Query 003437
Match_columns 820
No_of_seqs 414 out of 3222
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 01:11:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003437.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003437hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 6.9E-49 2.4E-53 432.6 28.7 225 45-288 22-253 (366)
2 3tif_A Uncharacterized ABC tra 100.0 3.8E-48 1.3E-52 405.5 28.4 222 48-286 2-232 (235)
3 3rlf_A Maltose/maltodextrin im 100.0 6E-48 2E-52 427.7 29.7 219 47-288 3-223 (381)
4 3gfo_A Cobalt import ATP-bindi 100.0 4.3E-48 1.5E-52 413.6 27.1 221 46-288 6-233 (275)
5 3fvq_A Fe(3+) IONS import ATP- 100.0 3.8E-48 1.3E-52 426.5 26.5 219 47-288 4-228 (359)
6 1b0u_A Histidine permease; ABC 100.0 7.8E-48 2.7E-52 409.5 27.8 219 47-288 6-242 (262)
7 2olj_A Amino acid ABC transpor 100.0 1.4E-47 4.9E-52 407.1 28.4 219 47-288 24-248 (263)
8 2pcj_A ABC transporter, lipopr 100.0 3.3E-47 1.1E-51 395.7 28.7 213 47-283 4-223 (224)
9 1vpl_A ABC transporter, ATP-bi 100.0 3.7E-47 1.3E-51 402.6 28.8 220 47-289 15-236 (256)
10 1z47_A CYSA, putative ABC-tran 100.0 4.7E-47 1.6E-51 418.0 29.2 220 46-288 13-235 (355)
11 2it1_A 362AA long hypothetical 100.0 7.8E-47 2.7E-51 417.5 29.4 219 47-288 3-223 (362)
12 1g29_1 MALK, maltose transport 100.0 1.1E-46 3.7E-51 418.5 29.8 219 47-288 3-229 (372)
13 1ji0_A ABC transporter; ATP bi 100.0 5.2E-47 1.8E-51 398.2 25.5 219 45-287 4-227 (240)
14 2yyz_A Sugar ABC transporter, 100.0 6.3E-47 2.2E-51 417.9 27.4 219 47-288 3-223 (359)
15 1g6h_A High-affinity branched- 100.0 3.6E-47 1.2E-51 403.4 24.2 219 47-285 7-239 (257)
16 4g1u_C Hemin import ATP-bindin 100.0 6.2E-47 2.1E-51 403.2 25.2 217 46-287 10-236 (266)
17 1oxx_K GLCV, glucose, ABC tran 100.0 9.4E-47 3.2E-51 416.5 25.9 219 47-288 3-230 (353)
18 1v43_A Sugar-binding transport 100.0 1.2E-46 4.2E-51 417.4 26.6 219 47-288 11-231 (372)
19 2onk_A Molybdate/tungstate ABC 100.0 4.2E-46 1.4E-50 391.0 24.6 213 48-288 2-216 (240)
20 3d31_A Sulfate/molybdate ABC t 100.0 4.4E-46 1.5E-50 409.8 25.5 213 48-287 2-216 (348)
21 2d2e_A SUFC protein; ABC-ATPas 100.0 9.9E-46 3.4E-50 390.8 23.8 220 47-284 3-229 (250)
22 2yz2_A Putative ABC transporte 100.0 9.8E-46 3.3E-50 394.3 23.6 224 47-289 2-228 (266)
23 2zu0_C Probable ATP-dependent 100.0 6.3E-45 2.2E-49 388.2 28.0 224 47-287 20-253 (267)
24 2ihy_A ABC transporter, ATP-bi 100.0 9.5E-46 3.2E-50 396.6 20.5 222 46-287 20-251 (279)
25 2nq2_C Hypothetical ABC transp 100.0 4.7E-44 1.6E-48 378.4 27.4 211 47-287 4-216 (253)
26 2ff7_A Alpha-hemolysin translo 100.0 1.3E-44 4.6E-49 381.3 22.7 218 45-287 5-231 (247)
27 3nh6_A ATP-binding cassette SU 100.0 1.6E-44 5.5E-49 391.0 23.1 216 46-288 52-277 (306)
28 2ixe_A Antigen peptide transpo 100.0 1.2E-44 4.3E-49 386.6 20.3 219 47-288 16-245 (271)
29 2qi9_C Vitamin B12 import ATP- 100.0 3.3E-44 1.1E-48 378.4 22.0 208 47-287 4-221 (249)
30 1mv5_A LMRA, multidrug resista 100.0 3.6E-44 1.2E-48 377.3 18.0 216 48-288 2-226 (243)
31 1sgw_A Putative ABC transporte 100.0 6.3E-44 2.2E-48 367.9 17.3 203 45-277 8-210 (214)
32 2pjz_A Hypothetical protein ST 100.0 4.8E-43 1.6E-47 372.4 22.2 210 48-287 2-214 (263)
33 2ghi_A Transport protein; mult 100.0 4E-43 1.4E-47 372.9 21.6 216 47-288 17-242 (260)
34 2pze_A Cystic fibrosis transme 100.0 5.5E-42 1.9E-46 357.5 21.4 204 47-287 6-217 (229)
35 3gd7_A Fusion complex of cysti 100.0 1.2E-42 4E-47 387.8 16.6 216 46-288 18-242 (390)
36 2cbz_A Multidrug resistance-as 100.0 1.2E-41 4.1E-46 356.7 19.5 208 47-288 3-217 (237)
37 4a82_A Cystic fibrosis transme 100.0 2.7E-41 9.2E-46 397.7 20.2 217 46-288 338-564 (578)
38 2yl4_A ATP-binding cassette SU 100.0 8.1E-41 2.8E-45 395.0 23.6 221 46-288 339-570 (595)
39 3b60_A Lipid A export ATP-bind 100.0 9.5E-41 3.2E-45 393.4 22.5 218 46-288 340-567 (582)
40 3b5x_A Lipid A export ATP-bind 100.0 1.1E-40 3.7E-45 393.0 22.7 218 46-288 340-567 (582)
41 3qf4_A ABC transporter, ATP-bi 100.0 7.4E-41 2.5E-45 394.3 20.3 217 46-288 340-566 (587)
42 3qf4_B Uncharacterized ABC tra 100.0 2.5E-40 8.5E-45 390.8 15.9 216 46-288 353-578 (598)
43 2bbs_A Cystic fibrosis transme 100.0 2E-39 6.9E-44 349.1 17.2 199 47-287 40-246 (290)
44 4f4c_A Multidrug resistance pr 100.0 1.1E-39 3.9E-44 414.8 17.4 220 46-288 1075-1304(1321)
45 4f4c_A Multidrug resistance pr 100.0 5.4E-39 1.8E-43 408.6 21.1 218 46-288 414-641 (1321)
46 3g5u_A MCG1178, multidrug resi 100.0 1.5E-37 5.1E-42 394.5 18.9 220 46-288 386-613 (1284)
47 3g5u_A MCG1178, multidrug resi 100.0 7.8E-37 2.7E-41 387.9 22.1 220 46-288 1029-1258(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 6.2E-36 2.1E-40 351.9 23.8 205 46-288 356-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 5.3E-36 1.8E-40 348.9 21.2 205 46-288 286-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 4.9E-35 1.7E-39 340.0 21.9 207 46-288 268-477 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 2.1E-33 7.3E-38 329.9 20.1 192 73-289 361-560 (608)
52 2iw3_A Elongation factor 3A; a 100.0 4.8E-33 1.6E-37 338.1 23.6 200 45-288 433-635 (986)
53 3ux8_A Excinuclease ABC, A sub 100.0 9.3E-34 3.2E-38 339.2 16.7 208 72-288 31-298 (670)
54 3bk7_A ABC transporter ATP-bin 100.0 2.9E-34 9.9E-39 337.7 11.9 193 51-275 95-304 (607)
55 1yqt_A RNAse L inhibitor; ATP- 100.0 4.7E-34 1.6E-38 332.4 12.1 196 48-275 21-234 (538)
56 2iw3_A Elongation factor 3A; a 100.0 3.6E-33 1.2E-37 339.2 14.8 208 46-282 670-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 2.5E-32 8.5E-37 326.8 18.2 196 73-287 336-639 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 5.7E-31 1.9E-35 309.3 12.0 188 73-279 92-301 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 2.9E-31 1E-35 308.3 8.2 174 82-277 22-215 (538)
60 2vf7_A UVRA2, excinuclease ABC 100.0 9.2E-30 3.1E-34 306.9 19.3 211 45-288 500-827 (842)
61 3pih_A Uvrabc system protein A 100.0 1.2E-29 4.2E-34 308.1 20.3 200 73-288 598-902 (916)
62 2r6f_A Excinuclease ABC subuni 100.0 5.7E-30 1.9E-34 308.8 16.6 210 46-288 628-942 (972)
63 2ygr_A Uvrabc system protein A 100.0 2.3E-29 7.7E-34 304.7 17.4 210 46-288 646-960 (993)
64 4aby_A DNA repair protein RECN 99.9 1.7E-27 5.9E-32 268.8 19.3 204 73-281 49-381 (415)
65 2npi_A Protein CLP1; CLP1-PCF1 99.9 3.5E-30 1.2E-34 293.7 -9.6 186 75-286 128-336 (460)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 2.3E-24 7.8E-29 239.6 17.5 83 195-279 276-364 (365)
67 3b85_A Phosphate starvation-in 99.9 8.8E-28 3E-32 246.4 -11.4 142 71-260 12-160 (208)
68 1e69_A Chromosome segregation 99.9 1.1E-23 3.8E-28 230.3 13.6 87 196-285 217-310 (322)
69 4gp7_A Metallophosphoesterase; 99.9 1.9E-24 6.4E-29 214.7 4.1 144 77-260 1-161 (171)
70 1tq4_A IIGP1, interferon-induc 99.9 4.5E-26 1.5E-30 255.7 -12.0 170 72-269 36-247 (413)
71 1ye8_A Protein THEP1, hypothet 99.9 1.2E-23 4.3E-28 210.4 3.3 145 87-279 2-159 (178)
72 2v9p_A Replication protein E1; 99.9 8E-27 2.7E-31 251.8 -23.1 166 48-290 102-268 (305)
73 1znw_A Guanylate kinase, GMP k 99.9 5.9E-26 2E-30 232.3 -18.2 181 72-274 9-203 (207)
74 3b9q_A Chloroplast SRP recepto 99.8 4.7E-23 1.6E-27 223.0 -1.6 174 75-277 90-284 (302)
75 3sop_A Neuronal-specific septi 99.8 3.4E-23 1.2E-27 220.7 -6.2 148 87-259 4-151 (270)
76 2dpy_A FLII, flagellum-specifi 99.8 1.5E-23 5.3E-28 237.7 -10.7 193 46-287 130-343 (438)
77 2o5v_A DNA replication and rep 99.8 6E-20 2E-24 202.9 16.7 84 195-286 261-354 (359)
78 2og2_A Putative signal recogni 99.8 6.4E-22 2.2E-26 218.3 -0.2 172 76-276 148-340 (359)
79 2pt7_A CAG-ALFA; ATPase, prote 99.8 2.1E-21 7.1E-26 212.8 0.5 131 74-276 160-291 (330)
80 3qkt_A DNA double-strand break 99.8 3.7E-19 1.3E-23 195.8 17.6 76 196-273 246-327 (339)
81 1cr0_A DNA primase/helicase; R 99.8 9.3E-21 3.2E-25 204.1 4.1 185 72-277 22-237 (296)
82 1z6g_A Guanylate kinase; struc 99.8 5.8E-24 2E-28 219.6 -20.4 152 73-246 11-175 (218)
83 3aez_A Pantothenate kinase; tr 99.8 9E-24 3.1E-28 229.7 -20.8 159 82-275 87-245 (312)
84 3pih_A Uvrabc system protein A 99.8 6.8E-20 2.3E-24 222.9 9.4 161 103-288 386-560 (916)
85 4ad8_A DNA repair protein RECN 99.8 2.9E-19 9.8E-24 207.6 11.6 77 196-275 394-473 (517)
86 2jeo_A Uridine-cytidine kinase 99.8 7.2E-21 2.5E-25 199.6 -3.2 170 71-276 11-180 (245)
87 2r6f_A Excinuclease ABC subuni 99.8 1.5E-18 5.1E-23 209.8 15.3 131 146-288 451-600 (972)
88 2o8b_B DNA mismatch repair pro 99.8 6.1E-20 2.1E-24 226.8 3.1 173 46-283 749-937 (1022)
89 2obl_A ESCN; ATPase, hydrolase 99.8 9.8E-21 3.3E-25 208.6 -4.3 194 46-287 44-254 (347)
90 1tf7_A KAIC; homohexamer, hexa 99.8 7.4E-19 2.5E-23 204.4 10.8 155 79-276 275-444 (525)
91 2vf7_A UVRA2, excinuclease ABC 99.7 1.1E-18 3.8E-23 210.6 10.2 180 93-288 270-475 (842)
92 3thx_A DNA mismatch repair pro 99.7 2.9E-19 9.9E-24 218.3 4.3 161 71-287 648-812 (934)
93 1tf7_A KAIC; homohexamer, hexa 99.7 3.9E-21 1.3E-25 223.7 -12.3 169 72-276 25-211 (525)
94 2ygr_A Uvrabc system protein A 99.7 3E-18 1E-22 207.9 11.6 133 144-288 466-617 (993)
95 4a74_A DNA repair and recombin 99.7 5.3E-19 1.8E-23 182.0 0.8 153 80-276 20-201 (231)
96 2ehv_A Hypothetical protein PH 99.7 3.9E-19 1.4E-23 185.3 -0.2 169 75-274 19-207 (251)
97 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 2.8E-17 9.7E-22 159.2 11.3 80 195-276 54-141 (148)
98 2eyu_A Twitching motility prot 99.7 2.2E-18 7.6E-23 182.7 2.5 133 73-274 15-147 (261)
99 3thx_B DNA mismatch repair pro 99.7 1.6E-18 5.4E-23 211.2 0.3 145 71-269 659-805 (918)
100 2qnr_A Septin-2, protein NEDD5 99.7 2.2E-19 7.5E-24 194.3 -7.7 164 51-259 2-168 (301)
101 3asz_A Uridine kinase; cytidin 99.7 6.9E-20 2.4E-24 187.0 -12.2 146 82-259 3-162 (211)
102 1ewq_A DNA mismatch repair pro 99.7 7.2E-18 2.5E-22 202.6 2.9 146 72-281 566-717 (765)
103 1w1w_A Structural maintenance 99.7 1.6E-16 5.3E-21 180.4 13.2 74 198-273 333-410 (430)
104 1rj9_A FTSY, signal recognitio 99.7 3E-18 1E-22 185.5 -1.4 149 84-259 101-259 (304)
105 3szr_A Interferon-induced GTP- 99.7 1.1E-18 3.9E-23 205.9 -5.6 195 47-290 10-239 (608)
106 1pzn_A RAD51, DNA repair and r 99.6 4.7E-18 1.6E-22 187.6 -3.3 166 74-283 119-310 (349)
107 1wb9_A DNA mismatch repair pro 99.6 3.1E-17 1E-21 198.2 3.3 156 72-282 595-752 (800)
108 1nlf_A Regulatory protein REPA 99.6 1.9E-15 6.6E-20 161.2 12.1 151 81-259 26-182 (279)
109 2i3b_A HCR-ntpase, human cance 99.6 4.7E-18 1.6E-22 171.5 -7.9 157 85-281 1-169 (189)
110 2w0m_A SSO2452; RECA, SSPF, un 99.6 7.4E-16 2.5E-20 158.3 7.7 169 72-276 9-193 (235)
111 1pui_A ENGB, probable GTP-bind 99.6 1.5E-17 5.3E-22 168.6 -6.4 179 47-250 3-202 (210)
112 2qag_C Septin-7; cell cycle, c 99.6 6.4E-17 2.2E-21 182.0 -2.9 164 47-259 11-178 (418)
113 3jvv_A Twitching mobility prot 99.6 3.4E-16 1.2E-20 172.9 2.8 128 81-275 119-246 (356)
114 1s96_A Guanylate kinase, GMP k 99.5 1.4E-16 4.9E-21 164.4 -4.2 149 79-290 10-162 (219)
115 2bdt_A BH3686; alpha-beta prot 99.5 1.1E-18 3.9E-23 175.0 -22.7 172 85-286 2-182 (189)
116 2cvh_A DNA repair and recombin 99.5 2.9E-14 9.9E-19 145.5 9.2 154 73-275 7-185 (220)
117 3kta_B Chromosome segregation 99.5 5.3E-14 1.8E-18 139.7 10.2 78 196-276 62-145 (173)
118 2qag_B Septin-6, protein NEDD5 99.5 1.7E-15 5.8E-20 169.9 -1.7 164 75-257 30-218 (427)
119 1zp6_A Hypothetical protein AT 99.4 2.1E-16 7.3E-21 158.2 -11.0 140 82-245 6-148 (191)
120 1lw7_A Transcriptional regulat 99.4 6.2E-17 2.1E-21 179.7 -18.6 176 74-286 157-353 (365)
121 1nij_A Hypothetical protein YJ 99.4 4.9E-17 1.7E-21 177.3 -19.2 163 86-267 5-197 (318)
122 2ewv_A Twitching motility prot 99.4 2E-14 6.9E-19 159.8 0.8 131 74-273 127-257 (372)
123 2gza_A Type IV secretion syste 99.4 3E-14 1E-18 157.9 2.1 137 74-275 164-302 (361)
124 2bbw_A Adenylate kinase 4, AK4 99.4 2.9E-16 1E-20 164.4 -13.5 148 84-248 26-200 (246)
125 2rcn_A Probable GTPase ENGC; Y 99.4 1.7E-13 5.9E-18 150.7 6.3 123 74-213 205-328 (358)
126 1n0w_A DNA repair protein RAD5 99.4 5.6E-13 1.9E-17 138.0 8.7 158 74-275 12-209 (243)
127 3auy_A DNA double-strand break 99.4 2E-12 6.8E-17 143.8 12.2 76 196-274 278-360 (371)
128 2f1r_A Molybdopterin-guanine d 99.3 5.1E-15 1.7E-19 146.8 -8.5 139 86-249 3-164 (171)
129 1htw_A HI0065; nucleotide-bind 99.3 3E-14 1E-18 139.4 -2.9 78 72-155 20-97 (158)
130 2yhs_A FTSY, cell division pro 99.3 3.6E-14 1.2E-18 161.1 -3.3 154 75-257 283-448 (503)
131 3e70_C DPA, signal recognition 99.3 4.6E-13 1.6E-17 146.2 3.6 143 83-258 127-279 (328)
132 2qm8_A GTPase/ATPase; G protei 99.3 8.8E-15 3E-19 160.7 -11.2 174 48-246 30-260 (337)
133 2kjq_A DNAA-related protein; s 99.3 3.2E-12 1.1E-16 123.7 6.2 45 214-259 81-126 (149)
134 1udx_A The GTP-binding protein 99.3 1.2E-13 4E-18 155.4 -4.6 169 75-268 147-318 (416)
135 2yv5_A YJEQ protein; hydrolase 99.2 4.7E-13 1.6E-17 144.7 -0.7 121 83-212 163-301 (302)
136 1odf_A YGR205W, hypothetical 3 99.2 3.1E-13 1E-17 145.3 -3.1 134 83-233 29-169 (290)
137 3ec2_A DNA replication protein 99.2 6.1E-12 2.1E-16 124.8 5.8 47 214-260 98-145 (180)
138 1sxj_E Activator 1 40 kDa subu 99.2 9.2E-12 3.1E-16 136.6 6.9 137 87-260 38-176 (354)
139 1p9r_A General secretion pathw 99.2 1.4E-14 4.8E-19 163.1 -18.1 135 73-221 157-314 (418)
140 3lda_A DNA repair protein RAD5 99.2 1E-10 3.5E-15 130.9 12.9 159 74-276 166-364 (400)
141 2oap_1 GSPE-2, type II secreti 99.2 5E-14 1.7E-18 162.6 -14.4 177 72-266 247-457 (511)
142 3c8u_A Fructokinase; YP_612366 99.1 4.6E-13 1.6E-17 136.5 -9.2 164 82-290 19-183 (208)
143 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 1.5E-13 5E-18 153.2 -15.5 170 81-284 16-209 (392)
144 1lvg_A Guanylate kinase, GMP k 99.0 2.2E-14 7.7E-19 145.4 -23.0 57 209-274 116-173 (198)
145 1in4_A RUVB, holliday junction 99.0 1.3E-12 4.4E-17 143.2 -11.2 166 73-268 32-211 (334)
146 1u0l_A Probable GTPase ENGC; p 99.0 1.4E-11 4.7E-16 133.1 -3.1 103 81-192 165-290 (301)
147 2x8a_A Nuclear valosin-contain 99.0 1.2E-13 4.2E-18 147.2 -19.6 128 72-227 33-164 (274)
148 1t9h_A YLOQ, probable GTPase E 99.0 4.4E-11 1.5E-15 129.1 -0.5 117 81-206 169-303 (307)
149 1sq5_A Pantothenate kinase; P- 98.9 1.5E-11 5.2E-16 133.2 -6.4 98 47-160 37-156 (308)
150 2r6a_A DNAB helicase, replicat 98.9 1E-09 3.5E-14 125.2 6.6 181 72-277 190-401 (454)
151 2ius_A DNA translocase FTSK; n 98.9 6.6E-11 2.2E-15 135.8 -3.4 163 77-259 159-343 (512)
152 2dr3_A UPF0273 protein PH0284; 98.9 1.2E-10 4.2E-15 120.5 -1.5 60 215-274 127-196 (247)
153 1vma_A Cell division protein F 98.9 1.3E-09 4.4E-14 117.8 5.2 113 78-245 97-212 (306)
154 2zr9_A Protein RECA, recombina 98.8 5.8E-09 2E-13 114.8 8.9 154 74-282 48-237 (349)
155 1ls1_A Signal recognition part 98.8 1.3E-08 4.3E-13 109.5 9.5 118 76-244 91-209 (295)
156 3euj_A Chromosome partition pr 98.7 4.4E-09 1.5E-13 119.9 4.6 51 73-126 18-68 (483)
157 2px0_A Flagellar biosynthesis 98.7 7.9E-09 2.7E-13 111.2 6.3 140 83-279 103-246 (296)
158 3tr0_A Guanylate kinase, GMP k 98.7 7.8E-10 2.7E-14 111.4 -2.3 67 79-151 1-70 (205)
159 1iy2_A ATP-dependent metallopr 98.7 1.5E-11 5.1E-16 130.9 -16.7 123 73-219 63-190 (278)
160 1oix_A RAS-related protein RAB 98.7 2.4E-09 8.2E-14 107.0 -0.1 38 205-244 152-189 (191)
161 1ixz_A ATP-dependent metallopr 98.7 2.1E-11 7.3E-16 127.7 -16.3 123 73-219 39-166 (254)
162 3k1j_A LON protease, ATP-depen 98.6 5E-10 1.7E-14 132.3 -7.3 159 72-243 47-227 (604)
163 1qhl_A Protein (cell division 98.5 7.6E-09 2.6E-13 106.9 -3.0 59 79-140 22-91 (227)
164 3hr8_A Protein RECA; alpha and 98.4 9.9E-08 3.4E-12 104.9 4.5 49 74-124 48-99 (356)
165 2qtf_A Protein HFLX, GTP-bindi 98.4 4E-08 1.4E-12 108.7 0.5 151 84-246 177-353 (364)
166 2f9l_A RAB11B, member RAS onco 98.4 1.9E-07 6.5E-12 93.5 4.4 37 207-245 130-166 (199)
167 4eun_A Thermoresistant glucoki 98.4 1.6E-08 5.4E-13 102.1 -3.7 57 79-141 23-81 (200)
168 1svm_A Large T antigen; AAA+ f 98.3 8.5E-10 2.9E-14 122.4 -14.4 142 72-227 156-312 (377)
169 2ce7_A Cell division protein F 98.3 4.9E-07 1.7E-11 103.2 7.3 59 201-259 93-165 (476)
170 3lnc_A Guanylate kinase, GMP k 98.3 1.5E-07 5.1E-12 97.0 2.3 38 72-109 14-52 (231)
171 4a1f_A DNAB helicase, replicat 98.2 8.1E-07 2.8E-11 97.0 5.3 129 73-256 34-164 (338)
172 3kta_A Chromosome segregation 98.2 1.5E-06 5.2E-11 85.6 6.1 36 74-110 14-51 (182)
173 2xau_A PRE-mRNA-splicing facto 98.2 1.5E-06 5.1E-11 105.3 7.1 70 198-268 190-261 (773)
174 3nwj_A ATSK2; P loop, shikimat 98.2 1.5E-07 5.3E-12 98.6 -1.6 52 47-109 17-72 (250)
175 2e87_A Hypothetical protein PH 98.1 3.1E-06 1.1E-10 93.2 7.3 60 198-259 231-293 (357)
176 1jjv_A Dephospho-COA kinase; P 98.1 4.5E-07 1.5E-11 91.4 -0.1 127 87-273 4-131 (206)
177 2dhr_A FTSH; AAA+ protein, hex 98.0 2.3E-08 7.8E-13 114.8 -12.0 129 73-227 54-187 (499)
178 3a00_A Guanylate kinase, GMP k 98.0 1.9E-06 6.4E-11 85.7 1.7 26 85-110 1-26 (186)
179 1zu4_A FTSY; GTPase, signal re 97.9 1.4E-06 4.7E-11 94.7 0.6 76 75-152 95-183 (320)
180 3uie_A Adenylyl-sulfate kinase 97.9 3.6E-07 1.2E-11 92.0 -4.1 51 73-126 13-65 (200)
181 1fnn_A CDC6P, cell division co 97.9 2.3E-05 7.7E-10 86.2 10.1 44 215-259 124-170 (389)
182 3t34_A Dynamin-related protein 97.9 2.1E-05 7.3E-10 86.5 9.8 57 199-256 155-212 (360)
183 2dy1_A Elongation factor G; tr 97.9 3.8E-06 1.3E-10 100.1 3.7 132 80-260 4-138 (665)
184 3vaa_A Shikimate kinase, SK; s 97.9 5.5E-06 1.9E-10 83.2 3.6 38 72-109 12-49 (199)
185 2z4s_A Chromosomal replication 97.8 2.1E-06 7E-11 97.4 -0.4 69 215-283 193-263 (440)
186 1v5w_A DMC1, meiotic recombina 97.8 7.8E-05 2.7E-09 81.6 12.2 145 75-259 111-275 (343)
187 4e22_A Cytidylate kinase; P-lo 97.8 1.5E-06 5.2E-11 91.0 -1.6 63 74-141 19-96 (252)
188 2j41_A Guanylate kinase; GMP, 97.8 8.9E-06 3E-10 81.4 4.0 30 81-110 2-31 (207)
189 3b9p_A CG5977-PA, isoform A; A 97.8 0.00016 5.5E-09 76.8 13.2 73 200-272 97-186 (297)
190 2vp4_A Deoxynucleoside kinase; 97.8 7.2E-06 2.5E-10 84.4 2.3 39 81-125 16-54 (230)
191 1kgd_A CASK, peripheral plasma 97.7 1.3E-05 4.5E-10 79.2 3.5 36 84-120 4-39 (180)
192 3bh0_A DNAB-like replicative h 97.7 2.8E-05 9.6E-10 84.1 6.3 131 73-256 56-189 (315)
193 2z43_A DNA repair and recombin 97.7 0.00017 5.8E-09 78.2 12.3 146 74-258 95-258 (324)
194 1knq_A Gluconate kinase; ALFA/ 97.7 1.1E-05 3.9E-10 78.8 1.7 37 83-125 6-42 (175)
195 3tau_A Guanylate kinase, GMP k 97.6 3.6E-05 1.2E-09 77.8 4.1 28 83-110 6-33 (208)
196 1ega_A Protein (GTP-binding pr 97.5 5.4E-05 1.8E-09 81.3 5.2 63 199-269 101-169 (301)
197 3ney_A 55 kDa erythrocyte memb 97.5 3.3E-05 1.1E-09 77.9 3.2 29 82-110 16-44 (197)
198 3tqc_A Pantothenate kinase; bi 97.5 9.3E-06 3.2E-10 88.0 -0.9 39 72-110 73-117 (321)
199 2qt1_A Nicotinamide riboside k 97.5 4.7E-05 1.6E-09 76.6 3.6 29 81-109 17-45 (207)
200 1rz3_A Hypothetical protein rb 97.4 2.5E-05 8.6E-10 78.6 0.6 41 82-124 19-59 (201)
201 3kl4_A SRP54, signal recogniti 97.4 0.00027 9.2E-09 79.5 8.9 124 84-256 96-222 (433)
202 1kag_A SKI, shikimate kinase I 97.4 4.6E-05 1.6E-09 74.1 2.2 26 84-109 3-28 (173)
203 2qby_A CDC6 homolog 1, cell di 97.4 4.4E-05 1.5E-09 83.5 2.2 27 83-109 43-69 (386)
204 2q6t_A DNAB replication FORK h 97.4 0.0011 3.8E-08 74.9 13.4 154 73-257 188-362 (444)
205 3cf0_A Transitional endoplasmi 97.3 0.00031 1.1E-08 75.1 7.8 29 81-109 45-73 (301)
206 3cr8_A Sulfate adenylyltranfer 97.3 4.9E-05 1.7E-09 88.2 1.1 43 81-125 365-409 (552)
207 1f2t_A RAD50 ABC-ATPase; DNA d 97.2 0.00017 5.7E-09 69.2 3.7 31 76-107 15-45 (149)
208 3llm_A ATP-dependent RNA helic 97.2 0.00056 1.9E-08 70.3 7.4 66 200-267 162-228 (235)
209 1ypw_A Transitional endoplasmi 97.2 0.00024 8.2E-09 86.4 5.3 30 80-109 233-262 (806)
210 1u94_A RECA protein, recombina 97.1 0.0062 2.1E-07 66.8 15.4 35 74-108 50-86 (356)
211 1mky_A Probable GTP-binding pr 97.1 0.0005 1.7E-08 77.7 6.2 39 87-125 182-230 (439)
212 3lxx_A GTPase IMAP family memb 97.0 0.0049 1.7E-07 63.1 12.7 43 215-257 111-155 (239)
213 3ice_A Transcription terminati 96.9 9E-05 3.1E-09 81.5 -1.1 33 77-109 166-198 (422)
214 2gj8_A MNME, tRNA modification 96.9 0.00076 2.6E-08 65.5 5.4 27 83-109 2-28 (172)
215 2p67_A LAO/AO transport system 96.9 8.1E-05 2.8E-09 81.4 -1.9 50 73-124 44-93 (341)
216 1l8q_A Chromosomal replication 96.9 0.0018 6.3E-08 69.6 8.6 46 214-259 96-142 (324)
217 3h4m_A Proteasome-activating n 96.9 0.0015 5.1E-08 68.7 7.7 27 83-109 49-75 (285)
218 3m6a_A ATP-dependent protease 96.9 0.00017 5.9E-09 83.8 0.2 48 73-123 97-144 (543)
219 4eaq_A DTMP kinase, thymidylat 96.8 0.00049 1.7E-08 70.8 3.1 37 74-110 12-51 (229)
220 2b8t_A Thymidine kinase; deoxy 96.8 0.0018 6.3E-08 66.3 7.2 53 216-273 89-150 (223)
221 2w58_A DNAI, primosome compone 96.8 0.0014 4.8E-08 65.2 6.1 24 86-109 55-78 (202)
222 1m2o_B GTP-binding protein SAR 96.8 0.0011 3.8E-08 65.3 5.3 35 73-108 12-46 (190)
223 2www_A Methylmalonic aciduria 96.7 0.00034 1.2E-08 76.7 1.4 41 83-125 72-112 (349)
224 3qks_A DNA double-strand break 96.7 0.00073 2.5E-08 68.1 3.7 33 76-109 15-47 (203)
225 3bgw_A DNAB-like replicative h 96.7 0.0026 8.9E-08 72.0 8.7 36 73-108 185-220 (444)
226 2pez_A Bifunctional 3'-phospho 96.7 0.00076 2.6E-08 66.0 3.5 40 83-125 3-44 (179)
227 1cke_A CK, MSSA, protein (cyti 96.7 0.00074 2.5E-08 68.4 3.4 56 85-140 5-73 (227)
228 3bos_A Putative DNA replicatio 96.7 0.00085 2.9E-08 68.0 3.6 44 215-258 103-148 (242)
229 2qag_A Septin-2, protein NEDD5 96.6 6.3E-05 2.1E-09 83.0 -5.5 45 47-109 17-61 (361)
230 2i1q_A DNA repair and recombin 96.6 0.0053 1.8E-07 66.1 9.7 34 74-107 86-120 (322)
231 2qor_A Guanylate kinase; phosp 96.6 0.0009 3.1E-08 67.1 3.2 28 82-109 9-36 (204)
232 3d8b_A Fidgetin-like protein 1 96.6 0.011 3.8E-07 64.6 12.1 27 83-109 115-141 (357)
233 1y63_A LMAJ004144AAA protein; 96.6 0.00091 3.1E-08 66.0 3.0 32 77-108 2-33 (184)
234 2wji_A Ferrous iron transport 96.5 0.0026 9E-08 61.0 5.9 23 87-109 5-27 (165)
235 1f6b_A SAR1; gtpases, N-termin 96.5 0.00054 1.8E-08 68.2 0.9 35 73-108 14-48 (198)
236 1m7g_A Adenylylsulfate kinase; 96.5 0.00062 2.1E-08 68.7 1.2 42 81-124 21-64 (211)
237 3auy_A DNA double-strand break 96.5 0.0026 9E-08 70.1 6.1 32 74-106 15-46 (371)
238 2qz4_A Paraplegin; AAA+, SPG7, 96.4 0.0091 3.1E-07 61.5 9.8 26 84-109 38-63 (262)
239 2if2_A Dephospho-COA kinase; a 96.4 0.0014 4.7E-08 65.4 3.1 21 87-107 3-23 (204)
240 3t61_A Gluconokinase; PSI-biol 96.3 0.00083 2.8E-08 67.1 0.8 25 85-109 18-42 (202)
241 2wjg_A FEOB, ferrous iron tran 96.2 0.0033 1.1E-07 61.1 4.6 22 87-108 9-30 (188)
242 2ga8_A Hypothetical 39.9 kDa p 96.2 0.00059 2E-08 74.6 -1.0 37 73-109 10-48 (359)
243 1xwi_A SKD1 protein; VPS4B, AA 96.2 0.048 1.7E-06 58.7 14.1 27 83-109 43-69 (322)
244 1xp8_A RECA protein, recombina 96.1 0.055 1.9E-06 59.4 14.5 34 74-107 61-96 (366)
245 1q57_A DNA primase/helicase; d 96.1 0.047 1.6E-06 62.5 14.5 35 73-107 230-264 (503)
246 3cmw_A Protein RECA, recombina 96.1 0.014 4.9E-07 75.3 11.0 29 81-109 728-756 (1706)
247 2ffh_A Protein (FFH); SRP54, s 96.1 0.0014 4.7E-08 73.7 1.5 47 76-126 91-137 (425)
248 2p5t_B PEZT; postsegregational 96.1 0.0014 4.7E-08 68.2 1.3 41 81-125 28-68 (253)
249 2yvu_A Probable adenylyl-sulfa 96.1 0.0028 9.4E-08 62.3 3.4 27 83-109 11-37 (186)
250 2v1u_A Cell division control p 96.1 0.0042 1.5E-07 67.6 5.1 27 83-109 42-68 (387)
251 1np6_A Molybdopterin-guanine d 96.1 0.0031 1.1E-07 62.0 3.6 38 86-123 7-45 (174)
252 3cm0_A Adenylate kinase; ATP-b 96.0 0.0028 9.6E-08 62.0 3.2 26 83-108 2-27 (186)
253 1qhx_A CPT, protein (chloramph 95.9 0.0042 1.4E-07 60.2 3.8 25 85-109 3-27 (178)
254 3kb2_A SPBC2 prophage-derived 95.9 0.0039 1.3E-07 59.9 3.4 23 87-109 3-25 (173)
255 1sxj_C Activator 1 40 kDa subu 95.9 0.0009 3.1E-08 72.6 -1.4 38 72-109 31-70 (340)
256 1q3t_A Cytidylate kinase; nucl 95.8 0.0046 1.6E-07 63.4 3.5 28 82-109 13-40 (236)
257 2ohf_A Protein OLA1, GTP-bindi 95.8 0.0039 1.3E-07 69.2 3.0 43 81-123 18-69 (396)
258 1lv7_A FTSH; alpha/beta domain 95.8 0.0032 1.1E-07 65.2 2.3 33 75-109 37-69 (257)
259 2zej_A Dardarin, leucine-rich 95.7 0.0046 1.6E-07 60.4 3.0 23 87-109 4-26 (184)
260 1j8m_F SRP54, signal recogniti 95.7 0.0012 4E-08 70.8 -1.5 46 76-124 89-135 (297)
261 1kht_A Adenylate kinase; phosp 95.7 0.0058 2E-07 59.7 3.7 25 85-109 3-27 (192)
262 2r8r_A Sensor protein; KDPD, P 95.6 0.006 2.1E-07 62.4 3.4 73 213-292 81-175 (228)
263 3r20_A Cytidylate kinase; stru 95.6 0.0062 2.1E-07 62.8 3.4 25 85-109 9-33 (233)
264 2rhm_A Putative kinase; P-loop 95.5 0.0058 2E-07 59.9 3.0 26 84-109 4-29 (193)
265 2ze6_A Isopentenyl transferase 95.5 0.0065 2.2E-07 63.2 3.3 24 86-109 2-25 (253)
266 3lw7_A Adenylate kinase relate 95.4 0.0073 2.5E-07 57.7 3.3 19 87-105 3-21 (179)
267 3trf_A Shikimate kinase, SK; a 95.4 0.0085 2.9E-07 58.5 3.6 26 84-109 4-29 (185)
268 1ex7_A Guanylate kinase; subst 95.3 0.0078 2.7E-07 59.8 3.2 23 87-109 3-25 (186)
269 3io5_A Recombination and repai 95.3 0.01 3.5E-07 63.8 4.3 27 80-107 24-51 (333)
270 3vfd_A Spastin; ATPase, microt 95.3 0.096 3.3E-06 57.7 12.3 27 83-109 146-172 (389)
271 1vht_A Dephospho-COA kinase; s 95.3 0.0088 3E-07 60.2 3.5 23 85-107 4-26 (218)
272 1xx6_A Thymidine kinase; NESG, 95.3 0.015 5.1E-07 58.0 5.0 53 216-273 81-142 (191)
273 3iij_A Coilin-interacting nucl 95.2 0.0085 2.9E-07 58.3 3.1 25 84-108 10-34 (180)
274 2jaq_A Deoxyguanosine kinase; 95.2 0.0092 3.2E-07 58.9 3.4 23 87-109 2-24 (205)
275 2v54_A DTMP kinase, thymidylat 95.2 0.01 3.6E-07 58.7 3.7 26 84-109 3-28 (204)
276 4b4t_J 26S protease regulatory 95.2 0.098 3.3E-06 58.0 11.8 27 83-109 180-206 (405)
277 2plr_A DTMP kinase, probable t 95.2 0.01 3.6E-07 58.9 3.7 26 84-109 3-28 (213)
278 1ly1_A Polynucleotide kinase; 95.2 0.01 3.5E-07 57.3 3.4 22 86-107 3-24 (181)
279 2wwf_A Thymidilate kinase, put 95.1 0.011 3.9E-07 58.8 3.5 27 83-109 8-34 (212)
280 1via_A Shikimate kinase; struc 95.1 0.01 3.6E-07 57.5 3.2 23 87-109 6-28 (175)
281 3cmw_A Protein RECA, recombina 95.1 0.19 6.5E-06 65.1 15.5 153 74-281 370-558 (1706)
282 2qp9_X Vacuolar protein sortin 95.1 0.053 1.8E-06 59.2 9.2 27 83-109 82-108 (355)
283 3ihw_A Centg3; RAS, centaurin, 95.0 0.024 8.1E-07 55.4 5.6 22 87-108 22-43 (184)
284 2c95_A Adenylate kinase 1; tra 95.0 0.012 4.2E-07 57.7 3.5 26 84-109 8-33 (196)
285 1gvn_B Zeta; postsegregational 95.0 0.01 3.5E-07 63.0 3.1 35 84-122 32-66 (287)
286 3cmu_A Protein RECA, recombina 95.0 0.058 2E-06 70.7 10.4 153 74-281 370-558 (2050)
287 1gtv_A TMK, thymidylate kinase 94.9 0.0064 2.2E-07 60.7 1.2 23 87-109 2-24 (214)
288 1nn5_A Similar to deoxythymidy 94.9 0.013 4.5E-07 58.4 3.5 27 83-109 7-33 (215)
289 1uf9_A TT1252 protein; P-loop, 94.9 0.013 4.6E-07 57.8 3.4 24 85-108 8-31 (203)
290 1tev_A UMP-CMP kinase; ploop, 94.9 0.014 4.9E-07 56.9 3.6 24 85-108 3-26 (196)
291 1nks_A Adenylate kinase; therm 94.9 0.013 4.4E-07 57.2 3.2 23 87-109 3-25 (194)
292 3k53_A Ferrous iron transport 94.8 0.012 4E-07 61.7 3.0 23 87-109 5-27 (271)
293 2j9r_A Thymidine kinase; TK1, 94.8 0.055 1.9E-06 54.8 7.7 53 216-273 101-162 (214)
294 3co5_A Putative two-component 94.7 0.041 1.4E-06 51.7 6.2 42 216-258 75-116 (143)
295 4dcu_A GTP-binding protein ENG 94.7 0.046 1.6E-06 61.8 7.7 54 202-259 88-142 (456)
296 1xjc_A MOBB protein homolog; s 94.6 0.017 5.6E-07 56.6 3.3 24 86-109 5-28 (169)
297 1aky_A Adenylate kinase; ATP:A 94.6 0.018 6.3E-07 58.0 3.8 26 84-109 3-28 (220)
298 2bwj_A Adenylate kinase 5; pho 94.6 0.014 4.8E-07 57.4 2.7 27 83-109 10-36 (199)
299 2vli_A Antibiotic resistance p 94.6 0.013 4.5E-07 56.8 2.4 26 84-109 4-29 (183)
300 2ged_A SR-beta, signal recogni 94.5 0.016 5.6E-07 56.4 3.0 24 86-109 49-72 (193)
301 1z2a_A RAS-related protein RAB 94.5 0.017 5.8E-07 54.5 3.0 23 87-109 7-29 (168)
302 1jal_A YCHF protein; nucleotid 94.5 0.029 9.9E-07 61.5 5.2 38 85-122 2-48 (363)
303 2z0h_A DTMP kinase, thymidylat 94.5 0.019 6.6E-07 56.3 3.4 23 87-109 2-24 (197)
304 2nzj_A GTP-binding protein REM 94.5 0.019 6.6E-07 54.6 3.3 23 87-109 6-28 (175)
305 2erx_A GTP-binding protein DI- 94.4 0.02 6.8E-07 54.2 3.3 22 87-108 5-26 (172)
306 3ake_A Cytidylate kinase; CMP 94.4 0.019 6.6E-07 56.8 3.2 23 87-109 4-26 (208)
307 3q72_A GTP-binding protein RAD 94.4 0.016 5.5E-07 54.7 2.5 23 87-109 4-26 (166)
308 1zd8_A GTP:AMP phosphotransfer 94.4 0.021 7.1E-07 57.9 3.4 26 84-109 6-31 (227)
309 1kao_A RAP2A; GTP-binding prot 94.4 0.02 6.7E-07 53.8 3.0 23 87-109 5-27 (167)
310 2dyk_A GTP-binding protein; GT 94.3 0.02 6.9E-07 53.7 3.0 23 87-109 3-25 (161)
311 2ce2_X GTPase HRAS; signaling 94.3 0.019 6.4E-07 53.8 2.8 23 87-109 5-27 (166)
312 1u8z_A RAS-related protein RAL 94.3 0.02 6.9E-07 53.8 3.0 23 87-109 6-28 (168)
313 3q85_A GTP-binding protein REM 94.3 0.022 7.5E-07 54.0 3.2 23 87-109 4-26 (169)
314 2cdn_A Adenylate kinase; phosp 94.3 0.025 8.7E-07 56.0 3.8 26 84-109 19-44 (201)
315 1ko7_A HPR kinase/phosphatase; 94.2 0.03 1E-06 60.1 4.5 36 72-108 132-167 (314)
316 1z0j_A RAB-22, RAS-related pro 94.2 0.022 7.4E-07 53.9 3.0 23 87-109 8-30 (170)
317 3fb4_A Adenylate kinase; psych 94.2 0.023 7.9E-07 56.9 3.4 22 87-108 2-23 (216)
318 1z08_A RAS-related protein RAB 94.2 0.022 7.6E-07 53.9 3.0 23 87-109 8-30 (170)
319 1ek0_A Protein (GTP-binding pr 94.2 0.022 7.6E-07 53.7 3.0 23 87-109 5-27 (170)
320 1g16_A RAS-related protein SEC 94.2 0.021 7.1E-07 54.0 2.8 23 87-109 5-27 (170)
321 3tw8_B RAS-related protein RAB 94.1 0.021 7.1E-07 54.6 2.7 23 87-109 11-33 (181)
322 1c1y_A RAS-related protein RAP 94.1 0.023 7.8E-07 53.5 3.0 23 87-109 5-27 (167)
323 3b1v_A Ferrous iron uptake tra 94.1 0.025 8.5E-07 59.6 3.5 23 87-109 5-27 (272)
324 1wms_A RAB-9, RAB9, RAS-relate 94.1 0.023 7.9E-07 54.2 3.0 23 87-109 9-31 (177)
325 3lxw_A GTPase IMAP family memb 94.1 0.023 8E-07 58.7 3.2 23 87-109 23-45 (247)
326 1ky3_A GTP-binding protein YPT 94.1 0.024 8E-07 54.3 3.0 23 87-109 10-32 (182)
327 2pbr_A DTMP kinase, thymidylat 94.1 0.026 8.8E-07 55.1 3.4 23 87-109 2-24 (195)
328 1zuh_A Shikimate kinase; alpha 94.1 0.028 9.5E-07 54.0 3.5 25 85-109 7-31 (168)
329 1e6c_A Shikimate kinase; phosp 94.1 0.023 7.8E-07 54.6 2.9 24 86-109 3-26 (173)
330 1svi_A GTP-binding protein YSX 94.1 0.022 7.6E-07 55.5 2.8 23 86-108 24-46 (195)
331 1fzq_A ADP-ribosylation factor 94.0 0.02 7E-07 55.6 2.5 22 87-108 18-39 (181)
332 3dl0_A Adenylate kinase; phosp 94.0 0.027 9.2E-07 56.5 3.4 23 87-109 2-24 (216)
333 2lkc_A Translation initiation 94.0 0.032 1.1E-06 53.3 3.8 25 85-109 8-32 (178)
334 2fn4_A P23, RAS-related protei 94.0 0.024 8E-07 54.2 2.8 23 87-109 11-33 (181)
335 1zak_A Adenylate kinase; ATP:A 94.0 0.023 7.9E-07 57.3 2.9 26 84-109 4-29 (222)
336 2iyv_A Shikimate kinase, SK; t 94.0 0.024 8.2E-07 55.2 2.8 24 86-109 3-26 (184)
337 2pt5_A Shikimate kinase, SK; a 94.0 0.03 1E-06 53.5 3.4 23 87-109 2-24 (168)
338 3pqc_A Probable GTP-binding pr 93.9 0.024 8.2E-07 55.0 2.8 23 87-109 25-47 (195)
339 1ukz_A Uridylate kinase; trans 93.9 0.029 9.8E-07 55.6 3.4 25 85-109 15-39 (203)
340 3a4m_A L-seryl-tRNA(SEC) kinas 93.9 0.03 1E-06 58.2 3.7 25 84-108 3-27 (260)
341 1r2q_A RAS-related protein RAB 93.9 0.027 9.2E-07 53.1 3.0 23 87-109 8-30 (170)
342 3clv_A RAB5 protein, putative; 93.9 0.027 9.3E-07 54.8 3.0 23 87-109 9-31 (208)
343 1qf9_A UMP/CMP kinase, protein 93.9 0.029 1E-06 54.6 3.3 25 85-109 6-30 (194)
344 4dsu_A GTPase KRAS, isoform 2B 93.9 0.027 9.4E-07 54.3 3.0 23 87-109 6-28 (189)
345 2cxx_A Probable GTP-binding pr 93.9 0.026 8.8E-07 54.6 2.8 23 87-109 3-25 (190)
346 2hxs_A RAB-26, RAS-related pro 93.9 0.03 1E-06 53.5 3.3 23 87-109 8-30 (178)
347 1upt_A ARL1, ADP-ribosylation 93.8 0.029 9.8E-07 53.2 3.0 22 87-108 9-30 (171)
348 3dm5_A SRP54, signal recogniti 93.8 0.45 1.5E-05 53.4 13.1 26 84-109 99-124 (443)
349 2oil_A CATX-8, RAS-related pro 93.8 0.029 9.8E-07 54.7 3.0 23 87-109 27-49 (193)
350 3bc1_A RAS-related protein RAB 93.8 0.029 9.9E-07 54.2 3.0 23 87-109 13-35 (195)
351 1r8s_A ADP-ribosylation factor 93.8 0.03 1E-06 52.7 3.0 21 88-108 3-23 (164)
352 3tlx_A Adenylate kinase 2; str 93.7 0.035 1.2E-06 57.2 3.6 25 84-108 28-52 (243)
353 4ag6_A VIRB4 ATPase, type IV s 93.7 0.024 8.1E-07 62.7 2.5 36 84-121 34-69 (392)
354 2y8e_A RAB-protein 6, GH09086P 93.6 0.03 1E-06 53.4 2.8 23 87-109 16-38 (179)
355 2orv_A Thymidine kinase; TP4A 93.6 0.2 6.9E-06 51.3 9.0 53 215-273 89-150 (234)
356 2a9k_A RAS-related protein RAL 93.6 0.032 1.1E-06 53.6 3.0 23 87-109 20-42 (187)
357 2g6b_A RAS-related protein RAB 93.6 0.033 1.1E-06 53.4 3.0 23 87-109 12-34 (180)
358 1z0f_A RAB14, member RAS oncog 93.6 0.033 1.1E-06 53.1 3.0 23 87-109 17-39 (179)
359 3t1o_A Gliding protein MGLA; G 93.6 0.033 1.1E-06 54.1 3.0 23 87-109 16-38 (198)
360 1moz_A ARL1, ADP-ribosylation 93.6 0.021 7.1E-07 55.0 1.5 22 86-107 19-40 (183)
361 1wf3_A GTP-binding protein; GT 93.6 0.036 1.2E-06 59.2 3.5 23 87-109 9-31 (301)
362 1uj2_A Uridine-cytidine kinase 93.5 0.036 1.2E-06 57.2 3.4 24 86-109 23-46 (252)
363 3con_A GTPase NRAS; structural 93.5 0.034 1.2E-06 54.0 3.0 23 87-109 23-45 (190)
364 2efe_B Small GTP-binding prote 93.5 0.035 1.2E-06 53.2 3.0 23 87-109 14-36 (181)
365 2qmh_A HPR kinase/phosphorylas 93.4 0.055 1.9E-06 54.2 4.4 34 74-108 24-57 (205)
366 2grj_A Dephospho-COA kinase; T 93.4 0.04 1.4E-06 54.8 3.4 24 85-108 12-35 (192)
367 3t5d_A Septin-7; GTP-binding p 93.4 0.03 1E-06 58.6 2.6 23 87-109 10-32 (274)
368 3iby_A Ferrous iron transport 93.4 0.035 1.2E-06 57.8 3.0 23 87-109 3-25 (256)
369 1nrj_B SR-beta, signal recogni 93.4 0.036 1.2E-06 55.2 3.0 23 87-109 14-36 (218)
370 2bme_A RAB4A, RAS-related prot 93.4 0.035 1.2E-06 53.6 2.8 23 87-109 12-34 (186)
371 1jbk_A CLPB protein; beta barr 93.4 0.046 1.6E-06 52.5 3.6 27 83-109 41-67 (195)
372 3iev_A GTP-binding protein ERA 93.4 0.04 1.4E-06 58.9 3.5 23 87-109 12-34 (308)
373 2bov_A RAla, RAS-related prote 93.3 0.037 1.3E-06 54.3 3.0 23 87-109 16-38 (206)
374 1vg8_A RAS-related protein RAB 93.3 0.038 1.3E-06 54.3 3.0 23 87-109 10-32 (207)
375 3be4_A Adenylate kinase; malar 93.3 0.042 1.5E-06 55.3 3.4 25 85-109 5-29 (217)
376 2xb4_A Adenylate kinase; ATP-b 93.3 0.043 1.5E-06 55.6 3.4 23 87-109 2-24 (223)
377 2gf9_A RAS-related protein RAB 93.3 0.039 1.3E-06 53.7 3.0 23 87-109 24-46 (189)
378 3a8t_A Adenylate isopentenyltr 93.3 0.063 2.2E-06 58.1 4.9 26 84-109 39-64 (339)
379 3tkl_A RAS-related protein RAB 93.2 0.04 1.4E-06 53.6 3.0 23 87-109 18-40 (196)
380 2gf0_A GTP-binding protein DI- 93.2 0.038 1.3E-06 53.9 2.8 23 87-109 10-32 (199)
381 1ksh_A ARF-like protein 2; sma 93.2 0.039 1.3E-06 53.3 2.9 25 85-109 18-42 (186)
382 2xtp_A GTPase IMAP family memb 93.2 0.039 1.3E-06 57.0 3.0 23 87-109 24-46 (260)
383 3cbq_A GTP-binding protein REM 93.2 0.031 1.1E-06 55.1 2.2 22 87-108 25-46 (195)
384 1m7b_A RND3/RHOE small GTP-bin 93.2 0.038 1.3E-06 53.5 2.8 23 87-109 9-31 (184)
385 2fg5_A RAB-22B, RAS-related pr 93.2 0.039 1.3E-06 54.0 2.8 23 87-109 25-47 (192)
386 3kkq_A RAS-related protein M-R 93.2 0.042 1.4E-06 52.9 3.0 23 87-109 20-42 (183)
387 4fcw_A Chaperone protein CLPB; 93.2 0.043 1.5E-06 58.0 3.3 25 85-109 47-71 (311)
388 2dby_A GTP-binding protein; GD 93.1 0.039 1.3E-06 60.7 3.0 21 88-108 4-24 (368)
389 1mh1_A RAC1; GTP-binding, GTPa 93.1 0.043 1.5E-06 52.7 3.0 22 87-108 7-28 (186)
390 1zbd_A Rabphilin-3A; G protein 93.1 0.046 1.6E-06 53.7 3.2 23 87-109 10-32 (203)
391 3umf_A Adenylate kinase; rossm 93.1 0.049 1.7E-06 55.4 3.4 27 83-109 27-53 (217)
392 3bwd_D RAC-like GTP-binding pr 93.1 0.053 1.8E-06 51.9 3.6 22 87-108 10-31 (182)
393 1z06_A RAS-related protein RAB 93.1 0.045 1.5E-06 53.2 3.0 22 87-108 22-43 (189)
394 2f6r_A COA synthase, bifunctio 93.0 0.045 1.5E-06 57.7 3.2 22 86-107 76-97 (281)
395 3a1s_A Iron(II) transport prot 93.0 0.047 1.6E-06 56.8 3.3 23 87-109 7-29 (258)
396 2cjw_A GTP-binding protein GEM 93.0 0.045 1.6E-06 53.8 3.0 22 87-108 8-29 (192)
397 3oes_A GTPase rhebl1; small GT 93.0 0.043 1.5E-06 54.1 2.8 23 87-109 26-48 (201)
398 3cmu_A Protein RECA, recombina 93.0 0.18 6.1E-06 66.1 9.2 36 74-109 719-756 (2050)
399 1e4v_A Adenylate kinase; trans 92.9 0.049 1.7E-06 54.6 3.2 23 87-109 2-24 (214)
400 2il1_A RAB12; G-protein, GDP, 92.9 0.043 1.5E-06 53.7 2.7 23 87-109 28-50 (192)
401 2a5j_A RAS-related protein RAB 92.9 0.048 1.6E-06 53.2 3.0 23 87-109 23-45 (191)
402 3dz8_A RAS-related protein RAB 92.9 0.045 1.5E-06 53.4 2.8 23 87-109 25-47 (191)
403 3t5g_A GTP-binding protein RHE 92.9 0.045 1.5E-06 52.5 2.8 22 87-108 8-29 (181)
404 3i8s_A Ferrous iron transport 92.9 0.046 1.6E-06 57.4 3.0 23 87-109 5-27 (274)
405 4dhe_A Probable GTP-binding pr 92.9 0.027 9.3E-07 56.3 1.2 24 86-109 30-53 (223)
406 3llu_A RAS-related GTP-binding 92.9 0.047 1.6E-06 53.6 2.9 23 87-109 22-44 (196)
407 1ak2_A Adenylate kinase isoenz 92.9 0.06 2E-06 54.8 3.7 26 84-109 15-40 (233)
408 2o52_A RAS-related protein RAB 92.9 0.049 1.7E-06 53.8 3.0 23 87-109 27-49 (200)
409 1zj6_A ADP-ribosylation factor 92.8 0.049 1.7E-06 52.8 3.0 22 87-108 18-39 (187)
410 1zd9_A ADP-ribosylation factor 92.8 0.05 1.7E-06 53.0 3.0 23 87-109 24-46 (188)
411 1jwy_B Dynamin A GTPase domain 92.8 0.05 1.7E-06 57.8 3.2 23 87-109 26-48 (315)
412 2bcg_Y Protein YP2, GTP-bindin 92.8 0.046 1.6E-06 53.9 2.8 23 87-109 10-32 (206)
413 1x3s_A RAS-related protein RAB 92.8 0.05 1.7E-06 52.7 3.0 23 87-109 17-39 (195)
414 2wsm_A Hydrogenase expression/ 92.8 0.05 1.7E-06 54.4 3.0 24 86-109 31-54 (221)
415 2atv_A RERG, RAS-like estrogen 92.8 0.051 1.8E-06 53.2 3.0 23 87-109 30-52 (196)
416 2h57_A ADP-ribosylation factor 92.8 0.038 1.3E-06 53.8 2.1 23 87-109 23-45 (190)
417 3reg_A RHO-like small GTPase; 92.8 0.051 1.8E-06 53.0 3.0 23 87-109 25-47 (194)
418 3v9p_A DTMP kinase, thymidylat 92.8 0.045 1.5E-06 56.0 2.6 28 82-109 22-49 (227)
419 3cph_A RAS-related protein SEC 92.7 0.051 1.7E-06 53.7 3.0 24 86-109 21-44 (213)
420 2qu8_A Putative nucleolar GTP- 92.7 0.05 1.7E-06 55.0 2.9 22 87-108 31-52 (228)
421 2p5s_A RAS and EF-hand domain 92.7 0.052 1.8E-06 53.4 3.0 24 86-109 29-52 (199)
422 2h17_A ADP-ribosylation factor 92.7 0.046 1.6E-06 52.8 2.5 22 87-108 23-44 (181)
423 1ltq_A Polynucleotide kinase; 92.7 0.057 1.9E-06 57.0 3.4 23 86-108 3-25 (301)
424 4bas_A ADP-ribosylation factor 92.7 0.05 1.7E-06 53.0 2.8 23 87-109 19-41 (199)
425 2f7s_A C25KG, RAS-related prot 92.7 0.057 2E-06 53.7 3.3 23 87-109 27-49 (217)
426 4edh_A DTMP kinase, thymidylat 92.7 0.064 2.2E-06 54.3 3.6 27 83-109 4-30 (213)
427 2ew1_A RAS-related protein RAB 92.7 0.05 1.7E-06 54.1 2.8 23 87-109 28-50 (201)
428 1a7j_A Phosphoribulokinase; tr 92.7 0.029 9.9E-07 59.6 1.1 25 85-109 5-29 (290)
429 2iwr_A Centaurin gamma 1; ANK 92.6 0.045 1.6E-06 52.4 2.3 23 87-109 9-31 (178)
430 2p65_A Hypothetical protein PF 92.6 0.055 1.9E-06 51.9 2.9 26 84-109 42-67 (187)
431 2fv8_A H6, RHO-related GTP-bin 92.5 0.054 1.8E-06 53.7 2.8 23 87-109 27-49 (207)
432 2q3h_A RAS homolog gene family 92.5 0.063 2.2E-06 52.6 3.2 24 86-109 21-44 (201)
433 3c5c_A RAS-like protein 12; GD 92.4 0.061 2.1E-06 52.4 3.0 23 87-109 23-45 (187)
434 1sky_E F1-ATPase, F1-ATP synth 92.4 0.072 2.4E-06 60.2 3.9 35 74-109 141-175 (473)
435 3sr0_A Adenylate kinase; phosp 92.4 0.069 2.3E-06 53.8 3.4 23 87-109 2-24 (206)
436 2j1l_A RHO-related GTP-binding 92.4 0.062 2.1E-06 53.7 3.0 22 87-108 36-57 (214)
437 2aka_B Dynamin-1; fusion prote 92.4 0.055 1.9E-06 56.9 2.8 23 87-109 28-50 (299)
438 3zvl_A Bifunctional polynucleo 92.4 0.063 2.1E-06 60.0 3.4 26 83-108 256-281 (416)
439 1gwn_A RHO-related GTP-binding 92.4 0.057 2E-06 53.8 2.8 23 87-109 30-52 (205)
440 3lv8_A DTMP kinase, thymidylat 92.3 0.071 2.4E-06 54.9 3.5 26 84-109 26-51 (236)
441 3d3q_A TRNA delta(2)-isopenten 92.3 0.066 2.3E-06 58.1 3.4 24 86-109 8-31 (340)
442 2zts_A Putative uncharacterize 92.3 0.089 3E-06 53.4 4.2 45 214-258 133-182 (251)
443 2fh5_B SR-beta, signal recogni 92.3 0.064 2.2E-06 53.2 3.0 23 87-109 9-31 (214)
444 2fu5_C RAS-related protein RAB 92.2 0.044 1.5E-06 52.8 1.6 22 87-108 10-31 (183)
445 2h92_A Cytidylate kinase; ross 92.2 0.06 2.1E-06 53.9 2.7 25 85-109 3-27 (219)
446 2gco_A H9, RHO-related GTP-bin 92.1 0.063 2.2E-06 52.9 2.8 23 87-109 27-49 (201)
447 3exa_A TRNA delta(2)-isopenten 92.1 0.081 2.8E-06 56.7 3.7 25 85-109 3-27 (322)
448 2b6h_A ADP-ribosylation factor 92.1 0.06 2E-06 52.8 2.5 22 86-107 30-51 (192)
449 3def_A T7I23.11 protein; chlor 92.1 0.068 2.3E-06 55.5 3.0 23 87-109 38-60 (262)
450 1njg_A DNA polymerase III subu 92.0 0.089 3.1E-06 52.3 3.7 43 215-259 125-167 (250)
451 3tqf_A HPR(Ser) kinase; transf 92.0 0.12 4.2E-06 50.5 4.4 33 74-107 6-38 (181)
452 1h65_A Chloroplast outer envel 91.9 0.071 2.4E-06 55.6 3.0 23 87-109 41-63 (270)
453 3crm_A TRNA delta(2)-isopenten 91.9 0.081 2.8E-06 57.0 3.4 24 86-109 6-29 (323)
454 4tmk_A Protein (thymidylate ki 91.9 0.088 3E-06 53.3 3.5 26 84-109 2-27 (213)
455 2atx_A Small GTP binding prote 91.9 0.072 2.5E-06 51.9 2.8 23 87-109 20-42 (194)
456 3tmk_A Thymidylate kinase; pho 91.9 0.087 3E-06 53.5 3.5 27 84-110 4-30 (216)
457 2g3y_A GTP-binding protein GEM 91.8 0.083 2.9E-06 53.2 3.3 22 87-108 39-60 (211)
458 2ocp_A DGK, deoxyguanosine kin 91.8 0.09 3.1E-06 53.7 3.5 25 85-109 2-26 (241)
459 4djt_A GTP-binding nuclear pro 91.7 0.042 1.4E-06 54.7 0.9 22 87-108 13-34 (218)
460 3ld9_A DTMP kinase, thymidylat 91.6 0.1 3.4E-06 53.3 3.6 26 84-109 20-45 (223)
461 1p5z_B DCK, deoxycytidine kina 91.6 0.068 2.3E-06 55.5 2.4 27 83-109 22-48 (263)
462 3euj_A Chromosome partition pr 91.6 0.21 7.2E-06 56.7 6.5 71 196-273 377-464 (483)
463 3cpj_B GTP-binding protein YPT 91.5 0.088 3E-06 52.8 3.0 23 87-109 15-37 (223)
464 2hup_A RAS-related protein RAB 91.5 0.084 2.9E-06 52.1 2.8 23 87-109 31-53 (201)
465 2hf9_A Probable hydrogenase ni 91.4 0.091 3.1E-06 52.6 3.0 23 86-108 39-61 (226)
466 3cnl_A YLQF, putative uncharac 91.4 0.097 3.3E-06 54.7 3.2 24 86-109 100-123 (262)
467 2yc2_C IFT27, small RAB-relate 91.3 0.044 1.5E-06 53.8 0.5 22 87-108 22-43 (208)
468 2x77_A ADP-ribosylation factor 91.3 0.061 2.1E-06 52.2 1.5 21 87-107 24-44 (189)
469 1sxj_D Activator 1 41 kDa subu 91.2 0.034 1.2E-06 59.8 -0.5 42 216-259 133-174 (353)
470 4gzl_A RAS-related C3 botulinu 91.1 0.095 3.2E-06 51.9 2.8 23 86-108 31-53 (204)
471 3q3j_B RHO-related GTP-binding 91.0 0.11 3.6E-06 52.0 3.0 23 87-109 29-51 (214)
472 2j0v_A RAC-like GTP-binding pr 90.9 0.1 3.4E-06 51.7 2.8 23 87-109 11-33 (212)
473 3n70_A Transport activator; si 90.9 0.12 4.2E-06 48.4 3.2 42 216-259 76-117 (145)
474 3foz_A TRNA delta(2)-isopenten 90.8 0.13 4.4E-06 55.1 3.6 25 85-109 10-34 (316)
475 1ypw_A Transitional endoplasmi 90.8 0.041 1.4E-06 66.8 -0.3 32 78-109 504-535 (806)
476 2orw_A Thymidine kinase; TMTK, 90.6 0.14 4.9E-06 50.4 3.5 38 216-258 76-113 (184)
477 2vhj_A Ntpase P4, P4; non- hyd 90.4 0.14 4.9E-06 55.1 3.5 33 75-107 113-145 (331)
478 3eph_A TRNA isopentenyltransfe 90.4 0.14 4.6E-06 56.9 3.4 24 86-109 3-26 (409)
479 3syl_A Protein CBBX; photosynt 90.4 0.15 5E-06 53.9 3.5 26 84-109 66-91 (309)
480 2chg_A Replication factor C sm 90.2 0.14 4.9E-06 50.2 3.2 23 87-109 40-62 (226)
481 2r62_A Cell division protease 90.1 0.072 2.5E-06 55.1 0.9 22 88-109 47-68 (268)
482 3gmt_A Adenylate kinase; ssgci 90.1 0.16 5.5E-06 52.0 3.4 24 86-109 9-32 (230)
483 3pxi_A Negative regulator of g 89.8 0.61 2.1E-05 56.1 8.8 23 87-109 523-545 (758)
484 4a9a_A Ribosome-interacting GT 89.7 0.2 7E-06 55.1 4.1 39 87-125 74-121 (376)
485 1puj_A YLQF, conserved hypothe 89.6 0.18 6.2E-06 53.2 3.4 24 86-109 121-144 (282)
486 3t15_A Ribulose bisphosphate c 89.4 0.17 5.9E-06 53.5 3.2 25 85-109 36-60 (293)
487 1wxq_A GTP-binding protein; st 89.4 0.16 5.5E-06 56.3 3.0 78 172-265 180-260 (397)
488 2qgz_A Helicase loader, putati 89.4 0.2 7E-06 53.4 3.7 25 85-109 152-176 (308)
489 3uk6_A RUVB-like 2; hexameric 89.4 0.18 6.3E-06 54.5 3.5 27 83-109 68-94 (368)
490 3p32_A Probable GTPase RV1496/ 89.3 0.18 6.1E-06 55.0 3.3 26 84-109 78-103 (355)
491 1d2n_A N-ethylmaleimide-sensit 89.3 0.18 6.1E-06 52.4 3.1 26 83-108 62-87 (272)
492 1mky_A Probable GTP-binding pr 89.3 0.33 1.1E-05 54.4 5.5 23 87-109 3-25 (439)
493 2x2e_A Dynamin-1; nitration, h 89.2 0.12 4.1E-06 56.2 1.8 23 87-109 33-55 (353)
494 3eie_A Vacuolar protein sortin 89.2 0.21 7E-06 53.5 3.6 27 83-109 49-75 (322)
495 3th5_A RAS-related C3 botulinu 88.8 0.072 2.5E-06 52.5 0.0 21 87-107 32-52 (204)
496 3gj0_A GTP-binding nuclear pro 89.2 0.13 4.6E-06 51.3 2.0 22 87-108 17-39 (221)
497 2hjg_A GTP-binding protein ENG 89.1 0.16 5.5E-06 56.9 2.8 22 87-108 5-26 (436)
498 3r7w_A Gtpase1, GTP-binding pr 89.0 0.2 6.7E-06 53.4 3.2 23 86-108 4-26 (307)
499 1ofh_A ATP-dependent HSL prote 88.9 0.2 6.7E-06 52.6 3.2 25 85-109 50-74 (310)
500 3hws_A ATP-dependent CLP prote 88.6 0.21 7.2E-06 54.3 3.2 26 84-109 50-75 (363)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=6.9e-49 Score=432.57 Aligned_cols=225 Identities=29% Similarity=0.460 Sum_probs=200.1
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...|+++||+++|+.+. ....+|+||||+|++||+++|+||||||||||+|+|+|+++ +++|+|.++|++
T Consensus 22 ~~mi~v~~ls~~y~~~~--------~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~ 91 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGT--------RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQE 91 (366)
T ss_dssp -CCEEEEEEEEEEECSS--------SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred CceEEEEeEEEEeCCCC--------CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEE
Confidence 34699999999996421 12459999999999999999999999999999999999985 468999999999
Q ss_pred CCCc------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 125 VTTS------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 125 ~~~~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
+... ..++.+|||||++.+++.+||+||+.++...+ ..++++.+++++++|+.+||.+..++++. +
T Consensus 92 i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~~-----~ 163 (366)
T 3tui_C 92 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPS-----N 163 (366)
T ss_dssp CSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCTT-----T
T ss_pred CCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----h
Confidence 8642 13567999999999999999999999988764 35677788899999999999988877765 6
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++||+++. +.++||||++|++|++
T Consensus 164 LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~-~~~~aDrv~vl~~G~i 242 (366)
T 3tui_C 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDV-VKRICDCVAVISNGEL 242 (366)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHH-HHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999976 49999999999974 7889999999999999
Q ss_pred EEEcCccchhh
Q 003437 278 VYMGSPVALPA 288 (820)
Q Consensus 278 v~~G~~~~~~~ 288 (820)
++.|+++++..
T Consensus 243 v~~g~~~ev~~ 253 (366)
T 3tui_C 243 IEQDTVSEVFS 253 (366)
T ss_dssp EECCBHHHHHS
T ss_pred EEEcCHHHHHh
Confidence 99999988753
No 2
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=3.8e-48 Score=405.55 Aligned_cols=222 Identities=26% Similarity=0.417 Sum_probs=191.4
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|+++. ..+.+|+|||+++++||+++|+||||||||||||+|+|+++ +++|+|.++|+++..
T Consensus 2 l~~~~l~~~y~~~~--------~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~ 71 (235)
T 3tif_A 2 VKLKNVTKTYKMGE--------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTND 71 (235)
T ss_dssp EEEEEEEEEEEETT--------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTT
T ss_pred EEEEEEEEEeCCCC--------cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEccc
Confidence 89999999996421 12459999999999999999999999999999999999985 468999999999864
Q ss_pred cc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCC
Q 003437 128 SY-------MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEGRRGV 199 (820)
Q Consensus 128 ~~-------~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~L 199 (820)
.. .++.+|||+|++.+++.+||+||+.++...+.....+.++..+++.++++.+||.+. .++++. +|
T Consensus 72 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~L 146 (235)
T 3tif_A 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN-----QL 146 (235)
T ss_dssp CCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGG-----GS
T ss_pred CCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChh-----hC
Confidence 21 134599999999999999999999998765422234567777889999999999875 366654 69
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
||||||||+|||||+.+|++|||||||+|||+.++.+++++|++++++ |+|||++||+++ +..+||++++|++|+++
T Consensus 147 SgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~ 224 (235)
T 3tif_A 147 SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVE 224 (235)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999865 999999999996 34789999999999999
Q ss_pred EEcCccch
Q 003437 279 YMGSPVAL 286 (820)
Q Consensus 279 ~~G~~~~~ 286 (820)
..++++++
T Consensus 225 ~~~~~~~~ 232 (235)
T 3tif_A 225 REEKLRGF 232 (235)
T ss_dssp EEEECC--
T ss_pred EEcChhhh
Confidence 99988765
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=6e-48 Score=427.65 Aligned_cols=219 Identities=27% Similarity=0.455 Sum_probs=199.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+||||++++||+++|+||||||||||||+|+|+++ +++|+|.++|+++.
T Consensus 3 ~l~~~~l~~~yg~------------~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~~ 68 (381)
T 3rlf_A 3 SVQLQNVTKAWGE------------VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMN 68 (381)
T ss_dssp CEEEEEEEEEETT------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEeEEEEECC------------EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEECC
Confidence 4999999999954 349999999999999999999999999999999999985 46899999999986
Q ss_pred Cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 127 TS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 127 ~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
.. ..++.+|||+|++.++|.+||+||+.|+...+ ..++++.+++++++++.+||++..++++. +|||||||
T Consensus 69 ~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p~-----~LSGGqrQ 140 (381)
T 3rlf_A 69 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQ 140 (381)
T ss_dssp TCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCGG-----GSCHHHHH
T ss_pred CCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----HCCHHHHH
Confidence 43 23567999999999999999999999998765 35677888899999999999998887765 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
||+|||||+.+|++|||||||++||+..+.++.+.|+++.++ |.|+|++|||++ ++..+||||++|++|+++..|+++
T Consensus 141 RVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~ 219 (381)
T 3rlf_A 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPL 219 (381)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEEeCHH
Confidence 999999999999999999999999999999999999999765 999999999997 488899999999999999999999
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 220 ~l~~ 223 (381)
T 3rlf_A 220 ELYH 223 (381)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8754
No 4
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=4.3e-48 Score=413.61 Aligned_cols=221 Identities=26% Similarity=0.451 Sum_probs=195.3
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|+++ ..+|+||||+|++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++
T Consensus 6 ~~l~i~~ls~~y~~~-----------~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i 72 (275)
T 3gfo_A 6 YILKVEELNYNYSDG-----------THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEEECTTS-----------CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred cEEEEEEEEEEECCC-----------CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 469999999999532 249999999999999999999999999999999999985 4689999999998
Q ss_pred CC-----ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 003437 126 TT-----SYMKMVSSYVMQDDQ-LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 126 ~~-----~~~~~~~gyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~L 199 (820)
.. ...++.+|||+|++. .+..+||+||+.|+.... ..+.++..++++++++.+||++..++.++ +|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTH-----CL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBGG-----GS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcc-----cC
Confidence 42 124567999999862 334689999999987643 35677778899999999999988888775 69
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA-RTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
||||||||+|||||+.+|++|||||||+|||+.++..++++|++++ ++|+|||++||+++. +..+||+|++|++|+++
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~-~~~~~drv~~l~~G~i~ 223 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI-VPLYCDNVFVMKEGRVI 223 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS-GGGGCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH-HHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999997 569999999999985 77899999999999999
Q ss_pred EEcCccchhh
Q 003437 279 YMGSPVALPA 288 (820)
Q Consensus 279 ~~G~~~~~~~ 288 (820)
+.|+++++..
T Consensus 224 ~~g~~~~~~~ 233 (275)
T 3gfo_A 224 LQGNPKEVFA 233 (275)
T ss_dssp EEECHHHHTH
T ss_pred EECCHHHHhc
Confidence 9999988764
No 5
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3.8e-48 Score=426.48 Aligned_cols=219 Identities=29% Similarity=0.456 Sum_probs=195.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC-
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV- 125 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~- 125 (820)
.|+++||+++|++ +.+|+||||+|++||+++|+||||||||||||+|+|+++ +++|+|.++|+++
T Consensus 4 ~l~i~~ls~~y~~------------~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i~ 69 (359)
T 3fvq_A 4 ALHIGHLSKSFQN------------TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTIF 69 (359)
T ss_dssp CEEEEEEEEEETT------------EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEE
T ss_pred EEEEEeEEEEECC------------EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 4999999999954 349999999999999999999999999999999999985 4689999999987
Q ss_pred ---CC-ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 126 ---TT-SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 126 ---~~-~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
.. ...++.+|||+|++.+||.+||+||+.|+...+ ..++++.+++++++++.+||++..++++. +|||
T Consensus 70 ~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LSG 141 (359)
T 3fvq_A 70 SKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYPH-----ELSG 141 (359)
T ss_dssp SSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCGG-----GSCH
T ss_pred ccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCChh-----hCCH
Confidence 22 124567999999999999999999999986543 23456677899999999999998888775 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA-RTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
||||||+|||||+.+|++|||||||+|||+..+.++++.|+++. +.|.|+|++|||.+ ++..+||||++|++|+++..
T Consensus 142 Gq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~G~i~~~ 220 (359)
T 3fvq_A 142 GQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQGRILQT 220 (359)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999888875 46999999999997 48889999999999999999
Q ss_pred cCccchhh
Q 003437 281 GSPVALPA 288 (820)
Q Consensus 281 G~~~~~~~ 288 (820)
|+++++..
T Consensus 221 g~~~el~~ 228 (359)
T 3fvq_A 221 ASPHELYR 228 (359)
T ss_dssp ECHHHHHH
T ss_pred eCHHHHHh
Confidence 99988754
No 6
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=7.8e-48 Score=409.51 Aligned_cols=219 Identities=27% Similarity=0.455 Sum_probs=193.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+||||++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++.
T Consensus 6 ~l~i~~l~~~y~~------------~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~ 71 (262)
T 1b0u_A 6 KLHVIDLHKRYGG------------HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNIN 71 (262)
T ss_dssp CEEEEEEEEEETT------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred eEEEeeEEEEECC------------EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcc
Confidence 5999999999953 249999999999999999999999999999999999985 46899999999885
Q ss_pred C----------------ccccceEEEEccCCCCCCCCCHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cc
Q 003437 127 T----------------SYMKMVSSYVMQDDQLFPMLTVFETFMFAA-EVRLPPSISRDEKKKRVYELLDQLGLRSA-TH 188 (820)
Q Consensus 127 ~----------------~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~ 188 (820)
. ...++.+|||+|++.+++.+||+||+.++. ..+ ..+.++.+++++++++.+||.+. .+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~ 148 (262)
T 1b0u_A 72 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQG 148 (262)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred ccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhc
Confidence 1 123456999999999999999999999864 322 23455667789999999999988 78
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCE
Q 003437 189 TYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDR 268 (820)
Q Consensus 189 ~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 268 (820)
+.++ +|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++|+|||++||+++. +..+||+
T Consensus 149 ~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~-~~~~~d~ 222 (262)
T 1b0u_A 149 KYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF-ARHVSSH 222 (262)
T ss_dssp SCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHH-HHHHCSE
T ss_pred CCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCE
Confidence 7765 699999999999999999999999999999999999999999999998789999999999874 7789999
Q ss_pred EEEEeCCeEEEEcCccchhh
Q 003437 269 IIVLARGRLVYMGSPVALPA 288 (820)
Q Consensus 269 v~lL~~G~iv~~G~~~~~~~ 288 (820)
+++|++|++++.|+++++..
T Consensus 223 v~~l~~G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 223 VIFLHQGKIEEEGDPEQVFG 242 (262)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999887753
No 7
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.4e-47 Score=407.15 Aligned_cols=219 Identities=30% Similarity=0.509 Sum_probs=193.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+||||++++||+++|+||||||||||||+|+|+++ +++|+|.++|+++.
T Consensus 24 ~l~i~~l~~~y~~------------~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~ 89 (263)
T 2olj_A 24 MIDVHQLKKSFGS------------LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLK 89 (263)
T ss_dssp SEEEEEEEEEETT------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEESS
T ss_pred eEEEEeEEEEECC------------EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEECC
Confidence 5999999999953 249999999999999999999999999999999999985 46899999999884
Q ss_pred --Cc---cccceEEEEccCCCCCCCCCHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 003437 127 --TS---YMKMVSSYVMQDDQLFPMLTVFETFMFAA-EVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS 200 (820)
Q Consensus 127 --~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS 200 (820)
.. ..++.+|||+|++.+++.+||+||+.++. ..+ ..+.++..++++++++.+||.+..++.+. +||
T Consensus 90 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LS 161 (263)
T 2olj_A 90 AKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYPD-----SLS 161 (263)
T ss_dssp STTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSC
T ss_pred CccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCChh-----hCC
Confidence 11 23456999999999999999999999964 332 23455667789999999999988887765 699
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
|||||||+|||||+.+|++|||||||+|||+.++..++++|++++++|+|||++||+++. +..+||++++|++|++++.
T Consensus 162 gGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~-~~~~~d~v~~l~~G~i~~~ 240 (263)
T 2olj_A 162 GGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGF-AREVGDRVLFMDGGYIIEE 240 (263)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH-HHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999998779999999999874 7789999999999999999
Q ss_pred cCccchhh
Q 003437 281 GSPVALPA 288 (820)
Q Consensus 281 G~~~~~~~ 288 (820)
|+++++..
T Consensus 241 g~~~~~~~ 248 (263)
T 2olj_A 241 GKPEDLFD 248 (263)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHHh
Confidence 99887753
No 8
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3.3e-47 Score=395.69 Aligned_cols=213 Identities=31% Similarity=0.405 Sum_probs=189.1
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++.
T Consensus 4 ~l~~~~l~~~y~~------------~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (224)
T 2pcj_A 4 ILRAENIKKVIRG------------YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVD 69 (224)
T ss_dssp EEEEEEEEEEETT------------EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEeEEEEECC------------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 4999999999953 249999999999999999999999999999999999985 46899999999985
Q ss_pred Ccc------c-cceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 003437 127 TSY------M-KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 127 ~~~------~-~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~L 199 (820)
... . ++.++||+|++.+++.+||+||+.++...+ ..++++..++++++++.+||.+..++.++ +|
T Consensus 70 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~L 141 (224)
T 2pcj_A 70 YTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKPY-----EL 141 (224)
T ss_dssp SSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGG-----GS
T ss_pred CCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hC
Confidence 421 1 256899999999999999999999986543 23455566789999999999988887775 69
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++. + .+||++++|++|++++
T Consensus 142 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~-~-~~~d~v~~l~~G~i~~ 219 (224)
T 2pcj_A 142 SGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL-A-ELTHRTLEMKDGKVVG 219 (224)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-H-TTSSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-H-HhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999998779999999999874 5 7899999999999999
Q ss_pred EcCc
Q 003437 280 MGSP 283 (820)
Q Consensus 280 ~G~~ 283 (820)
.|+.
T Consensus 220 ~g~~ 223 (224)
T 2pcj_A 220 EITR 223 (224)
T ss_dssp EEEC
T ss_pred Eeee
Confidence 8863
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.7e-47 Score=402.58 Aligned_cols=220 Identities=29% Similarity=0.397 Sum_probs=195.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+||||++++||+++|+||||||||||||+|+|+++ +++|+|.++|+++.
T Consensus 15 ~l~i~~l~~~y~~------------~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~ 80 (256)
T 1vpl_A 15 AVVVKDLRKRIGK------------KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVV 80 (256)
T ss_dssp CEEEEEEEEEETT------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETT
T ss_pred eEEEEEEEEEECC------------EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 4999999999953 249999999999999999999999999999999999985 46899999999985
Q ss_pred Cc--cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 127 TS--YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 127 ~~--~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
.. ..++.+|||+|++.+++.+||+||+.+....+ ..+.++..++++++++.+||.+..++.++ .||||||
T Consensus 81 ~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~ 152 (256)
T 1vpl_A 81 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMV 152 (256)
T ss_dssp TCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHH
T ss_pred ccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCChh-----hCCHHHH
Confidence 42 23567999999999999999999999976543 23455556789999999999988888765 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
|||+||+||+.+|++|||||||+|||+.++..++++|++++++|+|||++||+++. +..+||++++|++|++++.|+++
T Consensus 153 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~-~~~~~d~v~~l~~G~i~~~g~~~ 231 (256)
T 1vpl_A 153 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLE-VEFLCDRIALIHNGTIVETGTVE 231 (256)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHH-HTTTCSEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH-HHHHCCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999998789999999999974 77889999999999999999988
Q ss_pred chhhh
Q 003437 285 ALPAH 289 (820)
Q Consensus 285 ~~~~~ 289 (820)
++...
T Consensus 232 ~~~~~ 236 (256)
T 1vpl_A 232 ELKER 236 (256)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87653
No 10
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=4.7e-47 Score=417.96 Aligned_cols=220 Identities=28% Similarity=0.448 Sum_probs=197.6
Q ss_pred ceEEEEEEEEEE-CcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 46 HGLEFKNLSYSI-MKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 46 ~~L~~~nls~~~-~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
..|+++||+++| ++ +.+|+|+||++++||+++|+||||||||||||+|+|+++ +++|+|.++|++
T Consensus 13 ~~l~~~~l~~~y~g~------------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~ 78 (355)
T 1z47_A 13 MTIEFVGVEKIYPGG------------ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKR 78 (355)
T ss_dssp EEEEEEEEEECCTTS------------TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred ceEEEEEEEEEEcCC------------CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEE
Confidence 359999999998 42 249999999999999999999999999999999999985 468999999999
Q ss_pred CCCc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 125 VTTS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 125 ~~~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
+... ..++.+|||+|+..++|.+||+||+.|+...+ ..++++.+++++++++.+||++..++++. +|||||
T Consensus 79 i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LSGGq 150 (355)
T 1z47_A 79 VTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPH-----ELSGGQ 150 (355)
T ss_dssp CTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHH
T ss_pred CCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHH
Confidence 8542 34567999999999999999999999987654 24566777899999999999988888775 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
||||+|||||+.+|++|||||||+|||+.++.++++.|+++.++ |.|+|++|||++. +..+||++++|++|+++..|+
T Consensus 151 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~-a~~~adri~vl~~G~i~~~g~ 229 (355)
T 1z47_A 151 QQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEE-ALEVADRVLVLHEGNVEQFGT 229 (355)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH-HHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHH-HHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999999765 9999999999874 788999999999999999999
Q ss_pred ccchhh
Q 003437 283 PVALPA 288 (820)
Q Consensus 283 ~~~~~~ 288 (820)
++++..
T Consensus 230 ~~~l~~ 235 (355)
T 1z47_A 230 PEEVYE 235 (355)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988753
No 11
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=7.8e-47 Score=417.55 Aligned_cols=219 Identities=30% Similarity=0.483 Sum_probs=196.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||||+|+|+++ +++|+|.++|+++.
T Consensus 3 ~l~~~~l~~~y~~------------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (362)
T 2it1_A 3 EIKLENIVKKFGN------------FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVT 68 (362)
T ss_dssp CEEEEEEEEESSS------------SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEeEEEEECC------------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 3999999999953 349999999999999999999999999999999999985 46899999999986
Q ss_pred Cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 127 TS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 127 ~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
.. ..++.+|||+|+..++|++||+||+.|+...+ ..++++.+++++++++.+||++..++++. +|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~Q 140 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYPW-----QLSGGQQQ 140 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGG-----GSCHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCChh-----hCCHHHHH
Confidence 42 23567999999999999999999999987654 24566777889999999999998888775 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
||+|||||+.+|++|||||||+|||+..+.++.+.|+++.++ |.|+|++|||.+ ++..+||+|++|++|+++..|+++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~ 219 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIREGEILQVGTPD 219 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999764 999999999987 478899999999999999999998
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 220 ~~~~ 223 (362)
T 2it1_A 220 EVYY 223 (362)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8754
No 12
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.1e-46 Score=418.52 Aligned_cols=219 Identities=30% Similarity=0.485 Sum_probs=196.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||||+|+|+++ +++|+|.++|+++.
T Consensus 3 ~l~~~~l~~~y~~------------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~ 68 (372)
T 1g29_1 3 GVRLVDVWKVFGE------------VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVA 68 (372)
T ss_dssp EEEEEEEEEEETT------------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEE
T ss_pred EEEEEeEEEEECC------------EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECc
Confidence 4899999999953 249999999999999999999999999999999999985 46899999999874
Q ss_pred C-------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 003437 127 T-------SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 127 ~-------~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~L 199 (820)
. ...++.+|||+|+..+||++||+||+.|+...+ ..++++.+++++++++.+||++..++++. +|
T Consensus 69 ~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~L 140 (372)
T 1g29_1 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPR-----EL 140 (372)
T ss_dssp EGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGG-----GS
T ss_pred cccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCcc-----cC
Confidence 3 123567999999999999999999999987654 24566777889999999999998888775 69
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
||||||||+|||||+.+|++|||||||++||+..+.++.+.|+++.++ |.|+|++|||++ ++..+||++++|++|+++
T Consensus 141 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~ 219 (372)
T 1g29_1 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQ 219 (372)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999999764 999999999987 478899999999999999
Q ss_pred EEcCccchhh
Q 003437 279 YMGSPVALPA 288 (820)
Q Consensus 279 ~~G~~~~~~~ 288 (820)
..|+++++..
T Consensus 220 ~~g~~~~l~~ 229 (372)
T 1g29_1 220 QVGSPDEVYD 229 (372)
T ss_dssp EEECHHHHHH
T ss_pred EeCCHHHHHh
Confidence 9999988754
No 13
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.2e-47 Score=398.25 Aligned_cols=219 Identities=27% Similarity=0.429 Sum_probs=189.8
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||||+|+|+++ +++|+|.++|++
T Consensus 4 ~~~l~~~~l~~~y~~------------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~ 69 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGA------------IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQD 69 (240)
T ss_dssp SEEEEEEEEEEEETT------------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CceEEEEeEEEEECC------------eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEE
Confidence 346999999999953 249999999999999999999999999999999999985 468999999999
Q ss_pred CCCcc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCCCCCC
Q 003437 125 VTTSY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLG-LRSATHTYIGNEGRRGV 199 (820)
Q Consensus 125 ~~~~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~ig~~~~~~L 199 (820)
+.... .++.+|||+|++.+++.+||+||+.++.... .+.++..++++++++.++ |.+..++.++ .|
T Consensus 70 ~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~~-----~L 140 (240)
T 1ji0_A 70 ITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLGG-----TL 140 (240)
T ss_dssp CTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBSS-----SS
T ss_pred CCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCChh-----hC
Confidence 85421 2345999999999999999999999864211 122344567889999995 9877777654 69
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++. +..+||++++|++|++++
T Consensus 141 SgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~-~~~~~d~v~~l~~G~i~~ 219 (240)
T 1ji0_A 141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALG-ALKVAHYGYVLETGQIVL 219 (240)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHH-HHHHCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999998789999999999874 778999999999999999
Q ss_pred EcCccchh
Q 003437 280 MGSPVALP 287 (820)
Q Consensus 280 ~G~~~~~~ 287 (820)
.|+++++.
T Consensus 220 ~g~~~~~~ 227 (240)
T 1ji0_A 220 EGKASELL 227 (240)
T ss_dssp EEEHHHHH
T ss_pred EcCHHHHh
Confidence 99887764
No 14
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=6.3e-47 Score=417.86 Aligned_cols=219 Identities=29% Similarity=0.445 Sum_probs=195.1
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||||+|+|+++ +++|+|.++|+++.
T Consensus 3 ~l~~~~l~~~y~~------------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 3 SIRVVNLKKYFGK------------VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVN 68 (359)
T ss_dssp CEEEEEEEEEETT------------EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEECC------------EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECC
Confidence 3899999999953 249999999999999999999999999999999999985 46899999999986
Q ss_pred Cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 127 TS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 127 ~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
.. ..++.+|||+|+..++|++||+||+.|+...+ ..++++.+++++++++.+||++..+++++ +|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSgGq~Q 140 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKPT-----QLSGGQQQ 140 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHH
Confidence 42 23567999999999999999999999986432 23445556789999999999988888775 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
||+|||||+.+|++|||||||+|||+..+.++.+.|+++.++ |.|+|++|||.+. +..+||++++|++|+++..|+++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~-~~~~adri~vl~~G~i~~~g~~~ 219 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAE-AMTMASRIAVFNQGKLVQYGTPD 219 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHH-HHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH-HHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999764 9999999999874 78899999999999999999998
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 220 ~l~~ 223 (359)
T 2yyz_A 220 EVYD 223 (359)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8754
No 15
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3.6e-47 Score=403.42 Aligned_cols=219 Identities=23% Similarity=0.390 Sum_probs=191.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+||||++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++.
T Consensus 7 ~l~i~~l~~~y~~------------~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~ 72 (257)
T 1g6h_A 7 ILRTENIVKYFGE------------FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDIT 72 (257)
T ss_dssp EEEEEEEEEEETT------------EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEeeeEEEECC------------EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 5999999999953 249999999999999999999999999999999999985 46899999999985
Q ss_pred Cc----cccceEEEEccCCCCCCCCCHHHHHHHHHHh-cCCC---------CCCHHHHHHHHHHHHHHcCCCcccccccc
Q 003437 127 TS----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEV-RLPP---------SISRDEKKKRVYELLDQLGLRSATHTYIG 192 (820)
Q Consensus 127 ~~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~-~~~~---------~~~~~~~~~~v~~~l~~lgL~~~~~~~ig 192 (820)
.. ..++.++||+|++.+++.+||+||+.++... +... ....++..++++++++.+||++..++.++
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 152 (257)
T 1g6h_A 73 NKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG 152 (257)
T ss_dssp TCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred CCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCch
Confidence 42 1245689999999999999999999987532 1000 01234456789999999999988888775
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 193 NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 193 ~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++|+|||++||+++. +..+||++++|
T Consensus 153 -----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~d~v~~l 226 (257)
T 1g6h_A 153 -----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVM 226 (257)
T ss_dssp -----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCST-TGGGCSEEEEE
T ss_pred -----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEEE
Confidence 699999999999999999999999999999999999999999999998789999999999985 77899999999
Q ss_pred eCCeEEEEcCccc
Q 003437 273 ARGRLVYMGSPVA 285 (820)
Q Consensus 273 ~~G~iv~~G~~~~ 285 (820)
++|++++.|++++
T Consensus 227 ~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 227 FNGQIIAEGRGEE 239 (257)
T ss_dssp ETTEEEEEEESHH
T ss_pred ECCEEEEEeCHHH
Confidence 9999999999887
No 16
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=6.2e-47 Score=403.21 Aligned_cols=217 Identities=27% Similarity=0.422 Sum_probs=192.0
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++ +.+|+||||++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++
T Consensus 10 ~~l~~~~l~~~~~~------------~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~ 75 (266)
T 4g1u_C 10 ALLEASHLHYHVQQ------------QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNL 75 (266)
T ss_dssp CEEEEEEEEEEETT------------EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEET
T ss_pred ceEEEEeEEEEeCC------------eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 46999999999954 359999999999999999999999999999999999985 4689999999998
Q ss_pred CCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 126 TTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
... ..++.++|++|++.+++.+||+||+.++.... ...+.+++++++++.+||.+..++.++ +||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDYR-----VLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBGG-----GCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHH
Confidence 642 23456899999998888899999999876432 122345678999999999988888775 69999
Q ss_pred HHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 203 ERRRVSIGIDIIH------KPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 203 erqRv~ia~aL~~------~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
|||||+|||||+. +|++|||||||+|||+.++.+++++|++++++ |+|||++|||++. +..+||++++|++|
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~-~~~~~d~v~vl~~G 224 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNL-AALYADRIMLLAQG 224 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHH-HHHHCSEEEEEETT
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHH-HHHhCCEEEEEECC
Confidence 9999999999999 99999999999999999999999999999865 6799999999974 78899999999999
Q ss_pred eEEEEcCccchh
Q 003437 276 RLVYMGSPVALP 287 (820)
Q Consensus 276 ~iv~~G~~~~~~ 287 (820)
++++.|+++++.
T Consensus 225 ~i~~~g~~~~~~ 236 (266)
T 4g1u_C 225 KLVACGTPEEVL 236 (266)
T ss_dssp EEEEEECHHHHC
T ss_pred EEEEEcCHHHHh
Confidence 999999998875
No 17
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=9.4e-47 Score=416.49 Aligned_cols=219 Identities=32% Similarity=0.488 Sum_probs=196.0
Q ss_pred eEEEEEEEEEECccccccccccccccc--ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAY--LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
.|+++||+++|++ +. +|+|+||++++||+++|+||||||||||||+|+|+++ +++|+|.++|++
T Consensus 3 ~l~i~~l~~~y~~------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~ 68 (353)
T 1oxx_K 3 RIIVKNVSKVFKK------------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRL 68 (353)
T ss_dssp CEEEEEEEEEEGG------------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred EEEEEeEEEEECC------------EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEE
Confidence 3899999999943 34 8999999999999999999999999999999999985 468999999998
Q ss_pred CCC------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 125 VTT------SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 125 ~~~------~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
+.. ...++.+|||+|+..++|++||+||+.|+...+ ..++++.+++++++++.+||++..+++++ +
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~~-----~ 140 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----E 140 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----G
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----h
Confidence 743 224567999999999999999999999986543 34566777899999999999998888775 6
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.++ |.|+|++|||++. +..+||++++|++|++
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~-~~~~adri~vl~~G~i 219 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD-IFAIADRVGVLVKGKL 219 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHH-HHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999764 9999999999974 7889999999999999
Q ss_pred EEEcCccchhh
Q 003437 278 VYMGSPVALPA 288 (820)
Q Consensus 278 v~~G~~~~~~~ 288 (820)
+..|+++++..
T Consensus 220 ~~~g~~~~l~~ 230 (353)
T 1oxx_K 220 VQVGKPEDLYD 230 (353)
T ss_dssp EEEECHHHHHH
T ss_pred EEEcCHHHHHh
Confidence 99999988753
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.2e-46 Score=417.45 Aligned_cols=219 Identities=27% Similarity=0.452 Sum_probs=189.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||||+|+|+++ +++|+|.++|+++.
T Consensus 11 ~l~~~~l~~~y~~------------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 76 (372)
T 1v43_A 11 EVKLENLTKRFGN------------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVT 76 (372)
T ss_dssp CEEEEEEEEEETT------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred eEEEEEEEEEECC------------EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECC
Confidence 4999999999953 249999999999999999999999999999999999985 46899999999986
Q ss_pred Cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 127 TS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 127 ~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
.. ..++.+|||+|+..+||++||+||+.|+...+ ..++++.+++++++++.+||++..++++. +|||||||
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~Q 148 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPA-----QLSGGQRQ 148 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTT-----TCCSSCHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHH
Confidence 42 23567999999999999999999999975432 24566777889999999999988887765 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
||+|||||+.+|++|||||||++||+..+.++.+.|+++.++ |.|+|++|||.+. +..+||++++|++|+++..|+++
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~-a~~~adri~vl~~G~i~~~g~~~ 227 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVE-AMTMGDRIAVMNRGQLLQIGSPT 227 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH-HHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999765 9999999999874 78899999999999999999998
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 228 ~l~~ 231 (372)
T 1v43_A 228 EVYL 231 (372)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8753
No 19
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=4.2e-46 Score=391.02 Aligned_cols=213 Identities=29% Similarity=0.447 Sum_probs=187.4
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +|+|+|+++++ |+++|+||||||||||||+|+|+++ +++|+|.++|+++..
T Consensus 2 l~~~~l~~~y~~--------------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 64 (240)
T 2onk_A 2 FLKVRAEKRLGN--------------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITP 64 (240)
T ss_dssp CEEEEEEEEETT--------------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTT
T ss_pred EEEEEEEEEeCC--------------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCc
Confidence 789999999841 59999999999 9999999999999999999999985 468999999999853
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 128 S-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 128 ~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
. ..++.+|||+|++.+++.+||+||+.++...+ .....+++++++++.+||.+..++.++ +||||||||
T Consensus 65 ~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqR 134 (240)
T 2onk_A 65 LPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQR 134 (240)
T ss_dssp SCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHH
T ss_pred CchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHH
Confidence 2 23567899999999999999999999864321 122236778999999999988887775 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA 285 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 285 (820)
|+|||||+.+|++|||||||+|||+.++..+++.|+++++ .|+|||++||+++. +..+||++++|++|++++.|++++
T Consensus 135 v~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~-~~~~~d~i~~l~~G~i~~~g~~~~ 213 (240)
T 2onk_A 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE-AAMLADEVAVMLNGRIVEKGKLKE 213 (240)
T ss_dssp HHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHH-HHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999976 49999999999874 778999999999999999999887
Q ss_pred hhh
Q 003437 286 LPA 288 (820)
Q Consensus 286 ~~~ 288 (820)
+..
T Consensus 214 ~~~ 216 (240)
T 2onk_A 214 LFS 216 (240)
T ss_dssp HHH
T ss_pred HHh
Confidence 643
No 20
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=4.4e-46 Score=409.79 Aligned_cols=213 Identities=30% Similarity=0.476 Sum_probs=190.8
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|+ ++ +|+|+||++++||+++|+||||||||||||+|+|+++ +++|+|.++|+++..
T Consensus 2 l~~~~l~~~y~------------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~ 66 (348)
T 3d31_A 2 IEIESLSRKWK------------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTD 66 (348)
T ss_dssp EEEEEEEEECS------------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTT
T ss_pred EEEEEEEEEEC------------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECCC
Confidence 78999999984 24 8999999999999999999999999999999999985 468999999999864
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 128 S-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 128 ~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
. ..++.+|||+|+..+||++||+||+.|+...+. .+++ ++++++++.+||++..+++++ +||||||||
T Consensus 67 ~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~~~-----~LSgGq~QR 135 (348)
T 3d31_A 67 LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRNPL-----TLSGGEQQR 135 (348)
T ss_dssp SCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSCGG-----GSCHHHHHH
T ss_pred CchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCChh-----hCCHHHHHH
Confidence 2 235678999999999999999999999876542 1222 678999999999998888775 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA 285 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 285 (820)
|+|||||+.+|++|||||||++||+..+.++.+.|+++.+ .|.|+|++|||++ ++..+||++++|++|+++..|++++
T Consensus 136 valAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~ 214 (348)
T 3d31_A 136 VALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEE 214 (348)
T ss_dssp HHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999976 4999999999987 4788999999999999999999988
Q ss_pred hh
Q 003437 286 LP 287 (820)
Q Consensus 286 ~~ 287 (820)
+.
T Consensus 215 ~~ 216 (348)
T 3d31_A 215 IF 216 (348)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 21
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=9.9e-46 Score=390.81 Aligned_cols=220 Identities=27% Similarity=0.358 Sum_probs=182.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+||||++++||+++|+||||||||||+|+|+|+....+++|+|.++|+++.
T Consensus 3 ~l~~~~l~~~y~~------------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 3 QLEIRDLWASIDG------------ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL 70 (250)
T ss_dssp EEEEEEEEEEETT------------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECT
T ss_pred eEEEEeEEEEECC------------EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECC
Confidence 4899999999953 2499999999999999999999999999999999998211356899999999985
Q ss_pred Ccc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-CccccccccCCCCCC-CC
Q 003437 127 TSY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-RSATHTYIGNEGRRG-VS 200 (820)
Q Consensus 127 ~~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~ig~~~~~~-LS 200 (820)
... .++.++||+|++.+++.+||+||+.+.............+..++++++++.+|| .+..++.++ . ||
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LS 145 (250)
T 2d2e_A 71 ELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN-----EGFS 145 (250)
T ss_dssp TSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTT-----CC--
T ss_pred CCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc-----cCCC
Confidence 421 134479999999999999999999987532111112344556788999999999 477777664 5 99
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhh-cCEEEEEeCCeEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQML-LDRIIVLARGRLVY 279 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~lL~~G~iv~ 279 (820)
|||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++. +..+ ||++++|++|++++
T Consensus 146 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~~d~v~~l~~G~i~~ 224 (250)
T 2d2e_A 146 GGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI-LNYIQPDKVHVMMDGRVVA 224 (250)
T ss_dssp --HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGG-GGTSCCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999997779999999999975 6667 59999999999999
Q ss_pred EcCcc
Q 003437 280 MGSPV 284 (820)
Q Consensus 280 ~G~~~ 284 (820)
.|+++
T Consensus 225 ~g~~~ 229 (250)
T 2d2e_A 225 TGGPE 229 (250)
T ss_dssp EESHH
T ss_pred EeCHH
Confidence 99876
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=9.8e-46 Score=394.31 Aligned_cols=224 Identities=28% Similarity=0.389 Sum_probs=190.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+.... ..+.+|+|+|++|++||+++|+||||||||||||+|+|+++ +++|+|.++|+++.
T Consensus 2 ~l~~~~l~~~y~~~~~-------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTP-------LEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKK 72 (266)
T ss_dssp CEEEEEEEEEESTTST-------TCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEEEEEEecCCCc-------cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECc
Confidence 4899999999951100 00359999999999999999999999999999999999985 46899999999886
Q ss_pred CccccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCCCCCCCChHH
Q 003437 127 TSYMKMVSSYVMQDD-QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR--SATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~ig~~~~~~LSGGe 203 (820)
....++.+|||+|++ .+++.+||+||+.++.... .+.++..++++++++.+||. +..++.++ +|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-----~LSgGq 143 (266)
T 2yz2_A 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVPF-----FLSGGE 143 (266)
T ss_dssp HHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCGG-----GSCHHH
T ss_pred hHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCChh-----hCCHHH
Confidence 433456799999995 4566789999999875321 12222346788999999998 88777765 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++. +..+||++++|++|++++.|++
T Consensus 144 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~-~~~~~d~v~~l~~G~i~~~g~~ 222 (266)
T 2yz2_A 144 KRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET-VINHVDRVVVLEKGKKVFDGTR 222 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTT-TGGGCSEEEEEETTEEEEEEEH
T ss_pred HHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999998779999999999985 7778999999999999999998
Q ss_pred cchhhh
Q 003437 284 VALPAH 289 (820)
Q Consensus 284 ~~~~~~ 289 (820)
+++...
T Consensus 223 ~~~~~~ 228 (266)
T 2yz2_A 223 MEFLEK 228 (266)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 887643
No 23
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=6.3e-45 Score=388.19 Aligned_cols=224 Identities=27% Similarity=0.316 Sum_probs=189.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+||||+|++||+++|+||||||||||+|+|+|+....+++|+|.++|+++.
T Consensus 20 ~l~~~~l~~~y~~------------~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~ 87 (267)
T 2zu0_C 20 MLSIKDLHVSVED------------KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 87 (267)
T ss_dssp CEEEEEEEEEETT------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGG
T ss_pred eEEEEeEEEEECC------------EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 5999999999953 2499999999999999999999999999999999998522356899999999875
Q ss_pred Cc---cc-cceEEEEccCCCCCCCCCHHHHHHHHHH-hc---CCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 003437 127 TS---YM-KMVSSYVMQDDQLFPMLTVFETFMFAAE-VR---LPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRR 197 (820)
Q Consensus 127 ~~---~~-~~~~gyv~Q~~~l~~~lTV~e~l~~~~~-~~---~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~ 197 (820)
.. .. ++.++||+|++.+++.+||.|++.+... .+ .....+.++..++++++++.+||. +..++.++ .
T Consensus 88 ~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~----~ 163 (267)
T 2zu0_C 88 ALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN----V 163 (267)
T ss_dssp GSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----T
T ss_pred cCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----c
Confidence 32 11 2348999999999999999999987642 21 111234555567899999999996 46666653 1
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhh-cCEEEEEeCCe
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQML-LDRIIVLARGR 276 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~lL~~G~ 276 (820)
+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++. +..+ ||++++|++|+
T Consensus 164 ~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~-~~~~~~d~v~~l~~G~ 242 (267)
T 2zu0_C 164 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQGR 242 (267)
T ss_dssp TCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG-GGTSCCSEEEEEETTE
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH-HHhhcCCEEEEEECCE
Confidence 499999999999999999999999999999999999999999999997779999999999874 5665 89999999999
Q ss_pred EEEEcCccchh
Q 003437 277 LVYMGSPVALP 287 (820)
Q Consensus 277 iv~~G~~~~~~ 287 (820)
+++.|+++++.
T Consensus 243 i~~~g~~~~~~ 253 (267)
T 2zu0_C 243 IVKSGDFTLVK 253 (267)
T ss_dssp EEEEECTTHHH
T ss_pred EEEEcCHHHHh
Confidence 99999988764
No 24
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=9.5e-46 Score=396.61 Aligned_cols=222 Identities=23% Similarity=0.318 Sum_probs=186.9
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++ +.+|+||||+|++||+++|+||||||||||||+|+|+++ +++|+|.++|+++
T Consensus 20 ~~l~~~~l~~~y~~------------~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 85 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG------------KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKMP 85 (279)
T ss_dssp EEEEEEEEEEEETT------------EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBCC
T ss_pred ceEEEEeEEEEECC------------EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 35999999999953 249999999999999999999999999999999999985 4689999999987
Q ss_pred C--C---ccccceEEEEccCCCC--CCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 003437 126 T--T---SYMKMVSSYVMQDDQL--FPMLTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRR 197 (820)
Q Consensus 126 ~--~---~~~~~~~gyv~Q~~~l--~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~ 197 (820)
. . ...++.++||+|++.+ .+.+||+||+.++...... .....++..++++++++.+||.+..++.++
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~----- 160 (279)
T 2ihy_A 86 GKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG----- 160 (279)
T ss_dssp C---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGG-----
T ss_pred ccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChh-----
Confidence 5 2 1235679999998753 3457999999886321100 011123445778999999999988888775
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEE--EEEEcCccHHHHhhcCEEEEEeCC
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIV--LMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tv--i~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++|+|| |++||+++. +..+||++++|++|
T Consensus 161 ~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~-~~~~~d~v~~l~~G 239 (279)
T 2ihy_A 161 YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEE-ITANFSKILLLKDG 239 (279)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGG-CCTTCCEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHH-HHHhCCEEEEEECC
Confidence 699999999999999999999999999999999999999999999998779999 999999974 77899999999999
Q ss_pred eEEEEcCccchh
Q 003437 276 RLVYMGSPVALP 287 (820)
Q Consensus 276 ~iv~~G~~~~~~ 287 (820)
++++.|+++++.
T Consensus 240 ~i~~~g~~~~~~ 251 (279)
T 2ihy_A 240 QSIQQGAVEDIL 251 (279)
T ss_dssp EEEEEEEHHHHC
T ss_pred EEEEECCHHHHh
Confidence 999999887664
No 25
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=4.7e-44 Score=378.41 Aligned_cols=211 Identities=24% Similarity=0.393 Sum_probs=182.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+. ++.+|+|+|++|++||+++|+||||||||||+|+|+|+++ +++|+|.
T Consensus 4 ~l~i~~l~~~y~~-----------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~------- 63 (253)
T 2nq2_C 4 ALSVENLGFYYQA-----------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE------- 63 (253)
T ss_dssp EEEEEEEEEEETT-----------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE-------
T ss_pred eEEEeeEEEEeCC-----------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE-------
Confidence 4999999999951 1249999999999999999999999999999999999985 4689998
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
.++.++||+|++.+++.+||+||+.++...... ......+..++++++++.+||.+..++.++ +|||||||
T Consensus 64 ---~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~q 135 (253)
T 2nq2_C 64 ---VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFT-----SLSGGQRQ 135 (253)
T ss_dssp ---ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHH
T ss_pred ---EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChh-----hCCHHHHH
Confidence 245689999999999899999999987532210 001123445778999999999988887765 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++. +..+||++++|++|+ ++.|+++
T Consensus 136 rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~-~~~~~d~v~~l~~G~-~~~g~~~ 213 (253)
T 2nq2_C 136 LILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ-VVAIANKTLLLNKQN-FKFGETR 213 (253)
T ss_dssp HHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHH-HHHHCSEEEEEETTE-EEEEEHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEeCCe-EecCCHH
Confidence 999999999999999999999999999999999999999876 9999999999974 778999999999999 9999887
Q ss_pred chh
Q 003437 285 ALP 287 (820)
Q Consensus 285 ~~~ 287 (820)
++.
T Consensus 214 ~~~ 216 (253)
T 2nq2_C 214 NIL 216 (253)
T ss_dssp HHC
T ss_pred HHh
Confidence 663
No 26
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.3e-44 Score=381.35 Aligned_cols=218 Identities=27% Similarity=0.464 Sum_probs=182.3
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
.+.++++||+++|++. ++.+|+||||+|++||+++|+||||||||||||+|+|+++ +++|+|.++|++
T Consensus 5 ~~~~~~~~l~~~y~~~----------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~ 72 (247)
T 2ff7_A 5 HHDITFRNIRFRYKPD----------SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHD 72 (247)
T ss_dssp CEEEEEEEEEEESSTT----------SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred cCceeEEEEEEEeCCC----------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 3569999999999321 1359999999999999999999999999999999999985 468999999999
Q ss_pred CCCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc------cCCC
Q 003437 125 VTTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYI------GNEG 195 (820)
Q Consensus 125 ~~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~i------g~~~ 195 (820)
+... ..++.++||+|++.+++ .||+||+.++.. ..+ .+++.++++.+++.+..++.. -++.
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~ 142 (247)
T 2ff7_A 73 LALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQ 142 (247)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTT
T ss_pred hhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCC
Confidence 8642 23567999999998887 599999987521 122 235677788888876554332 0233
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. +|+|||++||+++. + ..||++++|++|
T Consensus 143 ~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~G 219 (247)
T 2ff7_A 143 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEKG 219 (247)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEECC
Confidence 56899999999999999999999999999999999999999999999995 59999999999974 4 459999999999
Q ss_pred eEEEEcCccchh
Q 003437 276 RLVYMGSPVALP 287 (820)
Q Consensus 276 ~iv~~G~~~~~~ 287 (820)
++++.|+++++.
T Consensus 220 ~i~~~g~~~~l~ 231 (247)
T 2ff7_A 220 KIVEQGKHKELL 231 (247)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEECCHHHHH
Confidence 999999988774
No 27
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.6e-44 Score=390.98 Aligned_cols=216 Identities=28% Similarity=0.446 Sum_probs=182.2
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+|+|++. +.+|+||||+|++||++||+||||||||||+|+|+|++. +.+|+|.++|+++
T Consensus 52 ~~i~~~~vs~~y~~~-----------~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~~i 118 (306)
T 3nh6_A 52 GRIEFENVHFSYADG-----------RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQDI 118 (306)
T ss_dssp CCEEEEEEEEESSTT-----------CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CeEEEEEEEEEcCCC-----------CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECCEEc
Confidence 459999999999532 359999999999999999999999999999999999985 4689999999998
Q ss_pred CCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 003437 126 TTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-------ATHTYIGNEG 195 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~ 195 (820)
... ..++.++||+|++.+|+. ||+|||.++... ... +++.++++.+++.+ ..++.++. .
T Consensus 119 ~~~~~~~~r~~i~~v~Q~~~lf~~-Tv~eNi~~~~~~-----~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~ 187 (306)
T 3nh6_A 119 SQVTQASLRSHIGVVPQDTVLFND-TIADNIRYGRVT-----AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGE-R 187 (306)
T ss_dssp TSBCHHHHHHTEEEECSSCCCCSE-EHHHHHHTTSTT-----CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEEST-T
T ss_pred ccCCHHHHhcceEEEecCCccCcc-cHHHHHHhhccc-----CCH----HHHHHHHHHhCcHHHHHhccchhhhHhcC-C
Confidence 653 346779999999999964 999999986421 122 23455555555543 34566653 3
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
..+|||||||||+|||||+.+|+||||||||++||+.+...|++.|+++.+ ++|+|+++|+++. +.. ||+|++|++|
T Consensus 188 g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~~~-aD~i~vl~~G 264 (306)
T 3nh6_A 188 GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLST-VVN-ADQILVIKDG 264 (306)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHH-HHT-CSEEEEEETT
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHH-HHc-CCEEEEEECC
Confidence 457999999999999999999999999999999999999999999999865 7899999999985 554 9999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+++++..
T Consensus 265 ~iv~~G~~~el~~ 277 (306)
T 3nh6_A 265 CIVERGRHEALLS 277 (306)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998865
No 28
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.2e-44 Score=386.61 Aligned_cols=219 Identities=24% Similarity=0.385 Sum_probs=182.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++. ..+.+|+||||+|++||+++|+||||||||||||+|+|+++ +++|+|.++|+++.
T Consensus 16 ~l~~~~l~~~y~~~---------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~ 84 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH---------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPLV 84 (271)
T ss_dssp CEEEEEEEECCTTC---------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGG
T ss_pred eEEEEEEEEEeCCC---------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEcc
Confidence 59999999999531 01359999999999999999999999999999999999985 46899999999885
Q ss_pred Cc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHH-----HHHHHHHHHHHc--CCCccccccccCCCC
Q 003437 127 TS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDE-----KKKRVYELLDQL--GLRSATHTYIGNEGR 196 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~~~~ig~~~~ 196 (820)
.. ..++.++||+|++.+++ .||+||+.++.... ...++ ....+.++++.+ ||.+..+..++
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~---- 155 (271)
T 2ixe_A 85 QYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT----PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGN---- 155 (271)
T ss_dssp GBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC----CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGT----
T ss_pred cCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccC----ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcC----
Confidence 32 23456999999999887 59999998864211 11111 123456778888 67766666554
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ +|+|||++||+++. +. .||++++|++|
T Consensus 156 -~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~-~~-~~d~v~~l~~G 232 (271)
T 2ixe_A 156 -QLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-AE-RAHHILFLKEG 232 (271)
T ss_dssp -TSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH-HT-TCSEEEEEETT
T ss_pred -CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-HH-hCCEEEEEECC
Confidence 6999999999999999999999999999999999999999999999975 59999999999874 54 59999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+++++..
T Consensus 233 ~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 233 SVCEQGTHLQLME 245 (271)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999887753
No 29
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3.3e-44 Score=378.45 Aligned_cols=208 Identities=23% Similarity=0.394 Sum_probs=183.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++ .+|+|+||++++||+++|+||||||||||||+|+|+++ ++ |+|.++|+++.
T Consensus 4 ~l~~~~l~~~----------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~ 64 (249)
T 2qi9_C 4 VMQLQDVAES----------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLE 64 (249)
T ss_dssp EEEEEEEEET----------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGG
T ss_pred EEEEEceEEE----------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECC
Confidence 4899999974 28999999999999999999999999999999999985 46 99999999875
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
. ...++.++||+|++.+++.+||+||+.++.. . ..+ .++++++++.+||++..++.++ +|||||
T Consensus 65 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq 131 (249)
T 2qi9_C 65 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH---D-KTR----TELLNDVAGALALDDKLGRSTN-----QLSGGE 131 (249)
T ss_dssp GSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS---S-TTC----HHHHHHHHHHTTCGGGTTSBGG-----GCCHHH
T ss_pred cCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc---c-CCc----HHHHHHHHHHcCChhHhcCChh-----hCCHHH
Confidence 3 1235669999999999999999999987521 1 112 4678899999999988887765 699999
Q ss_pred HHHHHHHHHHhcCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 204 RRRVSIGIDIIHKPS-------LLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 204 rqRv~ia~aL~~~P~-------lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|+|||++||+++. +..+||++++|++|+
T Consensus 132 ~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~-~~~~~d~v~~l~~G~ 210 (249)
T 2qi9_C 132 WQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNH-TLRHAHRAWLLKGGK 210 (249)
T ss_dssp HHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHCSEEEEEETTE
T ss_pred HHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEECCE
Confidence 999999999999999 999999999999999999999999998779999999999874 778999999999999
Q ss_pred EEEEcCccchh
Q 003437 277 LVYMGSPVALP 287 (820)
Q Consensus 277 iv~~G~~~~~~ 287 (820)
+++.|+++++.
T Consensus 211 i~~~g~~~~~~ 221 (249)
T 2qi9_C 211 MLASGRREEVL 221 (249)
T ss_dssp EEEEEEHHHHS
T ss_pred EEEeCCHHHHh
Confidence 99999887764
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=3.6e-44 Score=377.31 Aligned_cols=216 Identities=28% Similarity=0.438 Sum_probs=182.4
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ ++.+|+|||++|++||+++|+||||||||||||+|+|+++ +++|+|.++|+++..
T Consensus 2 l~~~~l~~~y~~-----------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 68 (243)
T 1mv5_A 2 LSARHVDFAYDD-----------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDN 68 (243)
T ss_dssp EEEEEEEECSSS-----------SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEESTT
T ss_pred EEEEEEEEEeCC-----------CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhh
Confidence 889999999832 1359999999999999999999999999999999999985 468999999999853
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CCCCCC
Q 003437 128 ---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIG------NEGRRG 198 (820)
Q Consensus 128 ---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig------~~~~~~ 198 (820)
...++.++||+|++.+++. ||+||+.++.. + ... .++++++++.+++.+..++... ++.+..
T Consensus 69 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~ 139 (243)
T 1mv5_A 69 ISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVK 139 (243)
T ss_dssp TSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBC
T ss_pred CCHHHHHhhEEEEcCCCccccc-cHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCc
Confidence 2345678999999998874 99999987521 1 122 2457788999999876654421 233568
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ +|+|||++||+++. +. .||++++|++|+++
T Consensus 140 LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~-~~-~~d~v~~l~~G~i~ 216 (243)
T 1mv5_A 140 ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLST-IV-DADKIYFIEKGQIT 216 (243)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHH-HH-HCSEEEEEETTEEC
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHH-HH-hCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999997 69999999999874 54 69999999999999
Q ss_pred EEcCccchhh
Q 003437 279 YMGSPVALPA 288 (820)
Q Consensus 279 ~~G~~~~~~~ 288 (820)
+.|+++++..
T Consensus 217 ~~g~~~~~~~ 226 (243)
T 1mv5_A 217 GSGKHNELVA 226 (243)
T ss_dssp CCSCHHHHHH
T ss_pred EeCCHHHHHh
Confidence 9998877653
No 31
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=6.3e-44 Score=367.88 Aligned_cols=203 Identities=20% Similarity=0.352 Sum_probs=174.5
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
+..|+++||+++|++ .+|+|+|+++++||+++|+||||||||||||+|+|+++ +++|+|.++|++
T Consensus 8 ~~~l~~~~ls~~y~~-------------~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~ 72 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK-------------PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVP 72 (214)
T ss_dssp -CEEEEEEEEEESSS-------------EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CceEEEEEEEEEeCC-------------eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEE
Confidence 346999999999842 39999999999999999999999999999999999985 468999999998
Q ss_pred CCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 125 VTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 125 ~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
+. ..++.++||+|++.+++.+||+||+.++...+. .. .+ .++++++++.+||++. ++.+. +||||||
T Consensus 73 ~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~---~~-~~-~~~~~~~l~~~gl~~~-~~~~~-----~LSgGqk 139 (214)
T 1sgw_A 73 IT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYG---VK-VN-KNEIMDALESVEVLDL-KKKLG-----ELSQGTI 139 (214)
T ss_dssp GG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTT---CC-CC-HHHHHHHHHHTTCCCT-TSBGG-----GSCHHHH
T ss_pred hh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcC---Cc-hH-HHHHHHHHHHcCCCcC-CCChh-----hCCHHHH
Confidence 86 346779999999999999999999999865431 11 12 4578899999999877 66654 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
|||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++. +..+||+++++ .|+|
T Consensus 140 qrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~-~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 140 RRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS-YCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT-TSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEe-CCcc
Confidence 99999999999999999999999999999999999999998778999999999985 77788887754 4544
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.8e-43 Score=372.40 Aligned_cols=210 Identities=22% Similarity=0.343 Sum_probs=181.3
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++.. ..+.+|+|+|++++ ||+++|+||||||||||||+|+|++ | ++|+|.++|+++..
T Consensus 2 l~~~~l~~~y~~~~--------~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~~ 69 (263)
T 2pjz_A 2 IQLKNVGITLSGKG--------YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVRK 69 (263)
T ss_dssp EEEEEEEEEEEEET--------TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGGG
T ss_pred EEEEEEEEEeCCCC--------ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECcc
Confidence 88999999995310 01359999999999 9999999999999999999999987 5 58999999998753
Q ss_pred ccccceEE-EEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCChHHHH
Q 003437 128 SYMKMVSS-YVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 128 ~~~~~~~g-yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSGGerq 205 (820)
...++.++ ||+|++.+ .+||+||+.+....+ .. ..++++++++.+||. +..++.++ +|||||||
T Consensus 70 ~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~~-----~LSgGqkq 135 (263)
T 2pjz_A 70 IRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKLY-----KLSAGQSV 135 (263)
T ss_dssp CSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBGG-----GSCHHHHH
T ss_pred hHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCChh-----hCCHHHHH
Confidence 21255789 99999887 789999999876543 11 135688999999998 87777765 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcC-EEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLD-RIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D-~v~lL~~G~iv~~G~~~ 284 (820)
||+|||||+.+|++|||||||+|||+.++..+++.|+++++ |||++||+++. +..+|| ++++|++|++++.|+++
T Consensus 136 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~-~~~~~d~~i~~l~~G~i~~~g~~~ 211 (263)
T 2pjz_A 136 LVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELDM-LNLYKEYKAYFLVGNRLQGPISVS 211 (263)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGG-GGGCTTSEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHH-HHHhcCceEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999998854 99999999975 678999 99999999999999987
Q ss_pred chh
Q 003437 285 ALP 287 (820)
Q Consensus 285 ~~~ 287 (820)
++.
T Consensus 212 ~l~ 214 (263)
T 2pjz_A 212 ELL 214 (263)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=4e-43 Score=372.90 Aligned_cols=216 Identities=27% Similarity=0.422 Sum_probs=179.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+++. .+.+|+|||++|++||+++|+||||||||||+|+|+|+++ + +|+|.++|+++.
T Consensus 17 ~l~i~~l~~~y~~~~---------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i~ 84 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQT---------NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNVN 84 (260)
T ss_dssp CEEEEEEEECCTTCC---------SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEGG
T ss_pred eEEEEEEEEEeCCCC---------cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEhh
Confidence 499999999995421 1359999999999999999999999999999999999984 3 799999999885
Q ss_pred Cc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCCCC
Q 003437 127 TS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-------THTYIGNEGR 196 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~ig~~~~ 196 (820)
.. ..++.++||+|++.+++ .||+||+.++.. ... .+++.++++.+++.+. .++.++ +.+
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~-~~~ 153 (260)
T 2ghi_A 85 KYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVG-NKG 153 (260)
T ss_dssp GBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEES-SSS
T ss_pred hcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhcccccccccc-CCc
Confidence 32 24567999999999887 599999987521 112 2345666777766443 344443 345
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ |+|||++||+++. + ..||++++|++|+
T Consensus 154 ~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~G~ 230 (260)
T 2ghi_A 154 MKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNKGK 230 (260)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEETTE
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCE
Confidence 68999999999999999999999999999999999999999999999965 8999999999975 4 4599999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
+++.|+++++..
T Consensus 231 i~~~g~~~~l~~ 242 (260)
T 2ghi_A 231 IVEKGTHKDLLK 242 (260)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEECCHHHHHh
Confidence 999999887753
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=5.5e-42 Score=357.53 Aligned_cols=204 Identities=24% Similarity=0.404 Sum_probs=167.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+.. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++ +.+|+|.++|
T Consensus 6 ~l~~~~l~~~y~~~----------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g---- 69 (229)
T 2pze_A 6 EVVMENVTAFWEEG----------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG---- 69 (229)
T ss_dssp EEEEEEEEECSSTT----------SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS----
T ss_pred eEEEEEEEEEeCCC----------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC----
Confidence 59999999998521 2359999999999999999999999999999999999985 4689999998
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCCCCCCC
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT-------HTYIGNEGRRGV 199 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~ig~~~~~~L 199 (820)
.++||+|++.+++. ||+||+.++.. ... .++.++++.+++.+.. ++.++ +.+..|
T Consensus 70 ------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~L 131 (229)
T 2pze_A 70 ------RISFCSQFSWIMPG-TIKENIIFGVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLG-EGGITL 131 (229)
T ss_dssp ------CEEEECSSCCCCSB-CHHHHHHTTSC------CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBC-TTCTTS
T ss_pred ------EEEEEecCCcccCC-CHHHHhhccCC------cCh----HHHHHHHHHhCcHHHHHhCccccccccc-CCCCcC
Confidence 37999999999886 99999987531 111 1233445555554332 22332 234689
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK-VKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~-L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
||||||||+|||||+.+|++|||||||+|||+.++..+++. ++++. +|+|||++||+++. +. .||++++|++|+++
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~-~~-~~d~v~~l~~G~i~ 208 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEH-LK-KADKILILHEGSSY 208 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHH-HH-HCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHH-HH-hCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999997 45664 48999999999874 54 59999999999999
Q ss_pred EEcCccchh
Q 003437 279 YMGSPVALP 287 (820)
Q Consensus 279 ~~G~~~~~~ 287 (820)
+.|+++++.
T Consensus 209 ~~g~~~~~~ 217 (229)
T 2pze_A 209 FYGTFSELQ 217 (229)
T ss_dssp EEECHHHHH
T ss_pred EECCHHHHH
Confidence 999988764
No 35
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-42 Score=387.82 Aligned_cols=216 Identities=22% Similarity=0.342 Sum_probs=183.3
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|... .+.+|+||||+|++||+++|+||||||||||||+|+|+++ ++|+|.++|+++
T Consensus 18 ~~i~~~~l~~~y~~~----------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~i 84 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEG----------GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSW 84 (390)
T ss_dssp CCEEEEEEEEESSSS----------SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCBT
T ss_pred CeEEEEEEEEEecCC----------CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEEC
Confidence 459999999999531 2359999999999999999999999999999999999873 589999999998
Q ss_pred CCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------CCC
Q 003437 126 TTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGN------EGR 196 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~------~~~ 196 (820)
... ..++.+|||+|++.+|+ +||+||+.+.. ... .+++.++++.++|.+..++++.. +..
T Consensus 85 ~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g 153 (390)
T 3gd7_A 85 DSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGG 153 (390)
T ss_dssp TSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTT
T ss_pred CcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhccccccccccccc
Confidence 643 23567999999999998 59999996421 112 35678899999998877766542 122
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..|||||||||+|||||+.+|++|||||||++||+..+.++.+.|+++. .+.|+|+++||.+ ....||||++|++|+
T Consensus 154 ~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~G~ 230 (390)
T 3gd7_A 154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEENK 230 (390)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEETTE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEECCE
Confidence 3499999999999999999999999999999999999999999999864 4899999999986 345699999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
|+..|+++++..
T Consensus 231 i~~~g~~~el~~ 242 (390)
T 3gd7_A 231 VRQYDSILELYH 242 (390)
T ss_dssp EEEESSHHHHHH
T ss_pred EEEECCHHHHHh
Confidence 999999998864
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.2e-41 Score=356.75 Aligned_cols=208 Identities=27% Similarity=0.458 Sum_probs=165.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++. ++.+|+|+|++|++||+++|+||||||||||||+|+|+++ +++|+|.++|
T Consensus 3 ~l~~~~l~~~y~~~----------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 3 SITVRNATFTWARS----------DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp CEEEEEEEEESCTT----------SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred eEEEEEEEEEeCCC----------CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 39999999999531 2359999999999999999999999999999999999985 4689999998
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH---HHHHcCCCc-cccccccCCCCCCCChH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYE---LLDQLGLRS-ATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~---~l~~lgL~~-~~~~~ig~~~~~~LSGG 202 (820)
.++||+|++.+ +.+||+||+.++... ..+ ..+++.+ +++.+++.+ ..++.++ ..+.+||||
T Consensus 67 ------~i~~v~Q~~~~-~~~tv~enl~~~~~~------~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgG 131 (237)
T 2cbz_A 67 ------SVAYVPQQAWI-QNDSLRENILFGCQL------EEP-YYRSVIQACALLPDLEILPSGDRTEIG-EKGVNLSGG 131 (237)
T ss_dssp ------CEEEECSSCCC-CSEEHHHHHHTTSCC------CTT-HHHHHHHHTTCHHHHTTSTTGGGSEES-TTSBCCCHH
T ss_pred ------EEEEEcCCCcC-CCcCHHHHhhCcccc------CHH-HHHHHHHHHhhHHHHHhcccccccccc-CCCCCCCHH
Confidence 38999999865 578999999876321 111 1111211 223333322 1222232 345689999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVK---DIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~---~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
|||||+|||||+.+|++|||||||+|||+.++..+++.|+ ++. +|+|||++||+++. + ..||++++|++|++++
T Consensus 132 qkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~G~i~~ 208 (237)
T 2cbz_A 132 QKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSGGKISE 208 (237)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeCCEEEE
Confidence 9999999999999999999999999999999999999995 443 58999999999975 4 4799999999999999
Q ss_pred EcCccchhh
Q 003437 280 MGSPVALPA 288 (820)
Q Consensus 280 ~G~~~~~~~ 288 (820)
.|+++++..
T Consensus 209 ~g~~~~~~~ 217 (237)
T 2cbz_A 209 MGSYQELLA 217 (237)
T ss_dssp EECHHHHHH
T ss_pred eCCHHHHhh
Confidence 999887753
No 37
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.7e-41 Score=397.65 Aligned_cols=217 Identities=28% Similarity=0.412 Sum_probs=182.9
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++. ++++|+|+|+++++||+++|+||||||||||+|+|+|+++ +++|+|.+||+++
T Consensus 338 ~~i~~~~v~~~y~~~----------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~ 405 (578)
T 4a82_A 338 GRIDIDHVSFQYNDN----------EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNI 405 (578)
T ss_dssp CCEEEEEEEECSCSS----------SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEEG
T ss_pred CeEEEEEEEEEcCCC----------CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEEh
Confidence 469999999999642 2459999999999999999999999999999999999985 4689999999998
Q ss_pred CCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCC
Q 003437 126 TTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYIGNEG 195 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~ 195 (820)
... ..++.++||+|++.+|+. ||+||+.++.. ..+. +++.+.++..++ .+..++.+|+ .
T Consensus 406 ~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~-~ 474 (578)
T 4a82_A 406 KDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP-----TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGE-R 474 (578)
T ss_dssp GGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCS-----SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCG-G
T ss_pred hhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCC-----CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhcc-C
Confidence 642 346679999999999987 99999987631 1222 334455555554 3456677764 3
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
..+|||||||||+|||||+++|++|+|||||||||+.++..+.+.|+++. +++|+|+++|+++. + ..||+|++|++|
T Consensus 475 g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G 551 (578)
T 4a82_A 475 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADKIVVIENG 551 (578)
T ss_dssp GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEEETT
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECC
Confidence 45799999999999999999999999999999999999999999999985 47999999999985 4 459999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+++++.+
T Consensus 552 ~i~~~g~~~el~~ 564 (578)
T 4a82_A 552 HIVETGTHRELIA 564 (578)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
No 38
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=8.1e-41 Score=394.98 Aligned_cols=221 Identities=28% Similarity=0.478 Sum_probs=184.8
Q ss_pred ce-EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 46 HG-LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 46 ~~-L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
.. |+++||+++|+++. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++ +++|+|.+||++
T Consensus 339 ~~~i~~~~v~~~y~~~~---------~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~ 407 (595)
T 2yl4_A 339 QGALEFKNVHFAYPARP---------EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD--PASGTISLDGHD 407 (595)
T ss_dssp CCCEEEEEEEEECSSCT---------TSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CCeEEEEEEEEEeCCCC---------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCEE
Confidence 35 99999999996421 2359999999999999999999999999999999999985 468999999999
Q ss_pred CCCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 003437 125 VTTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-------ATHTYIGNE 194 (820)
Q Consensus 125 ~~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~ 194 (820)
+... ..++.++||+|++.+++. ||+||+.++.... ...+ +++++++++.+++.+ ..|+.+|+.
T Consensus 408 i~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~ 480 (595)
T 2yl4_A 408 IRQLNPVWLRSKIGTVSQEPILFSC-SIAENIAYGADDP--SSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGEK 480 (595)
T ss_dssp TTTBCHHHHHHSEEEECSSCCCCSS-BHHHHHHTTSSST--TTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSSS
T ss_pred hhhCCHHHHHhceEEEccCCcccCC-CHHHHHhhcCCCc--cccC----HHHHHHHHHHcCCHHHHHhCcccccccccCC
Confidence 8642 345679999999999975 9999999864210 0122 345777888887643 457777643
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
+.+|||||||||+|||||+++|++|||||||++||+.++..+.+.|+++.+ |+|+|+++|+++. + +.||++++|++
T Consensus 481 -~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~ 556 (595)
T 2yl4_A 481 -GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLST-I-KNANMVAVLDQ 556 (595)
T ss_dssp -SCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHH-H-HHSSEEEEEET
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH-H-HcCCEEEEEEC
Confidence 468999999999999999999999999999999999999999999999976 8999999999974 5 45999999999
Q ss_pred CeEEEEcCccchhh
Q 003437 275 GRLVYMGSPVALPA 288 (820)
Q Consensus 275 G~iv~~G~~~~~~~ 288 (820)
|++++.|+++++.+
T Consensus 557 G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 557 GKITEYGKHEELLS 570 (595)
T ss_dssp TEEEEEECSCC---
T ss_pred CEEEEECCHHHHHh
Confidence 99999999988753
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=9.5e-41 Score=393.45 Aligned_cols=218 Identities=27% Similarity=0.393 Sum_probs=185.7
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++ +++|+|.+||+++
T Consensus 340 ~~i~~~~v~~~y~~~----------~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~~ 407 (582)
T 3b60_A 340 GDLEFRNVTFTYPGR----------EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDL 407 (582)
T ss_dssp CCEEEEEEEECSSSS----------SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEET
T ss_pred CcEEEEEEEEEcCCC----------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEEc
Confidence 359999999999531 1359999999999999999999999999999999999985 4689999999998
Q ss_pred CCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 003437 126 TTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-------ATHTYIGNEG 195 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~ 195 (820)
... ..++.++||+|++.+++. ||+||+.++.. + ..+ +++++++++.+++.+ ..|+.+|+ .
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~-~ 477 (582)
T 3b60_A 408 REYTLASLRNQVALVSQNVHLFND-TVANNIAYART---E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGE-N 477 (582)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT---S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCT-T
T ss_pred cccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC---C-CCC----HHHHHHHHHHcCCHHHHHhccccccccccC-C
Confidence 642 345679999999999985 99999998631 1 122 245677888887764 34666664 3
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
..+||||||||++|||||+++|++|+|||||++||+.++..+.+.|+++.+ |+|+|+++|+++. + +.||++++|++|
T Consensus 478 ~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G 554 (582)
T 3b60_A 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST-I-EQADEIVVVEDG 554 (582)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG-T-TTCSEEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH-H-HhCCEEEEEECC
Confidence 568999999999999999999999999999999999999999999999975 8999999999985 4 479999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+++++.+
T Consensus 555 ~i~~~g~~~~l~~ 567 (582)
T 3b60_A 555 IIVERGTHSELLA 567 (582)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEecCHHHHHH
Confidence 9999999988764
No 40
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.1e-40 Score=392.97 Aligned_cols=218 Identities=27% Similarity=0.408 Sum_probs=184.9
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++ +++|+|.+||+++
T Consensus 340 ~~i~~~~v~~~y~~~----------~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~ 407 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGK----------EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGHDV 407 (582)
T ss_pred CeEEEEEEEEEcCCC----------CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEh
Confidence 359999999999631 1359999999999999999999999999999999999985 4689999999998
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-------THTYIGNEG 195 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~ig~~~ 195 (820)
.. ...++.++||+|++.+|+. ||+||+.++.. + ..+ +++++++++.+++.+. .|+.+|+ .
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~ 477 (582)
T 3b5x_A 408 RDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGE-N 477 (582)
T ss_pred hhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcC-C
Confidence 53 2356779999999999985 99999988631 1 122 3457778888877653 4555654 3
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
..+||||||||++|||||+++|++|+|||||++||+.++..+.+.|+++.+ |+|+|+++|+++. + +.||++++|++|
T Consensus 478 ~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G 554 (582)
T 3b5x_A 478 GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLST-I-EQADEILVVDEG 554 (582)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH-H-HhCCEEEEEECC
Confidence 468999999999999999999999999999999999999999999999865 8999999999974 4 469999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+++++.+
T Consensus 555 ~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 555 EIIERGRHADLLA 567 (582)
T ss_pred EEEEECCHHHHHh
Confidence 9999999988753
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=7.4e-41 Score=394.31 Aligned_cols=217 Identities=24% Similarity=0.423 Sum_probs=181.9
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++. .+++|+|+|+++++||+++|+||||||||||+|+|+|+++ +++|+|.+||+++
T Consensus 340 ~~i~~~~v~~~y~~~----------~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g~~i 407 (587)
T 3qf4_A 340 GSVSFENVEFRYFEN----------TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDELDV 407 (587)
T ss_dssp CCEEEEEEEECSSSS----------SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESSSBG
T ss_pred CcEEEEEEEEEcCCC----------CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECCEEc
Confidence 459999999999642 2459999999999999999999999999999999999985 4689999999998
Q ss_pred CCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCC
Q 003437 126 TTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYIGNEG 195 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~ 195 (820)
... ..++.++||+|++.+|+. ||+||+.++.. ..+.+ ++.+.++..++ ++..++.+++ .
T Consensus 408 ~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~~----~~~~~~~~~~~~~~i~~l~~g~~~~~~~-~ 476 (587)
T 3qf4_A 408 RTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE-----DATDD----EIVEAAKIAQIHDFIISLPEGYDSRVER-G 476 (587)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS-----SCCHH----HHHHHHHHTTCHHHHHTSSSGGGCEECS-S
T ss_pred ccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC-----CCCHH----HHHHHHHHhCcHHHHHhcccchhhHhcC-C
Confidence 642 346779999999999976 99999987532 12332 23333333333 3456677764 4
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
+.+||||||||++|||||+++|++|||||||++||+.+...+.+.|+++. +|+|+|+++|+++. + ..||+|++|++|
T Consensus 477 ~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-~-~~~d~i~vl~~G 553 (587)
T 3qf4_A 477 GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT-A-LLADKILVLHEG 553 (587)
T ss_dssp SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH-H-TTSSEEEEEETT
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHH-H-HhCCEEEEEECC
Confidence 56899999999999999999999999999999999999999999999985 58999999999974 4 579999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+++++.+
T Consensus 554 ~i~~~g~~~el~~ 566 (587)
T 3qf4_A 554 KVAGFGTHKELLE 566 (587)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998865
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.5e-40 Score=390.78 Aligned_cols=216 Identities=27% Similarity=0.395 Sum_probs=180.7
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++. +++|+|+|+++++||+++|+||||||||||+|+|+|+++ +++|+|.+||+++
T Consensus 353 ~~i~~~~v~~~y~~~-----------~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~i 419 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKK-----------KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGIDI 419 (598)
T ss_dssp CCEEEEEEECCSSSS-----------SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred CeEEEEEEEEECCCC-----------CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCEEh
Confidence 359999999999532 359999999999999999999999999999999999985 4689999999998
Q ss_pred CCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCC
Q 003437 126 TTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-------SATHTYIGNEG 195 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~ 195 (820)
... ..++.++||+|++.+|+. ||+||+.++.. ..++ +++.++++..++. +..++.+|+ .
T Consensus 420 ~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~-~ 488 (598)
T 3qf4_B 420 RKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGNP-----GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTD-N 488 (598)
T ss_dssp GGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSSST-----TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHH-H
T ss_pred hhCCHHHHHhceEEEeCCCccccc-cHHHHHhcCCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccchhcC-C
Confidence 642 356779999999999975 99999987521 1122 2344555555543 344555553 2
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
..+||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++. +|+|+|+++|+++. +. .||+|++|++|
T Consensus 489 g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~~-~~d~i~~l~~G 565 (598)
T 3qf4_B 489 GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-IK-NADLIIVLRDG 565 (598)
T ss_dssp HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-HH-HCSEEEEECSS
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-HH-cCCEEEEEECC
Confidence 35799999999999999999999999999999999999999999999986 58999999999985 54 59999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+++++.+
T Consensus 566 ~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 566 EIVEMGKHDELIQ 578 (598)
T ss_dssp SEEECSCHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2e-39 Score=349.11 Aligned_cols=199 Identities=25% Similarity=0.422 Sum_probs=153.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.+ +.+|+|+||+|++||+++|+||||||||||||+|+|+++ +++|+|.++|
T Consensus 40 ~l~~~~l~~~~--------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g---- 99 (290)
T 2bbs_A 40 SLSFSNFSLLG--------------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG---- 99 (290)
T ss_dssp ----------C--------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS----
T ss_pred eEEEEEEEEcC--------------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC----
Confidence 59999999852 249999999999999999999999999999999999985 4689999998
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCCCCCCC
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATH-------TYIGNEGRRGV 199 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~ig~~~~~~L 199 (820)
.++||+|++.+++. ||+||+. +. . ... .++.++++.+++.+..+ +.++ ..+..|
T Consensus 100 ------~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~L 160 (290)
T 2bbs_A 100 ------RISFCSQNSWIMPG-TIKENII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLG-EGGITL 160 (290)
T ss_dssp ------CEEEECSSCCCCSS-BHHHHHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCC
T ss_pred ------EEEEEeCCCccCcc-cHHHHhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhc-CccCcC
Confidence 37999999998885 9999997 32 1 111 12344555556543322 2232 234689
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKV-KDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L-~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
||||||||+|||||+.+|++|||||||+|||+.++..+++.+ +++. +|+|||++||+++. + ..||++++|++|+++
T Consensus 161 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~-~-~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHEGSSY 237 (290)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHH-H-HHSSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHH-H-HcCCEEEEEECCeEE
Confidence 999999999999999999999999999999999999999974 5554 48999999999864 5 469999999999999
Q ss_pred EEcCccchh
Q 003437 279 YMGSPVALP 287 (820)
Q Consensus 279 ~~G~~~~~~ 287 (820)
+.|+++++.
T Consensus 238 ~~g~~~~l~ 246 (290)
T 2bbs_A 238 FYGTFSELQ 246 (290)
T ss_dssp EEECHHHHH
T ss_pred EeCCHHHHh
Confidence 999988774
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.1e-39 Score=414.75 Aligned_cols=220 Identities=28% Similarity=0.467 Sum_probs=188.9
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|+.+. +.++|+||||+|+|||.+||+||||||||||+++|.|++. +.+|+|++||.++
T Consensus 1075 g~I~f~nVsf~Y~~~~---------~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di 1143 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPERP---------EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEI 1143 (1321)
T ss_dssp CCEEEEEEEECCTTSC---------SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEET
T ss_pred CeEEEEEEEEeCCCCC---------CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCEEh
Confidence 3599999999997532 3469999999999999999999999999999999999985 4689999999998
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYIGNEG 195 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~ 195 (820)
.. ..+|++++|||||+.+|+. |++|||.|+.. +...+. +.+.++++..++ ++..||.+|+.+
T Consensus 1144 ~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld---~~~~sd----~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G 1215 (1321)
T 4f4c_A 1144 KTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLD---PSSVTM----AQVEEAARLANIHNFIAELPEGFETRVGDRG 1215 (1321)
T ss_dssp TTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSC---TTTSCH----HHHHHHHHHTTCHHHHHTSTTTTCSEETTTS
T ss_pred hhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCC---CCCCCH----HHHHHHHHHhCChHHHHcCcCCCCCEecCCC
Confidence 75 3467889999999999987 99999987632 222333 345556665554 556899998654
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
..||||||||++|||||+++|+|||||||||+||+.+...|.+.|+++. +|+|+|+++|.++. + ..||+|++|++|
T Consensus 1216 -~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT-i-~~aD~I~Vld~G 1291 (1321)
T 4f4c_A 1216 -TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT-V-MNADCIAVVSNG 1291 (1321)
T ss_dssp -CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST-T-TTCSEEEEESSS
T ss_pred -cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH-H-HhCCEEEEEECC
Confidence 5799999999999999999999999999999999999999999998865 48999999999985 4 469999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
+|+++|+++++++
T Consensus 1292 ~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1292 TIIEKGTHTQLMS 1304 (1321)
T ss_dssp SEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999975
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.4e-39 Score=408.56 Aligned_cols=218 Identities=28% Similarity=0.445 Sum_probs=188.4
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+|+|+.. .++++|+|+|++|++||.+||+||||||||||+++|.|++. +.+|+|.+||.++
T Consensus 414 g~I~~~nvsF~Y~~~---------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~~i 482 (1321)
T 4f4c_A 414 GDITVENVHFTYPSR---------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGVDV 482 (1321)
T ss_dssp CCEEEEEEEECCSSS---------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CcEEEEEeeeeCCCC---------CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc--cccCcccCCCccc
Confidence 359999999999753 23569999999999999999999999999999999999885 5789999999998
Q ss_pred CCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCCC
Q 003437 126 TTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLG-------LRSATHTYIGNEG 195 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~ig~~~ 195 (820)
... .+|+.++||+|++.+|.. ||+|||.|+.. ..+. +++.++++..+ |++..||.+|+.+
T Consensus 483 ~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~-----~~~~----~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G 552 (1321)
T 4f4c_A 483 RDINLEFLRKNVAVVSQEPALFNC-TIEENISLGKE-----GITR----EEMVAACKMANAEKFIKTLPNGYNTLVGDRG 552 (1321)
T ss_dssp TTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHHSTTTTSSEESSSS
T ss_pred hhccHHHHhhcccccCCcceeeCC-chhHHHhhhcc-----cchH----HHHHHHHHHccchhHHHcCCCCCccEecCCC
Confidence 753 467789999999999987 99999998732 2333 33555555544 4567899999765
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
. .||||||||++|||||+++|+|||||||||+||+.+...+.+.|+++.+ |+|+|+++|+++. .+.||+|++|++|
T Consensus 553 ~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls~--i~~aD~Iivl~~G 628 (1321)
T 4f4c_A 553 T-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLST--IRNADLIISCKNG 628 (1321)
T ss_dssp C-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTTT--TTTCSEEEEEETT
T ss_pred C-CCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHHH--HHhCCEEEEeeCC
Confidence 4 6999999999999999999999999999999999999999999998864 8999999999984 4679999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
+|++.|+.+++..
T Consensus 629 ~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 629 QVVEVGDHRALMA 641 (1321)
T ss_dssp EEEEEECHHHHHT
T ss_pred eeeccCCHHHHHH
Confidence 9999999999875
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.5e-37 Score=394.46 Aligned_cols=220 Identities=30% Similarity=0.483 Sum_probs=182.7
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+|+|+.+. +.++|+|||+++++||++||+||||||||||+++|+|+++ +++|+|.+||+++
T Consensus 386 g~i~~~~v~~~y~~~~---------~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~--~~~G~i~i~g~~i 454 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRK---------EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD--PLDGMVSIDGQDI 454 (1284)
T ss_dssp CCEEEEEEEECCSSTT---------SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC--CSEEEEEETTEEG
T ss_pred CeEEEEEEEEEcCCCC---------CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEH
Confidence 3599999999996431 2469999999999999999999999999999999999885 4689999999998
Q ss_pred CCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCCCCC
Q 003437 126 TTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRV-----YELLDQLGLRSATHTYIGNEGRR 197 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~ig~~~~~ 197 (820)
... ..++.+|||+|++.+++. ||+||+.++.. ..+.++..+.+ .+.++ .+.+..|+.+|+. ..
T Consensus 455 ~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~t~~~~~-g~ 525 (1284)
T 3g5u_A 455 RTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTMDEIEKAVKEANAYDFIM--KLPHQFDTLVGER-GA 525 (1284)
T ss_dssp GGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCHHHHHHHHHHTTCHHHHH--HSTTGGGCCCSSS-SC
T ss_pred HhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHH--hccccccccccCC-CC
Confidence 642 356679999999999987 99999998742 12333322222 12222 2345677888754 45
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
+|||||||||+|||||+.+|+|||||||||+||+.+...+.+.|+++. +|+|+|+++|+++. +. .||+|++|++|++
T Consensus 526 ~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-i~-~~d~i~vl~~G~i 602 (1284)
T 3g5u_A 526 QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLST-VR-NADVIAGFDGGVI 602 (1284)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHH-HT-TCSEEEECSSSCC
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-HH-cCCEEEEEECCEE
Confidence 799999999999999999999999999999999999999999998875 48999999999985 54 4999999999999
Q ss_pred EEEcCccchhh
Q 003437 278 VYMGSPVALPA 288 (820)
Q Consensus 278 v~~G~~~~~~~ 288 (820)
++.|+++++..
T Consensus 603 ~~~g~~~~l~~ 613 (1284)
T 3g5u_A 603 VEQGNHDELMR 613 (1284)
T ss_dssp CCEECHHHHHH
T ss_pred EEECCHHHHHh
Confidence 99999998864
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=7.8e-37 Score=387.86 Aligned_cols=220 Identities=27% Similarity=0.450 Sum_probs=182.9
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|+++. +.++|+|+|++|++||++||+||||||||||+++|+|+++ +.+|+|.+||+++
T Consensus 1029 g~i~~~~v~~~y~~~~---------~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~i 1097 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRP---------SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEI 1097 (1284)
T ss_dssp CCEEEEEEEBCCSCGG---------GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSCT
T ss_pred CcEEEEEEEEECCCCC---------CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEc
Confidence 4599999999996431 2359999999999999999999999999999999999985 4689999999998
Q ss_pred CCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCCC
Q 003437 126 TTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQL-------GLRSATHTYIGNEG 195 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~ig~~~ 195 (820)
... ..++.++||+|++.+++ .||+||+.++...+ ..+.++. .+.++.. .+.+..|+.+|+.
T Consensus 1098 ~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~---~~~~~~i----~~~~~~~~~~~~i~~l~~gldt~vge~- 1168 (1284)
T 3g5u_A 1098 KQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSR---VVSYEEI----VRAAKEANIHQFIDSLPDKYNTRVGDK- 1168 (1284)
T ss_dssp TSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSC---CCCHHHH----HHHHHHHTCHHHHSSTTTGGGCBCSTT-
T ss_pred ccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCCC---CCCHHHH----HHHHHHhCcHHHHHhCccccccccCCC-
Confidence 642 35677999999998886 59999998753211 2233332 2333333 3455678888854
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
...|||||||||+|||||+.+|+||||||||+|||+.+...+.+.|+++ .+|+|||+++|+++. + ..||||++|++|
T Consensus 1169 G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~G 1245 (1284)
T 3g5u_A 1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQNG 1245 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEETB
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEECC
Confidence 4679999999999999999999999999999999999999999999885 458999999999985 5 459999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+++++.+
T Consensus 1246 ~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1246 KVKEHGTHQQLLA 1258 (1284)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=6.2e-36 Score=351.91 Aligned_cols=205 Identities=26% Similarity=0.382 Sum_probs=177.4
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++|+++.|++ ..|+++|+++++||+++|+||||||||||||+|+|+++ +++|+|.+
T Consensus 356 ~~l~~~~l~~~~~~-------------~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~----- 415 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS-------------FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW----- 415 (607)
T ss_dssp EEEEECCEEEECSS-------------CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC-----
T ss_pred eEEEEeceEEEecc-------------eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEE-----
Confidence 46999999998842 26899999999999999999999999999999999885 46799975
Q ss_pred CCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 126 TTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
...++|++|+..+.+.+||.|++....... ....++++++++.+||.+..++.++ .|||||||
T Consensus 416 -----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~Q 478 (607)
T 3bk7_A 416 -----DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQ 478 (607)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHHH
T ss_pred -----eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHH
Confidence 235899999988778899999887641110 0123568889999999988888776 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeC--CeEEEEcC
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLAR--GRLVYMGS 282 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~--G~iv~~G~ 282 (820)
||+||++|+.+|++|||||||+|||+.++..++++|+++++ .|.|||+++||+.. +..+|||+++|++ |+++..|+
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~-~~~~adrv~vl~~~~g~~~~~g~ 557 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM-IDYVSDRLIVFEGEPGRHGRALP 557 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEcCCcceEEecCC
Confidence 99999999999999999999999999999999999999974 69999999999975 7889999999986 88899999
Q ss_pred ccchhh
Q 003437 283 PVALPA 288 (820)
Q Consensus 283 ~~~~~~ 288 (820)
++++..
T Consensus 558 p~~~~~ 563 (607)
T 3bk7_A 558 PMGMRE 563 (607)
T ss_dssp CEEHHH
T ss_pred HHHHHh
Confidence 988765
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=5.3e-36 Score=348.86 Aligned_cols=205 Identities=25% Similarity=0.383 Sum_probs=176.4
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++|+++.|++ ..|+++|+++++||+++|+||||||||||+|+|+|+++ +.+|+|.+
T Consensus 286 ~~l~~~~l~~~~~~-------------~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~----- 345 (538)
T 1yqt_A 286 TLVTYPRLVKDYGS-------------FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW----- 345 (538)
T ss_dssp EEEEECCEEEEETT-------------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC-----
T ss_pred eEEEEeeEEEEECC-------------EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEE-----
Confidence 46999999998842 26899999999999999999999999999999999885 46799975
Q ss_pred CCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 126 TTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
...++||+|+....+.+||.|++........ ...++++++++.+||.+..++.++ .|||||||
T Consensus 346 -----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~q 408 (538)
T 1yqt_A 346 -----DLTVAYKPQYIKADYEGTVYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDREVN-----ELSGGELQ 408 (538)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHHH
T ss_pred -----CceEEEEecCCcCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHH
Confidence 2358999999887788999998865411110 013567889999999887777775 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeC--CeEEEEcC
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLAR--GRLVYMGS 282 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~--G~iv~~G~ 282 (820)
||+||++|+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||+.. +..+||||++|++ |+++..|+
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~-~~~~~drv~vl~~~~~~~~~~g~ 487 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM-IDYVSDRLMVFEGEPGKYGRALP 487 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH-HHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEeCCcceEeecCC
Confidence 99999999999999999999999999999999999999974 69999999999975 7889999999986 88999999
Q ss_pred ccchhh
Q 003437 283 PVALPA 288 (820)
Q Consensus 283 ~~~~~~ 288 (820)
++++..
T Consensus 488 ~~~~~~ 493 (538)
T 1yqt_A 488 PMGMRE 493 (538)
T ss_dssp CEEHHH
T ss_pred HHHHHh
Confidence 988764
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.9e-35 Score=340.01 Aligned_cols=207 Identities=28% Similarity=0.377 Sum_probs=174.6
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..++++|+++.|++ ..|+++|+++++||+++|+||||||||||+|+|+|+++ +++|+|.+++
T Consensus 268 ~~l~~~~l~~~~~~-------------~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~--- 329 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD-------------FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK--- 329 (538)
T ss_dssp EEEEECCEEEEETT-------------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSC---
T ss_pred ceEEEcceEEEECC-------------EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC---
Confidence 46899999998853 25888899999999999999999999999999999985 4689998754
Q ss_pred CCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 126 TTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
+.++|++|+......+||.||+.+..... .. .....++++++.+||.+..++.++ .|||||||
T Consensus 330 ------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~Q 392 (538)
T 3ozx_A 330 ------QILSYKPQRIFPNYDGTVQQYLENASKDA----LS--TSSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQ 392 (538)
T ss_dssp ------CCEEEECSSCCCCCSSBHHHHHHHHCSST----TC--TTSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHHH
T ss_pred ------eeeEeechhcccccCCCHHHHHHHhhhhc----cc--hhHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHH
Confidence 34789999877666789999998742111 11 112457889999999988887776 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeC--CeEEEEcC
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLAR--GRLVYMGS 282 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~--G~iv~~G~ 282 (820)
||+|||+|+.+|++|||||||+|||+.++.+++++|+++++ .|.|||++|||++. +..+||||++|++ |.+...++
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~-~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSI-HDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEeCCcceeccCCC
Confidence 99999999999999999999999999999999999999975 59999999999984 7889999999986 66777777
Q ss_pred ccchhh
Q 003437 283 PVALPA 288 (820)
Q Consensus 283 ~~~~~~ 288 (820)
+.++..
T Consensus 472 ~~~~~~ 477 (538)
T 3ozx_A 472 PVTLKT 477 (538)
T ss_dssp CEEHHH
T ss_pred hHHHHH
Confidence 766543
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-33 Score=329.89 Aligned_cols=192 Identities=22% Similarity=0.268 Sum_probs=162.2
Q ss_pred cceeeeeEEEeCC-----cEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCC
Q 003437 73 YLLHDISGQAIRG-----EIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPML 147 (820)
Q Consensus 73 ~iL~~vs~~i~~G-----e~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~l 147 (820)
.+++++|+++.+| |+++|+||||||||||+|+|+|+++| ++|+. +. +..++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC--CCCcC------cc----CCcEEEecccccccCCc
Confidence 4789999999988 78999999999999999999999864 56752 21 34589999997665567
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 003437 148 TVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTS 227 (820)
Q Consensus 148 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPts 227 (820)
||+|++.... +. ... ..+.++++++.++|.+..++.++ .|||||||||+|||+|+.+|++|||||||+
T Consensus 429 tv~e~~~~~~--~~--~~~---~~~~~~~~l~~l~l~~~~~~~~~-----~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKKI--RG--QFL---NPQFQTDVVKPLRIDDIIDQEVQ-----HLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHHC--SS--TTT---SHHHHHHTHHHHTSTTTSSSBSS-----SCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHHh--hc--ccc---cHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 9999875422 11 111 12457789999999988887765 699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeC--CeEEEEcCccchhhh
Q 003437 228 GLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLAR--GRLVYMGSPVALPAH 289 (820)
Q Consensus 228 gLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~--G~iv~~G~~~~~~~~ 289 (820)
|||+.++..++++|+++++ .|.|||++|||++. +..+||||++|++ |+++..|+|+++...
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~-~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIM-ATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH-HHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999964 69999999999974 7889999999996 899999999998754
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=4.8e-33 Score=338.10 Aligned_cols=200 Identities=24% Similarity=0.353 Sum_probs=167.8
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
+..|...|++++|++ +.+|+|+||++++||+++|+||||||||||||+|+| |+| +|.+
T Consensus 433 ~~~L~~~~ls~~yg~------------~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~ 490 (986)
T 2iw3_A 433 GEDLCNCEFSLAYGA------------KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFP 490 (986)
T ss_dssp SCEEEEEEEEEEETT------------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCC
T ss_pred cceeEEeeEEEEECC------------EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCc
Confidence 445888899999953 349999999999999999999999999999999996 332 4443
Q ss_pred CCCccccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCChH
Q 003437 125 VTTSYMKMVSSYVMQDD-QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 125 ~~~~~~~~~~gyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSGG 202 (820)
... ...++|++|+. .+++.+||.|++.+ .. ... .++++++++.+||. +..++.++ .||||
T Consensus 491 ~~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~---~~~-----~~~v~~~L~~lgL~~~~~~~~~~-----~LSGG 552 (986)
T 2iw3_A 491 TQE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SG---VGT-----KEAIKDKLIEFGFTDEMIAMPIS-----ALSGG 552 (986)
T ss_dssp CTT---TSCEEETTCCCCCCCTTSBHHHHHHT--TC---SSC-----HHHHHHHHHHTTCCHHHHHSBGG-----GCCHH
T ss_pred ccc---ceeEEEEcccccccccCCcHHHHHHH--hh---cCH-----HHHHHHHHHHcCCChhhhcCCcc-----cCCHH
Confidence 321 12368999985 67888999999975 11 111 46788999999995 56777776 59999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE-EEc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV-YMG 281 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G 281 (820)
|||||+||++|+.+|++|||||||+|||+.++..+.++|++ .|.|||++|||... +..+||++++|++|+++ +.|
T Consensus 553 qkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~~-l~~~adrii~L~~G~iv~~~G 628 (986)
T 2iw3_A 553 WKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSVF-LDNVCEYIINYEGLKLRKYKG 628 (986)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHHH-HHHHCSEEEEEETTEEEEEES
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHHH-HHHhCCEEEEEECCeeecCCC
Confidence 99999999999999999999999999999999999999988 58999999999874 78899999999999997 689
Q ss_pred Cccchhh
Q 003437 282 SPVALPA 288 (820)
Q Consensus 282 ~~~~~~~ 288 (820)
+++++..
T Consensus 629 ~~~e~~~ 635 (986)
T 2iw3_A 629 NFTEFVK 635 (986)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 8877654
No 53
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=9.3e-34 Score=339.21 Aligned_cols=208 Identities=23% Similarity=0.354 Sum_probs=141.1
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHH---------------------HHHHcCCCCCC-----CceEEEECCEeC
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFL---------------------DALAGRIAQGS-----LEGSVRIDGKPV 125 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl---------------------~~L~G~~~~~~-----~~G~I~i~G~~~ 125 (820)
+.+|+||||+|++||+++|+||||||||||+ +++.|+..+.. ..|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4599999999999999999999999999998 77777765431 156777877665
Q ss_pred CCccccceEEEEccCCC-------------------CCCCCCHHHHHHHHHHhcCCCCCCHHHHH------HHHHHHHHH
Q 003437 126 TTSYMKMVSSYVMQDDQ-------------------LFPMLTVFETFMFAAEVRLPPSISRDEKK------KRVYELLDQ 180 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~~-------------------l~~~lTV~e~l~~~~~~~~~~~~~~~~~~------~~v~~~l~~ 180 (820)
... .++.++||+|... .++.+||+||+.+........ ....... ....++++.
T Consensus 111 ~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 111 SRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTE-KEAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccch-hhhHHHHHHHHHHHHHHHHHHH
Confidence 422 2233455555432 346789999998754322110 0000000 112246889
Q ss_pred cCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 003437 181 LGLRSA-THTYIGNEGRRGVSGGERRRVSIGIDIIHKPS--LLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQ 257 (820)
Q Consensus 181 lgL~~~-~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~--lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~ 257 (820)
+||.+. .++.++ +|||||||||+|||||+.+|+ +|||||||+|||+.++..++++|++++++|.|||++|||
T Consensus 189 ~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999865 577665 699999999999999999998 999999999999999999999999998889999999999
Q ss_pred ccHHHHhhcCEEEEE------eCCeEEEEcCccchhh
Q 003437 258 PSYRIQMLLDRIIVL------ARGRLVYMGSPVALPA 288 (820)
Q Consensus 258 ~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~~ 288 (820)
++. + ..||++++| ++|++++.|+++++..
T Consensus 264 ~~~-~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 264 EDT-M-LAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp HHH-H-HHCSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred HHH-H-hhCCEEEEecccccccCCEEEEecCHHHHhc
Confidence 873 4 469999999 8999999999988753
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.9e-34 Score=337.74 Aligned_cols=193 Identities=24% Similarity=0.336 Sum_probs=157.5
Q ss_pred EEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEE---------EEC
Q 003437 51 KNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSV---------RID 121 (820)
Q Consensus 51 ~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I---------~i~ 121 (820)
+||+++|++. ..+|+|+| ++++||+++|+||||||||||||+|+|++.| ++|++ .++
T Consensus 95 ~~ls~~yg~~-----------~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p--~~G~~~~~~~~~~~~~~ 160 (607)
T 3bk7_A 95 EDCVHRYGVN-----------AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIP--NLCEDNDSWDNVIRAFR 160 (607)
T ss_dssp GSEEEECSTT-----------CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCC--CTTTTCCCHHHHHHHTT
T ss_pred CCeEEEECCC-----------CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCC--CCCccccccchhhheeC
Confidence 7778777421 13899999 9999999999999999999999999999854 56885 456
Q ss_pred CEeCCCc-----cccceEEEEccCCCCCC---CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 003437 122 GKPVTTS-----YMKMVSSYVMQDDQLFP---MLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGN 193 (820)
Q Consensus 122 G~~~~~~-----~~~~~~gyv~Q~~~l~~---~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~ 193 (820)
|.++... ..+..+++++|.....+ ..||.|++... . ..++++++++.+||++..++.++
T Consensus 161 G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~-------~-----~~~~~~~~L~~lgL~~~~~~~~~- 227 (607)
T 3bk7_A 161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV-------D-----EVGKFEEVVKELELENVLDRELH- 227 (607)
T ss_dssp TSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT-------C-----CSSCHHHHHHHTTCTTGGGSBGG-
T ss_pred CEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh-------H-----HHHHHHHHHHHcCCCchhCCChh-
Confidence 6654321 11234688888743322 13999998531 0 12357889999999988888876
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 194 EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 194 ~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
+|||||||||+||+||+.+|++|||||||++||+.++..++++|++++++|.|||+++||+.. +..+||+|++|+
T Consensus 228 ----~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~-~~~~adri~vl~ 302 (607)
T 3bk7_A 228 ----QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAV-LDYLSDVIHVVY 302 (607)
T ss_dssp ----GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHCSEEEEEE
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHH-HHhhCCEEEEEC
Confidence 699999999999999999999999999999999999999999999998889999999999874 778999999998
Q ss_pred CC
Q 003437 274 RG 275 (820)
Q Consensus 274 ~G 275 (820)
++
T Consensus 303 ~~ 304 (607)
T 3bk7_A 303 GE 304 (607)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=4.7e-34 Score=332.43 Aligned_cols=196 Identities=24% Similarity=0.344 Sum_probs=158.0
Q ss_pred EEE-EEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEE--------
Q 003437 48 LEF-KNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSV-------- 118 (820)
Q Consensus 48 L~~-~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I-------- 118 (820)
.++ +||+++|++. ..+|+|+| +|++||+++|+||||||||||||+|+|++.| ++|++
T Consensus 21 ~~~~~~ls~~yg~~-----------~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p--~~G~~~~~~~~~~ 86 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN-----------AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIP--NLCGDNDSWDGVI 86 (538)
T ss_dssp ---CCCEEEECSTT-----------CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC--CTTTTCCSHHHHH
T ss_pred hhHhcCcEEEECCc-----------cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCccCcchhhhH
Confidence 455 5899998531 13899999 9999999999999999999999999999854 56885
Q ss_pred -EECCEeCCCc-----cccceEEEEccCCCCCCC---CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 003437 119 -RIDGKPVTTS-----YMKMVSSYVMQDDQLFPM---LTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHT 189 (820)
Q Consensus 119 -~i~G~~~~~~-----~~~~~~gyv~Q~~~l~~~---lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 189 (820)
.++|.++... ..+..+++++|+..+++. .||.|++... +..++++++++.+||++..++
T Consensus 87 ~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~------------~~~~~~~~~l~~lgl~~~~~~ 154 (538)
T 1yqt_A 87 RAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA------------DETGKLEEVVKALELENVLER 154 (538)
T ss_dssp HHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH------------CSSSCHHHHHHHTTCTTTTTS
T ss_pred HhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh------------hHHHHHHHHHHHcCCChhhhC
Confidence 4566554210 112346899987543332 3899887531 012457889999999988888
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEE
Q 003437 190 YIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRI 269 (820)
Q Consensus 190 ~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 269 (820)
.++ +|||||||||+||+||+.+|++|||||||++||+.++..++++|++++++|.|||++||+.. .+..+||+|
T Consensus 155 ~~~-----~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri 228 (538)
T 1yqt_A 155 EIQ-----HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDII 228 (538)
T ss_dssp BGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEE
T ss_pred Chh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 775 69999999999999999999999999999999999999999999999888999999999987 478899999
Q ss_pred EEEeCC
Q 003437 270 IVLARG 275 (820)
Q Consensus 270 ~lL~~G 275 (820)
++|++|
T Consensus 229 ~vl~~~ 234 (538)
T 1yqt_A 229 HVVYGE 234 (538)
T ss_dssp EEEEEE
T ss_pred EEEcCc
Confidence 999864
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.6e-33 Score=339.20 Aligned_cols=208 Identities=24% Similarity=0.378 Sum_probs=161.4
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++. .+.+|+|+||++++||+++|+||||||||||+|+|+|++. +++|+|.++|.
T Consensus 670 ~mL~v~nLs~~Y~g~----------~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~--P~sG~I~~~~~-- 735 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGT----------SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL--PTSGEVYTHEN-- 735 (986)
T ss_dssp EEEEEEEEEECCTTC----------SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC--CSEEEEEECTT--
T ss_pred ceEEEEeeEEEeCCC----------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEcCc--
Confidence 469999999998531 1358999999999999999999999999999999999985 46899999862
Q ss_pred CCccccceEEEEccCCCC----CCCCCHHHHHHHHHHhc------------CC---------------------------
Q 003437 126 TTSYMKMVSSYVMQDDQL----FPMLTVFETFMFAAEVR------------LP--------------------------- 162 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~~l----~~~lTV~e~l~~~~~~~------------~~--------------------------- 162 (820)
..++|++|+... ....|+.|++.+..... ..
T Consensus 736 ------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~ 809 (986)
T 2iw3_A 736 ------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRR 809 (986)
T ss_dssp ------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEE
T ss_pred ------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhh
Confidence 136888886421 12357777765421100 00
Q ss_pred -------------------------CCC----------------------------------CHHHHHHHHHHHHHHcCC
Q 003437 163 -------------------------PSI----------------------------------SRDEKKKRVYELLDQLGL 183 (820)
Q Consensus 163 -------------------------~~~----------------------------------~~~~~~~~v~~~l~~lgL 183 (820)
..+ .+....++++++++.+||
T Consensus 810 ~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL 889 (986)
T 2iw3_A 810 KFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGL 889 (986)
T ss_dssp EETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred hhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCC
Confidence 000 000113568899999999
Q ss_pred Ccc--ccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHH
Q 003437 184 RSA--THTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYR 261 (820)
Q Consensus 184 ~~~--~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 261 (820)
.+. .++.++ +|||||||||+|||+|+.+|++|||||||+|||+.+...+++.|+++ |.|||++|||++.
T Consensus 890 ~~~~~~~~~~~-----~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e~- 960 (986)
T 2iw3_A 890 DPEIVSHSRIR-----GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAEF- 960 (986)
T ss_dssp CHHHHHHSCGG-----GCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHHH-
T ss_pred CchhhcCCCcc-----ccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHHH-
Confidence 753 466665 69999999999999999999999999999999999999999988765 6799999999874
Q ss_pred HHhhcCEEEEEeCCeEEEEcC
Q 003437 262 IQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 262 i~~~~D~v~lL~~G~iv~~G~ 282 (820)
+..+||++++|++|+++..|+
T Consensus 961 v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 961 TKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp HTTTCCEEECCBTTBCCC---
T ss_pred HHHhCCEEEEEECCEEEEeCC
Confidence 778999999999999987764
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.98 E-value=2.5e-32 Score=326.84 Aligned_cols=196 Identities=28% Similarity=0.419 Sum_probs=150.8
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH----------------------cCCCCCCCceEEEECCEeCCCccc
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALA----------------------GRIAQGSLEGSVRIDGKPVTTSYM 130 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~----------------------G~~~~~~~~G~I~i~G~~~~~~~~ 130 (820)
.+|+|||++|++||+++|+||||||||||+++|. |+. ...|.|.++|.++.....
T Consensus 336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~---~~~~~i~~~~~~~~~~~~ 412 (670)
T 3ux8_A 336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE---HLDKVIDIDQSPIGRTPR 412 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG---GCSEEEECCSSCSCSSTT
T ss_pred cccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc---ccCceeEeccccCCCCCC
Confidence 4899999999999999999999999999998764 221 134788888877642100
Q ss_pred --------------------------------------------cceEEEEccCCCCCC---------------------
Q 003437 131 --------------------------------------------KMVSSYVMQDDQLFP--------------------- 145 (820)
Q Consensus 131 --------------------------------------------~~~~gyv~Q~~~l~~--------------------- 145 (820)
....|+++|+..++|
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (670)
T 3ux8_A 413 SNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEV 492 (670)
T ss_dssp CCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTC
T ss_pred cchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhe
Confidence 001234444333322
Q ss_pred -----------CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChHHHHHHHHHHHH
Q 003437 146 -----------MLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGRRGVSGGERRRVSIGIDI 213 (820)
Q Consensus 146 -----------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSGGerqRv~ia~aL 213 (820)
.+||.||+.+.... . ..+++.+.++.+||.. ..++.++ +|||||||||+|||||
T Consensus 493 ~~~~~~~~~~~~ltv~e~l~~~~~~-------~--~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~iAraL 558 (670)
T 3ux8_A 493 TYKGKNIAEVLDMTVEDALDFFASI-------P--KIKRKLETLYDVGLGYMKLGQPAT-----TLSGGEAQRVKLAAEL 558 (670)
T ss_dssp CBTTBCHHHHHTSBHHHHHHHTTTC-------H--HHHHHHHHHHHTTCTTSBTTCCGG-----GCCHHHHHHHHHHHHH
T ss_pred eecCCCHHHHhhCCHHHHHHHHHHh-------h--hHHHHHHHHHHcCCchhhccCCch-----hCCHHHHHHHHHHHHH
Confidence 47999999875321 1 2345677888999964 3455554 6999999999999999
Q ss_pred hcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE------eCCeEEEEcCcc
Q 003437 214 IHKP---SLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL------ARGRLVYMGSPV 284 (820)
Q Consensus 214 ~~~P---~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~ 284 (820)
+.+| ++|||||||+|||+.++..++++|++++++|.|||++|||++. + ..||+|++| ++|++++.|+++
T Consensus 559 ~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~-~-~~~d~i~~l~~~~g~~~G~i~~~g~~~ 636 (670)
T 3ux8_A 559 HRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDV-I-KTADYIIDLGPEGGDRGGQIVAVGTPE 636 (670)
T ss_dssp HSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-H-TTCSEEEEEESSSGGGCCEEEEEECHH
T ss_pred hhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-H-HhCCEEEEecCCcCCCCCEEEEecCHH
Confidence 9987 5999999999999999999999999998889999999999974 4 579999999 899999999998
Q ss_pred chh
Q 003437 285 ALP 287 (820)
Q Consensus 285 ~~~ 287 (820)
++.
T Consensus 637 ~~~ 639 (670)
T 3ux8_A 637 EVA 639 (670)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.7e-31 Score=309.31 Aligned_cols=188 Identities=23% Similarity=0.335 Sum_probs=143.9
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEE-----------EECCEeCCCc---cccce--EEE
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSV-----------RIDGKPVTTS---YMKMV--SSY 136 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I-----------~i~G~~~~~~---~~~~~--~gy 136 (820)
..|++++ .+++||+++|+||||||||||||+|+|++.| ++|+| .+.|.++... ...+. ..+
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P--~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 168 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKP--NLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAII 168 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC--CTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCC--CCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhh
Confidence 3677777 6899999999999999999999999999864 57987 3334332110 00111 123
Q ss_pred EccCCCC------CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHH
Q 003437 137 VMQDDQL------FPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIG 210 (820)
Q Consensus 137 v~Q~~~l------~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia 210 (820)
.+|.... -+..++.+++.... . +..++++++++.+||.+..++.++ +|||||||||+||
T Consensus 169 ~~~~~~~~~~~~~~~~~~v~~~l~~~~------~----~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGe~Qrv~iA 233 (608)
T 3j16_B 169 KPQYVDNIPRAIKGPVQKVGELLKLRM------E----KSPEDVKRYIKILQLENVLKRDIE-----KLSGGELQRFAIG 233 (608)
T ss_dssp ECCCTTTHHHHCSSSSSHHHHHHHHHC------C----SCHHHHHHHHHHHTCTGGGGSCTT-----TCCHHHHHHHHHH
T ss_pred chhhhhhhhhhhcchhhHHHHHHhhhh------h----hHHHHHHHHHHHcCCcchhCCChH-----HCCHHHHHHHHHH
Confidence 3443211 12235666554221 0 123568899999999998888775 6999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 211 IDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 211 ~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
+||+.+|++|||||||++||+.++..+.++|++++++|.|||+++|+++. +..+||+|++|++|..++
T Consensus 234 raL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~-~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 234 MSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSV-LDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHH-HHHHCSEEEEEESCTTTE
T ss_pred HHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEeCCcccc
Confidence 99999999999999999999999999999999998889999999999974 888999999998875443
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=2.9e-31 Score=308.34 Aligned_cols=174 Identities=20% Similarity=0.314 Sum_probs=138.6
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEE-----------EECCEeCCCc-----cccceEEEEccC----C
Q 003437 82 AIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSV-----------RIDGKPVTTS-----YMKMVSSYVMQD----D 141 (820)
Q Consensus 82 i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I-----------~i~G~~~~~~-----~~~~~~gyv~Q~----~ 141 (820)
.++||++||+||||||||||||+|+|++.| ++|+| .++|.++... .....+..+.|. +
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p--~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIP--NFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCC--CTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 358999999999999999999999999854 57988 6777665311 001123333333 3
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEE
Q 003437 142 QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLF 221 (820)
Q Consensus 142 ~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLl 221 (820)
.++. .||.|++... +..++++++++.+|+.+..++.++ .|||||||||+||+||+.+|++||
T Consensus 100 ~~~~-~~v~~~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~Qrv~iA~aL~~~p~ill 161 (538)
T 3ozx_A 100 KFLK-GTVNEILTKI------------DERGKKDEVKELLNMTNLWNKDAN-----ILSGGGLQRLLVAASLLREADVYI 161 (538)
T ss_dssp TTCC-SBHHHHHHHH------------CCSSCHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred hhcc-CcHHHHhhcc------------hhHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEE
Confidence 3333 3888765421 112357789999999998888876 699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 222 LDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 222 lDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
|||||++||+.++..+.++|+++++ |+|||+++|+++ .+..+||+|++|++|..
T Consensus 162 lDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~~~~~ 215 (538)
T 3ozx_A 162 FDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIYGESS 215 (538)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEEEETT
T ss_pred EECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEecCCcc
Confidence 9999999999999999999999976 999999999997 48889999999987543
No 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.96 E-value=9.2e-30 Score=306.86 Aligned_cols=211 Identities=26% Similarity=0.402 Sum_probs=160.0
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHH-HHcCCC-------C-----
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDA-LAGRIA-------Q----- 111 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~-L~G~~~-------~----- 111 (820)
...|+++|+++. .|+|||++|++||+++|+|+||||||||+++ |+|++. +
T Consensus 500 ~~~L~v~~l~~~-----------------~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~ 562 (842)
T 2vf7_A 500 AGWLELNGVTRN-----------------NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPED 562 (842)
T ss_dssp SCEEEEEEEEET-----------------TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC--------
T ss_pred CceEEEEeeeec-----------------ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccc
Confidence 345999999741 6999999999999999999999999999996 776531 1
Q ss_pred -----------CCCce-------EEEECCEeCCCccc-------------c---------ceEEEEcc------------
Q 003437 112 -----------GSLEG-------SVRIDGKPVTTSYM-------------K---------MVSSYVMQ------------ 139 (820)
Q Consensus 112 -----------~~~~G-------~I~i~G~~~~~~~~-------------~---------~~~gyv~Q------------ 139 (820)
.+.+| .|.++|.++..... + +..||.++
T Consensus 563 ~~~~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~ 642 (842)
T 2vf7_A 563 DEDPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCE 642 (842)
T ss_dssp ---------CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCT
T ss_pred cccccccccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccc
Confidence 11367 78999987742110 0 01122211
Q ss_pred ----------CCCCCC------------------------C--------CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 003437 140 ----------DDQLFP------------------------M--------LTVFETFMFAAEVRLPPSISRDEKKKRVYEL 177 (820)
Q Consensus 140 ----------~~~l~~------------------------~--------lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~ 177 (820)
+..+++ . +||.|++.|... .. ..+++.++
T Consensus 643 ~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~-------~~--~~~~~~~~ 713 (842)
T 2vf7_A 643 HCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD-------ES--AIFRALDT 713 (842)
T ss_dssp TTTTCSEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT-------SH--HHHHHHHH
T ss_pred cccCCCccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc-------ch--HHHHHHHH
Confidence 111222 2 345555444211 11 23478899
Q ss_pred HHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE
Q 003437 178 LDQLGLRSA-THTYIGNEGRRGVSGGERRRVSIGIDIIHK---PSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLM 253 (820)
Q Consensus 178 l~~lgL~~~-~~~~ig~~~~~~LSGGerqRv~ia~aL~~~---P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~ 253 (820)
|+.+||... .++.+. .|||||||||+||++|+.+ |+||||||||+|||+.+...++++|++++++|.|||+
T Consensus 714 L~~~gL~~~~l~~~~~-----~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIv 788 (842)
T 2vf7_A 714 LREVGLGYLRLGQPAT-----ELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIA 788 (842)
T ss_dssp HHHTTCTTSBTTCCGG-----GCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHcCCCcccccCCcc-----cCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999863 455554 6999999999999999996 7999999999999999999999999999988999999
Q ss_pred EEcCccHHHHhhcCEEEEE------eCCeEEEEcCccchhh
Q 003437 254 TIHQPSYRIQMLLDRIIVL------ARGRLVYMGSPVALPA 288 (820)
Q Consensus 254 ~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~~ 288 (820)
++|+++. + ..||+|++| ++|++++.|+++++..
T Consensus 789 isHdl~~-i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~ 827 (842)
T 2vf7_A 789 VEHKMQV-V-AASDWVLDIGPGAGEDGGRLVAQGTPAEVAQ 827 (842)
T ss_dssp ECCCHHH-H-TTCSEEEEECSSSGGGCCSEEEEECHHHHTT
T ss_pred EcCCHHH-H-HhCCEEEEECCCCCCCCCEEEEEcCHHHHHh
Confidence 9999874 5 789999999 7899999999988753
No 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=1.2e-29 Score=308.07 Aligned_cols=200 Identities=27% Similarity=0.403 Sum_probs=153.9
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHH---------HHHHcCCCCC----CCc------eEEEECCEeCCCcc----
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFL---------DALAGRIAQG----SLE------GSVRIDGKPVTTSY---- 129 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl---------~~L~G~~~~~----~~~------G~I~i~G~~~~~~~---- 129 (820)
..|+|||++|++|++++|+||||||||||+ +.+.+...+. ..+ +.|.+++.++....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 379999999999999999999999999997 4444432111 112 34566655542100
Q ss_pred ----------------------------------------ccceEEEEccCCCCCC------------------------
Q 003437 130 ----------------------------------------MKMVSSYVMQDDQLFP------------------------ 145 (820)
Q Consensus 130 ----------------------------------------~~~~~gyv~Q~~~l~~------------------------ 145 (820)
..+..||+.|+..++|
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0012367777766655
Q ss_pred --------CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHhcC
Q 003437 146 --------MLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEGRRGVSGGERRRVSIGIDIIHK 216 (820)
Q Consensus 146 --------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSGGerqRv~ia~aL~~~ 216 (820)
.+||.|++.|.... ....++.++|+.+||... .+.. +.+|||||||||+||++|+.+
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~lgq~-----~~~LSGGErQRV~LAraL~~~ 823 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVKLGQP-----ATTLSGGEAQRIKLASELRKR 823 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSBTTCC-----STTCCHHHHHHHHHHHHHTSC
T ss_pred cCCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhhccCC-----ccCCCHHHHHHHHHHHHHhhC
Confidence 36888888875321 123567889999999753 2333 357999999999999999987
Q ss_pred C---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE------eCCeEEEEcCccchh
Q 003437 217 P---SLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL------ARGRLVYMGSPVALP 287 (820)
Q Consensus 217 P---~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 287 (820)
| +||||||||+|||+.+...+++.|++++++|.|||+++|+++. + ..||+|++| ++|+|++.|+++++.
T Consensus 824 p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~-i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 824 DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDV-I-KNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-H-TTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 5 7999999999999999999999999999889999999999963 5 459999999 899999999999886
Q ss_pred h
Q 003437 288 A 288 (820)
Q Consensus 288 ~ 288 (820)
.
T Consensus 902 ~ 902 (916)
T 3pih_A 902 K 902 (916)
T ss_dssp S
T ss_pred h
Confidence 4
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.96 E-value=5.7e-30 Score=308.82 Aligned_cols=210 Identities=29% Similarity=0.410 Sum_probs=161.9
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH-cCC---------CCCC--
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALA-GRI---------AQGS-- 113 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~-G~~---------~~~~-- 113 (820)
..|+++|++. ..|+|||++|++||+++|+|+||||||||+++|. |.+ .++.
T Consensus 628 ~~L~v~~l~~-----------------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~ 690 (972)
T 2r6f_A 628 RWLEVVGARE-----------------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHR 690 (972)
T ss_dssp CEEEEEEECS-----------------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCS
T ss_pred eEEEEecCcc-----------------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcee
Confidence 4588888752 2699999999999999999999999999999854 211 1111
Q ss_pred -Cce------EEEECCEeCCCccc----------------------cceEEEEccCCCCC--------------------
Q 003437 114 -LEG------SVRIDGKPVTTSYM----------------------KMVSSYVMQDDQLF-------------------- 144 (820)
Q Consensus 114 -~~G------~I~i~G~~~~~~~~----------------------~~~~gyv~Q~~~l~-------------------- 144 (820)
..| .|.++|.++..... .+..||++|...+.
T Consensus 691 ~i~G~~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~ 770 (972)
T 2r6f_A 691 DIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMH 770 (972)
T ss_dssp EEECGGGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCS
T ss_pred eeccccccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehh
Confidence 123 58899888742100 12346777743221
Q ss_pred --C--------------------------------CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccc
Q 003437 145 --P--------------------------------MLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHT 189 (820)
Q Consensus 145 --~--------------------------------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~ 189 (820)
+ .+||.|++.|... . . ..+++.++|+.+||.. ..++
T Consensus 771 fl~~v~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~------~-~--~~~~~~~~L~~~gL~~~~l~~ 841 (972)
T 2r6f_A 771 FLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS------I-P--KIKRKLETLYDVGLGYMKLGQ 841 (972)
T ss_dssp SSCCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS------C-H--HHHHHHHHHHHTTCSSSBTTC
T ss_pred ccccccccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc------c-h--hHHHHHHHHHHcCCCcccccC
Confidence 1 3578888776421 1 1 1234678999999987 5666
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhc
Q 003437 190 YIGNEGRRGVSGGERRRVSIGIDIIHKP---SLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLL 266 (820)
Q Consensus 190 ~ig~~~~~~LSGGerqRv~ia~aL~~~P---~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 266 (820)
.+. .|||||||||+||++|+.+| ++|||||||+|||+.++..++++|++++++|.|||+++|+++. + ..|
T Consensus 842 ~~~-----~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~-i-~~a 914 (972)
T 2r6f_A 842 PAT-----TLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDV-I-KTA 914 (972)
T ss_dssp CGG-----GCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-H-TTC
T ss_pred chh-----hCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH-H-HhC
Confidence 654 69999999999999999865 9999999999999999999999999999889999999999874 4 579
Q ss_pred CEEEEE------eCCeEEEEcCccchhh
Q 003437 267 DRIIVL------ARGRLVYMGSPVALPA 288 (820)
Q Consensus 267 D~v~lL------~~G~iv~~G~~~~~~~ 288 (820)
|+|++| ++|++++.|+++++..
T Consensus 915 DrIivL~p~gG~~~G~Iv~~g~~~el~~ 942 (972)
T 2r6f_A 915 DYIIDLGPEGGDRGGQIVAVGTPEEVAE 942 (972)
T ss_dssp SEEEEECSSSTTSCCSEEEEESHHHHHT
T ss_pred CEEEEEcCCCCCCCCEEEEecCHHHHHh
Confidence 999999 6899999999988753
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.96 E-value=2.3e-29 Score=304.67 Aligned_cols=210 Identities=26% Similarity=0.367 Sum_probs=158.6
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH-c----CCCCC-CCce---
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALA-G----RIAQG-SLEG--- 116 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~-G----~~~~~-~~~G--- 116 (820)
..|+++|++. .+|+|||++|++||+++|+|+||||||||+++|. | .+.+. +..|
T Consensus 646 ~~L~v~~l~~-----------------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~ 708 (993)
T 2ygr_A 646 RQLTVVGARE-----------------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHT 708 (993)
T ss_dssp SEEEEEEECS-----------------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEE
T ss_pred ceEEEecCcc-----------------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCcee
Confidence 4588888751 2699999999999999999999999999999853 2 22110 1123
Q ss_pred ----------EEEECCEeCCCcc----------------------ccceEEEEccCCCC---------------------
Q 003437 117 ----------SVRIDGKPVTTSY----------------------MKMVSSYVMQDDQL--------------------- 143 (820)
Q Consensus 117 ----------~I~i~G~~~~~~~----------------------~~~~~gyv~Q~~~l--------------------- 143 (820)
.|.+++.++.... ..+..||++|...+
T Consensus 709 ~i~G~~~~~~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~ 788 (993)
T 2ygr_A 709 RVTGLDYLDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMN 788 (993)
T ss_dssp EECCCTTCSEEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCT
T ss_pred eecCccccceEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhh
Confidence 3556666553110 01224666664322
Q ss_pred -CC--------------------------------CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccc
Q 003437 144 -FP--------------------------------MLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHT 189 (820)
Q Consensus 144 -~~--------------------------------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~ 189 (820)
++ .+||.|++.|... . . ..+++.++|+.+||.. ..+.
T Consensus 789 fl~~v~~~ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~------~-~--~~~~~~~~L~~lgL~~~~l~~ 859 (993)
T 2ygr_A 789 FLPDVYVPCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP------I-A--GVHRYLRTLVDVGLGYVRLGQ 859 (993)
T ss_dssp TSCCEEEECTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT------C-H--HHHHHHHHHHHTTGGGSBTTC
T ss_pred ccccceeeehhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc------c-h--HHHHHHHHHHHcCCCcccccC
Confidence 11 3577777776432 1 1 1234678999999976 4566
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhc
Q 003437 190 YIGNEGRRGVSGGERRRVSIGIDIIHKP---SLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLL 266 (820)
Q Consensus 190 ~ig~~~~~~LSGGerqRv~ia~aL~~~P---~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 266 (820)
.+. .|||||||||+||++|+.+| ++|||||||+|||+.+...++++|++++++|.|||+++|+++. + ..|
T Consensus 860 ~~~-----~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~-i-~~a 932 (993)
T 2ygr_A 860 PAP-----TLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDV-I-KTS 932 (993)
T ss_dssp CGG-----GSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-H-TTC
T ss_pred ccc-----cCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH-H-HhC
Confidence 554 69999999999999999865 9999999999999999999999999999889999999999874 5 679
Q ss_pred CEEEEE------eCCeEEEEcCccchhh
Q 003437 267 DRIIVL------ARGRLVYMGSPVALPA 288 (820)
Q Consensus 267 D~v~lL------~~G~iv~~G~~~~~~~ 288 (820)
|+|++| ++|++++.|+++++..
T Consensus 933 DrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 933 DWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp SEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred CEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 999999 6899999999988754
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.95 E-value=1.7e-27 Score=268.78 Aligned_cols=204 Identities=21% Similarity=0.246 Sum_probs=148.2
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC------------------------------------CCCce
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ------------------------------------GSLEG 116 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~------------------------------------~~~~G 116 (820)
.+|+++++++.+| +++|+|||||||||||++|+++... .+.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3799999999999 9999999999999999999887642 12368
Q ss_pred EEEECCEeCCCcc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhc-----------------------CCCCCC---
Q 003437 117 SVRIDGKPVTTSY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVR-----------------------LPPSIS--- 166 (820)
Q Consensus 117 ~I~i~G~~~~~~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~-----------------------~~~~~~--- 166 (820)
++++||++++... .+..+++++|++.++.. +..+...|.-... ......
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 9999999986421 23347999999876543 5554444321100 000000
Q ss_pred -------------------------------HHHHHHHHHHHHHHcCCCccc----------------cc---cccC---
Q 003437 167 -------------------------------RDEKKKRVYELLDQLGLRSAT----------------HT---YIGN--- 193 (820)
Q Consensus 167 -------------------------------~~~~~~~v~~~l~~lgL~~~~----------------~~---~ig~--- 193 (820)
.....+.+.+.++.+++.+.. +. .+..
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 001123455667777765410 00 1110
Q ss_pred ---CCCCC-CChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcC
Q 003437 194 ---EGRRG-VSGGERRRVSIGIDIIHKP--SLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLD 267 (820)
Q Consensus 194 ---~~~~~-LSGGerqRv~ia~aL~~~P--~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 267 (820)
...+. |||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||++||++. +...||
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhcC
Confidence 01112 6999999999999999999 9999999999999999999999999998 5899999999985 457899
Q ss_pred EEEEE----eCCeEEEEc
Q 003437 268 RIIVL----ARGRLVYMG 281 (820)
Q Consensus 268 ~v~lL----~~G~iv~~G 281 (820)
++++| ++|+++...
T Consensus 364 ~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 364 HHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEEEETTEEEEEE
T ss_pred eEEEEEEeccCCceEEEE
Confidence 99999 999987653
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.5e-30 Score=293.68 Aligned_cols=186 Identities=11% Similarity=0.105 Sum_probs=148.3
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCce-E-EEECCEeCCCccccceEEEEccCCC---CCCCCCH
Q 003437 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEG-S-VRIDGKPVTTSYMKMVSSYVMQDDQ---LFPMLTV 149 (820)
Q Consensus 75 L~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G-~-I~i~G~~~~~~~~~~~~gyv~Q~~~---l~~~lTV 149 (820)
+.++|+++++|++++|+||||||||||+|+|+|+.. +.+| + |++||. .++.++|++|+.. +.+.+||
T Consensus 128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 347889999999999999999999999999999885 4689 9 999982 2566899999984 4556799
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHH--HhcCCCE----EEEe
Q 003437 150 FETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGID--IIHKPSL----LFLD 223 (820)
Q Consensus 150 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~a--L~~~P~l----LllD 223 (820)
+||+ |+...... .. ..+++.++++.+||++..+ . .+|||||||||+||++ |+.+|++ ||||
T Consensus 200 ~eni-~~~~~~~~--~~---~~~~~~~ll~~~gl~~~~~--~-----~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLD 266 (460)
T 2npi_A 200 QLPT-WGQSLTSG--AT---LLHNKQPMVKNFGLERINE--N-----KDLYLECISQLGQVVGQRLHLDPQVRRSGCIVD 266 (460)
T ss_dssp TCTT-CSCBCBSS--CC---SSCCBCCEECCCCSSSGGG--C-----HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEE
T ss_pred hhhh-cccccccC--cc---hHHHHHHHHHHhCCCcccc--h-----hhhhHHHHHHHHHHHHHHhccCcccCcceEEEe
Confidence 9998 65432111 00 1234567788899987665 2 3699999999999999 9999999 9999
Q ss_pred C-CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCcc--H---HHHhhcCE-----EEEEe-CCeEEEEcCccch
Q 003437 224 E-PTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS--Y---RIQMLLDR-----IIVLA-RGRLVYMGSPVAL 286 (820)
Q Consensus 224 E-PtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~--~---~i~~~~D~-----v~lL~-~G~iv~~G~~~~~ 286 (820)
| ||++||+. ...+.+++++ .+.|+|+++|+.+ . .+..+||+ |++|+ +|+++ .|+++++
T Consensus 267 EpPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 267 TPSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp CCCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred CCcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 9 99999999 4444444443 3789999999987 2 36688999 99999 99999 8988665
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.91 E-value=2.3e-24 Score=239.60 Aligned_cols=83 Identities=27% Similarity=0.497 Sum_probs=76.5
Q ss_pred CCCCCChHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCE
Q 003437 195 GRRGVSGGERRRVSIGIDII------HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDR 268 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~------~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 268 (820)
.+.+|||||||||+||++|+ .+|++|||||||+|||+.++..+++.|++++++|.|||++||+++. ...||+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~--~~~~d~ 353 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF--SEAFDR 353 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH--HTTCSC
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH--HHhCCE
Confidence 34579999999999999999 7999999999999999999999999999998889999999999863 567999
Q ss_pred EEEEeCCeEEE
Q 003437 269 IIVLARGRLVY 279 (820)
Q Consensus 269 v~lL~~G~iv~ 279 (820)
+++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999874
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.91 E-value=8.8e-28 Score=246.42 Aligned_cols=142 Identities=15% Similarity=0.134 Sum_probs=101.5
Q ss_pred cccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC--CccccceEEEEccCCCCCCCCC
Q 003437 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT--TSYMKMVSSYVMQDDQLFPMLT 148 (820)
Q Consensus 71 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~--~~~~~~~~gyv~Q~~~l~~~lT 148 (820)
++.+|+|+ ++||+++|+||||||||||+|+|+|+ +| ++|+|.. .++. ....++.+|||+|++
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p--~~G~I~~--~~~~~~~~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL--QSKQVSR--IILTRPAVEAGEKLGFLPGTL------- 75 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH--HTTSCSE--EEEEECSCCTTCCCCSSCC---------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC--cCCeeee--EEecCCchhhhcceEEecCCH-------
Confidence 34689996 89999999999999999999999998 54 5788842 2221 122456789999976
Q ss_pred HHHHH-HHHH----HhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEe
Q 003437 149 VFETF-MFAA----EVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLD 223 (820)
Q Consensus 149 V~e~l-~~~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllD 223 (820)
+||+ .+.. .+.. ... .++++++++. |+ ||||||+|||+|+.+|++||||
T Consensus 76 -~enl~~~~~~~~~~~~~--~~~----~~~~~~~l~~-gl------------------Gq~qrv~lAraL~~~p~lllLD 129 (208)
T 3b85_A 76 -NEKIDPYLRPLHDALRD--MVE----PEVIPKLMEA-GI------------------VEVAPLAYMRGRTLNDAFVILD 129 (208)
T ss_dssp -----CTTTHHHHHHHTT--TSC----TTHHHHHHHT-TS------------------EEEEEGGGGTTCCBCSEEEEEC
T ss_pred -HHHHHHHHHHHHHHHHH--hcc----HHHHHHHHHh-CC------------------chHHHHHHHHHHhcCCCEEEEe
Confidence 4444 2211 1110 001 1345555554 32 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccH
Q 003437 224 EPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 224 EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
|||+| ++..++++|+++ ++|+||| +|||++.
T Consensus 130 EPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~~ 160 (208)
T 3b85_A 130 EAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDITQ 160 (208)
T ss_dssp SGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC---
T ss_pred CCccc----cHHHHHHHHHHh-cCCCEEE-EECCHHH
Confidence 99999 889999999998 6789999 9999863
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=1.1e-23 Score=230.26 Aligned_cols=87 Identities=18% Similarity=0.214 Sum_probs=72.7
Q ss_pred CCCCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEE--
Q 003437 196 RRGVSGGERRRVSIGIDII----HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRI-- 269 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~----~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v-- 269 (820)
+..||||||||++||++|+ .+|++|||||||++||+.....+.+.|++++ +|.+||++||++. +...||++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~ 293 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHG 293 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEE
Confidence 3479999999999999997 6889999999999999999999999999985 5899999999974 56789987
Q ss_pred EEEeCCe-EEEEcCccc
Q 003437 270 IVLARGR-LVYMGSPVA 285 (820)
Q Consensus 270 ~lL~~G~-iv~~G~~~~ 285 (820)
++|.+|+ .+.....++
T Consensus 294 v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEESSSCEEEEECCC--
T ss_pred EEEeCCEEEEEEEEcch
Confidence 7888874 444444443
No 69
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.89 E-value=1.9e-24 Score=214.70 Aligned_cols=144 Identities=15% Similarity=0.179 Sum_probs=102.7
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCC-CCCCHHHHHHH
Q 003437 77 DISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLF-PMLTVFETFMF 155 (820)
Q Consensus 77 ~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~-~~lTV~e~l~~ 155 (820)
||||++++||+++|+||||||||||+|++.+ |...+++. ...|+++|++.-. ..-++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~--------~~~~~~~d--------~~~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK--------PTEVISSD--------FCRGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC--------GGGEEEHH--------HHHHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc--------CCeEEccH--------HHHHHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999653 21112110 1126777764210 0001112111
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH---
Q 003437 156 AAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDST--- 232 (820)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~--- 232 (820)
.... .....|.....+.. ...|||||||++||++++.+|++|+|||||++||+.
T Consensus 64 ----------------~~~~-~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 ----------------YIVS-KRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp ----------------HHHH-HHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred ----------------HHHH-HHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 1111 22234554444332 247999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhCCcEEEEEEcCccH
Q 003437 233 -------------SAYSVVEKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 233 -------------~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
...++.+.|++++++|.|+|+++|+++.
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~ 161 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEE 161 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHH
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHH
Confidence 6689999999998789999999999874
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.88 E-value=4.5e-26 Score=255.74 Aligned_cols=170 Identities=18% Similarity=0.236 Sum_probs=136.5
Q ss_pred ccceeeeeEEEeCCc--------------------EEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCcccc
Q 003437 72 AYLLHDISGQAIRGE--------------------IMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMK 131 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge--------------------~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~ 131 (820)
+.+|++||+++++|+ +++|+||||||||||+|+|+|+.. +.+|+|.++|.+++ +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~t----~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEVT----M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC--------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeecc----e
Confidence 458999999999999 999999999999999999999885 46799999997753 1
Q ss_pred ceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH--HHHHHHH
Q 003437 132 MVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG--ERRRVSI 209 (820)
Q Consensus 132 ~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG--erqRv~i 209 (820)
+ +|++|++ .++.+|+.|++.+... +.+++++++.+++.+.. ..+ .|||| ||||+.|
T Consensus 110 ~--~~v~q~~-~~~~ltv~D~~g~~~~------------~~~~~~~L~~~~L~~~~-~~~------~lS~G~~~kqrv~l 167 (413)
T 1tq4_A 110 E--RHPYKHP-NIPNVVFWDLPGIGST------------NFPPDTYLEKMKFYEYD-FFI------IISATRFKKNDIDI 167 (413)
T ss_dssp C--CEEEECS-SCTTEEEEECCCGGGS------------SCCHHHHHHHTTGGGCS-EEE------EEESSCCCHHHHHH
T ss_pred e--EEecccc-ccCCeeehHhhcccch------------HHHHHHHHHHcCCCccC-CeE------EeCCCCccHHHHHH
Confidence 2 7899985 5778899888754310 13477889999987653 222 29999 9999999
Q ss_pred HHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----cEEEEEEcCccH-HHHhhcCEE
Q 003437 210 GIDIIH----------KPSLLFLDEPTSGLDSTSAYSVVEKVKDIA-----RTG----SIVLMTIHQPSY-RIQMLLDRI 269 (820)
Q Consensus 210 a~aL~~----------~P~lLllDEPtsgLD~~~~~~i~~~L~~l~-----~~g----~tvi~~~H~~~~-~i~~~~D~v 269 (820)
|++|+. +|++++|||||+|||+.++.++++.|+++. +.| .+|++++|+.+. .+.+++|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999985 322 678899998762 256667665
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.87 E-value=1.2e-23 Score=210.42 Aligned_cols=145 Identities=16% Similarity=0.133 Sum_probs=102.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPP 163 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~ 163 (820)
.++|+||||||||||+|+|+|++. |.++|.+.... ..++.+||++|+. ++.+++ + ..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~--- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF--- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETT---
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hhhc---
Confidence 589999999999999999999872 34555443211 2346689999975 222322 0 0000
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHH-----HhcCCCEEEEeC--CCCCCCHHHHHH
Q 003437 164 SISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGID-----IIHKPSLLFLDE--PTSGLDSTSAYS 236 (820)
Q Consensus 164 ~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~a-----L~~~P~lLllDE--PtsgLD~~~~~~ 236 (820)
.. -.+..+.++ ..||||||||++||++ |+.+|++|+||| ||++||+.....
T Consensus 64 -~~----------------~~~~~~~~~-----~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 64 -FT----------------SKKLVGSYG-----VNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp -CC----------------CSSEETTEE-----ECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred -CC----------------ccccccccc-----cCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 00 002233333 4699999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEEc---CccHHHHhhcCEEEEEeCCeEEE
Q 003437 237 VVEKVKDIARTGSIVLMTIH---QPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 237 i~~~L~~l~~~g~tvi~~~H---~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
+.+.|++ .+.|+|+++| +.. .+..++|+ .+|+++.
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~-~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHP-LVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSH-HHHHHHTC----TTCEEEE
T ss_pred HHHHHhc---CCCeEEEEEccCCCch-HHHHHHhc----CCcEEEE
Confidence 9888865 4777888886 544 57788887 5577765
No 72
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.87 E-value=8e-27 Score=251.81 Aligned_cols=166 Identities=17% Similarity=0.234 Sum_probs=129.1
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||++.|. ..+|+++|++|++|++++|+||||||||||+++|+|++ +|+|.
T Consensus 102 i~~~~vs~~y~-------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I~-------- 155 (305)
T 2v9p_A 102 FNYQNIELITF-------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSVL-------- 155 (305)
T ss_dssp HHHTTCCHHHH-------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEEE--------
T ss_pred EEEEEEEEEcC-------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceEE--------
Confidence 78888988873 24899999999999999999999999999999999987 48883
Q ss_pred ccccceEEEEccCCCCCCCCCHHH-HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 128 SYMKMVSSYVMQDDQLFPMLTVFE-TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 128 ~~~~~~~gyv~Q~~~l~~~lTV~e-~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
+|++|++.+++. |++| |+.+... .+. .+.+.++.+ |.+..+ | ..||||||||
T Consensus 156 -------~~v~q~~~lf~~-ti~~~ni~~~~~------~~~-----~~~~~i~~~-L~~gld---g----~~LSgGqkQR 208 (305)
T 2v9p_A 156 -------SFANHKSHFWLA-SLADTRAALVDD------ATH-----ACWRYFDTY-LRNALD---G----YPVSIDRKHK 208 (305)
T ss_dssp -------CGGGTTSGGGGG-GGTTCSCEEEEE------ECH-----HHHHHHHHT-TTGGGG---T----CCEECCCSSC
T ss_pred -------EEecCccccccc-cHHHHhhccCcc------ccH-----HHHHHHHHH-hHccCC---c----cCcCHHHHHH
Confidence 467888877765 7776 7765311 121 345556654 444444 2 4799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccch
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL 286 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 286 (820)
||+|+.+|+||| |++||+.+...+.. .+|+++. ...||+| +|++|++++.|+++++
T Consensus 209 ---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~~--~~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 209 ---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQT--FRFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp ---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEEE--EECCCCC-CCC---CCCCCCHHHH
T ss_pred ---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHHH--HHhCCEE-EEeCCEEEEeCCHHHH
Confidence 999999999999 99999999888862 1788763 5689999 9999999999999887
Q ss_pred hhhh
Q 003437 287 PAHL 290 (820)
Q Consensus 287 ~~~f 290 (820)
...+
T Consensus 265 ~~~y 268 (305)
T 2v9p_A 265 KSFF 268 (305)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 73
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.86 E-value=5.9e-26 Score=232.30 Aligned_cols=181 Identities=18% Similarity=0.112 Sum_probs=122.3
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
.++++| .++++||+++|+||||||||||+|+|+|+++ ...+.+.+.+.+... ..++.++|++|++.+++.+|+.+
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHTT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhcC
Confidence 458888 7999999999999999999999999999874 222322222221111 12455789999988888888887
Q ss_pred HHHHHHHhcC---CCCCCHHHHHHHHHHH------HHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEE
Q 003437 152 TFMFAAEVRL---PPSISRDEKKKRVYEL------LDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFL 222 (820)
Q Consensus 152 ~l~~~~~~~~---~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLll 222 (820)
++.+...... ..+.++++.++++++. ++.+|+.+.++.++. .|| +|+.+|++++|
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~lS-----------~l~~~p~~~~L 147 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE-----AVT-----------VFLAPPSWQDL 147 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTT-----SEE-----------EEEECSCHHHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCC-----cEE-----------EEEECCCHHHH
Confidence 7642211100 0123445555666665 556666555555443 577 89999999999
Q ss_pred eCCCCCC----CHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 223 DEPTSGL----DSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 223 DEPtsgL----D~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
||||+|| |+..+.++.++++++.+ .|.|+|+++||++ ++..+||+|++|..
T Consensus 148 Dep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 148 QARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTA 203 (207)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC---
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhcc
Confidence 9999998 78899999999999975 5899999999997 48889999999853
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.84 E-value=4.7e-23 Score=222.99 Aligned_cols=174 Identities=16% Similarity=0.182 Sum_probs=135.5
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc-------cc--cceEEEEccCCC-CC
Q 003437 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS-------YM--KMVSSYVMQDDQ-LF 144 (820)
Q Consensus 75 L~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~-------~~--~~~~gyv~Q~~~-l~ 144 (820)
++++|+++++|++++|+||||||||||++.|+|++.+ .+|+|.++|.++... .+ +..++|++|++. ++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 3578899999999999999999999999999999853 579999999887532 11 235899999988 88
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCC--EEEE
Q 003437 145 PMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPS--LLFL 222 (820)
Q Consensus 145 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~--lLll 222 (820)
|.+||+|++.++.... .. ..+++.+|+.+..+.++. +|| |||++||++|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHHHH-----HHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHHHH-----HHH---HHHHHHHHhhccCCCeeEEEE
Confidence 9999999998864211 10 135677888877777765 599 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCcc--------HHHHhhcCEEEEEeCCeE
Q 003437 223 DEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPS--------YRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 223 DEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~--------~~i~~~~D~v~lL~~G~i 277 (820)
| ||+|||+... ++++.+ .|.|+|++||... ..+....+.|.++..|+.
T Consensus 228 D-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 228 D-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp E-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred e-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9 9999999754 345554 5899999999432 124455678888888854
No 75
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.83 E-value=3.4e-23 Score=220.71 Aligned_cols=148 Identities=16% Similarity=0.183 Sum_probs=99.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSIS 166 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~ 166 (820)
.++|+||||||||||+|+|+|+.. +.+|+|.++|+++.....++.++|++|++.+++.+||.||+.|+...... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~--~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE--NC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT--TC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH--HH
Confidence 479999999999999999999875 45799999999886544567799999999999999999999887543211 11
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 003437 167 RDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR 246 (820)
Q Consensus 167 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~ 246 (820)
.+.+.+.++ .+..+...+ .||||||||++|||+++. ++++|||+.|||+.. .+.++.+.+
T Consensus 80 ----~~~i~~~~~----~~~~~~~~~-----~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 ----WEPIEKYIN----EQYEKFLKE-----EVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp ----SHHHHHHHH----HHHHHHHHH-----HSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred ----HHHHHHHHH----HHHHhhhHH-----hcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 122333332 233444443 599999999999999886 999999999999987 556666666
Q ss_pred CCcEEEEEEcCcc
Q 003437 247 TGSIVLMTIHQPS 259 (820)
Q Consensus 247 ~g~tvi~~~H~~~ 259 (820)
. .+||+++|..+
T Consensus 140 ~-~~vI~Vi~K~D 151 (270)
T 3sop_A 140 V-VNIIPVIAKAD 151 (270)
T ss_dssp T-SEEEEEETTGG
T ss_pred c-CcEEEEEeccc
Confidence 5 89999999864
No 76
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.83 E-value=1.5e-23 Score=237.68 Aligned_cols=193 Identities=16% Similarity=0.102 Sum_probs=152.2
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCE--
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK-- 123 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~-- 123 (820)
..++++|+++.|.. +..+|+++ +.+.+||+++|+||||||||||+++|+|+.. ++.|.|.++|+
T Consensus 130 ~~l~~~~v~~~~~t-----------g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~--~~~G~i~~~G~r~ 195 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT-----------GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR--ADVIVVGLIGERG 195 (438)
T ss_dssp CTTTSCCCCSBCCC-----------SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCH
T ss_pred CceEEeccceecCC-----------CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEeceec
Confidence 45888889888742 13599999 9999999999999999999999999999985 46899999998
Q ss_pred -eCCC--------ccccceEEEEccC-CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 003437 124 -PVTT--------SYMKMVSSYVMQD-DQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGN 193 (820)
Q Consensus 124 -~~~~--------~~~~~~~gyv~Q~-~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~ 193 (820)
++.. ...++.++||+|+ +.+++.+||.+|+.+.++.... ..+++ ....|.
T Consensus 196 ~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~-------~~~~v---------~~~ld~---- 255 (438)
T 2dpy_A 196 REVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRD-------RGQHV---------LLIMDS---- 255 (438)
T ss_dssp HHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT-------TTCEE---------EEEEEC----
T ss_pred HHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh-------CCCCH---------HHHHHh----
Confidence 4432 1245678999995 5567788999999887653210 00000 111121
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-Cc-----EEEEEEcCccHHHHh
Q 003437 194 EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR---T-GS-----IVLMTIHQPSYRIQM 264 (820)
Q Consensus 194 ~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~---~-g~-----tvi~~~H~~~~~i~~ 264 (820)
...+|+|| |||+|| +.+|++ |+|||+.....+.++|+++.+ + |. ||++++||++ ..
T Consensus 256 --l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~ 320 (438)
T 2dpy_A 256 --LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DP 320 (438)
T ss_dssp --HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CH
T ss_pred --HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---ch
Confidence 23599999 999999 889988 999999999999999999876 3 64 9999999997 35
Q ss_pred hcCEEEEEeCCeEEEEcCccchh
Q 003437 265 LLDRIIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 265 ~~D~v~lL~~G~iv~~G~~~~~~ 287 (820)
+||++++|.+|+++..|++.++.
T Consensus 321 iad~v~~l~dG~Ivl~~~~~~~~ 343 (438)
T 2dpy_A 321 IADSARAILDGHIVLSRRLAEAG 343 (438)
T ss_dssp HHHHHHHHSSEEEEECHHHHHTT
T ss_pred hhceEEEEeCcEEEEeCCHHHcc
Confidence 79999999999999999876653
No 77
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.82 E-value=6e-20 Score=202.87 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=75.9
Q ss_pred CCC-CCChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHh
Q 003437 195 GRR-GVSGGERRRVSIGIDII---------HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQM 264 (820)
Q Consensus 195 ~~~-~LSGGerqRv~ia~aL~---------~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~ 264 (820)
.++ .||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. +.
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~---- 332 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP---- 332 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT----
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc----
Confidence 345 69999999999999999 8999999999999999999999999998874 689999994 42
Q ss_pred hcCEEEEEeCCeEEEEcCccch
Q 003437 265 LLDRIIVLARGRLVYMGSPVAL 286 (820)
Q Consensus 265 ~~D~v~lL~~G~iv~~G~~~~~ 286 (820)
.+|++++|++|+++..|+++++
T Consensus 333 ~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp TCSEEEEEETTEEEECCCTTTS
T ss_pred cCCEEEEEECCEEEecCCHHHH
Confidence 7999999999999999998876
No 78
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.82 E-value=6.4e-22 Score=218.34 Aligned_cols=172 Identities=16% Similarity=0.190 Sum_probs=135.4
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc-------cc--cceEEEEccCCC-CCC
Q 003437 76 HDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS-------YM--KMVSSYVMQDDQ-LFP 145 (820)
Q Consensus 76 ~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~-------~~--~~~~gyv~Q~~~-l~~ 145 (820)
+++|+++++|++++|+||||||||||++.|+|++.+ .+|+|.++|.++... .+ +..++|++|++. ++|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 468889999999999999999999999999999853 479999999987532 11 345899999988 888
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCC--EEEEe
Q 003437 146 MLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPS--LLFLD 223 (820)
Q Consensus 146 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~--lLllD 223 (820)
.+||+|++.++.... .. ..+++.+|+.+..+.++. +|| |||++||++|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHHHH-----HHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhHHH-----HHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 899999998864311 10 135677888877777665 599 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCcc--------HHHHhhcCEEEEEeCCe
Q 003437 224 EPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPS--------YRIQMLLDRIIVLARGR 276 (820)
Q Consensus 224 EPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~--------~~i~~~~D~v~lL~~G~ 276 (820)
||+|||+.+. ++++.+ .|.|+|++||... ..+....+.|..+..|+
T Consensus 286 -pttglD~~~~------~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge 340 (359)
T 2og2_A 286 -GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 340 (359)
T ss_dssp -GGGGGGGHHH------HHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred -CCCCCCHHHH------HHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCC
Confidence 9999998765 345554 5899999999421 12344567788887775
No 79
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.81 E-value=2.1e-21 Score=212.83 Aligned_cols=131 Identities=17% Similarity=0.220 Sum_probs=106.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC-ccccceEEEEccCCCCCCCCCHHHH
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT-SYMKMVSSYVMQDDQLFPMLTVFET 152 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~-~~~~~~~gyv~Q~~~l~~~lTV~e~ 152 (820)
+++++|+.+++|++++|+||||||||||+|+|+|++++ .+|.|.++|.+... ...++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEe--------------
Confidence 78999999999999999999999999999999999854 58999999864211 11223334332
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 003437 153 FMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDST 232 (820)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~ 232 (820)
+ |||+||++||++|..+|++|++||||+
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~----- 251 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS----- 251 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-----
Confidence 1 799999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 233 SAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 233 ~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
.++.+.|+.+...+.|+|+++|+++ +...+||+++|.+|+
T Consensus 252 --~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 252 --SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp --THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred --HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 2466778777654568999999997 466799999998774
No 80
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.80 E-value=3.7e-19 Score=195.77 Aligned_cols=76 Identities=26% Similarity=0.390 Sum_probs=69.2
Q ss_pred CCCCChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEE
Q 003437 196 RRGVSGGERR------RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRI 269 (820)
Q Consensus 196 ~~~LSGGerq------Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 269 (820)
+..||||||| |+++|++|+.+|++|||||||+|||+..+..+++.|+++.++|.|||++||++. +...||++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~--~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH--HHHhCCEE
Confidence 4579999999 677888888899999999999999999999999999999878899999999964 57889999
Q ss_pred EEEe
Q 003437 270 IVLA 273 (820)
Q Consensus 270 ~lL~ 273 (820)
++|+
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
No 81
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.80 E-value=9.3e-21 Score=204.15 Aligned_cols=185 Identities=17% Similarity=0.156 Sum_probs=122.3
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCce-EEEECCEeCCCccccceEEEEccCCCCCCCCCHH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEG-SVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVF 150 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G-~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~ 150 (820)
..+|+++++.+++|++++|+||||||||||++.|+|...+ .+| .|.+.+.+.......+++.++.|+.. +++.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhc
Confidence 3589999999999999999999999999999999998743 346 67554443332222222233333321 1233
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH-HHHHHHHHHHhcCCCEEEEeCCCC--
Q 003437 151 ETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE-RRRVSIGIDIIHKPSLLFLDEPTS-- 227 (820)
Q Consensus 151 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe-rqRv~ia~aL~~~P~lLllDEPts-- 227 (820)
+++.... + +.++..+.++++++..++. ..+ .+..+|.+| +||+. |+++..+|++||+||||+
T Consensus 96 ~~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~------~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 96 DSLKREI-I------ENGKFDQWFDELFGNDTFH-LYD------SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp HHHHHHH-H------HHTHHHHHHHHHHSSSCEE-EEC------CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---
T ss_pred cccccCC-C------CHHHHHHHHHHHhccCCEE-EEC------CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccC
Confidence 3443321 1 1223334455555433331 111 123589999 66776 999999999999999999
Q ss_pred -C---CCH-HHHHHHHHHHHHHHhC-CcEEEEEEcCc--cH-------------------HHHhhcCEEEEEeCCeE
Q 003437 228 -G---LDS-TSAYSVVEKVKDIART-GSIVLMTIHQP--SY-------------------RIQMLLDRIIVLARGRL 277 (820)
Q Consensus 228 -g---LD~-~~~~~i~~~L~~l~~~-g~tvi~~~H~~--~~-------------------~i~~~~D~v~lL~~G~i 277 (820)
+ +|. ....++++.|++++++ |.|||+++|+. .. .+.++||+|++|++|+.
T Consensus 161 ~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 161 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 555 6778899999999865 99999999996 31 46778999999999874
No 82
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.80 E-value=5.8e-24 Score=219.62 Aligned_cols=152 Identities=16% Similarity=0.112 Sum_probs=101.5
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc----cccceEEEEccCCCCCCCCC
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS----YMKMVSSYVMQDDQLFPMLT 148 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~----~~~~~~gyv~Q~~~l~~~lT 148 (820)
.-|+||||++++|++++|+||||||||||+|+|+|+. + |+|.+ |.++... ..++.++|++|++.+|+.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 4799999999999999999999999999999999977 2 89999 7765321 12356789999876655432
Q ss_pred H-HHHHH---HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHH-----HHHHhcCCCE
Q 003437 149 V-FETFM---FAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSI-----GIDIIHKPSL 219 (820)
Q Consensus 149 V-~e~l~---~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~i-----a~aL~~~P~l 219 (820)
. .+++. +....+ +.+. +.++++++...+. .+. ..||||||||++| +++|+.+|++
T Consensus 85 ~~~~~l~~~~~~~~~~---g~~~----~~i~~~l~~~~~~-----il~----~~lsggq~qR~~i~~~~~~~~ll~~~~~ 148 (218)
T 1z6g_A 85 KNEDFLEYDNYANNFY---GTLK----SEYDKAKEQNKIC-----LFE----MNINGVKQLKKSTHIKNALYIFIKPPST 148 (218)
T ss_dssp HTTCEEEEEEETTEEE---EEEH----HHHHHHHHTTCEE-----EEE----ECHHHHHHHTTCSSCCSCEEEEEECSCH
T ss_pred hccchhhhhhcccccC---CCcH----HHHHHHHhCCCcE-----EEE----ecHHHHHHHHHHhcCCCcEEEEEeCcCH
Confidence 1 11111 101110 1121 3466666654321 111 2599999999999 8999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 003437 220 LFLDEPTSGLDSTSAYSVVEKVKDIAR 246 (820)
Q Consensus 220 LllDEPtsgLD~~~~~~i~~~L~~l~~ 246 (820)
++|||||+++|..+...+.+.|.++.+
T Consensus 149 ~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 149 DVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999988754
No 83
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.80 E-value=9e-24 Score=229.67 Aligned_cols=159 Identities=12% Similarity=0.109 Sum_probs=113.2
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcC
Q 003437 82 AIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRL 161 (820)
Q Consensus 82 i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~ 161 (820)
+++|++++|+||||||||||+++|+|++.+ ..|. +.++||+|++.+++. |++||+.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~--~~G~--------------~~v~~v~qd~~~~~~-t~~e~~~~~~~--- 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR--WDHH--------------PRVDLVTTDGFLYPN-AELQRRNLMHR--- 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT--STTC--------------CCEEEEEGGGGBCCH-HHHHHTTCTTC---
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc--cCCC--------------CeEEEEecCccCCcc-cHHHHHHHHHh---
Confidence 789999999999999999999999998854 2332 457999999999988 99999864321
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 003437 162 PPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKV 241 (820)
Q Consensus 162 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L 241 (820)
.+.+.....+.+.++|+.++ .+..+..+. .|||||+||+++|++++.+|+|||+|||+..+|+..
T Consensus 147 -~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~-----~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-------- 211 (312)
T 3aez_A 147 -KGFPESYNRRALMRFVTSVK-SGSDYACAP-----VYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-------- 211 (312)
T ss_dssp -TTSGGGBCHHHHHHHHHHHH-TTCSCEEEE-----EEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------
T ss_pred -cCCChHHHHHHHHHHHHHhC-CCcccCCcc-----cCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------
Confidence 11222233456788888888 554555554 699999999999999999999999999999998621
Q ss_pred HHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 242 KDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 242 ~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
..+.+.=-.+|++.|+.+.....+.+|.+.+.+|
T Consensus 212 ~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 212 LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhc
Confidence 1122211234555665554444445554444444
No 84
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.79 E-value=6.8e-20 Score=222.88 Aligned_cols=161 Identities=25% Similarity=0.359 Sum_probs=123.3
Q ss_pred HHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC-CC-H---HHHHHHHHHH
Q 003437 103 DALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPS-IS-R---DEKKKRVYEL 177 (820)
Q Consensus 103 ~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~-~~-~---~~~~~~v~~~ 177 (820)
.|..+++. +..|+|+++|+++.. +..+||.|++.|...+..... .. . ....++..+.
T Consensus 386 ~C~g~rl~--~~~~~V~i~G~~i~~----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 447 (916)
T 3pih_A 386 VCGGRRLN--REALSVKINGLNIHE----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEF 447 (916)
T ss_dssp TTCSCCBC--TTGGGEEETTEEHHH----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHH
T ss_pred hcccccCC--hHhcCcEECCccHHH----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHH
Confidence 34444443 457999999988742 223578888877544322111 00 0 0112334567
Q ss_pred HHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q 003437 178 LDQLGLRSA-THTYIGNEGRRGVSGGERRRVSIGIDIIHKPS--LLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMT 254 (820)
Q Consensus 178 l~~lgL~~~-~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~--lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~ 254 (820)
|..+||... .++.++ +|||||||||+||++|+++|+ +|||||||+|||+.....++++|++++++|.|||++
T Consensus 448 L~~vgL~~l~l~r~~~-----~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 448 LVDVGLEYLTLSRSAT-----TLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHTTTCTTCBTTSBGG-----GCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHcCCccccccCCcc-----cCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 888999764 566665 699999999999999999887 999999999999999999999999998889999999
Q ss_pred EcCccHHHHhhcCEEEEE------eCCeEEEEcCccchhh
Q 003437 255 IHQPSYRIQMLLDRIIVL------ARGRLVYMGSPVALPA 288 (820)
Q Consensus 255 ~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~~ 288 (820)
+||++. + ..||+|++| ++|++++.|+++++..
T Consensus 523 tHd~~~-~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 523 EHDEEV-I-RNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp CCCHHH-H-HTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred eCCHHH-H-HhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 999863 4 459999999 8999999999988764
No 85
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.78 E-value=2.9e-19 Score=207.56 Aligned_cols=77 Identities=22% Similarity=0.328 Sum_probs=71.0
Q ss_pred CCCC-ChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 196 RRGV-SGGERRRVSIGIDIIHKP--SLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 196 ~~~L-SGGerqRv~ia~aL~~~P--~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
+..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |.|||++||++.. ...||++++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~--~~~~d~~~~~ 470 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQI--AARAHHHYKV 470 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHH--HHHSSEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHH--HHhCCEEEEE
Confidence 4567 999999999999999999 99999999999999999999999999987 8999999999863 4579999999
Q ss_pred eCC
Q 003437 273 ARG 275 (820)
Q Consensus 273 ~~G 275 (820)
+++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 765
No 86
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.77 E-value=7.2e-21 Score=199.64 Aligned_cols=170 Identities=11% Similarity=0.110 Sum_probs=107.2
Q ss_pred cccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHH
Q 003437 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVF 150 (820)
Q Consensus 71 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~ 150 (820)
.+.+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|++ +++.+|+.
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCHh
Confidence 456999999999999999999999999999999999965 444443 2356789999985 77789999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 003437 151 ETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLD 230 (820)
Q Consensus 151 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD 230 (820)
|++.+....... ..+.....+.+.+.|+.+ .+..+..+. .||+||+||+.+ ++++.+|+++|+|||...+|
T Consensus 77 ~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~l--~~~~~~~~~-----~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~ 147 (245)
T 2jeo_A 77 QKAKALKGQYNF-DHPDAFDNDLMHRTLKNI--VEGKTVEVP-----TYDFVTHSRLPE-TTVVYPADVVLFEGILVFYS 147 (245)
T ss_dssp HHHHHHTTCCCT-TSGGGBCHHHHHHHHHHH--HTTCCEEEC-----CEETTTTEECSS-CEEECCCSEEEEECTTTTTS
T ss_pred HhhhhhccCCCC-CCcccccHHHHHHHHHHH--HCCCCeecc-----cccccccCccCc-eEEecCCCEEEEeCcccccc
Confidence 998775432110 001111123444555543 334444443 699999999988 57888999999999998888
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 231 STSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 231 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
.. +.++ .+.+|++++|+.......+++++ ++|+
T Consensus 148 ~~--------l~~~--~~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 148 QE--------IRDM--FHLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp HH--------HHTT--CSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred HH--------HHHh--cCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 64 2222 37899999997443233344444 5564
No 87
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.77 E-value=1.5e-18 Score=209.76 Aligned_cols=131 Identities=24% Similarity=0.440 Sum_probs=112.2
Q ss_pred CCCHHHHHHHHHHhcCCCCCCH----------HHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHh
Q 003437 146 MLTVFETFMFAAEVRLPPSISR----------DEKKKRVYELLDQLGLRSA-THTYIGNEGRRGVSGGERRRVSIGIDII 214 (820)
Q Consensus 146 ~lTV~e~l~~~~~~~~~~~~~~----------~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSGGerqRv~ia~aL~ 214 (820)
.+||.|++.|...+.+ +. ++..+++ +.|+.+||... .++.++ +|||||||||+||++|.
T Consensus 451 ~ltV~e~~~f~e~l~l----~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~-----tLSGGEkQRV~LA~aL~ 520 (972)
T 2r6f_A 451 AMSVTEALAFFDGLEL----TEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIG 520 (972)
T ss_dssp TSBHHHHHHHHHHCCC----CHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGG-----GCCHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccc-----cCCHHHHHHHHHHHHHh
Confidence 6899999999766543 33 2344555 45899999864 677765 69999999999999999
Q ss_pred cCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE------eCCeEEEEcCccch
Q 003437 215 HKP--SLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL------ARGRLVYMGSPVAL 286 (820)
Q Consensus 215 ~~P--~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~ 286 (820)
.+| ++|||||||+|||+.....+++.|++|.+.|.|||+++|+++. + ..||+|++| ++|++++.|+++++
T Consensus 521 ~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~-i-~~ADrIi~LgpgaG~~gG~iv~~G~~~e~ 598 (972)
T 2r6f_A 521 SRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT-M-LAADYLIDIGPGAGIHGGEVVAAGTPEEV 598 (972)
T ss_dssp TCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHH-H-HSCSEEEEECSSSGGGCCSEEEEECTTTT
T ss_pred hCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-HhCCEEEEeCCCccCCCCEEEEecCHHHH
Confidence 985 9999999999999999999999999998889999999999863 4 579999999 78999999999887
Q ss_pred hh
Q 003437 287 PA 288 (820)
Q Consensus 287 ~~ 288 (820)
..
T Consensus 599 ~~ 600 (972)
T 2r6f_A 599 MN 600 (972)
T ss_dssp TT
T ss_pred Hh
Confidence 54
No 88
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.77 E-value=6.1e-20 Score=226.83 Aligned_cols=173 Identities=20% Similarity=0.213 Sum_probs=120.8
Q ss_pred ceEEEEE-----EEEEECcccccccccccccccceeeeeEEEeC-------CcEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 003437 46 HGLEFKN-----LSYSIMKKQKKDGVWITKEAYLLHDISGQAIR-------GEIMAIMGPSGAGKSTFLDALAGRIAQGS 113 (820)
Q Consensus 46 ~~L~~~n-----ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~-------Ge~~allGpnGsGKSTLl~~L~G~~~~~~ 113 (820)
..|+++| |++.|.+ +..+++|+++.+.+ |++++|+||||||||||||+| |++..
T Consensus 749 ~~l~i~~~rHP~l~~~~~~-----------~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG-----------DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-- 814 (1022)
T ss_dssp CCEEEEEECCCC------C-----------CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--
T ss_pred ceEEEEeccccEEEEEecC-----------CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--
Confidence 3599999 9888732 13599999999987 999999999999999999999 97631
Q ss_pred CceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 003437 114 LEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGN 193 (820)
Q Consensus 114 ~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~ 193 (820)
..+..+||||+.. .+||.|++. ..+|+.+.....
T Consensus 815 ----------------~aqiG~~Vpq~~~---~l~v~d~I~------------------------~rig~~d~~~~~--- 848 (1022)
T 2o8b_B 815 ----------------MAQMGCYVPAEVC---RLTPIDRVF------------------------TRLGASDRIMSG--- 848 (1022)
T ss_dssp ----------------HHTTTCCEESSEE---EECCCSBEE------------------------EECC-----------
T ss_pred ----------------HhheeEEeccCcC---CCCHHHHHH------------------------HHcCCHHHHhhc---
Confidence 1222349999753 345555441 112222221111
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEE
Q 003437 194 EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSA-YSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIV 271 (820)
Q Consensus 194 ~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~-~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~l 271 (820)
...+|+++++ +++|++++++|+++||||||+|+|+... ..++.+|+.++++ |.++|++||+.+. +..++|++.+
T Consensus 849 --~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el-~~~~~d~~~v 924 (1022)
T 2o8b_B 849 --ESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSL-VEDYSQNVAV 924 (1022)
T ss_dssp ---CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHH-HHHTSSCSSE
T ss_pred --hhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHH-HHHhCCccee
Confidence 1347776664 9999999999999999999999999985 5578999999876 9999999999875 6678999888
Q ss_pred EeCCeEE--EEcCc
Q 003437 272 LARGRLV--YMGSP 283 (820)
Q Consensus 272 L~~G~iv--~~G~~ 283 (820)
+ +|++. +.|++
T Consensus 925 ~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 925 R-LGHMACMVENEC 937 (1022)
T ss_dssp E-EEEEEEC-----
T ss_pred e-cCeEEEEEecCc
Confidence 7 58877 44443
No 89
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.76 E-value=9.8e-21 Score=208.56 Aligned_cols=194 Identities=15% Similarity=0.185 Sum_probs=139.5
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..++.+++++.|.. +..+|+++ +.|.+||+++|+||||||||||+++|+|+.. ++.|.|.+.|++.
T Consensus 44 ~~i~~~~l~~~~~t-----------g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~--~~~g~i~~~G~~~ 109 (347)
T 2obl_A 44 DPLLRQVIDQPFIL-----------GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS--ADIIVLALIGERG 109 (347)
T ss_dssp CSTTCCCCCSEECC-----------SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCH
T ss_pred CCeeecccceecCC-----------CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC--CCEEEEEEecccH
Confidence 35888899988852 13599999 9999999999999999999999999999985 4579999998752
Q ss_pred CC----------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 003437 126 TT----------SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEG 195 (820)
Q Consensus 126 ~~----------~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~ 195 (820)
.. ..+++.+.+++|.+. +..+.+...... ..+.+.+...+ .+... .+ +.
T Consensus 110 ~ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~~------------~~~ae~~~~~~-~~vl~-~l--d~ 168 (347)
T 2obl_A 110 REVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFTA------------TTIAEYFRDQG-KNVLL-MM--DS 168 (347)
T ss_dssp HHHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHHH------------HHHHHHHHTTT-CEEEE-EE--ET
T ss_pred HHHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHHH------------HHHHHHHHhcc-ccHHH-HH--hh
Confidence 11 113345678887542 233332211100 00111111111 11110 00 12
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCc-----EEEEEEcCccHHHHhhcCE
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR--TGS-----IVLMTIHQPSYRIQMLLDR 268 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~--~g~-----tvi~~~H~~~~~i~~~~D~ 268 (820)
+..||+|| |||++| +.+|++ |+|||+....++.++++++.+ .|. ||++++||.+ ..+||+
T Consensus 169 ~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~ 235 (347)
T 2obl_A 169 VTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDE 235 (347)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHH
T ss_pred HHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---Chhhhh
Confidence 34699999 899999 688887 999999999999999999974 477 8999999987 357999
Q ss_pred EEEEeCCeEEEEcCccchh
Q 003437 269 IIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 269 v~lL~~G~iv~~G~~~~~~ 287 (820)
+++|.+|+++..|++.++.
T Consensus 236 v~~i~dG~Ivl~~~l~~~~ 254 (347)
T 2obl_A 236 VRSILDGHIVLTRELAEEN 254 (347)
T ss_dssp HHHHCSEEEEBCHHHHTTT
T ss_pred eEEeeCcEEEEeCCHHHcC
Confidence 9999999999999877653
No 90
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.76 E-value=7.4e-19 Score=204.44 Aligned_cols=155 Identities=15% Similarity=0.172 Sum_probs=119.4
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHH
Q 003437 79 SGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAE 158 (820)
Q Consensus 79 s~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~ 158 (820)
++.+.+|++++|+||||||||||+++++|...+ .|+ +.+.|++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHHH----
Confidence 558999999999999999999999999997643 242 12456677641 12222221
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH-----H
Q 003437 159 VRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDST-----S 233 (820)
Q Consensus 159 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~-----~ 233 (820)
+. +.+. ++ +...|+.+..+..+ ..|||||+||+.+|+++..+|++|++| ||+|||.. .
T Consensus 330 -~~--g~~~-------~~-~~~~g~~~~~~~~p-----~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 330 -SW--GMDF-------EE-MERQNLLKIVCAYP-----ESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp -TT--SCCH-------HH-HHHTTSEEECCCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred -Hc--CCCH-------HH-HHhCCCEEEEEecc-----ccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 11 1221 12 23456655555443 469999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHhCCcEEEEEEcCc----------cHHHHhhcCEEEEEeCCe
Q 003437 234 AYSVVEKVKDIARTGSIVLMTIHQP----------SYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 234 ~~~i~~~L~~l~~~g~tvi~~~H~~----------~~~i~~~~D~v~lL~~G~ 276 (820)
+..+.++++.+++.|.|||+++|+. . .+..+||+|++|++|+
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~-~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDS-HISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSS-CCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCc-ccceeeeEEEEEEEEE
Confidence 9999999999988899999999998 4 3667899999999887
No 91
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.75 E-value=1.1e-18 Score=210.57 Aligned_cols=180 Identities=18% Similarity=0.236 Sum_probs=129.3
Q ss_pred CCCCcHHHHHHHHHcCCCC-------CCCceEEEECCEeCCCc---cccceEEEEccCC---CCCC----CCCHHHHHHH
Q 003437 93 PSGAGKSTFLDALAGRIAQ-------GSLEGSVRIDGKPVTTS---YMKMVSSYVMQDD---QLFP----MLTVFETFMF 155 (820)
Q Consensus 93 pnGsGKSTLl~~L~G~~~~-------~~~~G~I~i~G~~~~~~---~~~~~~gyv~Q~~---~l~~----~lTV~e~l~~ 155 (820)
.+..||++|.+.+....=| .+..|+|.++|+++... ...+..+++.|.+ .... .++- ++...
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i 348 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAERVKNRP-EQAIA 348 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCSTTSSSSCS-SHHHH
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcccchhhcch-hhHHH
Confidence 4567899999988773211 23578899999887531 1122222332211 0000 0000 01111
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHH
Q 003437 156 AAEVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEGRRGVSGGERRRVSIGIDIIHKP--SLLFLDEPTSGLDST 232 (820)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P--~lLllDEPtsgLD~~ 232 (820)
+..+ .++..++++ .|..+||.+. .++.+. +|||||||||+||++|+.+| ++|||||||+|||+.
T Consensus 349 ~~~i-------~~ei~~rl~-~L~~vGL~~l~l~r~~~-----tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~ 415 (842)
T 2vf7_A 349 LQRM-------AADLVKRLD-VLLHLGLGYLGLDRSTP-----TLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPA 415 (842)
T ss_dssp HHHH-------HHHHHHHHH-HHHHTTCTTSBTTCBGG-----GSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGG
T ss_pred HHHH-------HHHHHHHHH-HHHhCCCCcCCccCCcC-----cCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHH
Confidence 1111 234556666 6889999865 677665 69999999999999999999 599999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE------eCCeEEEEcCccchhh
Q 003437 233 SAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL------ARGRLVYMGSPVALPA 288 (820)
Q Consensus 233 ~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~~ 288 (820)
....++++|++|.+.|.|||+++|+++ +...||+|++| ++|++++.|+++++..
T Consensus 416 ~~~~L~~~l~~L~~~G~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 416 DTEALLSALENLKRGGNSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp GHHHHHHHHHHHHTTTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 999999999999988999999999996 34679999999 7899999999988754
No 92
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.75 E-value=2.9e-19 Score=218.26 Aligned_cols=161 Identities=19% Similarity=0.247 Sum_probs=114.0
Q ss_pred cccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHH
Q 003437 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVF 150 (820)
Q Consensus 71 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~ 150 (820)
.+.+++|+++.+.+|++++|+||||||||||||+|++.... ...| +|||++...++.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~-aq~G------------------~~vpa~~~~~~~---- 704 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLM-AQIG------------------CFVPCESAEVSI---- 704 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHH-HHHT------------------CCBSEEEEEEEC----
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHH-HhcC------------------CccccccccchH----
Confidence 34699999999999999999999999999999999432100 0001 011111000000
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHH--hcCCCEEEEeCCCCC
Q 003437 151 ETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDI--IHKPSLLFLDEPTSG 228 (820)
Q Consensus 151 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL--~~~P~lLllDEPtsg 228 (820)
+++++..+|+.+. . .+++|+|+++++.+|++| +++|+++||||||+|
T Consensus 705 -----------------------~d~i~~~ig~~d~---l-----~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~G 753 (934)
T 3thx_A 705 -----------------------VDCILARVGAGDS---Q-----LKGVSTFMAEMLETASILRSATKDSLIIIDELGRG 753 (934)
T ss_dssp -----------------------CSEEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCS
T ss_pred -----------------------HHHHHHhcCchhh---H-----HHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCC
Confidence 0011112222211 1 135889988888888888 999999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchh
Q 003437 229 LDSTSAYSV-VEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 229 LD~~~~~~i-~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 287 (820)
||+.....+ ..+++.+++ .|.++|++||+.+ +..++|++..+.+|++...++.+++.
T Consensus 754 lD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e--l~~lad~~~~v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 754 TSTYDGFGLAWAISEYIATKIGAFCMFATHFHE--LTALANQIPTVNNLHVTALTTEETLT 812 (934)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG--GGGGGGTCTTEEEEEEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH--HHHHhcccceeEeeEEEEEecCCcEE
Confidence 999999888 677788876 4999999999975 56799999999999999988877654
No 93
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.74 E-value=3.9e-21 Score=223.68 Aligned_cols=169 Identities=16% Similarity=0.118 Sum_probs=119.2
Q ss_pred ccceeeeeE-EEeCCcEEEEEcCCCCcHHHHHHH--HHcCCCCCCCceEEEECCEeCCCc--cccceEEEEccCCCCCCC
Q 003437 72 AYLLHDISG-QAIRGEIMAIMGPSGAGKSTFLDA--LAGRIAQGSLEGSVRIDGKPVTTS--YMKMVSSYVMQDDQLFPM 146 (820)
Q Consensus 72 ~~iL~~vs~-~i~~Ge~~allGpnGsGKSTLl~~--L~G~~~~~~~~G~I~i~G~~~~~~--~~~~~~gyv~Q~~~l~~~ 146 (820)
..+|++|++ .+++||+++|+||||||||||+++ ++|+.++ .+|.|+++|++.... ...+.+||++|+....+.
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~--~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~ 102 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF--DEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGK 102 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTS
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCc
Confidence 469999999 999999999999999999999999 7898753 479999999874221 123456899987532111
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCC
Q 003437 147 LTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPT 226 (820)
Q Consensus 147 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPt 226 (820)
+.+ ..... . +...++++.++|.+..+..+. .|||| +|+++++||||
T Consensus 103 ------l~~---~~~~~--~-----~~~~~~l~~~~l~~~~~~~~~-----~LS~g-------------~~~~lilDe~t 148 (525)
T 1tf7_A 103 ------LFI---LDASP--D-----PEGQEVVGGFDLSALIERINY-----AIQKY-------------RARRVSIDSVT 148 (525)
T ss_dssp ------EEE---EECCC--C-----SSCCSCCSSHHHHHHHHHHHH-----HHHHH-------------TCSEEEEECST
T ss_pred ------EEE---EecCc--c-----cchhhhhcccCHHHHHHHHHH-----HHHHc-------------CCCEEEECCHH
Confidence 100 00000 0 001112233333333333322 35554 58899999999
Q ss_pred C-----CCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHH--------HHhhcCEEEEEeCCe
Q 003437 227 S-----GLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYR--------IQMLLDRIIVLARGR 276 (820)
Q Consensus 227 s-----gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~--------i~~~~D~v~lL~~G~ 276 (820)
+ +||+..+..+.++++.+++.|.|||+++|+++.. +..+||+|++|++|+
T Consensus 149 ~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 149 SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp TTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 8 4699999999999999988899999999999752 345699999999854
No 94
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.74 E-value=3e-18 Score=207.92 Aligned_cols=133 Identities=23% Similarity=0.343 Sum_probs=111.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCH----------HHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHH
Q 003437 144 FPMLTVFETFMFAAEVRLPPSISR----------DEKKKRVYELLDQLGLRSA-THTYIGNEGRRGVSGGERRRVSIGID 212 (820)
Q Consensus 144 ~~~lTV~e~l~~~~~~~~~~~~~~----------~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSGGerqRv~ia~a 212 (820)
+..+||.|.+.|...+. ++. ++..+++ +.|+.+||... .++.++ +|||||||||+||++
T Consensus 466 ~~~ltV~e~l~f~enl~----l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~-----tLSGGEkQRV~LA~a 535 (993)
T 2ygr_A 466 VCELSIADCADFLNALT----LGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAA-----TLSGGEAQRIRLATQ 535 (993)
T ss_dssp SSHHHHHHHHHTTTTTT----SCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGG-----GCCHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHhcC----CCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcc-----cCCHHHHHHHHHHHH
Confidence 44589999999954443 333 3344555 45888999864 676665 699999999999999
Q ss_pred HhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE------eCCeEEEEcCcc
Q 003437 213 IIHK--PSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL------ARGRLVYMGSPV 284 (820)
Q Consensus 213 L~~~--P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~ 284 (820)
|..+ |++|||||||+|||+.....+++.|++|.+.|.|||+++|+++. + ..||+|++| ++|++++.|+++
T Consensus 536 L~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~-i-~~ADrIi~Lgp~aG~~gG~iv~~G~~~ 613 (993)
T 2ygr_A 536 IGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDT-I-EHADWIVDIGPGAGEHGGRIVHSGPYD 613 (993)
T ss_dssp HTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-H-HTCSEEEEECSSSGGGCCSCCEEECHH
T ss_pred HhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHH-H-HhCCEEEEecCccccCCCEEEEeeCHH
Confidence 9999 58999999999999999999999999999899999999999863 4 579999999 689999999998
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 614 e~~~ 617 (993)
T 2ygr_A 614 ELLR 617 (993)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 8754
No 95
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.72 E-value=5.3e-19 Score=181.99 Aligned_cols=153 Identities=20% Similarity=0.196 Sum_probs=97.9
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-----CceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHH
Q 003437 80 GQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGS-----LEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFM 154 (820)
Q Consensus 80 ~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~-----~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~ 154 (820)
+-+++|++++|+||||||||||+++|+|...+.+ ..|.|++++.+... .+.+++++|+..+++. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcEE
Confidence 5799999999999999999999999999654322 23466666643211 1123344444333332 3333322
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH-HHHHHHHHHHhc-------CCCEEEEeCCC
Q 003437 155 FAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE-RRRVSIGIDIIH-------KPSLLFLDEPT 226 (820)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe-rqRv~ia~aL~~-------~P~lLllDEPt 226 (820)
+. ...++++ ++++..+.+++. +|+++++||||
T Consensus 96 ~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 96 VA----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp EE----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred EE----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 11 0123333 233455555554 89999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHh-CCcEEEEEEcCccH---HHHhhcCEEEEEeCCe
Q 003437 227 SGLDST-------S-----AYSVVEKVKDIAR-TGSIVLMTIHQPSY---RIQMLLDRIIVLARGR 276 (820)
Q Consensus 227 sgLD~~-------~-----~~~i~~~L~~l~~-~g~tvi~~~H~~~~---~i~~~~D~v~lL~~G~ 276 (820)
++||+. . ..++++.|+++++ .|.|||+++|.... .+...+|++++|++|+
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 999984 2 2378888888875 49999999994431 3677899999998753
No 96
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.72 E-value=3.9e-19 Score=185.33 Aligned_cols=169 Identities=13% Similarity=0.112 Sum_probs=106.7
Q ss_pred eeee-eEEEeCCcEEEEEcCCCCcHHHHHHHHH--cCCCCCCCceEEEECCEeCCCc--cccceEEEEccCCCCCCCCCH
Q 003437 75 LHDI-SGQAIRGEIMAIMGPSGAGKSTFLDALA--GRIAQGSLEGSVRIDGKPVTTS--YMKMVSSYVMQDDQLFPMLTV 149 (820)
Q Consensus 75 L~~v-s~~i~~Ge~~allGpnGsGKSTLl~~L~--G~~~~~~~~G~I~i~G~~~~~~--~~~~~~gyv~Q~~~l~~~lTV 149 (820)
|+++ .+.+++|++++|+||||||||||+++|+ |+..+ .+|.+.+++...... ...+.++|++|+....+.+++
T Consensus 19 lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 96 (251)
T 2ehv_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAI 96 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEE
T ss_pred HHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEE
Confidence 4443 2479999999999999999999999999 65222 347777776543211 112334666665444444444
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 003437 150 FETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGL 229 (820)
Q Consensus 150 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgL 229 (820)
.+++...... ........ . ...+.++..+......-..+|+++++||||++|
T Consensus 97 ~~~~~~~~~~----------~~~~~~~~-------------~-----~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~l 148 (251)
T 2ehv_A 97 VDGVSSVVGL----------PSEEKFVL-------------E-----DRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIA 148 (251)
T ss_dssp EC-----------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHH
T ss_pred EEcccccccc----------ccccceec-------------c-----CcccHHHHHHHHHHHHHhhCCCEEEEccHHHHH
Confidence 4432211100 00000000 0 113345555544555556899999999999999
Q ss_pred C-----HHHHHHHHHHHHHHHhCCcEEEEEEcCccHHH---------Hhhc-CEEEEEeC
Q 003437 230 D-----STSAYSVVEKVKDIARTGSIVLMTIHQPSYRI---------QMLL-DRIIVLAR 274 (820)
Q Consensus 230 D-----~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i---------~~~~-D~v~lL~~ 274 (820)
| +..+..+.++++.+++.|+|||+++|+... + ..+| |++++|++
T Consensus 149 d~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~-~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 149 LRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDP-QHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCC-CcccccccChhhEeeeEEEEEee
Confidence 8 677777999999998889999999999875 4 5788 99999963
No 97
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.71 E-value=2.8e-17 Score=159.15 Aligned_cols=80 Identities=25% Similarity=0.364 Sum_probs=72.2
Q ss_pred CCCCCChHHHHHHHHH------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCE
Q 003437 195 GRRGVSGGERRRVSIG------IDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDR 268 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia------~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 268 (820)
.+..||||||||++|| ++|+.+|++|||||||+|||+.++..+.+.|+++.++|.|||++||++. +..+||+
T Consensus 54 ~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~--~~~~~d~ 131 (148)
T 1f2t_B 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADH 131 (148)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSE
T ss_pred ChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH--HHHhCCE
Confidence 3567999999999876 8999999999999999999999999999999999877999999999984 5689999
Q ss_pred EEEE--eCCe
Q 003437 269 IIVL--ARGR 276 (820)
Q Consensus 269 v~lL--~~G~ 276 (820)
+++| .+|.
T Consensus 132 ii~l~~~~g~ 141 (148)
T 1f2t_B 132 VIRISLENGS 141 (148)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEcCCCe
Confidence 9999 4564
No 98
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.70 E-value=2.2e-18 Score=182.65 Aligned_cols=133 Identities=20% Similarity=0.317 Sum_probs=98.9
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHH
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFET 152 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~ 152 (820)
.+|+++| +++|++++|+||||||||||+++|+|++.+. .+|+|.++|.++... .+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~-~~G~I~~~g~~i~~~-~~~~~~~v~q~------------ 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIEYV-FKHKKSIVNQR------------ 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH-CCCEEEEEESSCCSC-CCCSSSEEEEE------------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC-CCCEEEEcCCcceee-cCCcceeeeHH------------
Confidence 3899999 8999999999999999999999999987431 279999998765321 11111122220
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 003437 153 FMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDST 232 (820)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~ 232 (820)
.+|++. ..+ |++||++|..+|++|++|||| |+.
T Consensus 79 ---------------------------~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 79 ---------------------------EVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp ---------------------------EBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred ---------------------------HhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 233321 123 899999999999999999999 998
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 233 SAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 233 ~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
+...++ +. ++.|.+|++++|+.+ +...+||++.|..
T Consensus 112 ~~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 112 TVETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 866544 33 356999999999987 4578999888753
No 99
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.69 E-value=1.6e-18 Score=211.21 Aligned_cols=145 Identities=19% Similarity=0.230 Sum_probs=100.5
Q ss_pred cccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHH
Q 003437 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVF 150 (820)
Q Consensus 71 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~ 150 (820)
++.|++|||+.+++|++++|+||||||||||||+|++..... ..| ..+... . +.+..-+.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-q~g------~~vpa~--~---~~i~~~d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-QIG------SYVPAE--E---ATIGIVDGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-HHT------CCBSSS--E---EEEECCSEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-hcC------ccccch--h---hhhhHHHHHHHhCChH
Confidence 356999999999999999999999999999999998753110 001 001000 0 1111111122222222
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 003437 151 ETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLD 230 (820)
Q Consensus 151 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD 230 (820)
+ ..... ...+|+||+|++.|+++ +.+|+++||||||+|||
T Consensus 727 d----------------------------------~l~~~-----~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 D----------------------------------NIYKG-----RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred H----------------------------------HHHHh-----HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 1 11111 13599999999999998 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-CCcEEEEEEcCccHHHHhhcCEE
Q 003437 231 STSAYSVV-EKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRI 269 (820)
Q Consensus 231 ~~~~~~i~-~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v 269 (820)
+.....+. .+++.+++ .|.|+|++||+++ +.+++|+.
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~ 805 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhc
Confidence 99999998 77888875 5999999999976 44667653
No 100
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.68 E-value=2.2e-19 Score=194.34 Aligned_cols=164 Identities=17% Similarity=0.188 Sum_probs=86.8
Q ss_pred EEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC-CCCCCCceEEEECCEeCCCcc
Q 003437 51 KNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR-IAQGSLEGSVRIDGKPVTTSY 129 (820)
Q Consensus 51 ~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~-~~~~~~~G~I~i~G~~~~~~~ 129 (820)
+||+++|++ +.+++++++.| +|+||||+|||||+++|.|. .. +.+| |.++|.++....
T Consensus 2 ~~l~~~~~~------------~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~ 60 (301)
T 2qnr_A 2 SNLPNQVHR------------KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTV 60 (301)
T ss_dssp ----------------------------CEEE------EEEEETTSSHHHHHHHHHC-----------------------
T ss_pred CCCcceECC------------EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcc
Confidence 467777743 35999999998 99999999999999999997 43 4568 888887765322
Q ss_pred ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHH
Q 003437 130 MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSI 209 (820)
Q Consensus 130 ~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~i 209 (820)
..+.++|++|++.+...+||.|+..++.... ..+.....++.+. +..+.++ +++|||||||+.+
T Consensus 61 ~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~-----~~e~~~~l~~~l~------~~~~~~~-----~~~sgg~rqrv~~ 124 (301)
T 2qnr_A 61 QIEASTVEIEERGVKLRLTVVDTPGYGDAIN-----CRDCFKTIISYID------EQFERYL-----HDESGLNRRHIID 124 (301)
T ss_dssp ----CEEEEC---CCEEEEEEEEC----------------CTTHHHHHH------HHHHHHH-----HHHTSSCCTTCCC
T ss_pred eEeeEEEEecCCCcccCcchhhhhhhhhhcC-----cHHHHHHHHHHHH------HHHHHHH-----HHhCHHhhhhhhh
Confidence 2345689999888888889999887754321 0001111122211 2233444 3699999999999
Q ss_pred HHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCcc
Q 003437 210 GIDIIHKPSLLFLDEPTS-GLDSTSAYSVVEKVKDIART-GSIVLMTIHQPS 259 (820)
Q Consensus 210 a~aL~~~P~lLllDEPts-gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~ 259 (820)
||+++ +|++||||+ |||+... +.++++.++ +.++|++.||..
T Consensus 125 ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 125 NRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred hhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 88875 999999998 4999873 566666553 789999999974
No 101
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.68 E-value=6.9e-20 Score=186.99 Aligned_cols=146 Identities=15% Similarity=0.096 Sum_probs=114.8
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCC--CCCCHHHHHHHHHHh
Q 003437 82 AIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLF--PMLTVFETFMFAAEV 159 (820)
Q Consensus 82 i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~--~~lTV~e~l~~~~~~ 159 (820)
.++|++++|+||||||||||+++|+|++.+ .++|++|++.++ +.+|+.+++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNYD- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT-
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCCC-
Confidence 468999999999999999999999997621 468999998776 56799888655321
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH----HHHHHHHHHHhcCCCEEEEeCCCCC-------
Q 003437 160 RLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE----RRRVSIGIDIIHKPSLLFLDEPTSG------- 228 (820)
Q Consensus 160 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe----rqRv~ia~aL~~~P~lLllDEPtsg------- 228 (820)
.+.....+++.++++.+++.+..+..+ ..+|+|| +||++++++++.+|.++++||||++
T Consensus 61 -----~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 61 -----HPDAFDLALYLEHAQALLRGLPVEMPV-----YDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp -----SGGGBCHHHHHHHHHHHHTTCCEEECC-----EETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred -----ChhhhhHHHHHHHHHHHHcCCCcCCCc-----ccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 111112345777888888877665543 3599996 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCcEEEEEEcCcc
Q 003437 229 LDSTSAYSVVEKVKDI-ARTGSIVLMTIHQPS 259 (820)
Q Consensus 229 LD~~~~~~i~~~L~~l-~~~g~tvi~~~H~~~ 259 (820)
||+....++.+.+++. .++|.|++.++|+..
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999886 456999999999753
No 102
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.67 E-value=7.2e-18 Score=202.58 Aligned_cols=146 Identities=22% Similarity=0.230 Sum_probs=106.3
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
+.+++|+|++ |++++|+||||||||||||+|+|+... +..|.+. .. .+..+++++| +++.+++.|
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~v------pa--~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSFV------PA--EEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCCB------SS--SEEEECCCSE---EEEECCC--
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCcee------eh--hccceeeHHH---hhccCCHHH
Confidence 5699999999 999999999999999999999997521 1245432 11 1344677766 555566655
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHH--hcCCCEEEEeCC---C
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDI--IHKPSLLFLDEP---T 226 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL--~~~P~lLllDEP---t 226 (820)
++. .++|+|+++++.+++++ +++|+++||||| |
T Consensus 631 ~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGT 668 (765)
T 1ewq_A 631 DLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGT 668 (765)
T ss_dssp ----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTS
T ss_pred HHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCC
Confidence 431 14899999999999999 999999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 227 SGLDSTSA-YSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 227 sgLD~~~~-~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
++||..+. ..+++.|++ .|.++|++||+.+ ...++ .-.+.++++....
T Consensus 669 s~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~--l~~~~--~~~v~n~~~~~~~ 717 (765)
T 1ewq_A 669 SSLDGVAIATAVAEALHE---RRAYTLFATHYFE--LTALG--LPRLKNLHVAARE 717 (765)
T ss_dssp CHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH--HHTCC--CTTEEEEEEEEEC
T ss_pred CCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH--HHHhh--hhcceEEEEEEEE
Confidence 99999875 578888766 5899999999975 34454 2223445554443
No 103
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.67 E-value=1.6e-16 Score=180.38 Aligned_cols=74 Identities=15% Similarity=0.225 Sum_probs=68.0
Q ss_pred CCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 198 GVSGGERRRVSIGIDII----HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~----~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
.||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.+++.++|++||++. ....||+++.|.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~--~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT--MFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH--HHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHH--HHHhCCEEEEEE
Confidence 49999999999999999 589999999999999999999999999998766889999999964 567899999986
No 104
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.67 E-value=3e-18 Score=185.50 Aligned_cols=149 Identities=13% Similarity=0.179 Sum_probs=109.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCcc---------ccceEEEEccCCCCCCCCCHHHHHH
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSY---------MKMVSSYVMQDDQLFPMLTVFETFM 154 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~---------~~~~~gyv~Q~~~l~~~lTV~e~l~ 154 (820)
+|++++|+||||||||||+++|+|++.+ .+|+|.++|.++.... .+..++|++|+..++|.+||.|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 6999999999999999999999999854 5799999999875311 1245799999999899899999998
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 003437 155 FAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSA 234 (820)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~ 234 (820)
++.... . -..+++..|+.+..+.. ++..++||++|||+|+.+|+.++| .||+.+.
T Consensus 179 ~~~~~~----~--------d~~llDt~G~~~~~~~~--------~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKARG----Y--------DLLFVDTAGRLHTKHNL--------MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHHHT----C--------SEEEECCCCCCTTCHHH--------HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHhCC----C--------CEEEecCCCCCCchHHH--------HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 653211 0 00123344544333222 455569999999999999994444 4555555
Q ss_pred HHHHHHHHHHHhC-CcEEEEEEcCcc
Q 003437 235 YSVVEKVKDIART-GSIVLMTIHQPS 259 (820)
Q Consensus 235 ~~i~~~L~~l~~~-g~tvi~~~H~~~ 259 (820)
.++++.++++.+. |.|+|++||+..
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 6677778887754 999999999854
No 105
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.66 E-value=1.1e-18 Score=205.94 Aligned_cols=195 Identities=16% Similarity=0.142 Sum_probs=120.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeee----------eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCce
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDI----------SGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEG 116 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~v----------s~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G 116 (820)
.++++||++.|..+. +++|+.+ ++.++. ++|+|||||||||||++|+|+..| ..+|
T Consensus 10 ~i~~~~l~~~~~~~~----------r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG 75 (608)
T 3szr_A 10 SVAENNLCSQYEEKV----------RPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALP-RGSG 75 (608)
T ss_dssp ----------CHHHH----------HHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------
T ss_pred hhhhhhhhHHHHHHH----------HHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCC-CCCC
Confidence 488999999986432 1233222 344443 999999999999999999998744 2589
Q ss_pred EEEECCEeCCC------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 003437 117 SVRIDGKPVTT------SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTY 190 (820)
Q Consensus 117 ~I~i~G~~~~~------~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 190 (820)
.|+++|.++.. ..+++.++|++|+..+++.+||+|++.++....... ..++..
T Consensus 76 ~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~----------------~~~~s~----- 134 (608)
T 3szr_A 76 IVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGE----------------GMGISH----- 134 (608)
T ss_dssp -CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCS----------------SSCCCS-----
T ss_pred eEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCC----------------ccccch-----
Confidence 99999998521 235667899999999999999999998764321000 001111
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHh--CCcEEEEEEcCccH--
Q 003437 191 IGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEP------TSGLDSTSAYSVVEKVKDIAR--TGSIVLMTIHQPSY-- 260 (820)
Q Consensus 191 ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEP------tsgLD~~~~~~i~~~L~~l~~--~g~tvi~~~H~~~~-- 260 (820)
+++.++.+....|+++|+||| |+|||+....++.++++++.+ .+.++++++|+.+.
T Consensus 135 --------------~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~ 200 (608)
T 3szr_A 135 --------------ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIAT 200 (608)
T ss_dssp --------------CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTT
T ss_pred --------------HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhcc
Confidence 112222233458999999999 999999999999999999754 37788999998762
Q ss_pred ----HHHhh-----cCEEEEEeCCeEEEEcCccchhhhh
Q 003437 261 ----RIQML-----LDRIIVLARGRLVYMGSPVALPAHL 290 (820)
Q Consensus 261 ----~i~~~-----~D~v~lL~~G~iv~~G~~~~~~~~f 290 (820)
.+.+. ...|.++.++.++..|+.+++...+
T Consensus 201 ~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l 239 (608)
T 3szr_A 201 TEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVV 239 (608)
T ss_dssp CHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC
T ss_pred HHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHHH
Confidence 12222 2458888888888778766555443
No 106
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.64 E-value=4.7e-18 Score=187.60 Aligned_cols=166 Identities=20% Similarity=0.186 Sum_probs=106.6
Q ss_pred ceeee-eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCc----eE-EEECCEeCCCccccceEEEEccCCCCCCCC
Q 003437 74 LLHDI-SGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE----GS-VRIDGKPVTTSYMKMVSSYVMQDDQLFPML 147 (820)
Q Consensus 74 iL~~v-s~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~----G~-I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~l 147 (820)
.|+++ ++.+++|++++|+||||||||||++.|++.....+.+ |+ |++++.+.. .++.+++++|+..+++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-
Confidence 56665 6899999999999999999999999999986322233 67 888886541 13345667776554433
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHh-------cCCCEE
Q 003437 148 TVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDII-------HKPSLL 220 (820)
Q Consensus 148 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~-------~~P~lL 220 (820)
++.||+.+... . -|.+++|++.++++++ .+|++|
T Consensus 195 ~v~~ni~~~~~------~---------------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 195 EVLKHIYVARA------F---------------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp HHGGGEEEEEC------C---------------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred HHhhCEEEEec------C---------------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 44444332110 0 1345566666666666 789999
Q ss_pred EEeCCCCCCCHHH------------HHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 221 FLDEPTSGLDSTS------------AYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 221 llDEPtsgLD~~~------------~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
++||||++||+.. ..++++.|+++++ .|.|||+++|.... ....++....+..|+++.++..
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~-~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQAR-PDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTCS
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccc-cccccCCccccCCcceEeecCc
Confidence 9999999999852 4667777788776 48999999998753 4444556666677777666553
No 107
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.64 E-value=3.1e-17 Score=198.21 Aligned_cols=156 Identities=15% Similarity=0.168 Sum_probs=109.8
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
+.+++|+++. ++|++++|+||||||||||||+|+|+.... ..| ..+... +..+++++| +++.+++.|
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~-q~G------~~vpa~--~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA-YIG------SYVPAQ--KVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH-TTT------CCBSSS--EEEECCCCE---EEEEEC---
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH-hcC------cccchh--cccceeHHH---HHhhCCHHH
Confidence 4699999999 999999999999999999999999974211 112 112111 123455554 555566665
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDS 231 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~ 231 (820)
++... + ..+|++++ +++.+..++++|+++|||||++|+|+
T Consensus 662 ~l~~~--------------------------~-------------stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG--------------------------R-------------STFMVEMT-ETANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh--------------------------h-------------hhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCCh
Confidence 54221 0 13566665 45555567999999999999999999
Q ss_pred HHHHHH-HHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 232 TSAYSV-VEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 232 ~~~~~i-~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
.....+ ..+++.+.+ .|.++|++||+.+. ..++|++..+.+|++.+...
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el--~~l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYFEL--TQLPEKMEGVANVHLDALEH 752 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCGGG--GGHHHHSTTEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCHHH--HHHhhhhhceEEEEEEEEEc
Confidence 887776 788888887 49999999999863 56899887888888876543
No 108
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.61 E-value=1.9e-15 Score=161.25 Aligned_cols=151 Identities=18% Similarity=0.184 Sum_probs=105.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhc
Q 003437 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVR 160 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~ 160 (820)
-+.+|++++|+||||||||||++.|++... .|++. .|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~~-~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPDL-LEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCCT-TCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCCc-CCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 478999999999999999999999998653 36553 3544321 2356787665421 01111111 111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC--CCCHHH---HH
Q 003437 161 LPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTS--GLDSTS---AY 235 (820)
Q Consensus 161 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPts--gLD~~~---~~ 235 (820)
. .... ..++++++.+++.+..+..+ ..||+||+|++ ++++.+|+++++||||+ ++|... ..
T Consensus 92 ~--~~~~----~~~~~~~~~l~l~~~~~~~~-----~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 A--HLSA----EERQAVADGLLIQPLIGSLP-----NIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp T--TSCH----HHHHHHHHHEEECCCTTSCC-----CTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred h--hcCh----hhhhhccCceEEeecCCCCc-----ccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 1 1222 23566788888877655544 46999998876 68889999999999999 999744 48
Q ss_pred HHHHHHHHHHh-CCcEEEEEEcCcc
Q 003437 236 SVVEKVKDIAR-TGSIVLMTIHQPS 259 (820)
Q Consensus 236 ~i~~~L~~l~~-~g~tvi~~~H~~~ 259 (820)
++++.|+++++ .|.|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 88999999974 5999999999975
No 109
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.60 E-value=4.7e-18 Score=171.49 Aligned_cols=157 Identities=13% Similarity=0.108 Sum_probs=103.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPP 163 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~ 163 (820)
|++++|+||||||||||+++|+|++. .+| |.++|...... ..++.+||++|+. ... ++++ +++.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~--- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVG--- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hccc---
Confidence 78999999999999999999999874 469 99999877432 3467789999975 111 1111 0000
Q ss_pred CCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChHHHHHH-HHHH---HHhcCCCEEEEeC--CCCCCCHHHHHH
Q 003437 164 SISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGRRGVSGGERRRV-SIGI---DIIHKPSLLFLDE--PTSGLDSTSAYS 236 (820)
Q Consensus 164 ~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSGGerqRv-~ia~---aL~~~P~lLllDE--PtsgLD~~~~~~ 236 (820)
++.++ ..+..++. +...+|+|||+++ ++++ |++.+|++||+|| |+..+|....
T Consensus 66 -----------------~~~~~~~~~~~v~~-~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~-- 125 (189)
T 2i3b_A 66 -----------------LEPPPGKRECRVGQ-YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFI-- 125 (189)
T ss_dssp -----------------CCCCSSSCCEESSS-SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHH--
T ss_pred -----------------ccCCccccccccce-EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHH--
Confidence 01111 01113332 2235999999988 4444 5789999999999 8989998754
Q ss_pred HHHHHHHHHhCCcEEEE----EEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 237 VVEKVKDIARTGSIVLM----TIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 237 i~~~L~~l~~~g~tvi~----~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
+.|+++.+...++|+ ++|+.+ ..+.|+|..+.+|+++.-.
T Consensus 126 --~~l~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 126 --QAVRQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp --HHHHHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred --HHHHHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 444555444555553 238764 2356777777888888643
No 110
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.60 E-value=7.4e-16 Score=158.27 Aligned_cols=169 Identities=12% Similarity=0.073 Sum_probs=109.9
Q ss_pred ccceeeeeE-EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccc---eEEEEccCCCCCCCC
Q 003437 72 AYLLHDISG-QAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKM---VSSYVMQDDQLFPML 147 (820)
Q Consensus 72 ~~iL~~vs~-~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~---~~gyv~Q~~~l~~~l 147 (820)
...|+++.+ .+++|++++|+||||||||||++.|++...+ ..|.|.+.+.+.......+ ..++.+|+.... .+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 85 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KL 85 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CE
Confidence 347888885 8999999999999999999999999987532 2466655443322110000 011111110000 00
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCC--EEEEeCC
Q 003437 148 TVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPS--LLFLDEP 225 (820)
Q Consensus 148 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~--lLllDEP 225 (820)
.+ ++.....++ ...+ ....|.++.++...+.....+|+ +|++|||
T Consensus 86 ~~------------------------~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~ 132 (235)
T 2w0m_A 86 II------------------------IDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSV 132 (235)
T ss_dssp EE------------------------EECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETG
T ss_pred EE------------------------EeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECc
Confidence 00 000000000 0011 12359999998888888888999 9999999
Q ss_pred CCCC--CHHHHHHHHHHHHHHHh-CCcEEEEEEcCcc-------HHHHhhcCEEEEEeCCe
Q 003437 226 TSGL--DSTSAYSVVEKVKDIAR-TGSIVLMTIHQPS-------YRIQMLLDRIIVLARGR 276 (820)
Q Consensus 226 tsgL--D~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~-------~~i~~~~D~v~lL~~G~ 276 (820)
|+++ |+....++++.|+++++ .|.|||+++|+.. ..+..+||++++|++.+
T Consensus 133 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 133 SALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp GGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred hHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 9888 99999999999999975 5999999999982 23778899999998653
No 111
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.58 E-value=1.5e-17 Score=168.64 Aligned_cols=179 Identities=13% Similarity=0.090 Sum_probs=98.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC---CCCCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIA---QGSLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~---~~~~~G~I~i~G~ 123 (820)
.|+++||++.|.. .+|++ +.+.+|+.++|+|+||||||||+|.|+|... ..++.|.+.+.+.
T Consensus 3 ~l~~~~~~~~~~~-------------~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~ 67 (210)
T 1pui_A 3 NLNYQQTHFVMSA-------------PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 67 (210)
T ss_dssp --------CEEEE-------------SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE
T ss_pred chhhhhhhheeec-------------CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE
Confidence 3889999999842 36777 7889999999999999999999999999761 0234566543221
Q ss_pred e-CC-CccccceEEEEccCCCCCCCCC---HHHHHHHHHHh-cC----------CCCCCHHHHHHHHHHHHHHcCCCcc-
Q 003437 124 P-VT-TSYMKMVSSYVMQDDQLFPMLT---VFETFMFAAEV-RL----------PPSISRDEKKKRVYELLDQLGLRSA- 186 (820)
Q Consensus 124 ~-~~-~~~~~~~~gyv~Q~~~l~~~lT---V~e~l~~~~~~-~~----------~~~~~~~~~~~~v~~~l~~lgL~~~- 186 (820)
- +. ........|+..++ .+.-. .+..+...... +. ....+. ..+.+.++++..++...
T Consensus 68 ~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~ 142 (210)
T 1pui_A 68 FEVADGKRLVDLPGYGYAE---VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVLV 142 (210)
T ss_dssp EEEETTEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEEE
T ss_pred EEecCCEEEEECcCCcccc---cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeEE
Confidence 0 00 00000000111000 00000 11122111110 00 001121 22345566777777643
Q ss_pred ccccccCCCCCCCChHHHHH-HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcE
Q 003437 187 THTYIGNEGRRGVSGGERRR-VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSI 250 (820)
Q Consensus 187 ~~~~ig~~~~~~LSGGerqR-v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~t 250 (820)
..+++. .+|+||||| +..+++++.+|+++++|||||++|.....++++.|.++..+|.|
T Consensus 143 v~nK~D-----~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 143 LLTKAD-----KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp EEECGG-----GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred EEeccc-----CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 244443 589999999 89999999999999999999999999999999999998766544
No 112
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.58 E-value=6.4e-17 Score=182.04 Aligned_cols=164 Identities=16% Similarity=0.170 Sum_probs=97.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|.++||+++|.+ +.+++|+||+| +|+|+||||||||+++|+|...+.+..|.+.+++.+
T Consensus 11 ~l~~~~l~~~y~~------------~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~-- 70 (418)
T 2qag_C 11 YVGFANLPNQVYR------------KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK-- 70 (418)
T ss_dssp ----CCCCCCTTT------------TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-------
T ss_pred cEEEEecceeECC------------EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc--
Confidence 4899999988753 35899999998 999999999999999999987532222322222211
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
....+.++|++|++.+++.+||.||+.+..... ..+....+.+.++. .++.+++||
T Consensus 71 -t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~~-----------------~~~~~l~qr 126 (418)
T 2qag_C 71 -TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYIDS-----------------KFEDYLNAE 126 (418)
T ss_dssp -CCEEEEEECC------CEEEEEEECC-----------------CHHHHHHHHH-----------------HHHHHTTTS
T ss_pred -ceeeeeEEEEEecCCcccceeeeechhhhhhcc------chhhHHHHHHHHHH-----------------HHHHHHHHH
Confidence 112345789999988888899999987764321 11111112111211 266677889
Q ss_pred HHHHHHHhcCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCcc
Q 003437 207 VSIGIDIIHKPS---LLFLDEPT-SGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259 (820)
Q Consensus 207 v~ia~aL~~~P~---lLllDEPt-sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 259 (820)
++||++++.+|+ +|++|||| .|||+... ++++.+.. +.+||+++|..+
T Consensus 127 ~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 127 SRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp CC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEESTT
T ss_pred HHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEccc
Confidence 999999999999 99999999 69998773 44455543 788888888754
No 113
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.58 E-value=3.4e-16 Score=172.88 Aligned_cols=128 Identities=20% Similarity=0.278 Sum_probs=89.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhc
Q 003437 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVR 160 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~ 160 (820)
...+|++++|+|||||||||||++|+|++.+. ..|.|...+.++.. ..+...+++.|.......++
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~~~~------------ 184 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIEF-VHESKKCLVNQREVHRDTLG------------ 184 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCCS-CCCCSSSEEEEEEBTTTBSC------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHHh-hhhccccceeeeeeccccCC------------
Confidence 67889999999999999999999999987432 24666554433321 12222345555432211111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q 003437 161 LPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK 240 (820)
Q Consensus 161 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~ 240 (820)
-.+ +||++|..+|++|++|||| |..+ ++.
T Consensus 185 ----------------------------------------~~~----~La~aL~~~PdvillDEp~---d~e~----~~~ 213 (356)
T 3jvv_A 185 ----------------------------------------FSE----ALRSALREDPDIILVGEMR---DLET----IRL 213 (356)
T ss_dssp ----------------------------------------HHH----HHHHHTTSCCSEEEESCCC---SHHH----HHH
T ss_pred ----------------------------------------HHH----HHHHHhhhCcCEEecCCCC---CHHH----HHH
Confidence 111 8999999999999999999 6555 444
Q ss_pred HHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 241 VKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 241 L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
+.+++..|.+||+++|+.+. + ..+||++.|..|
T Consensus 214 ~~~~~~~G~~vl~t~H~~~~-~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 214 ALTAAETGHLVFGTLHTTSA-A-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHHTTCEEEEEESCSSH-H-HHHHHHHHTSCH
T ss_pred HHHHHhcCCEEEEEEccChH-H-HHHHHHhhhcCc
Confidence 45556779999999999984 4 779999888554
No 114
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.54 E-value=1.4e-16 Score=164.36 Aligned_cols=149 Identities=19% Similarity=0.257 Sum_probs=99.7
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCH----HHHHH
Q 003437 79 SGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTV----FETFM 154 (820)
Q Consensus 79 s~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV----~e~l~ 154 (820)
.-..++|++++|+||||||||||+|+|+|+.++....|.|.+.+++.... .++.++|++|++..|+.+++ .|++.
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 44678999999999999999999999999885323689999988765432 24457899997655444333 12111
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 003437 155 FAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSA 234 (820)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~ 234 (820)
+.. ... +.| +++ +..++..++++||| ||+.++
T Consensus 89 ~~~-------------------------------~~y------g~~---~~~---v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 89 VFG-------------------------------NYY------GTS---REA---IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp ETT-------------------------------EEE------EEE---HHH---HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HHh-------------------------------ccC------CCC---HHH---HHHHHhcCCeEEEE-----ECHHHH
Confidence 100 001 111 222 34455668999999 999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchhhhh
Q 003437 235 YSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHL 290 (820)
Q Consensus 235 ~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f 290 (820)
.++.+.+. ++.||++++|+++. +.+ |+ +.+| .++++++...+
T Consensus 121 ~~i~~~l~----~~~tI~i~th~~~~-l~~---Rl--~~rG----~~~~e~i~~rl 162 (219)
T 1s96_A 121 QQIRQKMP----HARSIFILPPSKIE-LDR---RL--RGRG----QDSEEVIAKRM 162 (219)
T ss_dssp HHHHHHCT----TCEEEEEECSSHHH-HHH---HH--HTTS----CSCHHHHHHHH
T ss_pred HHHHHHcc----CCEEEEEECCCHHH-HHH---HH--HHcC----CCCHHHHHHHH
Confidence 99999876 58999999999874 433 32 6677 56666665554
No 115
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.50 E-value=1.1e-18 Score=174.96 Aligned_cols=172 Identities=17% Similarity=0.206 Sum_probs=112.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPS 164 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 164 (820)
|++++|+||||||||||+++|++. .+|++.++|.++... ...++++|.....+.+++.+++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999982 358999998765321 224667776544445678888776543210000
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC--ChHHHHHHHHHH------HHhcCCCEEEEeCCCCCCCHHHHHH
Q 003437 165 ISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV--SGGERRRVSIGI------DIIHKPSLLFLDEPTSGLDSTSAYS 236 (820)
Q Consensus 165 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~L--SGGerqRv~ia~------aL~~~P~lLllDEPtsgLD~~~~~~ 236 (820)
...+++.+. .......+ +.+ |+|++|++.++. +++.+|+...+|+ +||+.....
T Consensus 74 ---------~~~ild~~~-~~~~~~~~-----~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~ 135 (189)
T 2bdt_A 74 ---------NDVVLDYIA-FPDEAEAL-----AQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL 135 (189)
T ss_dssp ---------CEEEEESCC-CHHHHHHH-----HHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH
T ss_pred ---------CcEEEeecc-CHHHHHHH-----HHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH
Confidence 000111110 00000000 124 888888888888 8999999888884 899988888
Q ss_pred HHHHHHHHHhCCcEEEEEEcC-ccHHHHhhcCEEEEEeCCeEEEEcCccch
Q 003437 237 VVEKVKDIARTGSIVLMTIHQ-PSYRIQMLLDRIIVLARGRLVYMGSPVAL 286 (820)
Q Consensus 237 i~~~L~~l~~~g~tvi~~~H~-~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 286 (820)
.+.++.+.+.+.++|.++|+ ++. +.++||+|+ ++|+++..|+++-+
T Consensus 136 -~~~~~~~~~~~~~ii~tsh~~~~~-~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 136 -VEEFESKGIDERYFYNTSHLQPTN-LNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp -HHHHHHTTCCTTSEEECSSSCGGG-HHHHHHHHH--HCGGGSCC------
T ss_pred -HHHHhhcCCCccEEEeCCCCChhh-HHHHHHHHh--hCCcEEEeecCCch
Confidence 88888886668899999998 764 788999998 99999999987644
No 116
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.50 E-value=2.9e-14 Score=145.46 Aligned_cols=154 Identities=18% Similarity=0.145 Sum_probs=100.6
Q ss_pred cceeeee-EEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 73 YLLHDIS-GQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 73 ~iL~~vs-~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
+.|+++. +-+++|++++|+||||||||||++.|++ ..+ .+.+ |+..+.. .+..
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~--~~v~-----------------~i~~~~~----~~~~- 60 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSG--KKVA-----------------YVDTEGG----FSPE- 60 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHC--SEEE-----------------EEESSCC----CCHH-
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcC--CcEE-----------------EEECCCC----CCHH-
Confidence 3677776 4799999999999999999999999998 211 1222 3322221 1111
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH--HHHHHHHHHHhcC-CCEEEEeCCCCC
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE--RRRVSIGIDIIHK-PSLLFLDEPTSG 228 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe--rqRv~ia~aL~~~-P~lLllDEPtsg 228 (820)
.+.-... . ..... +++++.+. +. .+|+++ +++++.+++++.+ |+++++||||+.
T Consensus 61 ~~~~~~~-~--~~~~~-------~~~~~~~~--------~~-----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 61 RLVQMAE-T--RGLNP-------EEALSRFI--------LF-----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHH-T--TTCCH-------HHHHHHEE--------EE-----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHH-h--cCCCh-------HHHhhcEE--------EE-----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 1111001 0 01111 11222221 21 245554 5788888999986 999999999999
Q ss_pred CCHH--------HHHHHHHHHHHHHhC-CcEEEEEEcCccH------------HHHhhcCEEEEEeCC
Q 003437 229 LDST--------SAYSVVEKVKDIART-GSIVLMTIHQPSY------------RIQMLLDRIIVLARG 275 (820)
Q Consensus 229 LD~~--------~~~~i~~~L~~l~~~-g~tvi~~~H~~~~------------~i~~~~D~v~lL~~G 275 (820)
+|+. ...++++.|++++++ |.|||+++|.... .+...||.+++|++.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 118 YRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9973 335567778888764 8999999998651 367789999999764
No 117
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.49 E-value=5.3e-14 Score=139.67 Aligned_cols=78 Identities=19% Similarity=0.306 Sum_probs=67.1
Q ss_pred CCCCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEE
Q 003437 196 RRGVSGGERRRVSIGIDIIH----KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIV 271 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~----~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 271 (820)
+..||||||||++||++|+. +|+++||||||+|||+.+...+.+.|+++.+ +.++|+++|+.. +...||+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~--~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDV--MMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHH--HHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHH--HHHhCCEEEE
Confidence 34799999999999999974 4699999999999999999999999999865 468999999964 5678999986
Q ss_pred Ee--CCe
Q 003437 272 LA--RGR 276 (820)
Q Consensus 272 L~--~G~ 276 (820)
+. +|.
T Consensus 139 v~~~~g~ 145 (173)
T 3kta_B 139 VSMRDGV 145 (173)
T ss_dssp EEEETTE
T ss_pred EEecCCE
Confidence 64 553
No 118
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.48 E-value=1.7e-15 Score=169.89 Aligned_cols=164 Identities=15% Similarity=0.195 Sum_probs=111.9
Q ss_pred eeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC---CccccceEEEEccCCCCCCCCCH
Q 003437 75 LHDISGQAIRGEI--MAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT---TSYMKMVSSYVMQDDQLFPMLTV 149 (820)
Q Consensus 75 L~~vs~~i~~Ge~--~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~---~~~~~~~~gyv~Q~~~l~~~lTV 149 (820)
|+++|+++++|++ ++|+||||||||||+|+|+|+.. +|.++. ....++.++|++|++.+++.+||
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----------~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv 99 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----------EGEPATHTQPGVQLQSNTYDLQESNVRLKLTI 99 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-----------------CCSSCEEEEEEEEEEC--CEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----------cCCcCCCCCccceEeeEEEEeecCccccccch
Confidence 9999999999999 99999999999999999999742 222221 11224568999999988888999
Q ss_pred HHHHHHHHHhcCCCCCCHH--------HHHHHHHHHHHHc-CCCc----ccccc----cc--CCCCCCCChHHHHHHHHH
Q 003437 150 FETFMFAAEVRLPPSISRD--------EKKKRVYELLDQL-GLRS----ATHTY----IG--NEGRRGVSGGERRRVSIG 210 (820)
Q Consensus 150 ~e~l~~~~~~~~~~~~~~~--------~~~~~v~~~l~~l-gL~~----~~~~~----ig--~~~~~~LSGGerqRv~ia 210 (820)
.||+.|+.. .... ...+..++.|... ++.. ..|+. +. .+...+|+-.+ +.|+
T Consensus 100 ~D~~~~g~~------~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieil 170 (427)
T 2qag_B 100 VSTVGFGDQ------INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTM 170 (427)
T ss_dssp EEEECCCC-------CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHH
T ss_pred hhhhhhhhc------cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHH
Confidence 999876532 1111 1234455566654 5432 12222 10 11123577666 7899
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCcEEEEEEcC
Q 003437 211 IDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKD-IARTGSIVLMTIHQ 257 (820)
Q Consensus 211 ~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~-l~~~g~tvi~~~H~ 257 (820)
++|..+++++++|||+..|.+.....+.+.+++ +...|..|+.++.+
T Consensus 171 k~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 171 KKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 999999999999999999999999999999987 77789999888764
No 119
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.45 E-value=2.1e-16 Score=158.20 Aligned_cols=140 Identities=15% Similarity=0.051 Sum_probs=91.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhc
Q 003437 82 AIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVR 160 (820)
Q Consensus 82 i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~ 160 (820)
+++|++++|+||||||||||+++|+|.. ..|.|.++|.++... ..++.++|++|+.. +.+||.|++.+.+...
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~----~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLP----GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRY 79 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCS----SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhcc----CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHH
Confidence 6789999999999999999999999962 369999999765321 11234567777543 3568889887654321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccc--cccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q 003437 161 LPPSISRDEKKKRVYELLDQLGLRSAT--HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVV 238 (820)
Q Consensus 161 ~~~~~~~~~~~~~v~~~l~~lgL~~~~--~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~ 238 (820)
...+. ...++.+++.+++.... +.. +..+|+|++||+.++|++..+|+++ +|+.....+.
T Consensus 80 ~~~~~-----~~~~~~~~~~~~l~~~~~~~~~-----~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~ 141 (191)
T 1zp6_A 80 AKEGY-----FVILDGVVRPDWLPAFTALARP-----LHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLH 141 (191)
T ss_dssp HHTSC-----EEEECSCCCTTTTHHHHTTCSC-----EEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHH
T ss_pred hccCC-----eEEEeccCcHHHHHHHHhcCCC-----eEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHH
Confidence 00000 00011111111222111 111 2359999999999999999999876 6888777777
Q ss_pred HHHHHHH
Q 003437 239 EKVKDIA 245 (820)
Q Consensus 239 ~~L~~l~ 245 (820)
+.++.+.
T Consensus 142 ~~~~~l~ 148 (191)
T 1zp6_A 142 SQFADLG 148 (191)
T ss_dssp HHTTCCG
T ss_pred HHHhccC
Confidence 7766553
No 120
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.42 E-value=6.2e-17 Score=179.72 Aligned_cols=176 Identities=12% Similarity=0.021 Sum_probs=105.5
Q ss_pred ceeeeeEEEeC--CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCc----eEEEEC----CEeCCCccccceEEEEccCCCC
Q 003437 74 LLHDISGQAIR--GEIMAIMGPSGAGKSTFLDALAGRIAQGSLE----GSVRID----GKPVTTSYMKMVSSYVMQDDQL 143 (820)
Q Consensus 74 iL~~vs~~i~~--Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~----G~I~i~----G~~~~~~~~~~~~gyv~Q~~~l 143 (820)
+.+.|++.+.+ |+.++|+||||||||||+|+|+|++.+ .+ |+|.++ |.++ .
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~--~~~~e~G~i~i~~~~~~~~~-----------------~ 217 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT--TSAWEYGREFVFEKLGGDEQ-----------------A 217 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC--EEECCTTHHHHHHSSSSCTT-----------------S
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC--CcchhhHHHHHHhhcCCCcc-----------------c
Confidence 46789999999 999999999999999999999999853 45 666553 2211 0
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHh-cCCCEEEE
Q 003437 144 FPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDII-HKPSLLFL 222 (820)
Q Consensus 144 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~-~~P~lLll 222 (820)
++.... +++.+...- .......+.+-+..++ .+..++.+ ..+|+|++||..+++++. .+|+++||
T Consensus 218 ~~~~~~-~~I~~~~q~-------~~~~~~t~~~nl~~~~-~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~lllL 283 (365)
T 1lw7_A 218 MQYSDY-PQMALGHQR-------YIDYAVRHSHKIAFID-TDFITTQA-----FCIQYEGKAHPFLDSMIKEYPFDVTIL 283 (365)
T ss_dssp SCTTTH-HHHHHHHHH-------HHHHHHHHCSSEEEES-SCHHHHHH-----HHHHHHSCCCHHHHHHHHHSCCSEEEE
T ss_pred CChhHH-HHHHHHHHH-------HHHHHHhccCCEEEEe-CCchHHHH-----HHHHHcCCCCHHHHHHHhhcCCCEEEE
Confidence 111122 233332110 0000000000000001 11111111 236677788888888774 69999999
Q ss_pred eC---CC------CCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccch
Q 003437 223 DE---PT------SGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL 286 (820)
Q Consensus 223 DE---Pt------sgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 286 (820)
|| |+ .++|...+..+.+.|+++.+ .|.+||+++|. + ...+++|++.+|++ ++..++++++
T Consensus 284 dE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~~--~l~~~~~~~~ 353 (365)
T 1lw7_A 284 LKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIEK--VLNEEEISEL 353 (365)
T ss_dssp EECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHHH--HTSCCCCSSC
T ss_pred CCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHHH--HhcccchhHh
Confidence 99 65 58999999999999999865 48899999975 3 35667777766654 3334444443
No 121
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.42 E-value=4.9e-17 Score=177.26 Aligned_cols=163 Identities=13% Similarity=0.089 Sum_probs=107.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC------CCCceEEEECCEeCCCc------------------cccceEEEE---c
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRIAQ------GSLEGSVRIDGKPVTTS------------------YMKMVSSYV---M 138 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~~~------~~~~G~I~i~G~~~~~~------------------~~~~~~gyv---~ 138 (820)
++++|+|+||||||||||.|.|.... .++.|+|.+||.++... .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 68999999999999999999997521 24679999999887532 112334566 5
Q ss_pred cCCCCCCCCCHHHHHHHHH--Hh-cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhc
Q 003437 139 QDDQLFPMLTVFETFMFAA--EV-RLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIH 215 (820)
Q Consensus 139 Q~~~l~~~lTV~e~l~~~~--~~-~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~ 215 (820)
|+..+++..+|.|++.++. .+ +.-...+......+++.++..+++.+..+... ++|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEE
Confidence 7666666677777765431 00 00000000001112223344556655555543 499999999998888989
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcC
Q 003437 216 KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLD 267 (820)
Q Consensus 216 ~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 267 (820)
+|+++ ||| .++.+.|++++ .+.+|++++|++.. +..++|
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~-~~~l~~ 197 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDID-LGLLFN 197 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCCC-GGGGSC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCCC-HHHHhC
Confidence 99987 998 78888888875 58999999998653 444443
No 122
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.41 E-value=2e-14 Score=159.85 Aligned_cols=131 Identities=21% Similarity=0.332 Sum_probs=97.0
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHH
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETF 153 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l 153 (820)
+|++++ +++|++++|+||||||||||+++|+|++.+. .+|+|.+.|.++.. ..+..++||+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~e~-~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIEY-VFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSCCS-CCCCSSSEEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccHhh-hhccCceEEEeee------------
Confidence 566666 7899999999999999999999999987431 16999877766542 2345567888741
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 003437 154 MFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTS 233 (820)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~ 233 (820)
+|++. ..+ +.+|+++|..+|++|++|||+ |..+
T Consensus 191 ---------------------------~g~~~-----------~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 ---------------------------VGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp ---------------------------BTTTB-----------SCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ---------------------------cCCCH-----------HHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 22211 124 569999999999999999999 7766
Q ss_pred HHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 234 AYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 234 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
... .++. +..|.+|+.++|+.+ +...+||++.|.
T Consensus 224 ~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 224 VET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 443 3443 356899999999976 567788887663
No 123
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.41 E-value=3e-14 Score=157.88 Aligned_cols=137 Identities=13% Similarity=0.152 Sum_probs=100.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC-CCccccceEEEEc-cCCCCCCCCCHHH
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV-TTSYMKMVSSYVM-QDDQLFPMLTVFE 151 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~-~~~~~~~~~gyv~-Q~~~l~~~lTV~e 151 (820)
+++++|+.+++|++++|+||||||||||+|+|+|++++ .+|.|+++|..- .....++.++|++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 34999999999999999999999999999999998854 589999998532 1122456788988 54421
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDS 231 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~ 231 (820)
+++++..+|..|+.++..+|+.+++||+..
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 011222356677777778899999999986
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 232 TSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 232 ~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.++.+.|+.+.....|++.++|..+ ....+||+..|..|
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQ 302 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhc
Confidence 3456677777655568899999976 46678998888765
No 124
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.41 E-value=2.9e-16 Score=164.44 Aligned_cols=148 Identities=19% Similarity=0.255 Sum_probs=100.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH---cCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhc
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALA---GRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVR 160 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~---G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~ 160 (820)
++++++|+||||||||||+++|+ |+.. +..|+|.++|.+... .....+.+++|+..+++..++.+++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999999999 9764 457898887765322 12233455678878888889999998754210
Q ss_pred CC-----CCCCHHHHHHHHHHHHH--HcC------------CCccccccccCCCCCCCChHHHHHHHHHHHH-hcCCCEE
Q 003437 161 LP-----PSISRDEKKKRVYELLD--QLG------------LRSATHTYIGNEGRRGVSGGERRRVSIGIDI-IHKPSLL 220 (820)
Q Consensus 161 ~~-----~~~~~~~~~~~v~~~l~--~lg------------L~~~~~~~ig~~~~~~LSGGerqRv~ia~aL-~~~P~lL 220 (820)
.. .+.+... ..++.+.+ .++ +....++.+ ..||| |+ ++| +.+|+++
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~-----~~lSg----rv---~al~~~~P~~l 168 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWI-----HPPSG----RV---YNLDFNPPHVH 168 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEE-----ETTTT----EE---EETTTSCCSST
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCC-----cCCCC----Cc---cccccCCCccc
Confidence 00 0111111 12222221 122 222223333 36999 66 677 9999999
Q ss_pred EEe----CCCCCCCHHHHHHHHHHHHHHHhCC
Q 003437 221 FLD----EPTSGLDSTSAYSVVEKVKDIARTG 248 (820)
Q Consensus 221 llD----EPtsgLD~~~~~~i~~~L~~l~~~g 248 (820)
+|| |||++||..+...+.+.|+++.+++
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 999 9999999999999999999987653
No 125
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.39 E-value=1.7e-13 Score=150.68 Aligned_cols=123 Identities=20% Similarity=0.157 Sum_probs=89.1
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEEC-CEeCCCccccceEEEEccCCCCCCCCCHHHH
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRID-GKPVTTSYMKMVSSYVMQDDQLFPMLTVFET 152 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~-G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~ 152 (820)
-+++++.. .+|++++|+||||||||||+|+|+|... .+.+|+|.++ |..... ..+..+++++|+..++++.+|+|+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~-~~~~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQN-EILTNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSS-CCCCC--------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccc-ccccCCccccCCCCccc-eEEEEEEEECCCCEecCcccHHHh
Confidence 35666654 4899999999999999999999999874 1457999987 765432 234568999999989988899884
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHH
Q 003437 153 FMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDI 213 (820)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL 213 (820)
. + ..+++++..+.+.++++.+|+.+..+.... ++| ||+||++||+++
T Consensus 282 ---~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~-----~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 ---G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCKHD-----ADP-GCAIREAVENGA 328 (358)
T ss_dssp ---C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCSS-----SCT-TCHHHHHHHHTS
T ss_pred ---h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCCcc-----cCC-HHHHHHHHHhcC
Confidence 1 1 135666777788999999999888777764 699 999999999864
No 126
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.38 E-value=5.6e-13 Score=138.03 Aligned_cols=158 Identities=18% Similarity=0.225 Sum_probs=89.0
Q ss_pred ceeeee-EEEeCCcEEEEEcCCCCcHHHHHHHHHcC--CCCC---CCceEEEECCEeCCCccccceEEEEccCCCCCCCC
Q 003437 74 LLHDIS-GQAIRGEIMAIMGPSGAGKSTFLDALAGR--IAQG---SLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPML 147 (820)
Q Consensus 74 iL~~vs-~~i~~Ge~~allGpnGsGKSTLl~~L~G~--~~~~---~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~l 147 (820)
.|+.+- +-+++|++++|+||||||||||++.|++. ..+. ...|.+++++.+..
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~--------------------- 70 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF--------------------- 70 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC---------------------
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc---------------------
Confidence 344443 57899999999999999999999999994 3210 13456666554310
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH-HHHHHHHh--cCCCEEEEeC
Q 003437 148 TVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR-VSIGIDII--HKPSLLFLDE 224 (820)
Q Consensus 148 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR-v~ia~aL~--~~P~lLllDE 224 (820)
...+.......+ +...+ ++++.+. +. ...+..+... +.-+.+++ .+|+++++||
T Consensus 71 ~~~~~~~~~~~~----g~~~~-------~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~ 127 (243)
T 1n0w_A 71 RPERLLAVAERY----GLSGS-------DVLDNVA--------YA----RAFNTDHQTQLLYQASAMMVESRYALLIVDS 127 (243)
T ss_dssp CHHHHHHHHHHT----TCCHH-------HHHHTEE--------EE----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEET
T ss_pred CHHHHHHHHHHc----CCCHH-------HHhhCeE--------EE----ecCCHHHHHHHHHHHHHHHhcCCceEEEEeC
Confidence 111100010011 11111 1122111 10 1245554332 23333343 5899999999
Q ss_pred CCCCCCHH-------H-----HHHHHHHHHHHHhC-CcEEEEEEcCccHH------------------HHhhcCEEEEEe
Q 003437 225 PTSGLDST-------S-----AYSVVEKVKDIART-GSIVLMTIHQPSYR------------------IQMLLDRIIVLA 273 (820)
Q Consensus 225 PtsgLD~~-------~-----~~~i~~~L~~l~~~-g~tvi~~~H~~~~~------------------i~~~~D~v~lL~ 273 (820)
|++.+|+. . ..+++..|++++++ |.|||+++|..... +..+||.+++|+
T Consensus 128 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~ 207 (243)
T 1n0w_A 128 ATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLR 207 (243)
T ss_dssp SSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEE
T ss_pred chHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEE
Confidence 99999985 3 45667777777654 99999999965421 222789999998
Q ss_pred CC
Q 003437 274 RG 275 (820)
Q Consensus 274 ~G 275 (820)
+|
T Consensus 208 ~~ 209 (243)
T 1n0w_A 208 KG 209 (243)
T ss_dssp EC
T ss_pred Ec
Confidence 65
No 127
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.36 E-value=2e-12 Score=143.77 Aligned_cols=76 Identities=25% Similarity=0.369 Sum_probs=67.3
Q ss_pred CCCCChHHHHHH------HHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCE
Q 003437 196 RRGVSGGERRRV------SIGIDIIHK-PSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDR 268 (820)
Q Consensus 196 ~~~LSGGerqRv------~ia~aL~~~-P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 268 (820)
+..||||||||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++.+ +.+||++||++. +..+||+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~~--~~~~~d~ 354 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHRE--LEDVADV 354 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCGG--GGGGCSE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChHH--HHhhCCE
Confidence 457999999988 567888999 999999999999999999999999999743 568999999985 5688999
Q ss_pred EEEEeC
Q 003437 269 IIVLAR 274 (820)
Q Consensus 269 v~lL~~ 274 (820)
+++|++
T Consensus 355 ~~~l~k 360 (371)
T 3auy_A 355 IINVKK 360 (371)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999973
No 128
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.35 E-value=5.1e-15 Score=146.81 Aligned_cols=139 Identities=17% Similarity=0.207 Sum_probs=89.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCceEEEECCEeCCC------cccc-ceEE----EEccCCCCCCCCCHHHHH
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRIAQG-SLEGSVRIDGKPVTT------SYMK-MVSS----YVMQDDQLFPMLTVFETF 153 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~~~~-~~~G~I~i~G~~~~~------~~~~-~~~g----yv~Q~~~l~~~lTV~e~l 153 (820)
++++|+|+||||||||+++|+|++.+. ...|.|.++|.++.. ..++ +.+| +++|+..++ +.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 589999999999999999999997542 126999999987432 1233 3455 788877654 110
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHH-cCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEE-------EEeCC
Q 003437 154 MFAAEVRLPPSISRDEKKKRVYELLDQ-LGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLL-------FLDEP 225 (820)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lL-------llDEP 225 (820)
... +....++++++. +. ..|+.+++ +||||||||++|||+++.+|++. .-|.|
T Consensus 77 -----------~~~-~~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 -----------VSE-EEGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp -----------CCH-HHHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred -----------CCh-hhhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 011 111245556665 43 46888886 59999999999999999999763 33555
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCCc
Q 003437 226 TSG---LDSTSAYSVVEKVKDIARTGS 249 (820)
Q Consensus 226 tsg---LD~~~~~~i~~~L~~l~~~g~ 249 (820)
..+ +|......+.+.+.+...+|.
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred cccCcccCcccHHHHHHHHHHHHhccC
Confidence 322 345556788888877666654
No 129
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.35 E-value=3e-14 Score=139.40 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=65.9
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
+.+++++|+++++|++++|+||||||||||+|+|+|++ + .+|+|.++|.++....... .|++|+..++ .+||.|
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCTT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccccc-cCCcHH
Confidence 45899999999999999999999999999999999988 4 5799999998874322111 2799998888 899999
Q ss_pred HHHH
Q 003437 152 TFMF 155 (820)
Q Consensus 152 ~l~~ 155 (820)
++.+
T Consensus 94 ~l~~ 97 (158)
T 1htw_A 94 ELEF 97 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9965
No 130
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.34 E-value=3.6e-14 Score=161.12 Aligned_cols=154 Identities=14% Similarity=0.160 Sum_probs=106.4
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc-------c--ccceEEEEccCCCCCC
Q 003437 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS-------Y--MKMVSSYVMQDDQLFP 145 (820)
Q Consensus 75 L~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~-------~--~~~~~gyv~Q~~~l~~ 145 (820)
-+++|+++++|++++|+|+||||||||+++|+|++.+ .+|+|.++|.+.... . .++.++|++|+..+++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 4689999999999999999999999999999998753 479999988776431 1 2456899999988888
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHh-cCC-CEEEEe
Q 003437 146 MLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDII-HKP-SLLFLD 223 (820)
Q Consensus 146 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~-~~P-~lLllD 223 (820)
.+||++++.++..-. .+ .+ +++..|+.+.... +-.--+|++.+++++. ..| .+||..
T Consensus 361 ~~tV~e~l~~a~~~~----~D------vV--LIDTaGrl~~~~~---------lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKARN----ID------VL--IADTAGRLQNKSH---------LMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHHTT----CS------EE--EECCCCSCCCHHH---------HHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHhcC----CC------EE--EEeCCCccchhhh---------HHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 889999998875311 10 00 1233333222111 1112357888888764 457 466666
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcC
Q 003437 224 EPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQ 257 (820)
Q Consensus 224 EPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~ 257 (820)
++|+|.|.. +.++.+.+ -|.|.|++||-
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 688886543 34555554 48899999994
No 131
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.31 E-value=4.6e-13 Score=146.23 Aligned_cols=143 Identities=13% Similarity=0.115 Sum_probs=100.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCcc-------ccc--eEEEEccCCCCCCCCCHHHHH
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSY-------MKM--VSSYVMQDDQLFPMLTVFETF 153 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~-------~~~--~~gyv~Q~~~l~~~lTV~e~l 153 (820)
++|++++|+||||||||||++.|+|++.+ .+|+|.++|.++.... +.+ .+.|++|+..+.|.++|+|++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~--~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN--HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 68999999999999999999999998753 5799999999875311 122 245999999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 003437 154 MFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTS 233 (820)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~ 233 (820)
.++...... . -+++..|+.+..+..+ ++.-.+++++..++.+++||.+|.
T Consensus 205 ~~~~~~~~d----------~--vliDtaG~~~~~~~l~------------~eL~~i~ral~~de~llvLDa~t~------ 254 (328)
T 3e70_C 205 QHAKARGID----------V--VLIDTAGRSETNRNLM------------DEMKKIARVTKPNLVIFVGDALAG------ 254 (328)
T ss_dssp HHHHHHTCS----------E--EEEEECCSCCTTTCHH------------HHHHHHHHHHCCSEEEEEEEGGGT------
T ss_pred HHHHhccch----------h--hHHhhccchhHHHHHH------------HHHHHHHHHhcCCCCEEEEecHHH------
Confidence 876431100 0 0123334433222222 222348889988888888885554
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEEcCc
Q 003437 234 AYSVVEKVKDIAR-TGSIVLMTIHQP 258 (820)
Q Consensus 234 ~~~i~~~L~~l~~-~g~tvi~~~H~~ 258 (820)
.++++.++.+.+ .+.|+|++||..
T Consensus 255 -~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 255 -NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp -THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred -HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 466667777764 589999999965
No 132
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.30 E-value=8.8e-15 Score=160.65 Aligned_cols=174 Identities=21% Similarity=0.243 Sum_probs=115.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+.+|+++.|.. +.+|+++|+++.+|++++|+||||||||||+++|+|++.+ .+|+|.+.|.++..
T Consensus 30 ie~~~~~~~~~~------------~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~--~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 30 AESRRADHRAAV------------RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA--AGHKVAVLAVDPSS 95 (337)
T ss_dssp HTCSSHHHHHHH------------HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECGGG
T ss_pred HeeCCcccccCh------------HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh--CCCEEEEEEEcCcc
Confidence 566666666532 3489999999999999999999999999999999998743 57999999988743
Q ss_pred c-------cccceEEEEccCCCCCCCC------------CHHHHHHHHH-----------------------------Hh
Q 003437 128 S-------YMKMVSSYVMQDDQLFPML------------TVFETFMFAA-----------------------------EV 159 (820)
Q Consensus 128 ~-------~~~~~~gyv~Q~~~l~~~l------------TV~e~l~~~~-----------------------------~~ 159 (820)
. ..++.++|++|++.+++.. ++.|.+...- .+
T Consensus 96 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v 175 (337)
T 2qm8_A 96 TRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVL 175 (337)
T ss_dssp GSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEE
T ss_pred cccccchHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEE
Confidence 1 2345678999998776532 1233321110 00
Q ss_pred cCCCCCCHHHH---HHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhc------CCCEEEEeCCCCCCC
Q 003437 160 RLPPSISRDEK---KKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIH------KPSLLFLDEPTSGLD 230 (820)
Q Consensus 160 ~~~~~~~~~~~---~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~------~P~lLllDEPtsgLD 230 (820)
..+ . ..++. .+.+.++...+.+ +..|.. ....+|+|++|++..+++++. +|++++ ||++|
T Consensus 176 ~d~-~-~~~~~~~i~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~ 244 (337)
T 2qm8_A 176 MLP-G-AGDELQGIKKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLH 244 (337)
T ss_dssp ECS-C-C------CCTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTT
T ss_pred EcC-C-CcccHHHHHHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCC
Confidence 000 0 00110 0011122222222 122211 113589999999999999987 688887 99999
Q ss_pred HHHHHHHHHHHHHHHh
Q 003437 231 STSAYSVVEKVKDIAR 246 (820)
Q Consensus 231 ~~~~~~i~~~L~~l~~ 246 (820)
.....++++.|.++..
T Consensus 245 g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 245 GKGLDSLWSRIEDHRS 260 (337)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988753
No 133
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.27 E-value=3.2e-12 Score=123.70 Aligned_cols=45 Identities=11% Similarity=0.146 Sum_probs=37.5
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcE-EEEEEcCcc
Q 003437 214 IHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSI-VLMTIHQPS 259 (820)
Q Consensus 214 ~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~t-vi~~~H~~~ 259 (820)
+.+|++|++|||++ +|...+..+.+++..+.++|++ +|+++|.+.
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 45799999999998 6665688999999998888888 888888653
No 134
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.27 E-value=1.2e-13 Score=155.41 Aligned_cols=169 Identities=17% Similarity=0.154 Sum_probs=98.9
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHH
Q 003437 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFM 154 (820)
Q Consensus 75 L~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~ 154 (820)
-++++++++.|+.++|+|+|||||||||++|+|..+ .+.+.+.+. ....+++|.+++. ..+++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ftT--l~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFTT--LSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTCS--SCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccce--ecceeeEEEecCc--ceEEEEeccc
Confidence 479999999999999999999999999999999742 233333321 1223455554430 0001111000
Q ss_pred HHHHhcCCCCCCHHHH--HHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 003437 155 FAAEVRLPPSISRDEK--KKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDST 232 (820)
Q Consensus 155 ~~~~~~~~~~~~~~~~--~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~ 232 (820)
+.........+..... .++++.++..+++. +..+ ..||+|++||+.++++|+.+|.+|++ +.+|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~~-----~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEPL-----KTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCHH-----HHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCCH-----HHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 0000000001111110 11223334444543 2223 36999999999999999999999999 999998
Q ss_pred HHHHHHHHHHHHH-hCCcEEEEEEcCccHHHHhhcCE
Q 003437 233 SAYSVVEKVKDIA-RTGSIVLMTIHQPSYRIQMLLDR 268 (820)
Q Consensus 233 ~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~ 268 (820)
.+ ..++.+++.. +.|.+++.+|......+.++++.
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 77 5555555544 45777776664433335555543
No 135
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.25 E-value=4.7e-13 Score=144.69 Aligned_cols=121 Identities=19% Similarity=0.216 Sum_probs=83.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEE---CCEeCCCcc--cc-ceEEEEccCCCCC-----CCCCHHH
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRI---DGKPVTTSY--MK-MVSSYVMQDDQLF-----PMLTVFE 151 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i---~G~~~~~~~--~~-~~~gyv~Q~~~l~-----~~lTV~e 151 (820)
.+|++++|+||||||||||+|+|+ +.. +.+|+|.+ +|++++... .+ +.+|||+|++.+. +.+|+ |
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 469999999999999999999999 764 45799999 998876421 11 2479999998543 78899 8
Q ss_pred HH--HHH----HHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChHHHHHHHHHHH
Q 003437 152 TF--MFA----AEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGRRGVSGGERRRVSIGID 212 (820)
Q Consensus 152 ~l--~~~----~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSGGerqRv~ia~a 212 (820)
++ .|+ ..++........+...++.++++.++|.+ ..+.++. .|||.++|++.|||+
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~-----~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLK-----IIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHH-----HTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHH-----HHHHHHHHHHHHhcc
Confidence 88 454 11122111122234467899999999986 6676664 599988999999863
No 136
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.23 E-value=3.1e-13 Score=145.25 Aligned_cols=134 Identities=14% Similarity=0.093 Sum_probs=87.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHH---h
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAE---V 159 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~---~ 159 (820)
.++.+++|.|+||||||||++.|++++.+ .| . .++.+.+|+||+.+++. ++++|+.+... +
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C------CCceEEEeccccccCCh-HHHHHHhccccccch
Confidence 35889999999999999999999998732 12 0 13445667999998875 88899887521 0
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC--c--cccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 003437 160 RLPPSISRDEKKKRVYELLDQLGLR--S--ATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTS 233 (820)
Q Consensus 160 ~~~~~~~~~~~~~~v~~~l~~lgL~--~--~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~ 233 (820)
....+.+.....+...+.++.+.-. . .....+. .+...+||||+||+++|++...+|+|||+|||+++||+..
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 0000111111234455666666432 0 0111111 2335799999999998733322999999999999999853
No 137
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.22 E-value=6.1e-12 Score=124.84 Aligned_cols=47 Identities=13% Similarity=0.040 Sum_probs=42.4
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccH
Q 003437 214 IHKPSLLFLDEPTS-GLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 214 ~~~P~lLllDEPts-gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
+.+|++|+||||++ ++|+.....+.++|....++|+++|++||.+..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 45999999999995 999999999999999988889999999998754
No 138
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.21 E-value=9.2e-12 Score=136.61 Aligned_cols=137 Identities=17% Similarity=0.151 Sum_probs=74.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHc-CCCCCCCceEEEECCEeCCCc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAG-RIAQGSLEGSVRIDGKPVTTS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPS 164 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G-~~~~~~~~G~I~i~G~~~~~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 164 (820)
.+.|.||||+|||||+++|++ +.. +..|+|.++|.+.... ..+..+++++|.+.+.-..+ + .. .
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~---~ 103 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFG--PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------MG---N 103 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSC--TTCCC------------------CCEECSSEEEECCC----------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC--CCCCeEEecceeecccccccceeeeecccceEEecHh--h-------cC---C
Confidence 389999999999999999999 553 3579999999876422 22345678888764321111 0 00 0
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 003437 165 ISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI 244 (820)
Q Consensus 165 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l 244 (820)
......++.++++.+..++.+ .+ .||| +..+|+++|+|||++ ||..++..+.+.|.+.
T Consensus 104 ~~~~~~~~~i~~~~~~~~~~~----~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 104 NDRIVIQELLKEVAQMEQVDF----QD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY 161 (354)
T ss_dssp CCHHHHHHHHHHHTTTTC---------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHHHhccccc----cc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh
Confidence 111112222332222222221 11 3566 788999999999999 9999999999999886
Q ss_pred HhCCcEEEEEEcCccH
Q 003437 245 ARTGSIVLMTIHQPSY 260 (820)
Q Consensus 245 ~~~g~tvi~~~H~~~~ 260 (820)
. .+.++|+++|++..
T Consensus 162 ~-~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 162 S-KNIRLIMVCDSMSP 176 (354)
T ss_dssp T-TTEEEEEEESCSCS
T ss_pred c-CCCEEEEEeCCHHH
Confidence 4 46899999999863
No 139
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.17 E-value=1.4e-14 Score=163.11 Aligned_cols=135 Identities=15% Similarity=0.118 Sum_probs=91.6
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc-------cccceEEEEc-------
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS-------YMKMVSSYVM------- 138 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~-------~~~~~~gyv~------- 138 (820)
.+|+++ + .++|++++|+|||||||||||++|+|++.+ .+|+|.+.|.++... ..++.+++.+
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~ 232 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAI 232 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHH
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHH
Confidence 367777 4 379999999999999999999999998753 479999998876421 1222344544
Q ss_pred --cCCCC--CCC----CCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHH
Q 003437 139 --QDDQL--FPM----LTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSI 209 (820)
Q Consensus 139 --Q~~~l--~~~----lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~i 209 (820)
|++.. ++. .|+.+++.++..-+.. ..+......+ +.+.|..+|+.+.. .. ..|||||+|| |
T Consensus 233 Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~--~~-----~~LSgg~~QR--L 302 (418)
T 1p9r_A 233 LRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL--IS-----SSLLGVLAQR--L 302 (418)
T ss_dssp GGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH--HH-----HHEEEEEEEE--E
T ss_pred hccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH--HH-----HHHHHHHHHH--h
Confidence 88754 344 5889998876421100 0000011112 22346778887643 23 3699999999 9
Q ss_pred HHHHhcCCCEEE
Q 003437 210 GIDIIHKPSLLF 221 (820)
Q Consensus 210 a~aL~~~P~lLl 221 (820)
|++|+.+|+++.
T Consensus 303 araL~~~p~~~~ 314 (418)
T 1p9r_A 303 VRTLCPDCKEPY 314 (418)
T ss_dssp EEEECTTTCEEE
T ss_pred hhhhcCCCCccC
Confidence 999999999875
No 140
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.17 E-value=1e-10 Score=130.93 Aligned_cols=159 Identities=15% Similarity=0.213 Sum_probs=89.9
Q ss_pred ceeee-eEEEeCCcEEEEEcCCCCcHHHHHHHH--HcCCCCC---CCceEEEECCEeCCCccccceEEEEccCCCCCCCC
Q 003437 74 LLHDI-SGQAIRGEIMAIMGPSGAGKSTFLDAL--AGRIAQG---SLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPML 147 (820)
Q Consensus 74 iL~~v-s~~i~~Ge~~allGpnGsGKSTLl~~L--~G~~~~~---~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~l 147 (820)
-|+.+ .+-|++|++++|+||||||||||++.| .+..++. ...+.|+++++...
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~--------------------- 224 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTF--------------------- 224 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC---------------------
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCcc---------------------
Confidence 34443 367999999999999999999999954 4554321 12345666654311
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh-HHHHHHHHHHHHh--cCCCEEEEeC
Q 003437 148 TVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG-GERRRVSIGIDII--HKPSLLFLDE 224 (820)
Q Consensus 148 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG-GerqRv~ia~aL~--~~P~lLllDE 224 (820)
..........++ ++..+ .+++.+ .+.. ..++ .+.+.+.-+..++ .+|+++++||
T Consensus 225 ~~~rl~~~a~~~----gl~~~-------~vleni--------~~~~----~~~~~~~~~~l~~~~~~l~~~~~~llVIDs 281 (400)
T 3lda_A 225 RPVRLVSIAQRF----GLDPD-------DALNNV--------AYAR----AYNADHQLRLLDAAAQMMSESRFSLIVVDS 281 (400)
T ss_dssp CHHHHHHHHHHT----TCCHH-------HHHHTE--------EEEE----CCSHHHHHHHHHHHHHHHHHSCEEEEEEET
T ss_pred CHHHHHHHHHHc----CCChH-------hHhhcE--------EEec----cCChHHHHHHHHHHHHHHHhcCCceEEecc
Confidence 000000000000 01111 111111 1111 1222 2233333333333 4799999999
Q ss_pred CCCCCCHHHH------------HHHHHHHHHHHhC-CcEEEEEEcCcc------------------HHHHhhcCEEEEEe
Q 003437 225 PTSGLDSTSA------------YSVVEKVKDIART-GSIVLMTIHQPS------------------YRIQMLLDRIIVLA 273 (820)
Q Consensus 225 PtsgLD~~~~------------~~i~~~L~~l~~~-g~tvi~~~H~~~------------------~~i~~~~D~v~lL~ 273 (820)
|++.+|.... .++++.|++++++ |.|||+++|... ..+...+|.++.|+
T Consensus 282 ~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~ 361 (400)
T 3lda_A 282 VMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFK 361 (400)
T ss_dssp GGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEE
T ss_pred hhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEE
Confidence 9999997543 6788899999865 999999999821 12456688888887
Q ss_pred CCe
Q 003437 274 RGR 276 (820)
Q Consensus 274 ~G~ 276 (820)
+++
T Consensus 362 ~~~ 364 (400)
T 3lda_A 362 KGK 364 (400)
T ss_dssp ECS
T ss_pred ecC
Confidence 653
No 141
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.17 E-value=5e-14 Score=162.57 Aligned_cols=177 Identities=14% Similarity=0.056 Sum_probs=108.2
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCC---------
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQ--------- 142 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~--------- 142 (820)
..+++++++.+++|+.++|+|||||||||||++|+|+++ +.+|.|+++|.+--.......++++.|...
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~--~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP--PDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC--TTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC--CCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 357899999999999999999999999999999999985 457999999865211111234455554432
Q ss_pred -------------CCCCCCHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHHcCC-----Cc----cccccccCCCCCCC
Q 003437 143 -------------LFPMLTVFETFMFAAEVRLPPS-ISRDEKKKRVYELLDQLGL-----RS----ATHTYIGNEGRRGV 199 (820)
Q Consensus 143 -------------l~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL-----~~----~~~~~ig~~~~~~L 199 (820)
++..++..|++.+......... ++. .....+.++++++.. .. ..+..+. ....+
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT-~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~--~~~~~ 401 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYST-LHAGDINQMVYRLESEPLKVPRSMLQFLDIALV--QTMWV 401 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEE-EECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEE--EEEEE
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccc-cccCCHHHHHHHHHhcccccHHHHHhhccEEEE--EEEEE
Confidence 2234455554443322221100 000 000112333333322 21 1111000 11347
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE--EEcCccHHHHhhc
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLM--TIHQPSYRIQMLL 266 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~--~~H~~~~~i~~~~ 266 (820)
||||+||++++. + | |+|||+.....+++.|.++.++|.|+++ ++|+.+. +...|
T Consensus 402 s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~e-i~~~~ 457 (511)
T 2oap_1 402 RGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEK-MADFL 457 (511)
T ss_dssp SSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHH-HHHHH
T ss_pred eCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHH-HHHHc
Confidence 999999877641 2 7 9999998887777777777667888875 8898864 55555
No 142
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.10 E-value=4.6e-13 Score=136.52 Aligned_cols=164 Identities=18% Similarity=0.165 Sum_probs=87.9
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcC
Q 003437 82 AIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRL 161 (820)
Q Consensus 82 i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~ 161 (820)
.++|++++|+||||||||||+++|+|++.+. | ..+++|++++..++. +..+++........
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~---g---------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ---G---------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT---T---------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---C---------------CceEEEecCCCcCCH-HHHHHhcccccCCC
Confidence 4689999999999999999999999987431 2 123444444433321 11111100000000
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHH-HHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q 003437 162 PPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIG-IDIIHKPSLLFLDEPTSGLDSTSAYSVVEK 240 (820)
Q Consensus 162 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia-~aL~~~P~lLllDEPtsgLD~~~~~~i~~~ 240 (820)
+..... ....+.+..+...+..+..+.+.. ..+|+||+||++++ ++++.++.++++|||.-
T Consensus 80 ~~~~~~----~~~~~~l~~l~~~~~i~~p~~d~~-~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~------------- 141 (208)
T 3c8u_A 80 PETFDF----EGFQRLCHALKHQERVIYPLFDRA-RDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW------------- 141 (208)
T ss_dssp GGGBCH----HHHHHHHHHHHHCSCEEEEEEETT-TTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-------------
T ss_pred CchhhH----HHHHHHHHHHhcCCceecccCCcc-ccCCCCCceEEcCCCcEEEECCceeccCCchh-------------
Confidence 000111 122223333221222222233222 25899999999987 77788888877888741
Q ss_pred HHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchhhhh
Q 003437 241 VKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHL 290 (820)
Q Consensus 241 L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f 290 (820)
..+.+.--.+|++.+..+..+.+.+.|. +..|+ +.+++....
T Consensus 142 -~~l~~~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~ 183 (208)
T 3c8u_A 142 -RDLTAIWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARA 183 (208)
T ss_dssp -GGGGGTCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHH
T ss_pred -HHHHHhcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHH
Confidence 1112222367777777765566666662 34454 455555443
No 143
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.07 E-value=1.5e-13 Score=153.23 Aligned_cols=170 Identities=16% Similarity=0.136 Sum_probs=118.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCC----------CCCCceEEEECCEeCCCc----cccceE---EEEccCCCC
Q 003437 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRIA----------QGSLEGSVRIDGKPVTTS----YMKMVS---SYVMQDDQL 143 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTLl~~L~G~~~----------~~~~~G~I~i~G~~~~~~----~~~~~~---gyv~Q~~~l 143 (820)
.+.+|+.++|+|+||||||||+|+|+|... ..+..|.|.++|..+... ..++.+ .++.+.+-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 446899999999999999999999999321 135789999998543210 112222 467777777
Q ss_pred CCCCCHHHHH--HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCC--CE
Q 003437 144 FPMLTVFETF--MFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKP--SL 219 (820)
Q Consensus 144 ~~~lTV~e~l--~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P--~l 219 (820)
.+..+..|+| .|...++. ++.++..++..+ +.. +..+||+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~--d~~-----i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD--DAE-----IIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC--TTC-----SSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc--cce-----eeeecccc------------Ccchhh
Confidence 7777776655 44433331 111222222221 111 22356653 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEEcCccHHHHhhcCEEE-EEeCC-eEEEEcCcc
Q 003437 220 LFLDEPTSGLDSTSAYSVVEKVKDI-ARTGSIVLMTIHQPSYRIQMLLDRII-VLARG-RLVYMGSPV 284 (820)
Q Consensus 220 LllDEPtsgLD~~~~~~i~~~L~~l-~~~g~tvi~~~H~~~~~i~~~~D~v~-lL~~G-~iv~~G~~~ 284 (820)
+++|||+.++|+......++.++++ ++.|.|++ +|... .+.++||++. +|.+| ++++.|+..
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhccCCceeecCCCC
Confidence 9999999999999999999999998 76777764 99886 4788999999 99999 888777654
No 144
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.02 E-value=2.2e-14 Score=145.39 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=42.3
Q ss_pred HHH-HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 209 IGI-DIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 209 ia~-aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
.++ +++.+|++++|||+|+++|..+...|.+.|.++.++ +...|.+ ..||+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence 345 677788888889999999999999999999887653 2233521 45899887753
No 145
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.01 E-value=1.3e-12 Score=143.21 Aligned_cols=166 Identities=19% Similarity=0.165 Sum_probs=106.2
Q ss_pred cceeeeeEEEeCC-------cEEEEEcCCCCcHHHHHHHHHcCCCC--CCCceEEEECCEeCCC---ccccceEEEEccC
Q 003437 73 YLLHDISGQAIRG-------EIMAIMGPSGAGKSTFLDALAGRIAQ--GSLEGSVRIDGKPVTT---SYMKMVSSYVMQD 140 (820)
Q Consensus 73 ~iL~~vs~~i~~G-------e~~allGpnGsGKSTLl~~L~G~~~~--~~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~ 140 (820)
.+++++++.+++| +.++|+||||+|||||+++|+|.+.. .+++|.+..++.++.. ...+..+.|++|.
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~ 111 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcch
Confidence 4889999999877 89999999999999999999997621 1245666665554421 1124568899998
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCE
Q 003437 141 DQLFPMLTVFETFMFAAEVRLPPS-ISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSL 219 (820)
Q Consensus 141 ~~l~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~l 219 (820)
+.+.+ ++.|+|..........- .......+.+...++.++|.. +++.++ .||+|+|||+.++
T Consensus 112 ~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~-----~Ls~~l~sR~~l~--------- 174 (334)
T 1in4_A 112 HRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSG-----LLSSPLRSRFGII--------- 174 (334)
T ss_dssp GGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGG-----GSCHHHHTTCSEE---------
T ss_pred hhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcc-----cCCHHHHHhcCce---------
Confidence 87765 78888865443221000 011222344555666666654 455554 6999999998654
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCE
Q 003437 220 LFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDR 268 (820)
Q Consensus 220 LllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~ 268 (820)
.+||+.+..++.++|++.++. + +.|+++ .+..++++
T Consensus 175 -------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~-~~~~ia~~ 211 (334)
T 1in4_A 175 -------LELDFYTVKELKEIIKRAASLMD-----VEIEDA-AAEMIAKR 211 (334)
T ss_dssp -------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHH-HHHHHHHT
T ss_pred -------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHH-HHHHHHHh
Confidence 788999999999999998753 4 246654 35555553
No 146
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.01 E-value=1.4e-11 Score=133.07 Aligned_cols=103 Identities=23% Similarity=0.343 Sum_probs=68.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEE---CCEeCCCcc--c-cceEEEEccCCC------------
Q 003437 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRI---DGKPVTTSY--M-KMVSSYVMQDDQ------------ 142 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i---~G~~~~~~~--~-~~~~gyv~Q~~~------------ 142 (820)
.+.+|++++|+||||||||||||+|+|+.. +.+|+|.+ +|++++... . .+.+|||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 345799999999999999999999999885 45799999 898875421 1 134789999874
Q ss_pred ----CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccc
Q 003437 143 ----LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIG 192 (820)
Q Consensus 143 ----l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig 192 (820)
++|.+|+ ||+.|.. +. ...+...++.++|+.+||+ +..+.++.
T Consensus 243 ~~~~l~~~~~~-~n~~~~~-~~-----~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSD-CN-----HVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTT-CC-----SSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHhccc-ccCcCCC-Cc-----CCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 5889999 9988752 11 1123346789999999995 55666553
No 147
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.99 E-value=1.2e-13 Score=147.24 Aligned_cols=128 Identities=16% Similarity=0.254 Sum_probs=89.6
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCcc---ccceEEEEccCC-CCCCCC
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSY---MKMVSSYVMQDD-QLFPML 147 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~---~~~~~gyv~Q~~-~l~~~l 147 (820)
..+++++++.+++| ++|+||||||||||+|+|+|... + |.|.++|.++.... ..+.+++++|+. ...|.+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~--~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG--L--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT--C--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC--C--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 45899999999999 99999999999999999999873 2 89999998774321 233467788764 455666
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 003437 148 TVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTS 227 (820)
Q Consensus 148 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPts 227 (820)
++.|++......+ .. .... .+....+..+. .|||||+||+.|++++..+|++| ||++.
T Consensus 107 ~~~Deid~~~~~r-------~~--~~~~------~~~~~~~~~l~-----~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 107 IFFDEVDALCPRR-------SD--RETG------ASVRVVNQLLT-----EMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEETCTTTCC------------------------CTTHHHHHHH-----HHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred Eeeehhhhhhccc-------CC--Ccch------HHHHHHHHHHH-----hhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 6667665432111 00 0000 12233344443 59999999999999999999975 98864
No 148
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.98 E-value=4.4e-11 Score=129.10 Aligned_cols=117 Identities=17% Similarity=0.246 Sum_probs=67.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEE---CCEeCCCcc-ccce-EEEEccCCCCCC----CCCHHH
Q 003437 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRI---DGKPVTTSY-MKMV-SSYVMQDDQLFP----MLTVFE 151 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i---~G~~~~~~~-~~~~-~gyv~Q~~~l~~----~lTV~e 151 (820)
++.+|++++|+||||+|||||+|+|+|... +.+|+|.+ +|+.++... ..+. .||++|.+.+.+ .+|+ |
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-H
Confidence 456899999999999999999999999874 45799999 888765321 1112 689999987654 6899 8
Q ss_pred HHH--HHH------HhcCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCChHHHHH
Q 003437 152 TFM--FAA------EVRLPPSISRDEKKKRVYELLDQLGLRSAT-HTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 152 ~l~--~~~------~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~ig~~~~~~LSGGerqR 206 (820)
++. |.. .|+........+....+.++++.++|.+.+ +.+. .++.|++||
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~------~lls~~~~~ 303 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYV------EFMTEIKDR 303 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH------HHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHH------HHHHHHhhc
Confidence 883 331 112111112223345789999999998643 3333 377787763
No 149
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.93 E-value=1.5e-11 Score=133.21 Aligned_cols=98 Identities=14% Similarity=0.143 Sum_probs=77.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEE-------------------eCCcEEEEEcCCCCcHHHHHHHHHc
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQA-------------------IRGEIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i-------------------~~Ge~~allGpnGsGKSTLl~~L~G 107 (820)
.|+++||++.|. ++++++++.+ .+|++++|+||||||||||+++|+|
T Consensus 37 ~i~~~~v~~~y~--------------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 37 DLSLEEVAEIYL--------------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp TCCHHHHHHTHH--------------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccchHhHHHHHH--------------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 388888888772 3788888887 8999999999999999999999999
Q ss_pred CCCCCCCceEEEE---CCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhc
Q 003437 108 RIAQGSLEGSVRI---DGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVR 160 (820)
Q Consensus 108 ~~~~~~~~G~I~i---~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~ 160 (820)
++...+.+|+|.+ ||...... .++.++++ |+..+++.+|+.+++.+...++
T Consensus 103 ~l~~~~~~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 103 LLSRWPEHRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHTTSTTCCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHhhCCCCCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 8741145799999 88775422 23446788 8777788899999998876654
No 150
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.89 E-value=1e-09 Score=125.18 Aligned_cols=181 Identities=13% Similarity=0.144 Sum_probs=112.3
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCce-EEEECCEeCCCccccce-EEEEccCCCCCCCCCH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEG-SVRIDGKPVTTSYMKMV-SSYVMQDDQLFPMLTV 149 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G-~I~i~G~~~~~~~~~~~-~gyv~Q~~~l~~~lTV 149 (820)
...|+++.+-+++|+++.|.|+||+|||||+..|++.... ..| .|.+.+.+.+.....++ .+... ....
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~s~~~l~~r~~~~~~-------~~~~ 260 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEMSAQQLVMRMLCAEG-------NINA 260 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSSCHHHHHHHHHHHHH-------TCCH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCCCHHHHHHHHHHHHc-------CCCH
Confidence 3578888888999999999999999999999999885421 123 34333322221110000 00000 0000
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHh--cCCCEEEEeCCCC
Q 003437 150 FETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDII--HKPSLLFLDEPTS 227 (820)
Q Consensus 150 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~--~~P~lLllDEPts 227 (820)
+. ++. ..++.++ .+++.+.++.++..+.. +.+ ..++|.+|.+ +.++.++ .+|+++++|+++.
T Consensus 261 -~~------l~~-g~l~~~~-~~~~~~a~~~l~~~~l~---i~d--~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~ 324 (454)
T 2r6a_A 261 -QN------LRT-GKLTPED-WGKLTMAMGSLSNAGIY---IDD--TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQL 324 (454)
T ss_dssp -HH------HHT-SCCCHHH-HHHHHHHHHHHHSSCEE---EEC--CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGG
T ss_pred -HH------Hhc-CCCCHHH-HHHHHHHHHHHhcCCEE---EEC--CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHH
Confidence 00 111 1233333 34566666666543322 211 2369999987 5667676 6899999999999
Q ss_pred CCC--------HHHHHHHHHHHHHHHhC-CcEEEEEEc---------C--ccH-------HHHhhcCEEEEEeCCeE
Q 003437 228 GLD--------STSAYSVVEKVKDIART-GSIVLMTIH---------Q--PSY-------RIQMLLDRIIVLARGRL 277 (820)
Q Consensus 228 gLD--------~~~~~~i~~~L~~l~~~-g~tvi~~~H---------~--~~~-------~i~~~~D~v~lL~~G~i 277 (820)
..+ .....++.+.|+.++++ |.+||+++| + |.. .+...+|.|++|++++.
T Consensus 325 ~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 325 IQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp SCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 774 23446788888888864 999999999 2 420 36678999999987653
No 151
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.89 E-value=6.6e-11 Score=135.78 Aligned_cols=163 Identities=18% Similarity=0.180 Sum_probs=101.9
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHc--CCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCC--CHHHH
Q 003437 77 DISGQAIRGEIMAIMGPSGAGKSTFLDALAG--RIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPML--TVFET 152 (820)
Q Consensus 77 ~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G--~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~l--TV~e~ 152 (820)
.+++.+.++..++|.|++||||||+|++|.. +... ..|++.+.+.+.....+. ....+|++ +|.++
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~--~p~~v~l~liDpK~~el~--------~~~~lPhl~~~Vvtd 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA--QPEDVRFIMIDPKMLELS--------VYEGIPHLLTEVVTD 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC--CTTTEEEEEECCSSSGGG--------GGTTCTTBSSSCBCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC--CCceEEEEEECCchhhhh--------hhccCCcccceeecC
Confidence 4678888999999999999999999999875 2322 347777776665431111 10111221 12222
Q ss_pred HHHHHH-hcCCCCCCHHHHHHHHHHHHHHcCCCccccc--cccCCCCCCCChHHHHHH----------HHHHHHhcCCC-
Q 003437 153 FMFAAE-VRLPPSISRDEKKKRVYELLDQLGLRSATHT--YIGNEGRRGVSGGERRRV----------SIGIDIIHKPS- 218 (820)
Q Consensus 153 l~~~~~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~--~ig~~~~~~LSGGerqRv----------~ia~aL~~~P~- 218 (820)
...+.. ++ ...++.++|. ++++..|+.+..+. .+. ..+|+||+||. .+++++...|.
T Consensus 229 ~~~a~~~L~----~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~i 299 (512)
T 2ius_A 229 MKDAANALR----WCVNEMERRY-KLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYI 299 (512)
T ss_dssp HHHHHHHHH----HHHHHHHHHH-HHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEE
T ss_pred HHHHHHHHH----HHHHHHHHHH-HHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcE
Confidence 222211 11 1134555554 78888998765322 221 24788887752 35566677898
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC----CcEEEEEEcCcc
Q 003437 219 LLFLDEPTSGLDSTSAYSVVEKVKDIART----GSIVLMTIHQPS 259 (820)
Q Consensus 219 lLllDEPtsgLD~~~~~~i~~~L~~l~~~----g~tvi~~~H~~~ 259 (820)
++++||++.-+|.. ...+.+.|.++++. |.++|++||.|+
T Consensus 300 vlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 300 VVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 79999999988843 34566666666542 789999999997
No 152
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.88 E-value=1.2e-10 Score=120.47 Aligned_cols=60 Identities=18% Similarity=0.193 Sum_probs=45.6
Q ss_pred cCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCcEEEEEEcCccHH-------HHhhcCEEEEEeC
Q 003437 215 HKPSLLFLDEPTSGL--DSTSAYSVVEKVKDIA-RTGSIVLMTIHQPSYR-------IQMLLDRIIVLAR 274 (820)
Q Consensus 215 ~~P~lLllDEPtsgL--D~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~-------i~~~~D~v~lL~~ 274 (820)
.+|+++++|+|++.+ |+....+++..|.+++ +.|.|||+++|..... +.+.+|.++.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 6655566667777665 4699999999987531 3567899999865
No 153
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.85 E-value=1.3e-09 Score=117.82 Aligned_cols=113 Identities=14% Similarity=0.236 Sum_probs=80.8
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHH
Q 003437 78 ISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAA 157 (820)
Q Consensus 78 vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~ 157 (820)
+++..++|++++|+|||||||||+++.|++.+.+ ..|+|.+.+.+.... ...|
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~~r~-------------------~a~e------ 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADTFRA-------------------AAIE------ 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECTTCH-------------------HHHH------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEccccccH-------------------HHHH------
Confidence 4555678999999999999999999999998743 357787766553210 0011
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH---HHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 003437 158 EVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRV---SIGIDIIHKPSLLFLDEPTSGLDSTSA 234 (820)
Q Consensus 158 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv---~ia~aL~~~P~lLllDEPtsgLD~~~~ 234 (820)
....+++.+|+.. + ...|||+.+++ +|++++..+|+++|+|||.. ....
T Consensus 150 ---------------qL~~~~~~~gl~~-----~-----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 150 ---------------QLKIWGERVGATV-----I-----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ---------------HHHHHHHHHTCEE-----E-----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ---------------HHHHHHHHcCCcE-----E-----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 1223445556642 2 24789999999 99999999999999999974 3455
Q ss_pred HHHHHHHHHHH
Q 003437 235 YSVVEKVKDIA 245 (820)
Q Consensus 235 ~~i~~~L~~l~ 245 (820)
..+++.|+++.
T Consensus 202 ~~l~~eL~~l~ 212 (306)
T 1vma_A 202 KNLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56677676664
No 154
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.81 E-value=5.8e-09 Score=114.78 Aligned_cols=154 Identities=15% Similarity=0.278 Sum_probs=90.6
Q ss_pred ceeeee--EEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 74 LLHDIS--GQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 74 iL~~vs--~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
-|+.+- +-+++|+++.|.||||+|||||+..++...... .| .+.|+.-+..+- +
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~--g~----------------~vlyi~~E~~~~------~ 103 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA--GG----------------IAAFIDAEHALD------P 103 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT--TC----------------CEEEEESSCCCC------H
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC--CC----------------eEEEEECCCCcC------H
Confidence 344443 478999999999999999999988887643110 12 233444332110 0
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcC--CCEEEEeCCCCCC
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHK--PSLLFLDEPTSGL 229 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~--P~lLllDEPtsgL 229 (820)
. . .+.+|+.. .+-.+-. ..+. .+-+.++++++.+ |+++++|||++.+
T Consensus 104 ~--~----------------------a~~lG~~~-~~l~i~~----~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 104 E--Y----------------------AKKLGVDT-DSLLVSQ----PDTG--EQALEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp H--H----------------------HHHTTCCG-GGCEEEC----CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred H--H----------------------HHHcCCCH-HHeEEec----CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhc
Confidence 0 0 11222211 0111111 1233 2345678888755 9999999999998
Q ss_pred ----------CH---HHHHHHHHHHHHH----HhCCcEEEEEEcCccH---------------HHHhhcCEEEEEeCCeE
Q 003437 230 ----------DS---TSAYSVVEKVKDI----ARTGSIVLMTIHQPSY---------------RIQMLLDRIIVLARGRL 277 (820)
Q Consensus 230 ----------D~---~~~~~i~~~L~~l----~~~g~tvi~~~H~~~~---------------~i~~~~D~v~lL~~G~i 277 (820)
|+ ..++.+.+.|++| .+.|.|||++.|.... .+..+||.++.++++++
T Consensus 153 ~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~ 232 (349)
T 2zr9_A 153 PRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIET 232 (349)
T ss_dssp CHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEE
T ss_pred chhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeee
Confidence 33 2223455555555 3459999999996431 25568999999988876
Q ss_pred EEEcC
Q 003437 278 VYMGS 282 (820)
Q Consensus 278 v~~G~ 282 (820)
+..|+
T Consensus 233 ~k~g~ 237 (349)
T 2zr9_A 233 LKDGT 237 (349)
T ss_dssp ECSSS
T ss_pred eecCc
Confidence 65544
No 155
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.77 E-value=1.3e-08 Score=109.52 Aligned_cols=118 Identities=14% Similarity=0.068 Sum_probs=82.4
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHH
Q 003437 76 HDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMF 155 (820)
Q Consensus 76 ~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~ 155 (820)
+++++. +|++++|+|+||+||||+++.|++.+.+ ..|+|.+.+.++.... ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d~~~~~------------------~~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRPA------------------AR-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSCHH------------------HH-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCcccHh------------------HH-HHH--
Confidence 677777 9999999999999999999999998743 3588888776543210 00 111
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHH
Q 003437 156 AAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEP-TSGLDSTSA 234 (820)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEP-tsgLD~~~~ 234 (820)
..+.+..|+.-... + ..-.-.+.+|.+|+.+...+++++|+||| +.++|....
T Consensus 146 -------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 01223345543210 0 01234466789999988899999999999 999998888
Q ss_pred HHHHHHHHHH
Q 003437 235 YSVVEKVKDI 244 (820)
Q Consensus 235 ~~i~~~L~~l 244 (820)
.++.+..+.+
T Consensus 200 ~~l~~~~~~~ 209 (295)
T 1ls1_A 200 GELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhc
Confidence 8877776654
No 156
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.73 E-value=4.4e-09 Score=119.85 Aligned_cols=51 Identities=14% Similarity=0.079 Sum_probs=47.1
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.+|+|+|+++++ |+++|+|||||||||||++|+|++. +.+|+|.++|+++.
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTEA 68 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEcc
Confidence 489999999999 9999999999999999999999985 46799999998875
No 157
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.73 E-value=7.9e-09 Score=111.19 Aligned_cols=140 Identities=16% Similarity=0.250 Sum_probs=87.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP 162 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~ 162 (820)
.+|++++|+||||+||||+++.|++.+.+ .+| +.+.++.+|.. ..++.|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~--~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML--EKH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH--TTC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH--hcC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 47999999999999999999999998742 235 23566666652 235556554332
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 003437 163 PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVK 242 (820)
Q Consensus 163 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~ 242 (820)
+.+|+... . ..+. ..-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~----~------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLE----V------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCC----B------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeE----e------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 12233211 0 1122 33355555 45999999999 99999876654444433
Q ss_pred HHH---hCCcEEEE-EEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 243 DIA---RTGSIVLM-TIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 243 ~l~---~~g~tvi~-~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
-+. ..+.++++ ++|... ++.+.+|++..+..+.++.
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCEEEE
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCEEEE
Confidence 332 12334444 378765 4777788766666677775
No 158
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.71 E-value=7.8e-10 Score=111.38 Aligned_cols=67 Identities=24% Similarity=0.342 Sum_probs=46.1
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCcc---ccceEEEEccCCCCCCCCCHHH
Q 003437 79 SGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSY---MKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 79 s~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~---~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
|+++.+|++++|+||||||||||+++|+|+.+ .+.+++..+.... .+..++|++|++.+++.+++.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEG 70 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHT
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcC
Confidence 56778999999999999999999999999852 4677776654321 2345678998765554444433
No 159
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.68 E-value=1.5e-11 Score=130.91 Aligned_cols=123 Identities=16% Similarity=0.287 Sum_probs=83.1
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc---cccceEEEEccCCC-CCCCCC
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS---YMKMVSSYVMQDDQ-LFPMLT 148 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~---~~~~~~gyv~Q~~~-l~~~lT 148 (820)
.+++++++.+++| ++|+||||+|||||+++|++... .|.|.+++.++... ...+.+++++|+.. ..|.++
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 136 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 136 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEE
Confidence 5789999999999 99999999999999999999763 58999998765321 11233567777643 566778
Q ss_pred HHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCE
Q 003437 149 VFETFMFAAEVRLPP-SISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSL 219 (820)
Q Consensus 149 V~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~l 219 (820)
+.|++......+... ....++..+.+.+++. .|||||+||+.|++++..+|++
T Consensus 137 ~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 137 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEETHHHHHCC--------CHHHHHHHHHHHH------------------HHTTCCTTCCEEEEEEESCTTS
T ss_pred ehhhhHhhhcccccccCCcchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEecCCchh
Confidence 888885432211000 0011122223333321 4899999999999999999976
No 160
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.67 E-value=2.4e-09 Score=107.05 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI 244 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l 244 (820)
+++.+|++|+.+|+++++| ||+||.....++++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4578899999999999999 9999999999999988763
No 161
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.65 E-value=2.1e-11 Score=127.70 Aligned_cols=123 Identities=16% Similarity=0.286 Sum_probs=82.4
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc---cccceEEEEccCC-CCCCCCC
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS---YMKMVSSYVMQDD-QLFPMLT 148 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~---~~~~~~gyv~Q~~-~l~~~lT 148 (820)
.+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++... ...+.+++++|+. ...|.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 112 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEE
Confidence 4789999999999 99999999999999999999763 58999988765321 1123346677764 3566777
Q ss_pred HHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCE
Q 003437 149 VFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSL 219 (820)
Q Consensus 149 V~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~l 219 (820)
+.|++......+.. .....++..+.+.+++. .|||||+||+.|++++..+|++
T Consensus 113 ~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 113 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp EEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG
T ss_pred EehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh
Confidence 77887443221110 00011222233333332 3889999999999999999986
No 162
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.63 E-value=5e-10 Score=132.26 Aligned_cols=159 Identities=16% Similarity=0.126 Sum_probs=98.7
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCC---------
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQ--------- 142 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~--------- 142 (820)
..+++++++.+.+|+.++|+||||+|||||+++|++++.+ ...|.+.+++.+.+. ....++|+++...
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~~~ 123 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPT-ETLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKYRE 123 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC-SSCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCc-ccCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHHHH
Confidence 4589999999999999999999999999999999998853 234889998877653 2345788876420
Q ss_pred -------------CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHH
Q 003437 143 -------------LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSI 209 (820)
Q Consensus 143 -------------l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~i 209 (820)
.+..+++.+|+.....-..+...- .+..... -+.+|.-+...... .++|+|++|++..
T Consensus 124 ~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v-~~~~~~~---~~L~G~~~~~~~~~-----g~~~~g~~~~i~~ 194 (604)
T 3k1j_A 124 KAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFI-DATGAHA---GALLGDVRHDPFQS-----GGLGTPAHERVEP 194 (604)
T ss_dssp HHHHHTCC-----------CCCEEEECCTTCSSCCEE-ECTTCCH---HHHHCEECCCCC---------CCCCGGGGEEC
T ss_pred hhccchhhhhhcccccccccccceeeccccCCCCCEE-EcCCCCH---HhcCceEEechhhc-----CCccccccccccC
Confidence 111111111111000000000000 0000001 11222211111111 3699999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 003437 210 GIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKD 243 (820)
Q Consensus 210 a~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~ 243 (820)
+.....++.+||+||... |++.....+.+.|.+
T Consensus 195 g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999998 899888888887764
No 163
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.46 E-value=7.6e-09 Score=106.91 Aligned_cols=59 Identities=20% Similarity=0.195 Sum_probs=39.8
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc-----------cccceEEEEccC
Q 003437 79 SGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS-----------YMKMVSSYVMQD 140 (820)
Q Consensus 79 s~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~-----------~~~~~~gyv~Q~ 140 (820)
++++.+ ++++|+|||||||||||++|+|++.+ .+|+|.++|.++... ..+..++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP--DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC--CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc--CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 89999999999999999999999854 579999999887211 124567898884
No 164
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.43 E-value=9.9e-08 Score=104.95 Aligned_cols=49 Identities=24% Similarity=0.367 Sum_probs=35.9
Q ss_pred ceeeee--EEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEE-EECCEe
Q 003437 74 LLHDIS--GQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSV-RIDGKP 124 (820)
Q Consensus 74 iL~~vs--~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I-~i~G~~ 124 (820)
-|+.+- +-+.+|+++.|.||||+|||||+..+++...+ ..|.| ++++..
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~ 99 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEH 99 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEeccc
Confidence 455543 47899999999999999999999999986532 23544 555543
No 165
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.40 E-value=4e-08 Score=108.73 Aligned_cols=151 Identities=15% Similarity=0.172 Sum_probs=88.5
Q ss_pred CCcE-EEEEcCCCCcHHHHHHHHHcCCCC---------CCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH--
Q 003437 84 RGEI-MAIMGPSGAGKSTFLDALAGRIAQ---------GSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE-- 151 (820)
Q Consensus 84 ~Ge~-~allGpnGsGKSTLl~~L~G~~~~---------~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e-- 151 (820)
.|-. ++|+|++|||||||+|.|+|.... ++..|.|.++|.++. .....|++.+.+. ..|..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~----~lve~f~ 249 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPP----QIVDAFF 249 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCG----GGHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCH----HHHHHHH
Confidence 3444 999999999999999999997531 145799999987642 1223455544221 12221
Q ss_pred -HHHHHHHh------cCCCCCC--HHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHH----HHH-hcCC
Q 003437 152 -TFMFAAEV------RLPPSIS--RDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIG----IDI-IHKP 217 (820)
Q Consensus 152 -~l~~~~~~------~~~~~~~--~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia----~aL-~~~P 217 (820)
.+...... ....... ..+..+.+.++++.+++.+..--.+++ ....+|+|+++|+.++ +++ ..+|
T Consensus 250 ~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~ 328 (364)
T 2qtf_A 250 VTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIF 328 (364)
T ss_dssp HHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 11110000 0001111 123334567788888876543111111 1124788888988887 555 4344
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 003437 218 SLLFLDEPTSGLDSTSAYSVVEKVKDIAR 246 (820)
Q Consensus 218 ~lLllDEPtsgLD~~~~~~i~~~L~~l~~ 246 (820)
++ +|+|++|.....++.+.|.++..
T Consensus 329 ~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 329 DV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred cE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 54 89999999999999999988754
No 166
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.36 E-value=1.9e-07 Score=93.46 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA 245 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~ 245 (820)
...|++|+.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999999887754
No 167
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.36 E-value=1.6e-08 Score=102.06 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=40.1
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCcc--ccceEEEEccCC
Q 003437 79 SGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSY--MKMVSSYVMQDD 141 (820)
Q Consensus 79 s~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~--~~~~~gyv~Q~~ 141 (820)
....++|++++|+||||||||||+++|++.+ |.+.++|.++.... .+...|+++|+.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~~ 81 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTDE 81 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCCc
Confidence 3556789999999999999999999999965 88999987764321 112346677653
No 168
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.35 E-value=8.5e-10 Score=122.43 Aligned_cols=142 Identities=17% Similarity=0.143 Sum_probs=82.6
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCC-CCCCCCHH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQ-LFPMLTVF 150 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~-l~~~lTV~ 150 (820)
..+|+++++.+++|++++|+||||||||||+++|+|.. +|++..-+.+ .......+|+++|... ++..++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~--~~~~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLP--LDRLNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSC--TTTHHHHHGGGTTCSCEEETTCCCS
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEecc--chhHHHHHHHhcchhHHHHHHHHHH
Confidence 35899999999999999999999999999999999954 4777652111 1111223566777653 23333322
Q ss_pred HHHHHHHHhc-CCCCCCHHHHHHHHHHHHH---HcCCCc-cc---cc-----cccCCCCCCCChHHHHHHHHHHHHhcCC
Q 003437 151 ETFMFAAEVR-LPPSISRDEKKKRVYELLD---QLGLRS-AT---HT-----YIGNEGRRGVSGGERRRVSIGIDIIHKP 217 (820)
Q Consensus 151 e~l~~~~~~~-~~~~~~~~~~~~~v~~~l~---~lgL~~-~~---~~-----~ig~~~~~~LSGGerqRv~ia~aL~~~P 217 (820)
..+ .+ .... ........+.+.++ .+.+.. .. +. .+ +.....+++|+++|+..+++++..|
T Consensus 229 ~~~-----~r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~l-d~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 229 GGE-----SRDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIV-TMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp TTT-----TTTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEE-EECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHH-----Hhhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCccc-ChhHHhhcHHHHHHHhhhhccCCCC
Confidence 110 00 0000 00001122333332 111110 00 00 01 1123458999999999988888999
Q ss_pred CEEE-EeCCCC
Q 003437 218 SLLF-LDEPTS 227 (820)
Q Consensus 218 ~lLl-lDEPts 227 (820)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9877 999997
No 169
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.33 E-value=4.9e-07 Score=103.22 Aligned_cols=59 Identities=22% Similarity=0.420 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHH----hCCcEEEEEEcCcc
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPT----------SGLDSTSAYSVVEKVKDIA----RTGSIVLMTIHQPS 259 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPt----------sgLD~~~~~~i~~~L~~l~----~~g~tvi~~~H~~~ 259 (820)
|++++|..++++....|.+||+||+. .|.|......+.++|..+- ..+..||.+||+++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 57788888999999999999999994 4677777677777777663 34788999999985
No 170
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.31 E-value=1.5e-07 Score=96.96 Aligned_cols=38 Identities=29% Similarity=0.265 Sum_probs=22.9
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH-cCC
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALA-GRI 109 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~-G~~ 109 (820)
.+..+++|+++++|++++|+||||||||||+++|+ |+.
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35789999999999999999999999999999999 986
No 171
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.21 E-value=8.1e-07 Score=96.98 Aligned_cols=129 Identities=10% Similarity=0.130 Sum_probs=85.2
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHH
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFET 152 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~ 152 (820)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++..... .| ..+.|+.= .++..+
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---------~g---------~~Vl~fSl------Ems~~q- 88 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---------DD---------RGVAVFSL------EMSAEQ- 88 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---------TT---------CEEEEEES------SSCHHH-
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEeC------CCCHHH-
Confidence 357777778999999999999999999999888764310 11 12334321 233322
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 003437 153 FMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDST 232 (820)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~ 232 (820)
...++......+++.+..+ | .||.+|.+|+..|...+.++++++.|+|...
T Consensus 89 -----------------l~~Rlls~~~~v~~~~l~~---g-----~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s---- 139 (338)
T 4a1f_A 89 -----------------LALRALSDLTSINMHDLES---G-----RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR---- 139 (338)
T ss_dssp -----------------HHHHHHHHHHCCCHHHHHH---T-----CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC----
T ss_pred -----------------HHHHHHHHhhCCCHHHHhc---C-----CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc----
Confidence 2223323333333322221 2 4999999999999999999999999998654
Q ss_pred HHHHHHHHHHHHHhC--CcEEEEEEc
Q 003437 233 SAYSVVEKVKDIART--GSIVLMTIH 256 (820)
Q Consensus 233 ~~~~i~~~L~~l~~~--g~tvi~~~H 256 (820)
..+|...++++.++ |..+|++-|
T Consensus 140 -i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 140 -IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp -HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred -HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 34677777777653 567766644
No 172
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.18 E-value=1.5e-06 Score=85.63 Aligned_cols=36 Identities=28% Similarity=0.366 Sum_probs=33.1
Q ss_pred ce--eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003437 74 LL--HDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIA 110 (820)
Q Consensus 74 iL--~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~ 110 (820)
.+ +++++.+.+| +++|+||||||||||+++|.+++.
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 56 7899999999 999999999999999999999874
No 173
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.17 E-value=1.5e-06 Score=105.26 Aligned_cols=70 Identities=16% Similarity=0.201 Sum_probs=57.2
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEE-EcCccHHHHhhcCE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTS-GLDSTSAYSVVEKVKDIARTGSIVLMT-IHQPSYRIQMLLDR 268 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPts-gLD~~~~~~i~~~L~~l~~~g~tvi~~-~H~~~~~i~~~~D~ 268 (820)
-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.......++|+++ ||++. .+.+++++
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~ 261 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFND 261 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTS
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcC
Confidence 479999999999999999999999999996 999888777777776655456777775 88775 46777774
No 174
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.16 E-value=1.5e-07 Score=98.58 Aligned_cols=52 Identities=25% Similarity=0.303 Sum_probs=35.7
Q ss_pred eEEEEEE-EEEECcccccccccccccccceeeeeEEEeC---CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 47 GLEFKNL-SYSIMKKQKKDGVWITKEAYLLHDISGQAIR---GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 47 ~L~~~nl-s~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.|+++|| +++|.+ ...+|+|+|+++.+ |+.++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~-----------~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE-----------EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC-----------cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5999999 999822 23599999999999 9999999999999999999999965
No 175
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.10 E-value=3.1e-06 Score=93.19 Aligned_cols=60 Identities=12% Similarity=0.156 Sum_probs=48.0
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEE--cCcc
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLD-EPTSGLDSTSAYSVVEKVKDIARTGSIVLMTI--HQPS 259 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllD-EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~--H~~~ 259 (820)
.+|+||+|++. +.+...++-++++| +|+.++|......+++.++.+.. +..+|++. ||..
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 58999998876 55555677789999 99999999998888888877654 67788888 7754
No 176
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.08 E-value=4.5e-07 Score=91.40 Aligned_cols=127 Identities=18% Similarity=0.268 Sum_probs=71.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSIS 166 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~ 166 (820)
+++|+|+|||||||+.++|++ + |...+++..+. +... + +.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-l------g~~~id~d~~~----~~~~----~-----~~-------------------- 43 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-L------GVPLVDADVVA----REVV----A-----KD-------------------- 43 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-T------TCCEEEHHHHH----HHTT----C-----SS--------------------
T ss_pred EEEEECCCCCCHHHHHHHHHH-C------CCcccchHHHH----HHHc----c-----CC--------------------
Confidence 689999999999999999998 2 33334322110 0000 0 00
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 003437 167 RDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR 246 (820)
Q Consensus 167 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~ 246 (820)
...+.++.+.+|... -.+.|+.+|..++..+..+|+.+.++ ++.++|.....+.+.++..
T Consensus 44 ----~~~~~~i~~~~g~~~------------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-- 103 (206)
T 1jjv_A 44 ----SPLLSKIVEHFGAQI------------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-- 103 (206)
T ss_dssp ----CHHHHHHHHHHCTTC------------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--
T ss_pred ----hHHHHHHHHHhCHHH------------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--
Confidence 012344556666431 14678889999998888888654333 3345565555555444332
Q ss_pred CCcEEEEEEcCccHH-HHhhcCEEEEEe
Q 003437 247 TGSIVLMTIHQPSYR-IQMLLDRIIVLA 273 (820)
Q Consensus 247 ~g~tvi~~~H~~~~~-i~~~~D~v~lL~ 273 (820)
.+.++|+.+|..... ....||.+++|+
T Consensus 104 ~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 104 TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 356888888876431 245788887773
No 177
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.03 E-value=2.3e-08 Score=114.84 Aligned_cols=129 Identities=17% Similarity=0.302 Sum_probs=85.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCcc---ccceEEEEccCCC-CCCCCC
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSY---MKMVSSYVMQDDQ-LFPMLT 148 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~---~~~~~gyv~Q~~~-l~~~lT 148 (820)
.+++++++.+.+| ++|+||||+|||||+++|++... .+.|.++|.++.... ..+.+..++|... ..|.+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il 127 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 127 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence 4788899999999 99999999999999999999763 488999987764321 1123446676643 455555
Q ss_pred HHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 003437 149 VFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTS 227 (820)
Q Consensus 149 V~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPts 227 (820)
+.|++......+.. .....++..+.+.+++. .|||||+|+..|+++...+|++ |||+..
T Consensus 128 ~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 128 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 55655332111100 00112333344444443 2788888898899999999987 888764
No 178
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.95 E-value=1.9e-06 Score=85.73 Aligned_cols=26 Identities=42% Similarity=0.639 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRIA 110 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~~ 110 (820)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999999874
No 179
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.95 E-value=1.4e-06 Score=94.70 Aligned_cols=76 Identities=24% Similarity=0.207 Sum_probs=55.2
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc-------cc-----cceEEEE-ccCC
Q 003437 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS-------YM-----KMVSSYV-MQDD 141 (820)
Q Consensus 75 L~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~-------~~-----~~~~gyv-~Q~~ 141 (820)
++++++.+++|++++|+|+||+||||++..|++.+.+ ..|+|.+.+.++... .+ +..+.++ +|..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 4688999999999999999999999999999998753 468999988776431 11 4457888 6654
Q ss_pred CCCCCCCHHHH
Q 003437 142 QLFPMLTVFET 152 (820)
Q Consensus 142 ~l~~~lTV~e~ 152 (820)
...|..++.++
T Consensus 173 ~~~p~~~~~~~ 183 (320)
T 1zu4_A 173 NADPASVVFDA 183 (320)
T ss_dssp TCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 44443333333
No 180
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.93 E-value=3.6e-07 Score=92.04 Aligned_cols=51 Identities=27% Similarity=0.331 Sum_probs=41.9
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEE--EECCEeCC
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSV--RIDGKPVT 126 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I--~i~G~~~~ 126 (820)
...+..++..++|++++|+||||||||||+++|++++. ..|.+ +++|.++.
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNVR 65 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHHT
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchhh
Confidence 35666777778999999999999999999999999873 34777 88876654
No 181
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.93 E-value=2.3e-05 Score=86.19 Aligned_cols=44 Identities=9% Similarity=0.074 Sum_probs=36.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCcEEEEEEcCcc
Q 003437 215 HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR---TGSIVLMTIHQPS 259 (820)
Q Consensus 215 ~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~---~g~tvi~~~H~~~ 259 (820)
.+|.+|++||+... |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888877665 5789999999985
No 182
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.93 E-value=2.1e-05 Score=86.50 Aligned_cols=57 Identities=11% Similarity=0.147 Sum_probs=39.5
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEEEc
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGS-IVLMTIH 256 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~-tvi~~~H 256 (820)
.++.++++..+++..+.+|+++++.-..+..|... ...+++++.+...|. +|++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999877774333445433 455667777765554 5555554
No 183
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.91 E-value=3.8e-06 Score=100.10 Aligned_cols=132 Identities=14% Similarity=0.087 Sum_probs=75.9
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc---cccceEEEEccCCCCCCCCCHHHHHHHH
Q 003437 80 GQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS---YMKMVSSYVMQDDQLFPMLTVFETFMFA 156 (820)
Q Consensus 80 ~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~ 156 (820)
+.+++|+.++|+|++|+|||||++.|++........|+| .+|..+... ..++.+.+.+|...+... ++..
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~----- 76 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRV----- 76 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEE-----
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEE-----
Confidence 456789999999999999999999999865433356877 566554321 112333444443322211 1000
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q 003437 157 AEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYS 236 (820)
Q Consensus 157 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~ 236 (820)
...|+. |. ..++ .......-..+.-++++| |+.|+|+.+.
T Consensus 77 ----------------------------nliDTp-G~---~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~-- 116 (665)
T 2dy1_A 77 ----------------------------FLLDAP-GY---GDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTE-- 116 (665)
T ss_dssp ----------------------------EEEECC-CS---GGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHH--
T ss_pred ----------------------------EEEeCC-Cc---cchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHH--
Confidence 111211 10 0111 112222235677889999 9999998776
Q ss_pred HHHHHHHHHhCCcEEEEEEcCccH
Q 003437 237 VVEKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 237 i~~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
+.++.+.+.+..+|++.|..+.
T Consensus 117 --~~~~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 117 --RAWTVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp --HHHHHHHHTTCCEEEEEECGGG
T ss_pred --HHHHHHHHccCCEEEEecCCch
Confidence 3334444468888999998764
No 184
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.88 E-value=5.5e-06 Score=83.16 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=24.9
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..+++|||+++.+|++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45899999999999999999999999999999999865
No 185
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.84 E-value=2.1e-06 Score=97.42 Aligned_cols=69 Identities=12% Similarity=0.308 Sum_probs=47.5
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEE-EeCCeEEEEcCc
Q 003437 215 HKPSLLFLDEPTSGLDS-TSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIV-LARGRLVYMGSP 283 (820)
Q Consensus 215 ~~P~lLllDEPtsgLD~-~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l-L~~G~iv~~G~~ 283 (820)
.+|++||+||+..-.+. .++..++..+..+.+.|+.||+++|.+..++..+.+++.- +..|.++...++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 48999999999887764 6788899999988888999999999864322222222221 234555555544
No 186
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.83 E-value=7.8e-05 Score=81.57 Aligned_cols=145 Identities=12% Similarity=0.089 Sum_probs=79.5
Q ss_pred eeeee-EEEeCCcEEEEEcCCCCcHHHHHHHHHcCC-CCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHH
Q 003437 75 LHDIS-GQAIRGEIMAIMGPSGAGKSTFLDALAGRI-AQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFET 152 (820)
Q Consensus 75 L~~vs-~~i~~Ge~~allGpnGsGKSTLl~~L~G~~-~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~ 152 (820)
|+.+- +-+++|+++.|.||+|+|||||+..++... .+....| ....+.|+.-+..+ ....-
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg-------------~~~~vlyi~~E~~~----~~~~l 173 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY-------------PGGKIIFIDTENTF----RPDRL 173 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB-------------CCCEEEEEESSSCC----CHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC-------------CCCeEEEEECCCCC----CHHHH
Confidence 44433 578999999999999999999999988752 1111001 01234455443321 22222
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH-HHHHHHHHHHh----cCCCEEEEeCCCC
Q 003437 153 FMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE-RRRVSIGIDII----HKPSLLFLDEPTS 227 (820)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe-rqRv~ia~aL~----~~P~lLllDEPts 227 (820)
......+ +.+. +++++.+-+. +..++.+ .+.+..++.++ .+++++++|+.++
T Consensus 174 ~~~~~~~----g~~~-------~~~l~~l~~~------------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 174 RDIADRF----NVDH-------DAVLDNVLYA------------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp HHHHHHT----TCCH-------HHHHHTEEEE------------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHc----CCCH-------HHHHhceeEe------------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 2222111 1221 1223322111 1123333 34555566666 5789999999998
Q ss_pred CCCHH------------HHHHHHHHHHHHHh-CCcEEEEEEcCcc
Q 003437 228 GLDST------------SAYSVVEKVKDIAR-TGSIVLMTIHQPS 259 (820)
Q Consensus 228 gLD~~------------~~~~i~~~L~~l~~-~g~tvi~~~H~~~ 259 (820)
-++.. ...+++..|+++++ .+.+||++.|-..
T Consensus 231 l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 231 LFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp GHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence 66432 13556666777765 4888888887543
No 187
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.83 E-value=1.5e-06 Score=90.96 Aligned_cols=63 Identities=21% Similarity=0.230 Sum_probs=46.1
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH---cCCCCCCCceEEE--------ECCEeCCCc----cccceEEEEc
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALA---GRIAQGSLEGSVR--------IDGKPVTTS----YMKMVSSYVM 138 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~---G~~~~~~~~G~I~--------i~G~~~~~~----~~~~~~gyv~ 138 (820)
++++.+ .+|++++|+|||||||||++++|+ |+.. +++|.|. .+|.++... ..++.+++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 93 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRF 93 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEE
Confidence 444443 789999999999999999999999 8653 4689998 889887421 2345578888
Q ss_pred cCC
Q 003437 139 QDD 141 (820)
Q Consensus 139 Q~~ 141 (820)
|++
T Consensus 94 ~~~ 96 (252)
T 4e22_A 94 VSQ 96 (252)
T ss_dssp EEE
T ss_pred ecC
Confidence 753
No 188
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.82 E-value=8.9e-06 Score=81.44 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=26.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003437 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRIA 110 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTLl~~L~G~~~ 110 (820)
++.+|++++|+||||||||||+++|++++.
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 578999999999999999999999999873
No 189
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.78 E-value=0.00016 Score=76.78 Aligned_cols=73 Identities=16% Similarity=0.247 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCcEEEEEEcCcc---HHH
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDST----------SAYSVVEKVKDIAR----TGSIVLMTIHQPS---YRI 262 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~----------~~~~i~~~L~~l~~----~g~tvi~~~H~~~---~~i 262 (820)
+++++.|..+..+...+|.+|++||+.+-++.. ....++..+..+.. .+..||.+++++. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 356777777888888899999999998876532 22234444443321 2456778888653 334
Q ss_pred HhhcCEEEEE
Q 003437 263 QMLLDRIIVL 272 (820)
Q Consensus 263 ~~~~D~v~lL 272 (820)
.+-|++.+.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 4456654433
No 190
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.76 E-value=7.2e-06 Score=84.44 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=34.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..++|++++|.|+||||||||+++|+|+ .|+|.+.+++.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 4468999999999999999999999996 48899888764
No 191
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.73 E-value=1.3e-05 Score=79.17 Aligned_cols=36 Identities=11% Similarity=0.301 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEE
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRI 120 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i 120 (820)
+|++++|+||||||||||+++|++..++ ...|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeec
Confidence 6899999999999999999999998632 23455544
No 192
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.72 E-value=2.8e-05 Score=84.07 Aligned_cols=131 Identities=15% Similarity=0.162 Sum_probs=83.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHH
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFET 152 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~ 152 (820)
.-|+++.+-+++|+++.|.|++|+|||||+.-++..... .| ..+.|+.=+ ++..+.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~---~g---------------~~vl~~slE------~s~~~l 111 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD---ND---------------DVVNLHSLE------MGKKEN 111 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT---TT---------------CEEEEEESS------SCHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cC---------------CeEEEEECC------CCHHHH
Confidence 467888777999999999999999999999888753210 11 123444321 333332
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 003437 153 FMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDST 232 (820)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~ 232 (820)
..++......+.+.+..+.. ..||.+|++|+..|...+.++++++.|+|...
T Consensus 112 ------------------~~R~~~~~~~i~~~~l~~~~------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~---- 163 (315)
T 3bh0_A 112 ------------------IKRLIVTAGSINAQKIKAAR------RDFASEDWGKLSMAIGEISNSNINIFDKAGQS---- 163 (315)
T ss_dssp ------------------HHHHHHHHTTCCHHHHHSCH------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB----
T ss_pred ------------------HHHHHHHHcCCCHHHHhcCC------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC----
Confidence 22222222222222211100 12899999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHhC-CcE--EEEEEc
Q 003437 233 SAYSVVEKVKDIART-GSI--VLMTIH 256 (820)
Q Consensus 233 ~~~~i~~~L~~l~~~-g~t--vi~~~H 256 (820)
..++...++++.++ |.. +|++-|
T Consensus 164 -~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 -VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp -HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred -HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 34566777777654 555 666655
No 193
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.71 E-value=0.00017 Score=78.17 Aligned_cols=146 Identities=15% Similarity=0.227 Sum_probs=79.9
Q ss_pred ceeeee-EEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHH
Q 003437 74 LLHDIS-GQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFET 152 (820)
Q Consensus 74 iL~~vs-~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~ 152 (820)
.|+.+- +-+++|+++.|.||+|+|||||+..++.........| | ....+.|+.-+..+ ...+-
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g-------~~~~vlyi~~e~~~----~~~~l 158 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----G-------LSGKAVYIDTEGTF----RWERI 158 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----C-------CSCEEEEEESSSCC----CHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----C-------CCCeEEEEECCCCC----CHHHH
Confidence 344442 5789999999999999999999998886431110011 1 01234455433221 12221
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH-HHHHHHHHHHHh---cCCCEEEEeCCCCC
Q 003437 153 FMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG-ERRRVSIGIDII---HKPSLLFLDEPTSG 228 (820)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG-erqRv~ia~aL~---~~P~lLllDEPtsg 228 (820)
......+ +.+.+ ++++.+ .+. +..++. +.+.+..++.++ .+|+++++|+.++-
T Consensus 159 ~~~~~~~----g~~~~-------~~~~~l--------~~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 159 ENMAKAL----GLDID-------NVMNNI--------YYI----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHHT----TCCHH-------HHHHTE--------EEE----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HHHHHHh----CCCHH-------HHhccE--------EEE----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 1111111 12211 122211 111 113333 235677777787 67999999999986
Q ss_pred CCH--------H----HHHHHHHHHHHHHh-CCcEEEEEEcCc
Q 003437 229 LDS--------T----SAYSVVEKVKDIAR-TGSIVLMTIHQP 258 (820)
Q Consensus 229 LD~--------~----~~~~i~~~L~~l~~-~g~tvi~~~H~~ 258 (820)
++. . ...+++..|+++++ .+.+||++.|-.
T Consensus 216 ~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 216 FRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp HHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred hhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 532 1 13456666666665 488888887754
No 194
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.65 E-value=1.1e-05 Score=78.78 Aligned_cols=37 Identities=30% Similarity=0.456 Sum_probs=31.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
.+|++++|+|+||||||||+++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCccc
Confidence 368999999999999999999999864 7777776554
No 195
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.57 E-value=3.6e-05 Score=77.84 Aligned_cols=28 Identities=36% Similarity=0.559 Sum_probs=26.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRIA 110 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~~ 110 (820)
++|++++|+||||||||||++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999999874
No 196
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.54 E-value=5.4e-05 Score=81.31 Aligned_cols=63 Identities=10% Similarity=0.152 Sum_probs=44.6
Q ss_pred CChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-Cc--EEEEEEcCccHHHHhhcCEE
Q 003437 199 VSGGERRRVSIGIDII--HKPSLLFLDEPTSGLDSTS-AYSVVEKVKDIART-GS--IVLMTIHQPSYRIQMLLDRI 269 (820)
Q Consensus 199 LSGGerqRv~ia~aL~--~~P~lLllDEPtsgLD~~~-~~~i~~~L~~l~~~-g~--tvi~~~H~~~~~i~~~~D~v 269 (820)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++. |. .+.++.|+-.. +..++|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~-v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN-VDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT-HHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCC-HHHHHHHH
Confidence 888886 5566666 68999998 7899876 67788888888764 43 55566666543 56666654
No 197
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.54 E-value=3.3e-05 Score=77.85 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=26.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003437 82 AIRGEIMAIMGPSGAGKSTFLDALAGRIA 110 (820)
Q Consensus 82 i~~Ge~~allGpnGsGKSTLl~~L~G~~~ 110 (820)
..+|++++|+||||||||||++.|.+..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34799999999999999999999998763
No 198
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.53 E-value=9.3e-06 Score=88.03 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=33.1
Q ss_pred ccceeeeeEEEeCCc------EEEEEcCCCCcHHHHHHHHHcCCC
Q 003437 72 AYLLHDISGQAIRGE------IMAIMGPSGAGKSTFLDALAGRIA 110 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge------~~allGpnGsGKSTLl~~L~G~~~ 110 (820)
+..|++++..+..++ ++||+||||||||||+++|++++.
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 346777777777666 999999999999999999999874
No 199
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.49 E-value=4.7e-05 Score=76.61 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=26.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+++|++++|+|+||||||||++.|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45679999999999999999999999965
No 200
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.42 E-value=2.5e-05 Score=78.55 Aligned_cols=41 Identities=22% Similarity=0.205 Sum_probs=33.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 82 AIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 82 i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
.++|++++|+|+||||||||+++|++.+.+ ..|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~--~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE--QGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhh--cCCeEEEeccC
Confidence 467999999999999999999999997632 35777765544
No 201
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.41 E-value=0.00027 Score=79.53 Aligned_cols=124 Identities=16% Similarity=0.191 Sum_probs=68.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPP 163 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~ 163 (820)
++.+++++||+|+||||++..|++.+.. ..++|.+-+.+... ....|.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~--~G~kVllv~~D~~r-------------------~~a~eqL~--------- 145 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK--RGYKVGLVAADVYR-------------------PAAYDQLL--------- 145 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECCSC-------------------HHHHHHHH---------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEecCccc-------------------hhHHHHHH---------
Confidence 5789999999999999999999987642 23455443332110 01122222
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCC-CC--CCHHHHHHHHHH
Q 003437 164 SISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPT-SG--LDSTSAYSVVEK 240 (820)
Q Consensus 164 ~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPt-sg--LD~~~~~~i~~~ 240 (820)
.+.+..|++-... . .+..--+--+-+++.+...+++++|+|+|- .+ .|+....++.++
T Consensus 146 ------------~~~~~~gv~~~~~---~----~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i 206 (433)
T 3kl4_A 146 ------------QLGNQIGVQVYGE---P----NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEM 206 (433)
T ss_dssp ------------HHHHTTTCCEECC---T----TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHH
T ss_pred ------------HHHHhcCCceeec---c----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHH
Confidence 2223334432110 0 011111222334555555689999999987 34 788777777776
Q ss_pred HHHHHhCCcEEEEEEc
Q 003437 241 VKDIARTGSIVLMTIH 256 (820)
Q Consensus 241 L~~l~~~g~tvi~~~H 256 (820)
++.+......+++..|
T Consensus 207 ~~~~~pd~vlLVlDa~ 222 (433)
T 3kl4_A 207 YDVLKPDDVILVIDAS 222 (433)
T ss_dssp HHHHCCSEEEEEEEGG
T ss_pred HHhhCCcceEEEEeCc
Confidence 6555433444444444
No 202
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.40 E-value=4.6e-05 Score=74.05 Aligned_cols=26 Identities=38% Similarity=0.560 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.|++++|+||||||||||+++|++.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46889999999999999999999976
No 203
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.40 E-value=4.4e-05 Score=83.50 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++..+.|.||+|+|||||++.+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999865
No 204
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.36 E-value=0.0011 Score=74.91 Aligned_cols=154 Identities=16% Similarity=0.200 Sum_probs=85.8
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHH
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFET 152 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~ 152 (820)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++...... .| ..+.|+.=+ ++..+.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g---------------~~vl~~slE------~~~~~l 244 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK--EG---------------VGVGIYSLE------MPAAQL 244 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--TC---------------CCEEEEESS------SCHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CC---------------CeEEEEECC------CCHHHH
Confidence 4577777779999999999999999999998887643110 11 012222211 222221
Q ss_pred HHH--HHHhcCC------CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHh--cCCCEEEE
Q 003437 153 FMF--AAEVRLP------PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDII--HKPSLLFL 222 (820)
Q Consensus 153 l~~--~~~~~~~------~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~--~~P~lLll 222 (820)
..- +.....+ ..++.++ .+++.+.++.+.-.+ -.+.+ ..++|..+. .+.++.+. .+|+++++
T Consensus 245 ~~R~~~~~~~i~~~~l~~g~l~~~~-~~~~~~a~~~l~~~~---l~i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIvI 316 (444)
T 2q6t_A 245 TLRMMCSEARIDMNRVRLGQLTDRD-FSRLVDVASRLSEAP---IYIDD--TPDLTLMEV--RARARRLVSQNQVGLIII 316 (444)
T ss_dssp HHHHHHHHTTCCTTTCCGGGCCHHH-HHHHHHHHHHHHTSC---EEEEC--CTTCBHHHH--HHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHcCCCHHHHhCCCCCHHH-HHHHHHHHHHHhcCC---EEEEC--CCCCCHHHH--HHHHHHHHHHcCCCEEEE
Confidence 110 0000000 0123333 233444444442211 11211 124777665 34455555 58999999
Q ss_pred eCCCCCCCH----------HHHHHHHHHHHHHHhC-CcEEEEEEcC
Q 003437 223 DEPTSGLDS----------TSAYSVVEKVKDIART-GSIVLMTIHQ 257 (820)
Q Consensus 223 DEPtsgLD~----------~~~~~i~~~L~~l~~~-g~tvi~~~H~ 257 (820)
|..+.-.+. ....++.+.|+.++++ +.+||+++|-
T Consensus 317 D~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql 362 (444)
T 2q6t_A 317 DYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQL 362 (444)
T ss_dssp ECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred cChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 999764432 1235677888888875 8999999883
No 205
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.32 E-value=0.00031 Score=75.14 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=26.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+.++..+.|.||+|+|||||+++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35788999999999999999999999865
No 206
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.29 E-value=4.9e-05 Score=88.25 Aligned_cols=43 Identities=42% Similarity=0.605 Sum_probs=35.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCce-EEE-ECCEeC
Q 003437 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEG-SVR-IDGKPV 125 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G-~I~-i~G~~~ 125 (820)
.+++|++++|+|+||||||||+++|+|++.+ .+| +|. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcHH
Confidence 4679999999999999999999999998743 344 674 887654
No 207
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.21 E-value=0.00017 Score=69.25 Aligned_cols=31 Identities=39% Similarity=0.548 Sum_probs=25.6
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 003437 76 HDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 76 ~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G 107 (820)
++.++.+.+| +.+|+|||||||||++++|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4455666665 999999999999999999874
No 208
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.16 E-value=0.00056 Score=70.27 Aligned_cols=66 Identities=18% Similarity=0.061 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcC
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTS-GLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLD 267 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPts-gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 267 (820)
+.|...+.. ...+.+-+++++||.-. ++|.......++.+.....+-++++++..-+...+.++++
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 446655553 33578999999999976 6887766555555544433345666665555444555554
No 209
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.16 E-value=0.00024 Score=86.40 Aligned_cols=30 Identities=23% Similarity=0.311 Sum_probs=27.7
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 80 GQAIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 80 ~~i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+.+++|+.++|+||||+|||||+++|++.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 367899999999999999999999999976
No 210
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.10 E-value=0.0062 Score=66.78 Aligned_cols=35 Identities=29% Similarity=0.375 Sum_probs=28.6
Q ss_pred ceeeee--EEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 74 LLHDIS--GQAIRGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 74 iL~~vs--~~i~~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
-|+.+- +-+++|+++.|.|++|+|||||...++..
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 455543 35889999999999999999999887753
No 211
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.05 E-value=0.0005 Score=77.70 Aligned_cols=39 Identities=31% Similarity=0.530 Sum_probs=31.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC----------CCCCceEEEECCEeC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRIA----------QGSLEGSVRIDGKPV 125 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~~----------~~~~~G~I~i~G~~~ 125 (820)
.++|+|+||+|||||+|.|+|... ..+..|.+.++|+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 799999999999999999999752 013568999999764
No 212
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.01 E-value=0.0049 Score=63.14 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=28.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCcEEEEEEcC
Q 003437 215 HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR--TGSIVLMTIHQ 257 (820)
Q Consensus 215 ~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~--~g~tvi~~~H~ 257 (820)
.+|+++|+..+.+.++......+..+++.+.. ...++|+.+|-
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 47899999999888888665555444443322 13577888874
No 213
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.95 E-value=9e-05 Score=81.51 Aligned_cols=33 Identities=33% Similarity=0.507 Sum_probs=31.5
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 77 DISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 77 ~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
|+.+.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999865
No 214
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.92 E-value=0.00076 Score=65.50 Aligned_cols=27 Identities=48% Similarity=0.671 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999864
No 215
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.91 E-value=8.1e-05 Score=81.36 Aligned_cols=50 Identities=28% Similarity=0.274 Sum_probs=40.9
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
.+++++++.+.+|.+++|+|++|+|||||++.|++.+.+ ..|+|.+-+.+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~--~~~~v~v~~~d 93 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR--EGLKVAVIAVD 93 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEEEC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHh--cCCeEEEEeec
Confidence 478889998999999999999999999999999997632 34666654444
No 216
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.89 E-value=0.0018 Score=69.57 Aligned_cols=46 Identities=9% Similarity=0.114 Sum_probs=35.4
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEEcCcc
Q 003437 214 IHKPSLLFLDEPTS-GLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259 (820)
Q Consensus 214 ~~~P~lLllDEPts-gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 259 (820)
..++.+|++||+.. ..|......+...+..+.+.|..+|++++.+.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 35699999999866 23447788899999888777777888887553
No 217
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.88 E-value=0.0015 Score=68.70 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++.-+.|.||+|+|||||+++|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 466779999999999999999999864
No 218
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.86 E-value=0.00017 Score=83.77 Aligned_cols=48 Identities=19% Similarity=0.469 Sum_probs=39.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCE
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK 123 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~ 123 (820)
.+++++++.+ +|+.++|+||||+|||||+++|++.+. +..|.|.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 3677778777 899999999999999999999999874 34577777664
No 219
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.81 E-value=0.00049 Score=70.79 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=26.9
Q ss_pred ceeeeeEEEe---CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003437 74 LLHDISGQAI---RGEIMAIMGPSGAGKSTFLDALAGRIA 110 (820)
Q Consensus 74 iL~~vs~~i~---~Ge~~allGpnGsGKSTLl~~L~G~~~ 110 (820)
-|.++++++. +|.+++|.|++||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4677777776 899999999999999999999999763
No 220
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.79 E-value=0.0018 Score=66.30 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=42.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEc---------CccHHHHhhcCEEEEEe
Q 003437 216 KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIH---------QPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 216 ~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H---------~~~~~i~~~~D~v~lL~ 273 (820)
+++++++||--. |+. ++++.++.+++.|..||++-| .....+..++|+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 654 366677777777999999999 55667788999998875
No 221
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.77 E-value=0.0014 Score=65.23 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..+.|.||+|+|||||+++|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999854
No 222
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.77 E-value=0.0011 Score=65.33 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=21.1
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999998887 6799999999999999999984
No 223
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.74 E-value=0.00034 Score=76.66 Aligned_cols=41 Identities=22% Similarity=0.317 Sum_probs=32.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
+++.+++|+|++|||||||+|.|+|.+.+ ..|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~--~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE--RGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh--cCCeEEEEeecC
Confidence 35789999999999999999999997632 357777766554
No 224
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.74 E-value=0.00073 Score=68.13 Aligned_cols=33 Identities=36% Similarity=0.533 Sum_probs=26.3
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 76 HDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 76 ~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+.++.+.+| +++|+|||||||||++++|.-.+
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 3455666665 99999999999999999986443
No 225
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.74 E-value=0.0026 Score=71.95 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=30.0
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
.-|+.+.+-+++|+++.|.|++|+|||||+--++..
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 356666667899999999999999999998777653
No 226
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.71 E-value=0.00076 Score=65.97 Aligned_cols=40 Identities=35% Similarity=0.514 Sum_probs=30.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCce--EEEECCEeC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEG--SVRIDGKPV 125 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G--~I~i~G~~~ 125 (820)
++|++++|+|++||||||+++.|++.+.+ .| .|.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~---~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC---HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh---CCCcEEEECChHH
Confidence 46999999999999999999999997632 24 555555443
No 227
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.70 E-value=0.00074 Score=68.43 Aligned_cols=56 Identities=23% Similarity=0.280 Sum_probs=38.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCceEEEE--------CCEeCCCc----cccceEEEEccC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRIA-QGSLEGSVRI--------DGKPVTTS----YMKMVSSYVMQD 140 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~~-~~~~~G~I~i--------~G~~~~~~----~~~~~~gyv~Q~ 140 (820)
+.+++|+|||||||||++++|++.+. +..+.|++.. +|.++... ..++.+++++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 56899999999999999999998641 1235677766 56655421 123445667665
No 228
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.67 E-value=0.00085 Score=67.99 Aligned_cols=44 Identities=7% Similarity=0.111 Sum_probs=31.1
Q ss_pred cCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcE-EEEEEcCc
Q 003437 215 HKPSLLFLDEPTSGL-DSTSAYSVVEKVKDIARTGSI-VLMTIHQP 258 (820)
Q Consensus 215 ~~P~lLllDEPtsgL-D~~~~~~i~~~L~~l~~~g~t-vi~~~H~~ 258 (820)
.+|.+|++||...-- +......+.+.+..+...+.. +|++++..
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 568999999965532 233377788888887766655 77777754
No 229
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.64 E-value=6.3e-05 Score=82.96 Aligned_cols=45 Identities=24% Similarity=0.310 Sum_probs=32.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+.++||+..+.+ +.+++++++.| +|+|++|+|||||++.|.|..
T Consensus 17 ~v~~~~l~~~~~~------------k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 17 YVGFANLPNQVHR------------KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp ----CCHHHHHHT------------HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eEEeccchHHhCC------------eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 3667777655432 34788888877 999999999999999998864
No 230
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.62 E-value=0.0053 Score=66.09 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=28.4
Q ss_pred ceeeee-EEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 003437 74 LLHDIS-GQAIRGEIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 74 iL~~vs-~~i~~Ge~~allGpnGsGKSTLl~~L~G 107 (820)
-|+.+- +-+++|+++.|.||+|+|||||+..++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444443 5789999999999999999999988875
No 231
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.59 E-value=0.0009 Score=67.08 Aligned_cols=28 Identities=29% Similarity=0.522 Sum_probs=25.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 82 AIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 82 i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..+|.+++|+||||||||||.+.|+..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4579999999999999999999999865
No 232
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.57 E-value=0.011 Score=64.62 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+..-+.|.||+|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999854
No 233
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.57 E-value=0.00091 Score=65.97 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=26.3
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 77 DISGQAIRGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 77 ~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46777788999999999999999999999975
No 234
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.53 E-value=0.0026 Score=60.97 Aligned_cols=23 Identities=39% Similarity=0.652 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999954
No 235
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.52 E-value=0.00054 Score=68.22 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=30.7
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
.+++++|+..++++ ++|+|++|+|||||++.+.+-
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 48899998888874 789999999999999999873
No 236
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.49 E-value=0.00062 Score=68.65 Aligned_cols=42 Identities=29% Similarity=0.393 Sum_probs=33.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCce--EEEECCEe
Q 003437 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEG--SVRIDGKP 124 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G--~I~i~G~~ 124 (820)
.+++|.+++|+|++||||||+.+.|++.+. +..| .+.++|..
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~--~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLV--RDRRVHAYRLDGDN 64 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCCCEEEECHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhc--cccCCcEEEECChH
Confidence 356799999999999999999999999763 1346 77776543
No 237
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.46 E-value=0.0026 Score=70.08 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=27.9
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALA 106 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~ 106 (820)
.+++..+.+.+| +++|.|||||||||+|.+|.
T Consensus 15 ~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 15 SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 357778888776 99999999999999999986
No 238
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.44 E-value=0.0091 Score=61.54 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+..-+.|.||+|+|||||++.|+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44568899999999999999999854
No 239
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.39 E-value=0.0014 Score=65.39 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 003437 87 IMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G 107 (820)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 240
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.31 E-value=0.00083 Score=67.06 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..+++|+|++|||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999864
No 241
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.20 E-value=0.0033 Score=61.11 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 242
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.19 E-value=0.00059 Score=74.56 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=33.9
Q ss_pred cceeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHHcCC
Q 003437 73 YLLHDISGQAIRGEI--MAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~--~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 378888888999998 9999999999999999999975
No 243
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.18 E-value=0.048 Score=58.67 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+..-+.|.||+|+|||||++.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 456789999999999999999999854
No 244
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.15 E-value=0.055 Score=59.44 Aligned_cols=34 Identities=35% Similarity=0.474 Sum_probs=27.3
Q ss_pred ceeeee--EEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 003437 74 LLHDIS--GQAIRGEIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 74 iL~~vs--~~i~~Ge~~allGpnGsGKSTLl~~L~G 107 (820)
-|+.+- +-+++|+++.|.||+|+|||||+..++.
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 344433 3689999999999999999999977764
No 245
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.14 E-value=0.047 Score=62.49 Aligned_cols=35 Identities=29% Similarity=0.236 Sum_probs=29.0
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G 107 (820)
.-|+.+.+-+.+|+++.|.|++|+|||||+--++-
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 35666655689999999999999999999876664
No 246
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.13 E-value=0.014 Score=75.25 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=26.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-+++|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 59999999999999999999999988743
No 247
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.13 E-value=0.0014 Score=73.67 Aligned_cols=47 Identities=15% Similarity=0.036 Sum_probs=39.1
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 76 HDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 76 ~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
+++++. +|++++++|+||+||||++..|++.+.+ ..|+|.+.+.++.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~--~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQ 137 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECCSS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEeecccc
Confidence 567777 8999999999999999999999998753 3588888776653
No 248
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.11 E-value=0.0014 Score=68.22 Aligned_cols=41 Identities=27% Similarity=0.315 Sum_probs=32.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..+++.++.|+|+|||||||+.+.|+..+. .+.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~----~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ----GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT----TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC----CCcEEEecHHH
Confidence 456788999999999999999999998762 25567776543
No 249
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.10 E-value=0.0028 Score=62.32 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=25.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999999876
No 250
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.08 E-value=0.0042 Score=67.62 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999754
No 251
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.07 E-value=0.0031 Score=62.00 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC-CCCceEEEECCE
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRIAQ-GSLEGSVRIDGK 123 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~~~-~~~~G~I~i~G~ 123 (820)
.+++|+|+||||||||++.|.+.+.. +..-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 58999999999999999999986532 122366666553
No 252
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.04 E-value=0.0028 Score=61.96 Aligned_cols=26 Identities=38% Similarity=0.571 Sum_probs=22.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999864
No 253
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.92 E-value=0.0042 Score=60.22 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
|.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999865
No 254
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.91 E-value=0.0039 Score=59.86 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999754
No 255
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.89 E-value=0.0009 Score=72.64 Aligned_cols=38 Identities=26% Similarity=0.481 Sum_probs=34.3
Q ss_pred ccceeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHHcCC
Q 003437 72 AYLLHDISGQAIRGEI--MAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~--~allGpnGsGKSTLl~~L~G~~ 109 (820)
..+++.++..++.|++ +.+.||+|+|||||++++++.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3478888888999998 9999999999999999999976
No 256
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.79 E-value=0.0046 Score=63.41 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=24.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 82 AIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 82 i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-.+|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3568999999999999999999999854
No 257
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.76 E-value=0.0039 Score=69.25 Aligned_cols=43 Identities=26% Similarity=0.315 Sum_probs=32.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCC---------CCCCceEEEECCE
Q 003437 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRIA---------QGSLEGSVRIDGK 123 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTLl~~L~G~~~---------~~~~~G~I~i~G~ 123 (820)
.+..|..++|+|+||+|||||+|+|+|... ..+..|.|.+.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 456788999999999999999999999721 1245688887764
No 258
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.76 E-value=0.0032 Score=65.22 Aligned_cols=33 Identities=30% Similarity=0.730 Sum_probs=23.6
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 75 L~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++++++...+| +.|.||+|+|||||+++|++..
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 44444444444 8999999999999999999865
No 259
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.68 E-value=0.0046 Score=60.36 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999853
No 260
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.68 E-value=0.0012 Score=70.79 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=35.5
Q ss_pred ee-eeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 76 HD-ISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 76 ~~-vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
++ +++..+ |++++++|++|+||||++..|++.+.. ..|+|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~--~g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK--KGFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEecC
Confidence 45 667665 999999999999999999999997742 24666665444
No 261
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.67 E-value=0.0058 Score=59.67 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
|.+++|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998754
No 262
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.57 E-value=0.006 Score=62.43 Aligned_cols=73 Identities=15% Similarity=0.182 Sum_probs=43.5
Q ss_pred HhcCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEEEc-----Ccc----------------HHHHhhcCEEE
Q 003437 213 IIHKPSLLFLDEPTSG-LDSTSAYSVVEKVKDIARTGSIVLMTIH-----QPS----------------YRIQMLLDRII 270 (820)
Q Consensus 213 L~~~P~lLllDEPtsg-LD~~~~~~i~~~L~~l~~~g~tvi~~~H-----~~~----------------~~i~~~~D~v~ 270 (820)
|..+|+++++||+-.- .+.......++.+..+...|..++.++| ... ..+++.+|.|.
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v~ 160 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDLV 160 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEEE
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeEE
Confidence 4468999999997642 3322223333344445567889999998 111 12445566666
Q ss_pred EEeCCeEEEEcCccchhhhhhc
Q 003437 271 VLARGRLVYMGSPVALPAHLAG 292 (820)
Q Consensus 271 lL~~G~iv~~G~~~~~~~~f~~ 292 (820)
++ +-+|+++.+.+..
T Consensus 161 lv-------D~~p~~l~~rl~~ 175 (228)
T 2r8r_A 161 LI-------DLPPRELLERLRD 175 (228)
T ss_dssp EB-------CCCHHHHHHHHHT
T ss_pred Ee-------cCCHHHHHHHHHC
Confidence 64 3467777766654
No 263
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.56 E-value=0.0062 Score=62.78 Aligned_cols=25 Identities=36% Similarity=0.622 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999754
No 264
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.51 E-value=0.0058 Score=59.91 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 57799999999999999999998643
No 265
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.46 E-value=0.0065 Score=63.25 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+++|+||||||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999854
No 266
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.42 E-value=0.0073 Score=57.67 Aligned_cols=19 Identities=42% Similarity=0.721 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 003437 87 IMAIMGPSGAGKSTFLDAL 105 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L 105 (820)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 267
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.37 E-value=0.0085 Score=58.49 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998754
No 268
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.33 E-value=0.0078 Score=59.82 Aligned_cols=23 Identities=48% Similarity=0.706 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999987654
No 269
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.33 E-value=0.01 Score=63.78 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=22.0
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHH-HHHHc
Q 003437 80 GQAIRGEIMAIMGPSGAGKSTFL-DALAG 107 (820)
Q Consensus 80 ~~i~~Ge~~allGpnGsGKSTLl-~~L~G 107 (820)
+=+.+| ++.|.||+|+|||||+ .+++.
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 457889 9999999999999995 44444
No 270
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.29 E-value=0.096 Score=57.70 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++.-+.|.||+|+|||+|.++|+...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999999854
No 271
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.29 E-value=0.0088 Score=60.24 Aligned_cols=23 Identities=43% Similarity=0.579 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G 107 (820)
+-+++|.|++||||||+.+.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999997
No 272
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.26 E-value=0.015 Score=58.04 Aligned_cols=53 Identities=21% Similarity=0.289 Sum_probs=40.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEc---------CccHHHHhhcCEEEEEe
Q 003437 216 KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIH---------QPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 216 ~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H---------~~~~~i~~~~D~v~lL~ 273 (820)
+.+++++||--- ||+. +++.|+.++..|..||++-+ .++..+..++|.|.-|.
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 478999999544 6643 36678888878999999999 45567888999987764
No 273
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.25 E-value=0.0085 Score=58.34 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
.+..+.|.|++||||||+.+.|+-.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999854
No 274
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.25 E-value=0.0092 Score=58.88 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999865
No 275
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.22 E-value=0.01 Score=58.67 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999855
No 276
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.098 Score=58.04 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=22.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+-.=+.|.||+|+|||+|.++|++..
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 333448899999999999999999854
No 277
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.20 E-value=0.01 Score=58.88 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999865
No 278
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.17 E-value=0.01 Score=57.29 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 003437 86 EIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G 107 (820)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 279
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.08 E-value=0.011 Score=58.80 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+|.+++|.|++||||||+.+.|+-.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999998653
No 280
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.08 E-value=0.01 Score=57.47 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999754
No 281
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.08 E-value=0.19 Score=65.08 Aligned_cols=153 Identities=14% Similarity=0.211 Sum_probs=86.8
Q ss_pred ceeeee--EEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 74 LLHDIS--GQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 74 iL~~vs--~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
-|+.+- +=+++|+++.|.||+|+|||||+--++..... .| ..+.|+.-+...- +
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~---~G---------------~~vlyis~E~s~~------~ 425 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR---EG---------------KTCAFIDAEHALD------P 425 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH---TT---------------CCEEEECTTSCCC------H
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---hC---------------CCeEEEEccCchH------H
Confidence 466654 36899999999999999999998777653210 01 1234554332211 0
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHh--cCCCEEEEeCCCCCC
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDII--HKPSLLFLDEPTSGL 229 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~--~~P~lLllDEPtsgL 229 (820)
+. .+.+|+.. .+-.+-+ .-++.| -+.+++.++ .+|+++++|..++=.
T Consensus 426 -~~-----------------------a~~lGvd~-~~L~i~~----~~~~e~--~l~~l~~lv~~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 426 -IY-----------------------ARKLGVDI-DNLLCSQ----PDTGEQ--ALEICDALARSGAVDVIVVDSVAALT 474 (1706)
T ss_dssp -HH-----------------------HHHTTCCG-GGCEEEC----CSSHHH--HHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred -HH-----------------------HHHcCCCH-HHeEEcC----CCCHHH--HHHHHHHHHHhcCCCEEEECCHHHhh
Confidence 00 11222211 0001111 113333 234455554 579999999998866
Q ss_pred CH-------------HHHHHHHHHHHHH---Hh-CCcEEEEEEcCcc---------------HHHHhhcCEEEEEeCCeE
Q 003437 230 DS-------------TSAYSVVEKVKDI---AR-TGSIVLMTIHQPS---------------YRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 230 D~-------------~~~~~i~~~L~~l---~~-~g~tvi~~~H~~~---------------~~i~~~~D~v~lL~~G~i 277 (820)
.. ...+.+.+.+++| ++ .|.+||++.|-.. ..+..++|-++.|.+.+.
T Consensus 475 ~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~ 554 (1706)
T 3cmw_A 475 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 554 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEeccc
Confidence 41 1223445555555 33 5999999987421 246678999888887655
Q ss_pred EEEc
Q 003437 278 VYMG 281 (820)
Q Consensus 278 v~~G 281 (820)
+..|
T Consensus 555 ~~~g 558 (1706)
T 3cmw_A 555 VKEG 558 (1706)
T ss_dssp EEET
T ss_pred cccC
Confidence 4444
No 282
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.07 E-value=0.053 Score=59.20 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+..-+.|.||+|+|||||.++|+...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455568999999999999999999854
No 283
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.01 E-value=0.024 Score=55.40 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999766654
No 284
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.00 E-value=0.012 Score=57.68 Aligned_cols=26 Identities=23% Similarity=0.505 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 57799999999999999999998643
No 285
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.99 E-value=0.01 Score=62.98 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDG 122 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G 122 (820)
.|.++.|.||||||||||.+.|+..+. .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~----~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ----GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT----TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC----CCeEEEec
Confidence 467999999999999999999987542 25566665
No 286
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.97 E-value=0.058 Score=70.67 Aligned_cols=153 Identities=16% Similarity=0.253 Sum_probs=86.3
Q ss_pred ceeeee--EEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 74 LLHDIS--GQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 74 iL~~vs--~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
-|+.+- +=+++|+++.|.||+|+|||||+.-++..... .| ..+.|+.-+...-+ ++
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~---~G---------------~~vlyis~E~s~~~---~~- 427 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR---EG---------------KTCAFIDAEHALDP---IY- 427 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT---TT---------------CCEEEECTTSCCCH---HH-
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHh---cC---------------CeEEEEEcCCCHHH---HH-
Confidence 455554 35899999999999999999998777653311 11 12234332221100 00
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHh--cCCCEEEEeCCCCCC
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDII--HKPSLLFLDEPTSGL 229 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~--~~P~lLllDEPtsgL 229 (820)
+ +.+|+.. .+-.+-+ ..+.. +-+.+++.++ .+|+++++|.-++-.
T Consensus 428 ----a----------------------~~lGvd~-~~L~I~~----~~~~e--~il~~~~~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 428 ----A----------------------RKLGVDI-DNLLCSQ----PDTGE--QALEICDALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp ----H----------------------HHTTCCT-TTCEEEC----CSSHH--HHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ----H----------------------HHcCCCH-HHeEEeC----CCCHH--HHHHHHHHHHHhcCCcEEEECCHHHhh
Confidence 1 1122210 0111211 12332 3445666664 479999999988755
Q ss_pred C-H------------HHHHHHHHHHHHH---Hh-CCcEEEEEEcCccH---------------HHHhhcCEEEEEeCCeE
Q 003437 230 D-S------------TSAYSVVEKVKDI---AR-TGSIVLMTIHQPSY---------------RIQMLLDRIIVLARGRL 277 (820)
Q Consensus 230 D-~------------~~~~~i~~~L~~l---~~-~g~tvi~~~H~~~~---------------~i~~~~D~v~lL~~G~i 277 (820)
. . ..++.+.+.|++| ++ .|.+||++.|-... .+...+|-++.|++...
T Consensus 475 ~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~~ 554 (2050)
T 3cmu_A 475 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 554 (2050)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEeccc
Confidence 2 1 1234456666666 44 58899998874221 35667899999887654
Q ss_pred EEEc
Q 003437 278 VYMG 281 (820)
Q Consensus 278 v~~G 281 (820)
...|
T Consensus 555 ~~~g 558 (2050)
T 3cmu_A 555 VKEG 558 (2050)
T ss_dssp EEET
T ss_pred ccCC
Confidence 4433
No 287
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.94 E-value=0.0064 Score=60.74 Aligned_cols=23 Identities=43% Similarity=0.787 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+++|.|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999865
No 288
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.91 E-value=0.013 Score=58.36 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999654
No 289
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.87 E-value=0.013 Score=57.77 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999973
No 290
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.86 E-value=0.014 Score=56.91 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
+.+++|.|++||||||+.+.|+-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999864
No 291
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.86 E-value=0.013 Score=57.16 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++.|.|++||||||+.+.|+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 292
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.84 E-value=0.012 Score=61.70 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 293
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.80 E-value=0.055 Score=54.81 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=42.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEc---------CccHHHHhhcCEEEEEe
Q 003437 216 KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIH---------QPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 216 ~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H---------~~~~~i~~~~D~v~lL~ 273 (820)
+.+++++||--- ||.. +++.|+.++..|+.||++-+ .+...+..++|.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 578999999876 6643 34778888778999999999 67777888999988774
No 294
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.74 E-value=0.041 Score=51.66 Aligned_cols=42 Identities=7% Similarity=0.103 Sum_probs=29.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCc
Q 003437 216 KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQP 258 (820)
Q Consensus 216 ~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 258 (820)
+..+|++||.- .|+...+..+.+.+.+....+..+|++++.+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 35689999975 6788888888887776543456677777654
No 295
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.71 E-value=0.046 Score=61.76 Aligned_cols=54 Identities=9% Similarity=0.084 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCcc
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEP-TSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEP-tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 259 (820)
.+.+....+...+.+++++|+... +.++.... ..+.+.|+ +.++.+|++.+..+
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK~D 142 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNKLD 142 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEECC-
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEECcc
Confidence 366666677777788887655544 44555543 44555544 35788888887654
No 296
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.65 E-value=0.017 Score=56.56 Aligned_cols=24 Identities=17% Similarity=0.421 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+++|+|++|||||||++.|+..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 378999999999999999998865
No 297
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.65 E-value=0.018 Score=58.00 Aligned_cols=26 Identities=38% Similarity=0.585 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+|-.+.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998754
No 298
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.60 E-value=0.014 Score=57.41 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999998754
No 299
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.56 E-value=0.013 Score=56.84 Aligned_cols=26 Identities=38% Similarity=0.589 Sum_probs=18.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998654
No 300
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.54 E-value=0.016 Score=56.43 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-.++|+|++|+|||||++.|.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999854
No 301
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.51 E-value=0.017 Score=54.50 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999853
No 302
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.51 E-value=0.029 Score=61.54 Aligned_cols=38 Identities=29% Similarity=0.332 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC---------CCCCCceEEEECC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI---------AQGSLEGSVRIDG 122 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~---------~~~~~~G~I~i~G 122 (820)
|-.++|+|.+|+|||||++.|+|.. ...+..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 3468999999999999999999843 1124568887766
No 303
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.47 E-value=0.019 Score=56.27 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 304
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.46 E-value=0.019 Score=54.62 Aligned_cols=23 Identities=26% Similarity=0.618 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47999999999999999999853
No 305
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.43 E-value=0.02 Score=54.17 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999984
No 306
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.41 E-value=0.019 Score=56.83 Aligned_cols=23 Identities=39% Similarity=0.632 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999854
No 307
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.37 E-value=0.016 Score=54.75 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47899999999999999998754
No 308
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.36 E-value=0.021 Score=57.93 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++.+++|.|++||||||+.+.|+..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999999644
No 309
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.36 E-value=0.02 Score=53.81 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 310
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.34 E-value=0.02 Score=53.69 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999853
No 311
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.31 E-value=0.019 Score=53.81 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999998854
No 312
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.31 E-value=0.02 Score=53.80 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999999753
No 313
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.29 E-value=0.022 Score=53.97 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 37899999999999999998753
No 314
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.27 E-value=0.025 Score=56.01 Aligned_cols=26 Identities=35% Similarity=0.518 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+-+++|.|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998743
No 315
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.25 E-value=0.03 Score=60.10 Aligned_cols=36 Identities=33% Similarity=0.305 Sum_probs=31.2
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
...+++....+ .|.-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 35788877777 8999999999999999999999873
No 316
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.23 E-value=0.022 Score=53.90 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999864
No 317
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.22 E-value=0.023 Score=56.87 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
No 318
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.20 E-value=0.022 Score=53.91 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999753
No 319
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.17 E-value=0.022 Score=53.71 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 320
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.16 E-value=0.021 Score=54.00 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37999999999999999999853
No 321
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.14 E-value=0.021 Score=54.62 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998853
No 322
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.14 E-value=0.023 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
No 323
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.13 E-value=0.025 Score=59.56 Aligned_cols=23 Identities=22% Similarity=0.590 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999953
No 324
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.13 E-value=0.023 Score=54.25 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 325
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.11 E-value=0.023 Score=58.67 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.|..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57999999999999999999964
No 326
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.11 E-value=0.024 Score=54.30 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998854
No 327
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.10 E-value=0.026 Score=55.10 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 328
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.10 E-value=0.028 Score=53.97 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
=+.++|.|+.||||||+.+.|+..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998754
No 329
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.07 E-value=0.023 Score=54.55 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998754
No 330
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.06 E-value=0.022 Score=55.52 Aligned_cols=23 Identities=39% Similarity=0.683 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~ 108 (820)
-.++|+|++|+|||||++.|.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999985
No 331
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.04 E-value=0.02 Score=55.57 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 332
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.03 E-value=0.027 Score=56.47 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998643
No 333
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.01 E-value=0.032 Score=53.33 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.-.++|+|++|+|||||++.+.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4578999999999999999998843
No 334
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.01 E-value=0.024 Score=54.24 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999853
No 335
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.01 E-value=0.023 Score=57.34 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+.++.|+|++||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999998744
No 336
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.96 E-value=0.024 Score=55.23 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998754
No 337
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.95 E-value=0.03 Score=53.50 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998743
No 338
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.95 E-value=0.024 Score=55.00 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999999854
No 339
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.94 E-value=0.029 Score=55.59 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998643
No 340
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.93 E-value=0.03 Score=58.24 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999975
No 341
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.90 E-value=0.027 Score=53.11 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999743
No 342
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.89 E-value=0.027 Score=54.76 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|+.|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999864
No 343
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.88 E-value=0.029 Score=54.55 Aligned_cols=25 Identities=20% Similarity=0.419 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..+++|.|++||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998643
No 344
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.88 E-value=0.027 Score=54.27 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999999854
No 345
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.86 E-value=0.026 Score=54.63 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999999853
No 346
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.85 E-value=0.03 Score=53.45 Aligned_cols=23 Identities=17% Similarity=0.457 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47999999999999999999753
No 347
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.81 E-value=0.029 Score=53.18 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 348
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.81 E-value=0.45 Score=53.42 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++.+++++|++|+||||++..|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999765
No 349
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.78 E-value=0.029 Score=54.75 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 350
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.77 E-value=0.029 Score=54.22 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999743
No 351
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.75 E-value=0.03 Score=52.72 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003437 88 MAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~ 108 (820)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999874
No 352
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.70 E-value=0.035 Score=57.22 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
++-.++|.||+||||||+.+.|+-.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999864
No 353
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.69 E-value=0.024 Score=62.68 Aligned_cols=36 Identities=28% Similarity=0.147 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEEC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRID 121 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~ 121 (820)
.+..++|+||||||||||++.|++.... ..+.|.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~--~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM--QGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH--CCCEEEEE
Confidence 5678999999999999999999986532 34666653
No 354
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.64 E-value=0.03 Score=53.41 Aligned_cols=23 Identities=13% Similarity=0.343 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
No 355
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.63 E-value=0.2 Score=51.26 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=43.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC---------ccHHHHhhcCEEEEEe
Q 003437 215 HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQ---------PSYRIQMLLDRIIVLA 273 (820)
Q Consensus 215 ~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~---------~~~~i~~~~D~v~lL~ 273 (820)
.+.+++++||----.| +.++++.+++.|+.||++-++ +...+..++|.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999987754 666666667789999999999 7777888899988774
No 356
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.61 E-value=0.032 Score=53.56 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999999999999999999753
No 357
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.60 E-value=0.033 Score=53.36 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998854
No 358
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.58 E-value=0.033 Score=53.08 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999999854
No 359
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.56 E-value=0.033 Score=54.05 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.|..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47999999999999999999865
No 360
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.56 E-value=0.021 Score=55.03 Aligned_cols=22 Identities=41% Similarity=0.477 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 003437 86 EIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G 107 (820)
-.++|+|++|+|||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999875
No 361
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.55 E-value=0.036 Score=59.23 Aligned_cols=23 Identities=43% Similarity=0.655 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 59999999999999999999864
No 362
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.54 E-value=0.036 Score=57.25 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
No 363
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.50 E-value=0.034 Score=53.97 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999854
No 364
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.50 E-value=0.035 Score=53.17 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999854
No 365
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.44 E-value=0.055 Score=54.21 Aligned_cols=34 Identities=35% Similarity=0.372 Sum_probs=27.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++..-.. ..|..++|+||+|+|||||...|+.+
T Consensus 24 ~lHa~~v~-~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 24 SMHGVLVD-IYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CEESEEEE-ETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 55555444 46889999999999999999999874
No 366
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.42 E-value=0.04 Score=54.83 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
--+++|.|+.||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999864
No 367
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=93.41 E-value=0.03 Score=58.64 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||+|.|.|..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998753
No 368
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.38 E-value=0.035 Score=57.78 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999953
No 369
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.38 E-value=0.036 Score=55.24 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
No 370
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.37 E-value=0.035 Score=53.55 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 371
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.36 E-value=0.046 Score=52.48 Aligned_cols=27 Identities=30% Similarity=0.527 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998764
No 372
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.35 E-value=0.04 Score=58.94 Aligned_cols=23 Identities=43% Similarity=0.657 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 89999999999999999999964
No 373
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.34 E-value=0.037 Score=54.30 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
No 374
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.33 E-value=0.038 Score=54.34 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999854
No 375
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.32 E-value=0.042 Score=55.30 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
|-.+.|+|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999998744
No 376
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.30 E-value=0.043 Score=55.60 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998643
No 377
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.30 E-value=0.039 Score=53.69 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.|.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999854
No 378
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.27 E-value=0.063 Score=58.14 Aligned_cols=26 Identities=31% Similarity=0.611 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++.++.|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45689999999999999999999865
No 379
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.25 E-value=0.04 Score=53.63 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999854
No 380
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.24 E-value=0.038 Score=53.94 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.+..
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 58999999999999999998843
No 381
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.23 E-value=0.039 Score=53.35 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.=.++|+|++|+|||||++.+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998744
No 382
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.21 E-value=0.039 Score=57.00 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 383
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.19 E-value=0.031 Score=55.10 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999764
No 384
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.19 E-value=0.038 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999853
No 385
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.18 E-value=0.039 Score=53.96 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998854
No 386
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.17 E-value=0.042 Score=52.91 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999999753
No 387
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.16 E-value=0.043 Score=58.02 Aligned_cols=25 Identities=28% Similarity=0.562 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
...+.|.||+|+|||||+++|++..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3689999999999999999999975
No 388
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=93.12 E-value=0.039 Score=60.69 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003437 88 MAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~ 108 (820)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999985
No 389
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.12 E-value=0.043 Score=52.71 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 390
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.09 E-value=0.046 Score=53.72 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 391
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.09 E-value=0.049 Score=55.40 Aligned_cols=27 Identities=22% Similarity=0.539 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+..++.|+||+||||+|..+.|+-.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999998643
No 392
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.07 E-value=0.053 Score=51.91 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 393
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.05 E-value=0.045 Score=53.21 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 394
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.03 E-value=0.045 Score=57.75 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 003437 86 EIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G 107 (820)
-+++|.|++||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
No 395
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.00 E-value=0.047 Score=56.85 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999843
No 396
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.99 E-value=0.045 Score=53.78 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999974
No 397
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.97 E-value=0.043 Score=54.10 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999999864
No 398
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.97 E-value=0.18 Score=66.14 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=30.7
Q ss_pred ceeeeeE--EEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 74 LLHDISG--QAIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 74 iL~~vs~--~i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-|+.+.+ -+++|+++.|.|++|+|||||+..++...
T Consensus 719 eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~ 756 (2050)
T 3cmu_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4666664 69999999999999999999999888754
No 399
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.92 E-value=0.049 Score=54.60 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998643
No 400
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.92 E-value=0.043 Score=53.70 Aligned_cols=23 Identities=22% Similarity=0.586 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
No 401
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.91 E-value=0.048 Score=53.18 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 402
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.90 E-value=0.045 Score=53.40 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 403
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.89 E-value=0.045 Score=52.55 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5799999999999999999854
No 404
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=92.88 E-value=0.046 Score=57.36 Aligned_cols=23 Identities=26% Similarity=0.634 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|.+|+|||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999853
No 405
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=92.88 E-value=0.027 Score=56.32 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-.++|+|++|+|||||++.|.|..
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999863
No 406
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.86 E-value=0.047 Score=53.64 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999999854
No 407
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.86 E-value=0.06 Score=54.83 Aligned_cols=26 Identities=38% Similarity=0.616 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998754
No 408
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.85 E-value=0.049 Score=53.76 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998743
No 409
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.85 E-value=0.049 Score=52.81 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.+.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999963
No 410
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.84 E-value=0.05 Score=52.99 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
No 411
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.83 E-value=0.05 Score=57.81 Aligned_cols=23 Identities=30% Similarity=0.645 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|+.|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999964
No 412
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.82 E-value=0.046 Score=53.94 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 413
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.81 E-value=0.05 Score=52.75 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999999854
No 414
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.81 E-value=0.05 Score=54.38 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998753
No 415
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.79 E-value=0.051 Score=53.20 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999999853
No 416
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.77 E-value=0.038 Score=53.77 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998854
No 417
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.76 E-value=0.051 Score=53.02 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
No 418
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.75 E-value=0.045 Score=56.03 Aligned_cols=28 Identities=36% Similarity=0.628 Sum_probs=21.7
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 82 AIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 82 i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..+|.++.|.|++||||||+++.|+..+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999998765
No 419
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.75 E-value=0.051 Score=53.67 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
=.++|+|++|+|||||++.|.+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999999753
No 420
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.72 E-value=0.05 Score=54.97 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.|.+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
No 421
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.72 E-value=0.052 Score=53.35 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
=.++|+|++|+|||||++.+.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 368999999999999999998753
No 422
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.71 E-value=0.046 Score=52.81 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999974
No 423
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.71 E-value=0.057 Score=57.02 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++.|+|++||||||+.+.|+-.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999863
No 424
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.70 E-value=0.05 Score=53.04 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998853
No 425
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.68 E-value=0.057 Score=53.70 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999853
No 426
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.68 E-value=0.064 Score=54.28 Aligned_cols=27 Identities=48% Similarity=0.720 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+|.+++|.|++||||||+++.|+..+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998765
No 427
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.67 E-value=0.05 Score=54.10 Aligned_cols=23 Identities=17% Similarity=0.528 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999988753
No 428
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.66 E-value=0.029 Score=59.60 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=19.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+-+++|.||+||||||+.+.|+..+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998744
No 429
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.58 E-value=0.045 Score=52.38 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998743
No 430
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.56 E-value=0.055 Score=51.88 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999998764
No 431
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.53 E-value=0.054 Score=53.68 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
No 432
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.47 E-value=0.063 Score=52.61 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
=.++|+|++|+|||||++.+.+..
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC--
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998753
No 433
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.44 E-value=0.061 Score=52.41 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 58999999999999999988753
No 434
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.43 E-value=0.072 Score=60.22 Aligned_cols=35 Identities=23% Similarity=0.521 Sum_probs=29.2
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+++.+ ..+-+|+.++|+|++|+|||||++.|+...
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 55555 566789999999999999999999998753
No 435
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.39 E-value=0.069 Score=53.78 Aligned_cols=23 Identities=43% Similarity=0.677 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++.|+||+||||+|..+.|+-.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999743
No 436
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.36 E-value=0.062 Score=53.65 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999974
No 437
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.36 E-value=0.055 Score=56.88 Aligned_cols=23 Identities=39% Similarity=0.657 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999964
No 438
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.36 E-value=0.063 Score=59.99 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
.+.+++.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999999864
No 439
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.35 E-value=0.057 Score=53.75 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
No 440
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.35 E-value=0.071 Score=54.91 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+|.+++|.|++||||||+++.|+..+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998765
No 441
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.34 E-value=0.066 Score=58.10 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+++|.||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 379999999999999999999865
No 442
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.28 E-value=0.089 Score=53.36 Aligned_cols=45 Identities=20% Similarity=0.222 Sum_probs=31.9
Q ss_pred hcCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCc
Q 003437 214 IHKPSLLFLDEPTS----GLDSTSAYSVVEKVKDIART-GSIVLMTIHQP 258 (820)
Q Consensus 214 ~~~P~lLllDEPts----gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~ 258 (820)
-.+|+++++|--+. .-|.....+++..|+.++++ |.+++++.|..
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~ 182 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEe
Confidence 35788888886432 12445566778888888764 99999998864
No 443
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.27 E-value=0.064 Score=53.23 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998743
No 444
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.20 E-value=0.044 Score=52.76 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=9.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 445
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.18 E-value=0.06 Score=53.89 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999999854
No 446
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.14 E-value=0.063 Score=52.90 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999999853
No 447
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.10 E-value=0.081 Score=56.72 Aligned_cols=25 Identities=36% Similarity=0.606 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+.+++|+||+|||||||.+.|+-..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999999754
No 448
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.08 E-value=0.06 Score=52.79 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 003437 86 EIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G 107 (820)
=.++|+|++|+|||||++.+.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999976
No 449
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.08 E-value=0.068 Score=55.52 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999854
No 450
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.00 E-value=0.089 Score=52.32 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=29.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCcc
Q 003437 215 HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259 (820)
Q Consensus 215 ~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 259 (820)
.+|.+|++||.-. ||......+.+.+.+. ..+..+|++++++.
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 3578999999766 7877766666655432 23567888887764
No 451
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.96 E-value=0.12 Score=50.53 Aligned_cols=33 Identities=27% Similarity=0.148 Sum_probs=25.9
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G 107 (820)
.++.. +.--.|.-++|.|+||+|||||...|..
T Consensus 6 ~lHas-~v~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHAN-FLVIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESE-EEEETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEE-EEEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34443 3444688999999999999999988876
No 452
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=91.92 E-value=0.071 Score=55.59 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999854
No 453
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.91 E-value=0.081 Score=57.01 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999865
No 454
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.91 E-value=0.088 Score=53.27 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+|.++.+-|++||||||+++.|+..+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999998765
No 455
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.89 E-value=0.072 Score=51.87 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999753
No 456
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.88 E-value=0.087 Score=53.47 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRIA 110 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~~ 110 (820)
+|.++.+.|++||||||+++.|+..+.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999999998763
No 457
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=91.84 E-value=0.083 Score=53.18 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999974
No 458
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.76 E-value=0.09 Score=53.74 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
|.+++|-|+.||||||+.+.|+..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 6789999999999999999999865
No 459
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=91.70 E-value=0.042 Score=54.73 Aligned_cols=22 Identities=23% Similarity=0.640 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.|.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 460
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.61 E-value=0.1 Score=53.28 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+|.+++|.|++||||||+.+.|+..+
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998765
No 461
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.58 E-value=0.068 Score=55.47 Aligned_cols=27 Identities=37% Similarity=0.434 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999998765
No 462
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.57 E-value=0.21 Score=56.74 Aligned_cols=71 Identities=23% Similarity=0.297 Sum_probs=53.6
Q ss_pred CCCCChHHHHHHHHHHHH--hc---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCc
Q 003437 196 RRGVSGGERRRVSIGIDI--IH---------------KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQP 258 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL--~~---------------~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 258 (820)
..++||||+|-.-+|++. +. .=+++++||. +-+|.......+++++++ |.=+|+++-.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 347999999975444433 22 1257999999 999999999999999977 6667777765
Q ss_pred cHHHHhhcCEEEEEe
Q 003437 259 SYRIQMLLDRIIVLA 273 (820)
Q Consensus 259 ~~~i~~~~D~v~lL~ 273 (820)
.+....|.++.+-
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 2566788888775
No 463
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=91.52 E-value=0.088 Score=52.82 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.|.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 464
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.49 E-value=0.084 Score=52.12 Aligned_cols=23 Identities=13% Similarity=0.355 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 48999999999999999998743
No 465
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.39 E-value=0.091 Score=52.64 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~ 108 (820)
-.++|+|.+|+|||||++-+++.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999998874
No 466
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=91.35 E-value=0.097 Score=54.69 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-.++++|.+|+|||||+|.|.|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 478999999999999999999965
No 467
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=91.31 E-value=0.044 Score=53.77 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=4.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 468
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=91.27 E-value=0.061 Score=52.18 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 003437 87 IMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G 107 (820)
.++|+|++|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999865
No 469
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.16 E-value=0.034 Score=59.78 Aligned_cols=42 Identities=7% Similarity=0.145 Sum_probs=31.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCcc
Q 003437 216 KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259 (820)
Q Consensus 216 ~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 259 (820)
+++++++|| ...|+......+.+.+.+... ...+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 788999888888777776533 345666776664
No 470
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.11 E-value=0.095 Score=51.86 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~ 108 (820)
=.++|+|++|+|||||++.+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 471
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=90.98 E-value=0.11 Score=52.04 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.+.+..
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 472
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.95 E-value=0.1 Score=51.69 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.+.+..
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998743
No 473
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.90 E-value=0.12 Score=48.42 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=28.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCcc
Q 003437 216 KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259 (820)
Q Consensus 216 ~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 259 (820)
+..+|++||.- .|++..+..+.+.|... ..+..+|+++..+.
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~ 117 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSL 117 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCH
Confidence 34679999985 68888888888877322 22456777776653
No 474
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.83 E-value=0.13 Score=55.09 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..+++|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3579999999999999999999754
No 475
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.82 E-value=0.041 Score=66.79 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=28.6
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 78 ISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 78 vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++.+.+++.++|.||||+|||||.++|++..
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 35667899999999999999999999999965
No 476
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.64 E-value=0.14 Score=50.35 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=29.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCc
Q 003437 216 KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQP 258 (820)
Q Consensus 216 ~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 258 (820)
+++++++||--- +|+ .+++.|+.++++|..||++-++.
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~ 113 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDL 113 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESB
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeecc
Confidence 578999999754 543 36677888887799999988854
No 477
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=90.43 E-value=0.14 Score=55.06 Aligned_cols=33 Identities=18% Similarity=0.466 Sum_probs=27.5
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 003437 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 75 L~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G 107 (820)
|+.+-+-+.+|..+.|.||+|+|||||...++.
T Consensus 113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEETTEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 333336788999999999999999999999875
No 478
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.42 E-value=0.14 Score=56.88 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+++|+||+|||||||.+.|+-.+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999999754
No 479
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.35 E-value=0.15 Score=53.86 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++.-+.|.||+|+|||||.+.|+..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999998765
No 480
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.24 E-value=0.14 Score=50.20 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+.|.||+|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998754
No 481
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=90.15 E-value=0.072 Score=55.10 Aligned_cols=22 Identities=36% Similarity=0.768 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 003437 88 MAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~~ 109 (820)
+.|.||+|+|||||+++|+...
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7899999999999999999854
No 482
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.09 E-value=0.16 Score=51.98 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-.+||+|++||||||+.+.|+-.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998643
No 483
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=89.83 E-value=0.61 Score=56.05 Aligned_cols=23 Identities=39% Similarity=0.706 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+.+.||+|+|||+|.++|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999864
No 484
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=89.70 E-value=0.2 Score=55.06 Aligned_cols=39 Identities=28% Similarity=0.511 Sum_probs=30.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC---------CCCceEEEECCEeC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRIAQ---------GSLEGSVRIDGKPV 125 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~~~---------~~~~G~I~i~G~~~ 125 (820)
-+||+|.+-+|||||+|.|+|.... .+..|.+.++|..+
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i 121 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKI 121 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEE
Confidence 5899999999999999999996421 12457777777654
No 485
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=89.58 E-value=0.18 Score=53.21 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-.++|+|.+|+|||||+|.|.|..
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred ceEEEEecCCCchHHHHHHHhcCc
Confidence 468999999999999999999964
No 486
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.43 E-value=0.17 Score=53.48 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-..+.|.||+|+|||+|.++|+..+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467888999999999999999854
No 487
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=89.42 E-value=0.16 Score=56.33 Aligned_cols=78 Identities=18% Similarity=0.236 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEE---eCCCCCCCHHHHHHHHHHHHHHHhCC
Q 003437 172 KRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFL---DEPTSGLDSTSAYSVVEKVKDIARTG 248 (820)
Q Consensus 172 ~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLll---DEPtsgLD~~~~~~i~~~L~~l~~~g 248 (820)
+.+.++++.++.... . ..+|.+|.+++.-...+...|-++++ |.+ + ...+.++.+.+...+
T Consensus 180 ~~~~~~l~~l~~~~~----~-----~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~----~---~~~l~~l~~~~~~~~ 243 (397)
T 1wxq_A 180 NDVWEAMHKLNLPED----P-----TKWSQDDLLAFASEIRRVNKPMVIAANKADAA----S---DEQIKRLVREEEKRG 243 (397)
T ss_dssp HHHHHHHHHTTCCSC----G-----GGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS----C---HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCCc----c-----ccCCHHHHHHHHHhhhccCCCEEEEEeCcccc----c---hHHHHHHHHHHhhcC
Confidence 346677777776543 1 14899998888777777778998887 544 1 122323233333346
Q ss_pred cEEEEEEcCccHHHHhh
Q 003437 249 SIVLMTIHQPSYRIQML 265 (820)
Q Consensus 249 ~tvi~~~H~~~~~i~~~ 265 (820)
..+|.++=.....+.++
T Consensus 244 ~~vv~iSA~~e~~l~~L 260 (397)
T 1wxq_A 244 YIVIPTSAAAELTLRKA 260 (397)
T ss_dssp CEEEEECHHHHHHHHSC
T ss_pred CcEEEEeccchhhHHHH
Confidence 56666665444445443
No 488
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=89.39 E-value=0.2 Score=53.42 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+.-+.|.||+|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6889999999999999999999754
No 489
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=89.39 E-value=0.18 Score=54.48 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+|..+.|.||+|+|||||++.++..+
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999865
No 490
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.33 E-value=0.18 Score=54.95 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..-.++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998764
No 491
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=89.31 E-value=0.18 Score=52.41 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
.+...+.|.||+|+|||||.+.|+..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34457899999999999999999975
No 492
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=89.26 E-value=0.33 Score=54.43 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|.+++|||||+|.|+|..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~ 25 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKK 25 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 493
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=89.24 E-value=0.12 Score=56.21 Aligned_cols=23 Identities=39% Similarity=0.657 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|.+|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 494
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=89.24 E-value=0.21 Score=53.52 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+..-+.|.||+|+|||+|+++|+...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 355679999999999999999999753
No 495
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=88.85 E-value=0.072 Score=52.49 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 003437 87 IMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G 107 (820)
.++|+|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999998875
No 496
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=89.18 E-value=0.13 Score=51.27 Aligned_cols=22 Identities=36% Similarity=0.800 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHH-HHcC
Q 003437 87 IMAIMGPSGAGKSTFLDA-LAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~-L~G~ 108 (820)
.++|+|++|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999998 6554
No 497
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=89.09 E-value=0.16 Score=56.92 Aligned_cols=22 Identities=41% Similarity=0.767 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.|+|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 498
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=88.98 E-value=0.2 Score=53.45 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~ 108 (820)
-.++|+|++|+|||||++.+.+.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999998875
No 499
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=88.92 E-value=0.2 Score=52.58 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+.-+.|.||+|+|||||++.|+..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999865
No 500
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=88.61 E-value=0.21 Score=54.34 Aligned_cols=26 Identities=27% Similarity=0.583 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++.-+.|.||+|+||||+.++|+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 35568999999999999999999865
Done!