778999999999999999998876
Q ss_pred h
Q 003437 286 L 286 (820)
Q Consensus 286 ~ 286 (820)
+
T Consensus 221 ~ 221 (491)
T PRK10982 221 L 221 (491)
T ss_pred C
Confidence 5
No 229
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.1e-39 Score=412.65 Aligned_cols=226 Identities=25% Similarity=0.396 Sum_probs=201.6
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...|+++||+|+|+++ ++.+|+|||+.|++||+++|+||||||||||+|+|+|++. +++|+|.++|++
T Consensus 1935 ~~~L~v~nLsK~Y~~~----------~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~ 2002 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGT----------SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKS 2002 (2272)
T ss_pred CceEEEEEEEEEECCC----------CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEE
Confidence 3469999999999631 2359999999999999999999999999999999999985 468999999999
Q ss_pred CCCc--cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 125 VTTS--YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 125 ~~~~--~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
+... ..++.+||++|++.+++.+||+|+|.+.+.++ +.+.++.+++++++++.+||.+.+|++++ .||||
T Consensus 2003 i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGG 2074 (2272)
T TIGR01257 2003 ILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGG 2074 (2272)
T ss_pred CcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHH
Confidence 8532 23567999999999999999999999987765 24455556788999999999988888876 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||+||+||+.+|+||||||||+|||+.+++.+.+.|++++++|+|||++||+++ ++..+|||+++|++|++++.|+
T Consensus 2075 qKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs 2153 (2272)
T TIGR01257 2075 NKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVKGAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999999888999999999998 5889999999999999999999
Q ss_pred ccchhhhhh
Q 003437 283 PVALPAHLA 291 (820)
Q Consensus 283 ~~~~~~~f~ 291 (820)
++++...+.
T Consensus 2154 ~q~Lk~~~g 2162 (2272)
T TIGR01257 2154 IQHLKSKFG 2162 (2272)
T ss_pred HHHHHHHhC
Confidence 999987765
No 230
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-39 Score=342.94 Aligned_cols=218 Identities=27% Similarity=0.434 Sum_probs=182.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEEC-----
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRID----- 121 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~----- 121 (820)
.|+++|++++|++ +.+|+|+||++.+||+++|+||||||||||+++|+|+..+ .+|+|.++
T Consensus 10 ~i~~~~~~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~--~~G~v~~~G~~~~ 75 (257)
T PRK14246 10 VFNISRLYLYIND------------KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEI--YDSKIKVDGKVLY 75 (257)
T ss_pred heeeeeEEEecCC------------ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CcCceeEcCEEEE
Confidence 4999999999854 3489999999999999999999999999999999998754 45555554
Q ss_pred -CEeCCC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 003437 122 -GKPVTT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS----ATHTYIGN 193 (820)
Q Consensus 122 -G~~~~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~ig~ 193 (820)
|.++.. ...++.++|++|++.+++.+||+||+.+...... ...+++..+++.++++.+|+.+ ..+..
T Consensus 76 ~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--- 150 (257)
T PRK14246 76 FGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP--- 150 (257)
T ss_pred CCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC---
Confidence 455432 1235678999999999999999999998754321 1234455677899999999964 33443
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 194 EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 194 ~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++.. +..+||++++|+
T Consensus 151 --~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~-~~~~~d~v~~l~ 226 (257)
T PRK14246 151 --ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQ-VARVADYVAFLY 226 (257)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHH-HHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999965 6999999999974 778999999999
Q ss_pred CCeEEEEcCccchh
Q 003437 274 RGRLVYMGSPVALP 287 (820)
Q Consensus 274 ~G~iv~~G~~~~~~ 287 (820)
+|+++..|+++++.
T Consensus 227 ~g~i~~~g~~~~~~ 240 (257)
T PRK14246 227 NGELVEWGSSNEIF 240 (257)
T ss_pred CCEEEEECCHHHHH
Confidence 99999999987764
No 231
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=7.1e-40 Score=344.86 Aligned_cols=217 Identities=27% Similarity=0.429 Sum_probs=172.1
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|+++.|++.. ++.+|+|+||++++||+++|+||||||||||+++|+|+++ +++|+|.++|.++..
T Consensus 1 l~i~~l~~~~~~~~---------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 69 (238)
T cd03249 1 IEFKNVSFRYPSRP---------DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRD 69 (238)
T ss_pred CeEEEEEEecCCCC---------CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhh
Confidence 47899999985321 2359999999999999999999999999999999999875 468999999998753
Q ss_pred c---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCCCCC
Q 003437 128 S---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKK-----RVYELLDQL--GLRSATHTYIGNEGRR 197 (820)
Q Consensus 128 ~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~ig~~~~~ 197 (820)
. ..++.++|++|++.+++ .||+||+.+....+ ..++..+ .+.++++.+ ++....+. .++
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~ 138 (238)
T cd03249 70 LNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLVGE-----RGS 138 (238)
T ss_pred cCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceeecc-----CCc
Confidence 1 23456899999998886 59999998753211 1111111 112222333 33333333 345
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++ +|+|||++||+++. +. .||++++|++|++
T Consensus 139 ~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~-~~-~~d~v~~l~~G~i 215 (238)
T cd03249 139 QLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLST-IR-NADLIAVLQNGQV 215 (238)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hh-hCCEEEEEECCEE
Confidence 799999999999999999999999999999999999999999999997 79999999999975 55 7999999999999
Q ss_pred EEEcCccchhhh
Q 003437 278 VYMGSPVALPAH 289 (820)
Q Consensus 278 v~~G~~~~~~~~ 289 (820)
++.|+.+++...
T Consensus 216 ~~~~~~~~~~~~ 227 (238)
T cd03249 216 VEQGTHDELMAQ 227 (238)
T ss_pred EEeCCHHHHhhc
Confidence 999987766543
No 232
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7e-41 Score=327.22 Aligned_cols=220 Identities=26% Similarity=0.439 Sum_probs=196.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
++++||+|+|++ +.+|+|+|+.|++|.+++|+|||||||||||.+++.+++ .++|+|+++|.++..
T Consensus 2 I~i~nv~K~y~~------------~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~ 67 (252)
T COG4604 2 ITIENVSKSYGT------------KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTS 67 (252)
T ss_pred eeehhhhHhhCC------------EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeeccc
Confidence 789999999964 359999999999999999999999999999999999885 468999999999864
Q ss_pred c---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 128 S---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 128 ~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
. ...+.++.+-|+..+...+||+|-+.|+..-. ..+...++.+..+++.++.++|++..|+++. +||||||
T Consensus 68 ~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPY-SqGRlt~eD~~~I~~aieyl~L~~l~dryLd-----~LSGGQr 141 (252)
T COG4604 68 TPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPY-SQGRLTKEDRRIINEAIEYLHLEDLSDRYLD-----ELSGGQR 141 (252)
T ss_pred CChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcc-cCCCCchHHHHHHHHHHHHhcccchHHHhHH-----hcccchh
Confidence 2 34456678889988888999999999984322 2234456778899999999999999998886 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
||.-||+.|+++.+.++||||.+.||...+.++|+.|++++++ |+||+++.||... +..++|+|+-|++|+++..|++
T Consensus 142 QRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~G~vv~~G~~ 220 (252)
T COG4604 142 QRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKNGKVVKQGSP 220 (252)
T ss_pred hhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecCCEEEecCCH
Confidence 9999999999999999999999999999999999999999976 9999999999997 6789999999999999999999
Q ss_pred cchhh
Q 003437 284 VALPA 288 (820)
Q Consensus 284 ~~~~~ 288 (820)
+++++
T Consensus 221 ~eii~ 225 (252)
T COG4604 221 DEIIQ 225 (252)
T ss_pred HHhcC
Confidence 98864
No 233
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.4e-39 Score=338.48 Aligned_cols=210 Identities=33% Similarity=0.533 Sum_probs=174.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++|+++.|+++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~~----------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 69 (220)
T cd03245 2 RIEFRNVSFSYPNQ----------EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIR 69 (220)
T ss_pred eEEEEEEEEEcCCC----------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhH
Confidence 38999999998531 1359999999999999999999999999999999999875 46899999999874
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIG------NEGRR 197 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig------~~~~~ 197 (820)
. ...++.++|++|++.+++ .||.||+.+.... .. .+++.++++.+++.+..++.+. ...+.
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 3 123457899999998887 5999999764211 11 2346678888888776665431 11245
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ .|||++||+++. + ++||++++|++|++
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~-~-~~~d~v~~l~~g~i 216 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSL-L-DLVDRIIVMDSGRI 216 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHH-H-HhCCEEEEEeCCeE
Confidence 79999999999999999999999999999999999999999999999764 899999999974 5 68999999999999
Q ss_pred EEEc
Q 003437 278 VYMG 281 (820)
Q Consensus 278 v~~G 281 (820)
++.|
T Consensus 217 ~~~~ 220 (220)
T cd03245 217 VADG 220 (220)
T ss_pred eecC
Confidence 8754
No 234
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=8.7e-40 Score=387.60 Aligned_cols=214 Identities=27% Similarity=0.389 Sum_probs=181.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|.. ++++|+|+|+++++||.+||+||||||||||+++|+|++ | .+|+|.+||.++.
T Consensus 349 ~i~~~~vsf~~~~-----------~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~i~ 414 (588)
T PRK11174 349 TIEAEDLEILSPD-----------GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIELR 414 (588)
T ss_pred eEEEEeeEEeccC-----------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEecc
Confidence 5999999986632 135999999999999999999999999999999999988 5 4799999999886
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYIGNEGR 196 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~ 196 (820)
. ...++.++||+|++.+|+. |++|||.++.. ..++++ +.++++..++ ++..||.+|+.+
T Consensus 415 ~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~-----~~~~ee----i~~al~~a~l~~~i~~lp~G~dT~vge~G- 483 (588)
T PRK11174 415 ELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGNP-----DASDEQ----LQQALENAWVSEFLPLLPQGLDTPIGDQA- 483 (588)
T ss_pred cCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCCC-----CCCHHH----HHHHHHHhCHHHHHHhcccccccccccCC-
Confidence 4 3467889999999999987 99999998621 234433 4444444443 456789998754
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..||||||||++|||||+++|++||||||||+||+.+...+.+.|+++. +++|+|+++|+++. ...||+|++|++|+
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~--i~~aD~Iivl~~G~ 560 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLED--LAQWDQIWVMQDGQ 560 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHH--HHhCCEEEEEeCCe
Confidence 5699999999999999999999999999999999999999999999885 47999999999964 45699999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
+++.|+.+++.+
T Consensus 561 i~e~G~~~eL~~ 572 (588)
T PRK11174 561 IVQQGDYAELSQ 572 (588)
T ss_pred EeecCCHHHHHh
Confidence 999999888754
No 235
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-39 Score=384.27 Aligned_cols=223 Identities=28% Similarity=0.388 Sum_probs=189.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|.... ....+|+||||++++||+++|+||||||||||+|+|+|++.+ .+|+|.++|..+.
T Consensus 12 ~l~v~~l~~~y~~~~--------~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p--~~G~i~~~g~~~~ 81 (623)
T PRK10261 12 VLAVENLNIAFMQEQ--------QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ--AGGLVQCDKMLLR 81 (623)
T ss_pred eEEEeceEEEecCCC--------CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CCeEEEECCEEec
Confidence 599999999995321 123599999999999999999999999999999999999854 5799999997541
Q ss_pred C-------------c---cc-cceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc--
Q 003437 127 T-------------S---YM-KMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-- 185 (820)
Q Consensus 127 ~-------------~---~~-~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-- 185 (820)
. . .. ++.+|||+|++ .+++.+||.||+.++..... ..+..+.++++.++++.+||.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~ 159 (623)
T PRK10261 82 RRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQ 159 (623)
T ss_pred cccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChh
Confidence 0 0 11 24689999997 68899999999999865421 2355566788999999999964
Q ss_pred -cccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHH
Q 003437 186 -ATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQ 263 (820)
Q Consensus 186 -~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~ 263 (820)
..++++ .+|||||||||+||+||+.+|++|||||||++||+.++.++.++|++++++ |.|||++||++.. +.
T Consensus 160 ~~~~~~~-----~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~-~~ 233 (623)
T PRK10261 160 TILSRYP-----HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGV-VA 233 (623)
T ss_pred hHHhCCC-----ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH-HH
Confidence 345554 479999999999999999999999999999999999999999999999865 9999999999974 78
Q ss_pred hhcCEEEEEeCCeEEEEcCccchh
Q 003437 264 MLLDRIIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 264 ~~~D~v~lL~~G~iv~~G~~~~~~ 287 (820)
++||||++|++|++++.|+++++.
T Consensus 234 ~~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 234 EIADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred HhCCEEEEeeCCeecccCCHHHhh
Confidence 899999999999999999987764
No 236
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=385.87 Aligned_cols=217 Identities=28% Similarity=0.420 Sum_probs=184.1
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+|+|++. ++.+|+|+|++|++||.++|+|+||||||||+|+|+|+++ +.+|+|.+||.++.
T Consensus 341 ~i~~~~vsf~y~~~----------~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 408 (582)
T PRK11176 341 DIEFRNVTFTYPGK----------EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD--IDEGEILLDGHDLR 408 (582)
T ss_pred eEEEEEEEEecCCC----------CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC--CCCceEEECCEEhh
Confidence 59999999999642 2459999999999999999999999999999999999985 46799999999986
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLG-------LRSATHTYIGNEGR 196 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~ig~~~~ 196 (820)
. ..+++.++||+|++.+|+. |++|||.++. +...++ +++.++++..| |++..||.+|+.+
T Consensus 409 ~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~~~~~----~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g- 478 (582)
T PRK11176 409 DYTLASLRNQVALVSQNVHLFND-TIANNIAYAR----TEQYSR----EQIEEAARMAYAMDFINKMDNGLDTVIGENG- 478 (582)
T ss_pred hcCHHHHHhhceEEccCceeecc-hHHHHHhcCC----CCCCCH----HHHHHHHHHhCcHHHHHhcccccCceeCCCC-
Confidence 4 2456789999999999986 9999998752 111233 34555566555 3455788898654
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..||||||||++|||||+++|++|+||||||+||+.+...+++.|+++. +++|+|++||+++. .+.||+|++|++|+
T Consensus 479 ~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~~--~~~~D~Ii~l~~g~ 555 (582)
T PRK11176 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLST--IEKADEILVVEDGE 555 (582)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchHH--HHhCCEEEEEECCE
Confidence 5799999999999999999999999999999999999999999999985 47999999999963 56799999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
+++.|+.+++.+
T Consensus 556 i~e~g~~~~l~~ 567 (582)
T PRK11176 556 IVERGTHAELLA 567 (582)
T ss_pred EEEeCCHHHHHh
Confidence 999999888753
No 237
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.5e-39 Score=391.98 Aligned_cols=213 Identities=32% Similarity=0.463 Sum_probs=183.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+|+|+.. ++.+|+|+|++|++||.+||+|+||||||||+|+|+|++. +.+|+|++||+++.
T Consensus 451 ~I~~~nvsf~Y~~~----------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i~ 518 (686)
T TIGR03797 451 AIEVDRVTFRYRPD----------GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQDLA 518 (686)
T ss_pred eEEEEEEEEEcCCC----------CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcC
Confidence 59999999999632 2459999999999999999999999999999999999985 46899999999986
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-------ATHTYIGNEGR 196 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~~ 196 (820)
. ...++.+|||+|++.+|+. |++|||.++.. .+. +++.++++..|+.+ ..||.+|+.+
T Consensus 519 ~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~------~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige~G- 586 (686)
T TIGR03797 519 GLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP------LTL----DEAWEAARMAGLAEDIRAMPMGMHTVISEGG- 586 (686)
T ss_pred cCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC------CCH----HHHHHHHHHcCcHHHHHhccccccccccCCC-
Confidence 4 3467889999999999987 99999987521 222 34566666666653 4678888654
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..||||||||++|||||+++|++||||||||+||+.+..++.+.|+++ ++|+|+++|+++. .+.||+|++|++|+
T Consensus 587 ~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~--i~~~D~Iivl~~G~ 661 (686)
T TIGR03797 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLST--IRNADRIYVLDAGR 661 (686)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHH--HHcCCEEEEEECCE
Confidence 679999999999999999999999999999999999999999999886 5799999999964 45699999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
+++.|+.+++.+
T Consensus 662 iv~~G~~~~Ll~ 673 (686)
T TIGR03797 662 VVQQGTYDELMA 673 (686)
T ss_pred EEEECCHHHHHh
Confidence 999999988753
No 238
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-39 Score=308.24 Aligned_cols=216 Identities=28% Similarity=0.455 Sum_probs=191.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++|+++.|+.. ++|.|++++.+.||.+.++||||||||||++.|.-+.. +.+|+..|-|...+
T Consensus 2 sirv~~in~~yg~~------------q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~--p~sg~l~ia~~~fd 67 (242)
T COG4161 2 SIQLNGINCFYGAH------------QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFD 67 (242)
T ss_pred ceEEcccccccccc------------hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC--CCCCeEEecccccc
Confidence 48899999999653 48999999999999999999999999999999987654 46899999887654
Q ss_pred C---------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 003437 127 T---------SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRR 197 (820)
Q Consensus 127 ~---------~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~ 197 (820)
- ...|+.+|+|+|+..++|++||.|||.-+. ++. .++++++.+.++.++|+++.|.+.+|+..-
T Consensus 68 ~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~pl----- 140 (242)
T COG4161 68 FSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRYPL----- 140 (242)
T ss_pred cccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccCce-----
Confidence 2 135677899999999999999999997653 222 257888899999999999999999888754
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.|||||+|||+|||||+.+|++|++||||++|||+-..++++++++|+..|.|-+++||..+. +...+.+|+.|++|+|
T Consensus 141 hlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~v-a~k~as~vvyme~g~i 219 (242)
T COG4161 141 HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV-ARKTASRVVYMENGHI 219 (242)
T ss_pred ecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhH-HHhhhhheEeeecCee
Confidence 699999999999999999999999999999999999999999999999999999999999875 7788999999999999
Q ss_pred EEEcCcc
Q 003437 278 VYMGSPV 284 (820)
Q Consensus 278 v~~G~~~ 284 (820)
|+.|+.+
T Consensus 220 ve~g~a~ 226 (242)
T COG4161 220 VEQGDAS 226 (242)
T ss_pred Eeecchh
Confidence 9999864
No 239
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=3.9e-39 Score=336.56 Aligned_cols=209 Identities=29% Similarity=0.425 Sum_probs=175.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +++|+|.++|.++.
T Consensus 7 ~i~~~~l~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 72 (225)
T PRK10247 7 LLQLQNVGYLAGD------------AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDIS 72 (225)
T ss_pred eEEEeccEEeeCC------------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEcC
Confidence 5999999999853 249999999999999999999999999999999999874 46899999999875
Q ss_pred Cc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCChH
Q 003437 127 TS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSGG 202 (820)
.. ..++.++|++|++.+++. ||+||+.+....+. .. ...++++++++.+||. ...++.+. .||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~-----~LS~G 141 (225)
T PRK10247 73 TLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN---QQ--PDPAIFLDDLERFALPDTILTKNIA-----ELSGG 141 (225)
T ss_pred cCCHHHHHhccEEEecccccccc-cHHHHHHhHHhhcC---CC--hHHHHHHHHHHHcCCChHHhcCCcc-----cCCHH
Confidence 32 234678999999988875 99999988654321 11 1235678899999996 45566554 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEe-CCeEEEE
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLA-RGRLVYM 280 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~-~G~iv~~ 280 (820)
|||||+||++|+.+|++|||||||+|||+.++..+.++|+++++ .|.|||+++|+++. +. .||++++|+ ++..+.+
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~~-~~d~i~~l~~~~~~~~~ 219 (225)
T PRK10247 142 EKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-IN-HADKVITLQPHAGEMQE 219 (225)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-HH-hCCEEEEEecccchHhh
Confidence 99999999999999999999999999999999999999999976 48999999999975 54 699999995 5656655
Q ss_pred cC
Q 003437 281 GS 282 (820)
Q Consensus 281 G~ 282 (820)
|.
T Consensus 220 ~~ 221 (225)
T PRK10247 220 AR 221 (225)
T ss_pred hh
Confidence 54
No 240
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-38 Score=347.97 Aligned_cols=225 Identities=23% Similarity=0.377 Sum_probs=183.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC---CCCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ---GSLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~---~~~~G~I~i~G~ 123 (820)
.|+++||++.|++ +.+|+++|++|++||+++|+|||||||||||++|+|++.+ .+.+|+|.++|.
T Consensus 45 ~l~i~nl~~~~~~------------~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~ 112 (305)
T PRK14264 45 KLSVEDLDVYYGD------------DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQ 112 (305)
T ss_pred eEEEEEEEEEeCC------------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCE
Confidence 5999999999853 2499999999999999999999999999999999998752 247899999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC---------CCCC-HHHHHHHHHHHHHHcCCCcccc
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP---------PSIS-RDEKKKRVYELLDQLGLRSATH 188 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~---------~~~~-~~~~~~~v~~~l~~lgL~~~~~ 188 (820)
++.. ...++.++|++|++.+++. ||+||+.+....+.. .... .....+++.++++.++|.+...
T Consensus 113 ~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 191 (305)
T PRK14264 113 DIYQDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN 191 (305)
T ss_pred EcccccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhh
Confidence 8753 1234678999999988885 999999987542110 0011 2233567889999999854222
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCE
Q 003437 189 TYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDR 268 (820)
Q Consensus 189 ~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 268 (820)
... +..++.|||||||||+||++|+++|+||||||||+|||+.++..+.++|+++++ +.|||+++|+++. +.++||+
T Consensus 192 ~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~-i~~~~d~ 268 (305)
T PRK14264 192 DRL-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQ-AARISDQ 268 (305)
T ss_pred HHh-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHH-HHHhcCE
Confidence 222 233467999999999999999999999999999999999999999999999977 4899999999985 7789999
Q ss_pred E-EEEeCCeEEEEcCccchh
Q 003437 269 I-IVLARGRLVYMGSPVALP 287 (820)
Q Consensus 269 v-~lL~~G~iv~~G~~~~~~ 287 (820)
+ ++|++|++++.|+++++.
T Consensus 269 i~~~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 269 TAVFLTGGELVEYDDTDKIF 288 (305)
T ss_pred EEEEecCCEEEEeCCHHHHH
Confidence 6 578999999999887653
No 241
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.6e-40 Score=395.13 Aligned_cols=224 Identities=29% Similarity=0.472 Sum_probs=189.7
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...++++||+|+|+.++ +..||+|+|+.|++|+.+||+|||||||||++++|.+++. |++|+|++||.+
T Consensus 348 ~g~ief~nV~FsYPsRp---------dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd--P~~G~V~idG~d 416 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSRP---------DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD--PTSGEVLIDGED 416 (1228)
T ss_pred ccceEEEEEEecCCCCC---------cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCceEEEcCcc
Confidence 44699999999998653 4579999999999999999999999999999999999885 568999999999
Q ss_pred CCC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH---HHHcCCCccccccccCCCCCC
Q 003437 125 VTT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYEL---LDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 125 ~~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~---l~~lgL~~~~~~~ig~~~~~~ 198 (820)
+.. ...|..+|.|.|+|.||.. |++||+.|+.. +.+.++..+..+.. --...|.+..||.+|+.++ +
T Consensus 417 i~~~~~~~lr~~iglV~QePvlF~~-tI~eNI~~G~~-----dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~-q 489 (1228)
T KOG0055|consen 417 IRNLNLKWLRSQIGLVSQEPVLFAT-TIRENIRYGKP-----DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGV-Q 489 (1228)
T ss_pred chhcchHHHHhhcCeeeechhhhcc-cHHHHHhcCCC-----cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCC-C
Confidence 865 3467789999999999975 99999998742 23444433322111 1123557788999998766 4
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
||||||||++|||||+.+|+|||||||||+||+.+...|.+.|.+.. +|+|.|+++|+++. +.. +|+|++|++|+|+
T Consensus 490 LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLSt-Irn-aD~I~v~~~G~Iv 566 (1228)
T KOG0055|consen 490 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLST-IRN-ADKIAVMEEGKIV 566 (1228)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehhh-hhc-cCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998865 58999999999985 665 9999999999999
Q ss_pred EEcCccchhhh
Q 003437 279 YMGSPVALPAH 289 (820)
Q Consensus 279 ~~G~~~~~~~~ 289 (820)
+.|+++|++..
T Consensus 567 E~G~h~ELi~~ 577 (1228)
T KOG0055|consen 567 EQGTHDELIAL 577 (1228)
T ss_pred EecCHHHHHhc
Confidence 99999999753
No 242
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.6e-39 Score=330.38 Aligned_cols=199 Identities=26% Similarity=0.362 Sum_probs=172.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++ +++|+|.++|.++..
T Consensus 2 l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~~ 67 (204)
T PRK13538 2 LEARNLACERDE------------RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIRR 67 (204)
T ss_pred eEEEEEEEEECC------------EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEccc
Confidence 789999999853 248999999999999999999999999999999999885 468999999998753
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 128 --SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 128 --~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
...++.++|++|++.+++.+||.||+.+....+. . ...++++++++.+||.+..++.+. .|||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~q 136 (204)
T PRK13538 68 QRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPVR-----QLSAGQQR 136 (204)
T ss_pred chHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCChh-----hcCHHHHH
Confidence 2245668999999999999999999998764321 1 234678899999999877777654 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
|++||++|+++|++|||||||+|||+.++..+.++|++++++|.|||++||+++. +....+|++.+
T Consensus 137 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i~~~~~~~~~~ 202 (204)
T PRK13538 137 RVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLP-VASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhh-hccCCceEEec
Confidence 9999999999999999999999999999999999999998778999999999985 66656677766
No 243
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=4.2e-39 Score=376.81 Aligned_cols=231 Identities=28% Similarity=0.419 Sum_probs=189.5
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|+....... .....+.+|+|+||+|++||+++|+||||||||||+|+|+|+++ .+|+|+++|+++
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~-~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i 349 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILK-RTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPL 349 (529)
T ss_pred CcccccCcEEEeecCccccc-cccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEc
Confidence 35999999999952110000 00012459999999999999999999999999999999999873 589999999987
Q ss_pred CCc------cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 003437 126 TTS------YMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGR 196 (820)
Q Consensus 126 ~~~------~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~ 196 (820)
... ..++.++||+|++ .+++.+||.||+.++...+.. ..+..+.++++.++++.+||. +..++.++
T Consensus 350 ~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 424 (529)
T PRK15134 350 HNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYPA---- 424 (529)
T ss_pred cccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCCc----
Confidence 531 1245689999996 488889999999987543211 123444567889999999997 45666664
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..++++|++++++ |.|||++||++.. +.++||++++|++|
T Consensus 425 -~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~-~~~~~d~i~~l~~G 502 (529)
T PRK15134 425 -EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHV-VRALCHQVIVLRQG 502 (529)
T ss_pred -cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH-HHHhcCeEEEEECC
Confidence 69999999999999999999999999999999999999999999999875 8999999999975 78899999999999
Q ss_pred eEEEEcCccchh
Q 003437 276 RLVYMGSPVALP 287 (820)
Q Consensus 276 ~iv~~G~~~~~~ 287 (820)
++++.|+++++.
T Consensus 503 ~i~~~~~~~~~~ 514 (529)
T PRK15134 503 EVVEQGDCERVF 514 (529)
T ss_pred EEEEEcCHHHHh
Confidence 999999887764
No 244
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-39 Score=339.75 Aligned_cols=215 Identities=28% Similarity=0.440 Sum_probs=172.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++|++++|++. +.+|+|+|+++++||+++|+|||||||||||++|+|+++ +.+|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~~-----------~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (229)
T cd03254 2 EIEFENVNFSYDEK-----------KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDIR 68 (229)
T ss_pred eEEEEEEEEecCCC-----------CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeHH
Confidence 48999999998521 249999999999999999999999999999999999985 46899999999875
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc------cCCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYI------GNEGRR 197 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~i------g~~~~~ 197 (820)
. ...++.++|++|++.+++. ||+||+.+.... ... .++.+.++.+++.+..+... -+..+.
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 138 (229)
T cd03254 69 DISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----ATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLGENGG 138 (229)
T ss_pred HcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCC-----CCH----HHHHHHHHHhChHHHHHhCcccccCHhhcCCC
Confidence 3 2245668999999988876 999999875321 111 22334444444433222210 012245
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++ +|+|||++||+++. +. .||++++|++|++
T Consensus 139 ~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~~-~~d~i~~l~~g~~ 215 (229)
T cd03254 139 NLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-IK-NADKILVLDDGKI 215 (229)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-Hh-hCCEEEEEeCCeE
Confidence 799999999999999999999999999999999999999999999996 58999999999975 54 5999999999999
Q ss_pred EEEcCccchh
Q 003437 278 VYMGSPVALP 287 (820)
Q Consensus 278 v~~G~~~~~~ 287 (820)
++.|+.+++.
T Consensus 216 ~~~~~~~~~~ 225 (229)
T cd03254 216 IEEGTHDELL 225 (229)
T ss_pred EEeCCHHHHH
Confidence 9988876654
No 245
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.5e-39 Score=359.44 Aligned_cols=218 Identities=30% Similarity=0.423 Sum_probs=195.7
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...|+++||+|+|++ .++|++|||++++||++||+|.||||||||+|+|+|.++ +++|+|.+||++
T Consensus 6 ~~ll~~~~i~K~Fgg------------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~ 71 (500)
T COG1129 6 PPLLELRGISKSFGG------------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKP 71 (500)
T ss_pred cceeeeecceEEcCC------------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEE
Confidence 346999999999964 359999999999999999999999999999999999885 578999999999
Q ss_pred CCCc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 003437 125 VTTS----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 125 ~~~~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~L 199 (820)
.... ....-++.|+|+..|.|+|||.|||.++...+.+ .-++++...+++.++|+.+|+....+++++ +|
T Consensus 72 ~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~L 146 (500)
T COG1129 72 VAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DL 146 (500)
T ss_pred ccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hC
Confidence 8632 2345588999999999999999999988765431 236778888999999999999655888887 59
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
|+||||.|+||+||..+++||||||||+.|+......+++++++|+++|.+||++||.++ +++++||||.+|++|+.+.
T Consensus 147 siaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRDG~~v~ 225 (500)
T COG1129 147 SIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDGRVVG 225 (500)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeCCEEee
Confidence 999999999999999999999999999999999999999999999999999999999997 5999999999999999998
Q ss_pred EcC
Q 003437 280 MGS 282 (820)
Q Consensus 280 ~G~ 282 (820)
.++
T Consensus 226 ~~~ 228 (500)
T COG1129 226 TRP 228 (500)
T ss_pred ecc
Confidence 887
No 246
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-40 Score=363.44 Aligned_cols=216 Identities=33% Similarity=0.545 Sum_probs=187.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.++++||+|+|++++ .++|+|+||++++||.+||+|+||||||||++.|+|... +.+|+|.+||.++.
T Consensus 336 ~l~~~~vsF~y~~~~----------~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~~ 403 (573)
T COG4987 336 ALELRNVSFTYPGQQ----------TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEIA 403 (573)
T ss_pred eeeeccceeecCCCc----------cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcChh
Confidence 699999999998653 469999999999999999999999999999999999875 56899999999875
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-------ATHTYIGNEGR 196 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~~ 196 (820)
. ...++.+++++|...+|.+ |+++||.++.. +.+. +.+.++++.+||++ .+|+.+|+ ..
T Consensus 404 ~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~-----~AsD----Eel~~aL~qvgL~~l~~~~p~gl~t~lge-~G 472 (573)
T COG4987 404 SLDEQALRETISVLTQRVHLFSG-TLRDNLRLANP-----DASD----EELWAALQQVGLEKLLESAPDGLNTWLGE-GG 472 (573)
T ss_pred hCChhhHHHHHhhhccchHHHHH-HHHHHHhhcCC-----CCCH----HHHHHHHHHcCHHHHHHhChhhhhchhcc-CC
Confidence 3 3356778999999999987 99999987632 2333 45667788888765 45667775 45
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
+.||||||||++|||+|+++.++++|||||.|||+.+.+++++.|.+-++ |+|+|++||+... .+.||||++|++|+
T Consensus 473 ~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~--le~~drIivl~~Gk 549 (573)
T COG4987 473 RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG--LERMDRIIVLDNGK 549 (573)
T ss_pred CcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc--HhhcCEEEEEECCe
Confidence 67999999999999999999999999999999999999999999998765 8999999999975 45799999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
++++|...++..
T Consensus 550 iie~G~~~~Ll~ 561 (573)
T COG4987 550 IIEEGTHAELLA 561 (573)
T ss_pred eeecCCHHhhhc
Confidence 999999988864
No 247
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-39 Score=373.99 Aligned_cols=225 Identities=26% Similarity=0.397 Sum_probs=188.0
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.|+.. +++.+|+|+||+|++||+++|+||||||||||+|+|+|++++ +++|+|.++|+++
T Consensus 258 ~~l~~~~l~~~~~~~---------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~ 327 (506)
T PRK13549 258 VILEVRNLTAWDPVN---------PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPV 327 (506)
T ss_pred ceEEEecCccccccc---------cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEEC
Confidence 359999999988421 013499999999999999999999999999999999999752 3689999999987
Q ss_pred CCc----cccceEEEEccCC---CCCCCCCHHHHHHHHHHhcCCC-C-CCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 003437 126 TTS----YMKMVSSYVMQDD---QLFPMLTVFETFMFAAEVRLPP-S-ISRDEKKKRVYELLDQLGLR-SATHTYIGNEG 195 (820)
Q Consensus 126 ~~~----~~~~~~gyv~Q~~---~l~~~lTV~e~l~~~~~~~~~~-~-~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~ 195 (820)
... ..++.++||+|++ .+++.+||.||+.+........ . .+.++..++++++++.+||. +..++.++
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 404 (506)
T PRK13549 328 KIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIA--- 404 (506)
T ss_pred CCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccc---
Confidence 531 1245689999985 4788899999998764211100 0 13344456789999999996 56777765
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.++|++++++|+|||++|||++. +.++||++++|++|
T Consensus 405 --~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~-~~~~~d~v~~l~~G 481 (506)
T PRK13549 405 --RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPE-VLGLSDRVLVMHEG 481 (506)
T ss_pred --cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHH-HHHhCCEEEEEECC
Confidence 699999999999999999999999999999999999999999999998889999999999974 78899999999999
Q ss_pred eEEEEcCccch
Q 003437 276 RLVYMGSPVAL 286 (820)
Q Consensus 276 ~iv~~G~~~~~ 286 (820)
+++..|+++++
T Consensus 482 ~i~~~~~~~~~ 492 (506)
T PRK13549 482 KLKGDLINHNL 492 (506)
T ss_pred EEEEEeccccC
Confidence 99999987765
No 248
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=9.7e-39 Score=327.66 Aligned_cols=190 Identities=29% Similarity=0.441 Sum_probs=162.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+....+.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~ 68 (200)
T cd03217 1 LEIKDLHVSVGG------------KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD 68 (200)
T ss_pred CeEEEEEEEeCC------------EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCc
Confidence 578999999853 24999999999999999999999999999999999985223578999999998864
Q ss_pred c---c-ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 128 S---Y-MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 128 ~---~-~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
. . .+..++|++|++.+++.+|+++++. . . .+.|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~-~----~~~LS~G~ 109 (200)
T cd03217 69 LPPEERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------Y-V----NEGFSGGE 109 (200)
T ss_pred CCHHHHhhCcEEEeecChhhccCccHHHHHh----------------------------------h-c----cccCCHHH
Confidence 2 1 2345899999999898888887650 0 1 12599999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHh-hcCEEEEEeCCeEEEEcC
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQM-LLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~-~~D~v~lL~~G~iv~~G~ 282 (820)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.. +||++++|++|++++.|+
T Consensus 110 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~-~~~~~~d~i~~l~~G~i~~~~~ 188 (200)
T cd03217 110 KKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRL-LDYIKPDRVHVLYDGRIVKSGD 188 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhhCCEEEEEECCEEEEEcc
Confidence 999999999999999999999999999999999999999998779999999999974 666 799999999999999994
Q ss_pred ccchhhhh
Q 003437 283 PVALPAHL 290 (820)
Q Consensus 283 ~~~~~~~f 290 (820)
. ++...+
T Consensus 189 ~-~~~~~~ 195 (200)
T cd03217 189 K-ELALEI 195 (200)
T ss_pred H-HHHhhh
Confidence 4 454444
No 249
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=8.3e-39 Score=328.38 Aligned_cols=196 Identities=27% Similarity=0.377 Sum_probs=171.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||++.|++ +.+|+|+|++|++||+++|+|+||||||||+++|+|+++ +.+|+|.++|.++..
T Consensus 1 l~i~~l~~~~~~------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (201)
T cd03231 1 LEADELTCERDG------------RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDF 66 (201)
T ss_pred CEEEEEEEEeCC------------ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 578999999853 248999999999999999999999999999999999885 468999999998743
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 128 --SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 128 --~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
...++.++|++|++.+++.+||+||+.+.... . ..++++++++.+||.+..++.+. .|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 132 (201)
T cd03231 67 QRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPVA-----QLSAGQQR 132 (201)
T ss_pred ccHHhhhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCchh-----hCCHHHHH
Confidence 23456789999999898899999999875321 1 24567899999999887777654 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
|++||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++.. ....||+++++
T Consensus 133 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~-~~~~~~~~~~~ 198 (201)
T cd03231 133 RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLG-LSEAGARELDL 198 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchh-hhhccceeEec
Confidence 9999999999999999999999999999999999999998789999999999875 67789999887
No 250
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4.4e-39 Score=345.11 Aligned_cols=215 Identities=21% Similarity=0.344 Sum_probs=180.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|... ...+|+|+|++|++||+++|+||||||||||+++|+|++. .+|+|+++|.++.
T Consensus 2 ~i~~~nls~~~~~~----------~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i~ 68 (275)
T cd03289 2 QMTVKDLTAKYTEG----------GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSWN 68 (275)
T ss_pred eEEEEEEEEEeCCC----------CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEhh
Confidence 48999999999532 1349999999999999999999999999999999999984 4799999999875
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------CCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGN------EGRR 197 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~------~~~~ 197 (820)
. ...++.++||+|++.+|+. ||+||+..... .+ .+++.++++.+||.+..+..++. +...
T Consensus 69 ~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~~------~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~ 137 (275)
T cd03289 69 SVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYGK------WS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGC 137 (275)
T ss_pred hCCHHHHhhhEEEECCCcccchh-hHHHHhhhccC------CC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCC
Confidence 3 2346679999999999985 99999964211 12 23567788889997655554431 1234
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.||||||||++|||||+.+|+||||||||++||+.+...+.+.|+++. .++|||+++|+++. +. .||||++|++|++
T Consensus 138 ~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~~-i~-~~dri~vl~~G~i 214 (275)
T cd03289 138 VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIEA-ML-ECQRFLVIEENKV 214 (275)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHHH-HH-hCCEEEEecCCeE
Confidence 699999999999999999999999999999999999999999999875 48999999999964 55 4999999999999
Q ss_pred EEEcCccchhh
Q 003437 278 VYMGSPVALPA 288 (820)
Q Consensus 278 v~~G~~~~~~~ 288 (820)
++.|+++++..
T Consensus 215 ~~~g~~~~l~~ 225 (275)
T cd03289 215 RQYDSIQKLLN 225 (275)
T ss_pred eecCCHHHHhh
Confidence 99999988864
No 251
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=7.9e-39 Score=334.08 Aligned_cols=202 Identities=26% Similarity=0.403 Sum_probs=170.3
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|.++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+ +++|+|.++|+++..
T Consensus 23 l~~~~~~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 88 (224)
T cd03220 23 LGILGRKGEVGE------------FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL 88 (224)
T ss_pred hhhhhhhhhcCC------------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh
Confidence 566666666643 459999999999999999999999999999999999875 468999999987531
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 003437 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRV 207 (820)
Q Consensus 128 ~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv 207 (820)
..+...+.+.+||+||+.+..... ..+..+.++++.++++.+||++..++.++ .||||||||+
T Consensus 89 ---------~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv 151 (224)
T cd03220 89 ---------LGLGGGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPVK-----TYSSGMKARL 151 (224)
T ss_pred ---------hcccccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHH
Confidence 111223456789999998876532 12344556678899999999888877765 6999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 208 SIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 208 ~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+++. +..++|++++|++|++++.|
T Consensus 152 ~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 152 AFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSS-IKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999998778999999999874 77889999999999998765
No 252
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=9.8e-39 Score=406.55 Aligned_cols=223 Identities=28% Similarity=0.448 Sum_probs=198.0
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.|+++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++
T Consensus 927 ~~L~I~nLsK~y~~~----------~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~dI 994 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS----------GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKDI 994 (2272)
T ss_pred ceEEEEeEEEEecCC----------CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 369999999999521 2359999999999999999999999999999999999985 4689999999998
Q ss_pred CCc--cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 126 TTS--YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 126 ~~~--~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
... ..++.+||++|++.+++.+||+||+.|.++++ +.+.++.+++++++++.+||++..|+.++ +|||||
T Consensus 995 ~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~~~~-----~LSGGq 1066 (2272)
T TIGR01257 995 ETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEEAQ-----DLSGGM 1066 (2272)
T ss_pred cchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHH
Confidence 532 24567899999999999999999999987765 23445566789999999999988888775 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
||||+||+||+.+|++|||||||+|||+.+++.+.++|++++ +|+|||++||+++ ++..+||||++|++|+++..|++
T Consensus 1067 KQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~ 1144 (2272)
T TIGR01257 1067 QRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQGRLYCSGTP 1144 (2272)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCH
Confidence 999999999999999999999999999999999999999995 5999999999997 47889999999999999999999
Q ss_pred cchhhhh
Q 003437 284 VALPAHL 290 (820)
Q Consensus 284 ~~~~~~f 290 (820)
.++.+.+
T Consensus 1145 ~~Lk~~~ 1151 (2272)
T TIGR01257 1145 LFLKNCF 1151 (2272)
T ss_pred HHHHHhc
Confidence 9887655
No 253
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.1e-39 Score=392.21 Aligned_cols=215 Identities=28% Similarity=0.424 Sum_probs=182.8
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+|+|+.. ++.+|+|+|++|++||.+||+||||||||||+|+|+|++. +.+|+|.+||.++
T Consensus 476 ~~I~~~~vsf~y~~~----------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i 543 (710)
T TIGR03796 476 GYVELRNITFGYSPL----------EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGIPR 543 (710)
T ss_pred CeEEEEEEEEecCCC----------CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEeH
Confidence 359999999999642 2459999999999999999999999999999999999985 4689999999998
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-------SATHTYIGNEG 195 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~ 195 (820)
.. ...++.++||+|++.+|+. |++|||.++. + ..+. +++.++++..|+. +..|+.+|+.+
T Consensus 544 ~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~----~-~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G 613 (710)
T TIGR03796 544 EEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWD----P-TIPD----ADLVRACKDAAIHDVITSRPGGYDAELAEGG 613 (710)
T ss_pred HHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCC----C-CCCH----HHHHHHHHHhCCHHHHHhCcCcccceeccCC
Confidence 54 3467889999999999986 9999998752 1 2233 3345555555554 35678888654
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
..||||||||++|||||+++|++||||||||+||+.+...+++.|++ .++|+|+++|+++. + ..||+|++|++|
T Consensus 614 -~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~-i-~~~D~Iivl~~G 687 (710)
T TIGR03796 614 -ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLST-I-RDCDEIIVLERG 687 (710)
T ss_pred -CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHH-H-HhCCEEEEEeCC
Confidence 67999999999999999999999999999999999999999999986 48999999999974 4 569999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+.+++.+
T Consensus 688 ~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 688 KVVQRGTHEELWA 700 (710)
T ss_pred EEEEecCHHHHHH
Confidence 9999999988864
No 254
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.1e-39 Score=320.39 Aligned_cols=171 Identities=34% Similarity=0.584 Sum_probs=154.3
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+++|+++.+||+++|+||||||||||+++|+|+.+ +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (173)
T cd03230 1 IEVRNLSKRYGK------------KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKK 66 (173)
T ss_pred CEEEEEEEEECC------------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEccc
Confidence 478999999853 248999999999999999999999999999999999875 468999999998753
Q ss_pred c--cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 128 S--YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 128 ~--~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
. ..++.++|++|++.+++.+||.||+. |||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~q 102 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQ 102 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHH
Confidence 2 34567899999999999899999863 9999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||++.. +..+||++++|++|++
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~-~~~~~d~i~~l~~g~i 173 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEE-AERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH-HHHhCCEEEEEeCCCC
Confidence 9999999999999999999999999999999999999998779999999999874 7778999999999974
No 255
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=2.4e-39 Score=382.14 Aligned_cols=219 Identities=32% Similarity=0.488 Sum_probs=186.2
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+|.|++ ++++|+|+|+++++||.+||+||||||||||+|.|.|++.+ .+|+|.+||+++
T Consensus 327 ~~I~f~~vsf~y~~-----------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg~dI 393 (567)
T COG1132 327 GSIEFENVSFSYPG-----------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGIDI 393 (567)
T ss_pred CeEEEEEEEEEcCC-----------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCEeh
Confidence 45999999999973 23599999999999999999999999999999999999854 689999999998
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHH-----HHHHHcCCCccccccccCCCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVY-----ELLDQLGLRSATHTYIGNEGRR 197 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~-----~~l~~lgL~~~~~~~ig~~~~~ 197 (820)
.. ...|+.++||+||+.+|.. ||+|||.++.. ..++++..+.++ +.++ .+++..||.+|+. ..
T Consensus 394 ~~i~~~~lr~~I~~V~Qd~~LF~~-TI~~NI~~g~~-----~at~eei~~a~k~a~~~d~I~--~lp~g~dt~vge~-G~ 464 (567)
T COG1132 394 RDISLDSLRKRIGIVSQDPLLFSG-TIRENIALGRP-----DATDEEIEEALKLANAHEFIA--NLPDGYDTIVGER-GV 464 (567)
T ss_pred hhcCHHHHHHhccEEcccceeecc-cHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCcccccceecCC-Cc
Confidence 64 3467889999999999985 99999998742 234444433332 2233 3355789999954 45
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.||||||||++||||++++|++|+||||||+||+.+...+.+.++++. +++|+|+++|+++. +.. ||+|++|++|++
T Consensus 465 ~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst-i~~-aD~IiVl~~G~i 541 (567)
T COG1132 465 NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST-IKN-ADRIIVLDNGRI 541 (567)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH-HHh-CCEEEEEECCEE
Confidence 799999999999999999999999999999999999999999999887 56899999999974 554 999999999999
Q ss_pred EEEcCccchhhh
Q 003437 278 VYMGSPVALPAH 289 (820)
Q Consensus 278 v~~G~~~~~~~~ 289 (820)
++.|+++++...
T Consensus 542 ~e~G~h~eLl~~ 553 (567)
T COG1132 542 VERGTHEELLAK 553 (567)
T ss_pred EEecCHHHHHHc
Confidence 999999998753
No 256
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=6.9e-39 Score=380.17 Aligned_cols=215 Identities=25% Similarity=0.434 Sum_probs=185.1
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++|++++|+.. +++|+|+|+++++||.+||+|+||||||||+|+|+|+++| .+|+|.+||.++
T Consensus 339 ~~i~~~~v~f~y~~~-----------~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~i 405 (592)
T PRK10790 339 GRIDIDNVSFAYRDD-----------NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL--TEGEIRLDGRPL 405 (592)
T ss_pred CeEEEEEEEEEeCCC-----------CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEh
Confidence 359999999999631 3499999999999999999999999999999999999854 579999999988
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-------SATHTYIGNEG 195 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~ 195 (820)
.. ...++.++||+|++.+|+. |++|||.++. ..+ ++++.++++.+|+. +..|+.+|+.
T Consensus 406 ~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~- 473 (592)
T PRK10790 406 SSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQ- 473 (592)
T ss_pred hhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccCC-
Confidence 64 3467889999999999997 9999998863 122 23466677777754 4567888764
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
...||||||||++|||||+.+|++|+||||||+||+.+...+.+.|+++.+ ++|+|+++|+++. ...||+|++|++|
T Consensus 474 g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~~--l~~~D~ii~l~~G 550 (592)
T PRK10790 474 GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLST--IVEADTILVLHRG 550 (592)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchHH--HHhCCEEEEEECC
Confidence 357999999999999999999999999999999999999999999999865 6999999999964 4569999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+.+++.+
T Consensus 551 ~i~~~G~~~~L~~ 563 (592)
T PRK10790 551 QAVEQGTHQQLLA 563 (592)
T ss_pred EEEEEcCHHHHHh
Confidence 9999999988853
No 257
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=7.7e-39 Score=341.17 Aligned_cols=234 Identities=32% Similarity=0.422 Sum_probs=202.7
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
+..|+.+||.+.|+-+.... ........++++||+++++||.++|+|.||||||||-.+|.+++.+ +|+|.|+|++
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~-~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~ 349 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFL-RRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQD 349 (534)
T ss_pred CceEEecceEEEEecCCccc-cccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCcc
Confidence 45699999999997653211 1122345699999999999999999999999999999999999853 5999999999
Q ss_pred CCCc------cccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 003437 125 VTTS------YMKMVSSYVMQDDQ--LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGR 196 (820)
Q Consensus 125 ~~~~------~~~~~~gyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~ 196 (820)
++.. ..|+.+-.|||||. |.|.+||.+-+.-++....+ ..++.++.+++.++|+++||+... -+++|
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~----r~RYP 424 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPAT----RNRYP 424 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhH----hhcCC
Confidence 8742 34566789999984 89999999999999887754 478899999999999999997532 23556
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.+.|||||||++|||||+.+|++++||||||+||..-+.+|+++|++|.+ .|.+-++++||.. .+..+||+|+||++|
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~G 503 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRDG 503 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeCC
Confidence 78999999999999999999999999999999999999999999999975 5999999999997 588999999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
+||++|+.++++.
T Consensus 504 kiVE~G~~~~if~ 516 (534)
T COG4172 504 KIVEQGPTEAVFA 516 (534)
T ss_pred EEeeeCCHHHHhc
Confidence 9999999988864
No 258
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.4e-38 Score=371.82 Aligned_cols=224 Identities=23% Similarity=0.407 Sum_probs=186.3
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEEC-CEe
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRID-GKP 124 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~-G~~ 124 (820)
..|+++||+++|.+.. ...+.+|+|+||+|++||+++|+||||||||||+|+|+|+++ +++|+|.++ |.+
T Consensus 278 ~~l~~~~l~~~~~~~~-------~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~ 348 (520)
T TIGR03269 278 PIIKVRNVSKRYISVD-------RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDE 348 (520)
T ss_pred ceEEEeccEEEeccCC-------CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCc
Confidence 3699999999995310 012359999999999999999999999999999999999985 468999996 642
Q ss_pred ---CCCc------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-----ccccc
Q 003437 125 ---VTTS------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-----ATHTY 190 (820)
Q Consensus 125 ---~~~~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~ 190 (820)
+... ..++.++|++|++.+++.+||.||+.+...+. .+.++.++++.++++.+||.+ ..++.
T Consensus 349 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 424 (520)
T TIGR03269 349 WVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY 424 (520)
T ss_pred cccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC
Confidence 2211 12456899999998999999999998764321 233334567889999999975 34555
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEE
Q 003437 191 IGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRI 269 (820)
Q Consensus 191 ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v 269 (820)
+ .+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++|||+.. +.++||++
T Consensus 425 ~-----~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~-~~~~~d~i 498 (520)
T TIGR03269 425 P-----DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDF-VLDVCDRA 498 (520)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHH-HHHhCCEE
Confidence 5 479999999999999999999999999999999999999999999999865 9999999999985 78899999
Q ss_pred EEEeCCeEEEEcCccchhh
Q 003437 270 IVLARGRLVYMGSPVALPA 288 (820)
Q Consensus 270 ~lL~~G~iv~~G~~~~~~~ 288 (820)
++|++|++++.|+++++..
T Consensus 499 ~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 499 ALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999998877643
No 259
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=6.4e-39 Score=378.55 Aligned_cols=217 Identities=31% Similarity=0.533 Sum_probs=186.4
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++. ++.+|+|+|+++++||.++|+||||||||||+|+|+|+.+ +.+|+|++||.++
T Consensus 337 ~~i~~~~v~f~y~~~----------~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--p~~G~I~i~g~~i 404 (574)
T PRK11160 337 VSLTLNNVSFTYPDQ----------PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD--PQQGEILLNGQPI 404 (574)
T ss_pred CeEEEEEEEEECCCC----------CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEh
Confidence 459999999999642 1359999999999999999999999999999999999885 4689999999988
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc------cccccccCCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS------ATHTYIGNEGR 196 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~------~~~~~ig~~~~ 196 (820)
.. ..+++.++||+|++.+|+. |++||+.++.. ..+ ++.+.++++.+++.+ ..||.+|+. .
T Consensus 405 ~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge~-g 473 (574)
T PRK11160 405 ADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAP-----NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGEG-G 473 (574)
T ss_pred hhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCC-----ccC----HHHHHHHHHHcCCHHHHcCccccCchhcCC-C
Confidence 64 3457789999999999986 99999987631 122 345677888888764 357888754 4
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..||||||||++|||+|+++|++|+|||||++||+.++..+.+.|+++. +++|+|+++|+++. + ..||+|++|++|+
T Consensus 474 ~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~-~-~~~d~i~~l~~G~ 550 (574)
T PRK11160 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG-L-EQFDRICVMDNGQ 550 (574)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH-H-HhCCEEEEEeCCe
Confidence 5799999999999999999999999999999999999999999999986 48999999999974 4 4699999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
+++.|+.+++.+
T Consensus 551 i~~~g~~~~l~~ 562 (574)
T PRK11160 551 IIEQGTHQELLA 562 (574)
T ss_pred EEEeCCHHHHHh
Confidence 999999888754
No 260
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.8e-39 Score=337.44 Aligned_cols=213 Identities=31% Similarity=0.459 Sum_probs=170.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|++++|++. +.+|+|+|++|++||+++|+||||||||||+++|+|+.+ +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~-----------~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~v~~~g~~~~~ 67 (236)
T cd03253 1 IEFENVTFAYDPG-----------RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD--VSSGSILIDGQDIRE 67 (236)
T ss_pred CEEEEEEEEeCCC-----------CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEhhh
Confidence 4789999998521 248999999999999999999999999999999999875 468999999998753
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCCCCC
Q 003437 128 ---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-------THTYIGNEGRR 197 (820)
Q Consensus 128 ---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~ig~~~~~ 197 (820)
...++.++|++|++.+++ .||+||+.+.... .+..+ +.+.++..++.+. .++.+ +..++
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~~ 136 (236)
T cd03253 68 VTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRPD-----ATDEE----VIEAAKAAQIHDKIMRFPDGYDTIV-GERGL 136 (236)
T ss_pred CCHHHHHhhEEEECCCChhhc-chHHHHHhhcCCC-----CCHHH----HHHHHHHcCcHHHHHhccccccchh-hcCCC
Confidence 224566899999998886 5999999875321 12211 2222333333221 11112 12245
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++++ |+|||+++|+++. +. .||++++|++|++
T Consensus 137 ~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~~-~~d~~~~l~~g~i 213 (236)
T cd03253 137 KLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLST-IV-NADKIIVLKDGRI 213 (236)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-HH-hCCEEEEEECCEE
Confidence 7999999999999999999999999999999999999999999999987 9999999999975 54 4999999999999
Q ss_pred EEEcCccchh
Q 003437 278 VYMGSPVALP 287 (820)
Q Consensus 278 v~~G~~~~~~ 287 (820)
++.|+.+++.
T Consensus 214 ~~~~~~~~~~ 223 (236)
T cd03253 214 VERGTHEELL 223 (236)
T ss_pred EeeCCHHHHh
Confidence 9988876554
No 261
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.9e-38 Score=336.57 Aligned_cols=202 Identities=28% Similarity=0.450 Sum_probs=173.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++ +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~~------------~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~---- 65 (251)
T PRK09544 4 LVSLENVSVSFGQ------------RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNG---- 65 (251)
T ss_pred EEEEeceEEEECC------------ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECC----
Confidence 5999999999953 249999999999999999999999999999999999885 4689999987
Q ss_pred CccccceEEEEccCCCCCCCC--CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPML--TVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~l--TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
+..++|++|++.+++.+ |+.+++.+.. ... .+++.++++.+||.+..++.+. .||||||
T Consensus 66 ----~~~i~~v~q~~~~~~~l~~~~~~~~~~~~------~~~----~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~ 126 (251)
T PRK09544 66 ----KLRIGYVPQKLYLDTTLPLTVNRFLRLRP------GTK----KEDILPALKRVQAGHLIDAPMQ-----KLSGGET 126 (251)
T ss_pred ----ccCEEEeccccccccccChhHHHHHhccc------ccc----HHHHHHHHHHcCChHHHhCChh-----hCCHHHH
Confidence 23589999998877753 7777764321 111 2457889999999887777654 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
|||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++. +.++||++++|+ |+++..|++
T Consensus 127 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~-i~~~~d~i~~l~-~~i~~~g~~ 204 (251)
T PRK09544 127 QRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHL-VMAKTDEVLCLN-HHICCSGTP 204 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEC-CceEeeCCH
Confidence 9999999999999999999999999999999999999999875 8999999999984 778999999996 479999988
Q ss_pred cchh
Q 003437 284 VALP 287 (820)
Q Consensus 284 ~~~~ 287 (820)
+++.
T Consensus 205 ~~~~ 208 (251)
T PRK09544 205 EVVS 208 (251)
T ss_pred HHHh
Confidence 7653
No 262
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=371.45 Aligned_cols=217 Identities=23% Similarity=0.414 Sum_probs=182.9
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.+. .+|+|+||++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++
T Consensus 264 ~~l~~~~l~~~~~--------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~ 327 (510)
T PRK09700 264 TVFEVRNVTSRDR--------------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDI 327 (510)
T ss_pred cEEEEeCccccCC--------------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCEEC
Confidence 3599999997641 28999999999999999999999999999999999885 4689999999987
Q ss_pred CCc----cccceEEEEccC---CCCCCCCCHHHHHHHHHHhc---CCC--C-CCHHHHHHHHHHHHHHcCCC-ccccccc
Q 003437 126 TTS----YMKMVSSYVMQD---DQLFPMLTVFETFMFAAEVR---LPP--S-ISRDEKKKRVYELLDQLGLR-SATHTYI 191 (820)
Q Consensus 126 ~~~----~~~~~~gyv~Q~---~~l~~~lTV~e~l~~~~~~~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~~~i 191 (820)
... ..++.++||+|+ ..+++.+||.||+.+....+ ... . ......+++++++++.+||. +..++.+
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 407 (510)
T PRK09700 328 SPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI 407 (510)
T ss_pred CCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc
Confidence 531 124568999998 46889999999998764321 000 0 12233346788999999996 6777777
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEE
Q 003437 192 GNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIV 271 (820)
Q Consensus 192 g~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 271 (820)
+ .|||||||||+||++|+.+|++|||||||+|||+.++..++++|++++++|.|||++|||+.. +..+||++++
T Consensus 408 ~-----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~-~~~~~d~i~~ 481 (510)
T PRK09700 408 T-----ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPE-IITVCDRIAV 481 (510)
T ss_pred c-----cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-HHhhCCEEEE
Confidence 5 699999999999999999999999999999999999999999999998889999999999974 7889999999
Q ss_pred EeCCeEEEEcCcc
Q 003437 272 LARGRLVYMGSPV 284 (820)
Q Consensus 272 L~~G~iv~~G~~~ 284 (820)
|++|+++..++..
T Consensus 482 l~~G~i~~~~~~~ 494 (510)
T PRK09700 482 FCEGRLTQILTNR 494 (510)
T ss_pred EECCEEEEEecCc
Confidence 9999999888663
No 263
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-38 Score=334.77 Aligned_cols=221 Identities=22% Similarity=0.305 Sum_probs=185.4
Q ss_pred eEEEEEEEEEECcccccc--------cccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEE
Q 003437 47 GLEFKNLSYSIMKKQKKD--------GVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSV 118 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~--------~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I 118 (820)
.++++||+++|.....+. +......+.+|+++|++|++||+++|+||||||||||+++|+|+++ +.+|+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~I 81 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGKV 81 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEE
Confidence 489999999986532110 0112244679999999999999999999999999999999999885 467999
Q ss_pred EECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 119 RIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 119 ~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
.++|. +++++|+..+.+.+||.||+.+..... ..+.++..+.++++++.++|.+..++.++ .
T Consensus 82 ~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 143 (264)
T PRK13546 82 DRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPVK-----K 143 (264)
T ss_pred EECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcc-----c
Confidence 99985 346777777778899999998765432 23445556677889999999887777654 6
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
|||||||||+||++|+.+|++|||||||+|||+.++..+++.|.++++.|+|||+++|++.. +.++||++++|++|+++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~-i~~~~d~i~~l~~G~i~ 222 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQ-VRQFCTKIAWIEGGKLK 222 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-HHHHcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999998789999999999874 77889999999999999
Q ss_pred EEcCccchhh
Q 003437 279 YMGSPVALPA 288 (820)
Q Consensus 279 ~~G~~~~~~~ 288 (820)
..|+++++..
T Consensus 223 ~~g~~~~~~~ 232 (264)
T PRK13546 223 DYGELDDVLP 232 (264)
T ss_pred EeCCHHHHHH
Confidence 9999877654
No 264
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.9e-38 Score=327.14 Aligned_cols=199 Identities=26% Similarity=0.393 Sum_probs=170.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+ +++|+|+++|.++.
T Consensus 2 ~l~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (207)
T PRK13539 2 MLEGEDLACVRGG------------RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDID 67 (207)
T ss_pred EEEEEeEEEEECC------------eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCc
Confidence 4899999999853 248999999999999999999999999999999999875 46899999998864
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
....++.++|++|++.+++.+||+||+.+....+. .. .+++.++++.+||.+..++.++ .||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPFG-----YLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCChh-----hcCHHHHHH
Confidence 22245678999999888888999999988654321 11 2357899999999876666654 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
++||++|+.+|++|||||||+|||+.+...+.+.|++++++|+|||++||++.. +.. |+++.+..
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~--~~~~~~~~ 200 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLG-LPG--ARELDLGP 200 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh-hcc--CcEEeecC
Confidence 999999999999999999999999999999999999998889999999999874 554 88877744
No 265
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=6.1e-39 Score=387.15 Aligned_cols=216 Identities=28% Similarity=0.455 Sum_probs=181.0
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+|+|++.. ++.+|+|+|++|+|||.++|+||||||||||+|+|+|+++ +.+|+|.+||+++
T Consensus 477 ~~I~~~nVsf~Y~~~~---------~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~i 545 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRP---------DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ--PTGGQVLLDGVPL 545 (711)
T ss_pred CeEEEEEEEEECCCCC---------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEEH
Confidence 3599999999996421 2469999999999999999999999999999999999985 4689999999998
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-------SATHTYIGNEG 195 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~ 195 (820)
.. ...++.++||+|++.+|+. |++|||.++.. ..+ ++++.++++..++. +..||.+|+.
T Consensus 546 ~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~-----~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~- 614 (711)
T TIGR00958 546 VQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLT-----DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEK- 614 (711)
T ss_pred HhcCHHHHHhhceEEecCcccccc-CHHHHHhcCCC-----CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCC-
Confidence 64 3467789999999999986 99999987631 122 23455666666654 3468888764
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
...||||||||++|||||+++|+|||||||||+||+.+...+.+ .. ..+++|+|+++|+++. .+.||+|++|++|
T Consensus 615 G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~--i~~aD~IivL~~G 689 (711)
T TIGR00958 615 GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLST--VERADQILVLKKG 689 (711)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHH--HHhCCEEEEEECC
Confidence 35799999999999999999999999999999999999999988 22 2358999999999974 4569999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+.+++.+
T Consensus 690 ~ive~Gt~~eL~~ 702 (711)
T TIGR00958 690 SVVEMGTHKQLME 702 (711)
T ss_pred EEEEeeCHHHHHh
Confidence 9999999988764
No 266
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=3.7e-38 Score=328.80 Aligned_cols=210 Identities=28% Similarity=0.410 Sum_probs=171.9
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEEC--CE--
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRID--GK-- 123 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~--G~-- 123 (820)
|+++||++.|+.+... ...+.+|+|+|++|++||+++|+||||||||||+++|+|+++ +++|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~~-----~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~~ 74 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQG-----GVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAWV 74 (224)
T ss_pred EEEEeeEEEeecccCC-----CcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCcc
Confidence 7899999999532100 001359999999999999999999999999999999999885 467999998 43
Q ss_pred eCCCc---c----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCC
Q 003437 124 PVTTS---Y----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEG 195 (820)
Q Consensus 124 ~~~~~---~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~ 195 (820)
++... . .++.++|++|++.+++.+||+|++.+..... +...++..+++.++++.+||.+. .+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 147 (224)
T TIGR02324 75 DLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPP---- 147 (224)
T ss_pred chhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCc----
Confidence 43211 1 1346899999999999999999998865432 23344455678899999999763 35544
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
.+||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++.. +..+||+++.+.
T Consensus 148 -~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~-~~~~~d~i~~~~ 223 (224)
T TIGR02324 148 -ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEV-RELVADRVMDVT 223 (224)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcceeEecC
Confidence 4799999999999999999999999999999999999999999999998789999999999764 677899998763
No 267
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2e-38 Score=368.91 Aligned_cols=224 Identities=25% Similarity=0.391 Sum_probs=186.3
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++|++++|... +++.+|+|+||++++||+++|+||||||||||||+|+|+++| +.+|+|.++|+++
T Consensus 256 ~~l~~~~l~~~~~~~---------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~ 325 (500)
T TIGR02633 256 VILEARNLTCWDVIN---------PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPV 325 (500)
T ss_pred ceEEEeCCccccccc---------ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEEC
Confidence 369999999987321 013499999999999999999999999999999999999853 3589999999987
Q ss_pred CCc----cccceEEEEccCC---CCCCCCCHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHcCCCc-cccccccCCC
Q 003437 126 TTS----YMKMVSSYVMQDD---QLFPMLTVFETFMFAAEVRLP--PSISRDEKKKRVYELLDQLGLRS-ATHTYIGNEG 195 (820)
Q Consensus 126 ~~~----~~~~~~gyv~Q~~---~l~~~lTV~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~ 195 (820)
... ..++.++||+|+. .+++.+||+||+.+...-... ......+.+++++++++.++|.+ ..++.++
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 402 (500)
T TIGR02633 326 DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG--- 402 (500)
T ss_pred CCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccc---
Confidence 531 2345689999995 588999999999876421110 01233444567899999999974 5677765
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..++++|++++++|.|||++|||++. +.++||++++|++|
T Consensus 403 --~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~-~~~~~d~v~~l~~G 479 (500)
T TIGR02633 403 --RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAE-VLGLSDRVLVIGEG 479 (500)
T ss_pred --cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHH-HHHhCCEEEEEECC
Confidence 699999999999999999999999999999999999999999999998889999999999984 88899999999999
Q ss_pred eEEEEcCccc
Q 003437 276 RLVYMGSPVA 285 (820)
Q Consensus 276 ~iv~~G~~~~ 285 (820)
+++..++.++
T Consensus 480 ~i~~~~~~~~ 489 (500)
T TIGR02633 480 KLKGDFVNHA 489 (500)
T ss_pred EEEEEEcccc
Confidence 9998776543
No 268
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=8.8e-39 Score=385.73 Aligned_cols=217 Identities=31% Similarity=0.499 Sum_probs=185.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+|+|++. .+++|+|+|++|++||.+||+|+||||||||+|+|+|++. +.+|+|.+||.++.
T Consensus 463 ~I~~~~vsf~Y~~~----------~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~l~ 530 (694)
T TIGR03375 463 EIEFRNVSFAYPGQ----------ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGVDIR 530 (694)
T ss_pred eEEEEEEEEEeCCC----------CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEhh
Confidence 59999999999632 2359999999999999999999999999999999999985 46899999999986
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYIGNEGR 196 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~ 196 (820)
. ...++.++||+|++.+|+. |++|||.++.. ..+++ ++.++++..|+ ++..||.+|+.+
T Consensus 531 ~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~-----~~~~~----~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G- 599 (694)
T TIGR03375 531 QIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGAP-----YADDE----EILRAAELAGVTEFVRRHPDGLDMQIGERG- 599 (694)
T ss_pred hCCHHHHHhccEEECCChhhhhh-hHHHHHhCCCC-----CCCHH----HHHHHHHHcChHHHHHhCcccccceecCCC-
Confidence 4 3467889999999999986 99999987521 22333 34455555544 445788888654
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..||||||||++|||||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+++|+++. .+.||+|++|++|+
T Consensus 600 ~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~~--~~~~D~iivl~~G~ 676 (694)
T TIGR03375 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTSL--LDLVDRIIVMDNGR 676 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHH--HHhCCEEEEEeCCE
Confidence 57999999999999999999999999999999999999999999999864 7999999999974 46799999999999
Q ss_pred EEEEcCccchhhh
Q 003437 277 LVYMGSPVALPAH 289 (820)
Q Consensus 277 iv~~G~~~~~~~~ 289 (820)
+++.|+.+++++.
T Consensus 677 i~e~G~~~eLl~~ 689 (694)
T TIGR03375 677 IVADGPKDQVLEA 689 (694)
T ss_pred EEeeCCHHHHHHH
Confidence 9999999888754
No 269
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=3.7e-38 Score=322.77 Aligned_cols=195 Identities=27% Similarity=0.371 Sum_probs=167.1
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+|+|+++.+||+++|+||||||||||+++|+|+++ +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (198)
T TIGR01189 1 LAARNLACSRGE------------RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAE 66 (198)
T ss_pred CEEEEEEEEECC------------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEccc
Confidence 578999999853 249999999999999999999999999999999999875 468999999998753
Q ss_pred c--cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 128 S--YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 128 ~--~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
. ..++.++|++|++.+++.+||.||+.+....+. . + .+++.++++.+||.+..++.++ .|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----~-~-~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 134 (198)
T TIGR01189 67 QRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG-----G-A-QRTIEDALAAVGLTGFEDLPAA-----QLSAGQQR 134 (198)
T ss_pred chHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC-----C-c-HHHHHHHHHHcCCHHHhcCChh-----hcCHHHHH
Confidence 2 234568999999888888999999988654321 1 1 3467889999999887777765 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEE
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIV 271 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 271 (820)
||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||++.. + .+++++.
T Consensus 135 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~-~--~~~~~~~ 197 (198)
T TIGR01189 135 RLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG-L--VEARELR 197 (198)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc-c--cceEEee
Confidence 9999999999999999999999999999999999999998889999999999864 2 4677764
No 270
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.1e-38 Score=329.86 Aligned_cols=209 Identities=29% Similarity=0.425 Sum_probs=171.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+.. .+.+|+|+||++++||+++|+||||||||||+++|+|+.. +.+|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~~----------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 69 (221)
T cd03244 2 DIEFKNVSLRYRPN----------LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE--LSSGSILIDGVDIS 69 (221)
T ss_pred cEEEEEEEEecCCC----------CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhH
Confidence 38999999998532 1359999999999999999999999999999999999875 46899999999875
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccc-------cccCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHT-------YIGNEGR 196 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-------~ig~~~~ 196 (820)
. ...++.++|++|++.+++ .||+||+.+... .. .+++.+.++.+++.+..++ .. +..+
T Consensus 70 ~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~------~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~ 137 (221)
T cd03244 70 KIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFGE------YS----DEELWQALERVGLKEFVESLPGGLDTVV-EEGG 137 (221)
T ss_pred hCCHHHHhhhEEEECCCCcccc-chHHHHhCcCCC------CC----HHHHHHHHHHhCcHHHHHhccccccccc-ccCC
Confidence 3 234567899999998876 599999864311 12 2345566677776554322 11 1245
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||+++|+++. +. .||++++|++|+
T Consensus 138 ~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~-~~d~i~~l~~g~ 214 (221)
T cd03244 138 ENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDT-II-DSDRILVLDKGR 214 (221)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-Hh-hCCEEEEEECCe
Confidence 68999999999999999999999999999999999999999999999865 6899999999975 55 499999999999
Q ss_pred EEEEcC
Q 003437 277 LVYMGS 282 (820)
Q Consensus 277 iv~~G~ 282 (820)
+++.|+
T Consensus 215 ~~~~~~ 220 (221)
T cd03244 215 VVEFDS 220 (221)
T ss_pred EEecCC
Confidence 998875
No 271
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-38 Score=318.77 Aligned_cols=172 Identities=38% Similarity=0.581 Sum_probs=154.3
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+++|+++++||+++|+||||||||||+|+|+|+++ +++|+|.++|.++..
T Consensus 1 i~~~~l~~~~~~------------~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (178)
T cd03229 1 LELKNVSKRYGQ------------KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTD 66 (178)
T ss_pred CEEEEEEEEECC------------eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 478999999853 249999999999999999999999999999999999875 468999999998753
Q ss_pred -----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 128 -----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 128 -----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
...++.++|++|++.+++.+|++||+.+. ||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G 104 (178)
T cd03229 67 LEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGG 104 (178)
T ss_pred cchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHH
Confidence 13456789999999988889999987531 9999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++.. +..+||++++|++|+
T Consensus 105 ~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~g~ 178 (178)
T cd03229 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDE-AARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEEeCCC
Confidence 999999999999999999999999999999999999999999887 8999999999974 777899999999885
No 272
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-38 Score=353.84 Aligned_cols=216 Identities=22% Similarity=0.319 Sum_probs=181.8
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...++++||++.|.++ ..+.+|+|+||+|++||+++|+|||||||||||++|+|+++ +++|+|.++|.+
T Consensus 19 ~~mL~lknL~~~~~~~---------~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~ 87 (549)
T PRK13545 19 KPFDKLKDLFFRSKDG---------EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSA 87 (549)
T ss_pred cceeEEEEEEEecCCC---------ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEe
Confidence 3458888888877542 12459999999999999999999999999999999999885 468999999975
Q ss_pred CCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 125 VTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 125 ~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
. ++.+...+.+.+||+||+.+..... ..+.++..+++.++++.+||.+..++.++ .||||||
T Consensus 88 ~----------~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~~-----~LSGGQr 149 (549)
T PRK13545 88 A----------LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPVK-----TYSSGMK 149 (549)
T ss_pred e----------eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCcc-----cCCHHHH
Confidence 2 1222345667789999998865432 23445556678899999999887777764 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
|||+|||||+.+|++|||||||+|||+.++..+++.|++++++|.|||+++|+++. +.++||++++|++|++++.|+++
T Consensus 150 QRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~-i~~l~DrIivL~~GkIv~~G~~~ 228 (549)
T PRK13545 150 SRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQ-VKSFCTKALWLHYGQVKEYGDIK 228 (549)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH-HHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999998789999999999974 78899999999999999999998
Q ss_pred chhhhh
Q 003437 285 ALPAHL 290 (820)
Q Consensus 285 ~~~~~f 290 (820)
++...+
T Consensus 229 el~~~~ 234 (549)
T PRK13545 229 EVVDHY 234 (549)
T ss_pred HHHhhH
Confidence 876543
No 273
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.8e-38 Score=318.47 Aligned_cols=172 Identities=31% Similarity=0.502 Sum_probs=154.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++|++++| +|+++|+++++||+++|+||||||||||+++|+|+++ +++|+|.++|+++.
T Consensus 4 ~l~~~~l~~~~----------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (182)
T cd03215 4 VLEVRGLSVKG----------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVT 65 (182)
T ss_pred EEEEeccEEEe----------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECC
Confidence 48999999875 7999999999999999999999999999999999885 46899999999875
Q ss_pred Cc----cccceEEEEccCC---CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 003437 127 TS----YMKMVSSYVMQDD---QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 127 ~~----~~~~~~gyv~Q~~---~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~L 199 (820)
.. ..++.++|++|++ .+++.+|++||+.+... |
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------L 105 (182)
T cd03215 66 RRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------L 105 (182)
T ss_pred ccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------c
Confidence 42 2356789999984 57888999999876420 9
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
|||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|+++ .+.++||++++|++|++
T Consensus 106 S~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 106 SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred CHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999999999999999999999877999999999987 48889999999999974
No 274
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=9.8e-39 Score=333.61 Aligned_cols=213 Identities=29% Similarity=0.467 Sum_probs=171.3
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...|+++|++++|+++. .+.+|+++|++|++||+++|+||||||||||+++|+|+++ +++|+|.++|++
T Consensus 9 ~~~l~~~~l~~~~~~~~---------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~ 77 (226)
T cd03248 9 KGIVKFQNVTFAYPTRP---------DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ--PQGGQVLLDGKP 77 (226)
T ss_pred CceEEEEEEEEEeCCCC---------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCCc
Confidence 34599999999996421 1359999999999999999999999999999999999885 468999999987
Q ss_pred CCC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc--CCCccccccccCCCCCCC
Q 003437 125 VTT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQL--GLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 125 ~~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~ig~~~~~~L 199 (820)
+.. ...++.++|++|++.+++ .||+||+.++.................++++++.+ |+.+..+..+ +.|
T Consensus 78 ~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~-----~~L 151 (226)
T cd03248 78 ISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKG-----SQL 151 (226)
T ss_pred hHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCC-----CcC
Confidence 643 123466899999998886 59999998754211000000011122356788888 7776665554 479
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++. +. .||++++|++|++
T Consensus 152 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~-~~d~i~~l~~g~i 226 (226)
T cd03248 152 SGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLST-VE-RADQILVLDGGRI 226 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHH-HH-hCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999999999875 6899999999985 55 5999999999874
No 275
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=9.7e-39 Score=386.15 Aligned_cols=215 Identities=24% Similarity=0.422 Sum_probs=182.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+|+|+. ++++|+|+|++|++||.+||+||||||||||+|+|+|++. +++|+|++||.++.
T Consensus 473 ~I~~~~vsf~y~~-----------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~~i~ 539 (708)
T TIGR01193 473 DIVINDVSYSYGY-----------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFSLK 539 (708)
T ss_pred cEEEEEEEEEcCC-----------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCEEHH
Confidence 5999999999952 1359999999999999999999999999999999999985 46899999999875
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYIGNEGR 196 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~ 196 (820)
. ...++.+|||+|++.+|+. |++|||.++.. ...+. +++.++++..|+ +...|+.+|+. .
T Consensus 540 ~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~----~~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~-G 609 (708)
T TIGR01193 540 DIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK----ENVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEE-G 609 (708)
T ss_pred HcCHHHHHHheEEEecCceehhH-HHHHHHhccCC----CCCCH----HHHHHHHHHhCCHHHHHhcccccCcEecCC-C
Confidence 3 3467889999999999987 99999988631 12233 334455555544 34568888764 4
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..||||||||++|||||+++|++||||||||+||+.+...+++.|+++ +|+|+|+++|+++. .+.||+|++|++|+
T Consensus 610 ~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~--~~~~D~i~~l~~G~ 685 (708)
T TIGR01193 610 SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSV--AKQSDKIIVLDHGK 685 (708)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHH--HHcCCEEEEEECCE
Confidence 679999999999999999999999999999999999999999999985 47999999999974 46799999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
+++.|+.+++.+
T Consensus 686 i~~~G~~~~L~~ 697 (708)
T TIGR01193 686 IIEQGSHDELLD 697 (708)
T ss_pred EEEECCHHHHHh
Confidence 999999988764
No 276
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-38 Score=313.58 Aligned_cols=233 Identities=30% Similarity=0.382 Sum_probs=202.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++++.++ +.||++||++|++||+.+||||||||||||.++|+|.-....++|+|+++|+++.
T Consensus 3 ~L~I~dLhv~v~~~-----------keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~ 71 (251)
T COG0396 3 MLEIKDLHVEVEGK-----------KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDIL 71 (251)
T ss_pred eeEEeeeEEEecCc-----------hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccc
Confidence 59999999998642 3699999999999999999999999999999999997655668999999999987
Q ss_pred Cc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCh
Q 003437 127 TS----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGRRGVSG 201 (820)
Q Consensus 127 ~~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSG 201 (820)
.. ..+.-+...+|.|.=+|..|+.+.|..+.+.+....-...+..+.+++.++.+++.+ .+++.+.. ++||
T Consensus 72 ~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~----GFSG 147 (251)
T COG0396 72 ELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNE----GFSG 147 (251)
T ss_pred cCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCC----CcCc
Confidence 53 234556788999999999999999998877643211113456778999999999987 67888874 8999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhc--CEEEEEeCCeEEE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLL--DRIIVLARGRLVY 279 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~--D~v~lL~~G~iv~ 279 (820)
|||||..|+..++.+|++.|||||-||||..+-+.|-+.+.++.++|.+++++||... +..+. |+|.+|.+|+|+.
T Consensus 148 GEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~r--ll~~i~pD~vhvl~~GrIv~ 225 (251)
T COG0396 148 GEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQR--LLDYIKPDKVHVLYDGRIVK 225 (251)
T ss_pred chHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHH--HHhhcCCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999999999999999999999975 55665 9999999999999
Q ss_pred EcCccchhhhhhccCCCC
Q 003437 280 MGSPVALPAHLAGFGRTV 297 (820)
Q Consensus 280 ~G~~~~~~~~f~~~g~~~ 297 (820)
.|.+ ++..+++..|+.|
T Consensus 226 sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 226 SGDP-ELAEELEEKGYDW 242 (251)
T ss_pred cCCH-HHHHHHHHhchHH
Confidence 9999 8999998888754
No 277
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.3e-38 Score=367.50 Aligned_cols=210 Identities=23% Similarity=0.295 Sum_probs=179.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||||+|+|+++ +++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~~------------~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~--p~~G~i~~~~~~~~ 68 (490)
T PRK10938 3 SLQISQGTFRLSD------------TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP--LLSGERQSQFSHIT 68 (490)
T ss_pred eEEEEeEEEEcCC------------eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCceEEECCcccc
Confidence 4999999999953 249999999999999999999999999999999999885 46899999998764
Q ss_pred Cc---cccceEEEEccCCCC--C-C-----CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 003437 127 TS---YMKMVSSYVMQDDQL--F-P-----MLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEG 195 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~l--~-~-----~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~ 195 (820)
.. ..++.++|++|++.+ + + .+||+|++.+. .+..++++++++.+||++..++.++
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~--- 134 (490)
T PRK10938 69 RLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRFK--- 134 (490)
T ss_pred cCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCcc---
Confidence 21 223558999998642 1 1 46888877532 1234678899999999888777775
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++.. +.++||++++|++|
T Consensus 135 --~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~-~~~~~d~v~~l~~G 211 (490)
T PRK10938 135 --YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDE-IPDFVQFAGVLADC 211 (490)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHH-HHhhCCEEEEEECC
Confidence 699999999999999999999999999999999999999999999998889999999999974 78899999999999
Q ss_pred eEEEEcCccchh
Q 003437 276 RLVYMGSPVALP 287 (820)
Q Consensus 276 ~iv~~G~~~~~~ 287 (820)
+++..|+++++.
T Consensus 212 ~i~~~~~~~~~~ 223 (490)
T PRK10938 212 TLAETGEREEIL 223 (490)
T ss_pred EEEEeCCHHHHh
Confidence 999999877653
No 278
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-39 Score=329.46 Aligned_cols=196 Identities=28% Similarity=0.462 Sum_probs=174.9
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC-------ccccceEEEEccCCCCCCCCC
Q 003437 76 HDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT-------SYMKMVSSYVMQDDQLFPMLT 148 (820)
Q Consensus 76 ~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~-------~~~~~~~gyv~Q~~~l~~~lT 148 (820)
=++++..+.-.++||.|+||||||||+|+|+|+++ |++|.|.+||+.+.+ ...++++||||||..|||++|
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r--PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTR--PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCC--ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 35677776657999999999999999999999986 468999999987643 135678999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 003437 149 VFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSG 228 (820)
Q Consensus 149 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsg 228 (820)
|+.||.|+.... .....+++.+.||++|.++++.. .|||||||||+|+|||++.|++|+||||.+.
T Consensus 93 VrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P~-----~LSGGEkQRVAIGRALLt~P~LLLmDEPLaS 158 (352)
T COG4148 93 VRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYPG-----TLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred Eecchhhhhccc---------chHhHHHHHHHhCcHHHHhhCCC-----ccCcchhhHHHHHHHHhcCCCeeeecCchhh
Confidence 999999986421 34567889999999999988765 6999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchhh
Q 003437 229 LDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPA 288 (820)
Q Consensus 229 LD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 288 (820)
||..-+.+++-.|.+|.++ +..|+.+||.+. ++.+++|+|++|++|++..+|+.+++.+
T Consensus 159 LD~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 159 LDLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred cccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 9999999999999999976 889999999997 5999999999999999999999998864
No 279
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=3.4e-38 Score=373.92 Aligned_cols=214 Identities=29% Similarity=0.465 Sum_probs=181.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+|+|+.+ +.+|+|+|++++|||.++|+|+||||||||+|+|+|+.+| .+|+|.+||.++.
T Consensus 334 ~I~~~~vsf~y~~~-----------~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p--~~G~I~i~g~~i~ 400 (588)
T PRK13657 334 AVEFDDVSFSYDNS-----------RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP--QSGRILIDGTDIR 400 (588)
T ss_pred eEEEEEEEEEeCCC-----------CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEEhh
Confidence 59999999999631 2499999999999999999999999999999999999854 6899999999886
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYIGNEGR 196 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~ 196 (820)
. ...++.++||+|++.+|+. |++|||.++. + ..+++ ++.++++.+|+ ++..|+.+|+. .
T Consensus 401 ~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~-~~~d~----~i~~al~~~~l~~~i~~lp~gldt~i~~~-g 469 (588)
T PRK13657 401 TVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGR----P-DATDE----EMRAAAERAQAHDFIERKPDGYDTVVGER-G 469 (588)
T ss_pred hCCHHHHHhheEEEecCcccccc-cHHHHHhcCC----C-CCCHH----HHHHHHHHhCHHHHHHhCcccccchhcCC-C
Confidence 4 2456789999999999986 9999998752 1 22332 34455555554 34567888764 4
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..||||||||++|||+|+++|++|+||||||+||+.+...+++.|+++. +++|+|++||+++. .+.+|+|++|++|+
T Consensus 470 ~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~~--~~~~D~ii~l~~G~ 546 (588)
T PRK13657 470 RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLST--VRNADRILVFDNGR 546 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHHH--HHhCCEEEEEECCE
Confidence 5799999999999999999999999999999999999999999999885 47999999999863 56799999999999
Q ss_pred EEEEcCccchh
Q 003437 277 LVYMGSPVALP 287 (820)
Q Consensus 277 iv~~G~~~~~~ 287 (820)
++..|+.+++.
T Consensus 547 i~~~g~~~~l~ 557 (588)
T PRK13657 547 VVESGSFDELV 557 (588)
T ss_pred EEEeCCHHHHH
Confidence 99999988775
No 280
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=5.5e-38 Score=314.69 Aligned_cols=170 Identities=33% Similarity=0.561 Sum_probs=151.5
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|++++|++. ++.+++++|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|.++..
T Consensus 1 i~~~~l~~~~~~~----------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 68 (173)
T cd03246 1 LEVENVSFRYPGA----------EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR--PTSGRVRLDGADISQ 68 (173)
T ss_pred CEEEEEEEEcCCC----------CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEEccc
Confidence 4789999998532 1359999999999999999999999999999999999885 468999999998753
Q ss_pred c---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 128 S---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 128 ~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
. ..++.++|++|++.+++. ||+||+ ||||||
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~~-tv~~~l---------------------------------------------LS~G~~ 102 (173)
T cd03246 69 WDPNELGDHVGYLPQDDELFSG-SIAENI---------------------------------------------LSGGQR 102 (173)
T ss_pred CCHHHHHhheEEECCCCccccC-cHHHHC---------------------------------------------cCHHHH
Confidence 2 245678999999988875 999886 999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+++. + ..||++++|++|++
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~-~-~~~d~v~~l~~G~i 173 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPET-L-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEEECCCC
Confidence 99999999999999999999999999999999999999998789999999999974 5 57999999999974
No 281
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=7.2e-38 Score=364.15 Aligned_cols=216 Identities=24% Similarity=0.392 Sum_probs=182.9
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++ .+|+|+||+|.+||+++|+||||||||||+|+|+|+++ +++|+|.++|+++
T Consensus 256 ~~l~~~~l~~-----------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i 316 (501)
T PRK10762 256 VRLKVDNLSG-----------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP--RTSGYVTLDGHEV 316 (501)
T ss_pred cEEEEeCccc-----------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 3588888873 17999999999999999999999999999999999985 4689999999987
Q ss_pred CCc----cccceEEEEccCC---CCCCCCCHHHHHHHHHHhcCC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCC
Q 003437 126 TTS----YMKMVSSYVMQDD---QLFPMLTVFETFMFAAEVRLP---PSISRDEKKKRVYELLDQLGLR-SATHTYIGNE 194 (820)
Q Consensus 126 ~~~----~~~~~~gyv~Q~~---~l~~~lTV~e~l~~~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~ 194 (820)
... ..++.+|||+|++ .+++.+||.||+.+....... .....++..++++++++.+||. +..++.++
T Consensus 317 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 394 (501)
T PRK10762 317 VTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG-- 394 (501)
T ss_pred CCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchh--
Confidence 532 1345689999996 578889999999875321100 0122334456789999999995 56777765
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.++|++++++|.|||++|||++. +.++||++++|++
T Consensus 395 ---~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~-~~~~~d~v~~l~~ 470 (501)
T PRK10762 395 ---LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPE-VLGMSDRILVMHE 470 (501)
T ss_pred ---hCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHH-HHhhCCEEEEEEC
Confidence 699999999999999999999999999999999999999999999998889999999999974 8889999999999
Q ss_pred CeEEEEcCccch
Q 003437 275 GRLVYMGSPVAL 286 (820)
Q Consensus 275 G~iv~~G~~~~~ 286 (820)
|+++..|+++++
T Consensus 471 G~i~~~~~~~~~ 482 (501)
T PRK10762 471 GRISGEFTREQA 482 (501)
T ss_pred CEEEEEeccccC
Confidence 999999987765
No 282
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=7.1e-38 Score=333.60 Aligned_cols=217 Identities=24% Similarity=0.341 Sum_probs=172.3
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...|+++|++++|++. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++ +.+|+|.++|++
T Consensus 17 ~~~i~~~~l~~~~~~~----------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~ 84 (257)
T cd03288 17 GGEIKIHDLCVRYENN----------LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD--IFDGKIVIDGID 84 (257)
T ss_pred CceEEEEEEEEEeCCC----------CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC--CCCCeEEECCEE
Confidence 3459999999999532 1359999999999999999999999999999999999875 468999999998
Q ss_pred CCCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCC
Q 003437 125 VTTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT-------HTYIGNE 194 (820)
Q Consensus 125 ~~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~ig~~ 194 (820)
+... ..++.++|++|++.+++. |++||+.... .... +.+.++++.+++.+.. ++.++ .
T Consensus 85 i~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~------~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~-~ 152 (257)
T cd03288 85 ISKLPLHTLRSRLSIILQDPILFSG-SIRFNLDPEC------KCTD----DRLWEALEIAQLKNMVKSLPGGLDAVVT-E 152 (257)
T ss_pred hhhCCHHHHhhhEEEECCCCccccc-HHHHhcCcCC------CCCH----HHHHHHHHHhCcHHHHhhcccccCcEec-c
Confidence 7532 345678999999988875 9999985321 0111 1223333333333221 12221 2
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
.+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++. ++.|||+++|+++. +.. ||++++|++
T Consensus 153 ~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~-~~~-~dri~~l~~ 229 (257)
T cd03288 153 GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST-ILD-ADLVLVLSR 229 (257)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-HHh-CCEEEEEEC
Confidence 345799999999999999999999999999999999999999999999975 48999999999985 554 999999999
Q ss_pred CeEEEEcCccchhh
Q 003437 275 GRLVYMGSPVALPA 288 (820)
Q Consensus 275 G~iv~~G~~~~~~~ 288 (820)
|+++..|+++++..
T Consensus 230 G~i~~~g~~~~~~~ 243 (257)
T cd03288 230 GILVECDTPENLLA 243 (257)
T ss_pred CEEEEeCCHHHHHh
Confidence 99999998877643
No 283
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.6e-38 Score=320.58 Aligned_cols=193 Identities=24% Similarity=0.356 Sum_probs=166.1
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|.+ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +++|+|+++|+++..
T Consensus 2 l~~~~l~~~~~~------------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~ 67 (200)
T PRK13540 2 LDVIELDFDYHD------------QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIKK 67 (200)
T ss_pred EEEEEEEEEeCC------------eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCcccc
Confidence 789999999853 249999999999999999999999999999999999885 468999999998753
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 128 --SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 128 --~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
...++.++|++|+..+++.+||+||+.+..... .. ..++.++++.+++.+..++.++ .|||||||
T Consensus 68 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~~--~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~ 134 (200)
T PRK13540 68 DLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS------PG--AVGITELCRLFSLEHLIDYPCG-----LLSSGQKR 134 (200)
T ss_pred CHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC------cc--hHHHHHHHHHcCCchhhhCChh-----hcCHHHHH
Confidence 234567899999998888899999998864211 11 2468899999999877676654 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEE
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRI 269 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 269 (820)
|++||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++.. + ..+|..
T Consensus 135 rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-~-~~~d~~ 196 (200)
T PRK13540 135 QVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP-L-NKADYE 196 (200)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh-c-cccchh
Confidence 9999999999999999999999999999999999999998789999999999874 3 447754
No 284
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.9e-38 Score=378.87 Aligned_cols=222 Identities=30% Similarity=0.454 Sum_probs=191.1
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+|.|+.+ +..+||+|+|+++++|+.+||+|||||||||.+-+|-..+. +++|.|.+||+++
T Consensus 986 G~I~~~~V~F~YPsR---------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd--p~~G~V~IDg~di 1054 (1228)
T KOG0055|consen 986 GDIEFRNVSFAYPTR---------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD--PDAGKVKIDGVDI 1054 (1228)
T ss_pred eEEEEeeeEeeCCCC---------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCccc
Confidence 359999999999864 35679999999999999999999999999999999999874 5789999999998
Q ss_pred CCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH-H-H-HcCCCccccccccCCCCCCC
Q 003437 126 TTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYEL-L-D-QLGLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~-l-~-~lgL~~~~~~~ig~~~~~~L 199 (820)
... ..|+++|.|.|+|.||.. |++|||.|+.. ..+.+|..+.++.. + + ..+|++..||.+|+++. +|
T Consensus 1055 k~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~~-----~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~-QL 1127 (1228)
T KOG0055|consen 1055 KDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGSE-----EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGV-QL 1127 (1228)
T ss_pred ccCCHHHHHHhcceeccCchhhcc-cHHHHHhccCC-----CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccC-cC
Confidence 753 468889999999999987 99999999821 24554443322211 1 1 13788999999997664 79
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
|||||||+||||||++||+||||||.||+||+++.+.|.+.|.+.. .|+|+|++.|.++. + +-||.|.|+++|+|++
T Consensus 1128 SGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLST-I-qnaD~I~Vi~~G~VvE 1204 (1228)
T KOG0055|consen 1128 SGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLST-I-QNADVIAVLKNGKVVE 1204 (1228)
T ss_pred CchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhh-h-hcCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999999999975 58999999999985 5 4699999999999999
Q ss_pred EcCccchhh
Q 003437 280 MGSPVALPA 288 (820)
Q Consensus 280 ~G~~~~~~~ 288 (820)
.|+.++++.
T Consensus 1205 ~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1205 QGTHDELLA 1213 (1228)
T ss_pred cccHHHHHh
Confidence 999999876
No 285
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.2e-38 Score=369.71 Aligned_cols=219 Identities=32% Similarity=0.462 Sum_probs=180.4
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..++++|++++|+.. ++.+|+|+|+++++||.++|+||||||||||+|+|+|+++ +.+|+|.+||.++
T Consensus 315 ~~i~~~~v~~~y~~~----------~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~i 382 (544)
T TIGR01842 315 GHLSVENVTIVPPGG----------KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADL 382 (544)
T ss_pred CeEEEEEEEEEcCCC----------CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeh
Confidence 359999999999632 2358999999999999999999999999999999999885 4689999999987
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCCCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKK-----RVYELLDQLGLRSATHTYIGNEGRR 197 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~ig~~~~~ 197 (820)
.. ...++.++||+|++.+|+. |++||+.+... ..++++..+ ..++.++.+ ++..|+.+|+ ...
T Consensus 383 ~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~-~g~ 453 (544)
T TIGR01842 383 KQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGE-----NADPEKIIEAAKLAGVHELILRL--PDGYDTVIGP-GGA 453 (544)
T ss_pred hhCCHHHHhhheEEecCCcccccc-cHHHHHhccCC-----CCCHHHHHHHHHHhChHHHHHhC--ccccccccCC-CcC
Confidence 64 2356789999999999987 99999985421 123332221 122333333 3345677765 346
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.||||||||++|||||+++|++|||||||+|||+.++..+.+.|+++..+|+|+|+++|+++. .+.||++++|++|++
T Consensus 454 ~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~--~~~~d~i~~l~~G~i 531 (544)
T TIGR01842 454 TLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSL--LGCVDKILVLQDGRI 531 (544)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH--HHhCCEEEEEECCEE
Confidence 799999999999999999999999999999999999999999999997678999999999973 467999999999999
Q ss_pred EEEcCccchh
Q 003437 278 VYMGSPVALP 287 (820)
Q Consensus 278 v~~G~~~~~~ 287 (820)
++.|+.+++.
T Consensus 532 ~~~g~~~~l~ 541 (544)
T TIGR01842 532 ARFGERDEVL 541 (544)
T ss_pred EeeCCHHHHh
Confidence 9999987764
No 286
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=8.7e-38 Score=317.84 Aligned_cols=177 Identities=32% Similarity=0.500 Sum_probs=152.9
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc-----cccceEEEEccCCC--CC
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS-----YMKMVSSYVMQDDQ--LF 144 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~-----~~~~~~gyv~Q~~~--l~ 144 (820)
+.+|+++|++|++||+++|+||||||||||+++|+|+.+ +++|+|.++|+++... ..++.++|++|++. ++
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 459999999999999999999999999999999999885 4689999999987421 23456899999973 45
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 003437 145 PMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDE 224 (820)
Q Consensus 145 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDE 224 (820)
..||+||+.+..... ..+.++..++++++++.+||.+..++.+. .|||||||||+|||+|+.+|++|||||
T Consensus 83 -~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 83 -AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPTH-----CLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred -cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 469999999875432 23445556678999999999887777664 699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCcc
Q 003437 225 PTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259 (820)
Q Consensus 225 PtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 259 (820)
||+|||+.++..+.++|++++++|+|||++||+++
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999888999999999985
No 287
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=4.2e-38 Score=372.01 Aligned_cols=216 Identities=27% Similarity=0.394 Sum_probs=183.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+.. ++.+|+|+|+++++||.++|+|+||||||||+|+|+|+.. +.+|+|++||.+++
T Consensus 330 ~i~~~~v~f~y~~~----------~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--~~~G~I~i~g~~i~ 397 (571)
T TIGR02203 330 DVEFRNVTFRYPGR----------DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE--PDSGQILLDGHDLA 397 (571)
T ss_pred eEEEEEEEEEcCCC----------CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEeHH
Confidence 59999999999542 2359999999999999999999999999999999999985 46799999999876
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-------SATHTYIGNEGR 196 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~ 196 (820)
. ...++.++||+|++.+|+. |++|||.++.. ...+ ++++.++++.+|+. +..|+.+|+. .
T Consensus 398 ~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~----~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g 467 (571)
T TIGR02203 398 DYTLASLRRQVALVSQDVVLFND-TIANNIAYGRT----EQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGEN-G 467 (571)
T ss_pred hcCHHHHHhhceEEccCcccccc-cHHHHHhcCCC----CCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCC-C
Confidence 4 3456779999999999987 99999987621 1122 34466667766654 3467888865 3
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
+.||||||||++|||+++++|++|+||||||+||..+...+++.|+++. +++|+|++||+++ ....||+|++|++|+
T Consensus 468 ~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~g~ 544 (571)
T TIGR02203 468 VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDDGR 544 (571)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeCCE
Confidence 5799999999999999999999999999999999999999999999885 4799999999986 457799999999999
Q ss_pred EEEEcCccchh
Q 003437 277 LVYMGSPVALP 287 (820)
Q Consensus 277 iv~~G~~~~~~ 287 (820)
++..|+.+++.
T Consensus 545 i~~~g~~~~l~ 555 (571)
T TIGR02203 545 IVERGTHNELL 555 (571)
T ss_pred EEeeCCHHHHH
Confidence 99999988875
No 288
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=8.2e-38 Score=314.87 Aligned_cols=176 Identities=30% Similarity=0.546 Sum_probs=154.1
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|++++|..+ .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++..
T Consensus 1 i~~~~~~~~~~~~----------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 68 (178)
T cd03247 1 LSINNVSFSYPEQ----------EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK--PQQGEITLDGVPVSD 68 (178)
T ss_pred CEEEEEEEEeCCC----------CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCEEHHH
Confidence 5789999998542 1249999999999999999999999999999999999875 468999999997643
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 128 --SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 128 --~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
...++.++|++|++.+++ .||+||+ +..|||||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~q 105 (178)
T cd03247 69 LEKALSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGERQ 105 (178)
T ss_pred HHHHHHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHHH
Confidence 224567899999998886 5998886 1369999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|++|||+|+.+|++|||||||+|||+.++..+++.|+++. ++.|||+++|++.. +. .||++++|++|++++.|
T Consensus 106 rv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~~-~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 106 RLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTG-IE-HMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-HH-hCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999996 58999999999985 54 69999999999998754
No 289
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-38 Score=344.10 Aligned_cols=226 Identities=30% Similarity=0.432 Sum_probs=193.0
Q ss_pred cCCCCCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEE
Q 003437 40 LKMIPGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVR 119 (820)
Q Consensus 40 ~~~~~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~ 119 (820)
+...++..++++||+|.|.. ++++|+||||++.||+.+||+||||+||||++|+|-.+.. ..+|.|.
T Consensus 530 pl~~~~G~i~fsnvtF~Y~p-----------~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd--v~sGsI~ 596 (790)
T KOG0056|consen 530 PLKVTQGKIEFSNVTFAYDP-----------GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD--VNSGSIT 596 (790)
T ss_pred CccccCCeEEEEEeEEecCC-----------CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh--ccCceEE
Confidence 34456677999999999964 3579999999999999999999999999999999999874 4689999
Q ss_pred ECCEeCCC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH--HH-HHcCCCccccccccC
Q 003437 120 IDGKPVTT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYE--LL-DQLGLRSATHTYIGN 193 (820)
Q Consensus 120 i~G~~~~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~--~l-~~lgL~~~~~~~ig~ 193 (820)
+||+++.. ...|+.+|.||||..+|.+ |+..|+.|+.. +.+.++..+.++. += +.+++.+..++.+|+
T Consensus 597 iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak~-----~AsneevyaAAkAA~IHdrIl~fPegY~t~VGE 670 (790)
T KOG0056|consen 597 IDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAKP-----SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGE 670 (790)
T ss_pred EcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecCC-----CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhh
Confidence 99999863 3567889999999999987 99999998732 2344444332222 21 357889999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 194 EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 194 ~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
++.+ |||||||||+|||+++.+|.+++|||.||+||..+.+.|...|.++++ ++|.|++.|..+. +. -+|.|++++
T Consensus 671 RGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST-iv-nAD~ILvi~ 746 (790)
T KOG0056|consen 671 RGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST-IV-NADLILVIS 746 (790)
T ss_pred cccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh-ee-cccEEEEEe
Confidence 8775 999999999999999999999999999999999999999999999986 7889999999986 43 489999999
Q ss_pred CCeEEEEcCccchhh
Q 003437 274 RGRLVYMGSPVALPA 288 (820)
Q Consensus 274 ~G~iv~~G~~~~~~~ 288 (820)
+|+|++.|..+|++.
T Consensus 747 ~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 747 NGRIVERGRHEELLK 761 (790)
T ss_pred CCeEeecCcHHHHHh
Confidence 999999999988864
No 290
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.9e-37 Score=319.56 Aligned_cols=199 Identities=27% Similarity=0.398 Sum_probs=164.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++|++++|+.. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|.++.
T Consensus 6 ~l~~~~l~~~~~~~----------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 73 (207)
T cd03369 6 EIEVENLSVRYAPD----------LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE--AEEGKIEIDGIDIS 73 (207)
T ss_pred eEEEEEEEEEeCCC----------CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEhH
Confidence 59999999998531 1359999999999999999999999999999999999875 46899999999874
Q ss_pred Cc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 127 TS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
.. ..++.++|++|++.+++. ||+||+.+.. .... +.+.+.++ + +. .+..|||||
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~~-tv~~~l~~~~------~~~~----~~~~~~l~---~----~~-----~~~~LS~G~ 130 (207)
T cd03369 74 TIPLEDLRSSLTIIPQDPTLFSG-TIRSNLDPFD------EYSD----EEIYGALR---V----SE-----GGLNLSQGQ 130 (207)
T ss_pred HCCHHHHHhhEEEEecCCcccCc-cHHHHhcccC------CCCH----HHHHHHhh---c----cC-----CCCcCCHHH
Confidence 31 235679999999988875 9999996531 1122 22333333 2 22 235799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
+||++|||+|+.+|++|||||||+|||+.++..+.+.|+++. +|.|+|++||+++. +.. ||++++|++|+++..|++
T Consensus 131 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~-~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 131 RQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRT-IID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hhh-CCEEEEEECCEEEecCCC
Confidence 999999999999999999999999999999999999999985 48999999999985 554 999999999999988764
No 291
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.7e-37 Score=341.04 Aligned_cols=216 Identities=30% Similarity=0.442 Sum_probs=194.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++|++|.|++ ..+++|||+++++||+.||+|.||||||||+|+|.|.+. |++|+|.++|+++.
T Consensus 4 ~l~~~~itK~f~~------------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~--P~~GeI~v~G~~v~ 69 (501)
T COG3845 4 ALEMRGITKRFPG------------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ--PDSGEIRVDGKEVR 69 (501)
T ss_pred eEEEeccEEEcCC------------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc--CCcceEEECCEEec
Confidence 5999999999973 358999999999999999999999999999999999885 57899999999985
Q ss_pred Cc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 TS----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
-. ..+..||+|.|+..|+|++||.||+.++..-......+.++.+++++++.+.+||+=..|.+++ +||-|
T Consensus 70 ~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-----dLsVG 144 (501)
T COG3845 70 IKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-----DLSVG 144 (501)
T ss_pred cCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-----cCCcc
Confidence 32 2456689999999999999999999998754322345677888999999999999988888887 49999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||.|-++|..+|++|||||||+-|-|....++++.|+.++++|+|||++||... ++.++|||+.+|.+|+++..-+
T Consensus 145 ~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 145 EQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred hhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeCCeEEeeec
Confidence 999999999999999999999999999999999999999999999999999999998 5899999999999999876555
No 292
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-37 Score=362.72 Aligned_cols=216 Identities=23% Similarity=0.353 Sum_probs=182.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.++++|+++. .+++|+|++|++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++.
T Consensus 257 ~l~~~~~~~~----------------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~ 318 (501)
T PRK11288 257 RLRLDGLKGP----------------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPID 318 (501)
T ss_pred EEEEeccccC----------------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECC
Confidence 5888888731 38999999999999999999999999999999999885 46899999999875
Q ss_pred Cc----cccceEEEEccCC---CCCCCCCHHHHHHHHHHhcC-CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 003437 127 TS----YMKMVSSYVMQDD---QLFPMLTVFETFMFAAEVRL-PPS--ISRDEKKKRVYELLDQLGLR-SATHTYIGNEG 195 (820)
Q Consensus 127 ~~----~~~~~~gyv~Q~~---~l~~~lTV~e~l~~~~~~~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~ 195 (820)
.. ..++.++|++|++ .+++.+||.||+.+...... ... ....+.+++++++++.+||. +..++.++
T Consensus 319 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 395 (501)
T PRK11288 319 IRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM--- 395 (501)
T ss_pred CCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc---
Confidence 31 2245689999986 48888999999987542110 001 12333346788999999994 67777776
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++.+++++|++++++|.|||++|||++. +.++||++++|++|
T Consensus 396 --~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~-~~~~~d~i~~l~~g 472 (501)
T PRK11288 396 --NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPE-VLGVADRIVVMREG 472 (501)
T ss_pred --cCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHH-HHhhCCEEEEEECC
Confidence 699999999999999999999999999999999999999999999999889999999999985 88899999999999
Q ss_pred eEEEEcCccch
Q 003437 276 RLVYMGSPVAL 286 (820)
Q Consensus 276 ~iv~~G~~~~~ 286 (820)
++++.|+++++
T Consensus 473 ~i~~~~~~~~~ 483 (501)
T PRK11288 473 RIAGELAREQA 483 (501)
T ss_pred EEEEEEccccC
Confidence 99999988654
No 293
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=7.4e-38 Score=377.58 Aligned_cols=217 Identities=27% Similarity=0.475 Sum_probs=182.7
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+|+|+.. ++.+|+|+|+++++||.++|+|+||||||||+|+|+|++. +.+|+|++||.++
T Consensus 454 ~~i~~~~vsf~y~~~----------~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~--p~~G~I~idg~~i 521 (694)
T TIGR01846 454 GAITFENIRFRYAPD----------SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT--PQHGQVLVDGVDL 521 (694)
T ss_pred CeEEEEEEEEEcCCC----------CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEeh
Confidence 359999999999632 2359999999999999999999999999999999999985 4689999999998
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYIGNEG 195 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~ 195 (820)
.. ...++.++||+|++.+|+. |++|||.++. + ..+. +.+.++++..++ ++..|+.+++.
T Consensus 522 ~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~----~-~~~~----~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~- 590 (694)
T TIGR01846 522 AIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCN----P-GAPF----EHVIHAAKLAGAHDFISELPQGYNTEVGEK- 590 (694)
T ss_pred hhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCC----C-CCCH----HHHHHHHHHcChHHHHHhCcCccCcEecCC-
Confidence 64 3457789999999999986 9999998742 1 2233 234444555444 33467888764
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
...||||||||++|||||+++|++|||||||++||+.+...+.+.|+++. +++|+|++||+++. + ..||++++|++|
T Consensus 591 g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~-~-~~~d~ii~l~~G 667 (694)
T TIGR01846 591 GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLST-V-RACDRIIVLEKG 667 (694)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHH-H-HhCCEEEEEeCC
Confidence 46899999999999999999999999999999999999999999999985 58999999999974 4 469999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+.+++.+
T Consensus 668 ~i~~~g~~~~l~~ 680 (694)
T TIGR01846 668 QIAESGRHEELLA 680 (694)
T ss_pred EEEEeCCHHHHHH
Confidence 9999999888754
No 294
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.8e-37 Score=323.64 Aligned_cols=197 Identities=30% Similarity=0.465 Sum_probs=165.1
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCC--CCCCHHHHHHHHH
Q 003437 80 GQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLF--PMLTVFETFMFAA 157 (820)
Q Consensus 80 ~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~--~~lTV~e~l~~~~ 157 (820)
|++++||+++|+||||||||||+++|+|+.+ +++|+|.++|+++.. .++.++|++|++.++ ..+||.||+.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPGK--GWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccchH--hhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 4688999999999999999999999999875 468999999987642 346789999998763 3479999998753
Q ss_pred HhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q 003437 158 EVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYS 236 (820)
Q Consensus 158 ~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~ 236 (820)
..... ......+..+++.++++.+|+++..++.++ +|||||||||+||++|+.+|++|||||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 21100 001122344578899999999887777665 699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchh
Q 003437 237 VVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 237 i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 287 (820)
+.+.|++++++|+|+|++||+++. +.++||++++| +|++++.|+++++.
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~~-~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLAQ-AMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 999999998789999999999974 78899999999 89999999887653
No 295
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2e-37 Score=360.93 Aligned_cols=216 Identities=21% Similarity=0.303 Sum_probs=180.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++|+++ .+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|+++.
T Consensus 268 ~l~~~~l~~-----------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~ 328 (510)
T PRK15439 268 VLTVEDLTG-----------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP--ARGGRIMLNGKEIN 328 (510)
T ss_pred eEEEeCCCC-----------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEECC
Confidence 588888872 16999999999999999999999999999999999885 45799999999875
Q ss_pred Ccc----ccceEEEEccCC---CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCC
Q 003437 127 TSY----MKMVSSYVMQDD---QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRRG 198 (820)
Q Consensus 127 ~~~----~~~~~gyv~Q~~---~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~ 198 (820)
... .++.++|++|++ .+++.+||.||+.................+++++++++.+||+ +..++.++ .
T Consensus 329 ~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~ 403 (510)
T PRK15439 329 ALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAAR-----T 403 (510)
T ss_pred CCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccc-----c
Confidence 321 235689999984 4888899999986432111010011223346788999999997 67777765 6
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
|||||||||+||++|+.+|++|||||||+|||+.++..+.++|++++++|.|||++|||++. +.++||++++|++|+++
T Consensus 404 LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~-i~~~~d~i~~l~~G~i~ 482 (510)
T PRK15439 404 LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEE-IEQMADRVLVMHQGEIS 482 (510)
T ss_pred CCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHH-HHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999998889999999999985 88899999999999999
Q ss_pred EEcCccchh
Q 003437 279 YMGSPVALP 287 (820)
Q Consensus 279 ~~G~~~~~~ 287 (820)
..|+++++.
T Consensus 483 ~~~~~~~~~ 491 (510)
T PRK15439 483 GALTGAAIN 491 (510)
T ss_pred EEEccccCC
Confidence 999886653
No 296
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=1.2e-37 Score=314.27 Aligned_cols=176 Identities=38% Similarity=0.585 Sum_probs=151.7
Q ss_pred EEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc
Q 003437 49 EFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS 128 (820)
Q Consensus 49 ~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~ 128 (820)
+++||+++|++ +.+|+++|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|+++...
T Consensus 1 ~~~~l~~~~~~------------~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~--~~~G~v~~~g~~~~~~ 66 (180)
T cd03214 1 EVENLSVGYGG------------RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK--PSSGEILLDGKDLASL 66 (180)
T ss_pred CeeEEEEEECC------------eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCcC
Confidence 47899999853 249999999999999999999999999999999999875 4689999999987531
Q ss_pred ---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 129 ---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 129 ---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
..++.++|++| +++.+||.+..++.+ +.|||||||
T Consensus 67 ~~~~~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~~~-----~~LS~G~~q 104 (180)
T cd03214 67 SPKELARKIAYVPQ-------------------------------------ALELLGLAHLADRPF-----NELSGGERQ 104 (180)
T ss_pred CHHHHHHHHhHHHH-------------------------------------HHHHcCCHhHhcCCc-----ccCCHHHHH
Confidence 12344677776 566777776655554 469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|++|||+|+.+|+++||||||+|||+.++..+.+.|++++++ |.|+|+++|+++. +.++||++++|++|++++.|
T Consensus 105 rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~-~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 105 RVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL-AARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999876 8999999999984 77899999999999998654
No 297
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=5.1e-38 Score=400.09 Aligned_cols=220 Identities=25% Similarity=0.438 Sum_probs=185.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--------------
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG-------------- 112 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~-------------- 112 (820)
.|+++||+|+|+.+. ++++|+|+||+|++|+.+||+||||||||||+++|.|++.|.
T Consensus 1165 ~I~f~nVsF~Y~~~~---------~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~ 1235 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRP---------NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTND 1235 (1466)
T ss_pred eEEEEEEEEECCCCC---------CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccc
Confidence 599999999997421 245999999999999999999999999999999999998752
Q ss_pred --------------------------------------CCceEEEECCEeCCC---ccccceEEEEccCCCCCCCCCHHH
Q 003437 113 --------------------------------------SLEGSVRIDGKPVTT---SYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 113 --------------------------------------~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
+.+|+|++||.++.. ..+|+.++||+|++.||+. |++|
T Consensus 1236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIre 1314 (1466)
T PTZ00265 1236 MTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYE 1314 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHH
Confidence 258999999999864 3467889999999999975 9999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQL-------GLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDE 224 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDE 224 (820)
||.++.. ..+.++ ++++++.. .|++..||.+|+.+ ..||||||||++|||||+++|+||||||
T Consensus 1315 NI~~g~~-----~at~ee----I~~A~k~A~l~~fI~~LP~GydT~VGe~G-~~LSGGQkQRIaIARALlr~p~ILLLDE 1384 (1466)
T PTZ00265 1315 NIKFGKE-----DATRED----VKRACKFAAIDEFIESLPNKYDTNVGPYG-KSLSGGQKQRIAIARALLREPKILLLDE 1384 (1466)
T ss_pred HHhcCCC-----CCCHHH----HHHHHHHcCCHHHHHhCccccCCccCCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9998731 234433 44444443 35667899999644 5699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCccHHHHhhcCEEEEEeC----CeEE-EEcCccchhh
Q 003437 225 PTSGLDSTSAYSVVEKVKDIA-RTGSIVLMTIHQPSYRIQMLLDRIIVLAR----GRLV-YMGSPVALPA 288 (820)
Q Consensus 225 PtsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~lL~~----G~iv-~~G~~~~~~~ 288 (820)
|||+||+.+...|.+.|+++. .+++|+|+++|+++. + +.||+|++|++ |+++ +.|+.++++.
T Consensus 1385 aTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlst-i-~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1385 ATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIAS-I-KRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred cccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHH-H-HhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 999999999999999999986 368999999999974 4 56999999999 9955 8999988863
No 298
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.6e-37 Score=367.46 Aligned_cols=217 Identities=27% Similarity=0.450 Sum_probs=182.2
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|+... ++.+|+|+|++++|||.++|+|+||||||||+|+|+|+++ +.+|+|.+||.++
T Consensus 336 ~~i~~~~v~f~y~~~~---------~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~--p~~G~I~i~g~~i 404 (576)
T TIGR02204 336 GEIEFEQVNFAYPARP---------DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD--PQSGRILLDGVDL 404 (576)
T ss_pred ceEEEEEEEEECCCCC---------CCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEEH
Confidence 3599999999996421 2459999999999999999999999999999999999985 4579999999988
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-------SATHTYIGNEG 195 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~ 195 (820)
+. ...++.++|+||++.+|+. |++|||.++.. ..+ .+++.++++.+|+. +..|+.+|+.
T Consensus 405 ~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~-----~~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~- 473 (576)
T TIGR02204 405 RQLDPAELRARMALVPQDPVLFAA-SVMENIRYGRP-----DAT----DEEVEAAARAAHAHEFISALPEGYDTYLGER- 473 (576)
T ss_pred HhcCHHHHHHhceEEccCCccccc-cHHHHHhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhCCCCCCceeCCC-
Confidence 64 2356779999999999986 99999987521 122 23455666666654 3456777654
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
...||||||||++|||+++++|++|+||||||+||+.++..+++.|+++. +++|+|++||+++. ...+|++++|++|
T Consensus 474 g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~~--~~~~d~vi~l~~g 550 (576)
T TIGR02204 474 GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLAT--VLKADRIVVMDQG 550 (576)
T ss_pred CCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchHH--HHhCCEEEEEECC
Confidence 45799999999999999999999999999999999999999999999985 48999999999864 4679999999999
Q ss_pred eEEEEcCccchh
Q 003437 276 RLVYMGSPVALP 287 (820)
Q Consensus 276 ~iv~~G~~~~~~ 287 (820)
+++..|+++++.
T Consensus 551 ~~~~~g~~~~l~ 562 (576)
T TIGR02204 551 RIVAQGTHAELI 562 (576)
T ss_pred EEEeeecHHHHH
Confidence 999999987764
No 299
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=3.9e-37 Score=328.15 Aligned_cols=232 Identities=26% Similarity=0.413 Sum_probs=201.6
Q ss_pred CCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEE
Q 003437 44 PGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRI 120 (820)
Q Consensus 44 ~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i 120 (820)
+...|+++||++.|.... +...++++|||.+++||.+||+|+||||||-..+.|.|+++.. ..+|+|.|
T Consensus 3 ~~~lL~v~nLsV~f~~~~--------~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f 74 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEG--------GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILF 74 (534)
T ss_pred CCcceeeeccEEEEecCC--------cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEE
Confidence 345699999999996432 3456999999999999999999999999999999999998542 25799999
Q ss_pred CCEeCCCc---cc----cceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 003437 121 DGKPVTTS---YM----KMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYI 191 (820)
Q Consensus 121 ~G~~~~~~---~~----~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~i 191 (820)
+|+++-.. .. -..|+++||++ .|.|-.|+...+.-..+++ .++++++.++++.++|+.+|+.+-...+
T Consensus 75 ~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl- 151 (534)
T COG4172 75 DGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRL- 151 (534)
T ss_pred cChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhh-
Confidence 99997431 11 23589999998 4888889999998887765 3578888999999999999998765544
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEE
Q 003437 192 GNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRII 270 (820)
Q Consensus 192 g~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 270 (820)
+.+|.+|||||||||.||+||+.+|++||.||||++||...+.+|+++|++|.++ |..++++|||..- +.+++|||+
T Consensus 152 -~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~i-Vr~~ADrV~ 229 (534)
T COG4172 152 -DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGI-VRKFADRVY 229 (534)
T ss_pred -hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHH-HHHhhhhEE
Confidence 5788999999999999999999999999999999999999999999999999764 9999999999984 889999999
Q ss_pred EEeCCeEEEEcCccchhh
Q 003437 271 VLARGRLVYMGSPVALPA 288 (820)
Q Consensus 271 lL~~G~iv~~G~~~~~~~ 288 (820)
+|.+|++++.|+.+++..
T Consensus 230 VM~~G~ivE~~~t~~lF~ 247 (534)
T COG4172 230 VMQHGEIVETGTTETLFA 247 (534)
T ss_pred EEeccEEeecCcHHHHhh
Confidence 999999999999887753
No 300
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.3e-37 Score=365.11 Aligned_cols=216 Identities=21% Similarity=0.363 Sum_probs=181.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++|++++|+.. ++.+|+|+|+++++||.++|+||||||||||+++|+|+++ +.+|+|.+||+++.
T Consensus 313 ~I~~~~v~~~y~~~----------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~--p~~G~i~~~g~~~~ 380 (569)
T PRK10789 313 ELDVNIRQFTYPQT----------DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD--VSEGDIRFHDIPLT 380 (569)
T ss_pred cEEEEEEEEECCCC----------CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEHh
Confidence 59999999999632 2359999999999999999999999999999999999885 46899999999875
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYIGNEGR 196 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~ 196 (820)
. ..+++.++||+|++.+|+. |++||+.++.. ..+.+ .+.++++..++ ++..|+.+|+. .
T Consensus 381 ~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~~-g 449 (569)
T PRK10789 381 KLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGRP-----DATQQ----EIEHVARLASVHDDILRLPQGYDTEVGER-G 449 (569)
T ss_pred hCCHHHHHhheEEEccCCeeccc-cHHHHHhcCCC-----CCCHH----HHHHHHHHcCCHHHHHhCcCcccceecCC-C
Confidence 4 2456789999999999986 99999987521 12332 34444555444 44567888754 4
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..||||||||++|||+|+++|++|||||||++||+.+...+.+.|+++. +|+|+|+++|+++. ...||++++|++|+
T Consensus 450 ~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~--~~~~d~i~~l~~G~ 526 (569)
T PRK10789 450 VMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSA--LTEASEILVMQHGH 526 (569)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhH--HHcCCEEEEEeCCE
Confidence 5799999999999999999999999999999999999999999999985 58999999999964 35699999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
++..|+.+++.+
T Consensus 527 i~~~g~~~~l~~ 538 (569)
T PRK10789 527 IAQRGNHDQLAQ 538 (569)
T ss_pred EEEecCHHHHHH
Confidence 999999887753
No 301
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=3.8e-37 Score=338.39 Aligned_cols=188 Identities=32% Similarity=0.507 Sum_probs=165.7
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHH
Q 003437 90 IMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRD 168 (820)
Q Consensus 90 llGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~ 168 (820)
|+||||||||||||+|+|+.+ +++|+|.++|+++... ..++.++|++|++.+++.+||+||+.|+...+ ..+++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ--PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 689999999999999999985 4689999999988542 23567899999999999999999999986543 23445
Q ss_pred HHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 003437 169 EKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART- 247 (820)
Q Consensus 169 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~- 247 (820)
+..++++++++.+||.+..++.+. +|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKPH-----QLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 556789999999999987777764 69999999999999999999999999999999999999999999999865
Q ss_pred CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchhh
Q 003437 248 GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPA 288 (820)
Q Consensus 248 g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 288 (820)
|+|||++||+++ ++..+||++++|++|+++..|+++++..
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999997 4788999999999999999999988753
No 302
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.6e-37 Score=316.07 Aligned_cols=196 Identities=28% Similarity=0.495 Sum_probs=155.1
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|..+.. ..+.+|+++|++|++||+++|+||||||||||+++|+|+.+ +++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~-------~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~--~~~G~i~~~g----- 66 (204)
T cd03250 1 ISVEDASFTWDSGEQ-------ETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE--KLSGSVSVPG----- 66 (204)
T ss_pred CEEeEEEEecCCCCc-------cccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCCeEEEcC-----
Confidence 578999999854200 00259999999999999999999999999999999999875 4689999998
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCCCCCCCC
Q 003437 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT-------HTYIGNEGRRGVS 200 (820)
Q Consensus 128 ~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~ig~~~~~~LS 200 (820)
.++|++|++.+++ .||+||+.+... ...+ ++.+.++.+++.+.. ++.+. ..+..||
T Consensus 67 -----~i~~~~q~~~l~~-~t~~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS 129 (204)
T cd03250 67 -----SIAYVSQEPWIQN-GTIRENILFGKP------FDEE----RYEKVIKACALEPDLEILPDGDLTEIG-EKGINLS 129 (204)
T ss_pred -----EEEEEecCchhcc-CcHHHHhccCCC------cCHH----HHHHHHHHcCcHHHHHhccCcccceec-CCCCcCC
Confidence 5899999998885 599999987532 1111 222333333332211 22222 2356799
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVE-KVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
||||||++|||+|+.+|+++||||||+|||+.++..+.+ +++++.++|.|||+++|++.. +.. +|++++|++|+
T Consensus 130 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~-~~~-~d~i~~l~~G~ 204 (204)
T cd03250 130 GGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQL-LPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHH-Hhh-CCEEEEEeCCC
Confidence 999999999999999999999999999999999999998 567776678999999999874 555 99999999985
No 303
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=6.7e-37 Score=362.01 Aligned_cols=215 Identities=28% Similarity=0.450 Sum_probs=178.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++. +.+|+|+|+++++||.++|+||||||||||+++|+|+.+ +.+|+|.+||.++.
T Consensus 334 ~i~~~~v~~~y~~~-----------~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~~~ 400 (585)
T TIGR01192 334 AVEFRHITFEFANS-----------SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD--PTVGQILIDGIDIN 400 (585)
T ss_pred eEEEEEEEEECCCC-----------CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC--CCCCEEEECCEEhh
Confidence 59999999999632 248999999999999999999999999999999999885 46899999999875
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLG-------LRSATHTYIGNEGR 196 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~ig~~~~ 196 (820)
. ...++.++||+|++.+++. |++||+.++.. ..+.++. .+.++..+ +.+..|+.+|+. .
T Consensus 401 ~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~~~----~~a~~~~~~~~~i~~l~~g~~t~~~~~-~ 469 (585)
T TIGR01192 401 TVTRESLRKSIATVFQDAGLFNR-SIRENIRLGRE-----GATDEEV----YEAAKAAAAHDFILKRSNGYDTLVGER-G 469 (585)
T ss_pred hCCHHHHHhheEEEccCCccCcc-cHHHHHhcCCC-----CCCHHHH----HHHHHHhCcHHHHHhccccccchhcCC-C
Confidence 4 2456789999999999875 99999987521 1233332 23333333 333456667653 4
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..||||||||++|||+|+.+|++|||||||++||+.++..+.+.|+++. +++|+|+++|+++. + ..||++++|++|+
T Consensus 470 ~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~-~-~~~d~i~~l~~G~ 546 (585)
T TIGR01192 470 NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLST-V-RNADLVLFLDQGR 546 (585)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHH-H-HcCCEEEEEECCE
Confidence 6799999999999999999999999999999999999999999999884 48999999999974 4 5699999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
+++.|+.+++.+
T Consensus 547 i~~~g~~~~l~~ 558 (585)
T TIGR01192 547 LIEKGSFQELIQ 558 (585)
T ss_pred EEEECCHHHHHH
Confidence 999999877654
No 304
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.6e-36 Score=301.15 Aligned_cols=158 Identities=30% Similarity=0.458 Sum_probs=142.6
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +++|+++|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~ 66 (163)
T cd03216 1 LELRGITKRFGG------------VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEVSF 66 (163)
T ss_pred CEEEEEEEEECC------------eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECCc
Confidence 578999999953 249999999999999999999999999999999999885 468999999998754
Q ss_pred c----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 128 S----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 128 ~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
. ..++.++|++| |||||
T Consensus 67 ~~~~~~~~~~i~~~~q-----------------------------------------------------------LS~G~ 87 (163)
T cd03216 67 ASPRDARRAGIAMVYQ-----------------------------------------------------------LSVGE 87 (163)
T ss_pred CCHHHHHhcCeEEEEe-----------------------------------------------------------cCHHH
Confidence 2 13456788887 99999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++.. +.++||++++|++|++++
T Consensus 88 ~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 88 RQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE-VFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999998779999999999874 778899999999999875
No 305
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=2.4e-37 Score=338.91 Aligned_cols=224 Identities=30% Similarity=0.449 Sum_probs=190.8
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...|.+++|++--++ .++++|+|+||.+.+||.++|+||||||||||.|+|.|..+ +.+|.|.+||-+
T Consensus 332 ~g~L~Ve~l~~~PPg----------~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~--p~~G~VRLDga~ 399 (580)
T COG4618 332 QGALSVERLTAAPPG----------QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTSGSVRLDGAD 399 (580)
T ss_pred CceeeEeeeeecCCC----------CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc--cCCCcEEecchh
Confidence 446999999985332 24679999999999999999999999999999999999885 468999999998
Q ss_pred CCC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHH-----HHHHHHHHHHHcCCCccccccccCCCC
Q 003437 125 VTT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDE-----KKKRVYELLDQLGLRSATHTYIGNEGR 196 (820)
Q Consensus 125 ~~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~~~ig~~~~ 196 (820)
++. ..+-+++||+|||-.||+. ||.|||.=.. ...+.+. +...|.+++ +.|.+-+||.||+.+
T Consensus 400 l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~-----~~~d~~kIieAA~lAgvHelI--l~lP~GYdT~iG~~G- 470 (580)
T COG4618 400 LRQWDREQLGRHIGYLPQDVELFDG-TIAENIARFG-----EEADPEKVIEAARLAGVHELI--LRLPQGYDTRIGEGG- 470 (580)
T ss_pred hhcCCHHHhccccCcCcccceecCC-cHHHHHHhcc-----ccCCHHHHHHHHHHcChHHHH--HhCcCCccCccCCCC-
Confidence 864 3456789999999999998 9999995221 1222221 223345554 356888999999654
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..||||||||+++||||-.+|.+++||||-|+||......+.+.|..++++|.|+|+++|.|+ +...+|+|++|++|+
T Consensus 471 ~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~ 548 (580)
T COG4618 471 ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGR 548 (580)
T ss_pred CCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecCCh
Confidence 579999999999999999999999999999999999999999999999999999999999997 567799999999999
Q ss_pred EEEEcCccchhhhhh
Q 003437 277 LVYMGSPVALPAHLA 291 (820)
Q Consensus 277 iv~~G~~~~~~~~f~ 291 (820)
+-.+|+.+|++..+.
T Consensus 549 ~~~FG~r~eVLa~~~ 563 (580)
T COG4618 549 IAAFGPREEVLAKVL 563 (580)
T ss_pred HHhcCCHHHHHHHhc
Confidence 999999999987764
No 306
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.7e-38 Score=297.87 Aligned_cols=193 Identities=30% Similarity=0.459 Sum_probs=171.0
Q ss_pred cccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC---ccccceEEEEccCCCCCCCC
Q 003437 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT---SYMKMVSSYVMQDDQLFPML 147 (820)
Q Consensus 71 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~~~l~~~l 147 (820)
..+||+++||.+++||..+|.||||||||||+|+++-+.. +++|++++.|++++. ..+|+.++||.|.+.||+.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis--p~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~- 91 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD- 91 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC--CCCceEEEcCccccccChHHHHHHHHHHHcCcccccc-
Confidence 4569999999999999999999999999999999999885 468999999999864 3578889999999999998
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCC
Q 003437 148 TVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPT 226 (820)
Q Consensus 148 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPt 226 (820)
||++||.|...+|... ...++..++|+.++|.+. +++.+. .||||||||++|+|.|...|+||+|||||
T Consensus 92 tVeDNlifP~~~r~rr-----~dr~aa~~llar~~l~~~~L~k~it-----~lSGGE~QriAliR~Lq~~P~ILLLDE~T 161 (223)
T COG4619 92 TVEDNLIFPWQIRNRR-----PDRAAALDLLARFALPDSILTKNIT-----ELSGGEKQRIALIRNLQFMPKILLLDEIT 161 (223)
T ss_pred chhhccccchHHhccC-----CChHHHHHHHHHcCCchhhhcchhh-----hccchHHHHHHHHHHhhcCCceEEecCch
Confidence 9999999998877321 134667889999999875 455553 69999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 227 SGLDSTSAYSVVEKVKDIA-RTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 227 sgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
|+||+.+++.|-++|.++. .+.+.++.+|||++. ..+.+|+++-+..|++
T Consensus 162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dq-a~rha~k~itl~~G~~ 212 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQ-AIRHADKVITLQPGHA 212 (223)
T ss_pred hhcChhhHHHHHHHHHHHhhhhceEEEEEecChHH-HhhhhheEEEeccCcc
Confidence 9999999999999999986 579999999999985 5678999999999875
No 307
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=3.8e-36 Score=358.71 Aligned_cols=221 Identities=28% Similarity=0.405 Sum_probs=192.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++|++++|+... +.+.+|+|+||++++||+++|+||||||||||+|+|+|+.+ +++|+|.+||+++.
T Consensus 4 ~l~~~nl~~~y~~~~--------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~i~ 73 (648)
T PRK10535 4 LLELKDIRRSYPSGE--------EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK--PTSGTYRVAGQDVA 73 (648)
T ss_pred EEEEeeEEEEeCCCC--------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcC
Confidence 599999999995321 12459999999999999999999999999999999999985 46899999999876
Q ss_pred Ccc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 003437 127 TSY-------MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 127 ~~~-------~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~L 199 (820)
... .++.++|++|++.+++.+|+.||+.+..... ..+.++.++++.++++.+||.+..|+.++ .|
T Consensus 74 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~-----~L 145 (648)
T PRK10535 74 TLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQPS-----QL 145 (648)
T ss_pred cCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCcc-----cC
Confidence 421 1457899999999999999999999865432 23445667788999999999988777765 69
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
||||+||++|||+|+.+|++|||||||+|||+.++..+.++|++++++|+|+|+++|+++. + +.||++++|++|++++
T Consensus 146 S~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~-~-~~~d~i~~l~~G~i~~ 223 (648)
T PRK10535 146 SGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQV-A-AQAERVIEIRDGEIVR 223 (648)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHH-H-HhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999999999998789999999999874 4 4699999999999999
Q ss_pred EcCccchh
Q 003437 280 MGSPVALP 287 (820)
Q Consensus 280 ~G~~~~~~ 287 (820)
.|++++..
T Consensus 224 ~g~~~~~~ 231 (648)
T PRK10535 224 NPPAQEKV 231 (648)
T ss_pred ecCccccc
Confidence 99998775
No 308
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-36 Score=304.97 Aligned_cols=168 Identities=39% Similarity=0.592 Sum_probs=148.4
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|+++.|.++ +..+|+++|+++++||+++|+||||||||||+++|+|+++ +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~----------~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~--~~~G~i~~~g~~~~~ 68 (171)
T cd03228 1 IEFKNVSFSYPGR----------PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD--PTSGEILIDGVDLRD 68 (171)
T ss_pred CEEEEEEEEcCCC----------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhhh
Confidence 4789999998542 1259999999999999999999999999999999999885 468999999998753
Q ss_pred c---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 128 S---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 128 ~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
. ..++.++|++|++.+++ .||.||+ ||||||
T Consensus 69 ~~~~~~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~ 102 (171)
T cd03228 69 LDLESLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQR 102 (171)
T ss_pred cCHHHHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHH
Confidence 1 23566899999998876 5888876 999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
|||+||++|+.+|++|||||||+|||+.++..+.++|+++.+ ++|||++||++.. +.. ||++++|++|+
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~~-~d~~~~l~~g~ 171 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLST-IRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-HHh-CCEEEEEcCCC
Confidence 999999999999999999999999999999999999999964 7999999999975 666 99999999885
No 309
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.9e-36 Score=314.70 Aligned_cols=201 Identities=25% Similarity=0.390 Sum_probs=160.4
Q ss_pred EEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc
Q 003437 49 EFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS 128 (820)
Q Consensus 49 ~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~ 128 (820)
.+.|+.+.|+.. +.+|+|+||++++||+++|+|||||||||||++|+|+.+ +++|+|.++|.++...
T Consensus 2 ~~~~~~~~~~~~-----------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~ 68 (218)
T cd03290 2 QVTNGYFSWGSG-----------LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEP 68 (218)
T ss_pred eeeeeEEecCCC-----------CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCcccccc
Confidence 467888888532 359999999999999999999999999999999999985 4689999999876431
Q ss_pred -------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCC
Q 003437 129 -------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATH-------TYIGNE 194 (820)
Q Consensus 129 -------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~ig~~ 194 (820)
..++.++|++|++.+++ .|++||+.+... ... ++..++++.++|.+..+ +.. +.
T Consensus 69 ~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~ 136 (218)
T cd03290 69 SFEATRSRNRYSVAYAAQKPWLLN-ATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEI-GE 136 (218)
T ss_pred cccccchhhcceEEEEcCCCcccc-ccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCc-cc
Confidence 12456899999998884 699999987531 111 12345556666644322 111 12
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVE--KVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~--~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
.+..|||||||||+||++|+.+|++|||||||+|||+.++..+++ +++.+.+.|.|+|+++|+++. + ..||++++|
T Consensus 137 ~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l 214 (218)
T cd03290 137 RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-PHADWIIAM 214 (218)
T ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-hhCCEEEEe
Confidence 356799999999999999999999999999999999999999998 677776678999999999975 5 469999999
Q ss_pred eCCe
Q 003437 273 ARGR 276 (820)
Q Consensus 273 ~~G~ 276 (820)
++|.
T Consensus 215 ~~G~ 218 (218)
T cd03290 215 KDGS 218 (218)
T ss_pred cCCC
Confidence 9884
No 310
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.5e-36 Score=308.56 Aligned_cols=191 Identities=24% Similarity=0.329 Sum_probs=161.4
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|++++|.+ +.++ ++|+++++||+++|+|+||||||||+++|+|+.+ +++|+|.++|.++..
T Consensus 2 l~~~~l~~~~~~------------~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 66 (195)
T PRK13541 2 LSLHQLQFNIEQ------------KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ--PSSGNIYYKNCNINN 66 (195)
T ss_pred eEEEEeeEEECC------------cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCcccCh
Confidence 789999999853 2255 4999999999999999999999999999999875 468999999998754
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 003437 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRV 207 (820)
Q Consensus 128 ~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv 207 (820)
.. ++.++|++|++.+++.+||+||+.+..... . ..+++.++++.+++.+..++.++ .||||||||+
T Consensus 67 ~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~-----~---~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rl 132 (195)
T PRK13541 67 IA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIY-----N---SAETLYAAIHYFKLHDLLDEKCY-----SLSSGMQKIV 132 (195)
T ss_pred hh-hhhEEeccCCcCCCccCCHHHHHHHHHHhc-----c---cHHHHHHHHHHcCCHhhhccChh-----hCCHHHHHHH
Confidence 22 345899999988888899999998865432 1 23467788999999877776654 6999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEE
Q 003437 208 SIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRI 269 (820)
Q Consensus 208 ~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 269 (820)
+||++|+.+|++|||||||+|||+.++..+.+.|+++.++|+|+|+++|+++. +. .+|-+
T Consensus 133 ~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i~-~~~~~ 192 (195)
T PRK13541 133 AIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS-IK-SAQIL 192 (195)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccc-cc-hhhee
Confidence 99999999999999999999999999999999998877779999999999974 33 36654
No 311
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.7e-37 Score=299.40 Aligned_cols=221 Identities=28% Similarity=0.417 Sum_probs=192.1
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECC-Ee
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDG-KP 124 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G-~~ 124 (820)
..|+++||+++|++ .++|+++||++.+||+-+|||||||||||+|++|+|..+ +.+|+|+++| .+
T Consensus 4 ~iL~~~~vsVsF~G------------F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr--p~~G~v~f~g~~d 69 (249)
T COG4674 4 IILYLDGVSVSFGG------------FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR--PQEGEVLFDGDTD 69 (249)
T ss_pred ceEEEeceEEEEcc------------eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC--CCcceEEEcCchh
Confidence 46999999999975 349999999999999999999999999999999999764 5689999999 77
Q ss_pred CCCcc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 003437 125 VTTSY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPP-----SISRDEKKKRVYELLDQLGLRSATHTYIGNEG 195 (820)
Q Consensus 125 ~~~~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~ 195 (820)
+.... .+..+|-=||.|..|+.+||+|||..+.....+- .....+.+++++++|+..||.+.++...+
T Consensus 70 l~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~--- 146 (249)
T COG4674 70 LTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA--- 146 (249)
T ss_pred hccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh---
Confidence 76422 2445788899999999999999999886432110 01123446789999999999999998877
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.||-||||++.|++-|+++|++|+||||++|+-.....+.-++|+.++. +.+|+++.||+.. +.+++|+|.+|++|
T Consensus 147 --~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~F-vr~~A~~VTVlh~G 222 (249)
T COG4674 147 --LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGF-VREIADKVTVLHEG 222 (249)
T ss_pred --hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHHH-HHHhhheeEEEecc
Confidence 5999999999999999999999999999999999999999999999986 5899999999997 89999999999999
Q ss_pred eEEEEcCccchh
Q 003437 276 RLVYMGSPVALP 287 (820)
Q Consensus 276 ~iv~~G~~~~~~ 287 (820)
.+...|+.+++.
T Consensus 223 ~VL~EGsld~v~ 234 (249)
T COG4674 223 SVLAEGSLDEVQ 234 (249)
T ss_pred ceeecccHHHhh
Confidence 999999987664
No 312
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-36 Score=349.86 Aligned_cols=217 Identities=21% Similarity=0.377 Sum_probs=178.5
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.+ +.+|+++|+++++||+++|+||||||||||+|+|+|+.+ +++|+|.++|+++
T Consensus 249 ~~i~~~~l~~~~--------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 312 (491)
T PRK10982 249 VILEVRNLTSLR--------------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKI 312 (491)
T ss_pred cEEEEeCccccc--------------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEEC
Confidence 369999999862 138999999999999999999999999999999999885 4689999999987
Q ss_pred CCc----cccceEEEEccCC---CCCCCCCHHHHHHHHH-H-hcCCCC-CCHHHHHHHHHHHHHHcCCC-ccccccccCC
Q 003437 126 TTS----YMKMVSSYVMQDD---QLFPMLTVFETFMFAA-E-VRLPPS-ISRDEKKKRVYELLDQLGLR-SATHTYIGNE 194 (820)
Q Consensus 126 ~~~----~~~~~~gyv~Q~~---~l~~~lTV~e~l~~~~-~-~~~~~~-~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~ 194 (820)
... ..++.++|++|+. .+++.+|+.+|+.+.. . ...... .+....++++.++++.+++. +..++.++
T Consensus 313 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 390 (491)
T PRK10982 313 NNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIG-- 390 (491)
T ss_pred CCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccc--
Confidence 532 1245589999985 4788888887743321 0 000001 12334456788999999995 45666665
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
+|||||||||+||++|+.+|+||||||||+|||+.++..++++|++++++|.|||++|||++. +..+||++++|++
T Consensus 391 ---~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~-~~~~~d~v~~l~~ 466 (491)
T PRK10982 391 ---SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPE-LLGITDRILVMSN 466 (491)
T ss_pred ---cCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHH-HHhhCCEEEEEEC
Confidence 699999999999999999999999999999999999999999999998889999999999985 7889999999999
Q ss_pred CeEEEEcCcc
Q 003437 275 GRLVYMGSPV 284 (820)
Q Consensus 275 G~iv~~G~~~ 284 (820)
|+++..++++
T Consensus 467 g~i~~~~~~~ 476 (491)
T PRK10982 467 GLVAGIVDTK 476 (491)
T ss_pred CEEEEEEccc
Confidence 9999877654
No 313
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.8e-36 Score=389.07 Aligned_cols=215 Identities=22% Similarity=0.319 Sum_probs=183.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+.. .+++|+|+|++|++||.+||+|+||||||||+++|.|++. +.+|+|.+||.++.
T Consensus 1234 ~I~f~nVsf~Y~~~----------~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~di~ 1301 (1495)
T PLN03232 1234 SIKFEDVHLRYRPG----------LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCDVA 1301 (1495)
T ss_pred cEEEEEEEEEECCC----------CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEEhh
Confidence 59999999999532 2359999999999999999999999999999999999985 46899999999986
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-------SATHTYIGNEGR 196 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~ 196 (820)
. ...|++++|||||+.+|+. |++|||.+.. ..++ +.+.++++..++. +..|+.+|+. .
T Consensus 1302 ~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~-G 1369 (1495)
T PLN03232 1302 KFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHND----ADLWEALERAHIKDVIDRNPFGLDAEVSEG-G 1369 (1495)
T ss_pred hCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCH----HHHHHHHHHcCCHHHHHhCcCCCCceecCC-C
Confidence 4 3467889999999999987 9999997542 1233 3455566665553 4568888754 3
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..||||||||++|||||+++|+|||||||||+||+.+...|.+.|++.. +++|+|+++|+++. +. .||+|++|++|+
T Consensus 1370 ~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t-i~-~~DrIlVL~~G~ 1446 (1495)
T PLN03232 1370 ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT-II-DCDKILVLSSGQ 1446 (1495)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-HH-hCCEEEEEECCE
Confidence 5799999999999999999999999999999999999999999999874 47999999999975 44 499999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
+++.|+++++++
T Consensus 1447 ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1447 VLEYDSPQELLS 1458 (1495)
T ss_pred EEEECCHHHHHh
Confidence 999999998864
No 314
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-36 Score=351.06 Aligned_cols=209 Identities=25% Similarity=0.391 Sum_probs=174.3
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||||+|+|+++ +++|+|.++|.
T Consensus 2 l~i~~ls~~~~~------------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~~---- 63 (530)
T PRK15064 2 LSTANITMQFGA------------KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE--PSAGNVSLDPN---- 63 (530)
T ss_pred EEEEEEEEEeCC------------cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC----
Confidence 889999999953 249999999999999999999999999999999999885 46899999873
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHH-hc-----------CCC-C----------------CCHHHHHHHHHHHH
Q 003437 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAE-VR-----------LPP-S----------------ISRDEKKKRVYELL 178 (820)
Q Consensus 128 ~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~-~~-----------~~~-~----------------~~~~~~~~~v~~~l 178 (820)
..++|++|++.+++.+||+|++.++.. .+ .+. . ....+.++++.+++
T Consensus 64 ----~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 139 (530)
T PRK15064 64 ----ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELL 139 (530)
T ss_pred ----CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 358999999989999999999987531 00 000 0 00012345788999
Q ss_pred HHcCCCccc-cccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 003437 179 DQLGLRSAT-HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQ 257 (820)
Q Consensus 179 ~~lgL~~~~-~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~ 257 (820)
+.+||.+.. +..++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.++|++ .|.|||+++|+
T Consensus 140 ~~~gl~~~~~~~~~~-----~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd 211 (530)
T PRK15064 140 LGVGIPEEQHYGLMS-----EVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHD 211 (530)
T ss_pred HhCCCChhHhcCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCC
Confidence 999997643 34444 6999999999999999999999999999999999999999999863 58999999999
Q ss_pred ccHHHHhhcCEEEEEeCCeE-EEEcCccchh
Q 003437 258 PSYRIQMLLDRIIVLARGRL-VYMGSPVALP 287 (820)
Q Consensus 258 ~~~~i~~~~D~v~lL~~G~i-v~~G~~~~~~ 287 (820)
++. +.++||++++|++|++ ++.|++++..
T Consensus 212 ~~~-~~~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 212 RHF-LNSVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred HHH-HHhhcceEEEEeCCEEEEecCCHHHHH
Confidence 985 7889999999999999 4889887664
No 315
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.2e-36 Score=352.42 Aligned_cols=211 Identities=27% Similarity=0.359 Sum_probs=175.1
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++ ++.+|+|+||+|++||+++|+||||||||||||+|+|+++ +++|+|.+++
T Consensus 5 ~~l~i~~l~~~y~~-----------~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~--p~~G~i~~~~--- 68 (556)
T PRK11819 5 YIYTMNRVSKVVPP-----------KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFEGEARPAP--- 68 (556)
T ss_pred EEEEEeeEEEEeCC-----------CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecC---
Confidence 46999999999952 1349999999999999999999999999999999999885 4689999974
Q ss_pred CCccccceEEEEccCCCCCCCCCHHHHHHHHHH-hc-----C-----CCCCCH----------------------HHHHH
Q 003437 126 TTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAE-VR-----L-----PPSISR----------------------DEKKK 172 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~-~~-----~-----~~~~~~----------------------~~~~~ 172 (820)
...+|||+|++.+++.+||.||+.++.. .+ . ...... .+..+
T Consensus 69 -----~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (556)
T PRK11819 69 -----GIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDS 143 (556)
T ss_pred -----CCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHH
Confidence 2458999999999999999999987532 10 0 000000 01245
Q ss_pred HHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEE
Q 003437 173 RVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVL 252 (820)
Q Consensus 173 ~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi 252 (820)
+++++++.+||.. .++.++ .|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++. .|||
T Consensus 144 ~~~~~l~~~gl~~-~~~~~~-----~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tvi 214 (556)
T PRK11819 144 QLEIAMDALRCPP-WDAKVT-----KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVV 214 (556)
T ss_pred HHHHHHHhCCCCc-ccCchh-----hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEE
Confidence 6888999999964 566665 699999999999999999999999999999999999999999999873 5999
Q ss_pred EEEcCccHHHHhhcCEEEEEeCCeEE-EEcCccchh
Q 003437 253 MTIHQPSYRIQMLLDRIIVLARGRLV-YMGSPVALP 287 (820)
Q Consensus 253 ~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~~~ 287 (820)
++||+++. +..+||+|++|++|+++ +.|+.++..
T Consensus 215 iisHd~~~-~~~~~d~i~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 215 AVTHDRYF-LDNVAGWILELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred EEeCCHHH-HHhhcCeEEEEeCCEEEEecCCHHHHH
Confidence 99999975 78899999999999986 788876543
No 316
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.4e-36 Score=388.27 Aligned_cols=216 Identities=24% Similarity=0.334 Sum_probs=184.5
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|... ..++|+|+|++|+|||.+||+|+||||||||+++|.|++. +.+|+|++||.++
T Consensus 1236 g~I~f~nVsf~Y~~~----------~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~dI 1303 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPE----------LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCDI 1303 (1622)
T ss_pred CcEEEEEEEEEeCCC----------CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEec
Confidence 359999999999532 1359999999999999999999999999999999999985 4689999999998
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYIGNEG 195 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~ 195 (820)
.. ...|++++|||||+.+|+. |++|||.++. ..++ +.+.++++..++ ++..|+.+|+.
T Consensus 1304 ~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~td----eei~~Al~~a~l~~~I~~lp~GLdt~Vge~- 1371 (1622)
T PLN03130 1304 SKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHND----ADLWESLERAHLKDVIRRNSLGLDAEVSEA- 1371 (1622)
T ss_pred ccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCCH----HHHHHHHHHcCcHHHHHhCccccCccccCC-
Confidence 65 3467889999999999987 9999997642 1233 335555555544 34678888764
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
...||||||||++|||||+++|+|||||||||+||+.+...|.+.|++.. +++|+|+++|+++. +. .||||++|++|
T Consensus 1372 G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t-I~-~~DrIlVLd~G 1448 (1622)
T PLN03130 1372 GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT-II-DCDRILVLDAG 1448 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH-HH-hCCEEEEEECC
Confidence 35799999999999999999999999999999999999999999999875 48999999999985 54 49999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+++++++
T Consensus 1449 ~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1449 RVVEFDTPENLLS 1461 (1622)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999999874
No 317
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.1e-36 Score=356.87 Aligned_cols=188 Identities=31% Similarity=0.526 Sum_probs=159.7
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+|+|+.+ +++|+|+|+++++||.+||+||||||||||+|+|+|+.+ +.+|+|.+||.++
T Consensus 333 ~~I~~~~vsf~Y~~~-----------~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~--p~~G~I~i~g~~i 399 (529)
T TIGR02868 333 PTLELRDLSFGYPGS-----------PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD--PLQGEVTLDGVSV 399 (529)
T ss_pred ceEEEEEEEEecCCC-----------CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEh
Confidence 359999999999632 249999999999999999999999999999999999985 4689999999987
Q ss_pred CC--ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCC
Q 003437 126 TT--SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-------SATHTYIGNEGR 196 (820)
Q Consensus 126 ~~--~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~ 196 (820)
.. ..+++.++||+|++.+|+. |++|||.++.. ..++ +++.++++..++. +..||.+|+.+
T Consensus 400 ~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~~-----~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige~G- 468 (529)
T TIGR02868 400 SSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGRP-----DATD----EELWAALERVGLADWLRSLPDGLDTVLGEGG- 468 (529)
T ss_pred hhHHHHHHhheEEEccCcccccc-cHHHHHhccCC-----CCCH----HHHHHHHHHcCCHHHHHhCcccccchhcccc-
Confidence 64 3456789999999999987 99999998621 1233 3455666665553 45689998754
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCc
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQP 258 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 258 (820)
..||||||||++|||||+++|++|+||||||+||+.+...|.+.|+++. +++|+|+++|++
T Consensus 469 ~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 469 ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 4699999999999999999999999999999999999999999999864 479999999985
No 318
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-36 Score=312.18 Aligned_cols=194 Identities=29% Similarity=0.437 Sum_probs=167.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|..+.. .+ ......+++||||+|++||.++|+|+||||||||-|+|.|++. +++|+|+++|+++.
T Consensus 4 ll~v~~l~k~f~~~~~-~~--~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~--pt~G~i~f~g~~i~ 78 (268)
T COG4608 4 LLEVKNLKKYFPVGKG-FG--KKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE--PTSGEILFEGKDIT 78 (268)
T ss_pred eEEEeccEEEEecccc-cC--cccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC--CCCceEEEcCcchh
Confidence 5999999999975431 00 0112479999999999999999999999999999999999985 57899999999865
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChHHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSGGerq 205 (820)
... +++..+++.++|+.+||.. .++ ++|++|||||||
T Consensus 79 ~~~-------------------------------------~~~~~~~v~elL~~Vgl~~~~~~-----ryPhelSGGQrQ 116 (268)
T COG4608 79 KLS-------------------------------------KEERRERVLELLEKVGLPEEFLY-----RYPHELSGGQRQ 116 (268)
T ss_pred hcc-------------------------------------hhHHHHHHHHHHHHhCCCHHHhh-----cCCcccCchhhh
Confidence 321 2345678999999999865 333 456789999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
|++|||||+.+|+++++|||+|+||...+.+++++|+++.++ |.|.++++||.+. +..++||+.+|+.|+||+.|+.+
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~v-v~~isdri~VMy~G~iVE~g~~~ 195 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSV-VRYISDRIAVMYLGKIVEIGPTE 195 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHh-hhhhcccEEEEecCceeEecCHH
Confidence 999999999999999999999999999999999999999864 9999999999984 88899999999999999999998
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 196 ~~~~ 199 (268)
T COG4608 196 EVFS 199 (268)
T ss_pred HHhh
Confidence 8864
No 319
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.1e-35 Score=319.86 Aligned_cols=202 Identities=25% Similarity=0.419 Sum_probs=162.7
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...|+++|+++. . +.+|+|+|++|++||+++|+||||||||||+++|+|+++ +.+|+|.++|
T Consensus 37 ~~~l~i~nls~~--~------------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~--p~~G~I~i~g-- 98 (282)
T cd03291 37 DNNLFFSNLCLV--G------------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE--PSEGKIKHSG-- 98 (282)
T ss_pred CCeEEEEEEEEe--c------------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC--
Confidence 345999999985 1 249999999999999999999999999999999999885 4689999988
Q ss_pred CCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCCCCC
Q 003437 125 VTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT-------HTYIGNEGRR 197 (820)
Q Consensus 125 ~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~ig~~~~~ 197 (820)
.++|++|++.+++. ||+||+.+.... .. .++.+.++.+++.+.. ++.++ ..+.
T Consensus 99 --------~i~yv~q~~~l~~~-tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~-~~~~ 158 (282)
T cd03291 99 --------RISFSSQFSWIMPG-TIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLG-EGGI 158 (282)
T ss_pred --------EEEEEeCccccccc-CHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceec-CCCC
Confidence 27999999988875 999999874311 11 1223344444443322 22222 2345
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKV-KDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L-~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
.||||||||++||++|+.+|++|||||||+|||+.++..+.+.+ +.+. ++.|||+++|++.. + ..||++++|++|+
T Consensus 159 ~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~l~~G~ 235 (282)
T cd03291 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHEGS 235 (282)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999865 5554 57999999999975 4 5799999999999
Q ss_pred EEEEcCccchh
Q 003437 277 LVYMGSPVALP 287 (820)
Q Consensus 277 iv~~G~~~~~~ 287 (820)
+++.|+++++.
T Consensus 236 i~~~g~~~~~~ 246 (282)
T cd03291 236 SYFYGTFSELQ 246 (282)
T ss_pred EEEECCHHHHH
Confidence 99999987764
No 320
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.6e-37 Score=311.90 Aligned_cols=234 Identities=30% Similarity=0.418 Sum_probs=194.3
Q ss_pred eEEEEEEEEEECcccccccc---------cccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceE
Q 003437 47 GLEFKNLSYSIMKKQKKDGV---------WITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGS 117 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~---------~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~ 117 (820)
.+..+||++.|....+..+. .......+++|+||+|++|++++++|||||||||+||+|+|++. |++|+
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--p~~G~ 80 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--PTSGK 80 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc--cCCCe
Confidence 37788888887542211110 11123458999999999999999999999999999999999986 46899
Q ss_pred EEECCEeCCC--ccccceEEEEc-cCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 003437 118 VRIDGKPVTT--SYMKMVSSYVM-QDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNE 194 (820)
Q Consensus 118 I~i~G~~~~~--~~~~~~~gyv~-Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~ 194 (820)
|.++|.+.-. ..+-+.+++|+ |.-.+...+.+.|.+.....++ .++.++.+++.+.+.+.|+|+...+..+
T Consensus 81 v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~v--- 154 (325)
T COG4586 81 VRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPV--- 154 (325)
T ss_pred EEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhh---
Confidence 9999987532 12234456665 5556777777888887766554 4778889999999999999998888776
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
|.||-|||.|+.||.+|+++|+||||||||-|||..++..|.+.|++..+ ++.||+++||+.+. +..+||||++|+
T Consensus 155 --r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~d-i~~lc~rv~~I~ 231 (325)
T COG4586 155 --RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDD-IATLCDRVLLID 231 (325)
T ss_pred --hhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhh-HHHhhhheEEee
Confidence 57999999999999999999999999999999999999999999999975 59999999999985 899999999999
Q ss_pred CCeEEEEcCccchhhhhh
Q 003437 274 RGRLVYMGSPVALPAHLA 291 (820)
Q Consensus 274 ~G~iv~~G~~~~~~~~f~ 291 (820)
.|+++|.|+.+++.+.|.
T Consensus 232 ~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 232 QGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred CCcEeecccHHHHHHHhC
Confidence 999999999988876654
No 321
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.5e-36 Score=349.24 Aligned_cols=217 Identities=24% Similarity=0.308 Sum_probs=174.8
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+.+ .+++|+|+++|+++
T Consensus 259 ~~l~~~~l~~~~~~------------~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~-~~~~G~i~~~g~~~ 325 (490)
T PRK10938 259 PRIVLNNGVVSYND------------RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP-QGYSNDLTLFGRRR 325 (490)
T ss_pred ceEEEeceEEEECC------------eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-cccCCeEEEecccC
Confidence 46999999999953 249999999999999999999999999999999999753 22589999999876
Q ss_pred CCc----cccceEEEEccCCCCCC--CCCHHHHHHHHHHh--cCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 003437 126 TTS----YMKMVSSYVMQDDQLFP--MLTVFETFMFAAEV--RLPPSISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGR 196 (820)
Q Consensus 126 ~~~----~~~~~~gyv~Q~~~l~~--~lTV~e~l~~~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~ 196 (820)
... ..++.++|++|++.++. ..|+++++.+.... ....... .+.+++++++++.+||.+ ..++.++
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~---- 400 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPFH---- 400 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCchh----
Confidence 321 13456899999876543 35777776543211 0000112 233567899999999987 6777765
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEEcCccHHHHh-hcCEEEEEeC
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTG-SIVLMTIHQPSYRIQM-LLDRIIVLAR 274 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvi~~~H~~~~~i~~-~~D~v~lL~~ 274 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++| .|||++||+++. +.+ +||++++|++
T Consensus 401 -~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~-~~~~~~d~v~~l~~ 478 (490)
T PRK10938 401 -SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAED-APACITHRLEFVPD 478 (490)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhh-hhhhhheeEEEecC
Confidence 699999999999999999999999999999999999999999999998775 579999999975 665 5899999999
Q ss_pred CeEEEEcC
Q 003437 275 GRLVYMGS 282 (820)
Q Consensus 275 G~iv~~G~ 282 (820)
|++++.-.
T Consensus 479 G~i~~~~~ 486 (490)
T PRK10938 479 GDIYRYVQ 486 (490)
T ss_pred CceEEeec
Confidence 99887543
No 322
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=8.5e-36 Score=296.92 Aligned_cols=163 Identities=32% Similarity=0.469 Sum_probs=143.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|++++|+++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++ +.+|+|.++|.
T Consensus 1 i~~~~~~~~~~~~-----------~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~---- 63 (166)
T cd03223 1 IELENLSLATPDG-----------RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRIGMPEG---- 63 (166)
T ss_pred CEEEEEEEEcCCC-----------CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCC----
Confidence 4789999998421 249999999999999999999999999999999999875 46899999873
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 003437 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRV 207 (820)
Q Consensus 128 ~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv 207 (820)
+.++|++|++.++ ..||+||+.+. . +..||||||||+
T Consensus 64 ----~~i~~~~q~~~~~-~~tv~~nl~~~---------------------------------~-----~~~LS~G~~~rv 100 (166)
T cd03223 64 ----EDLLFLPQRPYLP-LGTLREQLIYP---------------------------------W-----DDVLSGGEQQRL 100 (166)
T ss_pred ----ceEEEECCCCccc-cccHHHHhhcc---------------------------------C-----CCCCCHHHHHHH
Confidence 5689999998765 56999998642 1 236999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 208 SIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 208 ~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
+|||+|+.+|++|+|||||+|||+.++..+.+.|+++ +.|+|++||+++. ...||++++|++|
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~~--~~~~d~i~~l~~~ 163 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPSL--WKFHDRVLDLDGE 163 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChhH--HhhCCEEEEEcCC
Confidence 9999999999999999999999999999999999987 5899999999863 4689999999875
No 323
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-36 Score=306.84 Aligned_cols=219 Identities=27% Similarity=0.380 Sum_probs=186.0
Q ss_pred CCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCE
Q 003437 44 PGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK 123 (820)
Q Consensus 44 ~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~ 123 (820)
+.+.|+++|+++.|.+ ++||+|+|++|++||..+|+|||||||||||++++|...| .+|.+.+.|+
T Consensus 28 ~~~li~l~~v~v~r~g------------k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~p--ssg~~~~~G~ 93 (257)
T COG1119 28 NEPLIELKNVSVRRNG------------KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP--SSGDVTLLGR 93 (257)
T ss_pred CcceEEecceEEEECC------------EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCC--CCCceeeeee
Confidence 3456999999999865 4599999999999999999999999999999999998754 4899999999
Q ss_pred eCCC----ccccceEEEEccC--CCCCCCCCHHHHHHHHHH--hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 003437 124 PVTT----SYMKMVSSYVMQD--DQLFPMLTVFETFMFAAE--VRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEG 195 (820)
Q Consensus 124 ~~~~----~~~~~~~gyv~Q~--~~l~~~lTV~e~l~~~~~--~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~ 195 (820)
.... ...|+.+|||.-. ..+.+..+|+|-+.-+.. .-.......++..+++..+++.+|+.+.+|+..+
T Consensus 94 ~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~--- 170 (257)
T COG1119 94 RFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG--- 170 (257)
T ss_pred eccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh---
Confidence 8754 3467889999643 345566788887754432 1112212345667889999999999999999987
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART--GSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~--g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
.||-||||||.|||||+.+|++||||||++|||...++.+++.|.+++.. +.++|++||+.+ ++-..++++++|+
T Consensus 171 --~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~ 247 (257)
T COG1119 171 --SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLK 247 (257)
T ss_pred --hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEee
Confidence 59999999999999999999999999999999999999999999999865 899999999998 5888899999999
Q ss_pred CCeEEEEcC
Q 003437 274 RGRLVYMGS 282 (820)
Q Consensus 274 ~G~iv~~G~ 282 (820)
+|+++++|.
T Consensus 248 ~g~v~~~g~ 256 (257)
T COG1119 248 EGEVVAQGK 256 (257)
T ss_pred CCceeeccc
Confidence 999999874
No 324
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2.6e-36 Score=353.54 Aligned_cols=200 Identities=34% Similarity=0.515 Sum_probs=169.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+|+|+++ ++++|+|+|+++++||.++|+||||||||||+|+|+|+.+ +.+|+|.+||.++.
T Consensus 320 ~i~~~~v~f~y~~~----------~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~I~~~g~~i~ 387 (529)
T TIGR02857 320 SLEFSGLSVAYPGR----------RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD--PTEGSIAVNGVPLA 387 (529)
T ss_pred eEEEEEEEEECCCC----------CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEehh
Confidence 59999999999642 2359999999999999999999999999999999999885 46799999999886
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-------SATHTYIGNEGR 196 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~ 196 (820)
. ..+++.++||+|++.+|+. |++||+.++.. ..++ +.+.++++..++. +..||.+|+. .
T Consensus 388 ~~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~-g 456 (529)
T TIGR02857 388 DADADSWRDQIAWVPQHPFLFAG-TIAENIRLARP-----DASD----AEIRRALERAGLDEFVAALPQGLDTLIGEG-G 456 (529)
T ss_pred hCCHHHHHhheEEEcCCCcccCc-CHHHHHhccCC-----CCCH----HHHHHHHHHcCcHHHHHhCcccccchhccc-c
Confidence 4 3457789999999999986 99999987531 1222 3455666666654 3467888753 4
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
..||||||||++|||+|+++|++|+||||||+||+.+...+.+.|+++. +++|+|+++|+++. + +.||+|++|
T Consensus 457 ~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~-~-~~~d~i~~l 529 (529)
T TIGR02857 457 AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLAL-A-ERADRIVVL 529 (529)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-HhCCEEEeC
Confidence 5799999999999999999999999999999999999999999999985 58999999999964 4 679999875
No 325
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-36 Score=348.79 Aligned_cols=203 Identities=25% Similarity=0.388 Sum_probs=173.0
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||||+|+|+++ +++|+|.++|.
T Consensus 318 ~~l~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 381 (530)
T PRK15064 318 NALEVENLTKGFDN------------GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-- 381 (530)
T ss_pred ceEEEEeeEEeeCC------------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 36999999999953 249999999999999999999999999999999999875 46799999873
Q ss_pred CCccccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCChH
Q 003437 126 TTSYMKMVSSYVMQDDQ--LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSGG 202 (820)
+.+||++|++. +++.+||.|++.+... . ...+++++++++.+|+. +..++.++ .||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~~---~-----~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWRQ---E-----GDDEQAVRGTLGRLLFSQDDIKKSVK-----VLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhcc---C-----CccHHHHHHHHHHcCCChhHhcCccc-----ccCHH
Confidence 45899999864 5667899999864211 0 11235688999999994 56676665 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE-EEc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV-YMG 281 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G 281 (820)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||+.. +..+||++++|++|+++ +.|
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~-~~~~~d~i~~l~~g~i~~~~g 518 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDREF-VSSLATRIIEITPDGVVDFSG 518 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHHH-HHHhCCEEEEEECCeEEEcCC
Confidence 999999999999999999999999999999999999999887 4599999999974 78899999999999998 788
Q ss_pred Cccchh
Q 003437 282 SPVALP 287 (820)
Q Consensus 282 ~~~~~~ 287 (820)
+++++.
T Consensus 519 ~~~~~~ 524 (530)
T PRK15064 519 TYEEYL 524 (530)
T ss_pred CHHHHH
Confidence 776654
No 326
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1e-35 Score=349.62 Aligned_cols=205 Identities=22% Similarity=0.347 Sum_probs=170.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+|+|+++ +++|+|+|+++++||.++|+||||||||||+++|+|+++ +.+|+|.+||+++.
T Consensus 322 ~i~~~~v~f~y~~~-----------~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~~~ 388 (547)
T PRK10522 322 TLELRNVTFAYQDN-----------GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ--PQSGEILLDGKPVT 388 (547)
T ss_pred eEEEEEEEEEeCCC-----------CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECC
Confidence 59999999999632 248999999999999999999999999999999999885 46899999999986
Q ss_pred Cc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 127 TS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
.. ..++.++||+|++.+|+. |++|| . . ...++.+++.++.+++.+..+..-+......|||||
T Consensus 389 ~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~------~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq 454 (547)
T PRK10522 389 AEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G------K----PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQ 454 (547)
T ss_pred CCCHHHHhhheEEEecChhHHHH-hhccc---c------C----chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHH
Confidence 42 456789999999998876 88876 1 0 122346778889999876543211100124799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
|||++|||||+++|++|+|||||++||+.+...+.+.|.++.+ .++|+|+++|+++ ....||++++|++|++++.
T Consensus 455 ~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 455 KKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999987654 5899999999986 3567999999999999876
No 327
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=8.2e-36 Score=382.72 Aligned_cols=216 Identities=23% Similarity=0.343 Sum_probs=184.5
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|+.. ...+|+||||+|++||.+||+|+||||||||+++|.|++. +.+|+|++||.++
T Consensus 1307 G~I~f~nVsf~Y~~~----------~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~di 1374 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREG----------LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGREI 1374 (1560)
T ss_pred CeEEEEEEEEEeCCC----------CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEc
Confidence 359999999999642 1359999999999999999999999999999999999985 4679999999998
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-------ATHTYIGNEG 195 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~ 195 (820)
.. ..+|+.++||||++.+|+. ||+|||.... ..++ +.+.++++..||.+ ..|+.+|+.
T Consensus 1375 ~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge~- 1442 (1560)
T PTZ00243 1375 GAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EASS----AEVWAALELVGLRERVASESEGIDSRVLEG- 1442 (1560)
T ss_pred ccCCHHHHHhcceEECCCCccccc-cHHHHhCccc------CCCH----HHHHHHHHHCCChHHHhhCcccccccccCC-
Confidence 64 3467889999999999987 9999996421 1233 45667777777653 468888764
Q ss_pred CCCCChHHHHHHHHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 196 RRGVSGGERRRVSIGIDIIHK-PSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~-P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
...||||||||++|||||+++ |+|||||||||+||+.+...|.+.|++.. +++|||+++|+++. + ..||+|++|++
T Consensus 1443 G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~t-i-~~~DrIlVLd~ 1519 (1560)
T PTZ00243 1443 GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHT-V-AQYDKIIVMDH 1519 (1560)
T ss_pred cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHH-H-HhCCEEEEEEC
Confidence 357999999999999999996 89999999999999999999999999864 47999999999974 4 56999999999
Q ss_pred CeEEEEcCccchhh
Q 003437 275 GRLVYMGSPVALPA 288 (820)
Q Consensus 275 G~iv~~G~~~~~~~ 288 (820)
|++++.|++++++.
T Consensus 1520 G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1520 GAVAEMGSPRELVM 1533 (1560)
T ss_pred CEEEEECCHHHHHh
Confidence 99999999998864
No 328
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.6e-35 Score=306.69 Aligned_cols=194 Identities=17% Similarity=0.155 Sum_probs=160.9
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEE-ECCEeCCCccccceEEEEccCCCCCCCCCHHHH
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVR-IDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFET 152 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~-i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~ 152 (820)
+|+|||++|++||+++|+||||||||||+|+|+|+++ +.+|+|. ++|..+. +.+++.+++.+|++||
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--~~sG~i~~~~~~~~~----------~~~~~~l~~~ltv~en 69 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA--PDEGDFIGLRGDALP----------LGANSFILPGLTGEEN 69 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCCCEEEecCceec----------cccccccCCcCcHHHH
Confidence 7999999999999999999999999999999999875 4689997 7775431 2345678899999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 003437 153 FMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDST 232 (820)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~ 232 (820)
+.+....+. .+.++. .+.+.+.++|++..++.++ .||||||||++||++|+.+|+++||||||++||+.
T Consensus 70 l~~~~~~~~---~~~~~~---~~~~~~~~~l~~~~~~~~~-----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLYG---LDGDEF---SHFCYQLTQLEQCYTDRVS-----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHcC---CCHHHH---HHHHHHHhChhHHhhchHh-----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 998766431 233222 2334566788877777765 69999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchhhhhhc
Q 003437 233 SAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAG 292 (820)
Q Consensus 233 ~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~ 292 (820)
++..+.+.|.+..+ ++|+|+++|++.. +..+||++++|++|++++.|+.+++.++++.
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~~-~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNPRL-IKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCHHH-HHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 99999998865443 4689999999984 7789999999999999999999888766543
No 329
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.7e-35 Score=347.93 Aligned_cols=211 Identities=27% Similarity=0.359 Sum_probs=172.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ .+.+|+|+||+|++||+++|+|||||||||||++|+|+.+ +++|+|.+++
T Consensus 4 ~i~~~nls~~~~~-----------~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~--p~~G~i~~~~---- 66 (552)
T TIGR03719 4 IYTMNRVSKVVPP-----------KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFNGEARPAP---- 66 (552)
T ss_pred EEEEeeEEEecCC-----------CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecC----
Confidence 5999999999951 1249999999999999999999999999999999999875 4689999975
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHh-cC-----------CCCCCHH---------------------HHHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEV-RL-----------PPSISRD---------------------EKKKR 173 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~-~~-----------~~~~~~~---------------------~~~~~ 173 (820)
+..+|||+|++.+++.+||+||+.++... +. ......+ +...+
T Consensus 67 ----~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (552)
T TIGR03719 67 ----GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRK 142 (552)
T ss_pred ----CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 24589999999999999999999875321 00 0000010 01245
Q ss_pred HHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE
Q 003437 174 VYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLM 253 (820)
Q Consensus 174 v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~ 253 (820)
+.++++.+|+.. .++.++ .|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.|||+
T Consensus 143 ~~~~l~~~~l~~-~~~~~~-----~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIi 213 (552)
T TIGR03719 143 LEIAMDALRCPP-WDADVT-----KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVA 213 (552)
T ss_pred HHHHHhhCCCCc-ccCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEE
Confidence 677888888853 455554 69999999999999999999999999999999999999999999876 359999
Q ss_pred EEcCccHHHHhhcCEEEEEeCCeEE-EEcCccchhh
Q 003437 254 TIHQPSYRIQMLLDRIIVLARGRLV-YMGSPVALPA 288 (820)
Q Consensus 254 ~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~~~~ 288 (820)
+||++.. +..+||++++|++|+++ +.|+.++..+
T Consensus 214 isHd~~~-~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 214 VTHDRYF-LDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred EeCCHHH-HHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 9999985 78899999999999976 7788776543
No 330
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.2e-35 Score=312.15 Aligned_cols=179 Identities=25% Similarity=0.323 Sum_probs=152.4
Q ss_pred ceeeeeEEEe-----CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCC
Q 003437 74 LLHDISGQAI-----RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLT 148 (820)
Q Consensus 74 iL~~vs~~i~-----~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lT 148 (820)
.++|+++++. +||+++|+||||||||||+++|+|+++ +.+|+|.++|. .++|++|+...++.+|
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~--p~~G~i~~~g~---------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK--PDEGDIEIELD---------TVSYKPQYIKADYEGT 77 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCc---------eEEEecccccCCCCCC
Confidence 5677777665 799999999999999999999999885 46899999984 4799999987777789
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 003437 149 VFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSG 228 (820)
Q Consensus 149 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsg 228 (820)
|+|++.+...... . ....+.++++.+||.+..++.++ .|||||||||+||++|+.+|+++||||||++
T Consensus 78 v~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREVP-----ELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999976533110 1 12346788999999887777665 6999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 229 LDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 229 LD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
||+.++..+.++|+++++ .|+|||+++|++.. +..+||++++|+++.
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~-~~~~~d~i~~l~~~~ 193 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDIIM-IDYLADRLIVFEGEP 193 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEcCCC
Confidence 999999999999999986 48999999999974 778999999997643
No 331
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.1e-35 Score=382.43 Aligned_cols=216 Identities=24% Similarity=0.325 Sum_probs=184.2
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|+.. ...+|+|||++|+|||.+||+|+||||||||+++|.|++. +.+|+|.+||.++
T Consensus 1283 g~I~f~nVsf~Y~~~----------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~dI 1350 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED----------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLNI 1350 (1522)
T ss_pred CcEEEEEEEEEeCCC----------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEEc
Confidence 459999999999642 1359999999999999999999999999999999999885 4679999999998
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-------SATHTYIGNEG 195 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~ 195 (820)
.. ...|+.++|||||+.+|+. |++|||.... ..++ +.+.++++..++. +.+|+.+|+.
T Consensus 1351 ~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~- 1418 (1522)
T TIGR00957 1351 AKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSD----EEVWWALELAHLKTFVSALPDKLDHECAEG- 1418 (1522)
T ss_pred cccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCH----HHHHHHHHHcCcHHHHhhCccCCCceecCC-
Confidence 75 3467889999999999997 9999996321 1233 3355666666654 4578888763
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
...||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|||+++|+++. +. .||||++|++|
T Consensus 1419 G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~t-i~-~~DrIlVld~G 1495 (1522)
T TIGR00957 1419 GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNT-IM-DYTRVIVLDKG 1495 (1522)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-HH-hCCEEEEEECC
Confidence 35799999999999999999999999999999999999999999999864 47999999999975 44 59999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
+|++.|+++++++
T Consensus 1496 ~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1496 EVAEFGAPSNLLQ 1508 (1522)
T ss_pred EEEEECCHHHHHh
Confidence 9999999999875
No 332
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.8e-35 Score=347.93 Aligned_cols=211 Identities=22% Similarity=0.318 Sum_probs=172.8
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+|+|+++.. ..+.+|+|+|+++++||.++|+||||||||||+++|+|++. +++|+|.+||.++
T Consensus 336 ~~i~~~~v~f~y~~~~~-------~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~--p~~G~i~~~g~~i 406 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEG-------SEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI--PQEGEILLDGAAV 406 (555)
T ss_pred ceEEEEEEEEEeCCCCC-------CcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 35999999999964210 12359999999999999999999999999999999999885 4689999999998
Q ss_pred CCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc-cCCCCCCCCh
Q 003437 126 TTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYI-GNEGRRGVSG 201 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~i-g~~~~~~LSG 201 (820)
... ..++.++||+|++.+|.. |+++|+. ++..++++.++++.+++.+..+... |-+....|||
T Consensus 407 ~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n~~------------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSg 473 (555)
T TIGR01194 407 SADSRDDYRDLFSAIFADFHLFDD-LIGPDEG------------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALST 473 (555)
T ss_pred CCCCHHHHHhhCcEEccChhhhhh-hhhcccc------------cchhHHHHHHHHHHcCCchhhcccccccCCcccCCH
Confidence 652 356778999999999876 8888741 1123456778899999877544332 1122357999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVK-DIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~-~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
|||||++|||+|+.+|++|||||||++||+.+...+.+.+. .+..+|+|+|+++|+++ ..+.||+|++|++|++++.
T Consensus 474 Gq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999998764 45567899999999986 3468999999999999853
No 333
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.7e-35 Score=377.07 Aligned_cols=214 Identities=25% Similarity=0.412 Sum_probs=174.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEE-CCEeC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRI-DGKPV 125 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i-~G~~~ 125 (820)
.|+++||+++|+.+. ++++|+|+||+|++||++||+||||||||||+++|+|++. +++|+|++ +|.++
T Consensus 382 ~I~~~nVsf~Y~~~~---------~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~i~~g~~i 450 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRK---------DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD--PTEGDIIINDSHNL 450 (1466)
T ss_pred cEEEEEEEEEcCCCC---------CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc--CCCCeEEEeCCcch
Confidence 599999999996421 2359999999999999999999999999999999999985 46899999 56776
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcC----------CC-----------------------------
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRL----------PP----------------------------- 163 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~----------~~----------------------------- 163 (820)
.. ..+++.+|||+|++.+|+. ||+|||.++..... +.
T Consensus 451 ~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (1466)
T PTZ00265 451 KDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTT 529 (1466)
T ss_pred hhCCHHHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhccccc
Confidence 53 2356779999999999985 99999998631000 00
Q ss_pred CC---------CHHHHHHHHHHHHHHcCCC-------ccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 003437 164 SI---------SRDEKKKRVYELLDQLGLR-------SATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTS 227 (820)
Q Consensus 164 ~~---------~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPts 227 (820)
.. ......+.+.++++.+++. +..||.+|+. ...||||||||++|||||+++|+||||||||+
T Consensus 530 ~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~-g~~LSGGQkQRiaIARAll~~P~ILlLDEpTS 608 (1466)
T PTZ00265 530 DSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSN-ASKLSGGQKQRISIARAIIRNPKILILDEATS 608 (1466)
T ss_pred chhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 00 0001234577777777654 4457777754 56899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 228 GLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 228 gLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
+||+.++..|.+.|+++++ +|+|+|+++|+++. + +.||+|++|++|
T Consensus 609 aLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~-i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 609 SLDNKSEYLVQKTINNLKGNENRITIIIAHRLST-I-RYANTIFVLSNR 655 (1466)
T ss_pred ccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH-H-HhCCEEEEEeCC
Confidence 9999999999999999976 58999999999974 4 689999999987
No 334
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.2e-35 Score=291.53 Aligned_cols=219 Identities=30% Similarity=0.430 Sum_probs=178.9
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
++++|+.+.+.+.. ..++++|+++|++|..|+++.|+|.||||||||+|+|+|.+. +++|+|.++|.+++.
T Consensus 2 i~~~~~~~~f~~g~-------~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~--~t~G~I~Idg~dVtk 72 (263)
T COG1101 2 ISLSNATKTFFKGT-------PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK--PTSGQILIDGVDVTK 72 (263)
T ss_pred cccccceeeecCCC-------hhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc--cCCceEEECceeccc
Confidence 55677777765432 235679999999999999999999999999999999999885 568999999999986
Q ss_pred cccc---ceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHHc--CCCccccccccCCCCC
Q 003437 128 SYMK---MVSSYVMQDDQ--LFPMLTVFETFMFAAEVRLPPSISR---DEKKKRVYELLDQL--GLRSATHTYIGNEGRR 197 (820)
Q Consensus 128 ~~~~---~~~gyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~ig~~~~~ 197 (820)
.... ..++-|+||+. ..|.||++||+.++..--...+.+. ..+++...+-++.+ ||++..++.+|
T Consensus 73 ~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig----- 147 (263)
T COG1101 73 KSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG----- 147 (263)
T ss_pred CCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----
Confidence 4322 23567899984 6999999999998764311112222 22334444555554 67888888888
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
-|||||||-+++++|.++.|+||+|||-|++|||.++..|++.-.++.+ .+.|.+++||+++. +..+-+|+++|++|+
T Consensus 148 lLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~-Al~yG~RlImLh~G~ 226 (263)
T COG1101 148 LLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMED-ALDYGNRLIMLHSGK 226 (263)
T ss_pred hccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHH-HHhhCCeEEEEeCCe
Confidence 4999999999999999999999999999999999999999999999875 58899999999986 778999999999999
Q ss_pred EEEEc
Q 003437 277 LVYMG 281 (820)
Q Consensus 277 iv~~G 281 (820)
||.+-
T Consensus 227 IvlDv 231 (263)
T COG1101 227 IVLDV 231 (263)
T ss_pred EEEEc
Confidence 99753
No 335
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=5.5e-35 Score=374.82 Aligned_cols=215 Identities=20% Similarity=0.313 Sum_probs=184.7
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|+.. .+.+|+||||+|++||.+||+|+||||||||+++|.|++. .+|+|++||.++
T Consensus 1216 g~I~f~nVs~~Y~~~----------~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~di 1282 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEA----------GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVSW 1282 (1490)
T ss_pred CeEEEEEEEEEeCCC----------CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEc
Confidence 469999999999642 2469999999999999999999999999999999999973 479999999998
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-------SATHTYIGNEG 195 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~ 195 (820)
.. ...|+.++||||++.+|+. ||+|||.... ..+ ++.+.++++.++|. +.+|+.+++.
T Consensus 1283 ~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~- 1350 (1490)
T TIGR01271 1283 NSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG- 1350 (1490)
T ss_pred ccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCccccccccccC-
Confidence 74 3467889999999999997 9999996431 122 34567777877764 3568888753
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
...||||||||++|||||+++|+|||||||||+||..+...|.+.|++.. +++|||+++|+++. + ..||+|++|++|
T Consensus 1351 G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~t-i-~~~DrIlvL~~G 1427 (1490)
T TIGR01271 1351 GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEA-L-LECQQFLVIEGS 1427 (1490)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEECC
Confidence 35799999999999999999999999999999999999999999999875 47999999999974 4 459999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
+|++.|+++++++
T Consensus 1428 ~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1428 SVKQYDSIQKLLN 1440 (1490)
T ss_pred EEEEeCCHHHHHc
Confidence 9999999988863
No 336
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=9.4e-35 Score=341.77 Aligned_cols=204 Identities=25% Similarity=0.407 Sum_probs=169.5
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++ +.+|+|+|++|++||+++|+||||||||||+++|+|+++ +++|+|.+++.
T Consensus 323 ~~l~~~~l~~~~~~------------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 386 (556)
T PRK11819 323 KVIEAENLSKSFGD------------RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET-- 386 (556)
T ss_pred eEEEEEeEEEEECC------------eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 46999999999853 249999999999999999999999999999999999885 46899999542
Q ss_pred CCccccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChHH
Q 003437 126 TTSYMKMVSSYVMQDD-QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSGGe 203 (820)
..+||++|+. .+++.+||.||+.+...... .... ...+.++++.+||.+ ..++.++ .|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKVG-----VLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCchh-----hCCHHH
Confidence 1489999996 68888999999988653221 1111 223557899999964 4566665 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC-CeEE-EEc
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR-GRLV-YMG 281 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~-G~iv-~~G 281 (820)
||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. | |||++|||+.. +..+||++++|++ |+++ +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~~-~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRWF-LDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHHH-HHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999999873 4 89999999984 7889999999986 7776 455
Q ss_pred Cccc
Q 003437 282 SPVA 285 (820)
Q Consensus 282 ~~~~ 285 (820)
+.++
T Consensus 527 ~~~~ 530 (556)
T PRK11819 527 NFQE 530 (556)
T ss_pred CHHH
Confidence 5433
No 337
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1e-34 Score=341.25 Aligned_cols=198 Identities=27% Similarity=0.373 Sum_probs=171.5
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++|+++.|++ ..|+++|++|++||+++|+||||||||||+|+|+|+++ +++|+|.++
T Consensus 339 ~~l~~~~ls~~~~~-------------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~---- 399 (590)
T PRK13409 339 TLVEYPDLTKKLGD-------------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE---- 399 (590)
T ss_pred eEEEEcceEEEECC-------------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----
Confidence 46999999998842 15899999999999999999999999999999999985 468999986
Q ss_pred CCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 126 TTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
..++|++|+..+++.+||+|++.+.... ... ...+.++++.+||.+..++.++ .|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~~-----~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNVK-----DLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCcc-----cCCHHHHH
Confidence 1479999998888889999999875321 111 2356889999999887777775 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
||+||++|+.+|++|||||||+|||+.++..+.++|++++++ |.|||++|||+.. +..+|||+++|+ |++...|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~-~~~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYM-IDYISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEc-Ccceeeeec
Confidence 999999999999999999999999999999999999999874 8999999999975 788999999995 588777763
No 338
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.4e-34 Score=340.12 Aligned_cols=202 Identities=24% Similarity=0.415 Sum_probs=168.1
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++ +.+|+|+|++|++||+++|+|||||||||||++|+|+++ +++|+|.+++.
T Consensus 321 ~~l~~~~l~~~~~~------------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~-- 384 (552)
T TIGR03719 321 KVIEAENLSKGFGD------------KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET-- 384 (552)
T ss_pred eEEEEeeEEEEECC------------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc--
Confidence 46999999999853 249999999999999999999999999999999999875 46899998542
Q ss_pred CCccccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChHH
Q 003437 126 TTSYMKMVSSYVMQDD-QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSGGe 203 (820)
..+||++|+. .+++.+||.|++.++.... ..... ..++.++++.+||.+ ..++.++ .|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQKKVG-----QLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcCchh-----hCCHHH
Confidence 1589999986 4788899999998864321 11111 224567899999964 4566665 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC-CeEE-EEc
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR-GRLV-YMG 281 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~-G~iv-~~G 281 (820)
||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|||++|||+.. +..+||++++|++ |+++ +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~~-~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRWF-LDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHHH-HHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999983 389999999975 7889999999987 5776 445
Q ss_pred Cc
Q 003437 282 SP 283 (820)
Q Consensus 282 ~~ 283 (820)
+.
T Consensus 525 ~~ 526 (552)
T TIGR03719 525 NY 526 (552)
T ss_pred CH
Confidence 44
No 339
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=8.1e-35 Score=309.15 Aligned_cols=200 Identities=26% Similarity=0.389 Sum_probs=165.2
Q ss_pred EEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEE-----------E
Q 003437 52 NLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVR-----------I 120 (820)
Q Consensus 52 nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~-----------i 120 (820)
||+++|+++ +.+|+|+| .+++||+++|+||||||||||||+|+|+++ +++|+|. +
T Consensus 5 ~~~~~y~~~-----------~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~--p~~G~I~~~~~~~~~~~~~ 70 (255)
T cd03236 5 EPVHRYGPN-----------SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLK--PNLGKFDDPPDWDEILDEF 70 (255)
T ss_pred CcceeecCc-----------chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEeeccccchhhhhc
Confidence 677887432 24899999 599999999999999999999999999985 4689996 7
Q ss_pred CCEeCCCc--c-cc--ceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 003437 121 DGKPVTTS--Y-MK--MVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEG 195 (820)
Q Consensus 121 ~G~~~~~~--~-~~--~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~ 195 (820)
+|+++... . .+ ..++|++|+..+++. ++.+++.+.. .....++.+.++++.+||++..++.+.
T Consensus 71 ~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l--------~~~~~~~~~~~~l~~~gl~~~~~~~~~--- 138 (255)
T cd03236 71 RGSELQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELL--------KKKDERGKLDELVDQLELRHVLDRNID--- 138 (255)
T ss_pred cCchhhhhhHHhhhcccceeeecchhccCch-HHHHHHHHHh--------chhHHHHHHHHHHHHcCCchhhcCChh---
Confidence 88876432 1 11 236899999888875 8888887642 122345678899999999887776654
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.||||||||++||++|+.+|+++||||||++||+.++..+.+.|++++++|+|||+++|++.. +..+||++++| +|
T Consensus 139 --~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~-~~~~ad~i~~l-~~ 214 (255)
T cd03236 139 --QLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAV-LDYLSDYIHCL-YG 214 (255)
T ss_pred --hCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHHhCCEEEEE-CC
Confidence 699999999999999999999999999999999999999999999998889999999999974 77789999999 56
Q ss_pred eEEEEc
Q 003437 276 RLVYMG 281 (820)
Q Consensus 276 ~iv~~G 281 (820)
++.+.|
T Consensus 215 ~~~~~~ 220 (255)
T cd03236 215 EPGAYG 220 (255)
T ss_pred CCCcce
Confidence 566544
No 340
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.2e-34 Score=279.86 Aligned_cols=229 Identities=23% Similarity=0.393 Sum_probs=196.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|.......+ .....+++.|||++++|+.+||+|.||||||||.|+|+|.++ |++|+|++||+++.
T Consensus 4 LLeV~nLsKtF~~~~~lf~---r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~--PTsG~il~n~~~L~ 78 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFR---RQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGEILINDHPLH 78 (267)
T ss_pred hhhhhhhhhhhhhhhhhhh---hhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC--CCCceEEECCcccc
Confidence 4899999999865432211 233458999999999999999999999999999999999986 46899999999985
Q ss_pred Cc---cccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCC
Q 003437 127 TS---YMKMVSSYVMQDDQ--LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRRGVS 200 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LS 200 (820)
.. ...+++-++|||+. +.|.+.+.+-|..+.++ ...++++.+.+++.+.|+.+||- +.++-++ ..||
T Consensus 79 ~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l--~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~-----~~la 151 (267)
T COG4167 79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRL--NTDLEPEQRRKQIFETLRMVGLLPDHANYYP-----HMLA 151 (267)
T ss_pred ccchHhhhhheeeeecCCccccChhhhhhhHhcchhhh--cccCChHHHHHHHHHHHHHhccCccccccch-----hhcC
Confidence 32 34567889999985 78889999988887654 44678888999999999999995 4455544 4799
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
-||||||++||||+.+|+++|.||...+||...+-++.++..+|.+ .|.+-|.++.+... +..++|+|+||++|++|+
T Consensus 152 ~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~-iKHi~D~viVM~EG~vvE 230 (267)
T COG4167 152 PGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGM-IKHISDQVLVMHEGEVVE 230 (267)
T ss_pred chhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhH-hhhhcccEEEEecCceee
Confidence 9999999999999999999999999999999999999999999986 59999999999984 889999999999999999
Q ss_pred EcCccchhh
Q 003437 280 MGSPVALPA 288 (820)
Q Consensus 280 ~G~~~~~~~ 288 (820)
.|++.+++.
T Consensus 231 ~G~t~~v~a 239 (267)
T COG4167 231 RGSTADVLA 239 (267)
T ss_pred cCChhhhhc
Confidence 999988754
No 341
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-34 Score=339.43 Aligned_cols=201 Identities=22% Similarity=0.387 Sum_probs=169.4
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.|++ +.+|+|+||+|.+||+++|+||||||||||||+|+|+++ +++|+|.+++.
T Consensus 311 ~~l~~~~l~~~y~~------------~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~-- 374 (638)
T PRK10636 311 PLLKMEKVSAGYGD------------RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG-- 374 (638)
T ss_pred ceEEEEeeEEEeCC------------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--
Confidence 35999999999953 249999999999999999999999999999999999885 46899999741
Q ss_pred CCccccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChH
Q 003437 126 TTSYMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSGG 202 (820)
..+||++|+. .+.+..||.+++.. .. .....+++.++|+.+++.. ..++.++ .||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~~~~~-----~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVTEETR-----RFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhcCchh-----hCCHH
Confidence 2589999974 35566788877531 11 1123457889999999963 5677765 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE-EEc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV-YMG 281 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G 281 (820)
|||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ . .|||++|||+.. +..+||++++|++|+++ +.|
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~-gtvi~vSHd~~~-~~~~~d~i~~l~~G~i~~~~g 510 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E-GALVVVSHDRHL-LRSTTDDLYLVHDGKVEPFDG 510 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CeEEEEeCCHHH-HHHhCCEEEEEECCEEEEcCC
Confidence 999999999999999999999999999999999999999987 3 499999999975 78899999999999997 788
Q ss_pred Cccch
Q 003437 282 SPVAL 286 (820)
Q Consensus 282 ~~~~~ 286 (820)
+.++.
T Consensus 511 ~~~~~ 515 (638)
T PRK10636 511 DLEDY 515 (638)
T ss_pred CHHHH
Confidence 77654
No 342
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-35 Score=314.76 Aligned_cols=220 Identities=31% Similarity=0.447 Sum_probs=188.4
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...+.|+|++|.|.. .+++|+++|+++.+|+.+|++||||+||||++++|-..+. ..+|.|.+||++
T Consensus 260 ~g~v~F~~V~F~y~~-----------~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD--~~sG~I~id~qd 326 (497)
T COG5265 260 LGAVAFINVSFAYDP-----------RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD--VNSGSITIDGQD 326 (497)
T ss_pred cceEEEEEEEeeccc-----------cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC--CcCceEEEcchh
Confidence 445999999999964 3579999999999999999999999999999999999885 468999999999
Q ss_pred CCC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCCCC
Q 003437 125 VTT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKR-----VYELLDQLGLRSATHTYIGNEGR 196 (820)
Q Consensus 125 ~~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~ig~~~~ 196 (820)
+.. ...++.+|.||||..||.+ |...|+.++.. ..+.+|..+. +.+.++ .+++..++.+|+++.
T Consensus 327 ir~vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr~-----~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vgergl 398 (497)
T COG5265 327 IRDVTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGRP-----DATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGERGL 398 (497)
T ss_pred HHHhHHHHHHHHhCcCcccceehhh-hHHHHHhccCc-----cccHHHHHHHHHHhhhhHHHH--hCchhhhcccchhee
Confidence 853 3567889999999999987 99999998743 2344444332 233333 457889999998776
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
+ |||||||||+|||+++.+|++|++||.||+||..+.+++...|++++ .|+|.+++.|..+. +. -+|.|++|++|+
T Consensus 399 k-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-i~-~adeiivl~~g~ 474 (497)
T COG5265 399 K-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-II-DADEIIVLDNGR 474 (497)
T ss_pred e-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-cc-CCceEEEeeCCE
Confidence 4 99999999999999999999999999999999999999999999987 58999999999986 44 389999999999
Q ss_pred EEEEcCccchhhh
Q 003437 277 LVYMGSPVALPAH 289 (820)
Q Consensus 277 iv~~G~~~~~~~~ 289 (820)
|++.|+.++++..
T Consensus 475 i~erg~h~~ll~~ 487 (497)
T COG5265 475 IVERGTHEELLAA 487 (497)
T ss_pred EEecCcHHHHHHc
Confidence 9999999888754
No 343
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.1e-33 Score=337.44 Aligned_cols=199 Identities=25% Similarity=0.429 Sum_probs=167.5
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++ +.+|+|+||+|.+|++++|+||||||||||||+|+|+++ +++|+|.+ |.++
T Consensus 318 ~~l~~~~l~~~~~~------------~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~ 382 (635)
T PRK11147 318 IVFEMENVNYQIDG------------KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL 382 (635)
T ss_pred ceEEEeeeEEEECC------------eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc
Confidence 35999999999853 249999999999999999999999999999999999875 46899998 4322
Q ss_pred CCccccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCChHH
Q 003437 126 TTSYMKMVSSYVMQDD-QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSGGe 203 (820)
.+||++|+. .+++.+||.|++.+..... ... ....++.++++.+++. +..++.++ .|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPVK-----ALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChhh-----hCCHHH
Confidence 489999985 5889999999998753211 011 1234678899999996 45677765 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe-CCeEEEE
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA-RGRLVYM 280 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~-~G~iv~~ 280 (820)
||||+||++|+.+|++|||||||+|||+.+...+.++|+++ +.|||++|||... +..+||++++|+ +|+++.+
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~~-~~~~~d~i~~l~~~g~i~~~ 519 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQF-VDNTVTECWIFEGNGKIGRY 519 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHHH-HHHhcCEEEEEeCCCeEEEc
Confidence 99999999999999999999999999999999999999876 4599999999875 788999999998 7988653
No 344
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.1e-33 Score=285.99 Aligned_cols=226 Identities=24% Similarity=0.338 Sum_probs=194.1
Q ss_pred eEEEEEEEEEECccccc------------ccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCC
Q 003437 47 GLEFKNLSYSIMKKQKK------------DGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSL 114 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~------------~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~ 114 (820)
.|+++||++.|.....+ .+........+|+||||++++||.++|+|+||||||||||+|+|.++ |+
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~--Pt 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK--PT 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC--CC
Confidence 48899999988643100 01112345679999999999999999999999999999999999986 46
Q ss_pred ceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 003437 115 EGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNE 194 (820)
Q Consensus 115 ~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~ 194 (820)
+|+|.++|+-..... - .--+.|.+|.+||+.+-..+. ++++++.+++++++++.-+|.+..|.++.
T Consensus 81 ~G~v~v~G~v~~li~--l-------g~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pvk-- 146 (249)
T COG1134 81 SGKVKVTGKVAPLIE--L-------GAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPVK-- 146 (249)
T ss_pred CceEEEcceEehhhh--c-------ccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCchh--
Confidence 899999997432111 1 123456799999999987764 57899999999999999999999998885
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
.+|-||+-|+++|.+...+|++||+||-.+-.|+.-++...+.++++.++++|||+++|+++. +.++||++++|++
T Consensus 147 ---tYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~-I~~~Cd~~i~l~~ 222 (249)
T COG1134 147 ---TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGA-IKQYCDRAIWLEH 222 (249)
T ss_pred ---hccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHH-HHHhcCeeEEEeC
Confidence 699999999999999999999999999999999999999999999998888999999999985 9999999999999
Q ss_pred CeEEEEcCccchhhhhhc
Q 003437 275 GRLVYMGSPVALPAHLAG 292 (820)
Q Consensus 275 G~iv~~G~~~~~~~~f~~ 292 (820)
|++.+.|+++++.+++..
T Consensus 223 G~i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 223 GQIRMEGSPEEVIPAYEE 240 (249)
T ss_pred CEEEEcCCHHHHHHHHHH
Confidence 999999999999887654
No 345
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1.8e-33 Score=273.71 Aligned_cols=144 Identities=34% Similarity=0.539 Sum_probs=131.4
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|+++.|.+ ..+|+++|+++++||+++|+||||||||||+++|+|+++ +.+|+|.++|+
T Consensus 1 l~~~~l~~~~~~------------~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~~~---- 62 (144)
T cd03221 1 IELENLSKTYGG------------KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE--PDEGIVTWGST---- 62 (144)
T ss_pred CEEEEEEEEECC------------ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCe----
Confidence 478999998853 249999999999999999999999999999999999885 46899999984
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 003437 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRV 207 (820)
Q Consensus 128 ~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv 207 (820)
+.++|++| ||+||+||+
T Consensus 63 ----~~i~~~~~-----------------------------------------------------------lS~G~~~rv 79 (144)
T cd03221 63 ----VKIGYFEQ-----------------------------------------------------------LSGGEKMRL 79 (144)
T ss_pred ----EEEEEEcc-----------------------------------------------------------CCHHHHHHH
Confidence 35789998 999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 208 SIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 208 ~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
+|||+|+.+|+++++||||+|||+.++..+.+.|+++ +.|+|+++|+++. +..+||++++|++|+
T Consensus 80 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~~-~~~~~d~v~~l~~g~ 144 (144)
T cd03221 80 ALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRYF-LDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHHH-HHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999999999987 4799999999974 778899999999985
No 346
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-33 Score=334.23 Aligned_cols=207 Identities=24% Similarity=0.376 Sum_probs=164.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+||||+|.+|++++|+||||||||||||+|+|.+. +++|+|.++|..
T Consensus 2 i~i~nls~~~g~------------~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~--pd~G~I~~~~~~--- 64 (638)
T PRK10636 2 IVFSSLQIRRGV------------RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS--ADGGSYTFPGNW--- 64 (638)
T ss_pred EEEEEEEEEeCC------------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCCC---
Confidence 889999999954 349999999999999999999999999999999999875 468999998742
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHH-----------------------HhcC-CCCCCHHHHHHHHHHHHHHcCC
Q 003437 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAA-----------------------EVRL-PPSISRDEKKKRVYELLDQLGL 183 (820)
Q Consensus 128 ~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~-----------------------~~~~-~~~~~~~~~~~~v~~~l~~lgL 183 (820)
.++|++|+...+. .|+.+.+.-.. .+.. .......+...++.++++.+||
T Consensus 65 -----~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl 138 (638)
T PRK10636 65 -----QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGF 138 (638)
T ss_pred -----EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Confidence 3688888643332 35555432110 0000 0000111234578899999999
Q ss_pred C-ccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHH
Q 003437 184 R-SATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRI 262 (820)
Q Consensus 184 ~-~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 262 (820)
. +..++.++ .|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||... +
T Consensus 139 ~~~~~~~~~~-----~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~~-l 209 (638)
T PRK10636 139 SNEQLERPVS-----DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRDF-L 209 (638)
T ss_pred CchhhcCchh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHHH-H
Confidence 7 46677776 59999999999999999999999999999999999999999998876 5699999999975 7
Q ss_pred HhhcCEEEEEeCCeEE-EEcCccch
Q 003437 263 QMLLDRIIVLARGRLV-YMGSPVAL 286 (820)
Q Consensus 263 ~~~~D~v~lL~~G~iv-~~G~~~~~ 286 (820)
..+||++++|++|+++ |.|+.+..
T Consensus 210 ~~~~d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 210 DPIVDKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred HHhcCEEEEEeCCEEEEecCCHHHH
Confidence 8899999999999996 56765543
No 347
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=4.6e-33 Score=332.98 Aligned_cols=206 Identities=21% Similarity=0.340 Sum_probs=166.2
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.|+++ +.+|+|+||+|++||+++|+||||||||||||+|+|+++ +++|+|.+++
T Consensus 507 ~~L~~~~ls~~y~~~-----------~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~--- 570 (718)
T PLN03073 507 PIISFSDASFGYPGG-----------PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSA--- 570 (718)
T ss_pred ceEEEEeeEEEeCCC-----------CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECC---
Confidence 469999999999531 248999999999999999999999999999999999885 4679999865
Q ss_pred CCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChHHH
Q 003437 126 TTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSGGer 204 (820)
+..+||++|+. .+.+++.++..+......+ ... .+++.++|+.+||.+ ..++.++ .||||||
T Consensus 571 -----~~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~~~-----~LSgGqk 633 (718)
T PLN03073 571 -----KVRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQPMY-----TLSGGQK 633 (718)
T ss_pred -----ceeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCCcc-----ccCHHHH
Confidence 23589999985 3445666664432211111 111 356788999999974 4565554 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE-EEcCc
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV-YMGSP 283 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~~ 283 (820)
|||+||++|+.+|++|||||||+|||+.+...+++.|++. . .|||++|||+.. +..+||++++|++|+++ +.|+.
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~-gtvIivSHd~~~-i~~~~drv~~l~~G~i~~~~g~~ 709 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--Q-GGVLMVSHDEHL-ISGSVDELWVVSEGKVTPFHGTF 709 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CEEEEEECCHHH-HHHhCCEEEEEECCEEEEeCCCH
Confidence 9999999999999999999999999999999998888765 3 499999999985 78899999999999998 77776
Q ss_pred cchhh
Q 003437 284 VALPA 288 (820)
Q Consensus 284 ~~~~~ 288 (820)
++..+
T Consensus 710 ~~~~~ 714 (718)
T PLN03073 710 HDYKK 714 (718)
T ss_pred HHHHH
Confidence 65433
No 348
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=9.7e-34 Score=347.14 Aligned_cols=226 Identities=28% Similarity=0.451 Sum_probs=206.1
Q ss_pred CCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCE
Q 003437 44 PGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK 123 (820)
Q Consensus 44 ~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~ 123 (820)
....+..+|+++.|+.+. + +++++|+.+++||+.+++|+|||||||++|+|.|..+ +++|+++++|.
T Consensus 561 ~~~~~~~~~L~k~y~~~~----------~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~--~t~G~a~i~g~ 627 (885)
T KOG0059|consen 561 YSSALVLNNLSKVYGGKD----------G-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK--PTSGEALIKGH 627 (885)
T ss_pred ccceEEEcceeeeecchh----------h-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc--CCcceEEEecC
Confidence 346799999999996532 1 8999999999999999999999999999999999875 56899999999
Q ss_pred eCCCc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 003437 124 PVTTS----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 124 ~~~~~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~L 199 (820)
++... ..++.+||+||+|.+++.+|.+|+|.+.++++ ++++.+.++.++.+++.+||.+.+|+.++ .+
T Consensus 628 ~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~y 699 (885)
T KOG0059|consen 628 DITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVR-----TY 699 (885)
T ss_pred ccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchh-----hC
Confidence 98642 25677999999999999999999999999987 56777788889999999999999999986 59
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
|||+|||+++|.||+.+|++++|||||+|+||.+++.+.++++++.+.|+.||+|||.++ +...+|||+.+|.+|++..
T Consensus 700 SgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aImv~G~l~c 778 (885)
T KOG0059|consen 700 SGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIMVIGQLRC 778 (885)
T ss_pred CCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhheeecCeeEE
Confidence 999999999999999999999999999999999999999999999998889999999997 5899999999999999999
Q ss_pred EcCccchhhhhh
Q 003437 280 MGSPVALPAHLA 291 (820)
Q Consensus 280 ~G~~~~~~~~f~ 291 (820)
.|+++++...|.
T Consensus 779 iGs~q~LKsrfG 790 (885)
T KOG0059|consen 779 IGSPQELKSRYG 790 (885)
T ss_pred ecChHHHHhhcC
Confidence 999999987764
No 349
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.8e-33 Score=280.71 Aligned_cols=155 Identities=27% Similarity=0.445 Sum_probs=134.5
Q ss_pred EEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccc
Q 003437 51 KNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYM 130 (820)
Q Consensus 51 ~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~ 130 (820)
.||+++|++ +.+++++ +++++||+++|+||||||||||+|+|+|+++ +++|+|.++|.+
T Consensus 4 ~~l~~~~~~------------~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~------ 62 (177)
T cd03222 4 PDCVKRYGV------------FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI--PNGDNDEWDGIT------ 62 (177)
T ss_pred CCeEEEECC------------EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCcEEEECCEE------
Confidence 578888853 2478885 8999999999999999999999999999985 468999999863
Q ss_pred cceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHH
Q 003437 131 KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIG 210 (820)
Q Consensus 131 ~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia 210 (820)
++|++|+.. ||||||||++||
T Consensus 63 ---i~~~~q~~~--------------------------------------------------------LSgGq~qrv~la 83 (177)
T cd03222 63 ---PVYKPQYID--------------------------------------------------------LSGGELQRVAIA 83 (177)
T ss_pred ---EEEEcccCC--------------------------------------------------------CCHHHHHHHHHH
Confidence 678887432 999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE--cCccch
Q 003437 211 IDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTG-SIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM--GSPVAL 286 (820)
Q Consensus 211 ~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~--G~~~~~ 286 (820)
|+|+.+|++++|||||+|||+.++..+.+.|+++++++ .|||+++|++.. +..+||++++|+++-.++. |.|...
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~-~~~~~d~i~~l~~~~~~~~~~~~~~~~ 161 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAV-LDYLSDRIHVFEGEPGVYGIASQPKGT 161 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHH-HHHhCCEEEEEcCCCccceeccCCcch
Confidence 99999999999999999999999999999999998765 999999999974 7778999999998766654 655433
No 350
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.8e-33 Score=359.70 Aligned_cols=207 Identities=28% Similarity=0.448 Sum_probs=171.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.++++|++++|+.+ .++++|+|+|+++++||.++|+||||||||||+++|.|.+++ .+|.+.
T Consensus 614 ~I~~~~vsF~y~~~---------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~--~~G~i~------- 675 (1495)
T PLN03232 614 AISIKNGYFSWDSK---------TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH--AETSSV------- 675 (1495)
T ss_pred cEEEEeeEEEcCCC---------CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcc--cCCCEE-------
Confidence 59999999999642 124599999999999999999999999999999999998853 567653
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCCCCC
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYIGNEGRRGV 199 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~L 199 (820)
..++.++||+|++.+++. ||+|||.|+.. .++ ++++++++..+| ++..+|.+|+.+. .|
T Consensus 676 --~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~------~~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~-~L 741 (1495)
T PLN03232 676 --VIRGSVAYVPQVSWIFNA-TVRENILFGSD------FES----ERYWRAIDVTALQHDLDLLPGRDLTEIGERGV-NI 741 (1495)
T ss_pred --EecCcEEEEcCccccccc-cHHHHhhcCCc------cCH----HHHHHHHHHhCCHHHHHhCCCCCCceecCCCc-cc
Confidence 245678999999999986 99999998742 222 334445554444 4556889987654 69
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK-VKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~-L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
|||||||++||||+.++|+|+|||||||+||+.++.++++. ++.+ .+++|+|++||+++. ...||+|++|++|+++
T Consensus 742 SGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~~--l~~aD~Ii~L~~G~i~ 818 (1495)
T PLN03232 742 SGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLHF--LPLMDRIILVSEGMIK 818 (1495)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChhh--HHhCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999775 4443 368999999999974 4679999999999999
Q ss_pred EEcCccchhh
Q 003437 279 YMGSPVALPA 288 (820)
Q Consensus 279 ~~G~~~~~~~ 288 (820)
+.|+.+++..
T Consensus 819 ~~Gt~~eL~~ 828 (1495)
T PLN03232 819 EEGTFAELSK 828 (1495)
T ss_pred EecCHHHHHh
Confidence 9999988764
No 351
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=5.6e-33 Score=278.28 Aligned_cols=156 Identities=23% Similarity=0.348 Sum_probs=131.9
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
+.+|+|+||++++|++++|+||||||||||||+|.+ .+|+|.++|... ...++.++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~--~~~~~~~~~~~q------------ 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLP--KFSRNKLIFIDQ------------ 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCccc--ccccccEEEEhH------------
Confidence 469999999999999999999999999999999864 369999988732 122334678776
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHhcC--CCEEEEeCCCCC
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEGRRGVSGGERRRVSIGIDIIHK--PSLLFLDEPTSG 228 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSGGerqRv~ia~aL~~~--P~lLllDEPtsg 228 (820)
.++++.++|... .++.+ +.||||||||++||++|+.+ |++|||||||+|
T Consensus 68 -----------------------~~~l~~~~L~~~~~~~~~-----~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~ 119 (176)
T cd03238 68 -----------------------LQFLIDVGLGYLTLGQKL-----STLSGGELQRVKLASELFSEPPGTLFILDEPSTG 119 (176)
T ss_pred -----------------------HHHHHHcCCCccccCCCc-----CcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCccc
Confidence 235677888653 55554 47999999999999999999 999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 229 LDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 229 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
||+.++..+.+.|+++++.|+|||++||+++. + +.||++++|.+|+.
T Consensus 120 LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~-~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 120 LHQQDINQLLEVIKGLIDLGNTVILIEHNLDV-L-SSADWIIDFGPGSG 166 (176)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEECCCCC
Confidence 99999999999999998789999999999974 4 57999999976543
No 352
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.2e-33 Score=263.26 Aligned_cols=193 Identities=28% Similarity=0.409 Sum_probs=167.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCceEEEECCEeC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG-SLEGSVRIDGKPV 125 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~-~~~G~I~i~G~~~ 125 (820)
.+.++||+...++ .-+|-++|++|.+||++.||||||||||||+..+.|.+.+. ..+|++++|++++
T Consensus 2 ~l~l~nvsl~l~g------------~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l 69 (213)
T COG4136 2 MLCLKNVSLRLPG------------SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRL 69 (213)
T ss_pred ceeeeeeeecCCC------------ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeec
Confidence 4788999976543 34899999999999999999999999999999999988653 4689999999998
Q ss_pred CCc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 126 TTS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 126 ~~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
+.. ..++.+|.++||+.+||+++|.+||.|+.. ..+.-+.++..++..|++.||....+... .+||||||
T Consensus 70 ~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp----~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----~tlSGGQr 140 (213)
T COG4136 70 DMLPAAQRQIGILFQDALLFPHLSVGQNLLFALP----ATLKGNARRNAANAALERSGLDGAFHQDP-----ATLSGGQR 140 (213)
T ss_pred cccchhhhheeeeecccccccccccccceEEecC----cccccHHHHhhHHHHHHHhccchhhhcCh-----hhcCcchH
Confidence 753 356789999999999999999999998753 33444566778899999999998877654 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEEcCccH
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI-ARTGSIVLMTIHQPSY 260 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l-~~~g~tvi~~~H~~~~ 260 (820)
-||++-|+|+..|+.++||||+|.||..-+.++.+..-.- ...|..+|.+|||...
T Consensus 141 ARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~D 197 (213)
T COG4136 141 ARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQD 197 (213)
T ss_pred HHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccccc
Confidence 9999999999999999999999999999999999987654 4569999999999764
No 353
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=4.1e-33 Score=333.08 Aligned_cols=199 Identities=21% Similarity=0.287 Sum_probs=162.1
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|+++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.+++
T Consensus 451 ~i~~~nv~~~~~~~-----------~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~--~~~G~i~~~~---- 513 (659)
T TIGR00954 451 GIKFENIPLVTPNG-----------DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP--VYGGRLTKPA---- 513 (659)
T ss_pred eEEEEeeEEECCCC-----------CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEeecC----
Confidence 59999999988531 249999999999999999999999999999999999875 4579998764
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc----CCCCCCCChH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIG----NEGRRGVSGG 202 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig----~~~~~~LSGG 202 (820)
++.++||+|++.+++. |++||+.++....... .+...++++.++++.+||.+..++..| ......||||
T Consensus 514 ----~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgG 586 (659)
T TIGR00954 514 ----KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMK--RRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGG 586 (659)
T ss_pred ----CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhh--ccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHH
Confidence 4568999999998887 9999998764321000 001123467889999999876554321 0123579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
||||++|||+|+++|++|||||||+|||+.+...+.+.|++ .|+|+|+++|+++. .+.||++++|+.
T Consensus 587 qkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~--~~~~d~il~l~~ 653 (659)
T TIGR00954 587 EKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSL--WKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHH--HHhCCEEEEEeC
Confidence 99999999999999999999999999999999999998876 38999999999974 467999999964
No 354
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.7e-33 Score=358.82 Aligned_cols=206 Identities=27% Similarity=0.425 Sum_probs=172.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCc-eEEEECCEeC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE-GSVRIDGKPV 125 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~-G~I~i~G~~~ 125 (820)
.|+++|++++|+.. .++.+|+|+|++|++||+++|+||||||||||+++|.|.++ +.+ |+|.+
T Consensus 614 ~I~~~nvsf~y~~~---------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~GG~I~l----- 677 (1622)
T PLN03130 614 AISIKNGYFSWDSK---------AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP--PRSDASVVI----- 677 (1622)
T ss_pred ceEEEeeEEEccCC---------CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc--cCCCceEEE-----
Confidence 59999999999642 12458999999999999999999999999999999999885 467 89974
Q ss_pred CCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCCCC
Q 003437 126 TTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYIGNEGRRG 198 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~ 198 (820)
+..++||+|++.+++. ||+|||.|+.. .+ +++++++++..+| ++..+|.+|+.+ ..
T Consensus 678 -----~~~Iayv~Q~p~Lfng-TIreNI~fg~~------~d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G-~~ 740 (1622)
T PLN03130 678 -----RGTVAYVPQVSWIFNA-TVRDNILFGSP------FD----PERYERAIDVTALQHDLDLLPGGDLTEIGERG-VN 740 (1622)
T ss_pred -----cCeEEEEcCccccCCC-CHHHHHhCCCc------cc----HHHHHHHHHHhCcHHHHHhCCCcccccccCCC-CC
Confidence 4568999999999986 99999998742 12 2345555555554 345688898765 46
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVE-KVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
|||||||||+||||+..+|+|+|||||||+||+.+...+++ .++.+. +|+|+|++||+++. ...+|+|++|++|++
T Consensus 741 LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~--l~~aD~Ii~L~~G~i 817 (1622)
T PLN03130 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLHF--LSQVDRIILVHEGMI 817 (1622)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHhH--HHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999998875 455553 58999999999963 567999999999999
Q ss_pred EEEcCccchhh
Q 003437 278 VYMGSPVALPA 288 (820)
Q Consensus 278 v~~G~~~~~~~ 288 (820)
++.|+.+++..
T Consensus 818 ~e~Gt~~eL~~ 828 (1622)
T PLN03130 818 KEEGTYEELSN 828 (1622)
T ss_pred EEeCCHHHHHh
Confidence 99999988753
No 355
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.4e-32 Score=327.95 Aligned_cols=207 Identities=26% Similarity=0.367 Sum_probs=161.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+||||+|++|++++|+||||||||||||+|+|++. +++|+|.++|..
T Consensus 3 ~l~i~~ls~~~~~------------~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~--p~~G~I~~~~~~-- 66 (635)
T PRK11147 3 LISIHGAWLSFSD------------APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL--LDDGRIIYEQDL-- 66 (635)
T ss_pred EEEEeeEEEEeCC------------ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEeCCCC--
Confidence 4999999999953 249999999999999999999999999999999999875 468999998631
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHH------------------------------HHHhcCC-CCCCHHHHHHHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMF------------------------------AAEVRLP-PSISRDEKKKRVY 175 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~------------------------------~~~~~~~-~~~~~~~~~~~v~ 175 (820)
.++|++|++......+|.+++.. ...+... ......+...++.
T Consensus 67 ------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 140 (635)
T PRK11147 67 ------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRIN 140 (635)
T ss_pred ------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 24677775433223455554321 1100000 0000112345788
Q ss_pred HHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEE
Q 003437 176 ELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTI 255 (820)
Q Consensus 176 ~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~ 255 (820)
++++.+||.. ++.++ .|||||||||+||++|+.+|+||||||||++||+.+...+.+.|+++. .|||++|
T Consensus 141 ~~l~~lgl~~--~~~~~-----~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivs 210 (635)
T PRK11147 141 EVLAQLGLDP--DAALS-----SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFIS 210 (635)
T ss_pred HHHHhCCCCC--CCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEe
Confidence 9999999963 55554 699999999999999999999999999999999999999999999873 5999999
Q ss_pred cCccHHHHhhcCEEEEEeCCeEE-EEcCccch
Q 003437 256 HQPSYRIQMLLDRIIVLARGRLV-YMGSPVAL 286 (820)
Q Consensus 256 H~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~~ 286 (820)
||... +..+||+|++|++|+++ +.|+.++.
T Consensus 211 Hd~~~-l~~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 211 HDRSF-IRNMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred CCHHH-HHHhcCeEEEEECCEEEEecCCHHHH
Confidence 99975 78899999999999997 55776544
No 356
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-32 Score=263.75 Aligned_cols=219 Identities=25% Similarity=0.394 Sum_probs=172.3
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
.+.|++++||+.|... .-.+||||.+.|||+++|+|+|||||||||++|++++.| +.|+|.+.-.+
T Consensus 4 ~PLL~V~~lsk~Yg~~------------~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p--~~G~v~Y~~r~ 69 (258)
T COG4107 4 KPLLSVSGLSKLYGPG------------KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTP--DAGTVTYRMRD 69 (258)
T ss_pred CcceeehhhhhhhCCC------------cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCC--CCCeEEEEcCC
Confidence 3469999999999653 368999999999999999999999999999999999864 67999987533
Q ss_pred ---CC-----Ccc----ccceEEEEccCCC--CCC----CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 003437 125 ---VT-----TSY----MKMVSSYVMQDDQ--LFP----MLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA 186 (820)
Q Consensus 125 ---~~-----~~~----~~~~~gyv~Q~~~--l~~----~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 186 (820)
.+ +.. .+..=|+|.|++. +-. .-.+.|-++-... | .-...++.+.++|+++.++..
T Consensus 70 ~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~-R-----HYG~iR~~a~~WL~~VEI~~~ 143 (258)
T COG4107 70 GQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA-R-----HYGNIRAEAQDWLEEVEIDLD 143 (258)
T ss_pred CCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhh-h-----hhhhHHHHHHHHHHhcccCcc
Confidence 21 111 1122389999874 322 2234444432211 1 112345677889999988643
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhh
Q 003437 187 THTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQML 265 (820)
Q Consensus 187 ~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~ 265 (820)
+ + ++.|+..|||++||+.|||-|++.|+++|+||||.|||..-+.+++++++.|..+ |.+++++|||..- +.-+
T Consensus 144 R---i-DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~V-arLl 218 (258)
T COG4107 144 R---I-DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV-ARLL 218 (258)
T ss_pred c---c-cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHH-HHHh
Confidence 2 3 4567899999999999999999999999999999999999999999999999865 9999999999863 5667
Q ss_pred cCEEEEEeCCeEEEEcCccchhh
Q 003437 266 LDRIIVLARGRLVYMGSPVALPA 288 (820)
Q Consensus 266 ~D~v~lL~~G~iv~~G~~~~~~~ 288 (820)
+||+++|++|++++.|-++.+++
T Consensus 219 a~rlmvmk~g~vve~GLTDrvLD 241 (258)
T COG4107 219 ADRLMVMKQGQVVESGLTDRVLD 241 (258)
T ss_pred hhcceeecCCCEecccccccccc
Confidence 99999999999999998877653
No 357
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.7e-32 Score=266.71 Aligned_cols=153 Identities=39% Similarity=0.664 Sum_probs=136.9
Q ss_pred EEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc-
Q 003437 50 FKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS- 128 (820)
Q Consensus 50 ~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~- 128 (820)
++|+++.|.+ +.+|+++|+++++|++++|+|+||||||||+++|+|++. +.+|+|+++|.++...
T Consensus 2 ~~~~~~~~~~------------~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~--~~~G~i~~~~~~~~~~~ 67 (157)
T cd00267 2 IENLSFRYGG------------RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLP 67 (157)
T ss_pred eEEEEEEeCC------------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccCC
Confidence 6789988853 249999999999999999999999999999999999885 4689999999987531
Q ss_pred --cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 129 --YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 129 --~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
..++.++|++| |||||+||
T Consensus 68 ~~~~~~~i~~~~q-----------------------------------------------------------lS~G~~~r 88 (157)
T cd00267 68 LEELRRRIGYVPQ-----------------------------------------------------------LSGGQRQR 88 (157)
T ss_pred HHHHHhceEEEee-----------------------------------------------------------CCHHHHHH
Confidence 23456788888 99999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
++||++|+.+|++++|||||+|||..++..+.+.|+++.+.++|+|+++|+++. +..+||++++|++|+
T Consensus 89 ~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~-~~~~~d~i~~l~~g~ 157 (157)
T cd00267 89 VALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPEL-AELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEeCcC
Confidence 999999999999999999999999999999999999998778999999999985 777899999999875
No 358
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.6e-32 Score=266.46 Aligned_cols=188 Identities=31% Similarity=0.429 Sum_probs=164.5
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
++.+||+.+-+ +..++.++||++.+||++-|.||||||||||||+|+|+.. |.+|+|.++|.+++.
T Consensus 3 L~a~~L~~~R~------------e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~--p~~G~v~~~~~~i~~ 68 (209)
T COG4133 3 LEAENLSCERG------------ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR--PDAGEVYWQGEPIQN 68 (209)
T ss_pred chhhhhhhccC------------cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC--CCCCeEEecCCCCcc
Confidence 66778877632 3469999999999999999999999999999999999986 468999999998864
Q ss_pred cc--ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 128 SY--MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 128 ~~--~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
.. .++.+-|+-..+-+=+.+||.|||.|...+... ...+.+.+.++.+||....|.+++ .||-||||
T Consensus 69 ~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqR 137 (209)
T COG4133 69 VRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVG-----QLSAGQQR 137 (209)
T ss_pred chhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchh-----hcchhHHH
Confidence 31 345567888888888999999999999876532 123568899999999999999987 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccH
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
||+|||-+++.+++.|||||+++||......+-.++..-+.+|..||.+||||..
T Consensus 138 RvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 138 RVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 9999999999999999999999999999999999999999999999999999865
No 359
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.98 E-value=6e-32 Score=347.88 Aligned_cols=209 Identities=26% Similarity=0.434 Sum_probs=170.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++|++++|+.. .+.+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|
T Consensus 636 ~i~~~~~~~~~~~~----------~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~--~~~G~i~~~g---- 699 (1522)
T TIGR00957 636 SITVHNATFTWARD----------LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVHMKG---- 699 (1522)
T ss_pred cEEEEEeEEEcCCC----------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--cCCcEEEECC----
Confidence 59999999999632 2359999999999999999999999999999999999885 4689999987
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH---HHHHcCC-CccccccccCCCCCCCChH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYE---LLDQLGL-RSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~---~l~~lgL-~~~~~~~ig~~~~~~LSGG 202 (820)
.++||+|++.+++ .||+||+.|+.. .++++. +++.+ +.+.+++ ++..++.+|+. ...||||
T Consensus 700 ------~i~yv~Q~~~l~~-~Ti~eNI~~g~~------~~~~~~-~~~~~~~~l~~~l~~~~~g~~t~ig~~-g~~LSGG 764 (1522)
T TIGR00957 700 ------SVAYVPQQAWIQN-DSLRENILFGKA------LNEKYY-QQVLEACALLPDLEILPSGDRTEIGEK-GVNLSGG 764 (1522)
T ss_pred ------EEEEEcCCccccC-CcHHHHhhcCCc------cCHHHH-HHHHHHhCCHHHHHhcCCCCCceecCC-CCCCCHH
Confidence 3899999998876 599999998632 122222 22222 2233333 33456777754 4679999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA--RTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~--~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
||||++|||||+.+|++++||||||+||+.++..+++.+.+.. .+++|+|++||+++. + ..||+|++|++|++++.
T Consensus 765 QkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~-l-~~~D~ii~l~~G~i~~~ 842 (1522)
T TIGR00957 765 QKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY-L-PQVDVIIVMSGGKISEM 842 (1522)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh-h-hhCCEEEEecCCeEEee
Confidence 9999999999999999999999999999999999999997642 358999999999974 4 45999999999999999
Q ss_pred cCccchhh
Q 003437 281 GSPVALPA 288 (820)
Q Consensus 281 G~~~~~~~ 288 (820)
|+.+++..
T Consensus 843 g~~~~l~~ 850 (1522)
T TIGR00957 843 GSYQELLQ 850 (1522)
T ss_pred CCHHHHHh
Confidence 99888753
No 360
>PRK13409 putative ATPase RIL; Provisional
Probab=99.98 E-value=2.5e-32 Score=321.14 Aligned_cols=181 Identities=25% Similarity=0.413 Sum_probs=152.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEE-----------ECCEeCCCc-----cccceEEE
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVR-----------IDGKPVTTS-----YMKMVSSY 136 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~-----------i~G~~~~~~-----~~~~~~gy 136 (820)
.+|++++ .+++||+++|+||||||||||||+|+|++. +++|+|. ++|.++... ..+..+++
T Consensus 88 ~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~--p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~ 164 (590)
T PRK13409 88 FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI--PNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVH 164 (590)
T ss_pred eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceee
Confidence 4899999 999999999999999999999999999885 4579997 999887431 11123455
Q ss_pred EccCCCCCCC---CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHH
Q 003437 137 VMQDDQLFPM---LTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDI 213 (820)
Q Consensus 137 v~Q~~~l~~~---lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL 213 (820)
.+|.....|. .||+|++... +..++++++++.+||.+..|+.++ +|||||||||+||++|
T Consensus 165 ~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~ia~al 227 (590)
T PRK13409 165 KPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDIS-----ELSGGELQRVAIAAAL 227 (590)
T ss_pred cccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHH
Confidence 5554333332 2999998631 123578899999999988888876 6999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 214 IHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 214 ~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|+++. +..++|++++|+++
T Consensus 228 ~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~-l~~~~D~v~vl~~~ 287 (590)
T PRK13409 228 LRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAV-LDYLADNVHIAYGE 287 (590)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH-HHHhCCEEEEEeCC
Confidence 999999999999999999999999999999988 9999999999985 78899999999864
No 361
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=2.8e-31 Score=340.73 Aligned_cols=192 Identities=22% Similarity=0.391 Sum_probs=157.1
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
+.+|+|+|++|++||+++|+|||||||||||++|+|+.+ +.+|+|.++| .++||+|++.+++. ||+|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~--~~~G~i~~~g----------~iayv~Q~~~l~~~-Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE--PSEGKIKHSG----------RISFSPQTSWIMPG-TIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECC----------EEEEEeCCCccCCc-cHHH
Confidence 469999999999999999999999999999999999885 4689999988 38999999999986 9999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCC
Q 003437 152 TFMFAAEVRLPPSISRDEKKKR-----VYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPT 226 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPt 226 (820)
|+.|+... +.+..++. .++.++.+ .+..+|.+|+. ...|||||||||+|||||+.+|+++||||||
T Consensus 506 NI~~g~~~------~~~~~~~~~~~~~L~~~l~~l--~~g~~t~vg~~-g~~LSgGqkqRi~lARAl~~~~~illLDep~ 576 (1490)
T TIGR01271 506 NIIFGLSY------DEYRYTSVIKACQLEEDIALF--PEKDKTVLGEG-GITLSGGQRARISLARAVYKDADLYLLDSPF 576 (1490)
T ss_pred HHHhcccc------chHHHHHHHHHHhHHHHHHhc--cccccccccCc-CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 99987421 11111111 11222222 22345667754 4679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHH-HHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchhh
Q 003437 227 SGLDSTSAYSVVEK-VKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPA 288 (820)
Q Consensus 227 sgLD~~~~~~i~~~-L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 288 (820)
+|||+.++..+++. ++++. +|+|+|++||++.. + ..||+|++|++|+++..|+.+++..
T Consensus 577 saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~-~-~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 577 THLDVVTEKEIFESCLCKLM-SNKTRILVTSKLEH-L-KKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred ccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHH-H-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999985 66664 48999999999975 4 4599999999999999999887753
No 362
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=2.4e-31 Score=318.20 Aligned_cols=219 Identities=21% Similarity=0.238 Sum_probs=157.8
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCceEEEECCEe
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ-GSLEGSVRIDGKP 124 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~-~~~~G~I~i~G~~ 124 (820)
..|+++||+++|++ +.+|+|+||+|.+|+++||+||||||||||||+|+|+... .+.+|+|.+.++.
T Consensus 176 ~~I~i~nls~~y~~------------~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~ 243 (718)
T PLN03073 176 KDIHMENFSISVGG------------RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQE 243 (718)
T ss_pred eeEEEceEEEEeCC------------CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEecc
Confidence 45999999999953 2499999999999999999999999999999999996421 2456888765543
Q ss_pred CCCcc-----------------ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC---------------CCCHHHHHH
Q 003437 125 VTTSY-----------------MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPP---------------SISRDEKKK 172 (820)
Q Consensus 125 ~~~~~-----------------~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~---------------~~~~~~~~~ 172 (820)
+.... .++.++|++|++.+... ++.++.........+. ........+
T Consensus 244 ~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 322 (718)
T PLN03073 244 VVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEA 322 (718)
T ss_pred CCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHH
Confidence 21100 11224566665432211 1111110000000000 000112345
Q ss_pred HHHHHHHHcCCC-ccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEE
Q 003437 173 RVYELLDQLGLR-SATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIV 251 (820)
Q Consensus 173 ~v~~~l~~lgL~-~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tv 251 (820)
++.++|+.+||. +..++.++ .|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.||
T Consensus 323 r~~~~L~~lgl~~~~~~~~~~-----~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tv 394 (718)
T PLN03073 323 RAASILAGLSFTPEMQVKATK-----TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTF 394 (718)
T ss_pred HHHHHHHHCCCChHHHhCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEE
Confidence 677788888885 34556554 69999999999999999999999999999999999999999999887 6899
Q ss_pred EEEEcCccHHHHhhcCEEEEEeCCeEE-EEcCccch
Q 003437 252 LMTIHQPSYRIQMLLDRIIVLARGRLV-YMGSPVAL 286 (820)
Q Consensus 252 i~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~~ 286 (820)
|+++|+... +..+||++++|++|+++ +.|+.++.
T Consensus 395 iivsHd~~~-l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 395 IVVSHAREF-LNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred EEEECCHHH-HHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999875 78889999999999996 67765543
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=8.8e-31 Score=301.12 Aligned_cols=206 Identities=30% Similarity=0.422 Sum_probs=169.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+. +.+|+|+|+++.+|+.+||||+||||||||||+|+|... +++|+|...+
T Consensus 3 ~i~~~~ls~~~g~------------~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~--~~~G~i~~~~---- 64 (530)
T COG0488 3 MITLENLSLAYGD------------RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE--PDSGEVTRPK---- 64 (530)
T ss_pred eEEEeeeEEeeCC------------ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc--CCCCeEeecC----
Confidence 5999999999954 359999999999999999999999999999999999875 4679998753
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhc-------------CCCC--------------CCHHHHHHHHHHHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVR-------------LPPS--------------ISRDEKKKRVYELLD 179 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~-------------~~~~--------------~~~~~~~~~v~~~l~ 179 (820)
...++|++|++.+.+..||.+.+.-+..-. .+.. +..-+.+.++..++.
T Consensus 65 ----~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~ 140 (530)
T COG0488 65 ----GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALL 140 (530)
T ss_pred ----CceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHh
Confidence 135799999999999999999887653210 0000 000112357788899
Q ss_pred HcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCcc
Q 003437 180 QLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259 (820)
Q Consensus 180 ~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 259 (820)
.+|+.+. ++.++ .||||||.||+||++|+.+|++|||||||++||..+..-+-+.|++. .| |+|+||||-.
T Consensus 141 gLg~~~~-~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR~ 211 (530)
T COG0488 141 GLGFPDE-DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDRY 211 (530)
T ss_pred cCCCCcc-cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCHH
Confidence 9999877 77776 59999999999999999999999999999999999999999999854 46 9999999987
Q ss_pred HHHHhhcCEEEEEeCCeEE-EEcCcc
Q 003437 260 YRIQMLLDRIIVLARGRLV-YMGSPV 284 (820)
Q Consensus 260 ~~i~~~~D~v~lL~~G~iv-~~G~~~ 284 (820)
+ +...|++|+-|+.|++. |.|.-+
T Consensus 212 F-Ld~V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 212 F-LDNVATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred H-HHHHhhheEEecCCceeEecCCHH
Confidence 5 88999999999999775 455443
No 364
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1.1e-30 Score=320.85 Aligned_cols=218 Identities=28% Similarity=0.390 Sum_probs=183.5
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...|+++|++.+|..+. ..+|+|||++|+|||.+||+|+.|||||||+++|-++.. +.+|+|.|||.+
T Consensus 1136 ~G~I~f~~~~~RYrp~l----------p~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G~I~IDgvd 1203 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNL----------PLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEGEILIDGVD 1203 (1381)
T ss_pred CCeEEEEEeEEEeCCCC----------cchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCCeEEEcCee
Confidence 45699999999996532 359999999999999999999999999999999999885 368999999999
Q ss_pred CCC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCC
Q 003437 125 VTT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYIGNE 194 (820)
Q Consensus 125 ~~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~ 194 (820)
+.. .+.|++++.+||||.+|.. |||.||.-..+ .+++ .+-++|+..+| +..+|..+.+
T Consensus 1204 I~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~e------~sD~----~IW~ALe~~~Lk~~v~~~p~~Ld~~v~e- 1271 (1381)
T KOG0054|consen 1204 ISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFDE------YSDD----EIWEALERCQLKDVVSSLPGGLDSEVSE- 1271 (1381)
T ss_pred cccccHHHHHhcCeeeCCCCceecC-ccccccCcccc------cCHH----HHHHHHHHhChHHHHhhCCcCCCceecC-
Confidence 976 3578889999999999998 99999964322 2333 34444444433 3446677753
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
+...+|-||||.+++||||+++.+||+|||.|++.|+.+-..|.+.||+-= ++.|||.+.|..+. +.+ +|||+||++
T Consensus 1272 gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T-Vmd-~DrVlVld~ 1348 (1381)
T KOG0054|consen 1272 GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT-VMD-SDRVLVLDA 1348 (1381)
T ss_pred CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch-hhh-cCeEEEeeC
Confidence 456899999999999999999999999999999999999999999999853 37999999999986 544 899999999
Q ss_pred CeEEEEcCccchhhh
Q 003437 275 GRLVYMGSPVALPAH 289 (820)
Q Consensus 275 G~iv~~G~~~~~~~~ 289 (820)
|+++++|+|.++++.
T Consensus 1349 G~v~EfdsP~~Ll~~ 1363 (1381)
T KOG0054|consen 1349 GRVVEFDSPAELLSD 1363 (1381)
T ss_pred CeEeecCChHHHHhC
Confidence 999999999998754
No 365
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.5e-29 Score=264.51 Aligned_cols=190 Identities=25% Similarity=0.361 Sum_probs=135.5
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHH-HHHHcCCCCCCCceEEEECC-------Ee---CC-Cc--ccc-ceEEE
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFL-DALAGRIAQGSLEGSVRIDG-------KP---VT-TS--YMK-MVSSY 136 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl-~~L~G~~~~~~~~G~I~i~G-------~~---~~-~~--~~~-~~~gy 136 (820)
..+|+||||++++||+++|+||||||||||+ ..|.. .|++.+.+ .. +. +. ..+ ....+
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAI 80 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-------HHHHHHhhcccchhhhhhcccCccccccccCCCceE
Confidence 4699999999999999999999999999996 44431 12221100 00 00 00 011 12234
Q ss_pred EccCC-C-CCCCCCHH---HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChHHHHHHHHH
Q 003437 137 VMQDD-Q-LFPMLTVF---ETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGRRGVSGGERRRVSIG 210 (820)
Q Consensus 137 v~Q~~-~-l~~~lTV~---e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSGGerqRv~ia 210 (820)
..|++ . +.|..+|. +...+...+. ......++ .++++.+||.+ ..+..+ ..|||||||||+||
T Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la 149 (226)
T cd03270 81 AIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRSA-----PTLSGGEAQRIRLA 149 (226)
T ss_pred EecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCcc-----CcCCHHHHHHHHHH
Confidence 44433 2 34445654 2222222111 11122233 56899999976 356555 47999999999999
Q ss_pred HHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE------eCCeEEEEc
Q 003437 211 IDIIHKP--SLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL------ARGRLVYMG 281 (820)
Q Consensus 211 ~aL~~~P--~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G 281 (820)
++|+.+| ++|||||||+|||+.++..+.+.|++++++|.|||++||+++. + .+||++++| ++|+|+++|
T Consensus 150 ral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~-~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 150 TQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDT-I-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHH-H-HhCCEEEEeCCCccccCCEEEecC
Confidence 9999998 5999999999999999999999999998789999999999974 5 589999999 999999876
No 366
>PTZ00243 ABC transporter; Provisional
Probab=99.97 E-value=4.8e-30 Score=329.68 Aligned_cols=193 Identities=28% Similarity=0.400 Sum_probs=152.4
Q ss_pred cccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHH
Q 003437 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVF 150 (820)
Q Consensus 71 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~ 150 (820)
++.+|+|+|++|++||+++|+|||||||||||++|+|++. +++|+|.++ +.++||+|++.+++ .||+
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~--~~~G~i~~~----------~~i~yv~Q~~~l~~-~Tv~ 738 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE--ISEGRVWAE----------RSIAYVPQQAWIMN-ATVR 738 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEEC----------CeEEEEeCCCccCC-CcHH
Confidence 3569999999999999999999999999999999999885 467999763 45899999998875 5999
Q ss_pred HHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCC
Q 003437 151 ETFMFAAEVRLPPSISRDEKK-----KRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEP 225 (820)
Q Consensus 151 e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEP 225 (820)
||+.|+... ..+... ..+++.++.+ .+..++.+|+ ....|||||||||+|||||+.+|+++|||||
T Consensus 739 enI~~~~~~------~~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP 809 (1560)
T PTZ00243 739 GNILFFDEE------DAARLADAVRVSQLEADLAQL--GGGLETEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDP 809 (1560)
T ss_pred HHHHcCChh------hHHHHHHHHHHhhhHHHHHHh--hccchHHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 999985321 111111 1223334444 1122344543 3457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchh
Q 003437 226 TSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 226 tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 287 (820)
|++||+.++..+++.+.....+|+|+|++||+++. + ..||+|++|++|++++.|+.+++.
T Consensus 810 ~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~-~-~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 810 LSALDAHVGERVVEECFLGALAGKTRVLATHQVHV-V-PRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred cccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999987543222358999999999974 4 579999999999999999988764
No 367
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1.6e-29 Score=310.69 Aligned_cols=208 Identities=29% Similarity=0.470 Sum_probs=176.0
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...++++|.+++.+.. ...+.|+|||++|++|+++||+||-|||||+||.+|.|.++ ..+|+|.++|.
T Consensus 516 ~~~i~i~~~sfsW~~~---------~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs- 583 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSE---------SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS- 583 (1381)
T ss_pred CceEEEeeeeEecCCC---------CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe-
Confidence 3459999999997542 12348999999999999999999999999999999999874 57899999885
Q ss_pred CCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCCC
Q 003437 125 VTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-------SATHTYIGNEGRR 197 (820)
Q Consensus 125 ~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~~ 197 (820)
++||+|.+.++.. ||+|||.|+... + +++.+++++...|+ ..-.|.||+++.
T Consensus 584 ---------iaYv~Q~pWI~ng-TvreNILFG~~~------d----~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi- 642 (1381)
T KOG0054|consen 584 ---------VAYVPQQPWIQNG-TVRENILFGSPY------D----EERYDKVIKACALKKDLEILPFGDLTEIGERGI- 642 (1381)
T ss_pred ---------EEEeccccHhhCC-cHHHhhhcCccc------c----HHHHHHHHHHccCHhHHhhcCCCCcceecCCcc-
Confidence 7999999999986 999999998542 2 34455555555444 345677887665
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.||||||||+++|||+-++++|++||.|.|++|......+++..-+..-+++|+|++|||.+ ....+|.|++|++|+|
T Consensus 643 nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~--~L~~ad~Iivl~~G~I 720 (1381)
T KOG0054|consen 643 NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQ--FLPHADQIIVLKDGKI 720 (1381)
T ss_pred CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchh--hhhhCCEEEEecCCeE
Confidence 69999999999999999999999999999999999999999876654456899999999976 4567999999999999
Q ss_pred EEEcCccchh
Q 003437 278 VYMGSPVALP 287 (820)
Q Consensus 278 v~~G~~~~~~ 287 (820)
+..|+.+|+.
T Consensus 721 ~~~Gty~el~ 730 (1381)
T KOG0054|consen 721 VESGTYEELL 730 (1381)
T ss_pred ecccCHHHHH
Confidence 9999999887
No 368
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=8.9e-30 Score=243.74 Aligned_cols=213 Identities=26% Similarity=0.393 Sum_probs=175.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCE--e
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK--P 124 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~--~ 124 (820)
.|.++||+|+|.-.+. +| -..++|+++||+++.||++++=||||+|||||||+|-|-+. +++|+|++.-. -
T Consensus 4 ~l~v~~~~KtFtlH~q-~G----i~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~--~d~G~I~v~H~g~~ 76 (235)
T COG4778 4 PLNVSNVSKTFTLHQQ-GG----VRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL--PDEGQILVRHEGEW 76 (235)
T ss_pred eeeeecchhheEeeec-CC----EEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC--CCCceEEEEeCcch
Confidence 4899999998854321 11 23469999999999999999999999999999999999764 57899998633 2
Q ss_pred CC-----C----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 003437 125 VT-----T----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEG 195 (820)
Q Consensus 125 ~~-----~----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~ 195 (820)
++ + .-.++.+|||.|--...|..+..|-++-.+.-+ +++++..++++.++|.+|++.+.+-.+.
T Consensus 77 vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~La---- 149 (235)
T COG4778 77 VDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWSLA---- 149 (235)
T ss_pred hhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhcCC----
Confidence 22 1 113456899999888888888778777665443 5778888899999999999987654443
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
|.+.||||+|||.|||.++.+-+||+|||||+.||..++.-++++|++-+.+|..+|=+-||-+- -...+||++-+..
T Consensus 150 PaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeev-re~vadR~~~~~~ 227 (235)
T COG4778 150 PATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEV-REAVADRLLDVSA 227 (235)
T ss_pred CcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHH-HHHHhhheeeccc
Confidence 46899999999999999999999999999999999999999999999988899999999999653 4568999988754
No 369
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=5.7e-29 Score=263.78 Aligned_cols=195 Identities=26% Similarity=0.386 Sum_probs=153.0
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH-----cCCC-----CC---------CCceEEEECCEeCCCcc----
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALA-----GRIA-----QG---------SLEGSVRIDGKPVTTSY---- 129 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~-----G~~~-----~~---------~~~G~I~i~G~~~~~~~---- 129 (820)
.-|+||+..|+.|++++|.|+||||||||++.+. ..+. +. ...--|.+|..++....
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 3699999999999999999999999999998552 1110 10 11124777777764311
Q ss_pred ---------ccc----------------eEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 003437 130 ---------MKM----------------VSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR 184 (820)
Q Consensus 130 ---------~~~----------------~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 184 (820)
.|+ .+.|..++...+..+||.|++.|...++ ..+++.++|+.+||.
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL~ 159 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGLG 159 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCCc
Confidence 000 0234555555567899999999886542 124677899999998
Q ss_pred c-cccccccCCCCCCCChHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccH
Q 003437 185 S-ATHTYIGNEGRRGVSGGERRRVSIGIDIIHK---PSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 185 ~-~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~---P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
+ ..+..+ ..||||||||++||++|+.+ |+++||||||+|||+.....+.+.|+++.++|.|||+++|+++.
T Consensus 160 ~l~l~~~~-----~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~ 234 (261)
T cd03271 160 YIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDV 234 (261)
T ss_pred hhhhcCcc-----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 7 355554 47999999999999999996 79999999999999999999999999999889999999999974
Q ss_pred HHHhhcCEEEEE------eCCeEEEEcCc
Q 003437 261 RIQMLLDRIIVL------ARGRLVYMGSP 283 (820)
Q Consensus 261 ~i~~~~D~v~lL------~~G~iv~~G~~ 283 (820)
+ +.||+++.| ++|++++.|++
T Consensus 235 -i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 235 -I-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred -H-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 4 579999999 79999999974
No 370
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.96 E-value=1.6e-29 Score=242.86 Aligned_cols=134 Identities=43% Similarity=0.707 Sum_probs=119.2
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC---ccccceEEEEccCCCCCCCCCHHH
Q 003437 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT---SYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 75 L~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
|+|||+++++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP--PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH--ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 789999999999999999999999999999999875 368999999999976 345677999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTS 227 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPts 227 (820)
| ...++++++++.+++.+..++.++... ..|||||||||+||++|+.+|++|||||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQRA-SSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTSCG-GGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------ccccccccccccccccccccccccccc-chhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 8 234568899999999988888875433 6899999999999999999999999999996
No 371
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=5.7e-28 Score=277.93 Aligned_cols=203 Identities=32% Similarity=0.469 Sum_probs=167.2
Q ss_pred CCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCE
Q 003437 44 PGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK 123 (820)
Q Consensus 44 ~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~ 123 (820)
....++++|+++.|.++ +.+++++||.|.+|+.+||+||||+|||||||+|+|... +.+|+|.+.-
T Consensus 318 g~~vl~~~~~~~~y~~~-----------~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~--~~~G~v~~g~- 383 (530)
T COG0488 318 GKLVLEFENVSKGYDGG-----------RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG--PLSGTVKVGE- 383 (530)
T ss_pred CCeeEEEeccccccCCC-----------ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc--cCCceEEeCC-
Confidence 45569999999999642 469999999999999999999999999999999999774 4589998742
Q ss_pred eCCCccccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCh
Q 003437 124 PVTTSYMKMVSSYVMQDD-QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEGRRGVSG 201 (820)
Q Consensus 124 ~~~~~~~~~~~gyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSG 201 (820)
.-.+||..|+. .+.+..|+.|++.-... ...+..+...|..+++... ..+.++ .|||
T Consensus 384 -------~v~igyf~Q~~~~l~~~~t~~d~l~~~~~---------~~~e~~~r~~L~~f~F~~~~~~~~v~-----~LSG 442 (530)
T COG0488 384 -------TVKIGYFDQHRDELDPDKTVLEELSEGFP---------DGDEQEVRAYLGRFGFTGEDQEKPVG-----VLSG 442 (530)
T ss_pred -------ceEEEEEEehhhhcCccCcHHHHHHhhCc---------cccHHHHHHHHHHcCCChHHHhCchh-----hcCH
Confidence 23479999986 45578899998864321 1115678899999999743 456665 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE-
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM- 280 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~- 280 (820)
|||.||.+|+.++.+|.+|||||||+.||..+...+.+.|.+. ..|||++|||... +..+|++++.+.+ ++..+
T Consensus 443 GEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~F-l~~va~~i~~~~~-~~~~~~ 517 (530)
T COG0488 443 GEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRYF-LDRVATRIWLVED-KVEEFE 517 (530)
T ss_pred hHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHHH-HHhhcceEEEEcC-ceeEcC
Confidence 9999999999999999999999999999999999999998876 5699999999986 8999999999998 55444
Q ss_pred cCccch
Q 003437 281 GSPVAL 286 (820)
Q Consensus 281 G~~~~~ 286 (820)
|..++.
T Consensus 518 g~y~~y 523 (530)
T COG0488 518 GGYEDY 523 (530)
T ss_pred CCHHHH
Confidence 554433
No 372
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=2.6e-29 Score=241.45 Aligned_cols=208 Identities=25% Similarity=0.409 Sum_probs=176.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.++++||+.+- -|-.+|+++..||++-++|||||||||||-.++|+++ -+|+|.++|.++.
T Consensus 3 l~qln~v~~~t----------------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~---~sGsi~~~G~~l~ 63 (248)
T COG4138 3 LMQLNDVAEST----------------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GSGSIQFAGQPLE 63 (248)
T ss_pred eeeeccccccc----------------cccccccccccceEEEEECCCCccHHHHHHHHhCCCC---CCceEEECCcchh
Confidence 36777776542 4778999999999999999999999999999999873 4799999999986
Q ss_pred Cc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 127 TS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
.. ...+..+|+.|+..-...|.|..+|.+. .+.++....++++...++|++...+.+. +|||||
T Consensus 64 ~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~--------qP~~~~a~~i~~i~~~L~l~DKL~Rs~~-----qLSGGE 130 (248)
T COG4138 64 AWSATELARHRAYLSQQQTPPFAMPVWHYLTLH--------QPDKTRTELLNDVAGALALDDKLGRSTN-----QLSGGE 130 (248)
T ss_pred HHhHhHHHHHHHHHhhccCCcchhhhhhhhhhc--------CchHHHHHHHHHHHhhhcccchhhhhhh-----hcCccc
Confidence 42 2345568998876655567888887653 2446677788999999999988777664 799999
Q ss_pred HHHHHHHHHHhc-----CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 204 RRRVSIGIDIIH-----KP--SLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 204 rqRv~ia~aL~~-----~P--~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
-|||-+|-..+. || ++|+||||.++||......+-.+|.+++..|.+||++.||... ..+.+|++++|++|+
T Consensus 131 WQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh-TLrhA~~~wLL~rG~ 209 (248)
T COG4138 131 WQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH-TLRHAHRAWLLKRGK 209 (248)
T ss_pred ceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhh-HHHHHHHHHHHhcCe
Confidence 999999987764 44 6999999999999999999999999999999999999999986 567899999999999
Q ss_pred EEEEcCccchh
Q 003437 277 LVYMGSPVALP 287 (820)
Q Consensus 277 iv~~G~~~~~~ 287 (820)
++..|..++++
T Consensus 210 l~~~G~~~eVl 220 (248)
T COG4138 210 LLASGRREEVL 220 (248)
T ss_pred EEeecchhhhc
Confidence 99999998886
No 373
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.95 E-value=2.9e-28 Score=249.37 Aligned_cols=166 Identities=17% Similarity=0.262 Sum_probs=133.0
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-------CCceEEEECCEeCCCccccceEEEEccCCCCCCCCC
Q 003437 76 HDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG-------SLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLT 148 (820)
Q Consensus 76 ~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~-------~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lT 148 (820)
+++++++.+| +++|+||||||||||+++|+|++.+. ...|++.++|++......++.++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 7789999999 99999999999999999999986322 23467888888765433456789999998765
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHh----cCCCEEEEeC
Q 003437 149 VFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDII----HKPSLLFLDE 224 (820)
Q Consensus 149 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~----~~P~lLllDE 224 (820)
|.. . ..++++++++. .+..++.+ ..||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~~--~---------~~~~~~~~l~~---~~~~~~~~-----~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI--I---------SQGDVSEIIEA---PGKKVQRL-----SLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE--E---------ehhhHHHHHhC---CCccccch-----hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 110 0 12356677776 34445554 469999999999999997 4679999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 225 PTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 225 PtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
||+|||+..+..+.+.|+++++ +.|||++||++.. + +.||+++.+..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~~-~-~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKGT-M-EAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHH-H-hhcceEEEEEe
Confidence 9999999999999999999965 6899999999874 4 68999999875
No 374
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.95 E-value=3.7e-27 Score=264.99 Aligned_cols=217 Identities=29% Similarity=0.431 Sum_probs=181.9
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...++++|++.. ..++|+||++++||+++|-|-=|||+|-|+++|.|..+ ..+|+|.+||++
T Consensus 261 ~~~l~v~~l~~~----------------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~ 322 (500)
T COG1129 261 EPVLEVRNLSGG----------------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKP 322 (500)
T ss_pred CcEEEEecCCCC----------------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEE
Confidence 345888888743 15899999999999999999999999999999999653 458999999998
Q ss_pred CCCc----cccceEEEEccCC---CCCCCCCHHHHHHHHHHhcCC-C-CCCHHHHHHHHHHHHHHcCCCc-cccccccCC
Q 003437 125 VTTS----YMKMVSSYVMQDD---QLFPMLTVFETFMFAAEVRLP-P-SISRDEKKKRVYELLDQLGLRS-ATHTYIGNE 194 (820)
Q Consensus 125 ~~~~----~~~~~~gyv~Q~~---~l~~~lTV~e~l~~~~~~~~~-~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~ 194 (820)
+... ..+..++|||.|- -++..++|++|+.++...+.. . -+++...++.+++..+.+++.. ..+..++
T Consensus 323 v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~-- 400 (500)
T COG1129 323 VRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIG-- 400 (500)
T ss_pred ccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhh--
Confidence 8643 2445689999874 588899999999988322211 1 2556666778999999999853 3445554
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
.||||.+|||.||+.|..+|++|||||||.|.|.-++.+|.++|++++++|++||++|.+.. |+..+||||++|++
T Consensus 401 ---~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~ 476 (500)
T COG1129 401 ---TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMRE 476 (500)
T ss_pred ---cCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEEC
Confidence 69999999999999999999999999999999999999999999999999999999999987 58899999999999
Q ss_pred CeEEEEcCccc
Q 003437 275 GRLVYMGSPVA 285 (820)
Q Consensus 275 G~iv~~G~~~~ 285 (820)
|+++..=+.++
T Consensus 477 Gri~~e~~~~~ 487 (500)
T COG1129 477 GRIVGELDREE 487 (500)
T ss_pred CEEEEEecccc
Confidence 99997554443
No 375
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.93 E-value=4.6e-25 Score=278.05 Aligned_cols=138 Identities=22% Similarity=0.349 Sum_probs=114.7
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHh---cCCC
Q 003437 143 LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEGRRGVSGGERRRVSIGIDII---HKPS 218 (820)
Q Consensus 143 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSGGerqRv~ia~aL~---~~P~ 218 (820)
.+...||.|+|.+...-........++..+++ ++|+.+||.+. .+..+. +|||||||||+||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~-----tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLS-----SLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccc-----cCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45678999999887652211112334455666 58899999875 566654 69999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe------CCeEEEEcCccchhh
Q 003437 219 LLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA------RGRLVYMGSPVALPA 288 (820)
Q Consensus 219 lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~------~G~iv~~G~~~~~~~ 288 (820)
+|||||||+|||+.+...++++|++++++|.|||+++|+++. + ..+|++++|. +|+++..|+++++..
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~-i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHV-V-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 999999999999999999999999999889999999999974 5 7899999996 789999999988754
No 376
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=6.4e-26 Score=239.47 Aligned_cols=186 Identities=15% Similarity=0.239 Sum_probs=130.0
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC--------------CCCce--------EEEECCEe----C
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ--------------GSLEG--------SVRIDGKP----V 125 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~--------------~~~~G--------~I~i~G~~----~ 125 (820)
+.++++++ |++++|+||||||||||+++|++++.. .+.+| +|.+++.+ +
T Consensus 15 ~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~ 89 (243)
T cd03272 15 QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPI 89 (243)
T ss_pred CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCC
Confidence 34778876 789999999999999999999844210 01234 55665532 1
Q ss_pred C--CccccceEEEEccCCCCCC-CCCHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 126 T--TSYMKMVSSYVMQDDQLFP-MLTVFETFMFAAEVRLPPSISR-DEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 126 ~--~~~~~~~~gyv~Q~~~l~~-~lTV~e~l~~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
. ....++.++|++|+..+++ ..|..|...+...+........ .....++ .+.+++.+..+..+ +.|||
T Consensus 90 ~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i---~~l~~l~~~~~~~~-----~~lS~ 161 (243)
T cd03272 90 DKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKI---NSLTNMKQDEQQEM-----QQLSG 161 (243)
T ss_pred CCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCch---HHhhhccccccccc-----cccCH
Confidence 1 1234566899999887776 4577776665554322110000 0001223 33344544444444 47999
Q ss_pred HHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 202 GERRRVSIGIDIIH----KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 202 GerqRv~ia~aL~~----~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
|||||++||++|+. +|+++|+||||+|||+.++..+++.|+++++ +.+||+++|+++ +.++||++++|.
T Consensus 162 G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~--~~~~~d~i~~l~ 234 (243)
T cd03272 162 GQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRPE--LLEVADKFYGVK 234 (243)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHhhCCEEEEEE
Confidence 99999999999973 5899999999999999999999999999865 788888888864 678999999986
No 377
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=2.6e-27 Score=245.06 Aligned_cols=177 Identities=19% Similarity=0.231 Sum_probs=133.6
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
+.+|+++++ ++++|+||||||||||+++|.-. +|.+... ..++.++|++|+..+++.+|+.|
T Consensus 17 ~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~------------~G~~~~~-~~~~~i~~~~~~~~~~~~~~~~~ 78 (212)
T cd03274 17 EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV------------FGFRASK-MRQKKLSDLIHNSAGHPNLDSCS 78 (212)
T ss_pred CeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH------------hccCHHH-hhhhhHHHHhcCCCCCCCCceEE
Confidence 358888887 89999999999999999999732 2322211 11245789999988888899988
Q ss_pred HHHHHHHhcC-----CCCCCHHHHHH--HHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhc----CCCEE
Q 003437 152 TFMFAAEVRL-----PPSISRDEKKK--RVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIH----KPSLL 220 (820)
Q Consensus 152 ~l~~~~~~~~-----~~~~~~~~~~~--~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~----~P~lL 220 (820)
++.+...... ..+...+.... ...++++.++|.+..++.++ .||+|||||++||++++. +|+++
T Consensus 79 ~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~-----~lS~G~~~r~~la~al~~~~~~~p~il 153 (212)
T cd03274 79 VEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS-----NLSGGEKTLSSLALVFALHHYKPTPLY 153 (212)
T ss_pred EEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh-----hcCHHHHHHHHHHHHHHhcccCCCCEE
Confidence 8776653210 00111111111 12566778888877777664 699999999999999974 57999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 221 FLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 221 llDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
++||||+|||+.+...+.+.|+++++ +.|+|+++|++ ++.++||++++|..
T Consensus 154 ilDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 154 VMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 99999999999999999999999864 67888889996 46789999999974
No 378
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.93 E-value=2.1e-25 Score=231.15 Aligned_cols=193 Identities=23% Similarity=0.249 Sum_probs=133.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEe-CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECC--E
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAI-RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDG--K 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~-~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G--~ 123 (820)
.|+++|+. +|.+. ++++|... +|++++|+|||||||||||++|++.+. +...+....+. .
T Consensus 5 ~i~l~nf~-~y~~~---------------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~-g~~~~~~~~~~~~~ 67 (213)
T cd03279 5 KLELKNFG-PFREE---------------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALY-GKTPRYGRQENLRS 67 (213)
T ss_pred EEEEECCc-CcCCc---------------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEe-cCccccccchhHHH
Confidence 47777776 54321 44555543 589999999999999999999996542 22233333321 1
Q ss_pred eCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 124 PVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 124 ~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
.+.....+..+++++|++.... ++.... +++.++..+.+ .++..++.+..+..+ ..|||||
T Consensus 68 ~~~~~~~~~~v~~~f~~~~~~~--~~~r~~----------gl~~~~~~~~~--~l~~g~l~~~l~~~~-----~~lS~G~ 128 (213)
T cd03279 68 VFAPGEDTAEVSFTFQLGGKKY--RVERSR----------GLDYDQFTRIV--LLPQGEFDRFLARPV-----STLSGGE 128 (213)
T ss_pred HhcCCCccEEEEEEEEECCeEE--EEEEec----------CCCHHHHHHhh--hhhhcchHHHhcCCc-----cccCHHH
Confidence 1112223455789998763211 111111 23333222211 234444555555544 4699999
Q ss_pred HHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 204 RRRVSIGIDIIH----------KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 204 rqRv~ia~aL~~----------~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
|||++||++|+. +|++|||||||++||+.+...+.+.|++++++|.|||++||+++. +...+|++++|+
T Consensus 129 ~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~-~~~~~~~i~~~~ 207 (213)
T cd03279 129 TFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEEL-KERIPQRLEVIK 207 (213)
T ss_pred HHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHH-HHhhCcEEEEEe
Confidence 999999999985 578999999999999999999999999998779999999999974 778899999999
Q ss_pred CCe
Q 003437 274 RGR 276 (820)
Q Consensus 274 ~G~ 276 (820)
+|.
T Consensus 208 ~~~ 210 (213)
T cd03279 208 TPG 210 (213)
T ss_pred cCC
Confidence 874
No 379
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=4.1e-26 Score=225.05 Aligned_cols=231 Identities=23% Similarity=0.307 Sum_probs=180.1
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceEEEECCEe
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG--SLEGSVRIDGKP 124 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~--~~~G~I~i~G~~ 124 (820)
.|.++||+..+...+ +..+++++||+++.+||+-+++|.||||||-..|+|+|..+.. .+.-...+++.+
T Consensus 3 LLDIrnL~IE~~Tsq--------G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~id 74 (330)
T COG4170 3 LLDIRNLTIEFKTSQ--------GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDID 74 (330)
T ss_pred cccccceEEEEecCC--------CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccch
Confidence 378889999886543 2356999999999999999999999999999999999986421 123445566666
Q ss_pred CC---Cccccc----eEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCC---CHHHHHHHHHHHHHHcCCCcccccccc
Q 003437 125 VT---TSYMKM----VSSYVMQDDQ--LFPMLTVFETFMFAAEVRLPPSI---SRDEKKKRVYELLDQLGLRSATHTYIG 192 (820)
Q Consensus 125 ~~---~~~~~~----~~gyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~~~ig 192 (820)
+- +...|+ .++++||++. |-|.-+|...|.-........+. .-.-++.++-++|.++|+.+..| +.
T Consensus 75 LL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkD--IM 152 (330)
T COG4170 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--IM 152 (330)
T ss_pred hhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHH--HH
Confidence 43 222333 3568999985 56665665444322111000000 01124567889999999987666 44
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEE
Q 003437 193 NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIV 271 (820)
Q Consensus 193 ~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~l 271 (820)
..+|.+|.-||-|+|.||.|++.+|++||.||||+.+|+.++.+|+++|.++.+ +|.||++++||... +.+.||++-|
T Consensus 153 ~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~-is~W~d~i~V 231 (330)
T COG4170 153 RSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQM-ISQWADKINV 231 (330)
T ss_pred HhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHH-HHHHhhheEE
Confidence 578889999999999999999999999999999999999999999999999986 69999999999985 8899999999
Q ss_pred EeCCeEEEEcCccchhh
Q 003437 272 LARGRLVYMGSPVALPA 288 (820)
Q Consensus 272 L~~G~iv~~G~~~~~~~ 288 (820)
|.-|+-++.++.+++++
T Consensus 232 lYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 232 LYCGQTVESAPSEELVT 248 (330)
T ss_pred EEecccccccchhHHhc
Confidence 99999999999988865
No 380
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.92 E-value=8.6e-26 Score=239.93 Aligned_cols=184 Identities=19% Similarity=0.262 Sum_probs=135.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCE-eCCC-----ccccceEEEEccCC---------CCCCCCCH
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK-PVTT-----SYMKMVSSYVMQDD---------QLFPMLTV 149 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~-~~~~-----~~~~~~~gyv~Q~~---------~l~~~lTV 149 (820)
..+++|+||||||||||+++|++++.+. ..|++.+.|. ++-. ......+++++|++ .+.|.+||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~-~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT-NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc-ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 4599999999999999999999987432 2468888776 3211 11234678999985 34567899
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccc---------------cccCCCCCCCChHHHHHHHHHHHHh
Q 003437 150 FETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHT---------------YIGNEGRRGVSGGERRRVSIGIDII 214 (820)
Q Consensus 150 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------------~ig~~~~~~LSGGerqRv~ia~aL~ 214 (820)
.+++.+....+.... .++...+++.++|+.+||...... ..-+..+..||||||||++||++|+
T Consensus 104 ~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~ 182 (251)
T cd03273 104 TRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILA 182 (251)
T ss_pred EEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHH
Confidence 988865432211000 122344788999999999611000 0112234579999999999999998
Q ss_pred ----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 215 ----HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 215 ----~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
.+|+++++||||++||+..+..+.+.|+++. +|.++|++||++ ++.+.||+++-+.
T Consensus 183 ~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 183 LLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 5789999999999999999999999999985 489999999995 4677899998875
No 381
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.92 E-value=3.7e-25 Score=227.74 Aligned_cols=165 Identities=21% Similarity=0.289 Sum_probs=124.8
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHH----cCCCCCCCceEEEECCEeCCCccccceEEEEccCC-----CCCCCCC
Q 003437 78 ISGQAIRGEIMAIMGPSGAGKSTFLDALA----GRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDD-----QLFPMLT 148 (820)
Q Consensus 78 vs~~i~~Ge~~allGpnGsGKSTLl~~L~----G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~-----~l~~~lT 148 (820)
.++++.+| +++|+|||||||||||++|. |...+ ..|.+..+...+.....+..+++++|++ .....+|
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~--~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPP--NSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCc--ccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 34567778 99999999999999999995 76543 3455542222233333455688999987 3445568
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH------HHHHHHHhcCCCEEEE
Q 003437 149 VFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR------VSIGIDIIHKPSLLFL 222 (820)
Q Consensus 149 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR------v~ia~aL~~~P~lLll 222 (820)
|.|++.+.. . +.+++.+ +.. ++.||+||+|| ++||++++.+|+++++
T Consensus 93 ~~~~~~~~~---------~----~~~~~~~---------~~~-----~~~LS~G~~~~~~la~rlala~al~~~p~illl 145 (204)
T cd03240 93 ILENVIFCH---------Q----GESNWPL---------LDM-----RGRCSGGEKVLASLIIRLALAETFGSNCGILAL 145 (204)
T ss_pred Hhhceeeec---------h----HHHHHHH---------hcC-----ccccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 888886531 1 1223333 223 34799999996 7899999999999999
Q ss_pred eCCCCCCCHHHHH-HHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 223 DEPTSGLDSTSAY-SVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 223 DEPtsgLD~~~~~-~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
||||++||+..+. .+.+.|++++++ |.+||++||++.. ...||+++.|.+
T Consensus 146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~--~~~~d~i~~l~~ 197 (204)
T cd03240 146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEEL--VDAADHIYRVEK 197 (204)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHH--HhhCCEEEEEee
Confidence 9999999999999 999999999876 8999999999864 457999999965
No 382
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.92 E-value=5e-24 Score=235.09 Aligned_cols=223 Identities=26% Similarity=0.405 Sum_probs=187.5
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...|+++||+..-.. +...++||||+++.||+++|.|-.|-|-+.|+.+|+|+.++ .+|+|.++|++
T Consensus 255 ~~vL~V~~L~v~~~~-----------~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~--~~G~I~l~G~~ 321 (501)
T COG3845 255 EVVLEVEDLSVKDRR-----------GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP--ASGRILLNGKD 321 (501)
T ss_pred CeEEEEeeeEeecCC-----------CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCcc--CCceEEECCEe
Confidence 456999999986422 23579999999999999999999999999999999998753 35999999999
Q ss_pred C-C---Cc-cccceEEEEccCC---CCCCCCCHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHHHHcCCCcc-ccccc
Q 003437 125 V-T---TS-YMKMVSSYVMQDD---QLFPMLTVFETFMFAAEVRL----PPSISRDEKKKRVYELLDQLGLRSA-THTYI 191 (820)
Q Consensus 125 ~-~---~~-~~~~~~gyv~Q~~---~l~~~lTV~e~l~~~~~~~~----~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~i 191 (820)
+ . .. ..+..++|||+|. -+.+.+|+.||+.+...-+. ..-+...+..+.+.++++.+++... .+..+
T Consensus 322 v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a 401 (501)
T COG3845 322 VLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPA 401 (501)
T ss_pred ccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcch
Confidence 7 2 22 2234579999986 47888999999988754321 1125667788899999999998632 23333
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEE
Q 003437 192 GNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIV 271 (820)
Q Consensus 192 g~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 271 (820)
+.||||++||+-+||+|..+|++|++.+||.|||..+...|.+.|.++++.|+.|++++-+.+ +++.+||||.+
T Consensus 402 -----~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaV 475 (501)
T COG3845 402 -----RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAV 475 (501)
T ss_pred -----hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeee
Confidence 579999999999999999999999999999999999999999999999999999999999998 59999999999
Q ss_pred EeCCeEEEEcCccch
Q 003437 272 LARGRLVYMGSPVAL 286 (820)
Q Consensus 272 L~~G~iv~~G~~~~~ 286 (820)
|++|+++...++++.
T Consensus 476 i~~Gri~~~~~~~~~ 490 (501)
T COG3845 476 IYEGRIVGIVPPEEA 490 (501)
T ss_pred eeCCceecccccccC
Confidence 999999988887653
No 383
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.92 E-value=6.8e-24 Score=258.01 Aligned_cols=126 Identities=28% Similarity=0.422 Sum_probs=108.2
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChHHHHHHHHHHHHhcCC---CEEEE
Q 003437 147 LTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGRRGVSGGERRRVSIGIDIIHKP---SLLFL 222 (820)
Q Consensus 147 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P---~lLll 222 (820)
+||.|++.|...+. + ..+..+.|+.+||.. ..+..+. .||||||||+.||++|+.+| +++||
T Consensus 792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~~~~-----tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQPAT-----TLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccCCcc-----cCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999998876532 1 123467899999986 3555554 69999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE------eCCeEEEEcCccchhh
Q 003437 223 DEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL------ARGRLVYMGSPVALPA 288 (820)
Q Consensus 223 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~~ 288 (820)
||||+|||+.....+++.|+++.++|.|||+++|++.. + ..+|+++.| ++|++++.|+++++..
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~-i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDV-I-KTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-HhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999999998889999999999974 4 579999999 6899999999988753
No 384
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.9e-25 Score=236.73 Aligned_cols=205 Identities=23% Similarity=0.357 Sum_probs=165.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++|+.|.|.... -=+..||++|++||++-|+|.||||||||++.|.|+..| .+|+|++||++++
T Consensus 322 ~lelrnvrfay~~~~-----------FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~P--qsG~I~ldg~pV~ 388 (546)
T COG4615 322 TLELRNVRFAYQDNA-----------FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP--QSGEILLDGKPVS 388 (546)
T ss_pred ceeeeeeeeccCccc-----------ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCC--CCCceeECCccCC
Confidence 499999999996431 247899999999999999999999999999999999864 5799999999997
Q ss_pred Cc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 127 TS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
.. +.|+..+-|+-|..+|+.+--.| +. ...+.++..|+++.|.+...-.=|+-.+-.||.||
T Consensus 389 ~e~ledYR~LfSavFsDyhLF~~ll~~e------------~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQ 453 (546)
T COG4615 389 AEQLEDYRKLFSAVFSDYHLFDQLLGPE------------GK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQ 453 (546)
T ss_pred CCCHHHHHHHHHHHhhhHhhhHhhhCCc------------cC---CChHHHHHHHHHHHHhhhhcccCCcccccccccch
Confidence 64 34556666787777777531111 10 12356778888888876543332322345799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI-ARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l-~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|||+++-.||+-+.+|+++||=-+.-||.-++.+.+.+--+ .++|+||+.+|||.. -+..+||++.+++|++++.-
T Consensus 454 kKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~--YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 454 KKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH--YFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch--hhhhHHHHHHHhcCceeecc
Confidence 99999999999999999999999999999999999887665 557999999999975 57789999999999998754
No 385
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.91 E-value=2.4e-24 Score=246.57 Aligned_cols=197 Identities=27% Similarity=0.405 Sum_probs=157.6
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...|+++||+..-+.. ...|++.++.+++||.+.|.||||||||||+|+|+|+-+.+ +|+|.+-
T Consensus 390 ~~~i~~~nl~l~~p~~-----------~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g--~G~I~~P--- 453 (604)
T COG4178 390 DHGITLENLSLRTPDG-----------QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG--SGRISMP--- 453 (604)
T ss_pred cceeEEeeeeEECCCC-----------CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC--CCceecC---
Confidence 3569999999986542 36899999999999999999999999999999999998643 4777542
Q ss_pred CCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC-CCCCCChHH
Q 003437 125 VTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNE-GRRGVSGGE 203 (820)
Q Consensus 125 ~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-~~~~LSGGe 203 (820)
....+-|+||.|.+... |.+|.|.++.... .. ..+.+.++|.++||++..++.=+.. =-+-||+||
T Consensus 454 -----~~~~~lflpQ~PY~p~G-tLre~l~YP~~~~---~~----~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GE 520 (604)
T COG4178 454 -----ADSALLFLPQRPYLPQG-TLREALCYPNAAP---DF----SDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGE 520 (604)
T ss_pred -----CCCceEEecCCCCCCCc-cHHHHHhCCCCCC---CC----ChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhH
Confidence 12346799999998877 9999998864321 12 2456788999999988765532211 124699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
||||++||.|+++|++++|||.|++||+.+...+++.|++-. .+.|||-+.|.+. +..+.++.+-+.
T Consensus 521 qQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 521 QQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeec
Confidence 999999999999999999999999999999999999998733 3799999999986 455667655544
No 386
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=2.9e-23 Score=252.14 Aligned_cols=125 Identities=29% Similarity=0.410 Sum_probs=105.1
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHhc---CCCEEE
Q 003437 146 MLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEGRRGVSGGERRRVSIGIDIIH---KPSLLF 221 (820)
Q Consensus 146 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSGGerqRv~ia~aL~~---~P~lLl 221 (820)
.+||.|.+.|...+. . ..+..++|+.+||... .++.+ ++|||||+||+.||++|+. +|+++|
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~~-----~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 468888888875432 0 1235678899999753 45554 4799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE------eCCeEEEEcCccch
Q 003437 222 LDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL------ARGRLVYMGSPVAL 286 (820)
Q Consensus 222 lDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~ 286 (820)
|||||+|||+.....+++.|+++.++|.|||+++|++.. + ..||++++| ++|++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~-i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDV-I-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 999999999999999999999998889999999999974 5 579999999 78999999998764
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.90 E-value=5.2e-24 Score=235.66 Aligned_cols=202 Identities=24% Similarity=0.352 Sum_probs=158.6
Q ss_pred CCCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECC
Q 003437 43 IPGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDG 122 (820)
Q Consensus 43 ~~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G 122 (820)
.+++.+.++|++|.|.++ ..++++++|-|.+++.+|++||||+|||||||++.|.+. |..|.|.-.-
T Consensus 385 ~p~pvi~~~nv~F~y~~~-----------~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~ 451 (614)
T KOG0927|consen 385 IPPPVIMVQNVSFGYSDN-----------PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHS 451 (614)
T ss_pred CCCCeEEEeccccCCCCc-----------chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--cccccccccc
Confidence 456679999999998653 159999999999999999999999999999999999885 4568875432
Q ss_pred EeCCCccccceEEEEccC--CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCC
Q 003437 123 KPVTTSYMKMVSSYVMQD--DQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEGRRGV 199 (820)
Q Consensus 123 ~~~~~~~~~~~~gyv~Q~--~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~L 199 (820)
+ ..+++.-|+ +.+.-+.++.|++.-.. ++....+.+..+|.++||... .+.++ ++|
T Consensus 452 H--------~~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~p~-----~~L 510 (614)
T KOG0927|consen 452 H--------NKLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVVPM-----SQL 510 (614)
T ss_pred c--------ccchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCccccccch-----hhc
Confidence 2 223344444 23333457777765322 222345678899999999854 44444 479
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE-
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV- 278 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv- 278 (820)
|+|||+||.+|+.++..|.+|+|||||+|||..+...+-+.|.+. ..+||+++||... +.++++++++..+|.+.
T Consensus 511 S~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrl-I~qVaeEi~~c~~~~~~~ 586 (614)
T KOG0927|consen 511 SDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFRL-ISQVAEEIWVCENGTVTK 586 (614)
T ss_pred ccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhhH-HHHHHHHhHhhccCceee
Confidence 999999999999999999999999999999999999988888665 4689999999985 89999999999987554
Q ss_pred EEcC
Q 003437 279 YMGS 282 (820)
Q Consensus 279 ~~G~ 282 (820)
+.|.
T Consensus 587 ~~G~ 590 (614)
T KOG0927|consen 587 WDGD 590 (614)
T ss_pred cCcc
Confidence 4444
No 388
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.90 E-value=1.5e-23 Score=232.01 Aligned_cols=215 Identities=26% Similarity=0.374 Sum_probs=151.9
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...+.++|+++++.+ +.+++|+++++.+|+.++|+|+|||||||+|++|.|...|-|..=.++.-.++
T Consensus 73 s~dvk~~sls~s~~g------------~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e 140 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHG------------VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSRE 140 (614)
T ss_pred cccceeeeeeeccCC------------ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhccc
Confidence 346999999999854 45999999999999999999999999999999999998765544344443443
Q ss_pred CCCccccceEEEEccCCCCCCCCCHHHHHHHHHH------------------hcCCCCCCHHHHHHHHHHHHHHcCCC-c
Q 003437 125 VTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAE------------------VRLPPSISRDEKKKRVYELLDQLGLR-S 185 (820)
Q Consensus 125 ~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~------------------~~~~~~~~~~~~~~~v~~~l~~lgL~-~ 185 (820)
+.+... +.+-+|.+ +.-..+..+....+ .|. ..+..+..+.++.++|..+|.. +
T Consensus 141 ~~ps~~-~av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~-~~~d~~~~~~k~~~il~glgf~~~ 213 (614)
T KOG0927|consen 141 IEPSEK-QAVQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERL-DEMDNDTFEAKAAKILHGLGFLSE 213 (614)
T ss_pred CCCchH-HHHHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHH-HhhCchhHHHHHHHHHHhcCCCHh
Confidence 332111 11111110 00001111111000 000 1123344456677788777764 4
Q ss_pred cccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhh
Q 003437 186 ATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQML 265 (820)
Q Consensus 186 ~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 265 (820)
..++.+. ++|||+|.|+++||+|..+|++|+|||||+|||..+..-+-+.|.+... .++|+++|.-+. +-..
T Consensus 214 m~~k~~~-----~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~QDf-ln~v 285 (614)
T KOG0927|consen 214 MQDKKVK-----DLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHSQDF-LNGV 285 (614)
T ss_pred HHHHHhh-----ccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecchhh-hhhH
Confidence 5666664 6999999999999999999999999999999999999999888877532 289999998775 8889
Q ss_pred cCEEEEEeCCe-EEEEcCccch
Q 003437 266 LDRIIVLARGR-LVYMGSPVAL 286 (820)
Q Consensus 266 ~D~v~lL~~G~-iv~~G~~~~~ 286 (820)
|.+|+-|++++ +.|.|+-+..
T Consensus 286 CT~Ii~l~~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 286 CTNIIHLDNKKLIYYEGNYDQY 307 (614)
T ss_pred hhhhheecccceeeecCCHHHH
Confidence 99999999998 5667776544
No 389
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.89 E-value=2.4e-22 Score=218.14 Aligned_cols=188 Identities=28% Similarity=0.345 Sum_probs=146.1
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.++|.+++++|++- -|+-=.++|..||+++++||||-||||+.++|+|.+.| ++|+ ..
T Consensus 342 lv~y~~~~k~~g~F-------------~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP--deg~----~~--- 399 (591)
T COG1245 342 LVEYPDLKKTYGDF-------------KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP--DEGS----EE--- 399 (591)
T ss_pred eeecchheeecCce-------------EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccC--CCCC----Cc---
Confidence 35566666665421 35555677888999999999999999999999998864 5676 11
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
.-.++|=||--.--...||++.|.-...-+.. ..-...++++-|.|++..++.+. +|||||.||
T Consensus 400 ----~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~-------~s~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQR 463 (591)
T COG1245 400 ----DLKVSYKPQYISPDYDGTVEDLLRSAIRSAFG-------SSYFKTEIVKPLNLEDLLERPVD-----ELSGGELQR 463 (591)
T ss_pred ----cceEeecceeecCCCCCcHHHHHHHhhhhhcc-------cchhHHhhcCccchHHHHhcccc-----cCCchhHHH
Confidence 22357777753332446999988655432111 11234578889999998888876 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
|+||.+|..++++.+||||++.||++.+..+-+.||+.+. .++|.+++-||.-. +..++||+++..
T Consensus 464 vaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 464 VAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 9999999999999999999999999999999999999986 58999999999874 666789987764
No 390
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=3.6e-22 Score=204.54 Aligned_cols=169 Identities=17% Similarity=0.179 Sum_probs=122.6
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEE--CCEeCC----CccccceEEEEccCCCCCCCC
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRI--DGKPVT----TSYMKMVSSYVMQDDQLFPML 147 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i--~G~~~~----~~~~~~~~gyv~Q~~~l~~~l 147 (820)
-++++++.+.+| +.+|+|||||||||||.+|...+. |+... .|..+. .......+.+++|+..++++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~-----~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~- 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG-----GKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN- 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc-----CCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCC-
Confidence 357778888887 889999999999999999985432 22111 122111 11112346778887655541
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHH----hcCCCEEEEe
Q 003437 148 TVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDI----IHKPSLLFLD 223 (820)
Q Consensus 148 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL----~~~P~lLllD 223 (820)
. .. ....++++++++. .+..++.+ +.||+|||||++||++| +.+|+++|||
T Consensus 84 ------------~----~~-~~~~~~~~~~l~~---~~~~~~~~-----~~lS~G~k~r~~ia~al~~~~~~~p~illlD 138 (198)
T cd03276 84 ------------P----LC-VLSQDMARSFLTS---NKAAVRDV-----KTLSGGERSFSTVCLLLSLWEVMESPFRCLD 138 (198)
T ss_pred ------------c----CC-HHHHHHHHHHhcc---ccccCCcc-----cccChhHHHHHHHHHHHHHhcccCCCEEEec
Confidence 0 11 1123567777776 45555555 47999999999999999 5899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC---CcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 224 EPTSGLDSTSAYSVVEKVKDIART---GSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 224 EPtsgLD~~~~~~i~~~L~~l~~~---g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
|||+|||..++..+.+.|+++.++ +.|||+++|+++. +.. +|+|.+|..++
T Consensus 139 EP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~-i~~-~d~v~~~~~~~ 192 (198)
T cd03276 139 EFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG-LAS-SDDVKVFRMKD 192 (198)
T ss_pred CcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-ccc-ccceeEEEecC
Confidence 999999999999999999998653 3689999999985 655 59999998753
No 391
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.87 E-value=2.5e-22 Score=212.88 Aligned_cols=179 Identities=17% Similarity=0.256 Sum_probs=118.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe--CCCc--------cccceEEEEccCCCC-CCCCCHHHHHH
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP--VTTS--------YMKMVSSYVMQDDQL-FPMLTVFETFM 154 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~--~~~~--------~~~~~~gyv~Q~~~l-~~~lTV~e~l~ 154 (820)
.+++|+|||||||||||++|++.+.+ ..|++..++.. +... ...-.+.|..|++.. .-..++.+...
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~--~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~ 100 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGE--KSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSS 100 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC--CcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCce
Confidence 39999999999999999999998743 24666543321 0000 111112344443321 00111111100
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc---------ccCCC--------CCCCChHHHHHHHHHHHHhcC-
Q 003437 155 FAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTY---------IGNEG--------RRGVSGGERRRVSIGIDIIHK- 216 (820)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~---------ig~~~--------~~~LSGGerqRv~ia~aL~~~- 216 (820)
..+.. + +....+.++++++.+|+....... +.+.. +..||||||||++||++++.+
T Consensus 101 ---~~~in-g--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~ 174 (247)
T cd03275 101 ---SYRIN-G--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHS 174 (247)
T ss_pred ---EEEEC-C--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhc
Confidence 00111 0 011234567888889986432111 11111 267999999999999999875
Q ss_pred ---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 217 ---PSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 217 ---P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
|+++|+||||+|||+..+..+.+.|++++++|.+||++||+++ +...||++++|..
T Consensus 175 ~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~--~~~~~d~i~~~~~ 233 (247)
T cd03275 175 YQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEE--FFSKADALVGVYR 233 (247)
T ss_pred cCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHH--HHhhCCeEEEEEe
Confidence 8999999999999999999999999999877999999999965 5678999999875
No 392
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.85 E-value=6.6e-21 Score=212.58 Aligned_cols=204 Identities=21% Similarity=0.279 Sum_probs=156.9
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|++++|+..-+.+ +..+++|+|++|..|+-+.|.||||||||+|+|+|+|+.+ ..+|++.--...-
T Consensus 432 n~i~~e~v~l~tPt~----------g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp--~~~G~l~k~~~~~ 499 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTN----------GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP--STGGKLTKPTDGG 499 (659)
T ss_pred ceEEeeeeeecCCCC----------CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc--cCCCeEEecccCC
Confidence 469999999986542 2358899999999999999999999999999999999984 3579886543321
Q ss_pred CCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC------CCCCC
Q 003437 126 TTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNE------GRRGV 199 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~------~~~~L 199 (820)
. +.+-||||.|.+.-. |.||.+.|+..--.+ ..+....+++.+.|+.++|.|..++.=|-+ =-..|
T Consensus 500 ~-----~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvL 571 (659)
T KOG0060|consen 500 P-----KDLFFLPQRPYMTLG-TLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVL 571 (659)
T ss_pred C-----CceEEecCCCCcccc-chhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhc
Confidence 1 346799999987666 999999987431111 111123456777788777776554432211 11369
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
|+||+||+++||.+.++|++-||||-||++|......+.+.+|++ |.|.|-+.|..+. .++=|.++-|+.
T Consensus 572 S~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~---giT~iSVgHRkSL--~kfHd~~L~~~g 641 (659)
T KOG0060|consen 572 SPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM---GITFISVGHRKSL--WKFHDYVLRMDG 641 (659)
T ss_pred CHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc---CCeEEEeccHHHH--HhhhhEEEEecC
Confidence 999999999999999999999999999999999999988887764 9999999999874 455677887865
No 393
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.85 E-value=9.4e-21 Score=187.00 Aligned_cols=211 Identities=22% Similarity=0.309 Sum_probs=158.7
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|++.++.|+|+.. -+++-|+|+.++.|..+.++|.||||||||||+|+|-..-. .|.|.++|++.
T Consensus 12 ~aievsgl~f~y~~~-----------dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~--~~~v~Vlgrsa 78 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVS-----------DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG--GGVVQVLGRSA 78 (291)
T ss_pred ceEEEeccEEecccC-----------CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc--CCeEEEcCcCc
Confidence 459999999999753 26999999999999999999999999999999999954322 49999999864
Q ss_pred CCc---cccceEEEEcc----------CCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 003437 126 TTS---YMKMVSSYVMQ----------DDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIG 192 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q----------~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig 192 (820)
-.. .-.....|+-- +-.+...+++.+.| |+.. +... +|-+++++.|++.-... +
T Consensus 79 FhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mi-fgV~-----g~dp----~Rre~LI~iLDIdl~WR--m- 145 (291)
T KOG2355|consen 79 FHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGVG-----GDDP----ERREKLIDILDIDLRWR--M- 145 (291)
T ss_pred cccccccccCceeEecccccccccccccccccccccHHHHH-hhcc-----CCCh----hHhhhhhhheeccceEE--E-
Confidence 210 00111223221 22233456765544 4432 2222 34456677777642211 1
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEE
Q 003437 193 NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIV 271 (820)
Q Consensus 193 ~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~l 271 (820)
..+|-|||+||.|++.|++.=++|+|||-|-.||..++..+++.|++-.+ +|.|||..||-.+- +.....+++.
T Consensus 146 ----HkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDG-Le~Wpthl~y 220 (291)
T KOG2355|consen 146 ----HKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDG-LETWPTHLVY 220 (291)
T ss_pred ----eeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccc-hhhcchhEEE
Confidence 35999999999999999999999999999999999999999999999876 59999999999875 7788999999
Q ss_pred EeCCeEEEEcCccchh
Q 003437 272 LARGRLVYMGSPVALP 287 (820)
Q Consensus 272 L~~G~iv~~G~~~~~~ 287 (820)
|++|+++-.-+.+++.
T Consensus 221 i~~Gkl~~~l~~~~i~ 236 (291)
T KOG2355|consen 221 IKSGKLVDNLKYQKIK 236 (291)
T ss_pred ecCCeeeeccccchhh
Confidence 9999999755544443
No 394
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=3.1e-21 Score=207.28 Aligned_cols=197 Identities=24% Similarity=0.322 Sum_probs=154.9
Q ss_pred ccCCCCCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEE
Q 003437 39 GLKMIPGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSV 118 (820)
Q Consensus 39 ~~~~~~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I 118 (820)
++...+++.|-++||+|.|++. +++++.++|-|.--..++|+||||.||||||++|.|-+.| ..|+.
T Consensus 578 ep~~L~PPvLGlH~VtFgy~gq-----------kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P--~~GE~ 644 (807)
T KOG0066|consen 578 EPTKLNPPVLGLHDVTFGYPGQ-----------KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP--NDGEL 644 (807)
T ss_pred CCCCCCCCeeecccccccCCCC-----------CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC--Ccchh
Confidence 3455667789999999999753 4689999999999999999999999999999999998754 45765
Q ss_pred EECCEeCCCccccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 003437 119 RIDGKPVTTSYMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGR 196 (820)
Q Consensus 119 ~i~G~~~~~~~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~ 196 (820)
.- ..+-++|+..|+. .|-..-|.-|.|.-... ++ .+.+...|-.+||...++|.- +
T Consensus 645 RK--------nhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FN------lp----yq~ARK~LG~fGL~sHAHTik----i 702 (807)
T KOG0066|consen 645 RK--------NHRLRIGWFDQHANEALNGEETPVEYLQRKFN------LP----YQEARKQLGTFGLASHAHTIK----I 702 (807)
T ss_pred hc--------cceeeeechhhhhHHhhccccCHHHHHHHhcC------CC----hHHHHHHhhhhhhhhccceEe----e
Confidence 32 2345689888864 45556677777653322 22 234567889999998888863 3
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
..||||||-||++|.--+..|+||||||||+.||..+...+.+.|.+. ...||+++||... +.+.--.++|+.+
T Consensus 703 kdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 703 KDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVEN 776 (807)
T ss_pred eecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEcc
Confidence 579999999999999999999999999999999999999988888776 4579999999875 4444345666655
No 395
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.85 E-value=8e-23 Score=208.81 Aligned_cols=207 Identities=25% Similarity=0.388 Sum_probs=183.1
Q ss_pred HHHHHHHHhhHHHhhcChHHH-HHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH-hhhhcHHHHHHH
Q 003437 525 REVAVLSWRTALNVIRTPELF-LSREIVFAVMALILSSLFKNLSHHDFKTINRLLNFYIFAVCLVFF-SSNDAVPTFIQE 602 (820)
Q Consensus 525 ~Q~~~L~~R~~~~~~Rdp~~~-~~r~~~~i~~~lliG~lf~~l~~~~~~~~~~~~g~~ff~~~~~~~-~~~~~i~~f~~e 602 (820)
+|++.+++|+++..+|||.+. ...++..+++++++|.+|.+++ ++.++. ++.+++++.+.+.++ ...+....+..|
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLG-NSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERE 78 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccc-cccccc-ccceeeehhhHHhhhhhcccchhhhhhh
Confidence 599999999999999999888 8999999999999999999887 333444 556666666665553 344555788999
Q ss_pred hhHHHhHhcCCCCChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhcchH
Q 003437 603 RFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSS-LLNFWMILFASLITTNAYVMLVSALVPSY 681 (820)
Q Consensus 603 R~vf~RE~~~g~Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~-f~~f~l~l~l~~~~~~s~~~~i~a~~ps~ 681 (820)
|..+.||+.++.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+ ++.+++.++++.++..++|.++++++++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~ 158 (210)
T PF01061_consen 79 RGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFESFFLFLLILLLSILCSSGLGLLLAALFPSF 158 (210)
T ss_pred ccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccccchheecccccccccccccccccccchhhh
Confidence 99999999999999999999999999999999999999999999999876 66666777777778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccceecCCCCCcceeehhccChhhHHHHHHHHhhc
Q 003437 682 IAGYAVVIATTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTNEF 733 (820)
Q Consensus 682 ~~a~~v~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~nef 733 (820)
..+..+.+.+..++++++|.++|.+.+|+|++|+.|+||++|++|++..++|
T Consensus 159 ~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 159 RDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999988889999999999999999999999999999999999999887
No 396
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=2.3e-21 Score=213.74 Aligned_cols=201 Identities=23% Similarity=0.325 Sum_probs=142.3
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
..+|...|.+..|++ +.+|++-++++..|..++|+|+||+|||||||+|+. |.| ++.+
T Consensus 78 ~~Di~~~~fdLa~G~------------k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~--------~~v--~~f~ 135 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG------------KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN--------GQV--SGFH 135 (582)
T ss_pred ccceeeeeeeeeecc------------hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh--------cCc--CccC
Confidence 345888889988864 359999999999999999999999999999999996 222 2222
Q ss_pred CCCccccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCChH
Q 003437 125 VTTSYMKMVSSYVMQDD-QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT-HTYIGNEGRRGVSGG 202 (820)
Q Consensus 125 ~~~~~~~~~~gyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~ig~~~~~~LSGG 202 (820)
+... .+ -.|++-.. .+..+.++.+-+.--..+. ... +..+...++|..+|..+.. ...+ +.||||
T Consensus 136 veqE-~~--g~~t~~~~~~l~~D~~~~dfl~~e~~l~--~~~---~l~ei~~~~L~glGFt~emq~~pt-----~slSGG 202 (582)
T KOG0062|consen 136 VEQE-VR--GDDTEALQSVLESDTERLDFLAEEKELL--AGL---TLEEIYDKILAGLGFTPEMQLQPT-----KSLSGG 202 (582)
T ss_pred chhh-ee--ccchHHHhhhhhccHHHHHHHHhhhhhh--ccc---hHHHHHHHHHHhCCCCHHHHhccc-----cccCcc
Confidence 2111 11 12333222 2333333333222111111 011 3344455589999997653 3333 479999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE-EEc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV-YMG 281 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G 281 (820)
-|-|+++||||..+|+||||||||+.||..+..-+.+.|+.+ +.|+|+++||-.. +-..|..|+-+++-++- |.|
T Consensus 203 WrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHDr~F-Ln~V~tdIIH~~~~kL~~YkG 278 (582)
T KOG0062|consen 203 WRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHDRNF-LNTVCTDIIHLENLKLDYYKG 278 (582)
T ss_pred hhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEeccHHH-HHHHHHHHHHHhhhhhhhhcC
Confidence 999999999999999999999999999999999999999876 4899999999875 77788888888775553 455
Q ss_pred Ccc
Q 003437 282 SPV 284 (820)
Q Consensus 282 ~~~ 284 (820)
.-+
T Consensus 279 N~~ 281 (582)
T KOG0062|consen 279 NYS 281 (582)
T ss_pred cHH
Confidence 433
No 397
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=6.7e-20 Score=202.30 Aligned_cols=202 Identities=22% Similarity=0.342 Sum_probs=157.9
Q ss_pred CCCCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEEC
Q 003437 42 MIPGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRID 121 (820)
Q Consensus 42 ~~~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~ 121 (820)
...++.|++.+|++.|...+ . +++.+++..++--+..+++|+||+||||++|++.|-+. +..|.+.+.
T Consensus 357 ~~~~p~l~i~~V~f~y~p~~---------y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~ 424 (582)
T KOG0062|consen 357 VLSPPNLRISYVAFEYTPSE---------Y-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRH 424 (582)
T ss_pred cCCCCeeEEEeeeccCCCcc---------h-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeec
Confidence 34566799999999886431 1 58999999999999999999999999999999999664 346777654
Q ss_pred CEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCC
Q 003437 122 GKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEGRRGVS 200 (820)
Q Consensus 122 G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LS 200 (820)
.+.+++|-.|...-+-.+.|-+ +.+....+ .+.++ +.+++-+..+||+.. +...+ .+||
T Consensus 425 --------~r~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~--pG~~~----ee~r~hl~~~Gl~g~la~~si-----~~LS 484 (582)
T KOG0062|consen 425 --------PRLRIKYFAQHHVDFLDKNVNA-VDFMEKSF--PGKTE----EEIRRHLGSFGLSGELALQSI-----ASLS 484 (582)
T ss_pred --------ccceecchhHhhhhHHHHHhHH-HHHHHHhC--CCCCH----HHHHHHHHhcCCCchhhhccc-----cccC
Confidence 3566899999765333344433 33333333 23333 446677899999753 33223 4799
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
||||=||++|.....+|.+|+|||||+.||..+-..+.+.|+.. +..||++|||.+. +..+|+.+++.++|++.-
T Consensus 485 GGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~f-i~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 485 GGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEEF-ISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHHH-HhhcCceeEEEcCCcEEe
Confidence 99999999999999999999999999999999999988888776 5679999999886 889999999999999874
No 398
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.82 E-value=1e-19 Score=188.46 Aligned_cols=80 Identities=19% Similarity=0.232 Sum_probs=68.5
Q ss_pred CCCCChHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-cEEEEEEcCccHHHHhhcC--
Q 003437 196 RRGVSGGERRRVSIGIDI----IHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-G-SIVLMTIHQPSYRIQMLLD-- 267 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL----~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g-~tvi~~~H~~~~~i~~~~D-- 267 (820)
+..||||||||+.++.+| +.+|+++|+||||+|||+.++..+++.|++++++ | .++|++||+... +.+.+|
T Consensus 124 ~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~~ 202 (213)
T cd03277 124 PHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEKM 202 (213)
T ss_pred hhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCce
Confidence 457999999998877554 5899999999999999999999999999999876 5 579999999764 556666
Q ss_pred EEEEEeCCe
Q 003437 268 RIIVLARGR 276 (820)
Q Consensus 268 ~v~lL~~G~ 276 (820)
+|++|++|+
T Consensus 203 ~v~~l~~g~ 211 (213)
T cd03277 203 TVLCVYNGP 211 (213)
T ss_pred EEEEEecCc
Confidence 788898886
No 399
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.81 E-value=4.9e-20 Score=189.18 Aligned_cols=147 Identities=16% Similarity=0.189 Sum_probs=109.2
Q ss_pred ceeeeeEEEeCCc-EEEEEcCCCCcHHHHHHHHH--------cCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCC
Q 003437 74 LLHDISGQAIRGE-IMAIMGPSGAGKSTFLDALA--------GRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLF 144 (820)
Q Consensus 74 iL~~vs~~i~~Ge-~~allGpnGsGKSTLl~~L~--------G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~ 144 (820)
-+.++|+++.+|+ +++|+||||||||||||+|+ |...| ... ...++|+.|...
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp--~~~--------------~~~~~~~~~~~~-- 77 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIP--AAE--------------GSSLPVFENIFA-- 77 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcc--ccc--------------cccCcCccEEEE--
Confidence 3567899999995 89999999999999999998 32211 000 011233333211
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 003437 145 PMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDE 224 (820)
Q Consensus 145 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDE 224 (820)
.++..+..+..+ ..+|+||||++.|+++ +.+|+++++||
T Consensus 78 -----------------------------------~lg~~~~l~~~~-----s~fs~g~~~~~~i~~~-~~~p~llllDE 116 (200)
T cd03280 78 -----------------------------------DIGDEQSIEQSL-----STFSSHMKNIARILQH-ADPDSLVLLDE 116 (200)
T ss_pred -----------------------------------ecCchhhhhcCc-----chHHHHHHHHHHHHHh-CCCCcEEEEcC
Confidence 111111111112 2599999999999987 58999999999
Q ss_pred CCCCCCHHHHHHHH-HHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 225 PTSGLDSTSAYSVV-EKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 225 PtsgLD~~~~~~i~-~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|++|||+.....+. ..++.+.+.|.++|++||+. ++..+||++++|++|++++.+
T Consensus 117 p~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 117 LGSGTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 99999999999997 46888877799999999985 467899999999999998763
No 400
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.81 E-value=4.9e-20 Score=200.34 Aligned_cols=171 Identities=27% Similarity=0.472 Sum_probs=128.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEE-----------EECCEeCCCccccc------e----EEEEccC
Q 003437 82 AIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSV-----------RIDGKPVTTSYMKM------V----SSYVMQD 140 (820)
Q Consensus 82 i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I-----------~i~G~~~~~~~~~~------~----~gyv~Q~ 140 (820)
.++|++++|+||||-||||-+|+|+|.+.|.- |+- .+.|.++.. ++++ + .-||.--
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNL--G~~~~pp~wdeVi~~FrGtELq~-YF~~l~~g~~r~v~K~QYVd~i 173 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNL--GRYEDPPSWDEVIKRFRGTELQN-YFKKLYEGELRAVHKPQYVDLI 173 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCC--CCCCCCCCHHHHHHHhhhhHHHH-HHHHHHcCCcceecchHHHHHH
Confidence 46899999999999999999999999886532 221 111221110 0111 0 1122222
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEE
Q 003437 141 DQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLL 220 (820)
Q Consensus 141 ~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lL 220 (820)
+..+-. ||.|-|.-. ....+.+++++.|+|++..|+.+. .|||||.||++||.+++++++++
T Consensus 174 Pk~~KG-~v~elLk~~------------de~g~~devve~l~L~nvl~r~v~-----~LSGGELQr~aIaa~l~rdADvY 235 (591)
T COG1245 174 PKVVKG-KVGELLKKV------------DERGKFDEVVERLGLENVLDRDVS-----ELSGGELQRVAIAAALLRDADVY 235 (591)
T ss_pred HHHhcc-hHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhhh-----hcCchHHHHHHHHHHHhccCCEE
Confidence 222323 666655321 122467889999999999998886 69999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 221 FLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 221 llDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
++|||||-||...+..+.+.+++|++.+++||++.||+.- +..++|-|.++..
T Consensus 236 ~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLav-LD~lsD~vhI~YG 288 (591)
T COG1245 236 FFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAV-LDYLSDFVHILYG 288 (591)
T ss_pred EEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHH-HHHhhheeEEEec
Confidence 9999999999999999999999999889999999999863 5667898888864
No 401
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.80 E-value=1.6e-18 Score=199.91 Aligned_cols=128 Identities=28% Similarity=0.447 Sum_probs=107.4
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCC---CEEEE
Q 003437 146 MLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKP---SLLFL 222 (820)
Q Consensus 146 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P---~lLll 222 (820)
.|||.|...|+... + ...+.-+.|..+||.-.. +|. ...+|||||.|||-+|.+|..+. -+.+|
T Consensus 783 ~MTveEA~~FF~~~------p---~I~rkLqtL~dVGLgYi~---LGQ-patTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI------P---KIARKLQTLVDVGLGYIK---LGQ-PATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc------h---HHHHHHHHHHHcCcceEe---cCC-ccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 57888888887542 1 234556778888997432 453 34579999999999999999877 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE------eCCeEEEEcCccchhh
Q 003437 223 DEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL------ARGRLVYMGSPVALPA 288 (820)
Q Consensus 223 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~~ 288 (820)
||||+||-......+++.|.+|.+.|.|||++.|+++ +...+|.|+-| ..|+||+.|+|+++.+
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLd--VIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccc--eEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999999999999999999999999999999999986 66789999998 3579999999999875
No 402
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.79 E-value=2.8e-19 Score=183.32 Aligned_cols=138 Identities=22% Similarity=0.324 Sum_probs=105.8
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHH
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFET 152 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~ 152 (820)
.+++|+++.. |++++|+||||||||||+|+|+|... +...|.++... .+++|.+.+++.+|+.|+
T Consensus 15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a~------~~~~q~~~l~~~~~~~d~ 79 (199)
T cd03283 15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCAS------SFELPPVKIFTSIRVSDD 79 (199)
T ss_pred eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEecC------ccCcccceEEEeccchhc
Confidence 4778887765 79999999999999999999998542 12345444321 367787789999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 003437 153 FMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDST 232 (820)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~ 232 (820)
+.++... ...+ .+++.++++.+++ .+|+++|+|||++|||+.
T Consensus 80 l~~~~s~------~~~e-~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~~ 121 (199)
T cd03283 80 LRDGISY------FYAE-LRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNSR 121 (199)
T ss_pred cccccCh------HHHH-HHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCHH
Confidence 9775421 1223 2567778877752 699999999999999999
Q ss_pred HHHHHHH-HHHHHHhCCcEEEEEEcCccHHHHh
Q 003437 233 SAYSVVE-KVKDIARTGSIVLMTIHQPSYRIQM 264 (820)
Q Consensus 233 ~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~ 264 (820)
....+.. +++.+.+.|.++|++||+++. +..
T Consensus 122 ~~~~l~~~ll~~l~~~~~tiiivTH~~~~-~~~ 153 (199)
T cd03283 122 ERQAASAAVLKFLKNKNTIGIISTHDLEL-ADL 153 (199)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCcHHH-HHh
Confidence 9988754 788888779999999999874 443
No 403
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.79 E-value=6.8e-19 Score=189.25 Aligned_cols=208 Identities=25% Similarity=0.421 Sum_probs=153.3
Q ss_pred EEEEEEEEEECcccccc-------------cc-cccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC---
Q 003437 48 LEFKNLSYSIMKKQKKD-------------GV-WITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIA--- 110 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~-------------~~-~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~--- 110 (820)
+.++|+++.+....-.. |. .......+|+|||++++||++++|+|+|||||||||++|.|...
T Consensus 358 ~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ 437 (593)
T COG2401 358 IKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRG 437 (593)
T ss_pred cccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhccc
Confidence 78888888775321100 11 12235679999999999999999999999999999999999752
Q ss_pred ---CCCCceEEEECCEeCCCccccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 003437 111 ---QGSLEGSVRIDGKPVTTSYMKMVSSYVMQDD-QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA 186 (820)
Q Consensus 111 ---~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 186 (820)
..|++|.|.+--.. ..+.+|-+. .-|...|+.|++.-- + -+...+.++|.+.||.+.
T Consensus 438 ee~y~p~sg~v~vp~nt--------~~a~iPge~Ep~f~~~tilehl~s~---------t--GD~~~AveILnraGlsDA 498 (593)
T COG2401 438 EEKYRPDSGKVEVPKNT--------VSALIPGEYEPEFGEVTILEHLRSK---------T--GDLNAAVEILNRAGLSDA 498 (593)
T ss_pred ccccCCCCCceeccccc--------hhhccCcccccccCchhHHHHHhhc---------c--CchhHHHHHHHhhccchh
Confidence 23577877653211 234455432 223355777766311 0 112346688999999763
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhh
Q 003437 187 THTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQML 265 (820)
Q Consensus 187 ~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~ 265 (820)
.- -.+..+.||-|||.|+.||.++..+|.+++.||=.+.||+.++..+.+-|.++++ .|.|++++||+|+. +..+
T Consensus 499 vl---yRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv-~~AL 574 (593)
T COG2401 499 VL---YRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV-GNAL 574 (593)
T ss_pred hh---hhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH-Hhcc
Confidence 21 1123457999999999999999999999999999999999999999999999986 49999999999975 6666
Q ss_pred -cCEEEEEeCCeEE
Q 003437 266 -LDRIIVLARGRLV 278 (820)
Q Consensus 266 -~D~v~lL~~G~iv 278 (820)
-|+++++.=|++.
T Consensus 575 ~PD~li~vgYg~v~ 588 (593)
T COG2401 575 RPDTLILVGYGKVP 588 (593)
T ss_pred CCceeEEeeccccc
Confidence 7888888766543
No 404
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.78 E-value=2.6e-18 Score=173.06 Aligned_cols=74 Identities=22% Similarity=0.311 Sum_probs=68.6
Q ss_pred CChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 199 VSGGERRRVSIGIDII----HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 199 LSGGerqRv~ia~aL~----~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
||||||||++||++|+ .+|+++++|||+++||+..+..+.+.|++++++|.++|+++|+++. ...+|+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~--~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEM--FENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH--HhhCCeEEEEEE
Confidence 9999999999999996 6999999999999999999999999999998778999999999863 468999999875
No 405
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.77 E-value=9.5e-18 Score=212.53 Aligned_cols=200 Identities=21% Similarity=0.315 Sum_probs=145.9
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH-cC----CC--CCCCceEEEECCEeCCCcc-------------ccc-
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALA-GR----IA--QGSLEGSVRIDGKPVTTSY-------------MKM- 132 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~-G~----~~--~~~~~G~I~i~G~~~~~~~-------------~~~- 132 (820)
=|+||+..|+-|.+++|.|.||||||||++-.. -. +. .....--|.+|..++.... .|+
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 489999999999999999999999999996433 11 00 0112345777766653100 000
Q ss_pred --------e----------------------EEEEccCCCCCC--------------------------------CCCHH
Q 003437 133 --------V----------------------SSYVMQDDQLFP--------------------------------MLTVF 150 (820)
Q Consensus 133 --------~----------------------~gyv~Q~~~l~~--------------------------------~lTV~ 150 (820)
. -|++-=+..++| .|||.
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ 1664 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIE 1664 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHH
Confidence 0 022211111111 46777
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcC---CCEEEEeCCCC
Q 003437 151 ETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHK---PSLLFLDEPTS 227 (820)
Q Consensus 151 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~---P~lLllDEPts 227 (820)
|.+.|+.. ..+-.+.-+.|..+||.... +|. ...+|||||.||+-||..|..+ +.+++|||||+
T Consensus 1665 ea~~~F~~---------~~~i~~~L~~L~~vGLgYl~---LGq-~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~ 1731 (1809)
T PRK00635 1665 EVAETFPF---------LKKIQKPLQALIDNGLGYLP---LGQ-NLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIAT 1731 (1809)
T ss_pred HHHHHhhc---------cHHHHHHHHHHHHcCCCeee---CCC-cCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCC
Confidence 77777632 11234566788999997643 443 2347999999999999999875 78999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe------CCeEEEEcCccchhh
Q 003437 228 GLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA------RGRLVYMGSPVALPA 288 (820)
Q Consensus 228 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~------~G~iv~~G~~~~~~~ 288 (820)
||++.....+++.|++|.+.|.|||++.|+++ +...||.|+-|- .|+||+.|+|+++..
T Consensus 1732 GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~--~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1732 SLDNQQKSALLVQLRTLVSLGHSVIYIDHDPA--LLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH--HHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 99999999999999999999999999999986 445699999994 479999999999865
No 406
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.77 E-value=1.5e-18 Score=191.10 Aligned_cols=183 Identities=22% Similarity=0.320 Sum_probs=133.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|.++||-.--+. ...++..++|.|++|-.+.|+||||||||+|.|+|+|+.+- ..|...+ +
T Consensus 482 I~lenIpvItP~-----------~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv--y~g~L~~------P 542 (728)
T KOG0064|consen 482 IILENIPVITPA-----------GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV--YNGLLSI------P 542 (728)
T ss_pred eEEecCceeccC-----------cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc--cCCeeec------C
Confidence 666666554332 23488999999999999999999999999999999998842 2343322 2
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHH---hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC----CCCC
Q 003437 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAE---VRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGR----RGVS 200 (820)
Q Consensus 128 ~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~---~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~----~~LS 200 (820)
...++-|+||.|..-- -|.+|.+.++-. ++ ..+.++ +....+|+.+.|++.+.+-.|=+.+ .-||
T Consensus 543 --~~~~mFYIPQRPYms~-gtlRDQIIYPdS~e~~~-~kg~~d----~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~Ls 614 (728)
T KOG0064|consen 543 --RPNNIFYIPQRPYMSG-GTLRDQIIYPDSSEQMK-RKGYTD----QDLEAILDIVHLEHILQREGGWDAVRDWKDVLS 614 (728)
T ss_pred --CCcceEeccCCCccCc-CcccceeecCCcHHHHH-hcCCCH----HHHHHHHHHhhHHHHHHhccChhhhccHHhhcc
Confidence 2345789999987653 377777766421 11 012222 3455666666666554443321111 2599
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccH
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
||||||+++||.+-++|+..+|||-||+..+.....+.+..+. .|.+.|-++|+|+.
T Consensus 615 gGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrpsl 671 (728)
T KOG0064|consen 615 GGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPSL 671 (728)
T ss_pred chHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCccH
Confidence 9999999999999999999999999999999888888877654 49999999999985
No 407
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=9.2e-18 Score=180.90 Aligned_cols=76 Identities=26% Similarity=0.418 Sum_probs=68.5
Q ss_pred CCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 198 GVSGGERRRVSIGIDIIH----KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~----~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
.|||||+||+++|++++. +|+++++||||++||+.....+.+.|+++.+ +.|+|+++|++. +..++|++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999987654 9999999999999999999999999999865 789999999986 457899999998
Q ss_pred CCe
Q 003437 274 RGR 276 (820)
Q Consensus 274 ~G~ 276 (820)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 764
No 408
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.74 E-value=2.6e-18 Score=179.00 Aligned_cols=152 Identities=20% Similarity=0.266 Sum_probs=115.0
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEE-EEccCCCCCCCCCHH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSS-YVMQDDQLFPMLTVF 150 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~g-yv~Q~~~l~~~lTV~ 150 (820)
..+.+|++++..+|++++|.||||+||||||++++-.. ...++| |||.+...++
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~--------------------~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV--------------------LMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH--------------------HHHHhCCCcCcccEEEe-----
Confidence 35899999999999999999999999999999998210 011222 5555432111
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHH--hcCCCEEEEeCC---
Q 003437 151 ETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDI--IHKPSLLFLDEP--- 225 (820)
Q Consensus 151 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL--~~~P~lLllDEP--- 225 (820)
.+++++..+|+.+.. . +++|.|+++++.+++++ +.+|+++|||||
T Consensus 72 ----------------------~~~~il~~~~l~d~~---~-----~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~g 121 (222)
T cd03285 72 ----------------------IVDCILARVGASDSQ---L-----KGVSTFMAEMLETAAILKSATENSLIIIDELGRG 121 (222)
T ss_pred ----------------------ccceeEeeeccccch---h-----cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCC
Confidence 123455566665432 1 36999999999999999 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 226 TSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 226 tsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|++||+...... .++.+.+ .|.++|++||+. ++.++||++..+++|++...+.
T Consensus 122 T~~lD~~~~~~~--il~~l~~~~~~~vlisTH~~--el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 122 TSTYDGFGLAWA--IAEYIATQIKCFCLFATHFH--ELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CChHHHHHHHHH--HHHHHHhcCCCeEEEEechH--HHHHHhhcCCCeEEEEEEEEEe
Confidence 999999888543 3455554 489999999973 5788999999999999987664
No 409
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.73 E-value=9.6e-18 Score=166.45 Aligned_cols=75 Identities=25% Similarity=0.439 Sum_probs=68.0
Q ss_pred CCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 198 GVSGGERRRVSIGIDIIH----KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~----~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
+||+||+||++||++|+. +|+++|+|||++|||+.....+.+.|.++.++|.++|++||+++. ...+|+++.|+
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~--~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPEL--AELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH--HHhhhhEEEEE
Confidence 399999999999999987 789999999999999999999999999987668999999999864 45789999986
Q ss_pred C
Q 003437 274 R 274 (820)
Q Consensus 274 ~ 274 (820)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
No 410
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.71 E-value=5.3e-17 Score=198.18 Aligned_cols=136 Identities=26% Similarity=0.421 Sum_probs=111.0
Q ss_pred CCCCCHHHHHHHHHHhcCCCC---CC---HHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHhcC
Q 003437 144 FPMLTVFETFMFAAEVRLPPS---IS---RDEKKKRVYELLDQLGLRSA-THTYIGNEGRRGVSGGERRRVSIGIDIIHK 216 (820)
Q Consensus 144 ~~~lTV~e~l~~~~~~~~~~~---~~---~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSGGerqRv~ia~aL~~~ 216 (820)
+-.+||.|.+.|.-.+..+.. +. .++..++++ .|+.+||.+. +|+.+. .|||||||||.||++|+.+
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~-----~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchh-----hCCHHHHHHHHHHHHHhhC
Confidence 346899999999554422110 00 013344554 6888999865 677765 6999999999999999999
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE------eCCeEEEEcCccchh
Q 003437 217 P--SLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL------ARGRLVYMGSPVALP 287 (820)
Q Consensus 217 P--~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 287 (820)
| ++++|||||+|||+..+..++++|++++++|.|||+++|+++. +. .||+|++| ++|++++.|+++++.
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~-i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDT-IR-AADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HH-hCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 7 9999999999999999999999999998889999999999874 54 69999999 899999999998764
No 411
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=4.1e-18 Score=183.46 Aligned_cols=212 Identities=24% Similarity=0.313 Sum_probs=150.7
Q ss_pred CCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCE
Q 003437 44 PGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK 123 (820)
Q Consensus 44 ~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~ 123 (820)
+...|.++|.+.+-.+ +.++.+.|++|-.|..++|+||||-||||||+-|+.+-..-|..=.|++-.+
T Consensus 261 na~DIKiEnF~ISA~G------------k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQ 328 (807)
T KOG0066|consen 261 NAMDIKIENFDISAQG------------KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQ 328 (807)
T ss_pred hcccceeeeeeeeccc------------ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeee
Confidence 4456899998887543 3588999999999999999999999999999999987422222223343333
Q ss_pred eCCC-----------ccccceEEEEccCC-----CCCCCCCHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 003437 124 PVTT-----------SYMKMVSSYVMQDD-----QLFPMLTVFETFMFAA-EVRLPPSISRDEKKKRVYELLDQLGLRSA 186 (820)
Q Consensus 124 ~~~~-----------~~~~~~~gyv~Q~~-----~l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 186 (820)
.+.. ... ++...+-..+ .--...|+.|-|.-.+ .+|. +.....+.++..+|.-||.+..
T Consensus 329 Evvad~t~Ai~tvl~aD~-kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskE 404 (807)
T KOG0066|consen 329 EVVADSTSAIDTVLKADK-KRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKE 404 (807)
T ss_pred eeeecCcHHHHHHHHhhH-HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChh
Confidence 3210 000 1111111111 1113456666664332 3331 1222345678889999999765
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhc
Q 003437 187 THTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLL 266 (820)
Q Consensus 187 ~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 266 (820)
.....- ...|||-|-||++||||...|-+|.|||||+.||.....-+-+.|+.+. +|.++++||-.. +...|
T Consensus 405 MQ~rPt----~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQgF-LD~VC 476 (807)
T KOG0066|consen 405 MQERPT----TKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQGF-LDSVC 476 (807)
T ss_pred HhcCCc----cccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccch-HHHHH
Confidence 433322 3699999999999999999999999999999999999999999999885 599999999986 78899
Q ss_pred CEEEEEeCCeEEE
Q 003437 267 DRIIVLARGRLVY 279 (820)
Q Consensus 267 D~v~lL~~G~iv~ 279 (820)
..|+-|++-++.|
T Consensus 477 tdIIHLD~qkLhy 489 (807)
T KOG0066|consen 477 TDIIHLDNQKLHY 489 (807)
T ss_pred HHHhhhhhhhhhh
Confidence 9999999887654
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.70 E-value=7.8e-17 Score=196.35 Aligned_cols=135 Identities=26% Similarity=0.400 Sum_probs=107.2
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCH------HHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHhcCC
Q 003437 145 PMLTVFETFMFAAEVRLPPSISR------DEKKKRVYELLDQLGLRSA-THTYIGNEGRRGVSGGERRRVSIGIDIIHKP 217 (820)
Q Consensus 145 ~~lTV~e~l~~~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P 217 (820)
-.|||.|.+.|...+........ .+..+++ +.|..+||... .++.+ .+|||||+|||.||++|+.+|
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~-----~tLSGGE~QRv~LA~aL~~~~ 506 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAA-----GTLSGGEAQRIRLATQIGSGL 506 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCc-----CcCCHHHHHHHHHHHHHhhCC
Confidence 36899999988876532110000 1112222 23677788654 45555 479999999999999999986
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE------eCCeEEEEcCccchh
Q 003437 218 --SLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL------ARGRLVYMGSPVALP 287 (820)
Q Consensus 218 --~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 287 (820)
+++||||||+|||+.....++++|+++.++|.|||+++|+++. + ..||++++| ++|++++.|+++++.
T Consensus 507 ~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~-i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 507 TGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEET-I-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH-H-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 8999999999999999999999999998889999999999874 5 489999999 899999999988764
No 413
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.70 E-value=2e-17 Score=170.08 Aligned_cols=157 Identities=15% Similarity=0.166 Sum_probs=104.6
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHH
Q 003437 76 HDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMF 155 (820)
Q Consensus 76 ~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~ 155 (820)
-..++++.+|++++|+|||||||||||++|++.... ...|.. +.. .+..++|..| ++..+...++
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~-~~~g~~------~~~--~~~~i~~~dq---i~~~~~~~d~--- 84 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLL-AQIGCF------VPA--ESASIPLVDR---IFTRIGAEDS--- 84 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHH-HHcCCC------ccc--cccccCCcCE---EEEEecCccc---
Confidence 344666668999999999999999999999964310 011211 000 0112233222 1111111111
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q 003437 156 AAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAY 235 (820)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~ 235 (820)
.+..+ ..++++++ |+..+.+++.+|+++|+||||+|||+....
T Consensus 85 -------------------------------i~~~~-----s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~ 127 (202)
T cd03243 85 -------------------------------ISDGR-----STFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGL 127 (202)
T ss_pred -------------------------------ccCCc-----eeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHH
Confidence 11111 23666655 477778889999999999999999999988
Q ss_pred HHHH-HHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccch
Q 003437 236 SVVE-KVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL 286 (820)
Q Consensus 236 ~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 286 (820)
.+.. +++.+.+.+.++|++||+++ +...+|++..+..|++...+...++
T Consensus 128 ~l~~~ll~~l~~~~~~vi~~tH~~~--~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 128 AIAYAVLEHLLEKGCRTLFATHFHE--LADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHHHHHhcCCeEEEECChHH--HHHHhhcCCCeEEEEEEEEecCCee
Confidence 8765 46667777899999999974 5667999999999999988765443
No 414
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=8.5e-16 Score=165.12 Aligned_cols=76 Identities=17% Similarity=0.282 Sum_probs=63.3
Q ss_pred CCCChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhc-
Q 003437 197 RGVSGGERRRVSIGIDII---------HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLL- 266 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~---------~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~- 266 (820)
.-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|+++. .+++++|+... +..+|
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~~~-~~~~~~ 256 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDLAD-FDALWL 256 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCchh-ccchhc
Confidence 358999999999999985 7999999999999999999999999998753 35666665543 55666
Q ss_pred --CEEEEEeCCeE
Q 003437 267 --DRIIVLARGRL 277 (820)
Q Consensus 267 --D~v~lL~~G~i 277 (820)
++++.|++|++
T Consensus 257 ~~~~i~~l~~g~i 269 (270)
T cd03242 257 RRAQIFRVDAGTL 269 (270)
T ss_pred cCccEEEEeCcEE
Confidence 68999999985
No 415
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.64 E-value=3e-16 Score=161.39 Aligned_cols=137 Identities=19% Similarity=0.304 Sum_probs=99.7
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
..+.+|+++++++|++++|+||||+|||||+++|++... +.+...|| +...+.+++.|
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-------------------la~~G~~v---pa~~~~l~~~d 73 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI-------------------MAQIGCFV---PAEYATLPIFN 73 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH-------------------HHHcCCCc---chhhcCccChh
Confidence 458999999999999999999999999999999998641 11111233 23344556666
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDS 231 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~ 231 (820)
+|.. .++..+..+... +.+|+|++|+ ..+.+++.+|+++|+|||++|+|+
T Consensus 74 ~I~~------------------------~~~~~d~~~~~~-----S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~ 123 (204)
T cd03282 74 RLLS------------------------RLSNDDSMERNL-----STFASEMSET-AYILDYADGDSLVLIDELGRGTSS 123 (204)
T ss_pred heeE------------------------ecCCccccchhh-----hHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCH
Confidence 6532 222222222222 3589999965 566778999999999999999999
Q ss_pred HHHHHHH-HHHHHHHhCCcEEEEEEcCccH
Q 003437 232 TSAYSVV-EKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 232 ~~~~~i~-~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
.....+. ..++.+.+.|.++|++||+.+.
T Consensus 124 ~~~~~l~~~il~~l~~~~~~~i~~TH~~~l 153 (204)
T cd03282 124 ADGFAISLAILECLIKKESTVFFATHFRDI 153 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence 8766654 5677777789999999999864
No 416
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.58 E-value=5.6e-15 Score=153.48 Aligned_cols=158 Identities=21% Similarity=0.181 Sum_probs=107.7
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHH
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFET 152 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~ 152 (820)
.+.+|++++.++ ++++|+||||+|||||||+|++.... |. .|..+.. .+..++|+.| +++.+++.|+
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l----~~---~g~~vp~--~~~~i~~~~~---i~~~~~~~~~ 85 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL----AQ---IGSFVPA--SKAEIGVVDR---IFTRIGASDD 85 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH----hc---cCCeecc--ccceecceee---EeccCCchhh
Confidence 489999999987 99999999999999999999875421 11 1222221 1234566654 5667777776
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCC---CCCC
Q 003437 153 FMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEP---TSGL 229 (820)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEP---tsgL 229 (820)
+..+.. . . ..|+++++-+...+.+|+++||||| |++|
T Consensus 86 ls~g~s--------~-------------------------------f-~~e~~~l~~~l~~~~~~~llllDEp~~gt~~l 125 (216)
T cd03284 86 LAGGRS--------T-------------------------------F-MVEMVETANILNNATERSLVLLDEIGRGTSTY 125 (216)
T ss_pred hccCcc--------h-------------------------------H-HHHHHHHHHHHHhCCCCeEEEEecCCCCCChH
Confidence 643210 0 0 1223344444444679999999999 8888
Q ss_pred CHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchh
Q 003437 230 DSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 230 D~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 287 (820)
|.... ...+++.+.+. +.++|++||+. ++.+++|++..+.+|++...+..+++.
T Consensus 126 D~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 126 DGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred HHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 87552 23455555655 89999999996 367789988888889888777666553
No 417
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.56 E-value=1.7e-14 Score=156.14 Aligned_cols=178 Identities=25% Similarity=0.343 Sum_probs=134.8
Q ss_pred ccccceeeeeEEEeCCc-----EEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCC
Q 003437 70 KEAYLLHDISGQAIRGE-----IMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLF 144 (820)
Q Consensus 70 ~~~~iL~~vs~~i~~Ge-----~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~ 144 (820)
+.+.-+.+..+.|+.|+ ++..+|.||.|||||+++|+|++.|+ ..|+|-. -.++|=||...-=
T Consensus 347 ~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd-~~~e~p~-----------lnVSykpqkispK 414 (592)
T KOG0063|consen 347 KMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPD-EGGEIPV-----------LNVSYKPQKISPK 414 (592)
T ss_pred cceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCC-ccCcccc-----------cceeccccccCcc
Confidence 34557788888888774 78999999999999999999988653 2333321 2356667754332
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 003437 145 PMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDE 224 (820)
Q Consensus 145 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDE 224 (820)
..-||++.+.--. + +.-.....+.++++-|.+++..|.-+- +|||||.|||++|.+|=..+++.+.||
T Consensus 415 ~~~tvR~ll~~kI--r-----~ay~~pqF~~dvmkpL~ie~i~dqevq-----~lSggelQRval~KOGGKpAdvYliDE 482 (592)
T KOG0063|consen 415 REGTVRQLLHTKI--R-----DAYMHPQFVNDVMKPLQIENIIDQEVQ-----GLSGGELQRVALALCLGKPADVYLIDE 482 (592)
T ss_pred ccchHHHHHHHHh--H-----hhhcCHHHHHhhhhhhhHHHHHhHHhh-----cCCchhhHHHHHHHhcCCCCceEEecC
Confidence 3348888764321 1 111123567888888888887777664 799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 225 PTSGLDSTSAYSVVEKVKDIA-RTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 225 PtsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
|.+-||++.+...-+.+++.. +.++|-.++.||.-. .-.++||+++.
T Consensus 483 psAylDSeQRi~AskvikRfilhakktafvVEhdfIm-aTYladrvivf 530 (592)
T KOG0063|consen 483 PSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIM-ATYLADRVIVF 530 (592)
T ss_pred chhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHH-HHhhcceeEEE
Confidence 999999999999999998875 568999999999754 33468888654
No 418
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.54 E-value=2.5e-14 Score=152.83 Aligned_cols=140 Identities=21% Similarity=0.238 Sum_probs=96.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRL 161 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~ 161 (820)
.-++|+||||||||||+++|+|.+.+ .+|+|.++|+++... .....+++++|++ +.+.++|.++..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~--~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~------- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST--GISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP------- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC--CCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch-------
Confidence 57899999999999999999999864 579999999998531 2233456788865 334455554311
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 003437 162 PPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKV 241 (820)
Q Consensus 162 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L 241 (820)
+.+ | .....+..+|+++++|||++ ...+..++
T Consensus 182 -----k~~--------------------------------~-----~~~~i~~~~P~villDE~~~------~e~~~~l~ 213 (270)
T TIGR02858 182 -----KAE--------------------------------G-----MMMLIRSMSPDVIVVDEIGR------EEDVEALL 213 (270)
T ss_pred -----HHH--------------------------------H-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHH
Confidence 000 0 12223346999999999974 23344455
Q ss_pred HHHHhCCcEEEEEEcCccHHH------------HhhcCEEEEEeCCeEEEEcCccch
Q 003437 242 KDIARTGSIVLMTIHQPSYRI------------QMLLDRIIVLARGRLVYMGSPVAL 286 (820)
Q Consensus 242 ~~l~~~g~tvi~~~H~~~~~i------------~~~~D~v~lL~~G~iv~~G~~~~~ 286 (820)
+.+ ++|.++|+++|+++.+- ..+|||+++|++|+ ..|+++++
T Consensus 214 ~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 214 EAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 554 46999999999875422 26699999999887 66666654
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.48 E-value=2.3e-14 Score=145.46 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=56.4
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVV-EKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~-~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.+|+|++|...+.. .+.+|+++|+|||++|+|+.....+. .+++.+.++ +.++|++||+++ +.+++|+.--+.++
T Consensus 61 ~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~--l~~~~~~~~~v~~~ 137 (185)
T smart00534 61 TFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE--LTKLADEHPGVRNL 137 (185)
T ss_pred HHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH--HHHHhhcCccceEE
Confidence 58888776433333 34599999999999999999888775 556777764 899999999984 66778753333444
Q ss_pred eE
Q 003437 276 RL 277 (820)
Q Consensus 276 ~i 277 (820)
+.
T Consensus 138 ~~ 139 (185)
T smart00534 138 HM 139 (185)
T ss_pred EE
Confidence 43
No 420
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.45 E-value=8.3e-12 Score=131.32 Aligned_cols=196 Identities=14% Similarity=0.158 Sum_probs=138.5
Q ss_pred hhHHHhhcChHHHHHHHHHHHHHHHHHHHHhccC-CCC-CHHHHH----HHHHHHHHHHHHHHHhhhhcHHHHHHHhh-H
Q 003437 533 RTALNVIRTPELFLSREIVFAVMALILSSLFKNL-SHH-DFKTIN----RLLNFYIFAVCLVFFSSNDAVPTFIQERF-I 605 (820)
Q Consensus 533 R~~~~~~Rdp~~~~~r~~~~i~~~lliG~lf~~l-~~~-~~~~~~----~~~g~~ff~~~~~~~~~~~~i~~f~~eR~-v 605 (820)
|+++..+|||.....-+++-+++.+++|.+|-.. +.. ...+.+ -..|.+.+.++.... ..... ...||. -
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~--~~~~~-~~~~~~~g 77 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSF--FSGIS-VIWDRQFG 77 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHH--HhhhH-HHHHHHhC
Confidence 7788899999999999999999999998887432 110 011111 112322222222111 11222 222332 2
Q ss_pred HHhHhcCCCCChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Q 003437 606 FIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSS-LLNFWMILFASLITTNAYVMLVSALVPSYIAG 684 (820)
Q Consensus 606 f~RE~~~g~Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~-f~~f~l~l~l~~~~~~s~~~~i~a~~ps~~~a 684 (820)
+.++....=.++..|++++.+.+++..++..+++.++.|++.+++.. +..+++.+++..++..+++.++++.+++.+.+
T Consensus 78 ~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~ 157 (236)
T TIGR01247 78 FLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKPSGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGF 157 (236)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 33333333456789999999999999999999999999988776643 33344444455566778999999999998888
Q ss_pred HHHHHHHHHHHHHhccceecCCCCCcceeehhccChhhHHHHHHHHh
Q 003437 685 YAVVIATTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTN 731 (820)
Q Consensus 685 ~~v~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~n 731 (820)
..+......+++.+||.+.|.+.+|.|++|+.|++|++|+.|++-..
T Consensus 158 ~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~ 204 (236)
T TIGR01247 158 QIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYY 204 (236)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHH
Confidence 88888888888999999999999999999999999999999996543
No 421
>PRK00064 recF recombination protein F; Reviewed
Probab=99.44 E-value=1.7e-12 Score=145.10 Aligned_cols=77 Identities=22% Similarity=0.415 Sum_probs=65.7
Q ss_pred CCCChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhc-
Q 003437 197 RGVSGGERRRVSIGIDII---------HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLL- 266 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~---------~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~- 266 (820)
..+|.||+|+++||+.|+ .+|+||+||||+++||+..+..+++.|.++ +..+++++|++.. +...+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~-~~~~~~ 347 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLED-LADLLE 347 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhh-hhhhhc
Confidence 469999999999999886 799999999999999999999999998764 4578999998764 44443
Q ss_pred -CEEEEEeCCeE
Q 003437 267 -DRIIVLARGRL 277 (820)
Q Consensus 267 -D~v~lL~~G~i 277 (820)
++++.+++|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 47899999987
No 422
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.38 E-value=2.6e-12 Score=133.26 Aligned_cols=132 Identities=20% Similarity=0.201 Sum_probs=86.9
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCC-CCCCHHHH
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLF-PMLTVFET 152 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~-~~lTV~e~ 152 (820)
+-+|+++.=..+.+++|.||||+|||||||.|+..... ...|...... .-.++|..|....+ ...++.++
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~--------~~~~~~~d~i~~~l~~~~si~~~ 88 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD--------SATIGLVDKIFTRMSSRESVSSG 88 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC--------CcEEeeeeeeeeeeCCccChhhc
Confidence 44555543222379999999999999999999842100 1235443211 12356666643211 11121111
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC--hHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 003437 153 FMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS--GGERRRVSIGIDIIHKPSLLFLDEPTSGLD 230 (820)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS--GGerqRv~ia~aL~~~P~lLllDEPtsgLD 230 (820)
+| --|.||++++++++.+|+++|+|||++|+|
T Consensus 89 ----------------------------------------------~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd 122 (213)
T cd03281 89 ----------------------------------------------QSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTD 122 (213)
T ss_pred ----------------------------------------------cchHHHHHHHHHHHHHhCCCCcEEEeccccCCCC
Confidence 22 346689999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHhC---CcEEEEEEcCccH
Q 003437 231 STSAYSV-VEKVKDIART---GSIVLMTIHQPSY 260 (820)
Q Consensus 231 ~~~~~~i-~~~L~~l~~~---g~tvi~~~H~~~~ 260 (820)
+.....+ ...|+.+.+. +.++|++||+++.
T Consensus 123 ~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l 156 (213)
T cd03281 123 TEDGAGLLIATIEHLLKRGPECPRVIVSTHFHEL 156 (213)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHH
Confidence 9765555 5688888764 3589999999864
No 423
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.37 E-value=6.4e-13 Score=160.70 Aligned_cols=133 Identities=20% Similarity=0.291 Sum_probs=92.4
Q ss_pred eeeEEEeCC-cEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCC-CCCCCCHHHHHH
Q 003437 77 DISGQAIRG-EIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQ-LFPMLTVFETFM 154 (820)
Q Consensus 77 ~vs~~i~~G-e~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~-l~~~lTV~e~l~ 154 (820)
.+|+.+.++ ++++|.||||+|||||||+|+|.... ...| .+||.... .++ +.+.+.
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~-aq~G------------------~~Vpa~~~~~~~---~~d~i~ 370 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM-FQSG------------------IPIPANEHSEIP---YFEEIF 370 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH-HHhC------------------CCccCCcccccc---chhhee
Confidence 378888877 99999999999999999999986210 1112 13333321 111 111110
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 003437 155 FAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSA 234 (820)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~ 234 (820)
. .+..+ + .+.+ ....+|+|+++++.|++.+ .+|+++|+|||++|+|+...
T Consensus 371 --~------~i~~~---~---si~~---------------~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg 420 (771)
T TIGR01069 371 --A------DIGDE---Q---SIEQ---------------NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEG 420 (771)
T ss_pred --e------ecChH---h---HHhh---------------hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHH
Confidence 0 01110 0 0111 1236999999999998876 89999999999999999999
Q ss_pred HHH-HHHHHHHHhCCcEEEEEEcCccHH
Q 003437 235 YSV-VEKVKDIARTGSIVLMTIHQPSYR 261 (820)
Q Consensus 235 ~~i-~~~L~~l~~~g~tvi~~~H~~~~~ 261 (820)
..+ ..+|+.+.+.|.++|++||+.+..
T Consensus 421 ~ala~aiLe~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 421 SALAISILEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred HHHHHHHHHHHHhcCCEEEEECChHHHH
Confidence 999 567888888899999999998643
No 424
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.37 E-value=2.5e-12 Score=133.77 Aligned_cols=88 Identities=26% Similarity=0.460 Sum_probs=65.5
Q ss_pred HHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 003437 172 KRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDII----HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART 247 (820)
Q Consensus 172 ~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~----~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~ 247 (820)
+.+.+.+...++... .||||||.+++||.-|+ .+.++++||||.++||...+..+.++|+++.+
T Consensus 121 ~~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred ccccccccccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 445666776666432 59999999999997764 46789999999999999999999999999875
Q ss_pred CcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 248 GSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 248 g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
+.=+|++||++. ++..+|+.+.+.
T Consensus 189 ~~Q~ii~Th~~~--~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 QSQFIITTHNPE--MFEDADKLIGVT 212 (220)
T ss_dssp TSEEEEE-S-HH--HHTT-SEEEEEE
T ss_pred cccccccccccc--cccccccccccc
Confidence 366899999975 678899877654
No 425
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.35 E-value=1.9e-12 Score=140.56 Aligned_cols=172 Identities=25% Similarity=0.358 Sum_probs=120.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC---CceEE------EECCEeCCCccccce--------E--EEEccCCCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRIAQGS---LEGSV------RIDGKPVTTSYMKMV--------S--SYVMQDDQL 143 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~---~~G~I------~i~G~~~~~~~~~~~--------~--gyv~Q~~~l 143 (820)
.||++.+++|-||-||||-|++|+|.++|.. +.+-. ++.|-++.. .+.+. + -||.|-+..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~-yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQN-YFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhh-hhhhhccccccCcCChHHHHHHHHH
Confidence 4799999999999999999999999886531 11100 111111100 00000 0 011111111
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEe
Q 003437 144 FPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLD 223 (820)
Q Consensus 144 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllD 223 (820)
.. .+|.++|. ....++..+++++.+.|.+..++-+. .|||||-||.+||++-+.+.++.++|
T Consensus 177 ~k-~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~advyMFD 238 (592)
T KOG0063|consen 177 VK-GTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQKADVYMFD 238 (592)
T ss_pred HH-HHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhhcceeEec
Confidence 10 13333322 12223356778888888888877775 69999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 224 EPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 224 EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
||.+-||...+..-...++.+....+=||++.||.+- +..+.|-+..|..
T Consensus 239 EpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsV-LDylSDFiCcLYG 288 (592)
T KOG0063|consen 239 EPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSV-LDYLSDFICCLYG 288 (592)
T ss_pred CCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechH-HHhhhcceeEEec
Confidence 9999999999999999999999888999999999984 5567888888864
No 426
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.35 E-value=1.2e-12 Score=119.73 Aligned_cols=73 Identities=15% Similarity=0.088 Sum_probs=61.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC---ccccceEEEEccCCCCCCCCCH
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT---SYMKMVSSYVMQDDQLFPMLTV 149 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~~~l~~~lTV 149 (820)
.+|+++++.+++||+++|+||||||||||+++|. +|++.++|.++.. ....+.++|++|+ ++. .|+
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~ti 71 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI--------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IRL 71 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hhH
Confidence 5899999999999999999999999999999986 4899999998753 2345567788887 554 399
Q ss_pred HHHHHHH
Q 003437 150 FETFMFA 156 (820)
Q Consensus 150 ~e~l~~~ 156 (820)
+|||.++
T Consensus 72 ~~Ni~~~ 78 (107)
T cd00820 72 RLNIFLI 78 (107)
T ss_pred Hhhceee
Confidence 9999873
No 427
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.32 E-value=3.2e-11 Score=124.45 Aligned_cols=149 Identities=16% Similarity=0.132 Sum_probs=121.1
Q ss_pred CChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 003437 615 YRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHS-SLLNFWMILFASLITTNAYVMLVSALVPSYIAGYAVVIATTA 693 (820)
Q Consensus 615 Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~-~f~~f~l~l~l~~~~~~s~~~~i~a~~ps~~~a~~v~~~~~~ 693 (820)
-+++.++++|++..++..+++++++..+.|++.|++. ++..+++.+++..++..+++.++++.+++... ++....++
T Consensus 57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~--~~~~~~~~ 134 (208)
T TIGR03062 57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPAHPPATFGFAILTSLTFMAIIQFLVALFGNVGR--FLALVLLV 134 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcchH--HHHHHHHH
Confidence 3456789999999999999999999999999999975 46667777777778888999999999987643 34444455
Q ss_pred HHHHhccceecCCCCCcceeehhccChhhHHHHHHHHhhcCCCccccCCCCCCCCCCCccccccccccccccccCCCccc
Q 003437 694 LFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTNEFKGKECYNGAPGDLSPGPLGEVKLSKLHNTTAALLRPDCTL 773 (820)
Q Consensus 694 ~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~nef~~~~c~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~c~~ 773 (820)
+.++++|.+.|.+.+|.|++|+.|++|++|+.+++-...+.+.
T Consensus 135 ~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~------------------------------------- 177 (208)
T TIGR03062 135 LQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN------------------------------------- 177 (208)
T ss_pred HHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc-------------------------------------
Confidence 6677899999999999999999999999999999977666431
Q ss_pred chHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003437 774 IGEDIVYSMDIQIENIWFDILILLAWGVLYRLFFYLVLRFY 814 (820)
Q Consensus 774 ~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~l~~l~L~~~ 814 (820)
....|.++++|+++.+++.++++...|.+
T Consensus 178 ------------~~~~~~~~~~L~~~~~v~~~la~~~~~~~ 206 (208)
T TIGR03062 178 ------------DGTLWQAVAVLLLILVVFLALSLLSARRK 206 (208)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 12468889999999998888888776643
No 428
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.32 E-value=3.1e-10 Score=119.22 Aligned_cols=187 Identities=13% Similarity=0.097 Sum_probs=120.6
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH-HHHHHHHHHHHHHHhhhhcHHHHHHHh--hHHHhHhcCCCC
Q 003437 539 IRTPELFLSREIVFAVMALILSSLFKNLSHHDFKTINR-LLNFYIFAVCLVFFSSNDAVPTFIQER--FIFIRETSHNAY 615 (820)
Q Consensus 539 ~Rdp~~~~~r~~~~i~~~lliG~lf~~l~~~~~~~~~~-~~g~~ff~~~~~~~~~~~~i~~f~~eR--~vf~RE~~~g~Y 615 (820)
+|||..+..-+.+-+++-++.+.+|=+-... ...+. ..+.+.+.++++.+ ...-.....|| ..+.|=+.. =.
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~er~~G~l~rl~~~-P~ 76 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSVTH--NRGATFIPVLMALAAISTAF--TGQAIAVARDRRYGALKRLGAT-PL 76 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCccCC--cchhHhhHHHHHHHHHHHHH--HHHHHHHHHHHHhCHHHHHhcC-CC
Confidence 6999999999998888877777777441111 11211 22222222221111 11112223333 344443332 24
Q ss_pred ChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCCch--HHHHHHHHHHHHHHHHHHHHHHHHhcc---hHHHHHHHHHH
Q 003437 616 RASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSS--LLNFWMILFASLITTNAYVMLVSALVP---SYIAGYAVVIA 690 (820)
Q Consensus 616 ~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~--f~~f~l~l~l~~~~~~s~~~~i~a~~p---s~~~a~~v~~~ 690 (820)
++..|+++|++..++..++..+++. +++++.|++.. ...+++.+.+..+.+.+++.+++++.+ +.+.+..+...
T Consensus 77 ~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 155 (232)
T TIGR00025 77 PRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGALTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL 155 (232)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 7899999999988888777655554 55677788743 333444444444555667777777664 34444667777
Q ss_pred HHHHHHHhccceecCCCCCcceeehhccChhhHHHHHHHHh
Q 003437 691 TTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTN 731 (820)
Q Consensus 691 ~~~~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~n 731 (820)
..++++++||++.|.+.+|.|++|+.+++|++|+.+++-.-
T Consensus 156 ~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~ 196 (232)
T TIGR00025 156 VWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQA 196 (232)
T ss_pred HHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHH
Confidence 77889999999999999999999999999999999987544
No 429
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.28 E-value=2.5e-11 Score=126.43 Aligned_cols=135 Identities=21% Similarity=0.242 Sum_probs=87.9
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
..+.+|+++.+.+|++++|+||||+|||||+++|++... ....|.....- .. .++|..| ++..+...|
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~-la~~G~~v~a~-~~-------~~~~~~~---i~~~~~~~d 85 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITI-MAQIGSFVPAS-SA-------TLSIFDS---VLTRMGASD 85 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHH-HHhCCCEEEcC-ce-------EEeccce---EEEEecCcc
Confidence 358999999999999999999999999999999999431 12345543321 11 1222221 111111111
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC--hHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS--GGERRRVSIGIDIIHKPSLLFLDEPTSGL 229 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS--GGerqRv~ia~aL~~~P~lLllDEPtsgL 229 (820)
.+. .++| ..|-+|++-...-+.+|+++|+|||.+|.
T Consensus 86 ~~~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT 123 (222)
T cd03287 86 SIQ------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGT 123 (222)
T ss_pred ccc------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCC
Confidence 110 0111 13444555555556789999999999999
Q ss_pred CHHHHHHH-HHHHHHHHhC-CcEEEEEEcCccH
Q 003437 230 DSTSAYSV-VEKVKDIART-GSIVLMTIHQPSY 260 (820)
Q Consensus 230 D~~~~~~i-~~~L~~l~~~-g~tvi~~~H~~~~ 260 (820)
|+.....+ ..+++.+.+. +.++|++||+++.
T Consensus 124 ~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l 156 (222)
T cd03287 124 STHDGIAIAYATLHYLLEEKKCLVLFVTHYPSL 156 (222)
T ss_pred ChhhHHHHHHHHHHHHHhccCCeEEEEcccHHH
Confidence 97777764 5677777775 8899999999864
No 430
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.26 E-value=1e-09 Score=116.94 Aligned_cols=194 Identities=12% Similarity=0.058 Sum_probs=132.7
Q ss_pred HHHHHHhhHHHhhcC-hHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHH-----HHHHHHHHHHHHhhhhcHHHHH
Q 003437 527 VAVLSWRTALNVIRT-PELFLSREIVFAVMALILSSLFKNLSHHDFKTINRLL-----NFYIFAVCLVFFSSNDAVPTFI 600 (820)
Q Consensus 527 ~~~L~~R~~~~~~Rd-p~~~~~r~~~~i~~~lliG~lf~~l~~~~~~~~~~~~-----g~~ff~~~~~~~~~~~~i~~f~ 600 (820)
...+.+|+++..+|+ |..+...+++-++.-+++|.+|-.... +..+. +.. |++.+++++..+ .....
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~-~~~g~-~y~~f~~pg~l~~~~~~~~~--~~~~~--- 79 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVG-SVDGV-SYAAFLAAGMVATSAMTAST--FETIY--- 79 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccCCC-CHHHHHHHHHHHHHHHHHHH--HHHHH---
Confidence 345669999999999 999999999888888888888743211 11111 111 222222222111 11111
Q ss_pred HHhhHHHhHhcCCC--------CChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCCc--hHHHHHHHHHHHHHHHHHH
Q 003437 601 QERFIFIRETSHNA--------YRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHS--SLLNFWMILFASLITTNAY 670 (820)
Q Consensus 601 ~eR~vf~RE~~~g~--------Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~--~f~~f~l~l~l~~~~~~s~ 670 (820)
.++.|||.+|. -++..+.+++++.+.-..++..++...+.+++ |... +...++..+++..++..++
T Consensus 80 ---~~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~-g~~~~~~~l~~~~~~ll~~l~~~~l 155 (253)
T TIGR01291 80 ---ATFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTATL-GYIEWWSLIYILPVIALTGLAFASL 155 (253)
T ss_pred ---HHHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchhhhHHHHHHHHHHHHHHHHHH
Confidence 23334444444 26788999999998777777776655555443 4333 2333334445556666789
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHhccceecCCCCCcceeehhccChhhHHHHHHHHh
Q 003437 671 VMLVSALVPSYIAGYAVVIATTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTN 731 (820)
Q Consensus 671 ~~~i~a~~ps~~~a~~v~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~n 731 (820)
|++++++.++.+....+...++.+++.+||.+.|.+.+|.|++|+.+++|+.|+.|++=..
T Consensus 156 g~~~a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~ 216 (253)
T TIGR01291 156 SMLVAALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPV 216 (253)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHH
Confidence 9999999999988777778888899999999999999999999999999999999996544
No 431
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.25 E-value=1.2e-11 Score=128.15 Aligned_cols=44 Identities=16% Similarity=0.328 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPT-----SGLDSTSAYSVVEKVKDIAR 246 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPt-----sgLD~~~~~~i~~~L~~l~~ 246 (820)
|++++.||++++.+|+++++|||| +|||+.+.+.+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999975
No 432
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.22 E-value=2.2e-11 Score=143.97 Aligned_cols=77 Identities=22% Similarity=0.370 Sum_probs=70.2
Q ss_pred CCCChHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 197 RGVSGGERRRVSIGIDIIHK----PSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~----P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
+.+||||+||++||++++.. |++||+||||+|||+.++..+.+.|+++++ +.+||++||++.. ...||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~~--~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQV--AAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHHH--HHhcCeEEEE
Confidence 46899999999999999985 699999999999999999999999999975 8999999999864 3589999999
Q ss_pred eCCe
Q 003437 273 ARGR 276 (820)
Q Consensus 273 ~~G~ 276 (820)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8874
No 433
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.21 E-value=2.6e-10 Score=129.58 Aligned_cols=174 Identities=20% Similarity=0.215 Sum_probs=113.3
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC---CC--------ccccceEEEEccC
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV---TT--------SYMKMVSSYVMQD 140 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~---~~--------~~~~~~~gyv~Q~ 140 (820)
..+++++ +.+.+|+.++|+|+||+|||||+++|+|...+ ..|.|.+.|+.- .. ..+++.+.+|.+.
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~--~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~ 222 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSA--DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS 222 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCC--CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC
Confidence 4589999 99999999999999999999999999998753 579999965433 21 1245667888765
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHH-HHHhcCCCE
Q 003437 141 DQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIG-IDIIHKPSL 219 (820)
Q Consensus 141 ~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia-~aL~~~P~l 219 (820)
+. ++.+-+.-+. ..-.+.|.+..-|- |.++-- ..|+ |.+-| |++.
T Consensus 223 ~~-----~~~~r~~~~~------------~a~~iAEyfr~~g~----~Vll~~---Dslt-----r~A~A~rEis----- 268 (438)
T PRK07721 223 DQ-----PALMRIKGAY------------TATAIAEYFRDQGL----NVMLMM---DSVT-----RVAMAQREIG----- 268 (438)
T ss_pred CC-----CHHHHHHHHH------------HHHHHHHHHHHCCC----cEEEEE---eChH-----HHHHHHHHHH-----
Confidence 43 2211111100 00012222222231 111110 0111 11111 1111
Q ss_pred EEEeCC--CCCCCHHHHHHHHHHHHHHHh--CCc-----EEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccc
Q 003437 220 LFLDEP--TSGLDSTSAYSVVEKVKDIAR--TGS-----IVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA 285 (820)
Q Consensus 220 LllDEP--tsgLD~~~~~~i~~~L~~l~~--~g~-----tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 285 (820)
+.+.|| |+|+|+.....+.++++++.. +|. ||++.+||.+. .+||++..+.+|+++.+++..+
T Consensus 269 l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 269 LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 123454 679999999999999999974 575 99999999874 6799999999999999997654
No 434
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.21 E-value=3.7e-09 Score=112.53 Aligned_cols=202 Identities=12% Similarity=0.098 Sum_probs=135.7
Q ss_pred HHHHHHHHHhhHHHhhcChHHHHHHHHHHHHHHHHHHHHhccC-CC------CC-H-HHHHHHHHHHHHHHHHHHHhhhh
Q 003437 524 LREVAVLSWRTALNVIRTPELFLSREIVFAVMALILSSLFKNL-SH------HD-F-KTINRLLNFYIFAVCLVFFSSND 594 (820)
Q Consensus 524 ~~Q~~~L~~R~~~~~~Rdp~~~~~r~~~~i~~~lliG~lf~~l-~~------~~-~-~~~~~~~g~~ff~~~~~~~~~~~ 594 (820)
+++++.+++|+++...|||..+..-+++-+++-+++|.+|-.+ +. ++ . -...-..|++.+.+.+.++.
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~--- 77 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQ--- 77 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHH---
Confidence 3688999999999999999999999999999999999988432 10 01 0 01112223333333222221
Q ss_pred cHHHHHHHh--hHHHhHhcCCCCChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCCch---HHHHHHHHHHHHHHHHH
Q 003437 595 AVPTFIQER--FIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSS---LLNFWMILFASLITTNA 669 (820)
Q Consensus 595 ~i~~f~~eR--~vf~RE~~~g~Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~---f~~f~l~l~l~~~~~~s 669 (820)
.......|| ..+.+=+... .++..+.+++++..+-..++..+++.++.++. |.+.. +......+++..++..+
T Consensus 78 ~~~~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~-g~~~~~~~~l~~~~~~~l~~~~~~~ 155 (253)
T TIGR03861 78 SSLSMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAALV-GVQPPVWGYVSVLPALVLVAFMLGA 155 (253)
T ss_pred hhhHhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHH
Confidence 111222232 2333333333 47788999999999888777766655554433 55432 22223334445566678
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHhccceecCCCC---CcceeehhccChhhHHHHHHHH
Q 003437 670 YVMLVSALVPSYIAGYAVVIATTALFFLTCGFFLKRGHI---PPYWRWLHYISAIKYPFEALLT 730 (820)
Q Consensus 670 ~~~~i~a~~ps~~~a~~v~~~~~~~~~lf~Gf~i~~~~i---P~~~~W~~yiSp~~Ya~eal~~ 730 (820)
+|.++++++++.+....+..+++.+++.+||.+.|.+.+ |.|++|+.++||+.|..|++=.
T Consensus 156 lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~ 219 (253)
T TIGR03861 156 LGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRF 219 (253)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHH
Confidence 999999999998777777777777888999999998766 8899999999999999988753
No 435
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.19 E-value=1.6e-11 Score=149.16 Aligned_cols=81 Identities=20% Similarity=0.237 Sum_probs=64.8
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVE-KVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
..+|+|++|++.|++++ .+|+++|+|||++|+|+.....+.. +|..+.+.|.++|++||+++. ....+|+..++ ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el-~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKEL-KALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHH-HHHHhcCCCeE-EE
Confidence 36999999999999988 8999999999999999999988865 677777789999999999764 33345554443 45
Q ss_pred eEEEE
Q 003437 276 RLVYM 280 (820)
Q Consensus 276 ~iv~~ 280 (820)
.+.+.
T Consensus 466 ~~~~d 470 (782)
T PRK00409 466 SVEFD 470 (782)
T ss_pred EEEEe
Confidence 55553
No 436
>PRK10869 recombination and repair protein; Provisional
Probab=99.18 E-value=5.7e-11 Score=139.51 Aligned_cols=77 Identities=21% Similarity=0.383 Sum_probs=69.7
Q ss_pred CCCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 197 RGVSGGERRRVSIGIDIIH----KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~----~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
+.+||||+|||+||++++. +|+++|+|||++|||..++..+.+.|+++++ +.+|||+||+|. +..+||+.+++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 3589999999999999997 5899999999999999999999999999975 699999999996 45789999999
Q ss_pred eCCe
Q 003437 273 ARGR 276 (820)
Q Consensus 273 ~~G~ 276 (820)
.++.
T Consensus 506 ~k~~ 509 (553)
T PRK10869 506 SKET 509 (553)
T ss_pred eccc
Confidence 8753
No 437
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.17 E-value=6.4e-11 Score=149.58 Aligned_cols=80 Identities=23% Similarity=0.316 Sum_probs=74.0
Q ss_pred CCCCCChHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHh
Q 003437 195 GRRGVSGGERRRVSIGIDIIH----------KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQM 264 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~----------~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~ 264 (820)
.++.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+.+.+.|++|++|||++.. ...
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~-~~~ 1025 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEF-RER 1025 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH-HHh
Confidence 456899999999999999985 799999999999999999999999999998889999999999985 788
Q ss_pred hcCEEEEEeCC
Q 003437 265 LLDRIIVLARG 275 (820)
Q Consensus 265 ~~D~v~lL~~G 275 (820)
++|+|.|++.|
T Consensus 1026 ~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1026 IPHRILVKKTN 1036 (1042)
T ss_pred hCCEEEEEECC
Confidence 99999999754
No 438
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.16 E-value=5.3e-11 Score=141.03 Aligned_cols=78 Identities=22% Similarity=0.382 Sum_probs=69.2
Q ss_pred CCCCChHHHHHHHHHHHHh----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHh
Q 003437 196 RRGVSGGERRRVSIGIDII----------HKPSLLFLDEPT-SGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQM 264 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~----------~~P~lLllDEPt-sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~ 264 (820)
+..||||||||++||++|+ .+|++||||||| ++||+.+...+.+.|+++ .|.+||++||++. ...
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~~ 541 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DPQ 541 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--chh
Confidence 3679999999999999987 599999999998 789999999999999998 5899999999975 446
Q ss_pred hcCEEEEEeC-CeE
Q 003437 265 LLDRIIVLAR-GRL 277 (820)
Q Consensus 265 ~~D~v~lL~~-G~i 277 (820)
.||++++|.+ |+.
T Consensus 542 ~~d~~~~l~~~~~~ 555 (562)
T PHA02562 542 KFDRHLKMEKVGRF 555 (562)
T ss_pred hhhcEEEEEEECCe
Confidence 7999999986 543
No 439
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.15 E-value=3.7e-10 Score=118.63 Aligned_cols=135 Identities=19% Similarity=0.215 Sum_probs=84.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHH-HHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHh
Q 003437 81 QAIRGEIMAIMGPSGAGKSTF-LDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEV 159 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTL-l~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~ 159 (820)
-+++|++++|.|+|||||||| ++++++...+ | ..+.|+..+ .|..+.+.....+
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~----g---------------~~~~yi~~e------~~~~~~~~~~~~~ 74 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQN----G---------------YSVSYVSTQ------LTTTEFIKQMMSL 74 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC----C---------------CcEEEEeCC------CCHHHHHHHHHHh
Confidence 478899999999999999999 6898886532 2 112455422 2555555544332
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCC----CH
Q 003437 160 RLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDII----HKPSLLFLDEPTSGL----DS 231 (820)
Q Consensus 160 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~----~~P~lLllDEPtsgL----D~ 231 (820)
. ... ++.... |.-...+.. ..+|+++.++-.+.+.+- .+|+++++||||+++ |+
T Consensus 75 g----~~~-------~~~~~~-~~l~~~~~~------~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~ 136 (230)
T PRK08533 75 G----YDI-------NKKLIS-GKLLYIPVY------PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASE 136 (230)
T ss_pred C----Cch-------HHHhhc-CcEEEEEec------ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcch
Confidence 2 111 111110 100001110 136777655544444332 369999999999999 88
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEEcCc
Q 003437 232 TSAYSVVEKVKDIARTGSIVLMTIHQP 258 (820)
Q Consensus 232 ~~~~~i~~~L~~l~~~g~tvi~~~H~~ 258 (820)
....++++.++.+++.|.|+++++|..
T Consensus 137 ~~~~~l~~~l~~l~~~g~tvi~t~~~~ 163 (230)
T PRK08533 137 VAVNDLMAFFKRISSLNKVIILTANPK 163 (230)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeccc
Confidence 888999999999988888777765543
No 440
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.14 E-value=3.8e-10 Score=131.55 Aligned_cols=137 Identities=24% Similarity=0.376 Sum_probs=103.7
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH------HHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHhcCC
Q 003437 145 PMLTVFETFMFAAEVRLPPSISRDEKKKRVYEL------LDQLGLRSA-THTYIGNEGRRGVSGGERRRVSIGIDIIHKP 217 (820)
Q Consensus 145 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~------l~~lgL~~~-~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P 217 (820)
..|++.|.+.|...+.+.. ....-.+..+.++ |..+||.-. +++. ..+|||||.||+-+|..|=++=
T Consensus 427 ~~msi~~~~~f~~~l~l~~-~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~-----a~TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 427 SEMSIADALEFFENLKLSE-KEKKIAEPILKEIKERLGFLVDVGLGYLTLSRS-----AGTLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred hhccHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHHHHHHHHcCcCccccccc-----CCCcChhHHHHHHHHHHhcccc
Confidence 4678888888887665321 1111112222222 344577643 3333 3479999999999999998763
Q ss_pred -C-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE------eCCeEEEEcCccchhhh
Q 003437 218 -S-LLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL------ARGRLVYMGSPVALPAH 289 (820)
Q Consensus 218 -~-lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~~~ 289 (820)
. +.+||||+-||-+..-.++++.|++|.+.|-|+|++.||++ +...+|+|+-| ..|+|++.|++++++..
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed--ti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~ 578 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED--TIRAADHIIDIGPGAGEHGGEIVAEGTPEELLAN 578 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH--HHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhC
Confidence 3 67999999999999999999999999999999999999986 45679999988 46899999999998754
No 441
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.14 E-value=8e-12 Score=132.17 Aligned_cols=75 Identities=23% Similarity=0.301 Sum_probs=63.0
Q ss_pred CCCChHH--------HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCcEEEEEEcCccHHHHhhcC
Q 003437 197 RGVSGGE--------RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYS-VVEKVKDIARTGSIVLMTIHQPSYRIQMLLD 267 (820)
Q Consensus 197 ~~LSGGe--------rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~-i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 267 (820)
+.+|||+ +||+++|+++..+++|.++ ||+.+|..+... ++ +.++...+.|.|+.+|+... ...+|
T Consensus 128 ~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~--~~~~p 201 (249)
T cd01128 128 KILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAE--RRIFP 201 (249)
T ss_pred CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhh--CCCCC
Confidence 4589999 9999999999999999999 999999655443 54 55555568899999999863 56799
Q ss_pred EEEEEeCCeE
Q 003437 268 RIIVLARGRL 277 (820)
Q Consensus 268 ~v~lL~~G~i 277 (820)
.|.+|+.|++
T Consensus 202 aI~vl~s~sr 211 (249)
T cd01128 202 AIDILKSGTR 211 (249)
T ss_pred eEEEcCCCCc
Confidence 9999999987
No 442
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.14 E-value=7.8e-11 Score=122.41 Aligned_cols=135 Identities=23% Similarity=0.319 Sum_probs=89.6
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
..+-+|+++..++|++++|.||||+|||||++++++..... .. |-.+.... ..++++ +.++..+...|
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la-~~------G~~vpa~~--~~i~~~---~~i~~~~~~~d 84 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMA-QM------GMDVPAKS--MRLSLV---DRIFTRIGARD 84 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHH-Hc------CCccCccc--cEeccc---cEEEEecCccc
Confidence 35899999999999999999999999999999999863110 00 11111100 011111 12222222222
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC--hHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS--GGERRRVSIGIDIIHKPSLLFLDEPTSGL 229 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS--GGerqRv~ia~aL~~~P~lLllDEPtsgL 229 (820)
++.. ++| .-|-+|++-....+.+|+++|+|||.+|+
T Consensus 85 ~~~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt 122 (218)
T cd03286 85 DIMK------------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGT 122 (218)
T ss_pred cccc------------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCC
Confidence 2211 111 13445555555556789999999999999
Q ss_pred CHHHHHHHHHH-HHHHHhC-CcEEEEEEcCccH
Q 003437 230 DSTSAYSVVEK-VKDIART-GSIVLMTIHQPSY 260 (820)
Q Consensus 230 D~~~~~~i~~~-L~~l~~~-g~tvi~~~H~~~~ 260 (820)
|+.....+... ++.+.+. +.++|++||+++.
T Consensus 123 ~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el 155 (218)
T cd03286 123 STHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSL 155 (218)
T ss_pred CchHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 99999999888 7778775 8999999999864
No 443
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.10 E-value=2.1e-10 Score=119.30 Aligned_cols=63 Identities=27% Similarity=0.479 Sum_probs=54.2
Q ss_pred CCCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCcc
Q 003437 197 RGVSGGERRRVSIGIDIIHKP---SLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P---~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 259 (820)
..+|.|+||.+.|+..|...+ .++++|||-++|+|..+..+++.|+++.+.+.-||++||.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 457999999999999988876 899999999999999999999999888776788999999985
No 444
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.08 E-value=1.1e-09 Score=110.70 Aligned_cols=77 Identities=19% Similarity=0.188 Sum_probs=64.3
Q ss_pred CCCChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCcEEEEEEcCccH-------
Q 003437 197 RGVSGGERR------RVSIGIDIIHKPSLLFLDEPTSGLD---STSAYSVVEKVKDIARTGSIVLMTIHQPSY------- 260 (820)
Q Consensus 197 ~~LSGGerq------Rv~ia~aL~~~P~lLllDEPtsgLD---~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~------- 260 (820)
..+|+|++| +.........+|+++++|||++.+| ......+.++++.+++.|.|+|+++|+...
T Consensus 70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~ 149 (187)
T cd01124 70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGG 149 (187)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCc
Confidence 468999998 5555555677999999999999999 888888999999998889999999998753
Q ss_pred -HHHhhcCEEEEEe
Q 003437 261 -RIQMLLDRIIVLA 273 (820)
Q Consensus 261 -~i~~~~D~v~lL~ 273 (820)
.+..+||.++.|+
T Consensus 150 ~~~~~~aD~ii~l~ 163 (187)
T cd01124 150 GDVEYLVDGVIRLR 163 (187)
T ss_pred CceeEeeeEEEEEE
Confidence 1567789998886
No 445
>PRK13695 putative NTPase; Provisional
Probab=99.07 E-value=7.1e-11 Score=118.55 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=63.8
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEP--TSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEP--tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.+||+++-++.+++..+.+|++|++||| +.++| ..+.+.|.++.+.|.++|+++|+.. +...+|++..+.+|
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~~--~~~~~~~i~~~~~~ 151 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRRS--VHPFVQEIKSRPGG 151 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECchh--hHHHHHHHhccCCc
Confidence 5999999999999999999999999995 43444 4456777777677999999999853 55679999999999
Q ss_pred eEEEE
Q 003437 276 RLVYM 280 (820)
Q Consensus 276 ~iv~~ 280 (820)
++++.
T Consensus 152 ~i~~~ 156 (174)
T PRK13695 152 RVYEL 156 (174)
T ss_pred EEEEE
Confidence 98765
No 446
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.01 E-value=8.2e-10 Score=121.08 Aligned_cols=142 Identities=15% Similarity=0.190 Sum_probs=94.6
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe-CCCccccceEEEEccCCC-CCCCCCHHHHHHH
Q 003437 78 ISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP-VTTSYMKMVSSYVMQDDQ-LFPMLTVFETFMF 155 (820)
Q Consensus 78 vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~-~~~~~~~~~~gyv~Q~~~-l~~~lTV~e~l~~ 155 (820)
+++.++.|+.++|.||+|||||||+++|++.+++ ..|.+.++... +.. ..+..+.++.+... -..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~--~~~iv~ied~~El~~-~~~~~~~l~~~~~~~~~~---------- 203 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPK--DERIITIEDTREIFL-PHPNYVHLFYSKGGQGLA---------- 203 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCc--cccEEEEcCccccCC-CCCCEEEEEecCCCCCcC----------
Confidence 5577889999999999999999999999998853 45777775311 100 01112222211100 000
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q 003437 156 AAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAY 235 (820)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~ 235 (820)
.++- .-.+..+|-.+|+++++|||.+ .
T Consensus 204 ------------------------------------------~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~ 230 (308)
T TIGR02788 204 ------------------------------------------KVTP----KDLLQSCLRMRPDRIILGELRG-------D 230 (308)
T ss_pred ------------------------------------------ccCH----HHHHHHHhcCCCCeEEEeccCC-------H
Confidence 0111 1234556778999999999996 4
Q ss_pred HHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchh
Q 003437 236 SVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 236 ~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 287 (820)
+++++|+.+...+.+++.|+|..+ .....||+..|..|++...|.+.+..
T Consensus 231 e~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 231 EAFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 566777777643446799999987 35568999999999888888776554
No 447
>PRK15066 inner membrane transport permease; Provisional
Probab=99.00 E-value=1.4e-07 Score=100.73 Aligned_cols=241 Identities=12% Similarity=0.153 Sum_probs=146.1
Q ss_pred HHHHHHHHHHhhHHHhhcChHH-HHHHHHHHHHHHHHHHHHhcc-CCC-CCHHH-HHHHHHHHHHHHHHHHHhhhhcHHH
Q 003437 523 WLREVAVLSWRTALNVIRTPEL-FLSREIVFAVMALILSSLFKN-LSH-HDFKT-INRLLNFYIFAVCLVFFSSNDAVPT 598 (820)
Q Consensus 523 ~~~Q~~~L~~R~~~~~~Rdp~~-~~~r~~~~i~~~lliG~lf~~-l~~-~~~~~-~~~~~g~~ff~~~~~~~~~~~~i~~ 598 (820)
+|+-++.+.+|+++...||+.. +..-+++.++..+++|.++-. .+. .+.+- ..-..|++.+..+... .+.....
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~--~~~~~~~ 83 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNS--YSNVASS 83 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 4678889999999999999854 444455666677777776532 111 11111 1111132222211111 1112222
Q ss_pred HHHHhhH-HHhHhcCCCCChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCCch-HHHHHHHHHHHHHHHHHHHHHHHH
Q 003437 599 FIQERFI-FIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSS-LLNFWMILFASLITTNAYVMLVSA 676 (820)
Q Consensus 599 f~~eR~v-f~RE~~~g~Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~-f~~f~l~l~l~~~~~~s~~~~i~a 676 (820)
+..+|.. ..++-..---++..+.+++++...-..++..++..++.+...|.... ...++..+++..++....+.++++
T Consensus 84 i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~~~~~~l~~~ll~~~~f~~~gl~~a~ 163 (257)
T PRK15066 84 FFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVHHWGIVLLTVLLTAILFSLGGLINAV 163 (257)
T ss_pred HHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333311 01111222357788999999987766666666555555554466543 222222222222323344778888
Q ss_pred hcchHHHHHHHHHHHHHHHHHhccceecCCCCCcceeehhccChhhHHHHHHHHhhcCCCccccCCCCCCCCCCCccccc
Q 003437 677 LVPSYIAGYAVVIATTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTNEFKGKECYNGAPGDLSPGPLGEVKL 756 (820)
Q Consensus 677 ~~ps~~~a~~v~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~nef~~~~c~~~~~~~~~p~p~~~~~~ 756 (820)
+.++......+...++.+++..||.+.|.+++|.|++|+.++||+.|..|++=..-+++
T Consensus 164 ~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g~--------------------- 222 (257)
T PRK15066 164 FAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLGI--------------------- 222 (257)
T ss_pred HHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcCC---------------------
Confidence 88887776777777888889999999999999999999999999999999875332211
Q ss_pred cccccccccccCCCcccchHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003437 757 SKLHNTTAALLRPDCTLIGEDIVYSMDIQIENIWFDILILLAWGVLYRLFFYLVLRFY 814 (820)
Q Consensus 757 ~~~~~~~~~~~~~~c~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~l~~l~L~~~ 814 (820)
.....|.++++++++.+++.+++....|..
T Consensus 223 ----------------------------~~~~~~~~l~~l~~~~~v~~~la~~~~~r~ 252 (257)
T PRK15066 223 ----------------------------SDVPLWLAFAVLLVFIVVLYLLAWYLLERG 252 (257)
T ss_pred ----------------------------CCccHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 011357788899999888877777766543
No 448
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.98 E-value=1.3e-09 Score=137.39 Aligned_cols=80 Identities=24% Similarity=0.308 Sum_probs=70.9
Q ss_pred CCCCCCChHHHHHHHHHHHHhc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhh
Q 003437 194 EGRRGVSGGERRRVSIGIDIIH--------KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQML 265 (820)
Q Consensus 194 ~~~~~LSGGerqRv~ia~aL~~--------~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 265 (820)
..+++|||||++|++||++|+. +|++||+||||++||+.+...+++.|..+.+.|+||++|||.... ..++
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l-~~~i 1023 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAM-KERI 1023 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHH-HHhc
Confidence 3456899999999999999995 899999999999999999999999999999889999999998764 5666
Q ss_pred cCEEEEEeC
Q 003437 266 LDRIIVLAR 274 (820)
Q Consensus 266 ~D~v~lL~~ 274 (820)
..+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 677777764
No 449
>PRK03918 chromosome segregation protein; Provisional
Probab=98.98 E-value=1e-09 Score=136.99 Aligned_cols=78 Identities=27% Similarity=0.356 Sum_probs=68.8
Q ss_pred CCCCCChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCE
Q 003437 195 GRRGVSGGERR------RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDR 268 (820)
Q Consensus 195 ~~~~LSGGerq------Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 268 (820)
.+..|||||++ |++||++++.+|+++|+||||++||+..+..+.++|..++..+.+||++||++. +...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~--~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE--LKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH--HHHhCCe
Confidence 35679999999 555666788999999999999999999999999999998877889999999985 5678999
Q ss_pred EEEEeC
Q 003437 269 IIVLAR 274 (820)
Q Consensus 269 v~lL~~ 274 (820)
+++|..
T Consensus 863 ~~~l~~ 868 (880)
T PRK03918 863 VIRVSL 868 (880)
T ss_pred EEEEEe
Confidence 999984
No 450
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.97 E-value=6.8e-09 Score=127.56 Aligned_cols=69 Identities=22% Similarity=0.176 Sum_probs=60.9
Q ss_pred hcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHH--------HhhcCEEEEEeCCeEEEEcC
Q 003437 214 IHKPSLLFLDEPTSGL-DSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRI--------QMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 214 ~~~P~lLllDEPtsgL-D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i--------~~~~D~v~lL~~G~iv~~G~ 282 (820)
..+|+++++|||+.+| |+..+..+.+.++.+.+.|.++|++||+++... .+.||..++|.+|++...|.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 5799999999999999 799999999999999988999999999997532 25799999999999876664
No 451
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.94 E-value=2.8e-09 Score=104.06 Aligned_cols=62 Identities=19% Similarity=0.194 Sum_probs=48.3
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccH
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTS----------GLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPts----------gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
.+.++.+++..+.+...+|+++++||+++ ++|......+.+++....+.+.|+|+++|.+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 45666678888999999999999999994 455555666666666655569999999998864
No 452
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.89 E-value=5.5e-09 Score=118.03 Aligned_cols=156 Identities=21% Similarity=0.176 Sum_probs=108.3
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
.++++++ +.+.+|+.++|+|+||+|||||+++|+|... ++.|.|.+.|+. . .+|.|
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~--~~~gvI~~iGer----------------g-----~ev~e 199 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK--ADINVISLVGER----------------G-----REVKD 199 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC--CCeEEEEeCCCC----------------c-----ccHHH
Confidence 3578885 9999999999999999999999999999764 345665554432 1 35666
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHh-------cCCCEEEEeC
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDII-------HKPSLLFLDE 224 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~-------~~P~lLllDE 224 (820)
.+.... ..-|+.+. ..+ ....+-|.|+|+|++.+.+.+ .++-+|++|+
T Consensus 200 ~~~~~l---------------------~~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDs 254 (432)
T PRK06793 200 FIRKEL---------------------GEEGMRKS--VVV--VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDS 254 (432)
T ss_pred HHHHHh---------------------hhccccee--EEE--EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 543211 11122211 011 123468999999999998887 7899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 225 PTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 225 PtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
||+..|+. .++-..+.+....|.+..+.+|.+. + ++|.-....|.|...++.
T Consensus 255 lTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~--L---~ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 255 VTRFADAR--RSVDIAVKELPIGGKTLLMESYMKK--L---LERSGKTQKGSITGIYTV 306 (432)
T ss_pred hHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchh--H---HHHhccCCCcceEEEEEE
Confidence 99999996 5555566666545888888888532 3 344444578888776654
No 453
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.87 E-value=2.7e-08 Score=98.35 Aligned_cols=63 Identities=21% Similarity=0.409 Sum_probs=52.6
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccH
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
...|-||-=---+.+. .++--+.|||||-++|.+.-+.+++..|+.+++.|.-+|+.||.|-.
T Consensus 128 h~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiL 190 (233)
T COG3910 128 HHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPIL 190 (233)
T ss_pred hhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhh
Confidence 4578998644333333 46778999999999999999999999999999999999999999853
No 454
>PRK01156 chromosome segregation protein; Provisional
Probab=98.86 E-value=6.7e-09 Score=129.83 Aligned_cols=77 Identities=25% Similarity=0.326 Sum_probs=66.8
Q ss_pred CCCCCChHHHHHHHH------HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hC-C-cEEEEEEcCccHHHHhh
Q 003437 195 GRRGVSGGERRRVSI------GIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA-RT-G-SIVLMTIHQPSYRIQML 265 (820)
Q Consensus 195 ~~~~LSGGerqRv~i------a~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~-~~-g-~tvi~~~H~~~~~i~~~ 265 (820)
.+..||||||+|++| |++++.+|++++|||||++||+.....+.++|+... .. | .+||++||++.. ...
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~--~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHREL--LSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHH--HHh
Confidence 356899999999975 589999999999999999999999999999998654 33 3 489999999864 468
Q ss_pred cCEEEEEe
Q 003437 266 LDRIIVLA 273 (820)
Q Consensus 266 ~D~v~lL~ 273 (820)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999998
No 455
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.80 E-value=7.2e-09 Score=133.77 Aligned_cols=69 Identities=22% Similarity=0.393 Sum_probs=62.0
Q ss_pred CCCChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCcEEEEEEcCccHHHHhh
Q 003437 197 RGVSGGERR------RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-----TGSIVLMTIHQPSYRIQML 265 (820)
Q Consensus 197 ~~LSGGerq------Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tvi~~~H~~~~~i~~~ 265 (820)
..||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|..+.. .|.+||++||++.. +..+
T Consensus 1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~-~~~~ 1276 (1311)
T TIGR00606 1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDF-VELL 1276 (1311)
T ss_pred CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHH-HHHH
Confidence 469999999 99999999999999999999999999999999999988742 37899999999975 6665
Q ss_pred c
Q 003437 266 L 266 (820)
Q Consensus 266 ~ 266 (820)
|
T Consensus 1277 ~ 1277 (1311)
T TIGR00606 1277 G 1277 (1311)
T ss_pred h
Confidence 4
No 456
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.79 E-value=7.4e-07 Score=94.89 Aligned_cols=167 Identities=23% Similarity=0.284 Sum_probs=119.7
Q ss_pred HhhHHHhHhcCCCCChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccC--CCchHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Q 003437 602 ERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLK--LHSSLLNFWMILFASLITTNAYVMLVS-ALV 678 (820)
Q Consensus 602 eR~vf~RE~~~g~Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~G--l~~~f~~f~l~l~l~~~~~~s~~~~i~-a~~ 678 (820)
++..+.|=..+-..+ ..+++++.+...-...+...+...++.+..| ...++..+...+.+..+...+++.+++ ...
T Consensus 116 ~~g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 194 (286)
T COG0842 116 EFGTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGSLLLLLLLLLLLLLATVALGLLLSTFAK 194 (286)
T ss_pred hhCcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444443 5566666666666665555555555666666 334555555555666666677777666 366
Q ss_pred chHHHHHHHHHHHHHHHHHhccceecCCCCCcceeehhccChhhHHHHHHHHhhcCCCccccCCCCCCCCCCCccccccc
Q 003437 679 PSYIAGYAVVIATTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTNEFKGKECYNGAPGDLSPGPLGEVKLSK 758 (820)
Q Consensus 679 ps~~~a~~v~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~nef~~~~c~~~~~~~~~p~p~~~~~~~~ 758 (820)
.+.+.+.++......++..++|.+.|.+.+|.|++|+.+++|..|+.+++-.....+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~--------------------- 253 (286)
T COG0842 195 SQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWR--------------------- 253 (286)
T ss_pred hHHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCc---------------------
Confidence 66777777887888889999999999999999999999999999999998776665420
Q ss_pred cccccccccCCCcccchHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 003437 759 LHNTTAALLRPDCTLIGEDIVYSMDIQIENIWFDILILLAWGVLYRLFFYLVLRFYSKN 817 (820)
Q Consensus 759 ~~~~~~~~~~~~c~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~l~~l~L~~~~~~ 817 (820)
....|.++++++++.+++.+++.+.++...+.
T Consensus 254 ---------------------------~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 254 ---------------------------NDGIWISLLILLLFAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred ---------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 01278899999999999999999888877654
No 457
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.77 E-value=7.1e-08 Score=101.54 Aligned_cols=161 Identities=19% Similarity=0.255 Sum_probs=96.0
Q ss_pred ceeee-eEEEeCCcEEEEEcCCCCcHHHHHHHHH-cCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 74 LLHDI-SGQAIRGEIMAIMGPSGAGKSTFLDALA-GRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 74 iL~~v-s~~i~~Ge~~allGpnGsGKSTLl~~L~-G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
-|+.+ .+=+++|.++.|.|++|+|||||...++ +.... | +.+.|+..+. +..+
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~----g---------------~~~~y~~~e~------~~~~ 67 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ----G---------------KKVYVITTEN------TSKS 67 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC----C---------------CEEEEEEcCC------CHHH
Confidence 45554 5678999999999999999999998875 21110 1 2234554321 3333
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhc--CCCEEEEeCCCCC-
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIH--KPSLLFLDEPTSG- 228 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~--~P~lLllDEPtsg- 228 (820)
.+.-...+ +++.. +.+. .|.....+..+. .....|.++++.+.....++. +|+++++||||+.
T Consensus 68 ~~~~~~~~----g~~~~-------~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 68 YLKQMESV----KIDIS-------DFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred HHHHHHHC----CCChh-------HHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 22211111 11110 0000 011111111111 012356788999999999997 9999999999964
Q ss_pred --CCHHHHHHHHHHHHHHHhCCcEEEEEEcCccH------HHHhhcCEEEEEe
Q 003437 229 --LDSTSAYSVVEKVKDIARTGSIVLMTIHQPSY------RIQMLLDRIIVLA 273 (820)
Q Consensus 229 --LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~------~i~~~~D~v~lL~ 273 (820)
+|......+++.++.+++.|.|+++++|+... .+..++|-++.|+
T Consensus 134 ~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 134 TYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred hcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence 55555566666677777789999999998753 1344566666665
No 458
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.76 E-value=9.3e-09 Score=131.87 Aligned_cols=76 Identities=16% Similarity=0.274 Sum_probs=66.8
Q ss_pred CCCCCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEE
Q 003437 195 GRRGVSGGERRRVSIGIDII----HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRII 270 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~----~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 270 (820)
.+..||||||+|++||++++ .+|+++||||||++||+.+...+.++|+.+++ +.++|++||++.. ...||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~--~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGT--MEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhH--HHHhhhHe
Confidence 45689999999999999984 67799999999999999999999999999875 4789999999874 46799987
Q ss_pred EEe
Q 003437 271 VLA 273 (820)
Q Consensus 271 lL~ 273 (820)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 654
No 459
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.75 E-value=3.7e-08 Score=101.15 Aligned_cols=56 Identities=25% Similarity=0.404 Sum_probs=42.4
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 208 SIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 208 ~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
+|+++|..+|+++++|||. |......++ +.+..|..++.++|.++. ....||++.|
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~~--~~~~~Rl~~l 121 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNSA--AKTIDRIIDV 121 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCcH--HHHHhHHHhh
Confidence 4778899999999999996 665433333 345679999999999874 3567887666
No 460
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.72 E-value=9e-08 Score=101.15 Aligned_cols=136 Identities=27% Similarity=0.415 Sum_probs=87.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECC-EeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDG-KPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPP 163 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G-~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~ 163 (820)
|.+..|+||+|+|||||+-.++=-.. +|.=.+.+ .... ....+-|+.=++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va----~G~~~~g~~~~~~---~~~~Vlyi~~Ed---------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA----LGKNLFGGGLKVT---EPGRVVYLSAED---------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh----cCccccCCccccC---CCceEEEEECCC----------------------
Confidence 67889999999999999977763221 12211111 1111 122344443221
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHH----------------HHhcCCCEEEEeCCCC
Q 003437 164 SISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGI----------------DIIHKPSLLFLDEPTS 227 (820)
Q Consensus 164 ~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~----------------aL~~~P~lLllDEPts 227 (820)
+.++..+|+..+...+++.+..+... +.+|+.|++.+++ ....+|+++++| |++
T Consensus 52 --~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~ 121 (239)
T cd01125 52 --PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLV 121 (239)
T ss_pred --CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChH
Confidence 23344566777777776655444332 2245555555443 335799999999 775
Q ss_pred ------CCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCcc
Q 003437 228 ------GLDSTSAYSVVEKVKDIART-GSIVLMTIHQPS 259 (820)
Q Consensus 228 ------gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~ 259 (820)
.+|+.....+++.|++++++ |.+||+++|...
T Consensus 122 ~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 122 SFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 47999999999999999864 999999999874
No 461
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.71 E-value=4.7e-08 Score=112.02 Aligned_cols=152 Identities=22% Similarity=0.259 Sum_probs=97.1
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHH
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFET 152 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~ 152 (820)
.++++.+..+..|++++++||||+||||++..|++.+.. ..|. +.+++|.+|. ...++.|+
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~--~~G~--------------~kV~LI~~Dt---~RigA~EQ 304 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVM--RHGA--------------SKVALLTTDS---YRIGGHEQ 304 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHH--hcCC--------------CeEEEEeCCc---cchhHHHH
Confidence 356677777889999999999999999999999997531 1221 2467888876 34689999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH-HHHHHHHHhcCC-----CEEEEeCCC
Q 003437 153 FMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR-RVSIGIDIIHKP-----SLLFLDEPT 226 (820)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq-Rv~ia~aL~~~P-----~lLllDEPt 226 (820)
|.+.++... ++........+..+...+|.+....+|.. ...+++. .+.-..+++.++ .+|+||.++
T Consensus 305 Lr~~AeilG---Vpv~~~~~~~Dl~~aL~~L~d~d~VLIDT-----aGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~ 376 (484)
T PRK06995 305 LRIYGKILG---VPVHAVKDAADLRLALSELRNKHIVLIDT-----IGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATS 376 (484)
T ss_pred HHHHHHHhC---CCeeccCCchhHHHHHHhccCCCeEEeCC-----CCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCC
Confidence 999887642 22222222334455666777766666643 2222322 234444455554 689999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 003437 227 SGLDSTSAYSVVEKVKDIARTGSIVLMTIHQ 257 (820)
Q Consensus 227 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~ 257 (820)
.+ ..+.+.++.....+.+-++.|+-
T Consensus 377 ~~------~~l~~i~~~f~~~~~~g~IlTKl 401 (484)
T PRK06995 377 HG------DTLNEVVQAYRGPGLAGCILTKL 401 (484)
T ss_pred cH------HHHHHHHHHhccCCCCEEEEeCC
Confidence 88 33455555555555655555553
No 462
>PRK02224 chromosome segregation protein; Provisional
Probab=98.66 E-value=4.4e-08 Score=122.36 Aligned_cols=78 Identities=29% Similarity=0.429 Sum_probs=67.4
Q ss_pred CCCCChHHHH------HHHHHHHHhcC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEEEcCccHHH
Q 003437 196 RRGVSGGERR------RVSIGIDIIHK-----P-SLLFLDEPTSGLDSTSAYSVVEKVKDIARTGS-IVLMTIHQPSYRI 262 (820)
Q Consensus 196 ~~~LSGGerq------Rv~ia~aL~~~-----P-~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~-tvi~~~H~~~~~i 262 (820)
+..||||||+ |++|+++++.+ | +++|+||||++||+.....++++|+.+...|. +||++||++.. +
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~-~ 857 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDEL-V 857 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHH-H
Confidence 4689999999 89999998864 3 67999999999999999999999999986664 79999999874 3
Q ss_pred HhhcCEEEEEeCC
Q 003437 263 QMLLDRIIVLARG 275 (820)
Q Consensus 263 ~~~~D~v~lL~~G 275 (820)
..||+++.|...
T Consensus 858 -~~ad~~~~~~~~ 869 (880)
T PRK02224 858 -GAADDLVRVEKD 869 (880)
T ss_pred -HhcCeeEEeecC
Confidence 579999999643
No 463
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.65 E-value=4e-08 Score=126.19 Aligned_cols=76 Identities=17% Similarity=0.210 Sum_probs=67.5
Q ss_pred CCCCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEE
Q 003437 196 RRGVSGGERRRVSIGIDIIH----KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIV 271 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~----~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 271 (820)
+..||||||++++||++|+. +|+++|||||+++||+.....+.++|+++++ +..+|++||++. +...||+++.
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~~ 1148 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAIG 1148 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeEe
Confidence 45899999999999999985 7799999999999999999999999999865 478999999985 4578999987
Q ss_pred EeC
Q 003437 272 LAR 274 (820)
Q Consensus 272 L~~ 274 (820)
+..
T Consensus 1149 ~~~ 1151 (1164)
T TIGR02169 1149 VTM 1151 (1164)
T ss_pred EEE
Confidence 753
No 464
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.64 E-value=9.2e-07 Score=83.00 Aligned_cols=60 Identities=27% Similarity=0.280 Sum_probs=47.1
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH------HHHHHHhCCcEEEEEEcC
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVE------KVKDIARTGSIVLMTIHQ 257 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~------~L~~l~~~g~tvi~~~H~ 257 (820)
...+++..+..+.++--.+|.++++||+..-.+......... ........+..+|+++|.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 60 SGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 477788888888888888899999999999999998887765 223333457888888883
No 465
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.64 E-value=2.3e-08 Score=112.86 Aligned_cols=52 Identities=21% Similarity=0.310 Sum_probs=45.0
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCce-EEEECCEeCCC
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEG-SVRIDGKPVTT 127 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G-~I~i~G~~~~~ 127 (820)
..+|++||+++++||+++|+|||||||||||+ +|+..+ ++| +|.++|.++..
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~--~sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKF--SEGYEFFLDATHSFS 71 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCC--CCCCEEEECCEECCC
Confidence 35899999999999999999999999999999 666543 456 89999998854
No 466
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.48 E-value=2.1e-06 Score=84.45 Aligned_cols=128 Identities=15% Similarity=-0.036 Sum_probs=89.2
Q ss_pred HHHHhhHHHhHhcCCCCChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCCch--HHHHHHHH---HHHHHHHHHHHHH
Q 003437 599 FIQERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSS--LLNFWMIL---FASLITTNAYVML 673 (820)
Q Consensus 599 f~~eR~vf~RE~~~g~Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~--f~~f~l~l---~l~~~~~~s~~~~ 673 (820)
.-.|+.++.|-+..-. +++.|+++|++...-..+++.++..++.+++ |++.. +...++++ .+..+....++..
T Consensus 14 ~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~~-g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~ 91 (152)
T TIGR01248 14 IDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALAL-GFRFRNGVAAALLFLLIPSIFGIAFAALVMA 91 (152)
T ss_pred HHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777666555 6899999999999999999988877777644 87744 22222222 2222233344455
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHhccceecCCCCCcceeehhccChhhHHHHHHH
Q 003437 674 VSALVPSYIAGYAVVIATTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALL 729 (820)
Q Consensus 674 i~a~~ps~~~a~~v~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~ 729 (820)
++...++.+. ......+++++++.+|.+.|.+++|.|++|+-+++|+.|+.+++=
T Consensus 92 ~a~~~~~~~~-~~~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 92 MALRKEGRFA-MEALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHHHcCCHHH-HHHHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 5544555443 333455667778888999999999999999999999999999873
No 467
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.45 E-value=1.3e-06 Score=108.10 Aligned_cols=52 Identities=23% Similarity=0.266 Sum_probs=48.3
Q ss_pred HHHHHhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEEcCccH
Q 003437 209 IGIDIIHKPSLLFLDEPTSGL-DSTSAYSVVEKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 209 ia~aL~~~P~lLllDEPtsgL-D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d 732 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD 732 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 577788999999999999999 7999999999999999889999999999985
No 468
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.42 E-value=1.1e-07 Score=110.65 Aligned_cols=167 Identities=17% Similarity=0.185 Sum_probs=99.4
Q ss_pred ceeee-eEEEeCCcEEEEEcCCCCcHHHHHHHH--HcCCCCCCCceEEEECCEeCCCcc--ccceEEEEccCCCCCCCCC
Q 003437 74 LLHDI-SGQAIRGEIMAIMGPSGAGKSTFLDAL--AGRIAQGSLEGSVRIDGKPVTTSY--MKMVSSYVMQDDQLFPMLT 148 (820)
Q Consensus 74 iL~~v-s~~i~~Ge~~allGpnGsGKSTLl~~L--~G~~~~~~~~G~I~i~G~~~~~~~--~~~~~gyv~Q~~~l~~~lT 148 (820)
-|+.+ .+=+.+|..+.|.|++|||||||..-. .|....+ +.-+++...+-.... ..+..|+-.++..--.
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g--e~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g--- 83 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD--EPGVFVTFEESPQDIIKNARSFGWDLQKLVDEG--- 83 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC--CCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcC---
Confidence 46665 567899999999999999999998765 3543211 244555443211110 0111233222110000
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHH--HHHhcCCCEEEEeCCC
Q 003437 149 VFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIG--IDIIHKPSLLFLDEPT 226 (820)
Q Consensus 149 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia--~aL~~~P~lLllDEPt 226 (820)
++.+ + ..... .....+++.+++.+..+.... .+|+|++|||.|+ .+|...|+..
T Consensus 84 ---~l~~---~----~~~~~---~~~~~~~~~~~l~~~l~~i~~-----~ls~g~~qRVvIDSl~aL~~~~~~~------ 139 (484)
T TIGR02655 84 ---KLFI---L----DASPD---PEGQDVVGGFDLSALIERINY-----AIRKYKAKRVSIDSVTAVFQQYDAV------ 139 (484)
T ss_pred ---ceEE---E----ecCch---hccccccccCCHHHHHHHHHH-----HHHHhCCcEEEEeehhHhhhhcCch------
Confidence 0000 0 00000 001123445555555555543 5999999999999 6666665543
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHH--------HHhhcCEEEEEe
Q 003437 227 SGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYR--------IQMLLDRIIVLA 273 (820)
Q Consensus 227 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~--------i~~~~D~v~lL~ 273 (820)
...+..+.++++.+++.|.|+|+++|++... ...++|.|+.|+
T Consensus 140 ----~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 ----SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred ----HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677889999999988899999999987521 145789999887
No 469
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.41 E-value=3.7e-07 Score=102.35 Aligned_cols=60 Identities=22% Similarity=0.321 Sum_probs=55.5
Q ss_pred CCChHHHHHHHHHHHHhc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccH
Q 003437 198 GVSGGERRRVSIGIDIIH---------KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~---------~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
.+|.||+|++.||..|+. +|+|||||||+++||+..+..+++.|++. |..|++|+|++..
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~~ 343 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLDH 343 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChhh
Confidence 589999999999999999 99999999999999999999999999764 6799999998753
No 470
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.41 E-value=6.9e-07 Score=90.77 Aligned_cols=83 Identities=18% Similarity=0.080 Sum_probs=59.3
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCC--CCCCCCCHHH
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDD--QLFPMLTVFE 151 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~--~l~~~lTV~e 151 (820)
..+=+.+.+++|+.++|+||||||||||+++|+|+++ +..|.|.+.+..-.....+..++++.|.+ ...+..++.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~--~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP--PDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHH
Confidence 3444556788999999999999999999999999885 45799999875322222234456666543 3456678888
Q ss_pred HHHHHHH
Q 003437 152 TFMFAAE 158 (820)
Q Consensus 152 ~l~~~~~ 158 (820)
.+....+
T Consensus 92 ~l~~~lR 98 (186)
T cd01130 92 LLRSALR 98 (186)
T ss_pred HHHHHhc
Confidence 7766544
No 471
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.39 E-value=2.9e-07 Score=104.23 Aligned_cols=88 Identities=18% Similarity=0.194 Sum_probs=68.8
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-CceEEEECCEeCCC---------ccccceEEEEccCC
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGS-LEGSVRIDGKPVTT---------SYMKMVSSYVMQDD 141 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~-~~G~I~i~G~~~~~---------~~~~~~~gyv~Q~~ 141 (820)
..+|+++ +.+.+||+++|+|+||+|||||+++|+|...+.. .-|.|-.+|.++.. ...+..++|++|+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 5699999 9999999999999999999999999999875431 12455555554432 11244689999999
Q ss_pred CCCCCCCHHHHHHHHHHhc
Q 003437 142 QLFPMLTVFETFMFAAEVR 160 (820)
Q Consensus 142 ~l~~~lTV~e~l~~~~~~~ 160 (820)
..+..+++.+++.+.++..
T Consensus 222 s~~~rl~a~e~a~~iAEyf 240 (434)
T PRK07196 222 SPLMRIKATELCHAIATYY 240 (434)
T ss_pred ChhhhHHHHHHHHHHHHHh
Confidence 9999999999998877654
No 472
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.38 E-value=1.1e-06 Score=97.82 Aligned_cols=56 Identities=23% Similarity=0.379 Sum_probs=43.0
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 208 SIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 208 ~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
+++++|-.+|+++++||+. |+.++...++ .+..|.+|+.++|-.+. ....+|++-|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~~--~~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNSA--AQTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCCH--HHHHHHHHHh
Confidence 4667888999999999997 8888765444 35679999999999874 3556776544
No 473
>PRK14079 recF recombination protein F; Provisional
Probab=98.38 E-value=6.1e-07 Score=100.15 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=61.7
Q ss_pred CCChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCE
Q 003437 198 GVSGGERRRVSIGIDII---------HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDR 268 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~---------~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 268 (820)
-+|+||+|++.+|..|+ .+|++++||||+++||...+..+++.|.+.. .++|-+++.+ ..+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t~~~-----~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGTEAP-----PGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcCCCC-----CCCce
Confidence 48999999999999999 8999999999999999999999999886542 3444444433 35899
Q ss_pred EEEEeCCeEEEE
Q 003437 269 IIVLARGRLVYM 280 (820)
Q Consensus 269 v~lL~~G~iv~~ 280 (820)
++.+.+|++.-.
T Consensus 335 ~~~~~~~~~~~~ 346 (349)
T PRK14079 335 TLRIEAGVFTPE 346 (349)
T ss_pred EEEEeccEecCC
Confidence 999999987543
No 474
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=98.37 E-value=8e-07 Score=81.40 Aligned_cols=47 Identities=19% Similarity=0.341 Sum_probs=42.8
Q ss_pred ccchHHHHH-HcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 003437 772 TLIGEDIVY-SMDIQIENIWFDILILLAWGVLYRLFFYLVLRFYSKNV 818 (820)
Q Consensus 772 ~~~G~~~L~-~~g~~~~~~w~~~~il~~~~~~~~~l~~l~L~~~~~~~ 818 (820)
.++|++||+ +|||..+|+|||+||+++|+++|.++.++++.+.+..+
T Consensus 30 ~V~G~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~~~~~~e~~~~~~ 77 (103)
T PF06422_consen 30 YVSGDDYLEESYGYSYSHRWRNFGILIAFWIFFIVLTLLATEFIKFEK 77 (103)
T ss_pred EEeHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 458999997 89999999999999999999999999999999887554
No 475
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.36 E-value=1.3e-07 Score=99.12 Aligned_cols=46 Identities=28% Similarity=0.458 Sum_probs=33.0
Q ss_pred ceeee-eEEEeCCcEEEEEcCCCCcHHHHHHHHH--cCCCCCCCceEEEECC
Q 003437 74 LLHDI-SGQAIRGEIMAIMGPSGAGKSTFLDALA--GRIAQGSLEGSVRIDG 122 (820)
Q Consensus 74 iL~~v-s~~i~~Ge~~allGpnGsGKSTLl~~L~--G~~~~~~~~G~I~i~G 122 (820)
-|+.+ .+-+++|++++|.||+|+|||||...++ +.. .+ ++.+++..
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~-~g--~~~~~is~ 56 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR-DG--DPVIYVTT 56 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHh-cC--CeEEEEEc
Confidence 45553 5678999999999999999999988655 332 21 34556654
No 476
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.36 E-value=1.1e-06 Score=110.03 Aligned_cols=78 Identities=26% Similarity=0.404 Sum_probs=69.2
Q ss_pred CCCCCChHHHHHHHHHHHHh------cC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhc
Q 003437 195 GRRGVSGGERRRVSIGIDII------HK--PSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLL 266 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~------~~--P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 266 (820)
.+..|||||+=.++||.+|+ .+ -++|||||||..||+.....+++.|..+...+.+|++|||+.. +...+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~ee--l~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEE--LKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHH--HHHhC
Confidence 56789999999888877765 45 6899999999999999999999999999988999999999975 56789
Q ss_pred CEEEEEeC
Q 003437 267 DRIIVLAR 274 (820)
Q Consensus 267 D~v~lL~~ 274 (820)
|.++.+..
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 99988875
No 477
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.34 E-value=5.5e-06 Score=94.63 Aligned_cols=176 Identities=18% Similarity=0.185 Sum_probs=106.5
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC-----------ccccceEEEEccC
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT-----------SYMKMVSSYVMQD 140 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~-----------~~~~~~~gyv~Q~ 140 (820)
.++++++ +.+.+||.++|+|+||+|||||+++|+|... ++.|.+...|+.-.. ..+++.+-++.+.
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~--~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~ 227 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE--ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATS 227 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECC
Confidence 4689999 9999999999999999999999999999874 345666665543221 1122233344433
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEE
Q 003437 141 DQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLL 220 (820)
Q Consensus 141 ~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lL 220 (820)
+. ++.+-..-+. ..-.+.+.+...|- |.++-- ..|+ |.+=|.--+. +
T Consensus 228 d~-----~p~~r~~~~~------------~a~t~AE~frd~G~----~Vll~~---DslT-----r~A~A~REis----l 274 (440)
T TIGR01026 228 DQ-----SPLLRLKGAY------------VATAIAEYFRDQGK----DVLLLM---DSVT-----RFAMAQREIG----L 274 (440)
T ss_pred CC-----CHHHHHHHHH------------HHHHHHHHHHHCCC----CEEEEE---eChH-----HHHHHHHHHH----H
Confidence 22 2222111000 00011122222232 111100 0121 1111111011 3
Q ss_pred EEeCC--CCCCCHHHHHHHHHHHHHHHhCCc-------EEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccch
Q 003437 221 FLDEP--TSGLDSTSAYSVVEKVKDIARTGS-------IVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL 286 (820)
Q Consensus 221 llDEP--tsgLD~~~~~~i~~~L~~l~~~g~-------tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 286 (820)
.+.|| +.|+|+.....+-+++.+....+. ||++..||... .++|++..+.+|+++.+....+.
T Consensus 275 ~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 275 AAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE---PIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred hcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc---chhhhhccccceEEEEecchhhC
Confidence 45675 459999999999999999876667 88888898753 46899999999999998876554
No 478
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.32 E-value=9.1e-07 Score=109.22 Aligned_cols=137 Identities=20% Similarity=0.274 Sum_probs=85.5
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHH
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFET 152 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~ 152 (820)
.|-+|+++. ..+.++.|.|||++||||+||.++-..- +.+.-.|||-+..- +++.+
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~i-------------------lAq~G~~VPa~~a~---i~~~d- 651 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVL-------------------LAQIGSFVPAESAR---IGIVD- 651 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHH-------------------HHhcCCceeccceE---ecccC-
Confidence 467777777 6678999999999999999999875421 11111244432211 11111
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHh--cCCCEEEEeCC---CC
Q 003437 153 FMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDII--HKPSLLFLDEP---TS 227 (820)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~--~~P~lLllDEP---ts 227 (820)
.++.++|-. |. ...++|-=+.....++..|- ++++++|+||| |+
T Consensus 652 -----------------------~I~triga~---d~-----i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs 700 (854)
T PRK05399 652 -----------------------RIFTRIGAS---DD-----LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTS 700 (854)
T ss_pred -----------------------eeeeccCcc---cc-----cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCC
Confidence 111122211 11 11356766666666666654 48999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCE
Q 003437 228 GLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDR 268 (820)
Q Consensus 228 gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~ 268 (820)
.+|..+ ....+++.+.+. |.++|++||..+ +..++++
T Consensus 701 ~~dg~a--ia~aile~l~~~~~~~~l~aTH~~e--l~~l~~~ 738 (854)
T PRK05399 701 TYDGLS--IAWAVAEYLHDKIGAKTLFATHYHE--LTELEEK 738 (854)
T ss_pred cchhHH--HHHHHHHHHHhcCCceEEEEechHH--HHHHhhh
Confidence 888444 455566666665 589999999953 6667765
No 479
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.29 E-value=6.2e-07 Score=91.83 Aligned_cols=113 Identities=16% Similarity=0.145 Sum_probs=64.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSIS 166 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~ 166 (820)
+++|.||||||||||.++|++++. .|.+. ++.+|+.+ ..++..+......... ..+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~----~~~~~----------------v~~~D~~~-~~~~~~~~~~~~~~~~---~~~ 56 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG----NPKVV----------------IISQDSYY-KDLSHEELEERKNNNY---DHP 56 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC----CCCeE----------------EEEecccc-cccccccHHHhccCCC---CCC
Confidence 589999999999999999999762 12232 33333222 1122222221110000 001
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 003437 167 RDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDS 231 (820)
Q Consensus 167 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~ 231 (820)
.....+...+.+..+...+..+..+ ...|.|++++..+ .+.+|+++|+|+|..+.++
T Consensus 57 ~~~~~~~~~~~l~~l~~~~~~~~p~-----~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 57 DAFDFDLLISHLQDLKNGKSVEIPV-----YDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred CcccHHHHHHHHHHHHCCCCEeccc-----cccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 1111223445666665544333333 3578888776555 5788999999999998876
No 480
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.28 E-value=1.5e-06 Score=98.73 Aligned_cols=84 Identities=20% Similarity=0.230 Sum_probs=65.4
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECC--
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDG-- 122 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G-- 122 (820)
+..++.++++..|..+ ..+++.++ .+.+||.++|+||||+|||||+++|+++.. ++.|.|.+.|
T Consensus 137 p~~~~r~~v~~~l~TG-----------i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~--pd~gvv~liGer 202 (450)
T PRK06002 137 PPAMTRARVETGLRTG-----------VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA--FDTVVIALVGER 202 (450)
T ss_pred CCCeEeecceEEcCCC-----------cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCeeeeeecccC
Confidence 4458899999888532 35888886 999999999999999999999999999874 4579888854
Q ss_pred -EeCCC-------ccccceEEEEccCCC
Q 003437 123 -KPVTT-------SYMKMVSSYVMQDDQ 142 (820)
Q Consensus 123 -~~~~~-------~~~~~~~gyv~Q~~~ 142 (820)
+++.. ..+++.+++|+|.+.
T Consensus 203 grev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 203 GREVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred CccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 55431 113457899999774
No 481
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.21 E-value=7.1e-07 Score=89.93 Aligned_cols=66 Identities=27% Similarity=0.420 Sum_probs=45.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCcc-c-cceEEEEccCCCCCCCCCHHHHHHH
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSY-M-KMVSSYVMQDDQLFPMLTVFETFMF 155 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~-~-~~~~gyv~Q~~~l~~~lTV~e~l~~ 155 (820)
+||+++|+|+||||||||+++|+|++.+ +.++|.++.... . +...|+.+|+...++..++.+++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999998732 578887764321 1 1234666666544455555555443
No 482
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.17 E-value=5e-06 Score=106.66 Aligned_cols=146 Identities=22% Similarity=0.371 Sum_probs=82.6
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHH
Q 003437 77 DISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFA 156 (820)
Q Consensus 77 ~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~ 156 (820)
=+++..+++++++|+|++|+|||||++.+.+.+.. ..+|.+++++..+... .. .+-.++... .+...
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~~~~v~~~--~~--~~~~~~~~~-------~~~~~- 265 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR-QFQSSVFIDRAFISKS--ME--IYSSANPDD-------YNMKL- 265 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh-cCCeEEEeeccccccc--hh--hcccccccc-------cchhH-
Confidence 34667788999999999999999999999887643 3579998876332210 00 011111000 00000
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q 003437 157 AEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYS 236 (820)
Q Consensus 157 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~ 236 (820)
...++.+.++++..++. +. .+ ++.|+| |..++-+|+||+- |.. .
T Consensus 266 -----------~l~~~~l~~il~~~~~~------~~-----~~-~~~~~~------L~~krvLLVLDdv----~~~---~ 309 (1153)
T PLN03210 266 -----------HLQRAFLSEILDKKDIK------IY-----HL-GAMEER------LKHRKVLIFIDDL----DDQ---D 309 (1153)
T ss_pred -----------HHHHHHHHHHhCCCCcc------cC-----CH-HHHHHH------HhCCeEEEEEeCC----CCH---H
Confidence 01122344444444431 11 12 566666 3355567888984 433 3
Q ss_pred HHHHHHHHH---hCCcEEEEEEcCccHHHHhh-cCEEEEE
Q 003437 237 VVEKVKDIA---RTGSIVLMTIHQPSYRIQML-LDRIIVL 272 (820)
Q Consensus 237 i~~~L~~l~---~~g~tvi~~~H~~~~~i~~~-~D~v~lL 272 (820)
.++.|+... ..|.+||+|||+... +... +|+++.+
T Consensus 310 ~l~~L~~~~~~~~~GsrIIiTTrd~~v-l~~~~~~~~~~v 348 (1153)
T PLN03210 310 VLDALAGQTQWFGSGSRIIVITKDKHF-LRAHGIDHIYEV 348 (1153)
T ss_pred HHHHHHhhCccCCCCcEEEEEeCcHHH-HHhcCCCeEEEe
Confidence 345554433 358899999999764 3322 5776655
No 483
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.14 E-value=3.1e-06 Score=109.32 Aligned_cols=60 Identities=25% Similarity=0.359 Sum_probs=52.8
Q ss_pred CCCCChHHHHHHH----HHHH--------HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCc
Q 003437 196 RRGVSGGERRRVS----IGID--------IIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQP 258 (820)
Q Consensus 196 ~~~LSGGerqRv~----ia~a--------L~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 258 (820)
..+||||||||++ +|++ +..+|++++|||||+|||+.+...++++|.++ |.++|+++|..
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 4689999999996 5644 55899999999999999999999999999888 78899999874
No 484
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.13 E-value=4.7e-05 Score=94.18 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=44.6
Q ss_pred HHhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEEcCccH
Q 003437 212 DIIHKPSLLFLDEPTSGLD-STSAYSVVEKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 212 aL~~~P~lLllDEPtsgLD-~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
.+..+|.++++|||...|| +..+..+.+.++.+.+.|..++++||+++.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 3456899999999999999 889999999999999889999999999875
No 485
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.10 E-value=8.6e-05 Score=79.78 Aligned_cols=37 Identities=27% Similarity=0.448 Sum_probs=32.9
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
...|+++.+-+.+|+++.|.|++|+|||||+..++..
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3478998889999999999999999999999887754
No 486
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.01 E-value=6e-05 Score=93.39 Aligned_cols=47 Identities=26% Similarity=0.263 Sum_probs=43.0
Q ss_pred hcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEEcCccH
Q 003437 214 IHKPSLLFLDEPTSGLD-STSAYSVVEKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 214 ~~~P~lLllDEPtsgLD-~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
-.+|+++++|||+.+|| +..+..+.+.++.+.+.|.+++++||++..
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 680 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLAD 680 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 45899999999999999 788999999999999889999999999864
No 487
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.00 E-value=1.3e-05 Score=91.32 Aligned_cols=110 Identities=19% Similarity=0.201 Sum_probs=72.6
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECC---EeCCC---ccc---cceEEEE-----
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDG---KPVTT---SYM---KMVSSYV----- 137 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G---~~~~~---~~~---~~~~gyv----- 137 (820)
.++++++ +.+.+||.++|+|+||+|||||+++|+|..+. ...|.|.+.| +++.. ..+ ....+++
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats 229 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE-ADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS 229 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc-CCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence 4589998 99999999999999999999999999997732 2347777744 44421 111 1223455
Q ss_pred ccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 003437 138 MQDDQ--LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR 184 (820)
Q Consensus 138 ~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 184 (820)
+|++. +.|.+ +...+....+.+....+...+...++.+++++++|.
T Consensus 230 ~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 230 DQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 88763 44444 555554444333111123356678889999999984
No 488
>PRK01889 GTPase RsgA; Reviewed
Probab=97.93 E-value=1.6e-05 Score=88.93 Aligned_cols=78 Identities=23% Similarity=0.291 Sum_probs=57.4
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHH
Q 003437 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFM 154 (820)
Q Consensus 75 L~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~ 154 (820)
++.+.-.+.+|+.++|+|+||+|||||+++|+|... +..|+|.+++........++.+.+++|+..++.+ +...++.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~--~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~~ 261 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV--QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMRELQ 261 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc--cceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhhc
Confidence 444555677899999999999999999999999875 4679999987543222334567899998877764 3444444
Q ss_pred H
Q 003437 155 F 155 (820)
Q Consensus 155 ~ 155 (820)
+
T Consensus 262 l 262 (356)
T PRK01889 262 L 262 (356)
T ss_pred c
Confidence 3
No 489
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=97.93 E-value=1.9e-05 Score=70.63 Aligned_cols=47 Identities=30% Similarity=0.523 Sum_probs=36.5
Q ss_pred CCCChHHHH-HHHHHHHHh------c------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 003437 197 RGVSGGERR-RVSIGIDII------H------KPSLLFLDEPTSGLDSTSAYSVVEKVKD 243 (820)
Q Consensus 197 ~~LSGGerq-Rv~ia~aL~------~------~P~lLllDEPtsgLD~~~~~~i~~~L~~ 243 (820)
.++|||||| .+.++.+++ . .|++++||||+++||+.....++++|++
T Consensus 31 ~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 31 GTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 479999994 444444432 2 3789999999999999999999999875
No 490
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.93 E-value=0.00012 Score=74.34 Aligned_cols=66 Identities=14% Similarity=0.176 Sum_probs=45.1
Q ss_pred HHHHHHHHcCCC-ccccccccCCCCCCCChHHHHHHH--HHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 003437 173 RVYELLDQLGLR-SATHTYIGNEGRRGVSGGERRRVS--IGIDIIH-KPSLLFLDEPTSGLDSTSAYSVVEKVKDIART 247 (820)
Q Consensus 173 ~v~~~l~~lgL~-~~~~~~ig~~~~~~LSGGerqRv~--ia~aL~~-~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~ 247 (820)
.+.+.++..++. -..-+++ ..+++||+|++. +.+.+-. +++++ |+|++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~-----Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKA-----DKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcEEEEEECc-----ccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 445566666654 1222333 358999999987 5555433 34443 99999999999999999988765
No 491
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.91 E-value=1.3e-05 Score=66.16 Aligned_cols=36 Identities=33% Similarity=0.512 Sum_probs=29.5
Q ss_pred eeeeeEEEeC-CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003437 75 LHDISGQAIR-GEIMAIMGPSGAGKSTFLDALAGRIA 110 (820)
Q Consensus 75 L~~vs~~i~~-Ge~~allGpnGsGKSTLl~~L~G~~~ 110 (820)
+++.++.+.+ |++++|.|||||||||||++|.=.+.
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4556677775 57999999999999999999986653
No 492
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.91 E-value=8.7e-06 Score=82.77 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccH-HHHhhcCEEEEEeCC
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSY-RIQMLLDRIIVLARG 275 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~-~i~~~~D~v~lL~~G 275 (820)
|+-+|..||..+..+|+.+..+| +.+||....++.+.+++..++|.+||+.+|.+.. ....+||.+++++.+
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 77889999999999999988777 8999999999999998887667899999998732 256689999887554
No 493
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.88 E-value=0.00067 Score=71.91 Aligned_cols=186 Identities=13% Similarity=0.125 Sum_probs=99.2
Q ss_pred HHHHHhhHHHhhcChHHHHHHHHHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHhh
Q 003437 528 AVLSWRTALNVIRTPELFLSREIVFAVMALILSSLFK---NLSHHDFKTINRLLNFYIFAVCLVFFSSNDAVPTFIQERF 604 (820)
Q Consensus 528 ~~L~~R~~~~~~Rdp~~~~~r~~~~i~~~lliG~lf~---~l~~~~~~~~~~~~g~~ff~~~~~~~~~~~~i~~f~~eR~ 604 (820)
+.+.+|+++...|.|..+..-.+..++.|+.. ..|. +....+..+.+...+...+ .+.+ .+|.. --.
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~--~~~~-----~~p~l--~~~ 71 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSLAPW--VFLF-----LIPAI--TMR 71 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHHHHH--HHHH-----HHHHH--HHH
Confidence 45789999999999988877776666666442 2221 1111111222222211111 1111 11111 124
Q ss_pred HHHhHhcCCCC--------ChhHHHHHHHHHHhhHHHHHHh---HHhhhhhhccC----CCc-hHHHHHHHHHHHHHHHH
Q 003437 605 IFIRETSHNAY--------RASSYVVSSLLVYLPFFGIQGL---TFAAITKLLLK----LHS-SLLNFWMILFASLITTN 668 (820)
Q Consensus 605 vf~RE~~~g~Y--------~~~aY~la~~l~elP~~~~~~~---if~~i~Y~m~G----l~~-~f~~f~l~l~l~~~~~~ 668 (820)
.+.+||++|.. +++.+.++|.++-+-+.++..+ ++....++... +.. .+...++.+++...+..
T Consensus 72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (240)
T TIGR03518 72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVYT 151 (240)
T ss_pred HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHH
Confidence 66688888875 5688899999987655443222 22222222211 111 12222233334444566
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHhccceecCCCC--CcceeehhccChhhHHHH
Q 003437 669 AYVMLVSALVPSYIAGYAVVIATTALFFLTCGFFLKRGHI--PPYWRWLHYISAIKYPFE 726 (820)
Q Consensus 669 s~~~~i~a~~ps~~~a~~v~~~~~~~~~lf~Gf~i~~~~i--P~~~~W~~yiSp~~Ya~e 726 (820)
++|.++|+++.+...|..++... +++++.|+.. ..++ |++.+|+.|+||..|-.+
T Consensus 152 aig~~iSsl~~~q~~a~~~~~~~--~~~l~~~~~~-l~~~~~~~~~~~l~~~sp~~~~~~ 208 (240)
T TIGR03518 152 AIGLFASSLTENQIVAFIIAVFL--CFLFYFGFDG-LASLLWGGSAYTISELGLSYHYES 208 (240)
T ss_pred HHHHHHHHHhchHHHHHHHHHHH--HHHHHHHHHH-HhhhcchhHHHHHHHcCHHHHHHH
Confidence 89999999998877765444322 2222223211 2333 788899999999777544
No 494
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.87 E-value=0.00012 Score=69.36 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCcEEEEEEcCcc
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-----TGSIVLMTIHQPS 259 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tvi~~~H~~~ 259 (820)
++..........++.++++||.-.. +......+.+.+..+.. .+..+|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3445555666778999999998775 66667778888887753 4778888888654
No 495
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.82 E-value=3.9e-05 Score=85.76 Aligned_cols=52 Identities=27% Similarity=0.355 Sum_probs=46.1
Q ss_pred eEEEEEEEEEECccccccccccccccccee-----------eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLH-----------DISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~-----------~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+||++.|+.. +.+|+ |+++.|.+|+.++|+||+|+|||||++.|+..+
T Consensus 130 ri~Fe~LTf~YP~e-----------r~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 130 RVLFENLTPLYPNE-----------RLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CeEEEEeeecCCCc-----------cceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhh
Confidence 49999999999742 24675 999999999999999999999999999999865
No 496
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.81 E-value=0.0051 Score=65.97 Aligned_cols=202 Identities=15% Similarity=0.160 Sum_probs=125.0
Q ss_pred HHHHHHHHHHhhHHHhhcChHHHHH-----HHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHh--hhhc
Q 003437 523 WLREVAVLSWRTALNVIRTPELFLS-----REIVFAVMALILSSLFKNLSHHDFKTINRLLNFYIFAVCLVFFS--SNDA 595 (820)
Q Consensus 523 ~~~Q~~~L~~R~~~~~~Rdp~~~~~-----r~~~~i~~~lliG~lf~~l~~~~~~~~~~~~g~~ff~~~~~~~~--~~~~ 595 (820)
.++.++.|.+|.++..+|+..+=.. =+.+.++++++.|.++-. +..+. -..-..|.+ .+.++. ....
T Consensus 16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~-~~~~~-~~~l~~G~~----~w~f~~~~i~~~ 89 (263)
T COG1682 16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRS-PGLNF-LAYLLAGLI----LWFFFSEAISEG 89 (263)
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhC-CCcch-HHHHHHHHH----HHHHHHHHHHhH
Confidence 5677888999999998887643222 234555566666666543 21111 111122221 222222 2334
Q ss_pred HHHHHHHhhHHHhHhcCCCCChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCC-chHHHHHHHHHHHHHHHHHHHHHH
Q 003437 596 VPTFIQERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLH-SSLLNFWMILFASLITTNAYVMLV 674 (820)
Q Consensus 596 i~~f~~eR~vf~RE~~~g~Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~-~~f~~f~l~l~l~~~~~~s~~~~i 674 (820)
...+.+...++.|-+ .++..+.+++++.++--..+..++....+=|.-+.. ..+..+...+.+..+.+.++++++
T Consensus 90 ~~s~~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~s~~~l~~~~~l~~l~l~~~g~~l~~ 165 (263)
T COG1682 90 AGSVVANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEPSWHWLLLLPALLLLILFSVGLGLIL 165 (263)
T ss_pred HHHhhhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556655442 488999999999987776666665555444444444 223344444555555666777777
Q ss_pred HHhcchH-HHHHHHHHHHHHHHHHhccceecCCCCCcceeehhccChhhHHHHHHHHhhcCC
Q 003437 675 SALVPSY-IAGYAVVIATTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTNEFKG 735 (820)
Q Consensus 675 ~a~~ps~-~~a~~v~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~nef~~ 735 (820)
|.++.-+ +....+ ..++-+++..+|.+-+.+.+|.-++|+.++||+.+-.|.+=..-+++
T Consensus 166 a~l~v~fRD~~~i~-~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~ 226 (263)
T COG1682 166 ASLGVRFRDLGQIL-GVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGG 226 (263)
T ss_pred HhHhhhcccHHHHH-HHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCC
Confidence 6665443 233343 44445667788999999999999999999999999999887766655
No 497
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.81 E-value=2.1e-05 Score=79.91 Aligned_cols=37 Identities=35% Similarity=0.632 Sum_probs=30.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
|++++|+||||||||||+++|++... ..+.+++..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~-----~~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ-----TQLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC-----CeEEEcCEECC
Confidence 78999999999999999999999763 25777776654
No 498
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.80 E-value=8e-06 Score=84.40 Aligned_cols=28 Identities=32% Similarity=0.513 Sum_probs=25.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRIA 110 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~~ 110 (820)
++|++++|+||||||||||++.|++++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4699999999999999999999999763
No 499
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.78 E-value=8.5e-05 Score=88.93 Aligned_cols=112 Identities=21% Similarity=0.288 Sum_probs=71.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCC------CCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHH
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQG------SLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAA 157 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~~~~------~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~ 157 (820)
..+.++|+||||+|||||+++|.+..... ...+-|.+||..+.. ..+. + .+-.+.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~-d~~~----------------i-~~~llg- 234 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRW-DPRE----------------V-TNPLLG- 234 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccC-CHHH----------------H-hHHhcC-
Confidence 34679999999999999999999875321 112335555543310 0000 0 011111
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Q 003437 158 EVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSV 237 (820)
Q Consensus 158 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i 237 (820)
.. .+...+.+.+.++..|+.+..+..+. .+||| +||||| +..||+..+..+
T Consensus 235 ------~~-~~~~~~~a~~~l~~~gl~~~~~g~v~-----~asgG----------------vL~LDE-i~~Ld~~~Q~~L 285 (615)
T TIGR02903 235 ------SV-HDPIYQGARRDLAETGVPEPKTGLVT-----DAHGG----------------VLFIDE-IGELDPLLQNKL 285 (615)
T ss_pred ------Cc-cHHHHHHHHHHHHHcCCCchhcCchh-----hcCCC----------------eEEEec-cccCCHHHHHHH
Confidence 01 11122345556788898776666553 58888 999999 799999999999
Q ss_pred HHHHHH
Q 003437 238 VEKVKD 243 (820)
Q Consensus 238 ~~~L~~ 243 (820)
++.|++
T Consensus 286 l~~Le~ 291 (615)
T TIGR02903 286 LKVLED 291 (615)
T ss_pred HHHHhh
Confidence 888865
No 500
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.78 E-value=3.3e-05 Score=75.20 Aligned_cols=64 Identities=14% Similarity=0.144 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 003437 172 KRVYELLDQLGLRSA-THTYIGNEGRRGVSGGERRRVSIGIDI-----IHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI 244 (820)
Q Consensus 172 ~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSGGerqRv~ia~aL-----~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l 244 (820)
..+.+.+...+..-. ..+++ ..++++++++....... ...|+++ |+|++|.....++++.|.++
T Consensus 100 ~~~~~~l~~~~~~vi~v~nK~-----D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 100 LEMLDWLEELGIPFLVVLTKA-----DKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHcCCCEEEEEEch-----hcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 345556666653311 22222 24788988877666553 3345655 99999999999999988765
Done!