BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003439
         (820 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Mn
 pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Ca
          Length = 501

 Score = 33.5 bits (75), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 532 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE--EFGIKPHLKHYG 589
           +  + F+QM+ + V P+  TF +       +    + +  F M+++   FGI+P L+ YG
Sbjct: 88  RGFDIFKQMIVDKVVPNEATFTN---GARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144

Query: 590 CMVDLFGRAGHLGMAHNFIQNM 611
             +  F R G    A+    +M
Sbjct: 145 PALFGFCRKGDADKAYEVDAHM 166


>pdb|3IM8|A Chain A, Crystal Structure Of Mcat From Streptococcus Pneumoniae
          Length = 307

 Score = 32.7 bits (73), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 12/130 (9%)

Query: 320 YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL---TSIVAQLNDCRNSRSVHGFIMRRGW 376
           Y Q     T+   +  +Q+ G QPD++  +SL   +++VA  +   +       + +RG 
Sbjct: 60  YTQPAILATSVAIYRLLQEKGYQPDMVAGLSLGEYSALVA--SGALDFEDAVALVAKRGA 117

Query: 377 FMEDVII---GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIE 433
           +ME+      G  V  +   + +I  AC     L V    ++NT     AQ  +A E + 
Sbjct: 118 YMEEAAPADSGKMVAVLNTPVEVIEEACQKASELGVVTPANYNT----PAQIVIAGEVVA 173

Query: 434 VFQMMEECNE 443
           V + +E   E
Sbjct: 174 VDRAVELLQE 183


>pdb|2QFC|A Chain A, Crystal Structure Of Bacillus Thuringiensis Plcr Complexed
           With Papr
 pdb|2QFC|B Chain B, Crystal Structure Of Bacillus Thuringiensis Plcr Complexed
           With Papr
 pdb|3U3W|A Chain A, Crystal Structure Of Bacillus Thuringiensis Plcr In
           Complex With The Peptide Papr7 And Dna
 pdb|3U3W|B Chain B, Crystal Structure Of Bacillus Thuringiensis Plcr In
           Complex With The Peptide Papr7 And Dna
          Length = 293

 Score = 29.6 bits (65), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 9/31 (29%), Positives = 23/31 (74%)

Query: 278 NLFVSNNLINMYAKFGMMRHALRVFDQMMER 308
           NL++ N + N+YA+ G ++  + +F+Q++++
Sbjct: 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQ 184


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,288,442
Number of Sequences: 62578
Number of extensions: 1005939
Number of successful extensions: 3171
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3162
Number of HSP's gapped (non-prelim): 11
length of query: 820
length of database: 14,973,337
effective HSP length: 107
effective length of query: 713
effective length of database: 8,277,491
effective search space: 5901851083
effective search space used: 5901851083
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)