Query 003439
Match_columns 820
No_of_seqs 916 out of 5276
Neff 10.1
Searched_HMMs 46136
Date Thu Mar 28 23:27:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003439.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003439hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1E-150 3E-155 1345.2 84.1 772 41-818 80-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2E-126 4E-131 1110.5 68.1 613 206-820 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1.3E-84 2.8E-89 777.0 63.3 679 106-816 47-747 (857)
4 PLN03081 pentatricopeptide (PP 100.0 1.3E-70 2.9E-75 640.9 51.1 472 107-584 84-562 (697)
5 PLN03218 maturation of RBCL 1; 100.0 3E-69 6.6E-74 630.4 52.6 523 74-618 365-916 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 5.1E-66 1.1E-70 603.3 56.4 502 175-686 367-915 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.6E-31 3.5E-36 326.5 63.3 605 59-682 242-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.5E-31 9.8E-36 322.7 65.5 606 59-680 174-832 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 9.9E-36 2.1E-40 255.3 7.7 106 687-810 2-116 (116)
10 PRK11447 cellulose synthase su 99.9 2E-22 4.3E-27 247.4 60.9 601 59-682 43-743 (1157)
11 PRK11447 cellulose synthase su 99.9 1.9E-22 4.1E-27 247.6 54.5 581 85-681 34-701 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 5.4E-20 1.2E-24 215.5 58.9 560 91-680 56-706 (987)
13 PRK09782 bacteriophage N4 rece 99.9 1.7E-19 3.6E-24 211.4 55.4 598 59-682 59-742 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 2.1E-19 4.6E-24 185.9 37.4 451 212-677 51-516 (966)
15 KOG4626 O-linked N-acetylgluco 99.8 4.7E-19 1E-23 183.4 27.8 413 254-680 58-485 (966)
16 TIGR00990 3a0801s09 mitochondr 99.8 7.8E-17 1.7E-21 186.1 39.3 419 212-680 130-571 (615)
17 PRK11788 tetratricopeptide rep 99.8 5.5E-18 1.2E-22 185.6 27.1 290 390-687 44-354 (389)
18 PRK11788 tetratricopeptide rep 99.8 1.5E-17 3.3E-22 182.2 30.0 284 319-645 44-346 (389)
19 PRK15174 Vi polysaccharide exp 99.8 6.9E-16 1.5E-20 177.5 36.7 328 313-651 45-386 (656)
20 PRK10049 pgaA outer membrane p 99.8 1.9E-15 4.1E-20 177.7 40.9 396 216-679 22-455 (765)
21 TIGR00990 3a0801s09 mitochondr 99.8 4.2E-15 9E-20 171.7 40.6 418 181-652 130-577 (615)
22 PRK10049 pgaA outer membrane p 99.8 2.3E-15 5E-20 177.0 37.7 363 285-681 21-423 (765)
23 PRK14574 hmsH outer membrane p 99.7 3.8E-14 8.3E-19 163.3 43.9 420 187-651 43-518 (822)
24 KOG2002 TPR-containing nuclear 99.7 1E-13 2.2E-18 152.2 43.2 150 529-682 627-800 (1018)
25 PRK15174 Vi polysaccharide exp 99.7 3.3E-15 7.1E-20 171.9 33.2 325 346-682 43-383 (656)
26 KOG2002 TPR-containing nuclear 99.7 1.2E-12 2.7E-17 143.9 44.6 477 194-682 146-677 (1018)
27 KOG4422 Uncharacterized conser 99.7 6.9E-13 1.5E-17 132.6 36.6 327 110-480 116-465 (625)
28 KOG4422 Uncharacterized conser 99.7 1.9E-12 4E-17 129.6 36.6 317 46-392 115-479 (625)
29 KOG0495 HAT repeat protein [RN 99.6 6.2E-11 1.3E-15 124.8 45.6 456 189-692 417-890 (913)
30 KOG4318 Bicoid mRNA stability 99.6 2.4E-12 5.3E-17 139.7 35.5 536 42-611 20-622 (1088)
31 KOG2003 TPR repeat-containing 99.6 2.6E-13 5.6E-18 136.2 25.8 426 215-667 207-710 (840)
32 PRK14574 hmsH outer membrane p 99.6 4.4E-12 9.5E-17 146.4 39.1 385 284-680 73-513 (822)
33 KOG2076 RNA polymerase III tra 99.6 3E-10 6.5E-15 124.7 44.6 576 92-676 152-891 (895)
34 KOG2076 RNA polymerase III tra 99.5 2.8E-10 6.1E-15 125.0 40.4 304 356-662 388-785 (895)
35 PF13429 TPR_15: Tetratricopep 99.5 6.3E-14 1.4E-18 145.4 10.4 255 419-679 15-276 (280)
36 KOG0547 Translocase of outer m 99.5 2.6E-10 5.6E-15 116.6 31.9 213 461-679 339-565 (606)
37 KOG4318 Bicoid mRNA stability 99.4 2.8E-10 6E-15 124.1 33.3 128 553-684 463-598 (1088)
38 KOG1155 Anaphase-promoting com 99.4 2.5E-10 5.4E-15 116.1 29.6 191 483-678 330-534 (559)
39 KOG1915 Cell cycle control pro 99.4 5.4E-09 1.2E-13 106.6 38.0 478 190-679 85-624 (677)
40 KOG1126 DNA-binding cell divis 99.4 2.8E-11 6.1E-16 128.8 20.6 275 396-680 334-620 (638)
41 KOG1126 DNA-binding cell divis 99.4 2E-11 4.4E-16 129.8 19.3 245 426-680 333-586 (638)
42 KOG0495 HAT repeat protein [RN 99.4 1E-07 2.2E-12 101.2 46.2 389 255-658 387-794 (913)
43 KOG1915 Cell cycle control pro 99.4 3.1E-09 6.7E-14 108.3 32.9 417 288-719 82-535 (677)
44 PRK10747 putative protoheme IX 99.4 1.9E-10 4.1E-15 125.0 26.4 275 394-679 97-389 (398)
45 KOG1155 Anaphase-promoting com 99.4 4.2E-09 9E-14 107.4 33.7 253 420-679 235-494 (559)
46 TIGR00540 hemY_coli hemY prote 99.3 9.4E-10 2E-14 120.3 30.2 220 419-643 160-396 (409)
47 PRK10747 putative protoheme IX 99.3 6.3E-10 1.4E-14 120.9 26.9 284 292-646 97-390 (398)
48 TIGR00540 hemY_coli hemY prote 99.3 2.7E-10 5.8E-15 124.6 23.4 218 458-675 128-359 (409)
49 PF13429 TPR_15: Tetratricopep 99.3 1.2E-11 2.6E-16 128.3 10.9 212 359-576 58-275 (280)
50 KOG2003 TPR repeat-containing 99.3 9.8E-10 2.1E-14 110.9 23.6 268 318-595 427-704 (840)
51 KOG1173 Anaphase-promoting com 99.3 1.1E-08 2.3E-13 107.2 30.1 261 413-680 245-518 (611)
52 PF13041 PPR_2: PPR repeat fam 99.2 1.8E-11 3.9E-16 89.0 6.0 50 207-256 1-50 (50)
53 KOG1840 Kinesin light chain [C 99.2 4.5E-09 9.8E-14 113.6 27.0 169 484-678 284-477 (508)
54 TIGR02521 type_IV_pilW type IV 99.2 1.3E-09 2.8E-14 109.7 21.1 198 482-680 30-232 (234)
55 KOG2047 mRNA splicing factor [ 99.2 4.2E-06 9.1E-11 89.2 45.2 276 382-680 388-687 (835)
56 COG2956 Predicted N-acetylgluc 99.2 2E-08 4.3E-13 98.0 25.3 305 323-700 48-367 (389)
57 PF13041 PPR_2: PPR repeat fam 99.2 5.7E-11 1.2E-15 86.3 5.8 50 308-357 1-50 (50)
58 KOG0547 Translocase of outer m 99.1 1.6E-07 3.5E-12 96.6 31.2 217 422-647 336-567 (606)
59 KOG0985 Vesicle coat protein c 99.1 7.5E-06 1.6E-10 91.2 45.4 468 181-678 609-1247(1666)
60 COG2956 Predicted N-acetylgluc 99.1 7.7E-08 1.7E-12 94.0 25.9 286 222-576 48-345 (389)
61 KOG1173 Anaphase-promoting com 99.1 4.6E-07 9.9E-12 95.2 33.4 493 49-625 18-530 (611)
62 KOG1174 Anaphase-promoting com 99.1 2.5E-07 5.3E-12 93.2 30.1 305 342-653 191-507 (564)
63 COG3071 HemY Uncharacterized e 99.1 1.3E-07 2.8E-12 95.5 28.0 279 323-645 97-389 (400)
64 KOG2376 Signal recognition par 99.1 6.7E-07 1.4E-11 94.5 34.1 431 217-674 20-514 (652)
65 PRK12370 invasion protein regu 99.1 1.2E-08 2.6E-13 116.0 23.3 243 427-680 276-535 (553)
66 KOG3616 Selective LIM binding 99.1 3E-07 6.5E-12 98.4 31.1 462 91-641 456-932 (1636)
67 KOG3785 Uncharacterized conser 99.1 4.6E-07 9.9E-12 89.4 29.5 412 186-654 65-497 (557)
68 COG3071 HemY Uncharacterized e 99.1 1.6E-07 3.5E-12 94.8 27.1 285 222-542 97-389 (400)
69 KOG2047 mRNA splicing factor [ 99.1 4.4E-06 9.5E-11 89.0 38.3 458 178-677 102-612 (835)
70 KOG1129 TPR repeat-containing 99.0 1.6E-08 3.5E-13 98.4 17.0 228 416-681 227-459 (478)
71 PRK11189 lipoprotein NlpI; Pro 99.0 2.4E-08 5.2E-13 103.8 18.8 189 484-681 65-266 (296)
72 KOG4162 Predicted calmodulin-b 99.0 6.5E-06 1.4E-10 89.9 36.2 399 274-680 318-783 (799)
73 COG3063 PilF Tfp pilus assembl 99.0 3.7E-08 8E-13 92.0 16.7 161 517-682 38-204 (250)
74 PRK12370 invasion protein regu 99.0 3.9E-08 8.5E-13 111.8 20.9 211 462-680 275-502 (553)
75 TIGR02521 type_IV_pilW type IV 99.0 1.1E-07 2.3E-12 95.6 21.8 198 412-646 31-232 (234)
76 KOG0985 Vesicle coat protein c 98.9 8.2E-05 1.8E-09 83.3 42.9 540 82-664 609-1326(1666)
77 KOG1174 Anaphase-promoting com 98.9 6.6E-06 1.4E-10 83.2 31.6 405 278-725 96-519 (564)
78 KOG2376 Signal recognition par 98.9 6.1E-06 1.3E-10 87.4 32.6 365 86-508 19-442 (652)
79 PRK11189 lipoprotein NlpI; Pro 98.9 2.4E-07 5.1E-12 96.4 21.7 227 426-660 40-280 (296)
80 KOG1840 Kinesin light chain [C 98.8 5.3E-07 1.1E-11 97.8 22.8 95 551-645 369-478 (508)
81 KOG4162 Predicted calmodulin-b 98.8 1.2E-05 2.6E-10 87.9 31.9 444 171-652 316-789 (799)
82 KOG3785 Uncharacterized conser 98.7 6.7E-05 1.5E-09 74.5 31.8 210 463-680 269-490 (557)
83 PF12569 NARP1: NMDA receptor- 98.7 2.5E-05 5.5E-10 86.0 31.7 251 416-675 198-515 (517)
84 KOG1156 N-terminal acetyltrans 98.7 2.5E-05 5.4E-10 83.8 30.1 216 256-510 19-246 (700)
85 PF12569 NARP1: NMDA receptor- 98.7 7.1E-06 1.5E-10 90.3 26.5 280 318-645 12-333 (517)
86 PRK04841 transcriptional regul 98.7 0.00033 7.2E-09 85.9 44.3 194 487-680 535-760 (903)
87 KOG1129 TPR repeat-containing 98.7 3.6E-07 7.7E-12 89.3 14.1 222 384-611 226-455 (478)
88 KOG3616 Selective LIM binding 98.7 4.9E-05 1.1E-09 82.0 31.1 259 390-680 741-1024(1636)
89 KOG1125 TPR repeat-containing 98.7 5.8E-07 1.3E-11 94.9 16.2 217 461-680 298-527 (579)
90 KOG1156 N-terminal acetyltrans 98.7 0.00021 4.6E-09 76.9 35.1 409 188-644 51-509 (700)
91 KOG3617 WD40 and TPR repeat-co 98.6 0.0007 1.5E-08 74.5 36.9 268 77-407 724-993 (1416)
92 PF12854 PPR_1: PPR repeat 98.6 5.1E-08 1.1E-12 63.5 3.6 34 172-205 1-34 (34)
93 PF04733 Coatomer_E: Coatomer 98.6 1.7E-06 3.6E-11 88.7 16.0 148 524-680 112-265 (290)
94 KOG0624 dsRNA-activated protei 98.6 0.0001 2.3E-09 73.0 27.0 308 283-651 42-375 (504)
95 cd05804 StaR_like StaR_like; a 98.6 3E-05 6.5E-10 83.7 26.4 294 382-681 7-337 (355)
96 KOG0548 Molecular co-chaperone 98.6 2.9E-05 6.2E-10 81.8 24.4 214 453-680 229-455 (539)
97 KOG1127 TPR repeat-containing 98.5 0.00026 5.6E-09 79.7 32.5 491 162-672 475-1028(1238)
98 KOG4340 Uncharacterized conser 98.5 4.7E-05 1E-09 73.8 22.9 277 395-680 126-443 (459)
99 COG3063 PilF Tfp pilus assembl 98.5 3E-05 6.5E-10 73.0 20.5 166 484-652 70-242 (250)
100 PRK04841 transcriptional regul 98.5 0.0026 5.6E-08 78.1 43.8 193 385-577 535-759 (903)
101 KOG1127 TPR repeat-containing 98.5 0.00045 9.8E-09 77.8 31.8 275 398-678 800-1102(1238)
102 TIGR03302 OM_YfiO outer membra 98.4 9.5E-06 2.1E-10 81.8 17.6 179 482-680 32-232 (235)
103 PF04733 Coatomer_E: Coatomer 98.4 7.8E-06 1.7E-10 83.8 16.8 225 415-651 38-270 (290)
104 KOG3617 WD40 and TPR repeat-co 98.4 0.004 8.7E-08 68.8 37.4 298 76-440 754-1108(1416)
105 KOG0548 Molecular co-chaperone 98.4 0.00016 3.5E-09 76.3 26.2 436 187-664 11-473 (539)
106 PF12854 PPR_1: PPR repeat 98.4 3.2E-07 7E-12 59.7 4.0 33 274-306 2-34 (34)
107 KOG1070 rRNA processing protei 98.4 1.3E-05 2.7E-10 92.7 19.1 198 482-683 1457-1666(1710)
108 PRK15359 type III secretion sy 98.4 4.1E-06 8.9E-11 76.6 12.6 121 535-662 14-137 (144)
109 PRK15359 type III secretion sy 98.4 4.9E-06 1.1E-10 76.1 12.9 98 581-680 22-121 (144)
110 PRK10370 formate-dependent nit 98.3 1.6E-05 3.5E-10 76.9 15.6 117 562-680 52-173 (198)
111 cd05804 StaR_like StaR_like; a 98.3 0.00051 1.1E-08 74.1 28.7 266 412-680 6-293 (355)
112 KOG1914 mRNA cleavage and poly 98.3 0.0081 1.7E-07 63.8 35.1 421 175-602 17-527 (656)
113 PRK15363 pathogenicity island 98.3 8.4E-06 1.8E-10 73.2 11.7 118 585-725 35-154 (157)
114 KOG1128 Uncharacterized conser 98.3 2.6E-05 5.6E-10 84.9 16.2 220 377-647 394-617 (777)
115 KOG4340 Uncharacterized conser 98.2 0.00028 6E-09 68.7 20.3 178 495-676 124-335 (459)
116 PLN02789 farnesyltranstransfer 98.2 0.00019 4.2E-09 74.6 21.0 169 492-664 80-268 (320)
117 PRK10370 formate-dependent nit 98.2 0.00013 2.9E-09 70.5 18.6 153 490-655 23-182 (198)
118 TIGR03302 OM_YfiO outer membra 98.2 6.9E-05 1.5E-09 75.5 17.3 179 449-648 34-234 (235)
119 PRK15179 Vi polysaccharide bio 98.2 6.3E-05 1.4E-09 86.2 18.3 139 512-655 84-226 (694)
120 COG4783 Putative Zn-dependent 98.2 0.00062 1.3E-08 71.4 23.4 115 560-676 317-433 (484)
121 KOG1128 Uncharacterized conser 98.1 3E-05 6.6E-10 84.4 13.8 186 479-679 394-581 (777)
122 KOG1070 rRNA processing protei 98.1 0.00028 6E-09 82.1 21.7 230 445-678 1454-1698(1710)
123 KOG1125 TPR repeat-containing 98.1 8.9E-05 1.9E-09 78.9 16.4 211 359-576 299-525 (579)
124 TIGR00756 PPR pentatricopeptid 98.1 4.4E-06 9.5E-11 55.3 4.4 35 210-244 1-35 (35)
125 COG5010 TadD Flp pilus assembl 98.1 0.00011 2.4E-09 70.8 15.4 134 545-680 62-197 (257)
126 COG4783 Putative Zn-dependent 98.1 0.00042 9.1E-09 72.6 20.6 140 520-681 312-455 (484)
127 TIGR02552 LcrH_SycD type III s 98.1 8.2E-05 1.8E-09 67.5 13.2 95 586-680 18-114 (135)
128 TIGR00756 PPR pentatricopeptid 98.0 9.2E-06 2E-10 53.7 4.2 35 311-345 1-35 (35)
129 COG5010 TadD Flp pilus assembl 98.0 0.00032 7E-09 67.7 15.3 148 490-641 73-226 (257)
130 PLN02789 farnesyltranstransfer 98.0 0.00069 1.5E-08 70.5 19.2 186 489-679 43-249 (320)
131 KOG0624 dsRNA-activated protei 97.9 0.025 5.5E-07 56.6 27.9 367 216-651 45-427 (504)
132 PRK15179 Vi polysaccharide bio 97.9 0.00086 1.9E-08 77.1 20.6 142 479-624 82-229 (694)
133 PF13812 PPR_3: Pentatricopept 97.9 1.8E-05 3.8E-10 51.9 4.3 34 209-242 1-34 (34)
134 KOG2053 Mitochondrial inherita 97.9 0.079 1.7E-06 60.1 34.3 210 192-406 23-251 (932)
135 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00018 3.8E-09 76.3 13.2 123 551-678 171-295 (395)
136 PRK14720 transcript cleavage f 97.9 0.0012 2.6E-08 76.6 20.6 132 517-669 119-273 (906)
137 TIGR02552 LcrH_SycD type III s 97.8 0.00041 8.9E-09 62.8 13.6 114 536-653 5-121 (135)
138 PRK14720 transcript cleavage f 97.8 0.0041 8.9E-08 72.3 23.5 175 308-550 29-203 (906)
139 PF13812 PPR_3: Pentatricopept 97.8 3.7E-05 8.1E-10 50.3 4.3 34 310-343 1-34 (34)
140 PF01535 PPR: PPR repeat; Int 97.7 4.2E-05 9.1E-10 48.8 3.6 31 210-240 1-31 (31)
141 KOG1914 mRNA cleavage and poly 97.7 0.11 2.3E-06 55.6 33.8 210 465-677 310-536 (656)
142 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00085 1.8E-08 71.3 14.9 126 485-615 171-298 (395)
143 PF09976 TPR_21: Tetratricopep 97.7 0.00091 2E-08 61.4 13.2 115 562-677 24-144 (145)
144 PLN03088 SGT1, suppressor of 97.7 0.00032 6.9E-09 74.8 11.5 95 558-655 11-108 (356)
145 COG3898 Uncharacterized membra 97.6 0.016 3.5E-07 59.0 21.9 246 425-687 133-397 (531)
146 cd00189 TPR Tetratricopeptide 97.6 0.00037 8.1E-09 57.9 9.3 92 588-679 3-96 (100)
147 PF13414 TPR_11: TPR repeat; P 97.6 9.2E-05 2E-09 57.9 5.0 65 616-680 2-67 (69)
148 KOG0553 TPR repeat-containing 97.6 0.00062 1.3E-08 67.1 10.8 105 559-666 91-198 (304)
149 PF12895 Apc3: Anaphase-promot 97.6 6.9E-05 1.5E-09 61.3 3.6 78 598-676 2-83 (84)
150 KOG0553 TPR repeat-containing 97.6 0.00034 7.4E-09 68.9 8.9 88 593-680 89-178 (304)
151 PF01535 PPR: PPR repeat; Int 97.5 9.2E-05 2E-09 47.2 3.3 31 311-341 1-31 (31)
152 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0013 2.7E-08 57.9 11.6 101 552-652 5-111 (119)
153 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0008 1.7E-08 59.2 10.2 96 586-681 3-106 (119)
154 KOG3081 Vesicle coat complex C 97.5 0.0092 2E-07 57.8 17.4 147 522-678 116-269 (299)
155 PRK10153 DNA-binding transcrip 97.5 0.0025 5.3E-08 71.1 16.0 140 511-652 334-488 (517)
156 PF09976 TPR_21: Tetratricopep 97.5 0.0041 8.8E-08 57.0 15.0 115 526-643 23-144 (145)
157 PF13432 TPR_16: Tetratricopep 97.4 0.00026 5.6E-09 54.6 5.2 58 623-680 3-60 (65)
158 PF04840 Vps16_C: Vps16, C-ter 97.4 0.073 1.6E-06 55.4 24.6 120 487-626 181-300 (319)
159 KOG3060 Uncharacterized conser 97.4 0.0068 1.5E-07 58.2 15.2 182 496-681 25-221 (289)
160 KOG3081 Vesicle coat complex C 97.4 0.014 3E-07 56.7 17.1 154 491-651 116-276 (299)
161 PRK02603 photosystem I assembl 97.4 0.0039 8.4E-08 59.1 13.4 126 517-666 38-166 (172)
162 CHL00033 ycf3 photosystem I as 97.3 0.001 2.2E-08 62.8 9.3 94 585-678 35-140 (168)
163 PF13432 TPR_16: Tetratricopep 97.3 0.00074 1.6E-08 52.0 6.3 61 591-651 3-65 (65)
164 KOG3060 Uncharacterized conser 97.3 0.014 3E-07 56.2 15.8 192 461-655 25-229 (289)
165 PRK02603 photosystem I assembl 97.3 0.0016 3.5E-08 61.7 9.9 80 587-666 37-121 (172)
166 PLN03088 SGT1, suppressor of 97.3 0.0028 6.2E-08 67.6 12.5 100 521-625 9-111 (356)
167 KOG1538 Uncharacterized conser 97.2 0.028 6.2E-07 60.8 19.1 166 389-617 640-806 (1081)
168 KOG0550 Molecular chaperone (D 97.2 0.0038 8.1E-08 64.1 12.0 88 593-680 257-350 (486)
169 cd00189 TPR Tetratricopeptide 97.2 0.0046 9.9E-08 51.1 10.9 89 557-648 8-99 (100)
170 PRK15331 chaperone protein Sic 97.2 0.013 2.9E-07 53.1 13.8 89 591-679 43-133 (165)
171 PF14559 TPR_19: Tetratricopep 97.1 0.00061 1.3E-08 53.0 4.4 53 628-680 2-54 (68)
172 PF04840 Vps16_C: Vps16, C-ter 97.1 0.37 8E-06 50.2 25.7 105 385-506 181-285 (319)
173 KOG2280 Vacuolar assembly/sort 97.1 0.66 1.4E-05 51.9 28.1 361 219-610 399-795 (829)
174 COG4235 Cytochrome c biogenesi 97.1 0.0027 5.9E-08 63.1 9.0 100 583-682 154-258 (287)
175 PF13371 TPR_9: Tetratricopept 97.0 0.0012 2.6E-08 52.2 5.3 58 624-681 2-59 (73)
176 COG4700 Uncharacterized protei 97.0 0.06 1.3E-06 49.3 16.0 148 525-679 67-221 (251)
177 KOG1538 Uncharacterized conser 97.0 0.15 3.3E-06 55.4 21.6 203 267-535 623-825 (1081)
178 PF05843 Suf: Suppressor of fo 97.0 0.011 2.4E-07 60.7 13.2 134 516-652 3-142 (280)
179 CHL00033 ycf3 photosystem I as 97.0 0.01 2.2E-07 55.9 12.0 60 517-576 38-99 (168)
180 PF12895 Apc3: Anaphase-promot 96.9 0.0024 5.3E-08 52.1 6.5 80 527-610 2-83 (84)
181 PRK10153 DNA-binding transcrip 96.9 0.012 2.7E-07 65.6 13.8 134 545-682 333-484 (517)
182 PF13414 TPR_11: TPR repeat; P 96.9 0.0019 4.1E-08 50.4 5.3 65 584-648 2-69 (69)
183 PF13431 TPR_17: Tetratricopep 96.9 0.00042 9.2E-09 45.0 1.1 32 640-671 2-33 (34)
184 KOG2053 Mitochondrial inherita 96.9 1.3 2.9E-05 50.6 38.0 153 517-678 439-606 (932)
185 PF08579 RPM2: Mitochondrial r 96.8 0.012 2.6E-07 49.3 9.5 81 211-291 27-116 (120)
186 PF14559 TPR_19: Tetratricopep 96.8 0.0017 3.8E-08 50.4 4.5 61 597-657 3-65 (68)
187 PF14938 SNAP: Soluble NSF att 96.8 0.11 2.4E-06 53.7 18.8 63 587-649 157-228 (282)
188 COG4700 Uncharacterized protei 96.8 0.032 6.8E-07 51.1 12.3 107 574-680 78-189 (251)
189 PF14938 SNAP: Soluble NSF att 96.7 0.95 2.1E-05 46.7 25.1 155 416-612 98-264 (282)
190 PRK15363 pathogenicity island 96.7 0.032 6.9E-07 50.5 11.8 95 487-583 39-137 (157)
191 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.0051 1.1E-07 65.0 7.4 61 586-646 76-141 (453)
192 PF10037 MRP-S27: Mitochondria 96.6 0.022 4.8E-07 61.0 12.3 114 446-559 64-183 (429)
193 PRK10803 tol-pal system protei 96.6 0.015 3.3E-07 58.7 10.6 88 593-680 151-246 (263)
194 PF12688 TPR_5: Tetratrico pep 96.5 0.041 8.8E-07 47.9 11.0 91 520-610 7-100 (120)
195 PF07079 DUF1347: Protein of u 96.5 1.5 3.2E-05 46.4 35.4 82 211-292 79-180 (549)
196 PF08579 RPM2: Mitochondrial r 96.5 0.03 6.5E-07 47.0 9.4 77 520-597 31-116 (120)
197 PF10037 MRP-S27: Mitochondria 96.4 0.041 8.9E-07 59.0 12.9 61 315-375 108-168 (429)
198 PF13428 TPR_14: Tetratricopep 96.4 0.0047 1E-07 43.0 3.9 41 619-659 3-43 (44)
199 PF05843 Suf: Suppressor of fo 96.4 0.028 6E-07 57.9 11.1 129 550-680 2-136 (280)
200 PF13281 DUF4071: Domain of un 96.4 0.26 5.6E-06 51.8 18.0 160 489-651 147-339 (374)
201 PF13371 TPR_9: Tetratricopept 96.3 0.0097 2.1E-07 46.9 5.8 64 593-656 3-68 (73)
202 PF06239 ECSIT: Evolutionarily 96.3 0.028 6.1E-07 53.3 9.4 97 198-294 34-153 (228)
203 KOG0543 FKBP-type peptidyl-pro 96.2 0.026 5.6E-07 58.5 9.5 64 617-680 257-320 (397)
204 PF12688 TPR_5: Tetratrico pep 96.2 0.044 9.6E-07 47.7 9.5 86 592-677 8-101 (120)
205 PRK10866 outer membrane biogen 96.2 0.23 5E-06 49.8 16.1 169 491-678 40-239 (243)
206 PF06239 ECSIT: Evolutionarily 96.1 0.024 5.2E-07 53.7 8.1 73 527-600 65-153 (228)
207 KOG2041 WD40 repeat protein [G 96.1 3.1 6.7E-05 46.2 30.7 225 377-643 848-1083(1189)
208 KOG2796 Uncharacterized conser 96.1 0.37 8.1E-06 46.9 15.7 167 384-553 139-323 (366)
209 KOG4555 TPR repeat-containing 96.0 0.042 9.1E-07 47.1 8.1 89 594-682 52-146 (175)
210 COG3898 Uncharacterized membra 96.0 2.4 5.3E-05 43.9 25.6 212 393-611 166-389 (531)
211 PRK10803 tol-pal system protei 95.9 0.095 2.1E-06 53.0 12.1 101 552-652 146-252 (263)
212 KOG2796 Uncharacterized conser 95.9 1.5 3.2E-05 42.9 18.9 169 486-654 139-323 (366)
213 PF13424 TPR_12: Tetratricopep 95.9 0.0053 1.1E-07 49.2 2.4 61 619-679 7-74 (78)
214 COG0457 NrfG FOG: TPR repeat [ 95.9 1.9 4.2E-05 42.1 23.5 194 483-680 59-265 (291)
215 KOG1130 Predicted G-alpha GTPa 95.8 0.025 5.4E-07 58.0 7.0 128 551-678 197-342 (639)
216 KOG2066 Vacuolar assembly/sort 95.7 4.2 9E-05 46.1 24.1 80 215-328 362-441 (846)
217 PRK11906 transcriptional regul 95.7 0.57 1.2E-05 50.1 17.0 157 515-675 252-431 (458)
218 PF03704 BTAD: Bacterial trans 95.6 0.11 2.4E-06 47.5 10.3 107 559-679 16-124 (146)
219 KOG2280 Vacuolar assembly/sort 95.5 5.8 0.00013 44.8 26.1 111 548-674 683-793 (829)
220 PRK10866 outer membrane biogen 95.4 1.7 3.7E-05 43.5 18.7 57 418-477 38-98 (243)
221 PF13424 TPR_12: Tetratricopep 95.4 0.022 4.7E-07 45.6 4.2 59 588-646 8-75 (78)
222 KOG2041 WD40 repeat protein [G 95.3 0.43 9.2E-06 52.6 14.4 252 396-680 678-952 (1189)
223 PF13525 YfiO: Outer membrane 95.3 1.3 2.8E-05 43.1 17.0 139 520-680 11-170 (203)
224 PF07079 DUF1347: Protein of u 95.2 5.2 0.00011 42.5 33.2 72 605-677 444-521 (549)
225 PF12921 ATP13: Mitochondrial 95.1 0.1 2.3E-06 45.9 7.8 95 483-593 2-96 (126)
226 KOG0550 Molecular chaperone (D 95.0 1 2.2E-05 47.0 15.5 160 492-658 178-361 (486)
227 COG0457 NrfG FOG: TPR repeat [ 95.0 3.9 8.4E-05 39.9 22.9 197 449-649 60-268 (291)
228 KOG1130 Predicted G-alpha GTPa 95.0 0.69 1.5E-05 47.9 14.1 59 517-575 238-301 (639)
229 PF03704 BTAD: Bacterial trans 95.0 0.38 8.2E-06 44.0 11.7 69 517-587 65-138 (146)
230 COG4235 Cytochrome c biogenesi 95.0 0.72 1.6E-05 46.3 14.1 105 546-652 152-262 (287)
231 KOG1941 Acetylcholine receptor 94.9 0.24 5.2E-06 50.3 10.5 160 517-676 86-271 (518)
232 PF12921 ATP13: Mitochondrial 94.8 0.29 6.4E-06 43.1 9.9 81 548-628 1-99 (126)
233 PLN03098 LPA1 LOW PSII ACCUMUL 94.7 0.16 3.4E-06 54.2 9.2 63 546-611 71-138 (453)
234 PF09205 DUF1955: Domain of un 94.5 1.1 2.3E-05 39.0 11.8 139 526-683 14-152 (161)
235 PRK11906 transcriptional regul 94.3 0.49 1.1E-05 50.6 11.7 117 564-680 273-401 (458)
236 PF00515 TPR_1: Tetratricopept 94.0 0.077 1.7E-06 34.3 3.5 33 618-650 2-34 (34)
237 COG4105 ComL DNA uptake lipopr 94.0 4.9 0.00011 39.7 16.9 133 522-680 42-196 (254)
238 KOG0543 FKBP-type peptidyl-pro 93.9 0.38 8.2E-06 50.1 9.7 95 586-680 258-355 (397)
239 PF13525 YfiO: Outer membrane 93.8 4.4 9.5E-05 39.4 16.9 57 418-477 11-71 (203)
240 PF07719 TPR_2: Tetratricopept 93.8 0.12 2.6E-06 33.2 4.1 33 618-650 2-34 (34)
241 KOG3941 Intermediate in Toll s 93.7 0.28 6.2E-06 48.1 7.9 109 502-611 53-185 (406)
242 COG1729 Uncharacterized protei 93.6 0.34 7.3E-06 48.0 8.5 82 597-680 153-244 (262)
243 PF04053 Coatomer_WDAD: Coatom 93.6 0.38 8.3E-06 52.5 9.9 131 525-681 272-403 (443)
244 smart00299 CLH Clathrin heavy 93.4 2.6 5.7E-05 38.0 13.7 125 452-628 11-136 (140)
245 PF04053 Coatomer_WDAD: Coatom 93.2 3 6.5E-05 45.7 15.9 151 291-507 273-426 (443)
246 COG3118 Thioredoxin domain-con 93.1 6.1 0.00013 39.8 16.2 120 558-680 143-265 (304)
247 PF04184 ST7: ST7 protein; In 93.1 6.2 0.00014 42.6 17.2 55 520-575 265-321 (539)
248 KOG3941 Intermediate in Toll s 93.0 0.67 1.5E-05 45.6 9.3 100 195-294 51-173 (406)
249 PF13512 TPR_18: Tetratricopep 92.9 1.3 2.7E-05 39.6 10.2 57 596-652 21-82 (142)
250 KOG4234 TPR repeat-containing 92.8 0.41 8.8E-06 44.6 7.0 87 594-680 104-197 (271)
251 PF13512 TPR_18: Tetratricopep 92.7 2.6 5.6E-05 37.7 11.8 19 633-651 115-133 (142)
252 KOG1920 IkappaB kinase complex 92.6 12 0.00025 44.8 19.8 153 497-677 894-1052(1265)
253 KOG2114 Vacuolar assembly/sort 92.4 25 0.00055 40.6 29.0 75 592-667 712-787 (933)
254 PRK11619 lytic murein transgly 92.3 27 0.00058 40.6 29.2 267 378-658 96-383 (644)
255 COG3118 Thioredoxin domain-con 92.3 6.8 0.00015 39.4 15.3 152 523-677 143-299 (304)
256 PF04184 ST7: ST7 protein; In 91.9 3.8 8.2E-05 44.2 13.9 139 526-679 180-323 (539)
257 smart00299 CLH Clathrin heavy 91.9 8.3 0.00018 34.7 14.9 129 513-661 6-135 (140)
258 COG5107 RNA14 Pre-mRNA 3'-end 91.7 21 0.00045 38.1 29.4 136 514-653 397-538 (660)
259 KOG2610 Uncharacterized conser 91.7 3.8 8.3E-05 41.6 12.8 152 496-652 116-284 (491)
260 PF10300 DUF3808: Protein of u 91.6 4.1 8.9E-05 45.3 14.8 116 562-680 246-376 (468)
261 KOG1585 Protein required for f 91.6 8.7 0.00019 37.4 14.5 106 414-542 33-138 (308)
262 PRK09687 putative lyase; Provi 91.3 19 0.00041 36.9 24.5 81 175-257 34-118 (280)
263 KOG2610 Uncharacterized conser 91.3 1.5 3.3E-05 44.3 9.7 159 526-687 115-283 (491)
264 COG4105 ComL DNA uptake lipopr 90.9 18 0.00039 35.8 16.9 166 494-680 45-233 (254)
265 PF08631 SPO22: Meiosis protei 90.9 21 0.00046 36.6 23.0 19 626-644 255-273 (278)
266 PF13281 DUF4071: Domain of un 90.8 9.4 0.0002 40.4 15.5 72 183-254 146-227 (374)
267 COG1729 Uncharacterized protei 90.3 2.5 5.5E-05 42.0 10.2 84 526-611 153-241 (262)
268 PF13181 TPR_8: Tetratricopept 90.0 0.44 9.5E-06 30.6 3.3 31 619-649 3-33 (34)
269 KOG1258 mRNA processing protei 89.9 37 0.0008 37.8 29.6 182 482-666 296-490 (577)
270 KOG4279 Serine/threonine prote 89.7 6 0.00013 44.5 13.2 183 414-651 203-400 (1226)
271 PRK15331 chaperone protein Sic 89.0 1.4 3.1E-05 40.3 6.8 81 495-576 49-132 (165)
272 PF09205 DUF1955: Domain of un 89.0 10 0.00023 33.1 11.4 57 521-578 93-149 (161)
273 PF13176 TPR_7: Tetratricopept 88.9 0.55 1.2E-05 30.8 3.2 26 620-645 2-27 (36)
274 COG5107 RNA14 Pre-mRNA 3'-end 88.9 36 0.00078 36.4 30.5 435 175-630 39-548 (660)
275 PF10300 DUF3808: Protein of u 88.9 10 0.00022 42.2 15.1 117 527-645 246-375 (468)
276 PF13170 DUF4003: Protein of u 88.5 6.6 0.00014 40.5 12.2 62 531-593 160-225 (297)
277 PF13176 TPR_7: Tetratricopept 88.4 0.52 1.1E-05 30.9 2.8 26 653-678 1-26 (36)
278 KOG1585 Protein required for f 88.3 19 0.00042 35.2 14.0 141 517-674 94-250 (308)
279 PRK09687 putative lyase; Provi 88.3 33 0.00072 35.2 26.4 75 481-560 204-278 (280)
280 KOG1920 IkappaB kinase complex 88.2 33 0.00071 41.4 18.4 110 485-611 941-1052(1265)
281 PF13428 TPR_14: Tetratricopep 87.9 0.83 1.8E-05 31.6 3.7 29 652-680 2-30 (44)
282 PF04097 Nic96: Nup93/Nic96; 87.8 18 0.00038 41.9 16.5 86 419-510 265-354 (613)
283 KOG4555 TPR repeat-containing 87.5 11 0.00025 32.8 10.7 50 493-542 53-105 (175)
284 COG4785 NlpI Lipoprotein NlpI, 87.4 13 0.00028 35.6 12.0 160 515-682 100-268 (297)
285 PF09613 HrpB1_HrpK: Bacterial 87.1 18 0.00039 33.1 12.5 90 556-648 17-108 (160)
286 COG3629 DnrI DNA-binding trans 87.0 2.5 5.4E-05 42.7 7.8 76 483-558 153-236 (280)
287 KOG1941 Acetylcholine receptor 86.7 43 0.00093 34.8 19.0 92 414-505 85-184 (518)
288 KOG2066 Vacuolar assembly/sort 86.5 69 0.0015 36.9 20.0 141 79-236 392-532 (846)
289 PF00637 Clathrin: Region in C 86.2 0.28 6.1E-06 44.7 0.7 86 351-440 13-98 (143)
290 PF07035 Mic1: Colon cancer-as 85.6 28 0.0006 32.3 13.2 134 229-373 14-148 (167)
291 KOG4648 Uncharacterized conser 85.0 2.3 4.9E-05 43.2 6.3 95 555-652 103-200 (536)
292 PF02259 FAT: FAT domain; Int 84.9 43 0.00094 35.5 17.1 147 513-662 145-303 (352)
293 KOG4648 Uncharacterized conser 84.1 3.3 7.1E-05 42.1 7.0 87 521-618 104-199 (536)
294 PF09613 HrpB1_HrpK: Bacterial 84.0 2.6 5.7E-05 38.4 5.8 47 631-677 24-70 (160)
295 COG3629 DnrI DNA-binding trans 83.7 3.9 8.4E-05 41.3 7.4 60 620-679 156-215 (280)
296 PRK12798 chemotaxis protein; R 83.4 68 0.0015 34.3 22.7 206 496-728 125-348 (421)
297 TIGR02561 HrpB1_HrpK type III 82.8 3.1 6.7E-05 37.3 5.5 53 629-681 22-74 (153)
298 PF10602 RPN7: 26S proteasome 82.6 22 0.00047 33.6 11.7 92 518-611 40-139 (177)
299 PF08631 SPO22: Meiosis protei 82.5 62 0.0013 33.2 22.1 21 658-678 253-273 (278)
300 COG3947 Response regulator con 82.1 45 0.00096 33.7 13.6 56 624-679 286-341 (361)
301 KOG4570 Uncharacterized conser 81.9 7 0.00015 39.4 8.2 101 478-578 59-164 (418)
302 PF07035 Mic1: Colon cancer-as 81.9 44 0.00095 31.0 15.3 37 266-302 16-52 (167)
303 PF00637 Clathrin: Region in C 81.6 1.3 2.9E-05 40.1 3.1 85 452-539 11-95 (143)
304 KOG2114 Vacuolar assembly/sort 80.1 1.3E+02 0.0028 35.2 27.4 111 85-205 340-458 (933)
305 COG1747 Uncharacterized N-term 79.8 1E+02 0.0022 33.8 18.2 159 446-611 64-231 (711)
306 KOG3364 Membrane protein invol 79.7 13 0.00029 32.7 8.1 49 632-680 50-100 (149)
307 PRK10941 hypothetical protein; 79.6 8.8 0.00019 38.9 8.3 62 619-680 183-244 (269)
308 PF00515 TPR_1: Tetratricopept 79.3 3.3 7.2E-05 26.4 3.6 32 413-447 2-33 (34)
309 PF14853 Fis1_TPR_C: Fis1 C-te 79.3 7.9 0.00017 28.0 5.7 49 655-729 5-53 (53)
310 KOG0276 Vesicle coat complex C 79.2 17 0.00036 40.3 10.5 100 391-508 647-746 (794)
311 COG4649 Uncharacterized protei 78.5 20 0.00043 33.1 9.1 48 393-440 70-122 (221)
312 PF13170 DUF4003: Protein of u 78.5 66 0.0014 33.3 14.5 62 531-592 79-148 (297)
313 KOG1550 Extracellular protein 78.4 1.2E+02 0.0027 34.6 18.1 78 600-680 454-538 (552)
314 PF04097 Nic96: Nup93/Nic96; 78.1 1.4E+02 0.0031 34.6 24.2 63 183-245 116-188 (613)
315 smart00028 TPR Tetratricopepti 77.9 4 8.8E-05 24.7 3.7 31 619-649 3-33 (34)
316 PF13374 TPR_10: Tetratricopep 77.8 4 8.7E-05 27.3 3.9 27 619-645 4-30 (42)
317 PF14853 Fis1_TPR_C: Fis1 C-te 77.8 3.6 7.9E-05 29.7 3.6 34 622-655 6-39 (53)
318 TIGR02508 type_III_yscG type I 77.4 17 0.00036 30.1 7.5 59 491-552 47-105 (115)
319 cd00923 Cyt_c_Oxidase_Va Cytoc 77.3 19 0.00042 29.6 7.8 63 529-593 22-84 (103)
320 PF10345 Cohesin_load: Cohesin 77.3 1.5E+02 0.0032 34.5 34.9 158 179-337 60-252 (608)
321 PF10602 RPN7: 26S proteasome 77.2 20 0.00044 33.8 9.6 93 484-576 37-140 (177)
322 KOG0276 Vesicle coat complex C 76.2 17 0.00038 40.1 9.6 98 290-405 648-745 (794)
323 PF02284 COX5A: Cytochrome c o 75.9 18 0.00039 30.1 7.4 60 532-593 28-87 (108)
324 PF13929 mRNA_stabil: mRNA sta 75.8 96 0.0021 31.5 14.6 56 479-534 198-258 (292)
325 KOG4570 Uncharacterized conser 75.3 8.4 0.00018 38.9 6.5 101 173-274 59-165 (418)
326 PF02259 FAT: FAT domain; Int 75.2 78 0.0017 33.6 15.0 64 616-679 145-212 (352)
327 PF13174 TPR_6: Tetratricopept 74.9 4.3 9.4E-05 25.4 3.2 27 623-649 6-32 (33)
328 PF07719 TPR_2: Tetratricopept 74.1 4.3 9.2E-05 25.7 3.0 30 517-548 4-33 (34)
329 KOG1498 26S proteasome regulat 73.9 1.3E+02 0.0027 32.0 15.0 109 590-702 136-263 (439)
330 KOG0376 Serine-threonine phosp 73.7 4.8 0.0001 43.2 4.7 84 595-678 14-99 (476)
331 KOG1464 COP9 signalosome, subu 73.6 48 0.001 32.9 11.0 177 394-570 40-252 (440)
332 KOG1586 Protein required for f 73.0 98 0.0021 30.3 13.0 23 628-650 165-187 (288)
333 COG4785 NlpI Lipoprotein NlpI, 72.7 8.3 0.00018 36.8 5.5 90 559-651 75-167 (297)
334 PF13374 TPR_10: Tetratricopep 72.4 4.1 8.9E-05 27.2 2.8 29 652-680 3-31 (42)
335 PF07721 TPR_4: Tetratricopept 72.2 3 6.5E-05 24.9 1.7 23 653-675 3-25 (26)
336 COG4649 Uncharacterized protei 71.5 87 0.0019 29.1 15.1 120 525-645 69-195 (221)
337 KOG0545 Aryl-hydrocarbon recep 71.3 39 0.00086 33.1 9.7 55 626-680 239-293 (329)
338 PF11207 DUF2989: Protein of u 71.2 15 0.00032 35.1 6.8 75 596-671 118-198 (203)
339 PF06552 TOM20_plant: Plant sp 71.2 13 0.00029 34.5 6.4 43 633-682 96-138 (186)
340 PF13181 TPR_8: Tetratricopept 71.1 5.2 0.00011 25.4 2.9 29 652-680 2-30 (34)
341 KOG1308 Hsp70-interacting prot 69.1 3.3 7.2E-05 42.3 2.3 88 598-685 127-216 (377)
342 TIGR02508 type_III_yscG type I 68.9 49 0.0011 27.5 8.3 78 260-340 21-98 (115)
343 PF13431 TPR_17: Tetratricopep 68.4 7.1 0.00015 25.1 3.0 24 378-401 10-33 (34)
344 COG2976 Uncharacterized protei 68.3 1.1E+02 0.0024 29.1 12.9 89 556-649 96-191 (207)
345 KOG0403 Neoplastic transformat 67.9 1.5E+02 0.0032 32.0 13.6 71 487-561 513-586 (645)
346 PF15161 Neuropep_like: Neurop 66.9 2.2 4.8E-05 30.2 0.4 18 775-793 11-28 (65)
347 cd00923 Cyt_c_Oxidase_Va Cytoc 66.3 36 0.00078 28.1 7.1 60 225-286 23-83 (103)
348 PF06552 TOM20_plant: Plant sp 65.5 1.2E+02 0.0026 28.5 11.5 31 531-563 52-83 (186)
349 KOG1550 Extracellular protein 64.7 1.1E+02 0.0024 34.9 13.8 43 464-509 228-275 (552)
350 PF09986 DUF2225: Uncharacteri 64.3 21 0.00046 34.8 6.8 63 618-680 119-194 (214)
351 PF11207 DUF2989: Protein of u 64.2 53 0.0011 31.4 9.0 73 531-604 123-197 (203)
352 PF13174 TPR_6: Tetratricopept 64.0 5.7 0.00012 24.9 1.9 28 653-680 2-29 (33)
353 PF11838 ERAP1_C: ERAP1-like C 63.9 1.9E+02 0.0041 30.2 15.3 84 563-646 144-230 (324)
354 PF13929 mRNA_stabil: mRNA sta 63.4 67 0.0015 32.6 10.0 110 530-639 144-260 (292)
355 PF13762 MNE1: Mitochondrial s 63.2 59 0.0013 29.3 8.7 89 169-257 28-128 (145)
356 PRK13800 putative oxidoreducta 63.1 3.6E+02 0.0078 33.1 24.9 254 300-577 625-880 (897)
357 COG4455 ImpE Protein of avirul 63.1 17 0.00037 34.9 5.5 64 589-652 5-70 (273)
358 KOG0403 Neoplastic transformat 63.0 2.2E+02 0.0049 30.7 17.7 71 385-460 513-586 (645)
359 KOG0890 Protein kinase of the 62.2 5.2E+02 0.011 34.6 30.1 278 384-681 1423-1732(2382)
360 COG1747 Uncharacterized N-term 62.1 2.5E+02 0.0055 31.0 22.8 158 412-577 66-233 (711)
361 KOG4234 TPR repeat-containing 62.0 89 0.0019 29.8 9.8 27 625-651 176-202 (271)
362 KOG1586 Protein required for f 61.4 1.7E+02 0.0037 28.8 16.0 57 596-652 165-230 (288)
363 PF02284 COX5A: Cytochrome c o 61.2 42 0.00091 28.0 6.7 47 227-273 28-74 (108)
364 PRK15180 Vi polysaccharide bio 59.9 56 0.0012 35.2 9.1 119 528-651 303-425 (831)
365 TIGR02561 HrpB1_HrpK type III 59.6 1.4E+02 0.003 27.1 10.8 66 561-629 22-89 (153)
366 PRK11619 lytic murein transgly 59.4 3.5E+02 0.0075 31.7 36.2 76 181-258 102-177 (644)
367 PF04190 DUF410: Protein of un 58.9 2.1E+02 0.0045 29.0 13.3 81 548-645 89-169 (260)
368 PF09477 Type_III_YscG: Bacter 58.9 52 0.0011 27.7 6.9 78 464-544 22-99 (116)
369 PF13934 ELYS: Nuclear pore co 57.3 1.3E+02 0.0027 29.8 10.9 73 555-631 114-186 (226)
370 PHA02875 ankyrin repeat protei 57.3 1.1E+02 0.0024 33.5 11.8 77 121-203 10-90 (413)
371 KOG0292 Vesicle coat complex C 56.8 16 0.00035 42.2 4.9 95 555-673 626-720 (1202)
372 COG2909 MalT ATP-dependent tra 56.7 4.1E+02 0.0088 31.6 19.7 255 419-690 367-657 (894)
373 PRK15180 Vi polysaccharide bio 56.1 83 0.0018 34.0 9.6 129 561-694 301-432 (831)
374 KOG4642 Chaperone-dependent E3 56.1 33 0.00072 33.5 6.2 80 600-679 25-106 (284)
375 PF04910 Tcf25: Transcriptiona 55.9 93 0.002 33.3 10.4 113 551-679 42-167 (360)
376 PF14427 Pput2613-deam: Pput_2 55.1 30 0.00064 28.9 4.9 59 746-804 44-102 (118)
377 PRK13800 putative oxidoreducta 54.8 4.9E+02 0.011 32.0 23.4 46 378-423 632-677 (897)
378 PHA02875 ankyrin repeat protei 54.7 3.2E+02 0.0069 29.8 16.7 197 67-279 18-230 (413)
379 PRK13342 recombination factor 54.4 2.3E+02 0.005 31.0 13.6 100 241-358 173-278 (413)
380 PF11768 DUF3312: Protein of u 53.7 1.1E+02 0.0024 34.1 10.4 24 487-510 412-435 (545)
381 PF09477 Type_III_YscG: Bacter 53.1 1.2E+02 0.0027 25.6 8.2 80 258-340 20-99 (116)
382 PF10366 Vps39_1: Vacuolar sor 51.9 72 0.0016 27.2 7.1 27 516-542 41-67 (108)
383 KOG1258 mRNA processing protei 51.1 4.1E+02 0.0089 30.0 27.2 377 180-561 47-487 (577)
384 PF09670 Cas_Cas02710: CRISPR- 50.5 2.1E+02 0.0046 30.8 12.2 51 526-577 143-197 (379)
385 smart00386 HAT HAT (Half-A-TPR 49.3 22 0.00047 21.9 2.8 29 631-659 1-29 (33)
386 PF07720 TPR_3: Tetratricopept 49.2 31 0.00067 22.6 3.4 30 620-649 4-35 (36)
387 KOG3824 Huntingtin interacting 48.9 21 0.00047 35.9 3.9 60 596-655 127-188 (472)
388 PRK09169 hypothetical protein; 48.5 8.3E+02 0.018 32.8 40.1 330 344-673 287-688 (2316)
389 PF00244 14-3-3: 14-3-3 protei 48.4 2.4E+02 0.0051 28.1 11.3 162 520-682 7-200 (236)
390 COG2976 Uncharacterized protei 47.7 2.6E+02 0.0056 26.7 13.5 89 252-340 97-189 (207)
391 PF13762 MNE1: Mitochondrial s 47.6 2.1E+02 0.0046 25.9 9.6 77 282-358 42-128 (145)
392 KOG4507 Uncharacterized conser 47.5 50 0.0011 36.6 6.6 97 561-660 619-719 (886)
393 PF14561 TPR_20: Tetratricopep 47.4 24 0.00053 28.9 3.5 42 638-679 9-50 (90)
394 PF07163 Pex26: Pex26 protein; 46.4 2E+02 0.0044 29.1 10.0 88 521-611 90-184 (309)
395 PF10579 Rapsyn_N: Rapsyn N-te 46.1 63 0.0014 25.6 5.2 43 528-570 20-64 (80)
396 PF12862 Apc5: Anaphase-promot 46.0 38 0.00082 28.0 4.5 52 628-679 9-69 (94)
397 PF10579 Rapsyn_N: Rapsyn N-te 44.8 51 0.0011 26.1 4.6 47 561-607 18-65 (80)
398 PF11846 DUF3366: Domain of un 43.9 61 0.0013 31.0 6.3 37 612-648 139-175 (193)
399 KOG3807 Predicted membrane pro 43.7 1.7E+02 0.0037 30.1 9.2 117 520-655 281-400 (556)
400 PF11846 DUF3366: Domain of un 43.6 75 0.0016 30.4 6.9 49 563-611 122-170 (193)
401 KOG0890 Protein kinase of the 43.6 9.8E+02 0.021 32.3 32.8 362 255-658 1394-1796(2382)
402 PF14863 Alkyl_sulf_dimr: Alky 43.4 68 0.0015 28.9 5.9 66 601-669 57-122 (141)
403 PF10366 Vps39_1: Vacuolar sor 42.0 1.2E+02 0.0027 25.8 7.1 28 210-237 40-67 (108)
404 PF11525 CopK: Copper resistan 42.0 10 0.00023 28.5 0.4 20 796-815 8-27 (73)
405 PF07163 Pex26: Pex26 protein; 41.1 1.8E+02 0.004 29.4 8.8 86 215-302 89-181 (309)
406 TIGR01503 MthylAspMut_E methyl 41.0 32 0.0007 37.1 4.0 123 462-591 68-217 (480)
407 TIGR03504 FimV_Cterm FimV C-te 40.7 50 0.0011 22.8 3.6 24 520-543 5-28 (44)
408 PF14561 TPR_20: Tetratricopep 40.3 1.6E+02 0.0034 24.1 7.2 62 616-677 21-85 (90)
409 KOG1464 COP9 signalosome, subu 40.2 4E+02 0.0086 26.8 15.9 187 425-611 40-258 (440)
410 TIGR03504 FimV_Cterm FimV C-te 39.5 53 0.0012 22.7 3.6 24 215-238 5-28 (44)
411 COG4976 Predicted methyltransf 39.5 40 0.00087 32.7 4.0 59 594-652 4-64 (287)
412 PF11848 DUF3368: Domain of un 39.3 91 0.002 21.9 4.9 35 218-252 11-45 (48)
413 KOG2063 Vacuolar assembly/sort 39.2 7.7E+02 0.017 29.8 19.0 130 211-357 506-638 (877)
414 cd08819 CARD_MDA5_2 Caspase ac 38.8 1.5E+02 0.0031 24.1 6.4 38 495-533 48-85 (88)
415 PRK10564 maltose regulon perip 38.5 51 0.0011 33.6 4.8 40 212-251 260-299 (303)
416 KOG4077 Cytochrome c oxidase, 38.2 1.8E+02 0.0039 25.5 7.2 59 532-592 67-125 (149)
417 PRK10941 hypothetical protein; 38.1 1.4E+02 0.003 30.4 7.9 67 589-655 185-253 (269)
418 COG4941 Predicted RNA polymera 37.8 5E+02 0.011 27.2 11.4 120 529-652 271-400 (415)
419 PHA03100 ankyrin repeat protei 37.7 6.1E+02 0.013 28.2 14.2 228 130-369 48-304 (480)
420 KOG2034 Vacuolar sorting prote 37.7 7.8E+02 0.017 29.4 22.4 50 384-438 507-556 (911)
421 smart00638 LPD_N Lipoprotein N 36.8 7.1E+02 0.015 28.6 19.5 269 162-458 294-573 (574)
422 PF04910 Tcf25: Transcriptiona 36.8 5.5E+02 0.012 27.4 17.4 89 556-648 110-224 (360)
423 PF15469 Sec5: Exocyst complex 36.5 3.2E+02 0.007 25.7 9.9 23 555-577 92-114 (182)
424 KOG2300 Uncharacterized conser 35.5 6.5E+02 0.014 27.8 20.0 146 397-542 298-473 (629)
425 KOG2471 TPR repeat-containing 35.2 6.5E+02 0.014 27.8 12.7 60 625-687 214-273 (696)
426 KOG3364 Membrane protein invol 34.9 1.4E+02 0.003 26.6 6.2 31 622-652 76-106 (149)
427 PRK13342 recombination factor 34.7 6.4E+02 0.014 27.5 13.2 47 517-563 230-279 (413)
428 COG2178 Predicted RNA-binding 34.2 3.2E+02 0.0069 26.1 8.8 49 495-543 41-98 (204)
429 PF08311 Mad3_BUB1_I: Mad3/BUB 34.1 1.8E+02 0.004 25.5 7.2 43 635-677 81-125 (126)
430 cd08819 CARD_MDA5_2 Caspase ac 33.8 2E+02 0.0044 23.3 6.5 67 162-230 21-87 (88)
431 KOG2063 Vacuolar assembly/sort 32.7 9.7E+02 0.021 29.0 16.7 128 112-256 506-638 (877)
432 PF11663 Toxin_YhaV: Toxin wit 32.5 45 0.00097 29.4 2.9 34 524-559 105-138 (140)
433 KOG3824 Huntingtin interacting 32.2 57 0.0012 33.1 3.9 51 627-677 126-176 (472)
434 TIGR02270 conserved hypothetic 32.1 7E+02 0.015 27.2 24.8 47 276-322 97-143 (410)
435 PF12862 Apc5: Anaphase-promot 31.7 1.2E+02 0.0027 24.9 5.4 27 621-647 45-71 (94)
436 cd00280 TRFH Telomeric Repeat 31.6 1.8E+02 0.0038 27.5 6.6 30 623-653 117-146 (200)
437 KOG2422 Uncharacterized conser 31.5 4.8E+02 0.01 29.4 10.9 132 559-690 248-418 (665)
438 KOG3507 DNA-directed RNA polym 31.0 17 0.00036 26.4 0.0 11 776-786 19-29 (62)
439 COG4976 Predicted methyltransf 30.2 73 0.0016 31.0 4.1 56 627-682 5-60 (287)
440 PF10345 Cohesin_load: Cohesin 29.9 9.3E+02 0.02 27.9 33.1 47 496-542 547-605 (608)
441 PF14669 Asp_Glu_race_2: Putat 29.8 5E+02 0.011 24.8 14.3 58 453-510 137-208 (233)
442 PF08311 Mad3_BUB1_I: Mad3/BUB 29.6 3.4E+02 0.0074 23.8 8.1 42 532-573 81-123 (126)
443 COG0790 FOG: TPR repeat, SEL1 29.4 6.2E+02 0.014 25.8 17.3 47 632-681 206-267 (292)
444 KOG2659 LisH motif-containing 29.3 3.3E+02 0.0072 26.7 8.4 91 517-610 29-128 (228)
445 PRK12356 glutaminase; Reviewed 29.1 5.4E+02 0.012 26.9 10.4 110 500-612 140-258 (319)
446 PF12968 DUF3856: Domain of Un 28.9 3.9E+02 0.0085 23.3 10.1 20 658-677 107-126 (144)
447 KOG0991 Replication factor C, 28.6 4.9E+02 0.011 25.7 9.2 32 517-549 242-273 (333)
448 KOG1308 Hsp70-interacting prot 28.5 11 0.00025 38.6 -1.6 100 629-741 126-225 (377)
449 PF06957 COPI_C: Coatomer (COP 28.0 1.1E+02 0.0023 33.3 5.4 44 606-649 287-332 (422)
450 PF08225 Antimicrobial19: Pseu 27.8 35 0.00076 18.9 0.9 10 782-791 11-20 (23)
451 PF13934 ELYS: Nuclear pore co 27.5 6.1E+02 0.013 25.0 13.1 122 487-618 80-205 (226)
452 TIGR02710 CRISPR-associated pr 27.4 7.1E+02 0.015 26.8 11.3 10 663-672 258-267 (380)
453 PF04190 DUF410: Protein of un 27.2 6.6E+02 0.014 25.4 17.4 32 379-410 88-119 (260)
454 PF14689 SPOB_a: Sensor_kinase 27.0 86 0.0019 23.5 3.3 28 210-237 24-51 (62)
455 PF10475 DUF2450: Protein of u 26.7 6.6E+02 0.014 25.9 11.0 54 385-440 102-155 (291)
456 PF14689 SPOB_a: Sensor_kinase 26.7 1.3E+02 0.0027 22.6 4.2 25 552-576 26-50 (62)
457 PF11848 DUF3368: Domain of un 26.6 1.7E+02 0.0036 20.6 4.5 34 320-353 12-45 (48)
458 PF14376 Haem_bd: Haem-binding 26.4 23 0.00049 31.8 0.1 8 778-785 42-49 (137)
459 PRK10564 maltose regulon perip 26.1 91 0.002 31.9 4.2 38 517-554 260-297 (303)
460 PHA02537 M terminase endonucle 26.0 6E+02 0.013 25.1 9.7 25 524-548 93-118 (230)
461 COG2912 Uncharacterized conser 25.9 3.4E+02 0.0073 27.5 8.0 60 621-680 185-244 (269)
462 COG3043 NapB Nitrate reductase 25.5 48 0.001 29.4 1.9 25 771-797 80-104 (155)
463 KOG4279 Serine/threonine prote 25.3 2.6E+02 0.0057 32.3 7.8 28 778-805 489-516 (1226)
464 PF07575 Nucleopor_Nup85: Nup8 24.6 5E+02 0.011 29.9 10.5 56 449-506 406-461 (566)
465 PF12069 DUF3549: Protein of u 24.1 8.6E+02 0.019 25.6 11.4 86 489-576 172-257 (340)
466 smart00777 Mad3_BUB1_I Mad3/BU 24.1 1.8E+02 0.004 25.5 5.2 69 602-676 50-124 (125)
467 COG3947 Response regulator con 23.9 1.7E+02 0.0038 29.7 5.5 57 281-337 281-340 (361)
468 PF12968 DUF3856: Domain of Un 23.7 2.6E+02 0.0057 24.3 5.8 92 121-234 20-125 (144)
469 KOG4077 Cytochrome c oxidase, 23.5 3.9E+02 0.0085 23.5 6.8 46 227-272 67-112 (149)
470 TIGR00686 phnA alkylphosphonat 23.5 31 0.00066 28.9 0.3 31 775-805 17-48 (109)
471 COG5431 Uncharacterized metal- 23.4 24 0.00053 29.0 -0.2 12 808-819 46-57 (117)
472 PF11663 Toxin_YhaV: Toxin wit 23.3 1.1E+02 0.0023 27.2 3.5 32 322-355 107-138 (140)
473 PF11768 DUF3312: Protein of u 23.2 3.8E+02 0.0082 30.1 8.5 57 283-339 412-473 (545)
474 KOG0551 Hsp90 co-chaperone CNS 22.3 2.6E+02 0.0057 29.1 6.5 85 592-676 88-178 (390)
475 PF07064 RIC1: RIC1; InterPro 22.2 8.2E+02 0.018 24.7 14.3 81 391-476 163-248 (258)
476 COG3019 Predicted metal-bindin 21.9 1.8E+02 0.0039 25.9 4.6 45 756-802 9-57 (149)
477 smart00544 MA3 Domain in DAP-5 21.8 4.9E+02 0.011 22.0 7.7 24 417-440 7-30 (113)
478 cd08326 CARD_CASP9 Caspase act 21.3 2.2E+02 0.0048 23.0 4.8 62 163-228 19-80 (84)
479 KOG4718 Non-SMC (structural ma 20.8 89 0.0019 29.7 2.8 12 775-786 179-190 (235)
480 PRK11639 zinc uptake transcrip 20.7 2.2E+02 0.0049 26.5 5.6 61 540-602 17-77 (169)
481 KOG2297 Predicted translation 20.7 8.3E+02 0.018 25.2 9.5 19 311-329 322-340 (412)
482 PRK11639 zinc uptake transcrip 20.6 4.7E+02 0.01 24.4 7.7 55 308-362 23-77 (169)
483 PF01347 Vitellogenin_N: Lipop 20.5 1.4E+03 0.029 26.6 13.9 271 162-458 323-617 (618)
484 PF01147 Crust_neurohorm: Crus 20.2 22 0.00047 27.7 -1.1 14 775-788 18-31 (73)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.3e-150 Score=1345.22 Aligned_cols=772 Identities=40% Similarity=0.735 Sum_probs=760.1
Q ss_pred cCCCCCcccHHHHHHhhc---ChHHHHHHHHHHHHhCCCCChhhhHHHHHHHHccCChHHHHHHhcccCCCCcchHHHHH
Q 003439 41 LENESREIDFDDLFQSCT---KLHHVKRLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISYRNVYTWNSMI 117 (820)
Q Consensus 41 ~~~~~~~~~~~~ll~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li 117 (820)
.+..|+..+|..++++|. .+..+.++|+.+.+.|..+++.++|+|+++|+++|+++.|.++|++|++||+++||++|
T Consensus 80 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li 159 (857)
T PLN03077 80 LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLV 159 (857)
T ss_pred cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHH
Confidence 356789999999999997 78889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCchHHHHHHHHHhhhCCCCCCccccHHHHHhhcCCcc---hHHHHHHHHHhCCCCcHHHHHHHHHHhhcCCCh
Q 003439 118 SVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 194 (820)
Q Consensus 118 ~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~t~~~ll~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 194 (820)
.+|++.|++++|+++|++ |...|+.||.+||+++|++|++.++ +.++|..+++.|+.||+.++|+||++|+++|++
T Consensus 160 ~~~~~~g~~~~A~~~f~~-M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 238 (857)
T PLN03077 160 GGYAKAGYFDEALCLYHR-MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDV 238 (857)
T ss_pred HHHHhCCCHHHHHHHHHH-HHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCH
Confidence 999999999999999999 8899999999999999999998877 999999999999999999999999999999999
Q ss_pred hHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhC
Q 003439 195 NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG 274 (820)
Q Consensus 195 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 274 (820)
++|+++|++|+.||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|+++.|.++|..+.+.|
T Consensus 239 ~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g 318 (857)
T PLN03077 239 VSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG 318 (857)
T ss_pred HHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHH
Q 003439 275 LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 354 (820)
Q Consensus 275 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 354 (820)
+.||..+||+||.+|+++|++++|.++|++|..||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+
T Consensus 319 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a 398 (857)
T PLN03077 319 FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398 (857)
T ss_pred CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHH
Q 003439 355 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 434 (820)
Q Consensus 355 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 434 (820)
|++.|+++.|.++|+.+.+.| +.++..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++
T Consensus 399 ~~~~g~~~~a~~l~~~~~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~l 477 (857)
T PLN03077 399 CACLGDLDVGVKLHELAERKG-LISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIF 477 (857)
T ss_pred HhccchHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCc
Q 003439 435 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS 514 (820)
Q Consensus 435 ~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 514 (820)
|++|.. +++||..||+++|.+|++.|+++.++++|..+.+.|+.++..++|+||++|+|+|++++|.++|+++ .+|+
T Consensus 478 f~~m~~--~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~ 554 (857)
T PLN03077 478 FRQMLL--TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDV 554 (857)
T ss_pred HHHHHh--CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCCh
Confidence 999975 5999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred cccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHH
Q 003439 515 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 594 (820)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 594 (820)
++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~ 634 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL 634 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred HHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHH
Q 003439 595 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR 674 (820)
Q Consensus 595 ~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 674 (820)
|+|+|++++|.+++++|+++||..+|++|+++|..+|+.+.|+.+.+++++++|++++.|+.|+++|+..|+|++|.+++
T Consensus 635 l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr 714 (857)
T PLN03077 635 LGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVR 714 (857)
T ss_pred HHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcCCceeEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHHhCCCccCCCcccccCchhhhhhhccccch
Q 003439 675 SLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSE 754 (820)
Q Consensus 675 ~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~hs~ 754 (820)
+.|+++|++|+||+||||+++++|.|.+||.+||+.++||..|+++.++|++.||+||+..++ |++|++||+.|++|||
T Consensus 715 ~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse 793 (857)
T PLN03077 715 KTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSE 793 (857)
T ss_pred HHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccH
Confidence 999999999999999999999999999999999999999999999999999999999999988 5588899999999999
Q ss_pred hHHHHhhhccCCCCCceEEeecccccCCchhHHHHHhhhhCceEEEecCCccccccCCcCCCCC
Q 003439 755 RLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGD 818 (820)
Q Consensus 755 ~la~~~~~~~~~~~~~~~~~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~~~h~f~~g~csc~~ 818 (820)
|||+|||||+||||+||||+||||||+|||+++|||||+++|||||||++|||||+||+|||||
T Consensus 794 ~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 794 RLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.9e-126 Score=1110.53 Aligned_cols=613 Identities=35% Similarity=0.673 Sum_probs=606.0
Q ss_pred CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHH
Q 003439 206 VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG-VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNN 284 (820)
Q Consensus 206 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 284 (820)
.++.++|+++|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.|.++|..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4578899999999999999999999999998765 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhh
Q 003439 285 LINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 364 (820)
Q Consensus 285 li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 364 (820)
|+++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCC
Q 003439 365 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 444 (820)
Q Consensus 365 ~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~ 444 (820)
+++|..+.+.| +.+|..++|+|+++|+++|++++|.++|++|+++|+++||+||.+|+++|+.++|+++|++|.+ .|+
T Consensus 244 ~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~-~g~ 321 (697)
T PLN03081 244 QQLHCCVLKTG-VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD-SGV 321 (697)
T ss_pred HHHHHHHHHhC-CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCC
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHH
Q 003439 445 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCH 524 (820)
Q Consensus 445 ~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 524 (820)
.||..||++++.+|++.|+++.|.++|+.|.+.|+.||..++++||++|+++|++++|.++|++|.++|+++||+||.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHH
Q 003439 525 GIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 604 (820)
Q Consensus 525 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA 604 (820)
+++|+.++|+++|++|.+.|+.||.+||+.++++|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+++|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCCCc
Q 003439 605 HNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK 684 (820)
Q Consensus 605 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~ 684 (820)
.+++++|+.+|+..+|++|+.+|+.+|+++.|+.+++++++++|++...|+.|+++|++.|+|++|.++++.|+++|+++
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHHhCCCccCCCcccccCchhhhhhhccccchhHHHHhhhcc
Q 003439 685 TPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIIS 764 (820)
Q Consensus 685 ~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~hs~~la~~~~~~~ 764 (820)
.||+|||++++.+|.|.+||.+||+.++||.++.++..+|++.||.||+.+++||+++++|++.|++||||||+|||||+
T Consensus 562 ~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~ 641 (697)
T PLN03081 562 HPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLIN 641 (697)
T ss_pred CCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEeecccccCCchhHHHHHhhhhCceEEEecCCccccccCCcCCCCCCC
Q 003439 765 SPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 820 (820)
Q Consensus 765 ~~~~~~~~~~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~~~h~f~~g~csc~~~w 820 (820)
+|||+||||+||||||+|||+++||||+++||||||||++|||||+||+|||||||
T Consensus 642 ~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 642 TSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.3e-84 Score=777.04 Aligned_cols=679 Identities=27% Similarity=0.430 Sum_probs=604.7
Q ss_pred CCCCcchHHHHHHHHHhCCCchHHHHHHHHHhhhCCCCCCccccHHHHHhhcCCcc---hHHHHHHHHHhCCCCcHHHHH
Q 003439 106 SYRNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAA 182 (820)
Q Consensus 106 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~t~~~ll~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~ 182 (820)
+.++..++|.++.+|++.|++++|+.+|++ |...|+.|+..+|..++++|.+.+. |.++|..+.+.|..+++.++|
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~-m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLES-MQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHH-HHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 356778899999999999999999999999 9999999999999999999988776 999999999999999999999
Q ss_pred HHHHHhhcCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHH
Q 003439 183 SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS 262 (820)
Q Consensus 183 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 262 (820)
+||++|+++|+++.|+++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||.+||++++++|+..+++..
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCC
Q 003439 263 GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 342 (820)
Q Consensus 263 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 342 (820)
+.++|..+.+.|+.||..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003439 343 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 422 (820)
Q Consensus 343 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 422 (820)
||..||++++.+|+..|+.+.|+++|..+.+.| +.||..++|+|+++|+++|++++|.++|++|..+|+++||+||.+|
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~ 364 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTG-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC-CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHH
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 003439 423 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 502 (820)
Q Consensus 423 ~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 502 (820)
++.|++++|+++|++|.+ .|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.|+..++|+||++|+++|++++|
T Consensus 365 ~~~g~~~~A~~lf~~M~~-~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 365 EKNGLPDKALETYALMEQ-DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred HhCCCHHHHHHHHHHHHH-hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCC
Q 003439 503 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 582 (820)
Q Consensus 503 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~ 582 (820)
.++|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||.+||+.++.+|++.|.++++.+++..+.+. |+.
T Consensus 444 ~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~ 521 (857)
T PLN03077 444 LEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIG 521 (857)
T ss_pred HHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCC
Confidence 9999999999999999999999999999999999999986 59999999999999999999999999999999865 999
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc--cCCCCcchHHhHHHH
Q 003439 583 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE--VDSENVGYYVLMSNI 660 (820)
Q Consensus 583 p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~ 660 (820)
++..++++|+++|+++|++++|.++|+++ +||.++|++|+.+|.++|+.++|.++|++|.+ +.| |..+|..+...
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a 598 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCA 598 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHH
Confidence 99999999999999999999999999999 89999999999999999999999999999987 557 67778889999
Q ss_pred hhhcCCcchHHHHHHHHH-hCCCCcCCceeEEEECCEEEEEEeCCCCCcccHHHHH---HHHHHHHHHHhCCCccCCCcc
Q 003439 661 YANVGKWEGVDEVRSLAR-DRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD---ELRNLTAKMKSLGYVPDKSFV 736 (820)
Q Consensus 661 y~~~g~~~~A~~~~~~m~-~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~---~l~~l~~~m~~~g~~pd~~~~ 736 (820)
|.+.|++++|.++|+.|. +.|+.|+... .-..-..+. .+++..+.+++++..||...+
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~------------------y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~ 660 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKH------------------YACVVDLLGRAGKLTEAYNFINKMPITPDPAVW 660 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCchHH------------------HHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHH
Confidence 999999999999999999 6787664310 001111111 234455555666789997643
Q ss_pred cccCchhhhhhhcccc---chhHHHHhhhccCCC--CCceEEeecc-cccCCchhHHHHHhhhhCceEEEec-------C
Q 003439 737 LQDVEEDEKEHILTSH---SERLAIAFGIISSPP--KSPIQIFKNL-RVCGDCHNWTKFISQITEREIIVRD-------S 803 (820)
Q Consensus 737 ~~~~~~~~~~~~~~~h---s~~la~~~~~~~~~~--~~~~~~~kn~-r~c~dch~~~k~~s~~~~r~i~~rd-------~ 803 (820)
-.-+.-- +. ... .|+.|. -++...| ......+-|+ --.++...+.|....+..+.+-.-. .
T Consensus 661 ~aLl~ac-~~---~~~~e~~e~~a~--~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~ 734 (857)
T PLN03077 661 GALLNAC-RI---HRHVELGELAAQ--HIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVK 734 (857)
T ss_pred HHHHHHH-HH---cCChHHHHHHHH--HHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEEC
Confidence 2211110 00 000 111111 1222222 2233334454 3467888888888888777543211 3
Q ss_pred CccccccCCcCCC
Q 003439 804 NRFHHFKDGICSC 816 (820)
Q Consensus 804 ~~~h~f~~g~csc 816 (820)
+..|-|..|--|.
T Consensus 735 ~~~~~f~~~d~~h 747 (857)
T PLN03077 735 GKVHAFLTDDESH 747 (857)
T ss_pred CEEEEEecCCCCC
Confidence 6788887765443
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.3e-70 Score=640.92 Aligned_cols=472 Identities=28% Similarity=0.493 Sum_probs=455.5
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHhhhC-CCCCCccccHHHHHhhcCCcc---hHHHHHHHHHhCCCCcHHHHH
Q 003439 107 YRNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTS-GLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAA 182 (820)
Q Consensus 107 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~m~~~-~~~p~~~t~~~ll~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~ 182 (820)
.++.++|+++|.+|.+.|++++|+++|+. |... ++.||..||+++|++|++.+. +.++|..|.+.|+.||+.++|
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~-m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEI-LEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHH-HHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 45788999999999999999999999999 7665 488999999999999998887 899999999999999999999
Q ss_pred HHHHHhhcCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHH
Q 003439 183 SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS 262 (820)
Q Consensus 183 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 262 (820)
.|+++|+++|++++|+++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCC
Q 003439 263 GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 342 (820)
Q Consensus 263 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 342 (820)
+.++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|.++|+++||+||.+|+++|++++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003439 343 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 422 (820)
Q Consensus 343 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 422 (820)
||..||++++.+|++.|.++.|+++|+.+.+.| +++|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g-~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG-FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC-CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHH
Q 003439 423 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK-NCLCFDVFVATCLVDMYGKCGRIDD 501 (820)
Q Consensus 423 ~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~li~~y~~~g~~~~ 501 (820)
++.|+.++|+++|++|.+ .|+.||..||+++|.+|++.|.+++|.++|+.|.+ .|+.|+..+|+++|++|++.|++++
T Consensus 402 ~~~G~~~~A~~lf~~M~~-~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIA-EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HHcCCHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 999999999999999999 99999999999999999999999999999999976 6999999999999999999999999
Q ss_pred HHHHHhhCC-CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhh
Q 003439 502 AMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEF 579 (820)
Q Consensus 502 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 579 (820)
|.++|++|+ .|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|+.|++.|++.|++++|.++++.|.++
T Consensus 481 A~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~- 557 (697)
T PLN03081 481 AYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK- 557 (697)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-
Confidence 999999998 78999999999999999999999999999976 6675 569999999999999999999999999876
Q ss_pred CCCCC
Q 003439 580 GIKPH 584 (820)
Q Consensus 580 g~~p~ 584 (820)
|+++.
T Consensus 558 g~~k~ 562 (697)
T PLN03081 558 GLSMH 562 (697)
T ss_pred CCccC
Confidence 87643
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3e-69 Score=630.42 Aligned_cols=523 Identities=16% Similarity=0.230 Sum_probs=476.5
Q ss_pred CCCCChhhhHHHHHHHHccCChHHHHHHhcccCCCCcc-----hHHHHHHHHHhCCCchHHHHHHHHHhhhCCCCCCccc
Q 003439 74 GKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISYRNVY-----TWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYT 148 (820)
Q Consensus 74 g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~t 148 (820)
...++...+..+++.|+++|++++|.++|+.|+.++.+ .++.++.+|.+.|..++|+.+|+. |.. ||..|
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~-M~~----pd~~T 439 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKL-IRN----PTLST 439 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHH-cCC----CCHHH
Confidence 34577888999999999999999999999999876654 456677889999999999999998 754 99999
Q ss_pred cHHHHHhhcCCcc---hHHHHHHHHHhCCCCcHHHHHHHHHHhhcCCChhHHHHHhccCC----CCCcccHHHHHHHHHh
Q 003439 149 FPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP----VRDSGSWNAMISGYCQ 221 (820)
Q Consensus 149 ~~~ll~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~ 221 (820)
|+.+|++|++.++ |.++|+.|.+.|+.||..+||+||++|+++|++++|.++|++|. .||.++||+||.+|++
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999999999888 99999999999999999999999999999999999999999998 5899999999999999
Q ss_pred CCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHH--hCCCccHHHHHHHHHHHHccCCHHHHH
Q 003439 222 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK--HGLEFNLFVSNNLINMYAKFGMMRHAL 299 (820)
Q Consensus 222 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~ 299 (820)
.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+ .|+.||..+|++||.+|+++|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999987 679999999999999999999999999
Q ss_pred HHHhccCC----CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhC
Q 003439 300 RVFDQMME----RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 375 (820)
Q Consensus 300 ~~f~~m~~----~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 375 (820)
++|+.|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.+++..|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999976 56799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCC----CCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccH
Q 003439 376 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP----VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY 451 (820)
Q Consensus 376 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~ 451 (820)
+.||..+|++||.+|+++|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|.. .|+.||..||
T Consensus 680 -~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~-~Gi~Pd~~Ty 757 (1060)
T PLN03218 680 -IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR-LGLCPNTITY 757 (1060)
T ss_pred -CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHH
Confidence 99999999999999999999999999999995 68999999999999999999999999999999 9999999999
Q ss_pred hhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcCCHHHHHHHHhhCCCCCccccchHHHHHHhc
Q 003439 452 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG----KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 527 (820)
Q Consensus 452 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 527 (820)
++++.+|++.|+++.|.++|..|.+.|+.||..+|++|+.++. +++...++...|+.+...+...|
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w---------- 827 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKW---------- 827 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccch----------
Confidence 9999999999999999999999999999999999999998743 34444444444443333333334
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 003439 528 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 607 (820)
Q Consensus 528 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~ 607 (820)
.++|+.+|++|++.|+.||.+||+.++.++...+..+.+..+++.|... +..|+..+|++||+++++. .++|..+
T Consensus 828 --~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l 902 (1060)
T PLN03218 828 --TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSL 902 (1060)
T ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHH
Confidence 4579999999999999999999999998777888888888888777644 7788889999999988542 4789999
Q ss_pred HHhC---CCCCCHH
Q 003439 608 IQNM---PVRPDAS 618 (820)
Q Consensus 608 ~~~m---~~~p~~~ 618 (820)
+++| ++.|+..
T Consensus 903 ~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 903 LEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHcCCCCCcc
Confidence 9998 5667654
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.1e-66 Score=603.31 Aligned_cols=502 Identities=19% Similarity=0.249 Sum_probs=466.2
Q ss_pred CCcHHHHHHHHHHhhcCCChhHHHHHhccCCCCCccc-----HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHh
Q 003439 175 EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS-----WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 249 (820)
Q Consensus 175 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~-----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 249 (820)
.++...|..+++.|+++|++++|+++|++|+.++.+. ++.++.+|.+.|..++|+++|+.|.. ||..||+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 5678889999999999999999999999999776654 45667789999999999999999974 99999999
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccC----CCCchHHHHHHHHHHhCCC
Q 003439 250 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM----ERDVVSWNSIIAAYEQSND 325 (820)
Q Consensus 250 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~d~~~~~~li~~~~~~g~ 325 (820)
+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||.++||+||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999999999999999999999999999999999997 4899999999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHH--hCCcCcchhHHhHHHHHHHhcCCHHHHHHH
Q 003439 326 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR--RGWFMEDVIIGNAVVDMYAKLGIINSACAV 403 (820)
Q Consensus 326 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~--~g~~~~~~~~~~~li~~y~~~g~~~~A~~~ 403 (820)
+++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+ .| +.||..+|++||++|+++|++++|.++
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g-i~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP-IDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC-CCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999986 56 899999999999999999999999999
Q ss_pred HhcCCCC----CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCC
Q 003439 404 FEGLPVK----DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 479 (820)
Q Consensus 404 f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 479 (820)
|+.|.+. +..+||++|.+|++.|++++|+++|++|.+ .|+.||..||++++.+|++.|++++|.++++.|.+.|+
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~-~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK-KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999754 669999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 003439 480 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVP----RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 555 (820)
Q Consensus 480 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 555 (820)
.|+..+|++||++|+++|++++|.++|++|. .||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999999999999999999995 789999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH----HcC-------------------CHHHHHHHHHhC-
Q 003439 556 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG----RAG-------------------HLGMAHNFIQNM- 611 (820)
Q Consensus 556 l~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~----~~g-------------------~~~eA~~~~~~m- 611 (820)
+.+|++.|++++|.++|..|.+. |+.||..+|++|++++. +++ ..++|..+|++|
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence 99999999999999999999866 99999999999998743 333 246799999999
Q ss_pred --CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc-cCCCCcchHHhHHHHhhhcCCc-chHHHHHHHHHhCCCCcCC
Q 003439 612 --PVRPDASIWGALLGACRIHGNMELGAVASDRLFE-VDSENVGYYVLMSNIYANVGKW-EGVDEVRSLARDRGLKKTP 686 (820)
Q Consensus 612 --~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~y~~~g~~-~~A~~~~~~m~~~~~~~~~ 686 (820)
++.||..+|++++.++...+..+.+..+++.+.. -.+.+..+|..|.+.+ |++ ++|..++++|.+.|+.|+.
T Consensus 840 ~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 840 SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCCCc
Confidence 6899999999999888788888888888876542 3455778889998876 444 5899999999999997765
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.6e-31 Score=326.53 Aligned_cols=605 Identities=12% Similarity=0.051 Sum_probs=362.9
Q ss_pred ChHHHHHHHHHHHHhCCCCChhhhHHHHHHHHccCChHHHHHHhcccCC--CC-cchHHHHHHHHHhCCCchHHHHHHHH
Q 003439 59 KLHHVKRLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISY--RN-VYTWNSMISVYVRCGRLSEAVDCFYQ 135 (820)
Q Consensus 59 ~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~ 135 (820)
....+...+..+.+..... ..........+...|++++|...|+.+.+ |+ ...+..+...+...|++++|...|.+
T Consensus 242 ~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 320 (899)
T TIGR02917 242 EFEEAEKHADALLKKAPNS-PLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQ 320 (899)
T ss_pred CHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6677777776666554322 22222233344566777777777766532 22 23344455566677777777777776
Q ss_pred HhhhCCCCCCc-cccHHHHHhhcCCcc---hHHHHHHHHHhCCCCcHHHHHHHHHHhhcCCChhHHHHHhccCCC---CC
Q 003439 136 FTLTSGLRPDF-YTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPV---RD 208 (820)
Q Consensus 136 ~m~~~~~~p~~-~t~~~ll~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~ 208 (820)
.+.. .|+. ..+..+.......++ +.+.+..+.+.. +.+..+++.+...|.+.|++++|.+.|+++.. .+
T Consensus 321 ~~~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 396 (899)
T TIGR02917 321 ILKY---APNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPEN 396 (899)
T ss_pred HHHh---CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 2222 2322 223333333333333 555555555443 34566667777777777777777777776542 23
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHH
Q 003439 209 SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 288 (820)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 288 (820)
...|..+...+...|++++|++.|+++.+.... +......++..+...|+.++|..++..+.+.. +.+..++..+...
T Consensus 397 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 474 (899)
T TIGR02917 397 AAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAI 474 (899)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHH
Confidence 445666666677777777777777776654322 12333445556666677777777766665543 3455566666667
Q ss_pred HHccCCHHHHHHHHhccCC---CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhh
Q 003439 289 YAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 365 (820)
Q Consensus 289 y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 365 (820)
|...|++++|...|+++.+ .+...+..+...+...|++++|.+.|+++...+ +.+..++..+...+...|+.+.+.
T Consensus 475 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 553 (899)
T TIGR02917 475 YLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAV 553 (899)
T ss_pred HHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777766533 244456666666666777777777777666542 224445566666666666666676
Q ss_pred hHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHhhhhcC
Q 003439 366 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV---KDVISWNTLITGYAQNGLASEAIEVFQMMEECN 442 (820)
Q Consensus 366 ~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 442 (820)
..+..+.+.+ +.+...+..++..|.+.|++++|..+++.+.. .+...|..+...|.+.|++++|+..|+++.+
T Consensus 554 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-- 629 (899)
T TIGR02917 554 AWLEKAAELN--PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA-- 629 (899)
T ss_pred HHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 6666666554 44555566666666677777777666666542 2455666666666666777777777666655
Q ss_pred CCCC-CcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccc
Q 003439 443 EINP-NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWN 518 (820)
Q Consensus 443 g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~ 518 (820)
..| +...+..+...+...|++++|..+++.+.+.. +.+...+..++..+.+.|++++|.++++.+. +.+...|.
T Consensus 630 -~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 707 (899)
T TIGR02917 630 -LQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFE 707 (899)
T ss_pred -hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHH
Confidence 223 33345555566666666777766666666543 2245566666666666666666666666665 22334455
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHc
Q 003439 519 AIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 598 (820)
Q Consensus 519 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 598 (820)
.+...+...|++++|++.|+++... .|+..++..+..++.+.|++++|.+.++.+.+. .+.+...+..+...|.+.
T Consensus 708 ~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~ 783 (899)
T TIGR02917 708 LEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQ 783 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC
Confidence 6666666666666666666666663 354455556666666666666666666666542 233455666666666666
Q ss_pred CCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHH
Q 003439 599 GHLGMAHNFIQNM-PV-RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 676 (820)
Q Consensus 599 g~~~eA~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 676 (820)
|+.++|.+.|+++ .. +++..+++.+...+...|+ .+|+..+++++++.|+++..+..++.+|...|++++|.+++++
T Consensus 784 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 862 (899)
T TIGR02917 784 KDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRK 862 (899)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666665 22 2345566666666666666 5566666666666666666666666666666666666666666
Q ss_pred HHhCCC
Q 003439 677 ARDRGL 682 (820)
Q Consensus 677 m~~~~~ 682 (820)
+.+.+.
T Consensus 863 a~~~~~ 868 (899)
T TIGR02917 863 AVNIAP 868 (899)
T ss_pred HHhhCC
Confidence 665543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.5e-31 Score=322.66 Aligned_cols=606 Identities=11% Similarity=0.051 Sum_probs=476.3
Q ss_pred ChHHHHHHHHHHHHhCCCCChhhhHHHHHHHHccCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCCchHHHHHHHH
Q 003439 59 KLHHVKRLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISY---RNVYTWNSMISVYVRCGRLSEAVDCFYQ 135 (820)
Q Consensus 59 ~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 135 (820)
+...+..+...+.... ..+...+..+...+.+.|+++.|...|+.... .+..+|..++..+...|++++|...++.
T Consensus 174 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 252 (899)
T TIGR02917 174 RFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADA 252 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5666666665555432 23445555666666666666666666665421 2445556666666666666666666655
Q ss_pred HhhhCC--------------------------------CCCCccccHHHH-HhhcCCcc---hHHHHHHHHHhCCCCcHH
Q 003439 136 FTLTSG--------------------------------LRPDFYTFPPVL-KACRNLVD---GKKIHCSVLKLGFEWDVF 179 (820)
Q Consensus 136 ~m~~~~--------------------------------~~p~~~t~~~ll-~~~~~~~~---~~~~~~~~~~~g~~~~~~ 179 (820)
+.+.. ..|+.......+ ..+...++ +...+..+++.. +.+..
T Consensus 253 -~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~ 330 (899)
T TIGR02917 253 -LLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQ 330 (899)
T ss_pred -HHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 32211 112111000000 11112222 555555555543 34566
Q ss_pred HHHHHHHHhhcCCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhc
Q 003439 180 VAASLLHMYCRFGLANVARKLFDDMPV---RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 256 (820)
Q Consensus 180 ~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 256 (820)
.+..+...+.+.|++++|...++.+.. .+...|+.+...+.+.|++++|.++|+++.+.. +.+...+..+...+..
T Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 409 (899)
T TIGR02917 331 ARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLS 409 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Confidence 777888888899999999998887753 355678888899999999999999999987653 2245566777778888
Q ss_pred CCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCC---CCchHHHHHHHHHHhCCChhhHHHHH
Q 003439 257 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFF 333 (820)
Q Consensus 257 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~ 333 (820)
.|+.++|...+..+.+... ........++..|.+.|+.++|..+++.+.. .+..+|+.+...|...|++++|.+.|
T Consensus 410 ~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 488 (899)
T TIGR02917 410 QGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAF 488 (899)
T ss_pred CCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999887653 2345666788899999999999999998865 46778999999999999999999999
Q ss_pred HHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCC---C
Q 003439 334 TTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV---K 410 (820)
Q Consensus 334 ~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~ 410 (820)
+++.+.. +.+...+..+...+...|+.+.|.+.+..+.+.+ +.+..++..+...|.+.|+.++|...|+++.. .
T Consensus 489 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 565 (899)
T TIGR02917 489 EKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ 565 (899)
T ss_pred HHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9998753 2344567778888999999999999999999875 66788999999999999999999999998743 3
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 003439 411 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 490 (820)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 490 (820)
+...+..++..|.+.|++++|+.+++++.. ..+.+..++..+...+...|++++|...++.+.+.. +.+...+..+.
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 642 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAAD--AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLA 642 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 567788899999999999999999999976 234456778889999999999999999999998865 34667888999
Q ss_pred HHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 003439 491 DMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSE 567 (820)
Q Consensus 491 ~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 567 (820)
..|.+.|++++|..+|+++. +.+..+|..++..+...|++++|.++++.+.+.+ +++...+..+...+...|++++
T Consensus 643 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 643 DAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999876 4556789999999999999999999999999864 4456788888899999999999
Q ss_pred HHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 003439 568 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-P-VRPDASIWGALLGACRIHGNMELGAVASDRLFE 645 (820)
Q Consensus 568 a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 645 (820)
|.+.|+.+.. ..|+..++..++.+|.+.|+.++|.+.++++ . .+.+..++..+...|...|+.++|+..++++++
T Consensus 722 A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 722 AIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999884 4576688888999999999999999999887 3 334567899999999999999999999999999
Q ss_pred cCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 646 VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 646 ~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
..|+++..+..++++|...|+ ++|..+++++.+.
T Consensus 799 ~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 799 KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 999999999999999999999 8899999998775
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=9.9e-36 Score=255.33 Aligned_cols=106 Identities=64% Similarity=1.027 Sum_probs=98.0
Q ss_pred ceeEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHHhCCCccCCCcccccCchhhh--------hhhccccchhHHH
Q 003439 687 GWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEK--------EHILTSHSERLAI 758 (820)
Q Consensus 687 ~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~hs~~la~ 758 (820)
|+||+++ |.|.+||.+||+. ++..++...||.|++..++|+++++++ +.++++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7899877 9999999999987 556677888999999999998887765 6689999999999
Q ss_pred HhhhccCCCCCceEEeecc-cccCCchhHHHHHhhhhCceEEEecCCcccccc
Q 003439 759 AFGIISSPPKSPIQIFKNL-RVCGDCHNWTKFISQITEREIIVRDSNRFHHFK 810 (820)
Q Consensus 759 ~~~~~~~~~~~~~~~~kn~-r~c~dch~~~k~~s~~~~r~i~~rd~~~~h~f~ 810 (820)
||||+++ ||+||+ |||+|||+|+|+||+++||+|||||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 999999 999999999999999999999999999999997
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=2e-22 Score=247.36 Aligned_cols=601 Identities=12% Similarity=0.072 Sum_probs=440.0
Q ss_pred ChHHHHHHHHHHHHhCCCCChhhhHHHHHHHHccCChHHHHHHhcccCC--CCc-chH----------------HHHHHH
Q 003439 59 KLHHVKRLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISY--RNV-YTW----------------NSMISV 119 (820)
Q Consensus 59 ~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~--~~~-~~~----------------~~li~~ 119 (820)
+.+.+++....+...- ..|+.++..+...+.+.|+.++|.+.++...+ |+. ..+ ..+...
T Consensus 43 ~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~l 121 (1157)
T PRK11447 43 REDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARL 121 (1157)
T ss_pred ChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 6777777777665432 23567778888889999999999999998743 332 221 233446
Q ss_pred HHhCCCchHHHHHHHHHhhhCCCCCCccccHH-HHHhhc-CCcc---hHHHHHHHHHhCCCCcHHHHHHHHHHhhcCCCh
Q 003439 120 YVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPP-VLKACR-NLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 194 (820)
Q Consensus 120 ~~~~g~~~~A~~l~~~~m~~~~~~p~~~t~~~-ll~~~~-~~~~---~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 194 (820)
+.+.|++++|++.|++ ... +-+|+ ..... ...... ..+. |.+.++.+++.. +.++..+..+...+...|+.
T Consensus 122 l~~~g~~~eA~~~~~~-~l~-~~p~~-~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 122 LATTGRTEEALASYDK-LFN-GAPPE-LDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRR 197 (1157)
T ss_pred HHhCCCHHHHHHHHHH-Hcc-CCCCC-hHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCH
Confidence 8899999999999998 432 22333 22111 112221 1222 778888887774 55677888999999999999
Q ss_pred hHHHHHhccCCCCCc------ccH-----------------HHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHH
Q 003439 195 NVARKLFDDMPVRDS------GSW-----------------NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 251 (820)
Q Consensus 195 ~~A~~~f~~m~~~~~------~~~-----------------~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 251 (820)
++|.+.|+++..... ..| ...+..+-.....+.|...+.++......|+... ...-
T Consensus 198 ~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G 276 (1157)
T PRK11447 198 DEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQG 276 (1157)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHH
Confidence 999999998753211 111 1111112222234455566655544333333222 1223
Q ss_pred HhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCC--CCc---hHHHHH----------
Q 003439 252 PVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME--RDV---VSWNSI---------- 316 (820)
Q Consensus 252 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~d~---~~~~~l---------- 316 (820)
.++...|++++|...++..++.. +.+..++..|...|.+.|+.++|+..|++..+ |+. ..|..+
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 45667899999999999999875 34778899999999999999999999998754 321 223222
Q ss_pred --HHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhc
Q 003439 317 --IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL 394 (820)
Q Consensus 317 --i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~ 394 (820)
...+.+.|++++|+..|++..+.. +.+...+..+...+...|+.+.|.+.+..+++.. +.+...+..+...|. .
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH-h
Confidence 345678999999999999998863 2244566778889999999999999999999875 555667777777775 4
Q ss_pred CCHHHHHHHHhcCCCCC------------chHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCc-ccHhhHHHHhhcc
Q 003439 395 GIINSACAVFEGLPVKD------------VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ-GTYVSILPAYSHV 461 (820)
Q Consensus 395 g~~~~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~a~~~~ 461 (820)
++.++|...++.+.... ...+..+...+...|++++|++.|++..+ ..|+. ..+..+...+.+.
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~---~~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA---LDPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHc
Confidence 67899999998876432 22345566778899999999999999987 66754 4556777889999
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc-------------ccchHHHHHHhcC
Q 003439 462 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV-------------PWNAIISCHGIHG 528 (820)
Q Consensus 462 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-------------~~~~li~~~~~~g 528 (820)
|++++|...++.+++... .+...+..+...+.+.|+.++|...++.+...... .+..+...+...|
T Consensus 509 G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 999999999999987543 24444555556678899999999999988733210 1224566788999
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHH
Q 003439 529 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNF 607 (820)
Q Consensus 529 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~ 607 (820)
+.++|+++++. .+++...+..+...+.+.|++++|++.|+...+. .| +...+..++.+|...|++++|++.
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999872 2345557778888999999999999999998853 45 567888999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc------hHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 608 IQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG------YYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 608 ~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
++.. ...|+ ..++..+..++...|+.++|...++++++..|+++. .+..++.++...|++++|...++++..
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9987 34554 557888888999999999999999999998776543 455679999999999999999988853
Q ss_pred -CCC
Q 003439 680 -RGL 682 (820)
Q Consensus 680 -~~~ 682 (820)
.|+
T Consensus 740 ~~~~ 743 (1157)
T PRK11447 740 ASGI 743 (1157)
T ss_pred hcCC
Confidence 344
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=1.9e-22 Score=247.59 Aligned_cols=581 Identities=11% Similarity=0.043 Sum_probs=420.2
Q ss_pred HHHHHHccCChHHHHHHhcccC--C-CCcchHHHHHHHHHhCCCchHHHHHHHHHhhhCCCCCCccccHH----------
Q 003439 85 LVNFYANLGDLSFSRHTFDHIS--Y-RNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPP---------- 151 (820)
Q Consensus 85 ll~~y~~~g~~~~A~~~f~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~t~~~---------- 151 (820)
.++.+...++.+.|++.++++. . .|...+..++..+.+.|+.++|.+.+++ ..+ +.|+...+..
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~-l~~--~~P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDR-LSQ--LAPDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH-HHh--hCCCChHHHHHHHHHHhcCC
Confidence 3556677899999999988763 2 3567788899999999999999999998 333 3455443321
Q ss_pred -----H--HHhhcCCcc---hHHHHHHHHHhCCCCcHHHH-HHHHHHhhcCCChhHHHHHhccCCC--C-CcccHHHHHH
Q 003439 152 -----V--LKACRNLVD---GKKIHCSVLKLGFEWDVFVA-ASLLHMYCRFGLANVARKLFDDMPV--R-DSGSWNAMIS 217 (820)
Q Consensus 152 -----l--l~~~~~~~~---~~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~ 217 (820)
+ -+.+...+. |.+.+..+.+.. +++.... ..+.......|+.++|++.|+++.. | +...+..+..
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ 189 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLAL 189 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 1 112333333 777777776543 3333221 1112222345899999999998874 3 4557888889
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCC----------------Ch---HHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCcc
Q 003439 218 GYCQSGNAVEALDILDEMRLEGVSM----------------DP---ITVASILPVCARSDNILSGLLIHLYIVKHGLEFN 278 (820)
Q Consensus 218 ~~~~~g~~~~A~~l~~~m~~~g~~p----------------~~---~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 278 (820)
.+.+.|+.++|+..++++.+..... +. ..+...+..+-.......+...+....+....|+
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 9999999999999999986532110 00 0111112222222234445555554444333333
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHhccCC--C-CchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCc-chHH-----
Q 003439 279 LFVSNNLINMYAKFGMMRHALRVFDQMME--R-DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL-LTLV----- 349 (820)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~----- 349 (820)
.. ...+...+...|++++|+..|++..+ | +...+..|...|.+.|++++|+..|++..+....... ..+.
T Consensus 270 ~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 270 FR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred hH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 22 22345667889999999999998755 3 6778999999999999999999999998875422211 1111
Q ss_pred -------HHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCC---CCchHHHHHH
Q 003439 350 -------SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV---KDVISWNTLI 419 (820)
Q Consensus 350 -------~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li 419 (820)
.....+...|++++|...+..+++.. +.+...+..+...|.+.|++++|.+.|++... .+...+..+.
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 12345678899999999999999875 56777888899999999999999999998763 3455677777
Q ss_pred HHHHHcCChHHHHHHHHhhhhcCCCCC--------CcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 003439 420 TGYAQNGLASEAIEVFQMMEECNEINP--------NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVD 491 (820)
Q Consensus 420 ~~~~~~g~~~~A~~l~~~m~~~~g~~p--------d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 491 (820)
..|. .++.++|+.+++.+.. ....+ ....+......+...|++++|.+.++.+++... .+...+..+..
T Consensus 427 ~l~~-~~~~~~A~~~l~~l~~-~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~ 503 (1157)
T PRK11447 427 NLYR-QQSPEKALAFIASLSA-SQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQ 503 (1157)
T ss_pred HHHH-hcCHHHHHHHHHhCCH-HHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 7774 4678999999887654 11000 011234455667889999999999999988753 35677888999
Q ss_pred HHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh---------HHHHHHHHH
Q 003439 492 MYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI---------TFVSLLTAC 559 (820)
Q Consensus 492 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---------t~~~ll~a~ 559 (820)
.|.+.|++++|...|+++. +.+...+..+...+...|+.++|+..++++......++.. .+..+...+
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 9999999999999999875 3344455566666778999999999998865432222221 233456778
Q ss_pred HhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHH
Q 003439 560 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGA 637 (820)
Q Consensus 560 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 637 (820)
...|+.++|.++++. .+++...+..+.+.|.+.|++++|++.+++. ...|+ ...+..++..+...|+.++|+
T Consensus 584 ~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 899999999998861 2345567788999999999999999999987 45564 569999999999999999999
Q ss_pred HHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCC
Q 003439 638 VASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 681 (820)
Q Consensus 638 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 681 (820)
..++++.+..|+++..+..++.++...|++++|.++++.+.+..
T Consensus 658 ~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 658 AQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 99999999999999999999999999999999999999988754
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=5.4e-20 Score=215.47 Aligned_cols=560 Identities=10% Similarity=0.003 Sum_probs=395.4
Q ss_pred ccCChHHHHHHhcccCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHHhhhCCCCCCccccHHHHHhhcCCcchHHHHH
Q 003439 91 NLGDLSFSRHTFDHISY--R-NVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHC 167 (820)
Q Consensus 91 ~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~ 167 (820)
..|++++|...|+...+ | +..++..+...|.+.|+.++|+..+++ .....|+...|..++....+...+..+++
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~k---Av~ldP~n~~~~~~La~i~~~~kA~~~ye 132 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLED---QLKRHPGDARLERSLAAIPVEVKSVTTVE 132 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH---HHhcCcccHHHHHHHHHhccChhHHHHHH
Confidence 44999999999987643 3 466788899999999999999999988 33456777777766655644444778888
Q ss_pred HHHHhCCCCcHHHHHHHHHH--------hhcCCChhHHHHHhccCCCCC--cc-cHHHHHHHHHhCCChhHHHHHHHHHH
Q 003439 168 SVLKLGFEWDVFVAASLLHM--------YCRFGLANVARKLFDDMPVRD--SG-SWNAMISGYCQSGNAVEALDILDEMR 236 (820)
Q Consensus 168 ~~~~~g~~~~~~~~~~li~~--------y~~~g~~~~A~~~f~~m~~~~--~~-~~~~li~~~~~~g~~~~A~~l~~~m~ 236 (820)
.+++.. +.+..++..+... |.+.+...++++ .+...++ .. ..-.+...|.+.|++++|++++.++.
T Consensus 133 ~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 133 ELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 888775 3445555555555 877777777776 3333343 33 34444899999999999999999999
Q ss_pred HCCCCCChHHHHhHHHhhhc-CCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCC-----CCc
Q 003439 237 LEGVSMDPITVASILPVCAR-SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME-----RDV 310 (820)
Q Consensus 237 ~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~d~ 310 (820)
+.+... ..-...+-.++.. .++ +.+..++.. .+..+..+...+++.|.+.|+.++|.+++++++. |+.
T Consensus 210 k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 210 QQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred hcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 886443 3334555556666 355 666666442 3446888999999999999999999999998854 222
Q ss_pred hHHHH------------------------------HHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHH--hc
Q 003439 311 VSWNS------------------------------IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA--QL 358 (820)
Q Consensus 311 ~~~~~------------------------------li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~--~~ 358 (820)
.+|-- ++.-+.++++++.+.++ ....|..... .+.... ..
T Consensus 284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~--~~r~~~~~~~ 355 (987)
T PRK09782 284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL------LATLPANEML--EERYAVSVAT 355 (987)
T ss_pred HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH------hcCCCcchHH--HHHHhhcccc
Confidence 22221 23444555555544433 1244444432 222222 23
Q ss_pred CcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCC-C-C----chHHHHHHHHHHHcCC---hH
Q 003439 359 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV-K-D----VISWNTLITGYAQNGL---AS 429 (820)
Q Consensus 359 ~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~-~----~~~~~~li~~~~~~g~---~~ 429 (820)
+...++.+....+.+.. +.+....--+.-...+.|+.++|.++|+..-. + + ...-+-++..|...+. ..
T Consensus 356 ~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 356 RNKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred CchhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 55666666666666652 44566666666667788999999999987654 2 2 2233356666766655 33
Q ss_pred HHHHH----------------------HHhhhhcCCCCCC---cccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchh
Q 003439 430 EAIEV----------------------FQMMEECNEINPN---QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 484 (820)
Q Consensus 430 ~A~~l----------------------~~~m~~~~g~~pd---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 484 (820)
++..+ +.......+..|+ ...+..+..++.. +..++|...+....... |+..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~ 510 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAW 510 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchH
Confidence 33333 2222221223343 3334444444444 88888999777776654 4544
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC--CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHh
Q 003439 485 VATCLVDMYGKCGRIDDAMSLFYQVP--RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSH 561 (820)
Q Consensus 485 ~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~ 561 (820)
....+...+...|++++|...|+++. .++...+..+...+.+.|+.++|...+++.++. .|+.. .+..+......
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHh
Confidence 44444555678999999999999776 344455777788889999999999999999985 45543 33344445566
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 003439 562 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVA 639 (820)
Q Consensus 562 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 639 (820)
.|++++|...++... .+.|+...+..+..++.+.|+.++|.+.+++. ...|+ ...++.+..++...|+.++|+..
T Consensus 589 ~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 589 PGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 799999999999887 45778889999999999999999999999987 56665 45888888999999999999999
Q ss_pred HHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 640 SDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 640 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
++++++++|+++..+..++.+|...|++++|...+++..+.
T Consensus 666 l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 666 LERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998765
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=1.7e-19 Score=211.38 Aligned_cols=598 Identities=10% Similarity=0.008 Sum_probs=419.4
Q ss_pred ChHHHHHHHHHHHHhCCCCChhhhHHHHHHHHccCChHHHHHHhcccCC--CCcchHHHHHHHHHhCCCchHHHHHHHHH
Q 003439 59 KLHHVKRLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISY--RNVYTWNSMISVYVRCGRLSEAVDCFYQF 136 (820)
Q Consensus 59 ~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~~ 136 (820)
+...+...+...++.-+.. ..++..|...|.+.|+.++|+..+++... |+-.-|..++..+ +++++|..+|+++
T Consensus 59 d~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l 134 (987)
T PRK09782 59 DEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEEL 134 (987)
T ss_pred CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHH
Confidence 7778888888887766554 77889999999999999999999988643 4333343434333 8999999999994
Q ss_pred hhhCCCCCCccccHHHH------HhhcCCcchHHHHHHHHHhCCCCcHHHHHHH-HHHhhcCCChhHHHHHhccCCCCC-
Q 003439 137 TLTSGLRPDFYTFPPVL------KACRNLVDGKKIHCSVLKLGFEWDVFVAASL-LHMYCRFGLANVARKLFDDMPVRD- 208 (820)
Q Consensus 137 m~~~~~~p~~~t~~~ll------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l-i~~y~~~g~~~~A~~~f~~m~~~~- 208 (820)
+....-.++...+.+.+ -.+.+...+.+... .......|+..+.... ...|.+.|++++|++++.++.+.+
T Consensus 135 ~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p 213 (987)
T PRK09782 135 LAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT 213 (987)
T ss_pred HHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC
Confidence 44332333333333332 12455555666665 3334444456555555 889999999999999998887432
Q ss_pred --cccHHHHHHHHHhC-CChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCC-ccH-----
Q 003439 209 --SGSWNAMISGYCQS-GNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE-FNL----- 279 (820)
Q Consensus 209 --~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~----- 279 (820)
..-+..|-.+|.++ ++ +++..+++. .++-|......+...+.+.|+.++|.+++..+...-.. |+.
T Consensus 214 l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~ 288 (987)
T PRK09782 214 LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLY 288 (987)
T ss_pred CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHH
Confidence 22355566677773 66 777777553 23356777888888888888888888887765332110 111
Q ss_pred -------------------------HHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHH--HHhCCChhhHHHH
Q 003439 280 -------------------------FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA--YEQSNDPITAHGF 332 (820)
Q Consensus 280 -------------------------~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~--~~~~g~~~~A~~~ 332 (820)
...-.++..+.+.++.+.|+++.+ ....+.. ..+.. ....+...++...
T Consensus 289 ~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~r~~~~~~~~~~~~~~~~ 364 (987)
T PRK09782 289 LLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANEM---LEERYAVSVATRNKAEALRL 364 (987)
T ss_pred HHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcchH---HHHHHhhccccCchhHHHHH
Confidence 112234677888888887777744 2222222 12222 2234666677777
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHH-hCCcCcchhHHhHHHHHHHhcCC---HHHHHHH-----
Q 003439 333 FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR-RGWFMEDVIIGNAVVDMYAKLGI---INSACAV----- 403 (820)
Q Consensus 333 ~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~~li~~y~~~g~---~~~A~~~----- 403 (820)
++.|.+.. .-+......+--.....|+.++|.+++..... .+.-..+..+.+-|+..|.+.+. ...|..+
T Consensus 365 ~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 443 (987)
T PRK09782 365 ARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP 443 (987)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence 77776541 11333333333445567888888888888766 22122345566678888887766 2223222
Q ss_pred --------------------HhcCC---CC--CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHh
Q 003439 404 --------------------FEGLP---VK--DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAY 458 (820)
Q Consensus 404 --------------------f~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~ 458 (820)
+.... .. +...|..+...+.. ++.++|+..|.+... ..|+......+..++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~---~~Pd~~~~L~lA~al 519 (987)
T PRK09782 444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ---RQPDAWQHRAVAYQA 519 (987)
T ss_pred cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH---hCCchHHHHHHHHHH
Confidence 11111 12 55677777777776 899999998888776 557765544445555
Q ss_pred hccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHH---HHHhcCChHHHHH
Q 003439 459 SHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS---CHGIHGQGDKALN 535 (820)
Q Consensus 459 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~ 535 (820)
...|++++|...++.+... .|+...+..+...+.+.|++++|...|++....+...++.... .....|++++|+.
T Consensus 520 ~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHH
Confidence 7899999999999987664 3444455677788899999999999999887554433333333 3334499999999
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 003439 536 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PV 613 (820)
Q Consensus 536 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~ 613 (820)
.+++.++ ..|+...+..+..++.+.|++++|...++.... +.| +...++.+...+...|+.++|++.+++. ..
T Consensus 598 ~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 598 DLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999998 578888899999999999999999999999884 456 4567888889999999999999999987 55
Q ss_pred CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCC
Q 003439 614 RPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 682 (820)
Q Consensus 614 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 682 (820)
.|+ ...+..+..++...|++++|+..++++++++|++.......+++..+..+++.|.+-++..-..++
T Consensus 673 ~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 673 LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 664 569999999999999999999999999999999999999999999999999999988877665544
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=2.1e-19 Score=185.94 Aligned_cols=451 Identities=14% Similarity=0.146 Sum_probs=357.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHc
Q 003439 212 WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 291 (820)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 291 (820)
-..|..-..+.|++++|.+.-...-+.+ ..+..+...+-..+.+..+++...+--...++.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4455666678888888887655443322 1222233333344445555554444333333332 2345678889999999
Q ss_pred cCCHHHHHHHHhccCC---CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHH-HHHHHHhcCcchhhhhH
Q 003439 292 FGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS-LTSIVAQLNDCRNSRSV 367 (820)
Q Consensus 292 ~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~-ll~a~~~~~~~~~a~~i 367 (820)
.|++++|+.+++.+.+ ..+..|..+..++...|+.+.|...|.+..+ +.|+.+...+ +-......|.+++|..-
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999998866 3567899999999999999999999998876 4576554433 23334457889999998
Q ss_pred HHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCC---chHHHHHHHHHHHcCChHHHHHHHHhhhhcCCC
Q 003439 368 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD---VISWNTLITGYAQNGLASEAIEVFQMMEECNEI 444 (820)
Q Consensus 368 ~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~ 444 (820)
+..+++.. +.-..+|+.|...+-..|++..|..-|++...-| ...|-.|...|...+.+++|+..+.+... .
T Consensus 207 YlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~---l 281 (966)
T KOG4626|consen 207 YLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN---L 281 (966)
T ss_pred HHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh---c
Confidence 88888765 4556788999999999999999999999876544 45788888999999999999999998876 7
Q ss_pred CCCc-ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchH
Q 003439 445 NPNQ-GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAI 520 (820)
Q Consensus 445 ~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~l 520 (820)
+|+. +.+..+...|...|.++.|...+++.++.... -...|+.|..++-..|++.+|.+.+.+.. ..-..+.+.|
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 7864 56677777789999999999999999886422 36789999999999999999999998876 4445668889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHHHc
Q 003439 521 ISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFGRA 598 (820)
Q Consensus 521 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~ 598 (820)
...|...|.+++|..+|....+ +.|.- ..++.|...|-+.|++++|+..+++.. .++|+. ..|+.|...|-..
T Consensus 361 gni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHh
Confidence 9999999999999999999999 78875 589999999999999999999998877 688874 7899999999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHH
Q 003439 599 GHLGMAHNFIQNM-PVRPDAS-IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 676 (820)
Q Consensus 599 g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 676 (820)
|+.+.|.+.+.+. .+.|.-. ..+.|...|...|++.+|+..|+.++.++|+.+.+|-.+.-.+--..+|.+-.+.+++
T Consensus 436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~k 515 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKK 515 (966)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHH
Confidence 9999999999887 6778644 8899999999999999999999999999999999999888877777788774444433
Q ss_pred H
Q 003439 677 A 677 (820)
Q Consensus 677 m 677 (820)
+
T Consensus 516 l 516 (966)
T KOG4626|consen 516 L 516 (966)
T ss_pred H
Confidence 3
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=4.7e-19 Score=183.43 Aligned_cols=413 Identities=11% Similarity=0.130 Sum_probs=333.4
Q ss_pred hhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCC---CchHHHHHHHHHHhCCChhhHH
Q 003439 254 CARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER---DVVSWNSIIAAYEQSNDPITAH 330 (820)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~ 330 (820)
.-+.|++.+|++.-..+-... +.+....-.+-..|....+++.....-....+. -..+|..+...+-..|++++|+
T Consensus 58 ~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al 136 (966)
T KOG4626|consen 58 LYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDAL 136 (966)
T ss_pred HHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHH
Confidence 345678887776544443332 222222223334566666666544333222222 3468999999999999999999
Q ss_pred HHHHHHHHcCCCC-CcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCC
Q 003439 331 GFFTTMQQAGIQP-DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 409 (820)
Q Consensus 331 ~~~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 409 (820)
.+++.|.+. +| ....|..+..++...|+.+.|.+.+...++.+ +....+.+-+-...-..|++++|...+.+..+
T Consensus 137 ~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 137 ALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 999999874 56 45688999999999999999999999998864 33334455566666778999999988876543
Q ss_pred C---CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCc-ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhH
Q 003439 410 K---DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ-GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 485 (820)
Q Consensus 410 ~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 485 (820)
. =.+.|+.|...+-..|+..+|++.|++..+ +.|+- ..|..+-..|...+.++.|...+..+..... ....+
T Consensus 213 ~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp-n~A~a 288 (966)
T KOG4626|consen 213 TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP-NHAVA 288 (966)
T ss_pred hCCceeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC-cchhh
Confidence 3 357899999999999999999999999877 77763 4677888888888899999888887766432 24566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--C-CccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHh
Q 003439 486 ATCLVDMYGKCGRIDDAMSLFYQVPR--S-SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSH 561 (820)
Q Consensus 486 ~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~ 561 (820)
+..|...|-..|.+|-|+..+++... | -...||.|..++...|++.+|...|.+.+. +.|+.. ..+.|.+++..
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYRE 366 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHH
Confidence 77788889999999999999998773 3 345699999999999999999999999999 688864 88999999999
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHH
Q 003439 562 SGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDAS-IWGALLGACRIHGNMELGAV 638 (820)
Q Consensus 562 ~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~ 638 (820)
.|.+++|..+|.... .+.|. ....+.|...|-.+|++++|..-+++. .++|+.. .++.+.+.|...|+++.|++
T Consensus 367 ~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 367 QGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred hccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHH
Confidence 999999999998877 45665 467899999999999999999999887 7889865 99999999999999999999
Q ss_pred HHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 639 ASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 639 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.+.+++.++|.-+.++..|+.+|...|+..+|..-++.....
T Consensus 444 ~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 444 CYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999988764
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=7.8e-17 Score=186.05 Aligned_cols=419 Identities=11% Similarity=0.004 Sum_probs=257.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHc
Q 003439 212 WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 291 (820)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 291 (820)
+...-..+.+.|++++|+..|++..+ +.|+...|..+..++...|+++.|...+..+++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44556677778888888888887765 34566666666666667777777777776666653 2245556666666777
Q ss_pred cCCHHHHHHHHhccCCC---CchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHH
Q 003439 292 FGMMRHALRVFDQMMER---DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 368 (820)
Q Consensus 292 ~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 368 (820)
.|++++|..-|...... +......++.-+.. ..+.....+..+. .|.
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~--~~~------------------------ 256 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILET--KPE------------------------ 256 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhc--CCC------------------------
Confidence 77777666655433211 11111111111111 1111111111111 111
Q ss_pred HHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCC---chHHHHHHHHH---HHcCChHHHHHHHHhhhhcC
Q 003439 369 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD---VISWNTLITGY---AQNGLASEAIEVFQMMEECN 442 (820)
Q Consensus 369 ~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~---~~~g~~~~A~~l~~~m~~~~ 442 (820)
+...+..+.. |........+..-++...+.+ ...+..+...+ ...+++++|++.|++.....
T Consensus 257 -----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~ 324 (615)
T TIGR00990 257 -----------NLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG 324 (615)
T ss_pred -----------CCCCHHHHHH-HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC
Confidence 1111111111 111000000111011100000 01111111111 12356777777777776511
Q ss_pred CCCCCc-ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccc
Q 003439 443 EINPNQ-GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWN 518 (820)
Q Consensus 443 g~~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~ 518 (820)
...|+. ..+..+...+...|++++|...++.+++... .....+..+...|...|++++|...|++.. +.+...|.
T Consensus 325 ~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 403 (615)
T TIGR00990 325 KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYY 403 (615)
T ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 233432 3445555556677778888777777766532 234566777778888888888888887665 44566688
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHH
Q 003439 519 AIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR 597 (820)
Q Consensus 519 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 597 (820)
.+...|...|++++|+..|++.++ +.|+. ..+..+..++.+.|++++|...|+..... .+.+...++.+..+|..
T Consensus 404 ~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~ 479 (615)
T TIGR00990 404 HRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLD 479 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHH
Confidence 888888899999999999999988 46654 56777888889999999999999988743 22346788889999999
Q ss_pred cCCHHHHHHHHHhC-CCCCCH-------H-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcc
Q 003439 598 AGHLGMAHNFIQNM-PVRPDA-------S-IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWE 668 (820)
Q Consensus 598 ~g~~~eA~~~~~~m-~~~p~~-------~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 668 (820)
.|++++|.+.|++. ...|+. . .++..+..+...|++++|+..++++++++|++...+..|+.+|...|+++
T Consensus 480 ~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~ 559 (615)
T TIGR00990 480 QNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVD 559 (615)
T ss_pred ccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHH
Confidence 99999999999885 444431 1 12222223444699999999999999999999889999999999999999
Q ss_pred hHHHHHHHHHhC
Q 003439 669 GVDEVRSLARDR 680 (820)
Q Consensus 669 ~A~~~~~~m~~~ 680 (820)
+|.+.+++..+.
T Consensus 560 eAi~~~e~A~~l 571 (615)
T TIGR00990 560 EALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=5.5e-18 Score=185.62 Aligned_cols=290 Identities=12% Similarity=0.090 Sum_probs=221.2
Q ss_pred HHHhcCCHHHHHHHHhcCCCC---CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCC---cccHhhHHHHhhccCC
Q 003439 390 MYAKLGIINSACAVFEGLPVK---DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN---QGTYVSILPAYSHVGA 463 (820)
Q Consensus 390 ~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd---~~t~~~ll~a~~~~~~ 463 (820)
.+...|++++|...|+++.+. +..+|..+...+.+.|++++|+.+++.+.. .+..++ ..++..+...+...|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLS-RPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 455667777777777776532 345677777778888888888888887766 322221 1345666777777888
Q ss_pred hhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc--------ccchHHHHHHhcCChHHHHH
Q 003439 464 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV--------PWNAIISCHGIHGQGDKALN 535 (820)
Q Consensus 464 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~A~~ 535 (820)
++.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+.+.. .|..+...+.+.|++++|+.
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 888888888877653 345667888888888888888888888887632221 24556777888999999999
Q ss_pred HHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 003439 536 FFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH--LKHYGCMVDLFGRAGHLGMAHNFIQNM- 611 (820)
Q Consensus 536 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~m- 611 (820)
.|+++.+. .|+ ...+..+...+.+.|++++|.++++++.+. .|+ ...++.++.+|.+.|++++|.+.++++
T Consensus 202 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 202 LLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999884 455 447777888999999999999999998853 343 456788999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhh---cCCcchHHHHHHHHHhCCCCcCCc
Q 003439 612 PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN---VGKWEGVDEVRSLARDRGLKKTPG 687 (820)
Q Consensus 612 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~---~g~~~~A~~~~~~m~~~~~~~~~~ 687 (820)
...|+...+..++..+.+.|++++|...++++++..|++.. +..+...+.. .|+.+++..++++|.+++++++|.
T Consensus 277 ~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 277 EEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 45677777788999999999999999999999999997664 4444444332 568999999999999999999886
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=1.5e-17 Score=182.18 Aligned_cols=284 Identities=15% Similarity=0.143 Sum_probs=189.1
Q ss_pred HHHhCCChhhHHHHHHHHHHcCCCCC-cchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCc--chhHHhHHHHHHHhcC
Q 003439 319 AYEQSNDPITAHGFFTTMQQAGIQPD-LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME--DVIIGNAVVDMYAKLG 395 (820)
Q Consensus 319 ~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~~li~~y~~~g 395 (820)
.+...|++++|+..|.++.+. .|+ ..++..+...+...|+++.|..++..+++.+...+ ...++..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 344566666677776666654 222 22333444444444444444444444433220111 1234455555555555
Q ss_pred CHHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHH
Q 003439 396 IINSACAVFEGLPV---KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 472 (820)
Q Consensus 396 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~ 472 (820)
++++|..+|+.+.+ .+..+++.++..+.+.|++++|++.|+.+.+
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-------------------------------- 169 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEK-------------------------------- 169 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHH--------------------------------
Confidence 55555555555543 2344555555555555555555555555544
Q ss_pred HHHHhCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003439 473 RVIKNCLCFD----VFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 545 (820)
Q Consensus 473 ~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 545 (820)
.+..+. ...+..+...+.+.|++++|.+.|+++. +.+...|..+...|.+.|++++|+++|+++.+.
T Consensus 170 ----~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-- 243 (389)
T PRK11788 170 ----LGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-- 243 (389)
T ss_pred ----hcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence 222111 1234556777888888888888888776 233446777888999999999999999999985
Q ss_pred CCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 003439 546 RPD--HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGA 622 (820)
Q Consensus 546 ~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ 622 (820)
.|+ ..++..+..++...|++++|.+.++.+.+. .|+...+..++..|.+.|++++|.++++++ ...|+...++.
T Consensus 244 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~ 320 (389)
T PRK11788 244 DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHR 320 (389)
T ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 444 356888999999999999999999998853 677777789999999999999999999876 66799999998
Q ss_pred HHHHHHh---cCChhHHHHHHHHHhc
Q 003439 623 LLGACRI---HGNMELGAVASDRLFE 645 (820)
Q Consensus 623 ll~~~~~---~g~~~~a~~~~~~~~~ 645 (820)
++..+.. +|+.+++...++++++
T Consensus 321 l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 321 LLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHhhhccCCccchhHHHHHHHHHH
Confidence 8887664 5688899988888775
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=6.9e-16 Score=177.53 Aligned_cols=328 Identities=9% Similarity=-0.007 Sum_probs=251.1
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHH
Q 003439 313 WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 392 (820)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~ 392 (820)
...++..+.+.|++++|+.+++........+.. .+..+..+....|+.+.|.+.+..+.+.. |.+...+..+...|.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~ 121 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHH
Confidence 344566667777888888877777765433332 33334455556777777777777777764 666777888888899
Q ss_pred hcCCHHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHH
Q 003439 393 KLGIINSACAVFEGLPV---KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 469 (820)
Q Consensus 393 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 469 (820)
+.|+.++|...|++... .+...|..+...+.+.|++++|...++.+.. ..|+.......+..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~---~~P~~~~a~~~~~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ---EVPPRGDMIATCLSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999887653 3567888888899999999999999998866 44544433333345778899999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHH----HHHHHHHHHH
Q 003439 470 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDK----ALNFFRQMLD 542 (820)
Q Consensus 470 i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~ 542 (820)
.++.+++....++......+...+.+.|++++|...|++.. +.+...+..+...|...|++++ |+..|++..+
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 99888776543444555566778889999999999998876 3455668888899999999885 8999999998
Q ss_pred cCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHH
Q 003439 543 EGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASI 619 (820)
Q Consensus 543 ~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~ 619 (820)
+.|+. ..+..+...+...|++++|...++...+. .|+ ...+..+..+|.+.|++++|.+.++++ ...|+...
T Consensus 279 --l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 279 --FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred --hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence 56764 57888899999999999999999988853 454 456777889999999999999999887 45676544
Q ss_pred -HHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 003439 620 -WGALLGACRIHGNMELGAVASDRLFEVDSENV 651 (820)
Q Consensus 620 -~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 651 (820)
+..+..++...|+.++|+..++++++..|++.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 34456778999999999999999999999764
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.77 E-value=1.9e-15 Score=177.75 Aligned_cols=396 Identities=11% Similarity=0.060 Sum_probs=184.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCH
Q 003439 216 ISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 295 (820)
Q Consensus 216 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 295 (820)
+......|+.++|++++.+..... ..+...+..+..++...|++++|.++++..++.. +.+......+...+...|+.
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 344455666677766666665411 2233345555555556666666666666555542 22334444555555555555
Q ss_pred HHHHHHHhccCC--C-CchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHH
Q 003439 296 RHALRVFDQMME--R-DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM 372 (820)
Q Consensus 296 ~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 372 (820)
++|...+++..+ | +.. |..+...+...|+.++|+..++++.+
T Consensus 100 ~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~---------------------------------- 144 (765)
T PRK10049 100 DEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP---------------------------------- 144 (765)
T ss_pred HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH----------------------------------
Confidence 555555555433 2 223 55555555555555555555555544
Q ss_pred HhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCch--------HHHHHHHHH-----HHcCCh---HHHHHHHH
Q 003439 373 RRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI--------SWNTLITGY-----AQNGLA---SEAIEVFQ 436 (820)
Q Consensus 373 ~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~--------~~~~li~~~-----~~~g~~---~~A~~l~~ 436 (820)
. .+.+..+...+...+.+.|..+.|.+.++.... +.. ....++... ...+++ ++|++.++
T Consensus 145 -~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 145 -R--APQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred -h--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 3 244555555666677777788888877776654 211 111111111 111223 56666666
Q ss_pred hhhhcCCCCCCccc-Hhh----HHHHhhccCChhHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 003439 437 MMEECNEINPNQGT-YVS----ILPAYSHVGALRQGIKIHARVIKNCLC-FDVFVATCLVDMYGKCGRIDDAMSLFYQVP 510 (820)
Q Consensus 437 ~m~~~~g~~pd~~t-~~~----ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 510 (820)
.+.+.....|+... +.. .+.++...|+.++|+..++.+.+.+.. |+. ....+...|...|++++|+..|+++.
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 66641122332211 110 022233445555555555555554321 111 11113444555555555555555443
Q ss_pred CCCc-------cccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCC
Q 003439 511 RSSS-------VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 582 (820)
Q Consensus 511 ~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~ 582 (820)
..+. ..+..+..++...|++++|+++++++.+. .|... .+. ...-.
T Consensus 300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~--~P~~~~~~~------------------------~~~~~ 353 (765)
T PRK10049 300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN--SPPFLRLYG------------------------SPTSI 353 (765)
T ss_pred hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc--CCceEeecC------------------------CCCCC
Confidence 2111 11222333444555555555555555442 11100 000 00001
Q ss_pred CC---hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhH
Q 003439 583 PH---LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLM 657 (820)
Q Consensus 583 p~---~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 657 (820)
|+ ...+..+..++...|++++|++.++++ ...| +...|..+...+...|+.++|+..++++++++|++...+..+
T Consensus 354 p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~ 433 (765)
T PRK10049 354 PNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQ 433 (765)
T ss_pred CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 11 112333444455555555555555544 2222 233455555555555555555555555555555555555555
Q ss_pred HHHhhhcCCcchHHHHHHHHHh
Q 003439 658 SNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 658 ~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
+..+...|+|++|..+++.+.+
T Consensus 434 a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 434 AWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 5555555555555555555443
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=4.2e-15 Score=171.74 Aligned_cols=418 Identities=12% Similarity=0.006 Sum_probs=284.8
Q ss_pred HHHHHHHhhcCCChhHHHHHhccCC--CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-ChHHHHhHHHhhhcC
Q 003439 181 AASLLHMYCRFGLANVARKLFDDMP--VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM-DPITVASILPVCARS 257 (820)
Q Consensus 181 ~~~li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~ 257 (820)
+..+-+.|.+.|++++|.+.|++.. .|+...|..+..+|.+.|++++|++.+++..+. .| +...+..+-.++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 4455677888999999999999865 467788999999999999999999999998875 34 455788888999999
Q ss_pred CChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHH
Q 003439 258 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 337 (820)
Q Consensus 258 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 337 (820)
|++++|..-+..+...+-..+.... .++.-+.+......+...++.-+ .+..++..+.. |........+..-+.+-.
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSA-QAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHH-HHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 9999999888766555322222222 22222211112234444443322 23334443322 222222221111111100
Q ss_pred HcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHH------HhcCCHHHHHHHHhcCCC--
Q 003439 338 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY------AKLGIINSACAVFEGLPV-- 409 (820)
Q Consensus 338 ~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y------~~~g~~~~A~~~f~~~~~-- 409 (820)
+ ..|+. ...++..+ ...+++++|.+.|+....
T Consensus 285 ~--~~~~~--------------------------------------~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~ 324 (615)
T TIGR00990 285 E--LDEET--------------------------------------GNGQLQLGLKSPESKADESYEEAARAFEKALDLG 324 (615)
T ss_pred c--ccccc--------------------------------------ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC
Confidence 0 00100 00000000 123566677776665442
Q ss_pred ----CCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCc-ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchh
Q 003439 410 ----KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ-GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 484 (820)
Q Consensus 410 ----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 484 (820)
.+...|+.+...+...|++++|+..|++... +.|+. ..|..+...+...|++++|...++.+++.. +.+..
T Consensus 325 ~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~ 400 (615)
T TIGR00990 325 KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE---LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPD 400 (615)
T ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 2345677777777888888888888888776 55653 356666677778888888888888887764 23567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHH
Q 003439 485 VATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACS 560 (820)
Q Consensus 485 ~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~ 560 (820)
++..+...|...|++++|...|++.. +.+...|..+...+.+.|++++|+..|++.++ ..|+ ...+..+..++.
T Consensus 401 ~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~ 478 (615)
T TIGR00990 401 IYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLL 478 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHH
Confidence 88888889999999999999998876 34455677888899999999999999999988 4565 468888889999
Q ss_pred hcCCHHHHHHHHHHhHHhhCCCCCh-h-------HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhc
Q 003439 561 HSGLVSEGQRYFHMMQEEFGIKPHL-K-------HYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDA-SIWGALLGACRIH 630 (820)
Q Consensus 561 ~~g~~~~a~~~~~~m~~~~g~~p~~-~-------~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~ 630 (820)
..|++++|.+.|+...+ +.|+. . .++.....+...|++++|.+++++. ...|+. ..|..+...+.+.
T Consensus 479 ~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~ 555 (615)
T TIGR00990 479 DQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQ 555 (615)
T ss_pred HccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 99999999999998774 34431 1 1222223344579999999999885 556654 4789999999999
Q ss_pred CChhHHHHHHHHHhccCCCCcc
Q 003439 631 GNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 631 g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
|++++|+..++++.++.+....
T Consensus 556 g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 556 GDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred cCHHHHHHHHHHHHHHhccHHH
Confidence 9999999999999998875443
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=2.3e-15 Score=177.05 Aligned_cols=363 Identities=9% Similarity=0.025 Sum_probs=205.1
Q ss_pred HHHHHHccCCHHHHHHHHhccCC---CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCC-cchHHHHHHHHHhcCc
Q 003439 285 LINMYAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD-LLTLVSLTSIVAQLND 360 (820)
Q Consensus 285 li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~ 360 (820)
.+......|+.++|++++..... .+...+..+...+.+.|++++|.++|++..+. .|+ ......+...+...|+
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence 33444445555555555554432 12223455555555555555555555554432 222 2223333334444444
Q ss_pred chhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHh
Q 003439 361 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV---KDVISWNTLITGYAQNGLASEAIEVFQM 437 (820)
Q Consensus 361 ~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 437 (820)
.++|...+..+++. .+.+.. +..+..++...|+.++|...+++..+ .+...+..+...+...|..++|++.++.
T Consensus 99 ~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 99 YDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 44444444444443 244555 67777788888888888888877653 2455566677777778888888887775
Q ss_pred hhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH---HHHHHHHhhCC---C
Q 003439 438 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI---DDAMSLFYQVP---R 511 (820)
Q Consensus 438 m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~~~~~~---~ 511 (820)
... .|+... -+. ...+ ....+. .+...+...+++ ++|++.++.+. +
T Consensus 176 ~~~----~p~~~~---~l~-------~~~~----~~~~r~----------~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~ 227 (765)
T PRK10049 176 ANL----TPAEKR---DLE-------ADAA----AELVRL----------SFMPTRSEKERYAIADRALAQYDALEALWH 227 (765)
T ss_pred CCC----CHHHHH---HHH-------HHHH----HHHHHh----------hcccccChhHHHHHHHHHHHHHHHHHhhcc
Confidence 542 333100 000 0000 000000 000011111222 44444444443 1
Q ss_pred CCccccch-------HHHHHHhcCChHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC
Q 003439 512 SSSVPWNA-------IISCHGIHGQGDKALNFFRQMLDEGVR-PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP 583 (820)
Q Consensus 512 ~~~~~~~~-------li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p 583 (820)
.++..... .+..+...|++++|+..|+++.+.+-. |+.. ...+..++...|++++|+.+|+.+.......+
T Consensus 228 ~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~ 306 (765)
T PRK10049 228 DNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIA 306 (765)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence 11111101 122334557777777777777765421 3221 12245567777777777777776653211110
Q ss_pred --ChhHHHHHHHHHHHcCCHHHHHHHHHhCC-CC-------------CC---HHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 003439 584 --HLKHYGCMVDLFGRAGHLGMAHNFIQNMP-VR-------------PD---ASIWGALLGACRIHGNMELGAVASDRLF 644 (820)
Q Consensus 584 --~~~~~~~li~~~~~~g~~~eA~~~~~~m~-~~-------------p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 644 (820)
.......|..++...|++++|.+.++++. .. |+ ...+..+...+...|+.++|+..+++++
T Consensus 307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al 386 (765)
T PRK10049 307 DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA 386 (765)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12345556666777777777777777662 22 23 2245567778899999999999999999
Q ss_pred ccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCC
Q 003439 645 EVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 681 (820)
Q Consensus 645 ~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 681 (820)
+..|+++..+..++.++...|+.++|.+.++++.+..
T Consensus 387 ~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 387 YNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999988754
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=3.8e-14 Score=163.26 Aligned_cols=420 Identities=13% Similarity=0.071 Sum_probs=220.8
Q ss_pred HhhcCCChhHHHHHhccCCCCCcc---cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh---HHHHhHHHhhhcCCCh
Q 003439 187 MYCRFGLANVARKLFDDMPVRDSG---SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP---ITVASILPVCARSDNI 260 (820)
Q Consensus 187 ~y~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~~~~ 260 (820)
...+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+. ..+..+...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 355778888888888887643322 23377788888888888888888876 3322 2222334566777888
Q ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHh--CCChhhHHHHHHHHHH
Q 003439 261 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ--SNDPITAHGFFTTMQQ 338 (820)
Q Consensus 261 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~--~g~~~~A~~~~~~m~~ 338 (820)
+.|.++++.+++... .+..++..++..|...++.++|++.++++...+......+..+|.. .++..+|++.++++.+
T Consensus 119 d~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 888888888887753 3456666778888888888888888888866443332224344444 4555558888888877
Q ss_pred cCCCCC-cchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCC-CchHHH
Q 003439 339 AGIQPD-LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWN 416 (820)
Q Consensus 339 ~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~ 416 (820)
. .|+ ...+.....++...| -...|.++..+-+.- +...+.
T Consensus 198 ~--~P~n~e~~~~~~~~l~~~~------------------------------------~~~~a~~l~~~~p~~f~~~~~~ 239 (822)
T PRK14574 198 L--APTSEEVLKNHLEILQRNR------------------------------------IVEPALRLAKENPNLVSAEHYR 239 (822)
T ss_pred h--CCCCHHHHHHHHHHHHHcC------------------------------------CcHHHHHHHHhCccccCHHHHH
Confidence 5 233 223344444444444 444444444332210 000000
Q ss_pred HH----HHHHH---------HcCC---hHHHHHHHHhhhhcCCCCCCccc-H----hhHHHHhhccCChhHHHHHHHHHH
Q 003439 417 TL----ITGYA---------QNGL---ASEAIEVFQMMEECNEINPNQGT-Y----VSILPAYSHVGALRQGIKIHARVI 475 (820)
Q Consensus 417 ~l----i~~~~---------~~g~---~~~A~~l~~~m~~~~g~~pd~~t-~----~~ll~a~~~~~~~~~a~~i~~~~~ 475 (820)
-+ +.-.+ ..++ .+.|+.-++.+....+-.|.... | .-.+-++...++..++.+.++.+.
T Consensus 240 ~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~ 319 (822)
T PRK14574 240 QLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAME 319 (822)
T ss_pred HHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 00 00000 0111 23444444444431222232211 1 123344555666666666666666
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---------ccccchHHHHHHhcCChHHHHHHHHHHHHcCC-
Q 003439 476 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS---------SVPWNAIISCHGIHGQGDKALNFFRQMLDEGV- 545 (820)
Q Consensus 476 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~- 545 (820)
..+.+.-..+-.++.++|...+++++|..+|.++...+ ......|.-+|...+++++|..+++++.+.-.
T Consensus 320 ~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~ 399 (822)
T PRK14574 320 AEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPY 399 (822)
T ss_pred hcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc
Confidence 55544444455566666666666666666666553211 11123455555556666666666666555210
Q ss_pred ----------CCC--hh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 003439 546 ----------RPD--HI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM- 611 (820)
Q Consensus 546 ----------~p~--~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m- 611 (820)
.|| -. .+..++..+...|++.+|++.++.+... -+-|......+.+++...|+..+|++.++..
T Consensus 400 ~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 400 QVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred EEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 111 11 1222344445555555555555555421 1224445555555555555555555555443
Q ss_pred CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 003439 612 PVRPDAS-IWGALLGACRIHGNMELGAVASDRLFEVDSENV 651 (820)
Q Consensus 612 ~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 651 (820)
...|+.. +.-.++.+....|++++|..+.+.+.+..|+++
T Consensus 478 ~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 478 SLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 2334322 444444445555555555555555555555544
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1e-13 Score=152.22 Aligned_cols=150 Identities=14% Similarity=0.168 Sum_probs=75.8
Q ss_pred ChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 003439 529 QGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 607 (820)
Q Consensus 529 ~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~ 607 (820)
..++|+++|.+.+.. .| |...-+.+.-.++..|++.+|..+|.+..+. ..-...+|-.+...|.-+|++..|.++
T Consensus 627 ~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqm 702 (1018)
T KOG2002|consen 627 HQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQM 702 (1018)
T ss_pred HHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHH
Confidence 344555555555552 22 3344444555555555555555555555543 112333445555555555555555555
Q ss_pred HHhC----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHH-------------------HHhhhc
Q 003439 608 IQNM----PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS-------------------NIYANV 664 (820)
Q Consensus 608 ~~~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~-------------------~~y~~~ 664 (820)
|+.. -.+.+..+.+.|..++...|.+.+|.+.+..+..+.|.|+.....++ .+....
T Consensus 703 Ye~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~ 782 (1018)
T KOG2002|consen 703 YENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAV 782 (1018)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 5543 11223445555555555555555555555555555555555433322 233334
Q ss_pred CCcchHHHHHHHHHhCCC
Q 003439 665 GKWEGVDEVRSLARDRGL 682 (820)
Q Consensus 665 g~~~~A~~~~~~m~~~~~ 682 (820)
+..++|.++|..+...+-
T Consensus 783 ~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 783 KELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 456667777777766544
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.73 E-value=3.3e-15 Score=171.93 Aligned_cols=325 Identities=10% Similarity=-0.025 Sum_probs=265.1
Q ss_pred chHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCC---CCchHHHHHHHHH
Q 003439 346 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV---KDVISWNTLITGY 422 (820)
Q Consensus 346 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 422 (820)
.-..-++..+...|+.+.|..++..++... +.+......++......|+.++|...|+.+.. .+...|..+...+
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 345556777888899999999999998875 55555666666777789999999999998863 3567888899999
Q ss_pred HHcCChHHHHHHHHhhhhcCCCCCCc-ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 003439 423 AQNGLASEAIEVFQMMEECNEINPNQ-GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 501 (820)
Q Consensus 423 ~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 501 (820)
.+.|++++|+..|++... +.|+. ..+..+...+...|+.++|...+..+......+.. .+..+ ..+.+.|++++
T Consensus 121 ~~~g~~~~Ai~~l~~Al~---l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~e 195 (656)
T PRK15174 121 LKSKQYATVADLAEQAWL---AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPE 195 (656)
T ss_pred HHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHH
Confidence 999999999999999987 66764 45667788899999999999999988776544333 33333 34788999999
Q ss_pred HHHHHhhCCCCC----ccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHH----HHHHH
Q 003439 502 AMSLFYQVPRSS----SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSE----GQRYF 572 (820)
Q Consensus 502 A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~----a~~~~ 572 (820)
|...++.+.+.+ ...+..+...+...|++++|+..|+++.+. .|+ ...+..+..++...|++++ |...|
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 999999876432 223444567888999999999999999984 565 4577788889999999986 79999
Q ss_pred HHhHHhhCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003439 573 HMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 573 ~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 649 (820)
+...+ +.|+ ...+..+..+|.+.|++++|...+++. ...|+ ..++..+..++...|++++|+..++++++.+|+
T Consensus 274 ~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 274 RHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred HHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 88874 4554 568889999999999999999999987 45565 457888999999999999999999999999998
Q ss_pred CcchHHhHHHHhhhcCCcchHHHHHHHHHhCCC
Q 003439 650 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 682 (820)
Q Consensus 650 ~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 682 (820)
++..+..++.++...|++++|...++.+.+...
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 887777788999999999999999999876543
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.69 E-value=1.2e-12 Score=143.90 Aligned_cols=477 Identities=11% Similarity=0.036 Sum_probs=286.4
Q ss_pred hhHHHHHhccCCCCCcccHHHHH---HHHHhCCChhHHHHHHHHHHHC--CCCCChHHHHhHHHhhhcCCChHHHHHHHH
Q 003439 194 ANVARKLFDDMPVRDSGSWNAMI---SGYCQSGNAVEALDILDEMRLE--GVSMDPITVASILPVCARSDNILSGLLIHL 268 (820)
Q Consensus 194 ~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 268 (820)
++.|.+.|......+..-.-.|+ ......|++..|+.+|+..... ..+||... .+-..+.+.++.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 46666666655432222111222 2233456777777777775432 23344322 12234456677777777777
Q ss_pred HHHHhCCCccHHHHHHHHHHHHccC---CHHHHHHHHhcc---CCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCC
Q 003439 269 YIVKHGLEFNLFVSNNLINMYAKFG---MMRHALRVFDQM---MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 342 (820)
Q Consensus 269 ~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~f~~m---~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 342 (820)
.+++... .++..+-.|.-.-.... .+..+..++... ...|++..+.|...|.-.|+++.++.+...+......
T Consensus 224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 7766532 12222222222212222 233444444333 2246777777777777777777777777776554211
Q ss_pred --CCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCC---CchHHHH
Q 003439 343 --PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK---DVISWNT 417 (820)
Q Consensus 343 --pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~ 417 (820)
.-...|-.+.+++-..|+++.|...|-...+.. ...-+..+-.|..+|.+.|+++.|...|+.+... +..+-..
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~i 381 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKI 381 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHH
Confidence 112335566677777777777777777776654 1111334456778888888888888888776533 3445555
Q ss_pred HHHHHHHcC----ChHHHHHHHHhhhhcCCCCC-CcccHhhHHHHhhccCChhHHHHHHHHHH----HhCCCCchhHHHH
Q 003439 418 LITGYAQNG----LASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIKIHARVI----KNCLCFDVFVATC 488 (820)
Q Consensus 418 li~~~~~~g----~~~~A~~l~~~m~~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~----~~g~~~~~~~~~~ 488 (820)
+...|+..+ ..++|..++.+..+ ..| |...|..+-.. ...+++......+..+. ..+-.+.+.+.|.
T Consensus 382 LG~Lya~~~~~~~~~d~a~~~l~K~~~---~~~~d~~a~l~laql-~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 382 LGCLYAHSAKKQEKRDKASNVLGKVLE---QTPVDSEAWLELAQL-LEQTDPWASLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHhHHHhhhhhhHHHHHHHHHHHHHHh---cccccHHHHHHHHHH-HHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 555565554 34666666666555 223 33334333333 33444444455554433 3455567778888
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC-------CCcc------ccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHH
Q 003439 489 LVDMYGKCGRIDDAMSLFYQVPR-------SSSV------PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVS 554 (820)
Q Consensus 489 li~~y~~~g~~~~A~~~~~~~~~-------~~~~------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ 554 (820)
+...+...|.++.|...|.+... +|.. +--.+...+-..++.+.|.+.|..... ..|+.+ .|..
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--ehp~YId~ylR 535 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--EHPGYIDAYLR 535 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--HCchhHHHHHH
Confidence 88888888888888888876541 2221 111244555666788888888888888 367765 4555
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHh----CCCCCCHHHHHHHHHHHHh-
Q 003439 555 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN----MPVRPDASIWGALLGACRI- 629 (820)
Q Consensus 555 ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~----m~~~p~~~~~~~ll~~~~~- 629 (820)
++..-...+...+|...+..... ....++..++-+.+.+.+...+.-|.+-|+. ....+|+.+.-+|.+.|.+
T Consensus 536 l~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~ 613 (1018)
T KOG2002|consen 536 LGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA 613 (1018)
T ss_pred hhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH
Confidence 55333445677888888877764 4455566677777777777777777764433 3334677777777776542
Q ss_pred -----------cCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCC
Q 003439 630 -----------HGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 682 (820)
Q Consensus 630 -----------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 682 (820)
.+..+.|++.|.+++..+|.|.-+-..++-+++..|+|++|..+|.+..+...
T Consensus 614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 614 LHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred hcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 23457788888888888888887777888888888888888888888877644
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=6.9e-13 Score=132.63 Aligned_cols=327 Identities=17% Similarity=0.210 Sum_probs=223.1
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHhhhCCCCCCccccHHHHHhhc--CCcc----hHHHHHHHHHhCCCCcHHHHHH
Q 003439 110 VYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR--NLVD----GKKIHCSVLKLGFEWDVFVAAS 183 (820)
Q Consensus 110 ~~~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~t~~~ll~~~~--~~~~----~~~~~~~~~~~g~~~~~~~~~~ 183 (820)
+++=|.|+.. ..+|....+.-+|+. |+..|+..+.-.--.|++... +..+ -.+.+-.|.+.|- .+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~-m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW-- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYER-MRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW-- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHH-HHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc--
Confidence 4455666654 456888888889999 998888777666555555432 1111 2223333444442 222222
Q ss_pred HHHHhhcCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHH
Q 003439 184 LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSG 263 (820)
Q Consensus 184 li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 263 (820)
|.|++.+ -+|+..| +...+|..||.|+++--..+.|.+++++-.+...+.+..+|+.+|.+-+- ..+
T Consensus 191 ------K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~ 257 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVG 257 (625)
T ss_pred ------ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hcc
Confidence 3455544 4555444 56679999999999999999999999999999999999999999987643 344
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHH----hcc----CCCCchHHHHHHHHHHhCCChhh-HHHHHH
Q 003439 264 LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF----DQM----MERDVVSWNSIIAAYEQSNDPIT-AHGFFT 334 (820)
Q Consensus 264 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f----~~m----~~~d~~~~~~li~~~~~~g~~~~-A~~~~~ 334 (820)
+.+..+|+...+.||..++|+++...++.|+++.|++-+ .+| .+|...+|..+|..+.+.+++.+ |..++.
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 889999999999999999999999999999988776543 344 23677777777777777766643 344444
Q ss_pred HHHH----cCCCC----CcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhc
Q 003439 335 TMQQ----AGIQP----DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG 406 (820)
Q Consensus 335 ~m~~----~g~~p----d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 406 (820)
+++. +.++| |..-|.+.+..|.+..+.+.|.++++.+..... |...|.. +
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N--------------~~~ig~~------~-- 395 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN--------------WKFIGPD------Q-- 395 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc--------------hhhcChH------H--
Confidence 4432 12222 334456667777777777777777665433220 0000000 0
Q ss_pred CCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCC
Q 003439 407 LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC 480 (820)
Q Consensus 407 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 480 (820)
....-|..+....++....+.-+..|+.|.- .-.-|+..+...+++|....+.++...+++..++..|..
T Consensus 396 ---~~~fYyr~~~~licq~es~~~~~~~Y~~lVP-~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 396 ---HRNFYYRKFFDLICQMESIDVTLKWYEDLVP-SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 0123355667777888888888899999887 778888888888999888888888888888888777643
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=1.9e-12 Score=129.60 Aligned_cols=317 Identities=15% Similarity=0.118 Sum_probs=201.8
Q ss_pred CcccHHHHHHhhc--ChHHHHHHHHHHHHhCCCCChhhhHHHHHH--HHccCChHHH-HHHhcccC--------------
Q 003439 46 REIDFDDLFQSCT--KLHHVKRLHALLVVSGKIKTVFSSTKLVNF--YANLGDLSFS-RHTFDHIS-------------- 106 (820)
Q Consensus 46 ~~~~~~~ll~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~--y~~~g~~~~A-~~~f~~~~-------------- 106 (820)
.+.+=++|++--+ .+..+--++.+|...|+.-+.-+--.|+.. |-...++.-| .+.|-+|.
T Consensus 115 ~V~~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 115 QVETENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hhcchhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 3345566665443 666677788888888877666665555432 2222222222 22333332
Q ss_pred ---------CCCcchHHHHHHHHHhCCCchHHHHHHHHHhhhCCCCCCccccHHHHHhhcCCcchHHHHHHHHHhCCCCc
Q 003439 107 ---------YRNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWD 177 (820)
Q Consensus 107 ---------~~~~~~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~g~~~~ 177 (820)
.++..+|.+||.|+|+-...+.|.+++.+ -.....+.+..+||.+|.+.+-.. ++++...|+...+.||
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE-~~~~k~kv~~~aFN~lI~~~S~~~-~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKE-HRAAKGKVYREAFNGLIGASSYSV-GKKLVAEMISQKMTPN 272 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHH-HHHhhheeeHHhhhhhhhHHHhhc-cHHHHHHHHHhhcCCc
Confidence 23556899999999999999999999998 777788899999999997753322 5889999999999999
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcC
Q 003439 178 VFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 257 (820)
Q Consensus 178 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 257 (820)
.+|+|+++...++.|+++.|++.+ ++++.+|++.|+.|...+|..+|..+.+.
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aa---------------------------lqil~EmKeiGVePsLsSyh~iik~f~re 325 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAA---------------------------LQILGEMKEIGVEPSLSSYHLIIKNFKRE 325 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHH---------------------------HHHHHHHHHhCCCcchhhHHHHHHHhccc
Confidence 999999999999999988887653 45556666666666666666666655555
Q ss_pred CChHH-HHHHHHHHHHh--C--CC----ccHHHHHHHHHHHHccCCHHHHHHHHhccCCC-----------CchHHHHHH
Q 003439 258 DNILS-GLLIHLYIVKH--G--LE----FNLFVSNNLINMYAKFGMMRHALRVFDQMMER-----------DVVSWNSII 317 (820)
Q Consensus 258 ~~~~~-a~~~~~~~~~~--g--~~----~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----------d~~~~~~li 317 (820)
++... +..+...+... | +. .|...+..-++.+.+..+.+-|.++-.-.... ...-|..+.
T Consensus 326 ~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~ 405 (625)
T KOG4422|consen 326 SDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFF 405 (625)
T ss_pred CCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHH
Confidence 55432 22222222221 1 11 12333444444455555555555554433221 112244555
Q ss_pred HHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHH
Q 003439 318 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 392 (820)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~ 392 (820)
...++....+.-+.+|+.|.-.-.-|+..+...+++|....+.++....++..++..| ......+..-++...+
T Consensus 406 ~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g-ht~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 406 DLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG-HTFRSDLREEILMLLA 479 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh-hhhhHHHHHHHHHHHh
Confidence 6666777777777777777777777777777788887777777777777777777666 3333333333333333
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.63 E-value=6.2e-11 Score=124.84 Aligned_cols=456 Identities=12% Similarity=0.075 Sum_probs=310.1
Q ss_pred hcCCChhHHHHHhccCC---CCCcccHHHHHHHHHhCCChhHHHHHHHH----HHHCCCCCChHHHHhHHHhhhcCCChH
Q 003439 189 CRFGLANVARKLFDDMP---VRDSGSWNAMISGYCQSGNAVEALDILDE----MRLEGVSMDPITVASILPVCARSDNIL 261 (820)
Q Consensus 189 ~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~p~~~t~~~ll~a~~~~~~~~ 261 (820)
++..-++.|.++++... ..+...|.+-...=-++|+.+...++..+ +...|+..|...|..=..+|-..|..-
T Consensus 417 arLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~ 496 (913)
T KOG0495|consen 417 ARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVI 496 (913)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChh
Confidence 33444455555554433 23444555544444455555555554433 234455555555555555555555555
Q ss_pred HHHHHHHHHHHhCCCcc--HHHHHHHHHHHHccCCHHHHHHHHhccCC---CCchHHHHHHHHHHhCCChhhHHHHHHHH
Q 003439 262 SGLLIHLYIVKHGLEFN--LFVSNNLINMYAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTM 336 (820)
Q Consensus 262 ~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m 336 (820)
....+....+..|++.. ..+|+.-...+.+.+.++-|+.+|....+ .+...|...+..--..|..++-..+|++
T Consensus 497 TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqk- 575 (913)
T KOG0495|consen 497 TCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQK- 575 (913)
T ss_pred hHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHH-
Confidence 55555555555554321 23444444555555555555555544433 2333444444433344444444444444
Q ss_pred HHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCC---CCch
Q 003439 337 QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV---KDVI 413 (820)
Q Consensus 337 ~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~ 413 (820)
++.. .+.....+-....-+-+.|++..|+.++.+.-+ .+..
T Consensus 576 ----------------------------------av~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnsee 619 (913)
T KOG0495|consen 576 ----------------------------------AVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEE 619 (913)
T ss_pred ----------------------------------HHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHH
Confidence 4443 244445555556666667888888877765542 2556
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003439 414 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMY 493 (820)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 493 (820)
.|-+-+.....+..+++|..+|.+... ..|+...|.--+..---++..++|.+++++.++. ++.-...|-.+.+.+
T Consensus 620 iwlaavKle~en~e~eraR~llakar~---~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~ 695 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARS---ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIE 695 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHH
Confidence 788888888889999999999998866 6677777766666666678899999999888875 333456778888899
Q ss_pred HhcCCHHHHHHHHhhCC--CCCcc-ccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 003439 494 GKCGRIDDAMSLFYQVP--RSSSV-PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR 570 (820)
Q Consensus 494 ~~~g~~~~A~~~~~~~~--~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 570 (820)
-+.++++.|.+.|..-. -|+.+ .|-.|...--+.|+..+|..++++....+ +-|...|...+..-.+.|+.++|..
T Consensus 696 e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 696 EQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998766 34444 48888888888899999999999998863 3356789999999999999999999
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 003439 571 YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 650 (820)
Q Consensus 571 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 650 (820)
+.....++ .+-+...|.--|.+..+.++-..+.+.+++.. .|+.+.-++...+.....++.|+..|++++.++|++
T Consensus 775 lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~ 850 (913)
T KOG0495|consen 775 LMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDN 850 (913)
T ss_pred HHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 98888864 44456778888888888888888888888764 455566677777888889999999999999999999
Q ss_pred cchHHhHHHHhhhcCCcchHHHHHHHHHhCCCCcCCceeEEE
Q 003439 651 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIE 692 (820)
Q Consensus 651 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~ 692 (820)
..++..+-..+...|.-++-.+++++-... .|.-|-.|+.
T Consensus 851 GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~a 890 (913)
T KOG0495|consen 851 GDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQA 890 (913)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHH
Confidence 999999999999999988888888876543 2334555543
No 30
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.62 E-value=2.4e-12 Score=139.73 Aligned_cols=536 Identities=9% Similarity=0.030 Sum_probs=297.0
Q ss_pred CCCCCcccHHHHHHhhc---ChHHHHHHHHHHHHhCCCCChhhhHHHHHHHHccCChHHHHHHhcccCCCCcchHHHHHH
Q 003439 42 ENESREIDFDDLFQSCT---KLHHVKRLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISYRNVYTWNSMIS 118 (820)
Q Consensus 42 ~~~~~~~~~~~ll~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 118 (820)
+..|+.+||.+++..++ +.+.+. ++..|....+.-+..+++.++......++.+.|. +|-..+|+.|..
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ 91 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLK 91 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHH
Confidence 56677777777775544 444444 6666666666666666777777666666655554 567778999999
Q ss_pred HHHhCCCchHHHHHHHHHh-------hhCCCCCCccccHHHHHhhcCCcc----------hHHHHHHHHHhCCCCcHHHH
Q 003439 119 VYVRCGRLSEAVDCFYQFT-------LTSGLRPDFYTFPPVLKACRNLVD----------GKKIHCSVLKLGFEWDVFVA 181 (820)
Q Consensus 119 ~~~~~g~~~~A~~l~~~~m-------~~~~~~p~~~t~~~ll~~~~~~~~----------~~~~~~~~~~~g~~~~~~~~ 181 (820)
+|.+.|+... ++.-++.| ...|+.-...-|...+.+|...-. -+.+++..++.+....+..+
T Consensus 92 ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~ 170 (1088)
T KOG4318|consen 92 AYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAW 170 (1088)
T ss_pred HHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccc
Confidence 9999998754 22222211 122333334444444455543322 34455666665522111111
Q ss_pred HHHHHHhhcC-----CChhHHHHHhccCC-CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhh
Q 003439 182 ASLLHMYCRF-----GLANVARKLFDDMP-VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCA 255 (820)
Q Consensus 182 ~~li~~y~~~-----g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 255 (820)
+.=...+.+. ..+++-...-.... .++..+|.+++..-.-+|+.+.|..++.+|++.|.+.+..-|..+|-+
T Consensus 171 ~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g-- 248 (1088)
T KOG4318|consen 171 NAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG-- 248 (1088)
T ss_pred cchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc--
Confidence 1111111111 11222222222222 478899999999999999999999999999999999999988888866
Q ss_pred cCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChh-----hHH
Q 003439 256 RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI-----TAH 330 (820)
Q Consensus 256 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~-----~A~ 330 (820)
.++......+..-|...|+.|+..|+...+-...+.|....+....+.-..-....+..+..+...+.+.+ -..
T Consensus 249 -~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~ 327 (1088)
T KOG4318|consen 249 -INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVI 327 (1088)
T ss_pred -CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 78888899999999999999999999888877777666433322211111111222333333321111111 122
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCC--cCcchhHHhHHHHHHHhcCCHHHHHHHHhcCC
Q 003439 331 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW--FMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 408 (820)
Q Consensus 331 ~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 408 (820)
..+++..-.|+......| ++..-....|.-+...++-+.+...-. -+.++..+..++ ...|.+..
T Consensus 328 ~s~k~~fLlg~d~~~aiw-s~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~l------------rqyFrr~e 394 (1088)
T KOG4318|consen 328 GSTKKLFLLGTDILEAIW-SMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALL------------RQYFRRIE 394 (1088)
T ss_pred HHhhHHHHhccccchHHH-HHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHH------------HHHHHHHH
Confidence 223333333443333222 222222335666666666666533210 011222233333 33344333
Q ss_pred CCCch-HHHHHHHHHHH---cCChHHHHHHHHhh------------hhc---CCCCC-------CcccHhhHHHHhhccC
Q 003439 409 VKDVI-SWNTLITGYAQ---NGLASEAIEVFQMM------------EEC---NEINP-------NQGTYVSILPAYSHVG 462 (820)
Q Consensus 409 ~~~~~-~~~~li~~~~~---~g~~~~A~~l~~~m------------~~~---~g~~p-------d~~t~~~ll~a~~~~~ 462 (820)
.+... .++ .-.+... .....+..++.... ... ....| =...-..++..|...-
T Consensus 395 ~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~ 473 (1088)
T KOG4318|consen 395 RHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEY 473 (1088)
T ss_pred hhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 32111 111 1111111 11111111221111 110 00001 0011233444455444
Q ss_pred ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc------cchHHHHHHhcCChHHHHHH
Q 003439 463 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP------WNAIISCHGIHGQGDKALNF 536 (820)
Q Consensus 463 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~------~~~li~~~~~~g~~~~A~~l 536 (820)
+..+++..-+.....-+ ...|..||+.......+++|..+.++...+|... +..+.....+.+...++..+
T Consensus 474 n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~ti 550 (1088)
T KOG4318|consen 474 NKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTI 550 (1088)
T ss_pred HHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHH
Confidence 44444443333322222 2568899999999999999999999888666543 77888888999999999999
Q ss_pred HHHHHHcCC-CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 003439 537 FRQMLDEGV-RPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 611 (820)
Q Consensus 537 ~~~m~~~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m 611 (820)
+++|.+.-. .|+ ..++-.+++.-+..|+.+.-.++++-+.. .|+.-+ .-++....+.++...|.+.++..
T Consensus 551 L~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvs-lgl~et----gPl~~vhLrkdd~s~a~ea~e~~ 622 (1088)
T KOG4318|consen 551 LYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVS-LGLSET----GPLWMVHLRKDDQSAAQEAPEPE 622 (1088)
T ss_pred HhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHH-hhhhhc----ccceEEEeeccchhhhhhcchHH
Confidence 999987422 333 34667778888888988888888877663 355442 33444455667777776665543
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=2.6e-13 Score=136.17 Aligned_cols=426 Identities=14% Similarity=0.148 Sum_probs=280.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHh-HHHhhhcCCChHHHHHHHHHHHHhCCCcc----HHHHHHHHHHH
Q 003439 215 MISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS-ILPVCARSDNILSGLLIHLYIVKHGLEFN----LFVSNNLINMY 289 (820)
Q Consensus 215 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y 289 (820)
|..-|.-+....+|+..|+-..+...-||.-.+.. +-..+.+..++..|..++...+..-...+ +.+.+.+--.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 44566677788899999999888888888765432 33556677888899999888877543322 33455555567
Q ss_pred HccCCHHHHHHHHhccCC--CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHH--------HHHHHHHhcC
Q 003439 290 AKFGMMRHALRVFDQMME--RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV--------SLTSIVAQLN 359 (820)
Q Consensus 290 ~~~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~--------~ll~a~~~~~ 359 (820)
.+.|.+++|..-|+...+ ||..+--.|+-.+..-|+.++..+.|.+|..--..||..-|. .++.-..+..
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 888999999999998755 677665556666677889999999999998766556555441 1111111100
Q ss_pred cchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCch---HHH------------------HH
Q 003439 360 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI---SWN------------------TL 418 (820)
Q Consensus 360 ~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~------------------~l 418 (820)
.+..+.+.. ..+..- + +-.|.++..-+..+|-. -|. .-
T Consensus 367 -------~lk~~ek~~--ka~aek--~----------i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~k 425 (840)
T KOG2003|consen 367 -------HLKNMEKEN--KADAEK--A----------IITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINK 425 (840)
T ss_pred -------HHHHHHHhh--hhhHHH--H----------HHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhH
Confidence 011111111 000000 0 00001111111111100 000 01
Q ss_pred HHHHHHcCChHHHHHHHHhhhhcCCCCC-------------------------------CcccHhh-----HHHHhhccC
Q 003439 419 ITGYAQNGLASEAIEVFQMMEECNEINP-------------------------------NQGTYVS-----ILPAYSHVG 462 (820)
Q Consensus 419 i~~~~~~g~~~~A~~l~~~m~~~~g~~p-------------------------------d~~t~~~-----ll~a~~~~~ 462 (820)
..-|.++|+++.|+++++-..+ ..-+. +...|+. --+.....|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~-kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEK-KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHh-ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecC
Confidence 1234555666655555544433 11110 0011111 111122357
Q ss_pred ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHH
Q 003439 463 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQ 539 (820)
Q Consensus 463 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 539 (820)
++++|.+.+.+.+...-......|| +.-.+-+.|++++|++.|-++. ..+....-.+...|....++.+|++++-+
T Consensus 505 d~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 8999999999888764333333333 2334678899999999997765 56666677788889999999999999977
Q ss_pred HHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH
Q 003439 540 MLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDA 617 (820)
Q Consensus 540 m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~ 617 (820)
... +.| |...+.-|...|-+.|+-.+|.+.+-.--+ -++-+.++..-|..-|....-.++|..+|++. -+.|+.
T Consensus 584 ~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~ 659 (840)
T KOG2003|consen 584 ANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ 659 (840)
T ss_pred hcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH
Confidence 766 556 456788888899999999999988754331 34557888888888899999999999999998 478999
Q ss_pred HHHHHHHHHHH-hcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCc
Q 003439 618 SIWGALLGACR-IHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKW 667 (820)
Q Consensus 618 ~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 667 (820)
+-|..++..|. +.|+++.|...|+..-..-|.+....-.|..++...|.-
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 99999998875 679999999999999999999999999999988888863
No 32
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.61 E-value=4.4e-12 Score=146.42 Aligned_cols=385 Identities=8% Similarity=-0.010 Sum_probs=258.5
Q ss_pred HHHHHHHccCCHHHHHHHHhccCCCCchHHH-HH--HHHHHhCCChhhHHHHHHHHHHcCCCCC-cchHHHHHHHHHhcC
Q 003439 284 NLINMYAKFGMMRHALRVFDQMMERDVVSWN-SI--IAAYEQSNDPITAHGFFTTMQQAGIQPD-LLTLVSLTSIVAQLN 359 (820)
Q Consensus 284 ~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~-~l--i~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~ 359 (820)
.++..+...|+.++|+..+++...|+...+. .+ ...|...|++++|+++|+++.+. .|+ ...+..+...+...+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcC
Confidence 4555555556666666666655544322222 22 33455556666666666666554 222 233344445555555
Q ss_pred cchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCC---CchHHHHHHHHHHHcCChHHHHHHHH
Q 003439 360 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK---DVISWNTLITGYAQNGLASEAIEVFQ 436 (820)
Q Consensus 360 ~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~ 436 (820)
+.++|.+....+.+. .|+...+..++..+...++..+|.+.++++.+. +...+..+..++.+.|-...|+++..
T Consensus 151 q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 151 RGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred CHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 666666655555543 244444555555555566666699999888643 56677888899999999999987766
Q ss_pred hhhhcCCCCCCcccHhh-----------HHHHh-hcc----CC---hhHHHHHHHHHHHh-CCCCc--hhHHHHH---HH
Q 003439 437 MMEECNEINPNQGTYVS-----------ILPAY-SHV----GA---LRQGIKIHARVIKN-CLCFD--VFVATCL---VD 491 (820)
Q Consensus 437 ~m~~~~g~~pd~~t~~~-----------ll~a~-~~~----~~---~~~a~~i~~~~~~~-g~~~~--~~~~~~l---i~ 491 (820)
+- |+.++=.. .+.-- ... .. .+.|..-++.+... +-.|. .....+. +-
T Consensus 228 ~~-------p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~ 300 (822)
T PRK14574 228 EN-------PNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLG 300 (822)
T ss_pred hC-------ccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHH
Confidence 53 33332111 11111 111 11 23344444544441 22232 1223333 34
Q ss_pred HHHhcCCHHHHHHHHhhCCCCC--cccc--chHHHHHHhcCChHHHHHHHHHHHHcCC-----CCChhHHHHHHHHHHhc
Q 003439 492 MYGKCGRIDDAMSLFYQVPRSS--SVPW--NAIISCHGIHGQGDKALNFFRQMLDEGV-----RPDHITFVSLLTACSHS 562 (820)
Q Consensus 492 ~y~~~g~~~~A~~~~~~~~~~~--~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~-----~p~~~t~~~ll~a~~~~ 562 (820)
++.+.|+..++++.|+.+.... +..| -++..+|...+++++|+.+|+++....- .++......|.-++...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 5678899999999999999443 2334 5678899999999999999999977431 12233357789999999
Q ss_pred CCHHHHHHHHHHhHHhhC----------CCCCh---hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003439 563 GLVSEGQRYFHMMQEEFG----------IKPHL---KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGAC 627 (820)
Q Consensus 563 g~~~~a~~~~~~m~~~~g----------~~p~~---~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~ 627 (820)
+++++|..+++.+.+... -.|+. ..+..++..+...|++.+|++.++++ ...| |...+..+...+
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~ 460 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIY 460 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999986311 02332 34556678889999999999999998 3344 667999999999
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 628 RIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 628 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
...|++.+|+..++.+..++|++......++..+...|+|++|..+.+...+.
T Consensus 461 ~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 461 LARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999888776
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.56 E-value=3e-10 Score=124.72 Aligned_cols=576 Identities=13% Similarity=0.094 Sum_probs=318.8
Q ss_pred cCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHhhhCCCCCCcc-ccHHHHHhhcCCcc---hHH
Q 003439 92 LGDLSFSRHTFDHISY---RNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFY-TFPPVLKACRNLVD---GKK 164 (820)
Q Consensus 92 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~---~~~ 164 (820)
.|++++|.+++.++.. .+...|..|...|-+.|+.++++..+ |...-+.|... .|..+-.-....+. |.-
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~---llAAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFW---LLAAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHH---HHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 3888899888887743 35677888888888888888887655 44444555433 22222222223332 444
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHhhcCCChhHHHHHhccCCCCCc-ccH-------HHHHHHHHhCCChhHHHHHHHHHH
Q 003439 165 IHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDS-GSW-------NAMISGYCQSGNAVEALDILDEMR 236 (820)
Q Consensus 165 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~-~~~-------~~li~~~~~~g~~~~A~~l~~~m~ 236 (820)
.+...++.. +++....---..+|-+.|+...|..-|.++-+.+. +.| -.++..+...++-+.|++.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455555543 33333333345567777777777666665543222 111 123445555566666777666655
Q ss_pred HC-CCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHh---------------------------CCCccHHH-HHHHHH
Q 003439 237 LE-GVSMDPITVASILPVCARSDNILSGLLIHLYIVKH---------------------------GLEFNLFV-SNNLIN 287 (820)
Q Consensus 237 ~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---------------------------g~~~~~~~-~~~li~ 287 (820)
.. +-..+..+++.++..+.+....+.+......+... ++.++..+ ...+--
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 42 11222334444445555555555555444443331 12222333 111111
Q ss_pred HHHccCCHHHHHHHHhcc----CCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchh
Q 003439 288 MYAKFGMMRHALRVFDQM----MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 363 (820)
Q Consensus 288 ~y~~~g~~~~A~~~f~~m----~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 363 (820)
...+.+...+++.-|-.. +..++..|.-+..+|.+.|++.+|+.+|..+...-.--+.+.|-.+...+-..|..+.
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 112233333333333221 1124456778888999999999999999998876555567788888888888999999
Q ss_pred hhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCch-----HH-------HHHHHHHHHcCChHHH
Q 003439 364 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI-----SW-------NTLITGYAQNGLASEA 431 (820)
Q Consensus 364 a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-----~~-------~~li~~~~~~g~~~~A 431 (820)
|.+.+..++... +.+..+..+|...|-+.|+.++|.+.+..+..+|.. .| --....|.+.|+.++=
T Consensus 468 A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 468 AIEFYEKVLILA--PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999988875 666777888899999999999999999988766521 11 1233456677877765
Q ss_pred HHHHHhhhh----cCC-----------------CCCCcccHhhHHHHhhccCChhHHHHHH------HHHHHhCCCCch-
Q 003439 432 IEVFQMMEE----CNE-----------------INPNQGTYVSILPAYSHVGALRQGIKIH------ARVIKNCLCFDV- 483 (820)
Q Consensus 432 ~~l~~~m~~----~~g-----------------~~pd~~t~~~ll~a~~~~~~~~~a~~i~------~~~~~~g~~~~~- 483 (820)
+..-..|.. ..- ..-...+...++.+-.+.++.....+-. ......|+..+.
T Consensus 546 i~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw 625 (895)
T KOG2076|consen 546 INTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW 625 (895)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence 544444322 000 1112222233333333333322111111 111112222221
Q ss_pred -hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc---------cchHHHHHHhcCChHHHHHHHHHHHHc-CC--CCChh
Q 003439 484 -FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP---------WNAIISCHGIHGQGDKALNFFRQMLDE-GV--RPDHI 550 (820)
Q Consensus 484 -~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~---------~~~li~~~~~~g~~~~A~~l~~~m~~~-g~--~p~~~ 550 (820)
..+.-+|..+++.++.++|+.+...+...+... -..++.+....+++..|...++.|... +. .|...
T Consensus 626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~ 705 (895)
T KOG2076|consen 626 FELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQL 705 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 244567778888999999998887766332222 334556667788888888888888764 11 23222
Q ss_pred -HHHHHHHHHHh-----------------------------------cCCHHHHHHHHHHhHHhhCCCCChhHHHH-HHH
Q 003439 551 -TFVSLLTACSH-----------------------------------SGLVSEGQRYFHMMQEEFGIKPHLKHYGC-MVD 593 (820)
Q Consensus 551 -t~~~ll~a~~~-----------------------------------~g~~~~a~~~~~~m~~~~g~~p~~~~~~~-li~ 593 (820)
.|+...+.... .+.+..|...+-... ...|+...++. |.-
T Consensus 706 ~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~---~~~pd~Pl~nl~lgl 782 (895)
T KOG2076|consen 706 NLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAF---RQNPDSPLINLCLGL 782 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHH---HhCCCCcHHHHHHHH
Confidence 33323333333 334445555443333 23444322222 211
Q ss_pred HHH----------HcCCHHHHHHHHHhC-CC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc-------
Q 003439 594 LFG----------RAGHLGMAHNFIQNM-PV-RP--DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG------- 652 (820)
Q Consensus 594 ~~~----------~~g~~~eA~~~~~~m-~~-~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------- 652 (820)
++. |.-.+-.+..++.+- .. .+ -..++-.+..+|.+-|-+..|+..|++++++.|.+.+
T Consensus 783 afih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~ 862 (895)
T KOG2076|consen 783 AFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNY 862 (895)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcc
Confidence 111 111223333343322 11 11 2335556777788888888888888888887654322
Q ss_pred -----hHHhHHHHhhhcCCcchHHHHHHH
Q 003439 653 -----YYVLMSNIYANVGKWEGVDEVRSL 676 (820)
Q Consensus 653 -----~~~~l~~~y~~~g~~~~A~~~~~~ 676 (820)
+-..|.-+|-+.|+..-|.++.++
T Consensus 863 dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 863 DLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred cHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 122456678888888887777653
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.52 E-value=2.8e-10 Score=124.95 Aligned_cols=304 Identities=13% Similarity=0.173 Sum_probs=164.7
Q ss_pred HhcCcchhhhhHHHHHHHhCC-cCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCC----CchHHHHHHHHHHHcCChHH
Q 003439 356 AQLNDCRNSRSVHGFIMRRGW-FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK----DVISWNTLITGYAQNGLASE 430 (820)
Q Consensus 356 ~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~ 430 (820)
.+....+....+...+.+... ...+...+.-+.++|...|++.+|.++|..+... +...|--+...|...|.+++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 344444444555555544441 1223455666666666677777777766666532 45566666666666677777
Q ss_pred HHHHHHhhhhcCCCCCCcccH-hhHHHHhhccCChhHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHH
Q 003439 431 AIEVFQMMEECNEINPNQGTY-VSILPAYSHVGALRQGIKIHARVI--------KNCLCFDVFVATCLVDMYGKCGRIDD 501 (820)
Q Consensus 431 A~~l~~~m~~~~g~~pd~~t~-~~ll~a~~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~li~~y~~~g~~~~ 501 (820)
|++.|+.... ..|+..-. .++-..+.+.|+.++|.+.+..+. ..+..|+....--..+.|.+.|+.++
T Consensus 468 A~e~y~kvl~---~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 468 AIEFYEKVLI---LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHh---cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 7777666665 45543322 233344556666666666665532 22233444444445555556665554
Q ss_pred HHHHHhhCCC---------------------------------------------------------------CCc--cc
Q 003439 502 AMSLFYQVPR---------------------------------------------------------------SSS--VP 516 (820)
Q Consensus 502 A~~~~~~~~~---------------------------------------------------------------~~~--~~ 516 (820)
-..+-..|.. .+. .-
T Consensus 545 fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsidd 624 (895)
T KOG2076|consen 545 FINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDD 624 (895)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHH
Confidence 3322111100 000 00
Q ss_pred c----chHHHHHHhcCChHHHHHHHHHHHHcCC--CCChh--HH-HHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh--
Q 003439 517 W----NAIISCHGIHGQGDKALNFFRQMLDEGV--RPDHI--TF-VSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL-- 585 (820)
Q Consensus 517 ~----~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~--t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~-- 585 (820)
| .-++..+++.+.+++|+.+...+.+..+ .++.. .+ ...+.++...+++.+|..+++.|...++...++
T Consensus 625 wfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q 704 (895)
T KOG2076|consen 625 WFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQ 704 (895)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHH
Confidence 2 3355667777888888888777776432 22221 22 234556667788888888888777664443332
Q ss_pred -hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHh
Q 003439 586 -KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGALLGA--CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 661 (820)
Q Consensus 586 -~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 661 (820)
..|++....+.+.|+-.--..++... ..+|+......++.+ ....+.+.-|...+-+++...|++|-...+|+-++
T Consensus 705 ~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglaf 784 (895)
T KOG2076|consen 705 LNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAF 784 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 35555555555555444444444333 223332222222222 34556677788888888888888887777666554
Q ss_pred h
Q 003439 662 A 662 (820)
Q Consensus 662 ~ 662 (820)
-
T Consensus 785 i 785 (895)
T KOG2076|consen 785 I 785 (895)
T ss_pred H
Confidence 3
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.50 E-value=6.3e-14 Score=145.36 Aligned_cols=255 Identities=14% Similarity=0.153 Sum_probs=112.6
Q ss_pred HHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHH-HhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 003439 419 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP-AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG 497 (820)
Q Consensus 419 i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g 497 (820)
...+.+.|++++|++++++... ....|+...|..++. .+...++.+.|.+.++.+...+.. ++..+..++.. ...+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~-~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQ-KIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 4455667777777777754333 222455555544333 445567777888887777765533 55566777776 6888
Q ss_pred CHHHHHHHHhhCC--CCCccccchHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003439 498 RIDDAMSLFYQVP--RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHITFVSLLTACSHSGLVSEGQRYFHM 574 (820)
Q Consensus 498 ~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 574 (820)
++++|.++++..- .++...|..++..+...++++++.++++++.... .+++...|..+...+.+.|+.++|.+.++.
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8999988887664 4556668888888999999999999999987643 234566788888899999999999999999
Q ss_pred hHHhhCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 003439 575 MQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNMP--VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 651 (820)
Q Consensus 575 m~~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 651 (820)
..+. .|+ ......++.++...|+.+++.++++... .+.|...|..+..++...|+.++|...++++....|+|+
T Consensus 172 al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 8854 564 6788889999999999999888887661 234566889999999999999999999999999999999
Q ss_pred chHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 652 GYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 652 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
.....+++++...|+.++|.+++++...
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999887643
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=2.6e-10 Score=116.63 Aligned_cols=213 Identities=12% Similarity=0.128 Sum_probs=167.1
Q ss_pred cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHH
Q 003439 461 VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFF 537 (820)
Q Consensus 461 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 537 (820)
.|+.-.+.+-++.+++....++. .|--+..+|....+.++..+.|+... +.|..+|.--...+.-.+++++|+.=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 46666777777777776544332 25556667888888888888887665 455666777777777778899999999
Q ss_pred HHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC
Q 003439 538 RQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP 615 (820)
Q Consensus 538 ~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p 615 (820)
++.+. +.|+. ..|.-+.-+..+.+.++++...|+..+++ ++-.+++|+-....+...++++.|.+.|+.. .++|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99988 67754 57888888888899999999999999875 4555678899999999999999999999876 4555
Q ss_pred C---------HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 616 D---------ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 616 ~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
+ +.+-.+++-.-. .+++..|+.+++++++++|....+|..|+.+-...|+.++|.++|++...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4 223333333323 38999999999999999999999999999999999999999999988654
No 37
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.45 E-value=2.8e-10 Score=124.13 Aligned_cols=128 Identities=11% Similarity=0.008 Sum_probs=83.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHH
Q 003439 553 VSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP-----VRPDASIWGALLGAC 627 (820)
Q Consensus 553 ~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~-----~~p~~~~~~~ll~~~ 627 (820)
+.++..|.+.-+..++...-+... .+-+ | ..|..||+.+.+..++++|..+.++.. ..-|..-+..+.+..
T Consensus 463 ~ql~l~l~se~n~lK~l~~~ekye-~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL 538 (1088)
T KOG4318|consen 463 NQLHLTLNSEYNKLKILCDEEKYE-DLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLL 538 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHH
Confidence 344555555555555554433332 2111 1 568888888888888888888888773 223444566777778
Q ss_pred HhcCChhHHHHHHHHHhc---cCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCCCc
Q 003439 628 RIHGNMELGAVASDRLFE---VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK 684 (820)
Q Consensus 628 ~~~g~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~ 684 (820)
.+++....+..+.+++.+ ..|.-......+.+--+..|+.+...+..+-....|+..
T Consensus 539 ~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 539 QRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 888888888888777655 223333444556667777888888888888887777755
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2.5e-10 Score=116.08 Aligned_cols=191 Identities=13% Similarity=0.165 Sum_probs=153.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHH
Q 003439 483 VFVATCLVDMYGKCGRIDDAMSLFYQVPR---SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTA 558 (820)
Q Consensus 483 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a 558 (820)
+.+...+.+-|+-.++.++|...|++..+ +-...|+-|..-|....+...|++-+++.++ +.| |...|..|..+
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQA 407 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHH
Confidence 34556666777777888888888887663 3345588888899999999999999999998 666 66799999999
Q ss_pred HHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhH
Q 003439 559 CSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNMP--VRPDASIWGALLGACRIHGNMEL 635 (820)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~ 635 (820)
|.-.+...-|+-+|++.. .++| |...|.+|.+.|.+.+++++|++-|.+.- ..-+...+..|...|.+.++.++
T Consensus 408 Yeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 999999999999998877 4566 57899999999999999999999998872 12344788899999999999999
Q ss_pred HHHHHHHHhc-------cCCCCcchHHhHHHHhhhcCCcchHHHHHHHHH
Q 003439 636 GAVASDRLFE-------VDSENVGYYVLMSNIYANVGKWEGVDEVRSLAR 678 (820)
Q Consensus 636 a~~~~~~~~~-------~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 678 (820)
|...+++-++ .+|+-..+..-|+.-+.+.+++++|..+-....
T Consensus 485 Aa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 485 AAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 9999998776 334334445568888999999999987765543
No 39
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=5.4e-09 Score=106.55 Aligned_cols=478 Identities=11% Similarity=0.097 Sum_probs=345.7
Q ss_pred cCCChhHHHHHhccCC---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHH
Q 003439 190 RFGLANVARKLFDDMP---VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLI 266 (820)
Q Consensus 190 ~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 266 (820)
..+++..|+.+|++.. .++...|---+..=.++..+..|..++++....=...|..-| --+-.=-..|++..|+++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHH
Confidence 3567788999998876 356777888888888999999999999998764333333322 223333467899999999
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhcc--CCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCC
Q 003439 267 HLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM--MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD 344 (820)
Q Consensus 267 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m--~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 344 (820)
|+...+ ..|+...|++.|+.=.+...++.|+.++++. ..|++.+|--....=-++|+...|..+|....+. -.|
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~ 239 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGD 239 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhh
Confidence 998876 4899999999999999999999999999986 4599999999888888999999999999887653 223
Q ss_pred cchHHHHHHHHH----hcCcchhhhhHHHHHHHhCCcCcc--hhHHhHHHHHHHhcCCHHHHHHHH--------hcCCCC
Q 003439 345 LLTLVSLTSIVA----QLNDCRNSRSVHGFIMRRGWFMED--VIIGNAVVDMYAKLGIINSACAVF--------EGLPVK 410 (820)
Q Consensus 345 ~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~~g~~~~~--~~~~~~li~~y~~~g~~~~A~~~f--------~~~~~~ 410 (820)
...-..+..+++ .....+.++.++..++.. ++.+ ..++..+...--+.|+........ +.+...
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 333444445554 345678888999988876 3444 456666666656667654443332 222222
Q ss_pred ---CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcc-------cHhhHHHHh---hccCChhHHHHHHHHHHHh
Q 003439 411 ---DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG-------TYVSILPAY---SHVGALRQGIKIHARVIKN 477 (820)
Q Consensus 411 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-------t~~~ll~a~---~~~~~~~~a~~i~~~~~~~ 477 (820)
|-.+|--.+..--..|+.+...++|++... +++|-.. .|.-+=-+| ....+.+.++++++..++.
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa--nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIA--NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc--cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 556777777777788999999999999875 5767331 121111122 3468899999999999883
Q ss_pred CCCCchhHHHHHHHHHH----hcCCHHHHHHHHhhCC--CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC-Chh
Q 003439 478 CLCFDVFVATCLVDMYG----KCGRIDDAMSLFYQVP--RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHI 550 (820)
Q Consensus 478 g~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ 550 (820)
++....++..+=-||+ ++.++..|.+++.... .|-...+-..|..-.+.++++....++++.++ ..| |..
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~ 472 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCY 472 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhH
Confidence 4555667776666665 6789999999998766 45556677777777889999999999999999 556 567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-
Q 003439 551 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGALLGACR- 628 (820)
Q Consensus 551 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~- 628 (820)
+|......=...|+.+.|..+|.....+..+......|.+.|+.=...|.++.|..++++. ...+...+|-++..--.
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s 552 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEAS 552 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcc
Confidence 8888888888899999999999988876444445567888888888999999999999987 34455558887765433
Q ss_pred ----hcC-----------ChhHHHHHHHHHhc----cCCCCcc--hHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 629 ----IHG-----------NMELGAVASDRLFE----VDSENVG--YYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 629 ----~~g-----------~~~~a~~~~~~~~~----~~p~~~~--~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
+.+ +...|..+|+++.. ..|.... ..-..-++-...|...+...+-.+|.+
T Consensus 553 ~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 553 ASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred ccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 333 55678888888764 3342221 122334455566777777777766654
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=2.8e-11 Score=128.77 Aligned_cols=275 Identities=15% Similarity=0.090 Sum_probs=213.4
Q ss_pred CHHHHHHHHhcCCCC--Cch-HHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCC-CcccHhhHHHHhhccCChhHHHHHH
Q 003439 396 IINSACAVFEGLPVK--DVI-SWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIKIH 471 (820)
Q Consensus 396 ~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~ 471 (820)
+..+|...|..++.. |+- ....+..+|...+++++|.++|+...+...... +..+|.++|--+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 467888888886643 433 334567889999999999999999987222222 445677766543321 112222
Q ss_pred -HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---ccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003439 472 -ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS---SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 547 (820)
Q Consensus 472 -~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 547 (820)
+.+++. -+..+.+|.++.+.|.-+++.+.|++.|++..+-| ..+|+-+..-+.....+|+|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 223332 24467899999999999999999999999988544 45677777778888999999999999877 677
Q ss_pred Chh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 003439 548 DHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGAL 623 (820)
Q Consensus 548 ~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~l 623 (820)
... .|..+...|.+.++++.|.-.|+... .+.|. .....++...+-+.|+.|+|+++++++ ...| |+..--..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 664 88889999999999999999999877 56774 566777888999999999999999988 3344 44444445
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 624 LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 624 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+..+...+++++|...+|++.++-|++...|.+++.+|.+.|+.+.|..-|..|.+.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 666778899999999999999999999999999999999999999999888877655
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=2e-11 Score=129.85 Aligned_cols=245 Identities=12% Similarity=0.116 Sum_probs=196.4
Q ss_pred CChHHHHHHHHhhhhcCCCCCC-cccHhhHHHHhhccCChhHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHH
Q 003439 426 GLASEAIEVFQMMEECNEINPN-QGTYVSILPAYSHVGALRQGIKIHARVIKNCL--CFDVFVATCLVDMYGKCGRIDDA 502 (820)
Q Consensus 426 g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A 502 (820)
-+..+|+..|..... ..+| ......+..+|...+++++++.+|+.+.+... .-+..+|++.+--+-+.=.+..-
T Consensus 333 y~~~~A~~~~~klp~---h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 333 YNCREALNLFEKLPS---HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHHhhHH---hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH
Confidence 356899999999554 3444 35556778899999999999999999977532 23677888776544332222221
Q ss_pred HHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCC
Q 003439 503 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 581 (820)
Q Consensus 503 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~ 581 (820)
-+-+-.+.+..+.+|.++..+|..+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+...
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----- 482 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----- 482 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----
Confidence 1222233356678899999999999999999999999999 778 56799999888999999999999997654
Q ss_pred CCChhHHHHH---HHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHh
Q 003439 582 KPHLKHYGCM---VDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVL 656 (820)
Q Consensus 582 ~p~~~~~~~l---i~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 656 (820)
..++.+|+++ .-.|.|.++++.|+-.|+++ .+.|. .++...+...+.+.|+.|+|++++++++.++|.|+-.-+.
T Consensus 483 ~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 483 GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 4566677765 56789999999999999988 67775 4566677778899999999999999999999999999999
Q ss_pred HHHHhhhcCCcchHHHHHHHHHhC
Q 003439 657 MSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 657 l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.+.++...+++++|...++++++.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh
Confidence 999999999999999999999865
No 42
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.38 E-value=1e-07 Score=101.18 Aligned_cols=389 Identities=11% Similarity=0.072 Sum_probs=288.7
Q ss_pred hcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCC---CCchHHHHHHHHHHhCCChhhHHH
Q 003439 255 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHG 331 (820)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~ 331 (820)
....+.+.|+-++...++.- +.+...|. +|++..-++.|.++++...+ .+...|.+-...--++|+.+...+
T Consensus 387 VelE~~~darilL~rAvecc-p~s~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 387 VELEEPEDARILLERAVECC-PQSMDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred HhccChHHHHHHHHHHHHhc-cchHHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 34445555666666666542 22333333 44555667777777776644 466677666666667788877777
Q ss_pred HHHH----HHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcc--hhHHhHHHHHHHhcCCHHHHHHHHh
Q 003439 332 FFTT----MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED--VIIGNAVVDMYAKLGIINSACAVFE 405 (820)
Q Consensus 332 ~~~~----m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~--~~~~~~li~~y~~~g~~~~A~~~f~ 405 (820)
++.+ +...|+..+...|..=..+|-..|..-.+..|...++..| .+.. ..+++.-.+.+.+.+.++-|+.+|.
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigig-vEeed~~~tw~~da~~~~k~~~~~carAVya 540 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIG-VEEEDRKSTWLDDAQSCEKRPAIECARAVYA 540 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhc-cccchhHhHHhhhHHHHHhcchHHHHHHHHH
Confidence 7654 4567888888888888888988899888888888888887 4432 4578888888999999999999887
Q ss_pred cCCC---CCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCccc-HhhHHHHhhccCChhHHHHHHHHHHHhCCCC
Q 003439 406 GLPV---KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT-YVSILPAYSHVGALRQGIKIHARVIKNCLCF 481 (820)
Q Consensus 406 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 481 (820)
...+ .+...|...+..--..|..++...+|++... ..|.... +.......-..|++..|+.++..+.+....
T Consensus 541 ~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~---~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn- 616 (913)
T KOG0495|consen 541 HALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVE---QCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN- 616 (913)
T ss_pred HHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHH---hCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-
Confidence 6543 3667788777777778889999999999877 4454433 333444566679999999999998887644
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHH
Q 003439 482 DVFVATCLVDMYGKCGRIDDAMSLFYQVP--RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTA 558 (820)
Q Consensus 482 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a 558 (820)
+..++-+-+........++.|+.+|.+.. .+....|.--+..---.++.++|++++++.++ .-|+-. .|..+...
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi 694 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQI 694 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHH
Confidence 67788888888999999999999998776 45555677777777778899999999999888 577764 77777888
Q ss_pred HHhcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhH
Q 003439 559 CSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNMP--VRPDASIWGALLGACRIHGNMEL 635 (820)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~ 635 (820)
+.+.++++.|.+.|..=. ..-|+ +..|-.|.++=-+.|.+-.|..++++.. .+.+...|-..|..-.++|+.+.
T Consensus 695 ~e~~~~ie~aR~aY~~G~---k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~ 771 (913)
T KOG0495|consen 695 EEQMENIEMAREAYLQGT---KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQ 771 (913)
T ss_pred HHHHHHHHHHHHHHHhcc---ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHH
Confidence 889999999998876533 22343 4577778888888999999999998873 23366799999999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHhHH
Q 003439 636 GAVASDRLFEVDSENVGYYVLMS 658 (820)
Q Consensus 636 a~~~~~~~~~~~p~~~~~~~~l~ 658 (820)
|..+..++++--|.+...+.--+
T Consensus 772 a~~lmakALQecp~sg~LWaEaI 794 (913)
T KOG0495|consen 772 AELLMAKALQECPSSGLLWAEAI 794 (913)
T ss_pred HHHHHHHHHHhCCccchhHHHHH
Confidence 99999888887776555444333
No 43
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=3.1e-09 Score=108.29 Aligned_cols=417 Identities=12% Similarity=0.118 Sum_probs=298.6
Q ss_pred HHHccCCHHHHHHHHhccCC---CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhh
Q 003439 288 MYAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 364 (820)
Q Consensus 288 ~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 364 (820)
-=-..+++..|+.+|++... +++..|---+..=.++.....|..++++....=...|.. +-.-+..=-.+|++..|
T Consensus 82 wEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 82 WEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGA 160 (677)
T ss_pred HHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHH
Confidence 33445677778888887754 567778777888888888888888888876532222222 22333344567888889
Q ss_pred hhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCC--CCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcC
Q 003439 365 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP--VKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 442 (820)
Q Consensus 365 ~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 442 (820)
++++..-+. ..|+...+++.|+.-.+-..++.|+.+++... .|++.+|--...---++|...-|..+|....+
T Consensus 161 RqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie-- 235 (677)
T KOG1915|consen 161 RQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIE-- 235 (677)
T ss_pred HHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--
Confidence 999888776 57999999999999999999999999998754 67888888877777888999999998888766
Q ss_pred CCCCCcccHhhHHHHh----hccCChhHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHH--------hhC
Q 003439 443 EINPNQGTYVSILPAY----SHVGALRQGIKIHARVIKNCLCF-DVFVATCLVDMYGKCGRIDDAMSLF--------YQV 509 (820)
Q Consensus 443 g~~pd~~t~~~ll~a~----~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~--------~~~ 509 (820)
.-.|...-..+..++ .....++.|.-++..+++.-... ....|..+...--+-|+.....+.. +.+
T Consensus 236 -~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 236 -FLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred -HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 222333333344444 34567888999999888863322 1345555555545556544443332 222
Q ss_pred C---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--H---HHHH-HH-HH---HhcCCHHHHHHHHHHhH
Q 003439 510 P---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI--T---FVSL-LT-AC---SHSGLVSEGQRYFHMMQ 576 (820)
Q Consensus 510 ~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t---~~~l-l~-a~---~~~g~~~~a~~~~~~m~ 576 (820)
. +-|-.+|--.+..-...|+.+...++|++.+.. ++|-.. - |..| |+ +| ....+++.+.++++...
T Consensus 315 v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 315 VSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2 335556777888888889999999999999986 666321 1 2222 22 22 34688999999999887
Q ss_pred HhhCCCC-ChhHHHHHHHHHH----HcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 003439 577 EEFGIKP-HLKHYGCMVDLFG----RAGHLGMAHNFIQNM-PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 650 (820)
Q Consensus 577 ~~~g~~p-~~~~~~~li~~~~----~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 650 (820)
+ +.| ...++.-+--+|+ |+.++..|.+++... +.-|-.-++...|..-.+.++++....+|++.++..|.+
T Consensus 394 ~---lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~ 470 (677)
T KOG1915|consen 394 D---LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPEN 470 (677)
T ss_pred h---hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHh
Confidence 4 445 4567776666655 788999999999876 778999999999999999999999999999999999999
Q ss_pred cchHHhHHHHhhhcCCcchHHHHHHHHHhCCCCcCCceeEEEECCEEEEEEeCCCCCcccHHHHHHHHH
Q 003439 651 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRN 719 (820)
Q Consensus 651 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~ 719 (820)
-.++...+.+-...|++|.|..+|+.+.+......|..-| +.- --|-.....+.....+|..+.+
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw---kaY-IdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW---KAY-IDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH---HHh-hhhhhhcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887767777777 111 1122333334445555655543
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.37 E-value=1.9e-10 Score=125.00 Aligned_cols=275 Identities=9% Similarity=0.042 Sum_probs=193.5
Q ss_pred cCCHHHHHHHHhcCCCC--C-chHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHh--hHHHHhhccCChhHHH
Q 003439 394 LGIINSACAVFEGLPVK--D-VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV--SILPAYSHVGALRQGI 468 (820)
Q Consensus 394 ~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~--~ll~a~~~~~~~~~a~ 468 (820)
.|+++.|++.....++. + ...|-.......+.|++++|.+.|.++.+ ..|+..... .....+...|+.+.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~---~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE---LADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 47888888777765443 1 22232223444678888888888888866 566664443 2244667788888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc-----------ccchHHHHHHhcCChHHHHHHH
Q 003439 469 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV-----------PWNAIISCHGIHGQGDKALNFF 537 (820)
Q Consensus 469 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-----------~~~~li~~~~~~g~~~~A~~l~ 537 (820)
+.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+.... .|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8888887765 335677888888888889999888888887744332 1333333333444555666666
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 003439 538 RQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD 616 (820)
Q Consensus 538 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~ 616 (820)
+.+-+. .+.+......+..++...|+.++|.++++...+ ..|+.... ++......|+.+++.+.+++. +..|+
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 665442 334566778888899999999999999987764 34454221 223333458999999988877 44554
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 617 -ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 617 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
...+..+...|...+++++|++.|+++++.+|+ ...+..|+.++.+.|+.++|.+.+++...
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 446778888999999999999999999999995 45577899999999999999999987654
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=4.2e-09 Score=107.35 Aligned_cols=253 Identities=11% Similarity=0.127 Sum_probs=194.4
Q ss_pred HHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCC--CchhHHHHHHHHHHhcC
Q 003439 420 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC--FDVFVATCLVDMYGKCG 497 (820)
Q Consensus 420 ~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~--~~~~~~~~li~~y~~~g 497 (820)
.+|......+++++-...... .|..-+...-+....+.-...++++|+.+|+.+.+...- .|..+|+.++-.--.+.
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~-~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSS-VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 445555567777777777665 444333333333333455678899999999999887431 25667766653333222
Q ss_pred CHHH-HHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003439 498 RIDD-AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMM 575 (820)
Q Consensus 498 ~~~~-A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m 575 (820)
++.- |..++ .+.+--+.|...+..-|.-.++.++|+..|++.++ +.|.. ..|+.+..-|....+...|.+-++..
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 2222 33332 33344556677788888999999999999999999 56765 47888888999999999999999988
Q ss_pred HHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 003439 576 QEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 576 ~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
. .+.| |-..|-.|..+|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|++.|.+++...-.+..
T Consensus 391 v---di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 391 V---DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred H---hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 7 4556 5678999999999999999999999998 5666 5679999999999999999999999999998877889
Q ss_pred hHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 653 YYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 653 ~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
.++.|+++|-+.++.++|...+++-.+
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999887665
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.34 E-value=9.4e-10 Score=120.26 Aligned_cols=220 Identities=15% Similarity=0.039 Sum_probs=101.0
Q ss_pred HHHHHHcCChHHHHHHHHhhhhcCCCCCCc-ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhH-------HHHHH
Q 003439 419 ITGYAQNGLASEAIEVFQMMEECNEINPNQ-GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV-------ATCLV 490 (820)
Q Consensus 419 i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~-------~~~li 490 (820)
...+.+.|++++|.+.++.+.+ ..|+. ..+..+...+...|+++.+.+++..+.+.+..+.... +..++
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~---~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLE---MAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL 236 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 4444555555555555555554 23422 2344445555555555555555555555543222211 11111
Q ss_pred HHHHhcCCHHHHHHHHhhCCC---CCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH---HHHHHHHHhcCC
Q 003439 491 DMYGKCGRIDDAMSLFYQVPR---SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITF---VSLLTACSHSGL 564 (820)
Q Consensus 491 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~ 564 (820)
+.-......+...+.++..+. .+...+..+...+...|+.++|.+++++..+. .||.... ..........++
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~ 314 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPED 314 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCC
Confidence 111112223344444444442 35556666677777777777777777777763 4444321 111111222344
Q ss_pred HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 003439 565 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN--M-PVRPDASIWGALLGACRIHGNMELGAVASD 641 (820)
Q Consensus 565 ~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~--m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 641 (820)
.+.+.+.++...+...-.|+.....++..++.+.|++++|.+.|++ . ...||...+..+...+.+.|+.++|.++++
T Consensus 315 ~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 315 NEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555544443221222112333444444455555555555542 1 234444444444444444555555544444
Q ss_pred HH
Q 003439 642 RL 643 (820)
Q Consensus 642 ~~ 643 (820)
+.
T Consensus 395 ~~ 396 (409)
T TIGR00540 395 DS 396 (409)
T ss_pred HH
Confidence 43
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.32 E-value=6.3e-10 Score=120.93 Aligned_cols=284 Identities=12% Similarity=0.025 Sum_probs=153.8
Q ss_pred cCCHHHHHHHHhccCCC--CchH-HHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHH
Q 003439 292 FGMMRHALRVFDQMMER--DVVS-WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 368 (820)
Q Consensus 292 ~g~~~~A~~~f~~m~~~--d~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 368 (820)
.|+++.|++.+...++. +... |-.......+.|++++|.+.|.++.+. .|+...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~--------------------- 153 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQL--------------------- 153 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchH---------------------
Confidence 57777777666655442 1222 222223335666777777777666542 222111
Q ss_pred HHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCC
Q 003439 369 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV---KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 445 (820)
Q Consensus 369 ~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~ 445 (820)
.........+...|+.+.|...++.+.+ .+......+...|.+.|++++|.+++..+.+ .+..
T Consensus 154 -------------~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k-~~~~ 219 (398)
T PRK10747 154 -------------PVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAK-AHVG 219 (398)
T ss_pred -------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-cCCC
Confidence 1111224556666666666666665542 2455566667777777777777777777766 3322
Q ss_pred CCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHH
Q 003439 446 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIIS 522 (820)
Q Consensus 446 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 522 (820)
++. .+..+- ...|..++....+..+.+...++++.++ +.+......+..
T Consensus 220 ~~~-~~~~l~---------------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~ 271 (398)
T PRK10747 220 DEE-HRAMLE---------------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAE 271 (398)
T ss_pred CHH-HHHHHH---------------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHH
Confidence 111 000000 0011222222223334444555555554 334445556666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHH
Q 003439 523 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 602 (820)
Q Consensus 523 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 602 (820)
.+...|+.++|.+++++..+ ..||.... ++.+....++.+++.+..+...+++ +-|...+.++..++.+.|+++
T Consensus 272 ~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~ 345 (398)
T PRK10747 272 HLIECDDHDTAQQIILDGLK--RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQ 345 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHH
Confidence 66666666666666666666 23443211 2223334466677777666666431 223445666667777777777
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 003439 603 MAHNFIQNM-PVRPDASIWGALLGACRIHGNMELGAVASDRLFEV 646 (820)
Q Consensus 603 eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 646 (820)
+|.+.|+++ ...|+...+..|...+...|+.++|..++++.+.+
T Consensus 346 ~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 346 EASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 777777665 55677777667777777777777777777776654
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.31 E-value=2.7e-10 Score=124.55 Aligned_cols=218 Identities=7% Similarity=-0.089 Sum_probs=89.0
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHH
Q 003439 458 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKAL 534 (820)
Q Consensus 458 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 534 (820)
....|+.+.+.+++..+.+....+...+.-.....+...|+++.|.+.++.+. +.+...+..+...|.+.|++++|.
T Consensus 128 a~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~ 207 (409)
T TIGR00540 128 AQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALD 207 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 34445555555555444433211111222223444444555555555554444 223333444445555555555555
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHH---HHhcCCHHHHHHHHHHhHHhhC--CCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 003439 535 NFFRQMLDEGVRPDHITFVSLLTA---CSHSGLVSEGQRYFHMMQEEFG--IKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 609 (820)
Q Consensus 535 ~l~~~m~~~g~~p~~~t~~~ll~a---~~~~g~~~~a~~~~~~m~~~~g--~~p~~~~~~~li~~~~~~g~~~eA~~~~~ 609 (820)
+++.++.+.++.+.......-..+ ....+..+++.+.+..+.+... .+.+...+.+++..+...|+.++|.+.++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~ 287 (409)
T TIGR00540 208 DIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIF 287 (409)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 555555554322111110000011 1111222222223333322100 01144445555555555555555555555
Q ss_pred hC-CCCCCHHH---HHHHHHHHHhcCChhHHHHHHHHHhccCCCCc--chHHhHHHHhhhcCCcchHHHHHH
Q 003439 610 NM-PVRPDASI---WGALLGACRIHGNMELGAVASDRLFEVDSENV--GYYVLMSNIYANVGKWEGVDEVRS 675 (820)
Q Consensus 610 ~m-~~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~y~~~g~~~~A~~~~~ 675 (820)
+. ...||... +..........++.+.+++.+++.++..|+|+ .....|++++.+.|+|++|.+.++
T Consensus 288 ~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 288 DGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 44 22333221 11111111223444555555555555555555 444555555555555555555555
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.29 E-value=1.2e-11 Score=128.31 Aligned_cols=212 Identities=15% Similarity=0.137 Sum_probs=79.6
Q ss_pred CcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCC--CCCchHHHHHHHHHHHcCChHHHHHHHH
Q 003439 359 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP--VKDVISWNTLITGYAQNGLASEAIEVFQ 436 (820)
Q Consensus 359 ~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~ 436 (820)
++.+.+.+.+..+...+ +.++..+..++.. ...++.++|.+++...- .++...+..++..+.+.++++++.++++
T Consensus 58 ~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~ 134 (280)
T PF13429_consen 58 GDYDEAIEAYEKLLASD--KANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLE 134 (280)
T ss_dssp ---------------------------------------------------------------H-HHHTT-HHHHHHHHH
T ss_pred ccccccccccccccccc--ccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHH
Confidence 34444444444443333 2233444555555 46666666666665442 2345556666667777777777777777
Q ss_pred hhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCC
Q 003439 437 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSS 513 (820)
Q Consensus 437 ~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~ 513 (820)
.........++...|..+...+.+.|+.++|...++.+++... .|..+.+.++.++...|+.+++.++++... +.|
T Consensus 135 ~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~ 213 (280)
T PF13429_consen 135 KLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD 213 (280)
T ss_dssp HHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH
Confidence 7654222334444555555666667777777777777666542 245566666666766676666555554443 345
Q ss_pred ccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003439 514 SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQ 576 (820)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 576 (820)
...|..+..+|...|++++|+..|++.... .| |..+...+..++...|+.++|.++.....
T Consensus 214 ~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 214 PDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp CCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHhccccccccccccccccccc--cccccccccccccccccccccccccccccccc
Confidence 555666666666666777777776666663 34 44455566666666666666666665443
No 50
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=9.8e-10 Score=110.86 Aligned_cols=268 Identities=13% Similarity=0.145 Sum_probs=126.2
Q ss_pred HHHHhCCChhhHHHHHHHHHHcCCCCCcchHH--HHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcC
Q 003439 318 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV--SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG 395 (820)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~--~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g 395 (820)
..|.++|+++.|+++++-..+..-+.-...-+ +++.-+..-.++..|.+.-+..+... ..+....+.-.+.-...|
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d--ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID--RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc--ccCHHHhhcCCceeeecC
Confidence 44677888888888877776543222111111 22222222334445555544443332 111111111111222346
Q ss_pred CHHHHHHHHhcCCCCCchHHHHHH---HHHHHcCChHHHHHHHHhhhhcCCCC-CCcccHhhHHHHhhccCChhHHHHHH
Q 003439 396 IINSACAVFEGLPVKDVISWNTLI---TGYAQNGLASEAIEVFQMMEECNEIN-PNQGTYVSILPAYSHVGALRQGIKIH 471 (820)
Q Consensus 396 ~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~~g~~-pd~~t~~~ll~a~~~~~~~~~a~~i~ 471 (820)
++++|.+.+++....|...-.+|. ..+-..|+.++|++.|-++.. +- -+...+..+.+.|....+..+|.+++
T Consensus 505 d~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~---il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHA---ILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 666666666666555544333322 234445666666666665532 22 23334444455555555555665555
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003439 472 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 548 (820)
Q Consensus 472 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 548 (820)
...... ++.|+.+.+.|.+.|-+.|+-..|.+..-+-- +.++.+..-|..-|....-+++|+..|++..- ++|+
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~ 658 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPN 658 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCcc
Confidence 444332 33455566666666666666655555432211 33333333344444444555555555555444 4555
Q ss_pred hhHHHHHHHHH-HhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 003439 549 HITFVSLLTAC-SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 595 (820)
Q Consensus 549 ~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 595 (820)
..-|..++..| .+.|++..|.++++...+ .++.+......|+...
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~ 704 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIA 704 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHh
Confidence 55555444433 334555555555555443 2333444444444433
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.1e-08 Score=107.20 Aligned_cols=261 Identities=10% Similarity=0.023 Sum_probs=192.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 003439 413 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDM 492 (820)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 492 (820)
...-.-..-+...+++.+..++++...+..+ +....+..-|..+...|+-.+-..+-..+++. .+....+|-++.--
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~dp--fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKDP--FHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhCC--CCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 3333444455566777777777777766222 23333333444555666655554444444443 33456677778777
Q ss_pred HHhcCCHHHHHHHHhhCCCCC---ccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 003439 493 YGKCGRIDDAMSLFYQVPRSS---SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 569 (820)
Q Consensus 493 y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 569 (820)
|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-....+.-+.--|...++.+-|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHH
Confidence 888899999999998776333 345999999999999999999999888773 2223344555666788899999999
Q ss_pred HHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCChhHHHHH
Q 003439 570 RYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNMP--------VRP-DASIWGALLGACRIHGNMELGAVA 639 (820)
Q Consensus 570 ~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~--------~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 639 (820)
++|.+.. ++.| |+.+.+-+.-+....+.+.+|...|+..- ..+ -..+|+.|..+|++.+.+++|+..
T Consensus 401 ~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 401 KFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 9998776 6777 45667777777777889999999887651 111 234688899999999999999999
Q ss_pred HHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 640 SDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 640 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+++++.+.|.++.+|..++-+|...|+++.|...+.+....
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999987643
No 52
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=1.8e-11 Score=89.02 Aligned_cols=50 Identities=32% Similarity=0.594 Sum_probs=47.8
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhc
Q 003439 207 RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 256 (820)
Q Consensus 207 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 256 (820)
||+++||++|++|++.|++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 53
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.23 E-value=4.5e-09 Score=113.57 Aligned_cols=169 Identities=14% Similarity=0.175 Sum_probs=129.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hh-HHHHHHHHHHh
Q 003439 484 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HI-TFVSLLTACSH 561 (820)
Q Consensus 484 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~-t~~~ll~a~~~ 561 (820)
.+++.|..+|.+.|++++|...+ +.|++++++ ..|..+. .. -++.+...|..
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~------------------------e~Al~I~~~--~~~~~~~~v~~~l~~~~~~~~~ 337 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYC------------------------ERALEIYEK--LLGASHPEVAAQLSELAAILQS 337 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHH------------------------HHHHHHHHH--hhccChHHHHHHHHHHHHHHHH
Confidence 45666777899999999999887 577888887 3333333 32 46667778999
Q ss_pred cCCHHHHHHHHHHhHHhhC--CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHH
Q 003439 562 SGLVSEGQRYFHMMQEEFG--IKPH----LKHYGCMVDLFGRAGHLGMAHNFIQNM---------PVRPD-ASIWGALLG 625 (820)
Q Consensus 562 ~g~~~~a~~~~~~m~~~~g--~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m---------~~~p~-~~~~~~ll~ 625 (820)
.+.+++|..+++...+.+. +.++ ..+++.|..+|...|+++||.++++++ ...+. ...++.|..
T Consensus 338 ~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~ 417 (508)
T KOG1840|consen 338 MNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAE 417 (508)
T ss_pred hcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHH
Confidence 9999999999987766543 2222 367999999999999999999999877 11232 447788999
Q ss_pred HHHhcCChhHHHHHHHHHhc----cCCCC---cchHHhHHHHhhhcCCcchHHHHHHHHH
Q 003439 626 ACRIHGNMELGAVASDRLFE----VDSEN---VGYYVLMSNIYANVGKWEGVDEVRSLAR 678 (820)
Q Consensus 626 ~~~~~g~~~~a~~~~~~~~~----~~p~~---~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 678 (820)
+|.+.++.++|.++|++... ..|++ ..+|..|+-+|.+.|++++|.++-+...
T Consensus 418 ~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 418 AYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 99999999999999987654 34544 4467789999999999999999887775
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.22 E-value=1.3e-09 Score=109.70 Aligned_cols=198 Identities=13% Similarity=0.058 Sum_probs=162.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 003439 482 DVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 558 (820)
Q Consensus 482 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 558 (820)
....+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 35566778888889999999999998765 3345567888889999999999999999998853 2344577778888
Q ss_pred HHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 003439 559 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELG 636 (820)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 636 (820)
+...|++++|.+.++..............+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998754222234456777889999999999999999887 3344 456888899999999999999
Q ss_pred HHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 637 AVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 637 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
...++++++..|+++..+..++.++...|++++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999988888888888999999999999999988877543
No 55
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.18 E-value=4.2e-06 Score=89.15 Aligned_cols=276 Identities=10% Similarity=0.119 Sum_probs=165.2
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhcCCCCCc-------hHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhH
Q 003439 382 IIGNAVVDMYAKLGIINSACAVFEGLPVKDV-------ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 454 (820)
Q Consensus 382 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~l 454 (820)
..+..+...|-..|+++.|+.+|+....-+- ..|-.-...=.+..+++.|+++.+.... .|....
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~----vP~~~~---- 459 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH----VPTNPE---- 459 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc----CCCchh----
Confidence 4677889999999999999999998765432 2344444555567778888888776543 232211
Q ss_pred HHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHH---HHHHhcCChH
Q 003439 455 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII---SCHGIHGQGD 531 (820)
Q Consensus 455 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~ 531 (820)
+ .+.+.+..-+++ + ..+..+|+..++.--..|-++....+++++..--+.|=..++ .-+-.|.-++
T Consensus 460 ~-~~yd~~~pvQ~r-l---------hrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfe 528 (835)
T KOG2047|consen 460 L-EYYDNSEPVQAR-L---------HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFE 528 (835)
T ss_pred h-hhhcCCCcHHHH-H---------HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHH
Confidence 1 112222211111 1 124556677777777777777777777777644333322221 1234566677
Q ss_pred HHHHHHHHHHHcCCCCChh-HHHHHHHHHHh---cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH----HcCCHHH
Q 003439 532 KALNFFRQMLDEGVRPDHI-TFVSLLTACSH---SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG----RAGHLGM 603 (820)
Q Consensus 532 ~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~---~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~----~~g~~~e 603 (820)
++.++|++-+..=-.|+.. .|+..|.-+.+ .-.++.|..+|++..+ |.+|.- .-++--+|+ +-|....
T Consensus 529 esFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~--aKtiyLlYA~lEEe~GLar~ 604 (835)
T KOG2047|consen 529 ESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEH--AKTIYLLYAKLEEEHGLARH 604 (835)
T ss_pred HHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHH--HHHHHHHHHHHHHHhhHHHH
Confidence 7877777666543344543 55555544332 3367888888888774 554432 222222333 4577777
Q ss_pred HHHHHHhCC--CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchH--HhHHHHhhhcCCcchHHHHHHHH
Q 003439 604 AHNFIQNMP--VRPD--ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY--VLMSNIYANVGKWEGVDEVRSLA 677 (820)
Q Consensus 604 A~~~~~~m~--~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~--~~l~~~y~~~g~~~~A~~~~~~m 677 (820)
|++++++.. .++. ...||..|.--...=-+...+.+|+++++.-|++..-- ...+++-.+.|..+.|+.++.--
T Consensus 605 amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~ 684 (835)
T KOG2047|consen 605 AMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHG 684 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 888888772 3332 23677766543333234556778888888877654432 34678888889999998888776
Q ss_pred HhC
Q 003439 678 RDR 680 (820)
Q Consensus 678 ~~~ 680 (820)
.+.
T Consensus 685 sq~ 687 (835)
T KOG2047|consen 685 SQI 687 (835)
T ss_pred hhc
Confidence 554
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.17 E-value=2e-08 Score=98.01 Aligned_cols=305 Identities=14% Similarity=0.151 Sum_probs=147.3
Q ss_pred CCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHH
Q 003439 323 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 402 (820)
Q Consensus 323 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~ 402 (820)
+.++++|.++|-+|.+. |..|| .+.-+|.+.|.+.|.+|.|.+
T Consensus 48 s~Q~dKAvdlF~e~l~~----d~~t~---------------------------------e~~ltLGnLfRsRGEvDRAIR 90 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE----DPETF---------------------------------EAHLTLGNLFRSRGEVDRAIR 90 (389)
T ss_pred hcCcchHHHHHHHHHhc----Cchhh---------------------------------HHHHHHHHHHHhcchHHHHHH
Confidence 57889999999999763 22222 222344444555555555555
Q ss_pred HHhcCCCCCch-------HHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHH
Q 003439 403 VFEGLPVKDVI-------SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 475 (820)
Q Consensus 403 ~f~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 475 (820)
+-+.+.++... ..-.|..-|...|-++.|..+|..+.+ .+. --......++..|....++++|.++-..+.
T Consensus 91 iHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~d-e~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~ 168 (389)
T COG2956 91 IHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVD-EGE-FAEGALQQLLNIYQATREWEKAIDVAERLV 168 (389)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhc-chh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 54444322111 223345556667777777777777655 221 111233445556666666666666666666
Q ss_pred HhCCCCch----hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-
Q 003439 476 KNCLCFDV----FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI- 550 (820)
Q Consensus 476 ~~g~~~~~----~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~- 550 (820)
+.+-.+.. ..|.-|...+... .+.++|..++.+..+. .|+.+
T Consensus 169 k~~~q~~~~eIAqfyCELAq~~~~~-------------------------------~~~d~A~~~l~kAlqa--~~~cvR 215 (389)
T COG2956 169 KLGGQTYRVEIAQFYCELAQQALAS-------------------------------SDVDRARELLKKALQA--DKKCVR 215 (389)
T ss_pred HcCCccchhHHHHHHHHHHHHHhhh-------------------------------hhHHHHHHHHHHHHhh--Ccccee
Confidence 65433321 1223333333333 4444555555555442 33332
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 003439 551 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGALLGACRI 629 (820)
Q Consensus 551 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~ 629 (820)
.=..+.......|+++.|.+.++.+.+. +..--.++...|..+|...|+.++...++.++ ...+....-..+...-..
T Consensus 216 Asi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~ 294 (389)
T COG2956 216 ASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIEL 294 (389)
T ss_pred hhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHH
Confidence 1122333444555555555555544433 22222334444555555555555555555443 222232222233332222
Q ss_pred cCChhHHHHHHHHHhccCCCCcchHHhHHHHh--hhcCCcchHHHHHHHHHhCCCCcCCceeEEEECCEEEEE
Q 003439 630 HGNMELGAVASDRLFEVDSENVGYYVLMSNIY--ANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIF 700 (820)
Q Consensus 630 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y--~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f 700 (820)
+.-.+.|.....+-+.-.|.--+.|..+---. +.-|++.+-....+.|....++..|.+.--.-+-..|.|
T Consensus 295 ~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 295 QEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred hhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence 33334444444444445553333333222111 233557777777888887777776655444444444443
No 57
>PF13041 PPR_2: PPR repeat family
Probab=99.16 E-value=5.7e-11 Score=86.33 Aligned_cols=50 Identities=30% Similarity=0.475 Sum_probs=48.1
Q ss_pred CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 003439 308 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 357 (820)
Q Consensus 308 ~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 357 (820)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999864
No 58
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=1.6e-07 Score=96.59 Aligned_cols=217 Identities=10% Similarity=0.061 Sum_probs=170.7
Q ss_pred HHHcCChHHHHHHHHhhhhcCCCCCCccc-HhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 003439 422 YAQNGLASEAIEVFQMMEECNEINPNQGT-YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 500 (820)
Q Consensus 422 ~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 500 (820)
+.-.|+...|.+.|+.... +.|-... |.-+-.+|....+.++..+.|..+.+.+.. ++.+|..-..++.-.++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~---l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIK---LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhcCCchhhhhhHHHHHh---cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHH
Confidence 4456889999999999988 4443333 767777899999999999999999887643 5667777788888889999
Q ss_pred HHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 003439 501 DAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE 577 (820)
Q Consensus 501 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 577 (820)
+|..=|++.. +.++.+|-.+..+.-+.++++++...|++.++. ++--...|+.....+...+++++|.+.|+...+
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 9999999877 445666777777777888999999999999985 333456899999999999999999999998873
Q ss_pred hhCCCCC---------hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 003439 578 EFGIKPH---------LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEV 646 (820)
Q Consensus 578 ~~g~~p~---------~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 646 (820)
+.|+ +.+--+++-+-. .+++.+|.+++++. .+.|. ...+-+|...-.+.|+.++|+++|++...+
T Consensus 491 ---LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 491 ---LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred ---hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4454 112222222222 38999999999987 66665 458999999999999999999999988765
Q ss_pred C
Q 003439 647 D 647 (820)
Q Consensus 647 ~ 647 (820)
-
T Consensus 567 A 567 (606)
T KOG0547|consen 567 A 567 (606)
T ss_pred H
Confidence 4
No 59
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=7.5e-06 Score=91.15 Aligned_cols=468 Identities=14% Similarity=0.175 Sum_probs=271.0
Q ss_pred HHHHHHHhhcCCChhHHHHHhccCCC-CCcccHHHH-----HHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhh
Q 003439 181 AASLLHMYCRFGLANVARKLFDDMPV-RDSGSWNAM-----ISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 254 (820)
Q Consensus 181 ~~~li~~y~~~g~~~~A~~~f~~m~~-~~~~~~~~l-----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 254 (820)
+..+.+.+.+.|-...|++.+.++.. +-++..+.+ +-.|.-.-.++++++.++.|...+++.|..+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 56667788899999999999887752 111222222 234556667899999999999998888888777776666
Q ss_pred hcCCChHHHHHHHHHHHH-----------hCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCC----------------
Q 003439 255 ARSDNILSGLLIHLYIVK-----------HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME---------------- 307 (820)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~-----------~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---------------- 307 (820)
...-..+.-.++|+.... .++..|+.+.-..|.+.++.|++.+.+++-++-.-
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 555444555555544322 12455666777789999999999999988765411
Q ss_pred ---------------CCchHH------HHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcch-------------HHHHHH
Q 003439 308 ---------------RDVVSW------NSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLT-------------LVSLTS 353 (820)
Q Consensus 308 ---------------~d~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t-------------~~~ll~ 353 (820)
+|.+.| .-.|..|++.=++...-.+.-.+.+. .-+... ...+..
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~--dC~E~~ik~Li~~v~gq~~~deLv~ 846 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDV--DCSEDFIKNLILSVRGQFPVDELVE 846 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcC--CCcHHHHHHHHHHHhccCChHHHHH
Confidence 122221 12345555543333322222222111 001111 111222
Q ss_pred HHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcC--------------------------------------
Q 003439 354 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG-------------------------------------- 395 (820)
Q Consensus 354 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g-------------------------------------- 395 (820)
-+.+.+.+..-...++..+..| ..|..++|+|...|....
T Consensus 847 EvEkRNRLklLlp~LE~~i~eG--~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGq 924 (1666)
T KOG0985|consen 847 EVEKRNRLKLLLPWLESLIQEG--SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQ 924 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHHhcc--CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccC
Confidence 2233333333333444444444 345555555555554322
Q ss_pred --------------------------CHHHHHHHHhcC----------------C-CCCchHHHHHHHHHHHcCChHHHH
Q 003439 396 --------------------------IINSACAVFEGL----------------P-VKDVISWNTLITGYAQNGLASEAI 432 (820)
Q Consensus 396 --------------------------~~~~A~~~f~~~----------------~-~~~~~~~~~li~~~~~~g~~~~A~ 432 (820)
+.+--.+++.+- + ..|+..-+..+.++...+-+.+-+
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLI 1004 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELI 1004 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHH
Confidence 221111111100 0 113333445566677777777777
Q ss_pred HHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhC-----------------------CCCchhHHHHH
Q 003439 433 EVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC-----------------------LCFDVFVATCL 489 (820)
Q Consensus 433 ~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-----------------------~~~~~~~~~~l 489 (820)
++++++.-....-.....+..++-.-+-..+.....++.+++-... +..+....+.|
T Consensus 1005 ELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VL 1084 (1666)
T KOG0985|consen 1005 ELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVL 1084 (1666)
T ss_pred HHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHH
Confidence 7777765311111111111112111111122222222222221111 11122222222
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 003439 490 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 569 (820)
Q Consensus 490 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 569 (820)
|+ ..+.++.|.+.-++..+ ...|+.+..+-.+.|...+|++-|-+ .-|...|..++.++++.|.|++-.
T Consensus 1085 ie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv 1153 (1666)
T KOG0985|consen 1085 IE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLV 1153 (1666)
T ss_pred HH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHH
Confidence 21 22344444444444333 33599999999999999999987733 235568999999999999999999
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003439 570 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 570 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 649 (820)
+++....++ .-+|..+ +.|+-+|++.+++.|-++++. -||..-......-|...|.++.|.-+|.
T Consensus 1154 ~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~-------- 1218 (1666)
T KOG0985|consen 1154 KYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS-------- 1218 (1666)
T ss_pred HHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------
Confidence 999655543 5666544 679999999999999988873 4787778889999999999999999887
Q ss_pred CcchHHhHHHHhhhcCCcchHHHHHHHHH
Q 003439 650 NVGYYVLMSNIYANVGKWEGVDEVRSLAR 678 (820)
Q Consensus 650 ~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 678 (820)
+.+.|..|+..+...|.+..|...-+++.
T Consensus 1219 ~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1219 NVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 56678888888888888888776555543
No 60
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.10 E-value=7.7e-08 Score=94.03 Aligned_cols=286 Identities=14% Similarity=0.132 Sum_probs=162.9
Q ss_pred CCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCc---cHHHHHHHHHHHHccCCHHHH
Q 003439 222 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEF---NLFVSNNLINMYAKFGMMRHA 298 (820)
Q Consensus 222 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~~A 298 (820)
+.+.++|+++|-+|.+.. +-+..+-.++-+.+.+.|..+.|..+|..+.++.--+ -....-.|..-|.+.|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467888999999987631 1122344456677788888888888888887653111 133455667778888888888
Q ss_pred HHHHhccCCCCc---hHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhC
Q 003439 299 LRVFDQMMERDV---VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 375 (820)
Q Consensus 299 ~~~f~~m~~~d~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 375 (820)
+.+|..+.+.+. .+...|+..|-+..+|++|++.-+++.+.|-++..+-.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI--------------------------- 179 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI--------------------------- 179 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH---------------------------
Confidence 888888876433 34556788888888888888888887765544332211
Q ss_pred CcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhH-
Q 003439 376 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI- 454 (820)
Q Consensus 376 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~l- 454 (820)
.. .|.-+...+....+.+.|..++.+..+ ..|+.+--+.+
T Consensus 180 ------------Aq------------------------fyCELAq~~~~~~~~d~A~~~l~kAlq---a~~~cvRAsi~l 220 (389)
T COG2956 180 ------------AQ------------------------FYCELAQQALASSDVDRARELLKKALQ---ADKKCVRASIIL 220 (389)
T ss_pred ------------HH------------------------HHHHHHHHHhhhhhHHHHHHHHHHHHh---hCccceehhhhh
Confidence 11 122233333334455556666655544 33443333322
Q ss_pred HHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCccccchHHHHHHhcCChHH
Q 003439 455 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP--RSSSVPWNAIISCHGIHGQGDK 532 (820)
Q Consensus 455 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~ 532 (820)
-+.....|+++.|.+.++.+.+.+..--..+...|..+|...|+.++....+.++. .++...-+.+...-....-.+.
T Consensus 221 G~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~ 300 (389)
T COG2956 221 GRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDA 300 (389)
T ss_pred hHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHH
Confidence 23345555666666666665555544445555666666666666666666655544 2233333333333333333444
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHh---cCCHHHHHHHHHHhH
Q 003439 533 ALNFFRQMLDEGVRPDHITFVSLLTACSH---SGLVSEGQRYFHMMQ 576 (820)
Q Consensus 533 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~---~g~~~~a~~~~~~m~ 576 (820)
|...+.+-+. -+|+...|..++..-.. .|...+-...++.|.
T Consensus 301 Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 301 AQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 4444444444 26777766666664432 233444455555554
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=4.6e-07 Score=95.25 Aligned_cols=493 Identities=12% Similarity=0.053 Sum_probs=233.2
Q ss_pred cHHHHHHhhc---ChHHHHHHHHHHHHhCCCCChhhhHHHHHHHHccCChHHHHHHhc--ccCCCCcchHHHHHHHHHhC
Q 003439 49 DFDDLFQSCT---KLHHVKRLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFD--HISYRNVYTWNSMISVYVRC 123 (820)
Q Consensus 49 ~~~~ll~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~--~~~~~~~~~~~~li~~~~~~ 123 (820)
-+..+++-|. ....+.-+-+.+...+ .|+..---+..+|.-.|.+..|..+.. .+.+.|..+.......+.+.
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~l 95 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKL 95 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 3445555443 3333444444444334 455555557777777788888877765 45677888888888999999
Q ss_pred CCchHHHHHHHHHhhhCCCCCCccccHHHHHhhcCCcc-hHHHHHHHHHhCCCCcHHHHHHHHHHhhcCCChhHHHHHhc
Q 003439 124 GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD-GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFD 202 (820)
Q Consensus 124 g~~~~A~~l~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 202 (820)
.++++|+.++.. - .+.-+.+.|-..=.++.-..+ +...+..-.+.++ +-.--..|......++|+..|.
T Consensus 96 k~~~~al~vl~~-~---~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essi------c~lRgk~y~al~n~~~ar~~Y~ 165 (611)
T KOG1173|consen 96 KEWDQALLVLGR-G---HVETNPFSYYEKDAANTLELNSAGEDLMINLESSI------CYLRGKVYVALDNREEARDKYK 165 (611)
T ss_pred HHHHHHHHHhcc-c---chhhcchhhcchhhhceeccCcccccccccchhce------eeeeeehhhhhccHHHHHHHHH
Confidence 999999887763 0 111111111100000000000 1100000011110 0000122333455677777776
Q ss_pred cCCCCCcccHHHHHHHHHhCC-ChhHHHHHHHHHHHC-CCCCChHHHHhHHHhh-hcCCChHHHHHHHHHHHHhCCCccH
Q 003439 203 DMPVRDSGSWNAMISGYCQSG-NAVEALDILDEMRLE-GVSMDPITVASILPVC-ARSDNILSGLLIHLYIVKHGLEFNL 279 (820)
Q Consensus 203 ~m~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~-~~~~~~~~a~~~~~~~~~~g~~~~~ 279 (820)
+....|+..+.++...-...= -..+-.++|+...-. -.+-+....-.+.... ++..+.+.. ..-....-.|...++
T Consensus 166 ~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~-~r~~~~sl~~l~~~~ 244 (611)
T KOG1173|consen 166 EALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESL-TRNEDESLIGLAENL 244 (611)
T ss_pred HHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccccc-ccCchhhhhhhhhcH
Confidence 666666666555443221111 011222222211000 0001111111111111 000000000 000000001112223
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC
Q 003439 280 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 359 (820)
Q Consensus 280 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~ 359 (820)
.+..... .-+...+++.+.+++++...+. .++....+..=|..+...|
T Consensus 245 dll~~~a-------------------------------d~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~ 292 (611)
T KOG1173|consen 245 DLLAEKA-------------------------------DRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELG 292 (611)
T ss_pred HHHHHHH-------------------------------HHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhc
Confidence 3333333 3344445555555555554433 1222222222233333444
Q ss_pred cchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCC---CchHHHHHHHHHHHcCChHHHHHHHH
Q 003439 360 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK---DVISWNTLITGYAQNGLASEAIEVFQ 436 (820)
Q Consensus 360 ~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~ 436 (820)
+...-..+-..+++. .|.....|-++.-.|.-.|..++|++.|.....- =...|-.....|+-.|..++|+..+.
T Consensus 293 ~~n~Lf~lsh~LV~~--yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~ 370 (611)
T KOG1173|consen 293 KSNKLFLLSHKLVDL--YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYF 370 (611)
T ss_pred ccchHHHHHHHHHHh--CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHH
Confidence 433333333333333 5777788888888888888889999888765433 34578888888888898898888877
Q ss_pred hhhhcCCCCCCcc-cHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc
Q 003439 437 MMEECNEINPNQG-TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV 515 (820)
Q Consensus 437 ~m~~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~ 515 (820)
..-+ .-|... -+.-+---|.+.++++.|.+++..+.... +.|+.+.+-
T Consensus 371 tAar---l~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~E--------------------------- 419 (611)
T KOG1173|consen 371 TAAR---LMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHE--------------------------- 419 (611)
T ss_pred HHHH---hccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhh---------------------------
Confidence 6654 222211 11112222444555555555555544432 223444444
Q ss_pred ccchHHHHHHhcCChHHHHHHHHHHHHc--CC---CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHH
Q 003439 516 PWNAIISCHGIHGQGDKALNFFRQMLDE--GV---RP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 589 (820)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~---~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~ 589 (820)
+.....+.+.+.+|..+|+..++. .+ .+ -..+++.|..+|.+.+.+++|+..++.... -.+.+..++.
T Consensus 420 ----lgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~a 493 (611)
T KOG1173|consen 420 ----LGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHA 493 (611)
T ss_pred ----hhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHH
Confidence 444444445555555555554421 00 11 233566666666666666666666666553 2233455666
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 003439 590 CMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGALLG 625 (820)
Q Consensus 590 ~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~ 625 (820)
++.-.|...|+++.|.+.|.+. .++||..+-..++.
T Consensus 494 sig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 494 SIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 6666666666666666666554 45555554444443
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.5e-07 Score=93.23 Aligned_cols=305 Identities=8% Similarity=-0.009 Sum_probs=196.9
Q ss_pred CCCcchHHHHHHHHHh--cCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHH-
Q 003439 342 QPDLLTLVSLTSIVAQ--LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL- 418 (820)
Q Consensus 342 ~pd~~t~~~ll~a~~~--~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l- 418 (820)
.|...+...-+.+++. .++-..+.+.+..+.+...++.++....++.+.|...|+.++|...|++...-|..+...|
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 3444444445555443 3444455555555555554778888888888999999999999998887665554443332
Q ss_pred --HHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 003439 419 --ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 496 (820)
Q Consensus 419 --i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 496 (820)
.--+.+.|+++....+...+.. . .+-....+..-.......++++.|..+-+..++.... ++..+-.-..++...
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~-~-~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFA-K-VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHh-h-hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhc
Confidence 2334567888877777777654 1 1111222222223334556777777777766664322 233333334556677
Q ss_pred CCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH-HHHH-hcCCHHHHHHH
Q 003439 497 GRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL-TACS-HSGLVSEGQRY 571 (820)
Q Consensus 497 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~ 571 (820)
|+.++|.-.|+... +-+..+|.-|+.+|...|.+.+|.-+-+..... +..+..+...+. ..|. ....-++|.++
T Consensus 348 ~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 88888888887655 457778888888888888888888877766653 333444554442 2332 22334677777
Q ss_pred HHHhHHhhCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003439 572 FHMMQEEFGIKPHL-KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 572 ~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 649 (820)
+++-. .+.|+- ...+.+..++.+.|+.+++..++++. ...||....+.|....+..+.+++|...|..++.++|+
T Consensus 427 ~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 427 AEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 76554 455652 45566777788888888888888876 56678888888888888888888888888888888887
Q ss_pred Ccch
Q 003439 650 NVGY 653 (820)
Q Consensus 650 ~~~~ 653 (820)
+..+
T Consensus 504 ~~~s 507 (564)
T KOG1174|consen 504 SKRT 507 (564)
T ss_pred chHH
Confidence 6543
No 63
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.10 E-value=1.3e-07 Score=95.48 Aligned_cols=279 Identities=12% Similarity=0.070 Sum_probs=166.1
Q ss_pred CCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHH
Q 003439 323 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 402 (820)
Q Consensus 323 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~ 402 (820)
.|++.+|.++..+-.+.+-.| ...|..-..+.-..|+.+.+-.....+.+.. -.++..+.-+........|+.+.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCchhHHH
Confidence 466666666666655544333 2234444455556666666666666665553 34555666666777777777777776
Q ss_pred HHhc---CCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCc-------ccHhhHHHHhhccCChhHHHHHHH
Q 003439 403 VFEG---LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ-------GTYVSILPAYSHVGALRQGIKIHA 472 (820)
Q Consensus 403 ~f~~---~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-------~t~~~ll~a~~~~~~~~~a~~i~~ 472 (820)
-.++ |..++..........|.+.|++.+...++.+|.+ .|+--|+ .++..+++-+...+..+.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~k-a~~l~~~e~~~le~~a~~glL~q~~~~~~~~g------ 247 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRK-AGLLSDEEAARLEQQAWEGLLQQARDDNGSEG------ 247 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHH-ccCCChHHHHHHHHHHHHHHHHHHhccccchH------
Confidence 6554 3355677777888888888888888888888887 6654443 233344443333333333
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 003439 473 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 549 (820)
Q Consensus 473 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 549 (820)
-...++..+ +.++..-.+++.-+.+.|+.++|.++..+..+.+..|+-
T Consensus 248 -----------------------------L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L 298 (400)
T COG3071 248 -----------------------------LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL 298 (400)
T ss_pred -----------------------------HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH
Confidence 333333333 223333344444455555555666666666655555551
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 003439 550 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGALLGACR 628 (820)
Q Consensus 550 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~ 628 (820)
..+-.+.+-++...-++..+.-...++..| ..+.+|..+|.+.+.+.+|.+.|+.. +..|+...|+-+..++.
T Consensus 299 ----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~ 372 (400)
T COG3071 299 ----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALD 372 (400)
T ss_pred ----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 122234455555555555555555545555 45666777777777777777777755 56677777777777777
Q ss_pred hcCChhHHHHHHHHHhc
Q 003439 629 IHGNMELGAVASDRLFE 645 (820)
Q Consensus 629 ~~g~~~~a~~~~~~~~~ 645 (820)
+.|+.++|.+..++.+-
T Consensus 373 ~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 373 QLGEPEEAEQVRREALL 389 (400)
T ss_pred HcCChHHHHHHHHHHHH
Confidence 77777777777776653
No 64
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=6.7e-07 Score=94.45 Aligned_cols=431 Identities=13% Similarity=0.110 Sum_probs=243.4
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHH--HHHHHH--cc
Q 003439 217 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNN--LINMYA--KF 292 (820)
Q Consensus 217 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~y~--~~ 292 (820)
+-+..+|++++|+....+....+ +-|...+..-+-+..+.+.++.|..+... .+. ..+++. +=.+|| +.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHHHc
Confidence 44455566666666666655443 22333444445555555666655533221 111 111111 233443 67
Q ss_pred CCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCC-cchHHHHHHHHHhcCcchhhhhHHHHH
Q 003439 293 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD-LLTLVSLTSIVAQLNDCRNSRSVHGFI 371 (820)
Q Consensus 293 g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~ 371 (820)
+..|+|...++.....|..+...-...+.+.|++++|+++|+.+.+.+..-- ...-..++.+-+... ...
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~---------~~~ 163 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ---------VQL 163 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh---------HHH
Confidence 8888888888866555655666666778888999999999999876654322 112222222221111 101
Q ss_pred HHhCCcCc--chhHHhHHHHHHHhcCCHHHHHHHHhcC--------CCCCc-----hH-----HHHHHHHHHHcCChHHH
Q 003439 372 MRRGWFME--DVIIGNAVVDMYAKLGIINSACAVFEGL--------PVKDV-----IS-----WNTLITGYAQNGLASEA 431 (820)
Q Consensus 372 ~~~g~~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~~--------~~~~~-----~~-----~~~li~~~~~~g~~~~A 431 (820)
.+.-...+ +-..+-.....+...|++.+|+++++.. .+.|. .. ---|.-.+...|+.++|
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 11110111 1112222334566788999999888765 21111 11 11233456678999999
Q ss_pred HHHHHhhhhcCCCCCCcccHhhH---HHHhhccCChhH--HHHH------------HHHHHHhCCCCchhHHHHHHHHHH
Q 003439 432 IEVFQMMEECNEINPNQGTYVSI---LPAYSHVGALRQ--GIKI------------HARVIKNCLCFDVFVATCLVDMYG 494 (820)
Q Consensus 432 ~~l~~~m~~~~g~~pd~~t~~~l---l~a~~~~~~~~~--a~~i------------~~~~~~~g~~~~~~~~~~li~~y~ 494 (820)
..++....+ . ..+|....... |.+...-.++-. .... ...+.+ .......--+.++.+|.
T Consensus 244 ~~iy~~~i~-~-~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~-~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 244 SSIYVDIIK-R-NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSK-KQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHH-h-cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 999998876 2 34454222111 112222222211 1111 111111 11112233355666665
Q ss_pred hcCCHHHHHHHHhhCCCCC-ccccchHHHHH--HhcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCCHHHHH
Q 003439 495 KCGRIDDAMSLFYQVPRSS-SVPWNAIISCH--GIHGQGDKALNFFRQMLDEGVRPDH--ITFVSLLTACSHSGLVSEGQ 569 (820)
Q Consensus 495 ~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~ 569 (820)
+..+.+.++....+... ...+.+++... .+...+.+|.+++...-+. .|.. +.....+......|+++.|.
T Consensus 321 --nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 321 --NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred --hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 45677777777776333 23344444433 2233577888888877664 4544 34455566678899999999
Q ss_pred HHHH--------HhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCC
Q 003439 570 RYFH--------MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM--------PVRPD-ASIWGALLGACRIHGN 632 (820)
Q Consensus 570 ~~~~--------~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g~ 632 (820)
+++. .+. .+.-.+.+..+++.+|.+.++-+-|.+++.+. ..++. ..+|.-+...-.++|+
T Consensus 397 ~il~~~~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 397 EILSLFLESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHhhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 9998 443 23334456788899999988777666666544 22222 2244455555568899
Q ss_pred hhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHH
Q 003439 633 MELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR 674 (820)
Q Consensus 633 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 674 (820)
-++|...++++++..|++....+.++-+|++.. .+.|..+-
T Consensus 474 ~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~ 514 (652)
T KOG2376|consen 474 EEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLS 514 (652)
T ss_pred hHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHh
Confidence 999999999999999999999999999888763 45555443
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.09 E-value=1.2e-08 Score=116.02 Aligned_cols=243 Identities=11% Similarity=0.016 Sum_probs=176.5
Q ss_pred ChHHHHHHHHhhhhcCCCCCCccc-HhhHHHHhh---------ccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 003439 427 LASEAIEVFQMMEECNEINPNQGT-YVSILPAYS---------HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 496 (820)
Q Consensus 427 ~~~~A~~l~~~m~~~~g~~pd~~t-~~~ll~a~~---------~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 496 (820)
..++|+++|++..+ ..|+... +..+..++. ..++.++|...++.+++... .+...+..+..++...
T Consensus 276 ~~~~A~~~~~~Al~---ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 276 SLQQALKLLTQCVN---MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHc
Confidence 45788888888876 6676543 222222222 23457888999988888653 3667788888889999
Q ss_pred CCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHH
Q 003439 497 GRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYF 572 (820)
Q Consensus 497 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~ 572 (820)
|++++|...|++.. +.+...|..+...+...|++++|+..+++.++ +.|+.. .+..++..+...|++++|.+.+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 99999999999876 33455688888999999999999999999999 567653 3334455567789999999999
Q ss_pred HHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003439 573 HMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDAS-IWGALLGACRIHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 573 ~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 649 (820)
+++... ..| +...+..+..+|...|+.++|.+.++++ +..|+.. .++.+...+...| +.|...++++++..-.
T Consensus 430 ~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 887753 234 3455777888999999999999999987 4455544 5666666777777 4788878877664332
Q ss_pred CcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 650 NVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 650 ~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.+.....+..+|+-.|+-+.+..+ +++.+.
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 333333377788888998888777 666654
No 66
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.07 E-value=3e-07 Score=98.36 Aligned_cols=462 Identities=16% Similarity=0.154 Sum_probs=245.5
Q ss_pred ccCChHHHHHHhcccCC-CCcc-hHHHHHHHHHhCCCchHHHHHHHHHhhhCCCCCCccccHHHHHhhcCCcchHHHHHH
Q 003439 91 NLGDLSFSRHTFDHISY-RNVY-TWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCS 168 (820)
Q Consensus 91 ~~g~~~~A~~~f~~~~~-~~~~-~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~ 168 (820)
..|+++.|...++.... |+.. .|-.+...-...|+.--|.+.|.. +- -.+ .++.+|+.
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaa-i~----------------dva---k~r~lhd~ 515 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAA-IG----------------DVA---KARFLHDI 515 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHH-HH----------------HHH---HHHHHHHH
Confidence 45778888887776542 5543 466666666667777666666654 11 000 03334433
Q ss_pred HH-------HhC-CCCcHHHHHHHHHHhhcCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 003439 169 VL-------KLG-FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV 240 (820)
Q Consensus 169 ~~-------~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 240 (820)
.. +.| -..|-+-..+++.++.+ ++.+|..+|-+-. .-...|..|....++++|+.+-+.. |.
T Consensus 516 ~eiadeas~~~ggdgt~fykvra~lail~k--kfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~lae~~---~~ 585 (1636)
T KOG3616|consen 516 LEIADEASIEIGGDGTDFYKVRAMLAILEK--KFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIALAEAK---GH 585 (1636)
T ss_pred HHHHHHHhHhhCCCCchHHHHHHHHHHHHh--hhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHHHHhc---CC
Confidence 21 222 23344444555555543 5778888874321 1234566666777777777764332 22
Q ss_pred CCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhc--cCCCCchHHHHHHH
Q 003439 241 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQ--MMERDVVSWNSIIA 318 (820)
Q Consensus 241 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~--m~~~d~~~~~~li~ 318 (820)
+.-...-.+.++++...|+-+.|-++- .+.--.-+-|..|.+.|....|.+.-.. ....|......+..
T Consensus 586 p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~ 656 (1636)
T KOG3616|consen 586 PALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAA 656 (1636)
T ss_pred hHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHH
Confidence 211122233445555555554443321 1111123457788888888777665432 12234444555555
Q ss_pred HHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhH-HhHHHHHHHhcCCH
Q 003439 319 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII-GNAVVDMYAKLGII 397 (820)
Q Consensus 319 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~-~~~li~~y~~~g~~ 397 (820)
++.+..-+++|-++|+++.. +...+..+.+-..+..|.++-... +|..++. -.+-..-+...|++
T Consensus 657 alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfa-----fp~evv~lee~wg~hl~~~~q~ 722 (1636)
T KOG3616|consen 657 ALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA-----FPEEVVKLEEAWGDHLEQIGQL 722 (1636)
T ss_pred HHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh-----CcHHHhhHHHHHhHHHHHHHhH
Confidence 66666666666666666532 112222232323333444433322 2322221 12233444566777
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHh
Q 003439 398 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN 477 (820)
Q Consensus 398 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 477 (820)
+.|...|-+.. ..-.-|.+-.....+.+|+.+++.++. +. .-..-|..+..-|+..|+++.|.++|.+.
T Consensus 723 daainhfiea~-----~~~kaieaai~akew~kai~ildniqd-qk--~~s~yy~~iadhyan~~dfe~ae~lf~e~--- 791 (1636)
T KOG3616|consen 723 DAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQD-QK--TASGYYGEIADHYANKGDFEIAEELFTEA--- 791 (1636)
T ss_pred HHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhh-hc--cccccchHHHHHhccchhHHHHHHHHHhc---
Confidence 77777664421 111234455666778888888887766 22 23334556667778888888887776532
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--ccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 003439 478 CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS--SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 555 (820)
Q Consensus 478 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 555 (820)
..++--|+||++.|+|++|.++-++...|. +..|-+-..-.-.+|++.+|.++|-... .|+. .
T Consensus 792 ------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----a 856 (1636)
T KOG3616|consen 792 ------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----A 856 (1636)
T ss_pred ------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----H
Confidence 234556778888888888877777665433 2335555555566677777766653321 2432 3
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 003439 556 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMEL 635 (820)
Q Consensus 556 l~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~ 635 (820)
|..|-+.|..+..+++.++-. | ..-..+.-.+..-|-..|++.+|.+-|-+.+ -|.+-++.|...+-+++
T Consensus 857 iqmydk~~~~ddmirlv~k~h---~-d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~d 926 (1636)
T KOG3616|consen 857 IQMYDKHGLDDDMIRLVEKHH---G-DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWED 926 (1636)
T ss_pred HHHHHhhCcchHHHHHHHHhC---h-hhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHH
Confidence 445666666666666554221 1 1111233344555666677777776665543 25555666666666665
Q ss_pred HHHHHH
Q 003439 636 GAVASD 641 (820)
Q Consensus 636 a~~~~~ 641 (820)
|-++.+
T Consensus 927 ayriak 932 (1636)
T KOG3616|consen 927 AYRIAK 932 (1636)
T ss_pred HHHHHh
Confidence 555443
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=4.6e-07 Score=89.41 Aligned_cols=412 Identities=13% Similarity=0.138 Sum_probs=220.6
Q ss_pred HHhhcCCChhHHHHHhccCC---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHH
Q 003439 186 HMYCRFGLANVARKLFDDMP---VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS 262 (820)
Q Consensus 186 ~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 262 (820)
..|-+.|++++|..++.-+. .++...|--|.-.+.-.|.+.+|..+-.... -++-.-..++...-+.++-++
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHH
Confidence 34556778888877776544 2445556666666666677777766644432 122233334444456666666
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCC--CCchHHHH-HHHHHHhCCChhhHHHHHHHHHHc
Q 003439 263 GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME--RDVVSWNS-IIAAYEQSNDPITAHGFFTTMQQA 339 (820)
Q Consensus 263 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~d~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~ 339 (820)
-.++|+.+... ..-.-+|..+.-..-.+.+|..++.++.. |+-...|. |.-+|.+..-++-+.++++--.+.
T Consensus 140 ~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 140 ILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 66666655432 12223344444444556777777777655 33334443 334556666666666666555443
Q ss_pred CCCCCcchHHHHHHHHHhcC--cchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHH
Q 003439 340 GIQPDLLTLVSLTSIVAQLN--DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNT 417 (820)
Q Consensus 340 g~~pd~~t~~~ll~a~~~~~--~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~ 417 (820)
-||+ |+..=+.+|..-. +-..+.+-...+.+.+ -.. -..+.-.++. |.+.
T Consensus 215 --~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~-~~~-----~~f~~~l~rH----------------NLVv--- 266 (557)
T KOG3785|consen 215 --FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNI-DQE-----YPFIEYLCRH----------------NLVV--- 266 (557)
T ss_pred --CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcc-ccc-----chhHHHHHHc----------------CeEE---
Confidence 2332 2333333332211 1111222222222221 000 0011111111 1110
Q ss_pred HHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchh-----HHHHHHHH
Q 003439 418 LITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF-----VATCLVDM 492 (820)
Q Consensus 418 li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~-----~~~~li~~ 492 (820)
-...+.|++++-.+.+ +-|... ..++-.+.+.+++.+|..+...+.- ..|... +..++.+-
T Consensus 267 -------FrngEgALqVLP~L~~---~IPEAR--lNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe 332 (557)
T KOG3785|consen 267 -------FRNGEGALQVLPSLMK---HIPEAR--LNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQE 332 (557)
T ss_pred -------EeCCccHHHhchHHHh---hChHhh--hhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhh
Confidence 0122444444443333 233221 1222234445555554444332210 011111 12222222
Q ss_pred HHhcCCHHHHHHHHhhCC----CCCccc-cchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 003439 493 YGKCGRIDDAMSLFYQVP----RSSSVP-WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSE 567 (820)
Q Consensus 493 y~~~g~~~~A~~~~~~~~----~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 567 (820)
.+....+.-|.+.|.-.. .-|.++ -.+|.+.+.-..++++.+..+.....- +..|..--..+..|.+..|++.+
T Consensus 333 ~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 333 TGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVE 411 (557)
T ss_pred cCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHH
Confidence 223334566777776544 233333 667888888888899999988888775 33333333457889999999999
Q ss_pred HHHHHHHhHHhhCCC-CChhHHHH-HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCChhHHHHHHHHHh
Q 003439 568 GQRYFHMMQEEFGIK-PHLKHYGC-MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL-GACRIHGNMELGAVASDRLF 644 (820)
Q Consensus 568 a~~~~~~m~~~~g~~-p~~~~~~~-li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~ 644 (820)
|.++|-.+. |.+ .|..+|.. |...|.++|+.+-|.+++-++..+.+..+...+| +-|.+.+.+--|-++|+.+.
T Consensus 412 aEelf~~is---~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 412 AEELFIRIS---GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HHHHHhhhc---ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 999997665 333 34556654 5678999999999999999986444555544444 56999999999999999999
Q ss_pred ccCCCCcchH
Q 003439 645 EVDSENVGYY 654 (820)
Q Consensus 645 ~~~p~~~~~~ 654 (820)
.++| +++.|
T Consensus 489 ~lDP-~pEnW 497 (557)
T KOG3785|consen 489 ILDP-TPENW 497 (557)
T ss_pred ccCC-Ccccc
Confidence 9998 45544
No 68
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.06 E-value=1.6e-07 Score=94.78 Aligned_cols=285 Identities=13% Similarity=0.024 Sum_probs=169.0
Q ss_pred CCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHH
Q 003439 222 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV 301 (820)
Q Consensus 222 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 301 (820)
.|++..|.++..+-.+.+-.| ...|.....+.-..|+.+.+-.+..++.+..-.++..+.-+........|+.+.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666655554332 2334444555566677777777777777664466777777777888888888888777
Q ss_pred HhccC---CCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcC
Q 003439 302 FDQMM---ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 378 (820)
Q Consensus 302 f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 378 (820)
.+.+. .++..........|.+.|++.+...++.+|.+.|+--|...- .
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------------------~ 226 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------------------R 226 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------------------H
Confidence 66553 357778888889999999999999999999888765443211 0
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHH
Q 003439 379 EDVIIGNAVVDMYAKLGIINSACAVFEGLPV---KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL 455 (820)
Q Consensus 379 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll 455 (820)
....+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+ .+..|.. ..+
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~D~~L----~~~ 301 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQWDPRL----CRL 301 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hccChhH----HHH
Confidence 1112233333333333334444445555552 2455555666677777777777777777766 5555551 122
Q ss_pred HHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCccccchHHHHHHhcCChHHH
Q 003439 456 PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP--RSSSVPWNAIISCHGIHGQGDKA 533 (820)
Q Consensus 456 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A 533 (820)
-.+.+.++.+.-.+..+.-.+.. +.++..+.+|...|.+.+.+.+|.+.|+... +++...|+-+..+|.+.|+..+|
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence 23445555555544444443321 1233555666666666666666666665433 44444455555555555555555
Q ss_pred HHHHHHHHH
Q 003439 534 LNFFRQMLD 542 (820)
Q Consensus 534 ~~l~~~m~~ 542 (820)
.+.+++.+.
T Consensus 381 ~~~r~e~L~ 389 (400)
T COG3071 381 EQVRREALL 389 (400)
T ss_pred HHHHHHHHH
Confidence 555554443
No 69
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.05 E-value=4.4e-06 Score=89.05 Aligned_cols=458 Identities=13% Similarity=0.109 Sum_probs=254.7
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHhccCCC-----CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHH
Q 003439 178 VFVAASLLHMYCRFGLANVARKLFDDMPV-----RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILP 252 (820)
Q Consensus 178 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 252 (820)
+.+|-.-+....+.|++..-++.|++... .....|...|.-.-+.|-++-++.++++..+. ++..-.--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 45677777888889999999999987542 24457999999999999999999999998764 3333556677
Q ss_pred hhhcCCChHHHHHHHHHHHHhC------CCccHHHHHHHHHHHHccCCHH---HHHHHHhccCCC--Cc--hHHHHHHHH
Q 003439 253 VCARSDNILSGLLIHLYIVKHG------LEFNLFVSNNLINMYAKFGMMR---HALRVFDQMMER--DV--VSWNSIIAA 319 (820)
Q Consensus 253 a~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~y~~~g~~~---~A~~~f~~m~~~--d~--~~~~~li~~ 319 (820)
-++..+++++|.+.+..++... .+.+...|.-+-+..++.-+.- ....+++.+..+ |. ..|++|..-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 7788999999999988875432 3556777888887777664432 344556665543 33 479999999
Q ss_pred HHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHH
Q 003439 320 YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 399 (820)
Q Consensus 320 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~ 399 (820)
|.+.|.+++|.++|++.... .....-|+.+..+|+.-.....+..+- .....+.-+.+.. +++-
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~-------------dl~~ 321 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDV-------------DLEL 321 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhh-------------hHHH
Confidence 99999999999999998764 233445666777776544322222221 1111110111111 1222
Q ss_pred HHHHHhcCC---------------CCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcc------cHhhHHHHh
Q 003439 400 ACAVFEGLP---------------VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG------TYVSILPAY 458 (820)
Q Consensus 400 A~~~f~~~~---------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~------t~~~ll~a~ 458 (820)
...-|+.+. ..++..|..-... ..|+..+-...|.+..+ .+.|-.. .+..+..-|
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~--~vdP~ka~Gs~~~Lw~~faklY 397 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVK--TVDPKKAVGSPGTLWVEFAKLY 397 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHH--ccCcccCCCChhhHHHHHHHHH
Confidence 222232222 1244455444332 35666677777776654 3444332 234444555
Q ss_pred hccCChhHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCccccchHHHHHHhcCChHHH
Q 003439 459 SHVGALRQGIKIHARVIKNCLCFD---VFVATCLVDMYGKCGRIDDAMSLFYQVP--RSSSVPWNAIISCHGIHGQGDKA 533 (820)
Q Consensus 459 ~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A 533 (820)
-..|+++.|+.+|+...+-.++.- ..+|..-.++=.+..+++.|.++.++.. +.+.. ..+..++.+.++
T Consensus 398 e~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~------~~~yd~~~pvQ~ 471 (835)
T KOG2047|consen 398 ENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE------LEYYDNSEPVQA 471 (835)
T ss_pred HhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh------hhhhcCCCcHHH
Confidence 556666666666666655433221 2344444444455555555555555443 11100 111111111111
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 003439 534 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-P 612 (820)
Q Consensus 534 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~ 612 (820)
. + .-+...|...+..-...|-++....+++.+..-.-..|.. .-...-.+-...-++++.+.+++- +
T Consensus 472 r-l---------hrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqi--i~NyAmfLEeh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 472 R-L---------HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQI--IINYAMFLEEHKYFEESFKAYERGIS 539 (835)
T ss_pred H-H---------HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHhhHHHHHHHHHHHcCCc
Confidence 0 0 0011223344444444556666666666666432233332 112222344455667777777664 2
Q ss_pred -C-CCCHH-HHHHHHHHHHh-c--CChhHHHHHHHHHhccCCCCc--chHHhHHHHhhhcCCcchHHHHHHHH
Q 003439 613 -V-RPDAS-IWGALLGACRI-H--GNMELGAVASDRLFEVDSENV--GYYVLMSNIYANVGKWEGVDEVRSLA 677 (820)
Q Consensus 613 -~-~p~~~-~~~~ll~~~~~-~--g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~y~~~g~~~~A~~~~~~m 677 (820)
+ -|+.. +|++.+.-..+ . ..++.|+.+|+++++.-|... +.|.+.+..-.+-|.-..|..+++++
T Consensus 540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2 24444 77776655432 2 256777777777777665321 12333444444445555666666554
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=1.6e-08 Score=98.43 Aligned_cols=228 Identities=15% Similarity=0.175 Sum_probs=155.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 003439 416 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK 495 (820)
Q Consensus 416 ~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 495 (820)
+.|...|.+.|.+.+|.+.|+.-.+ ..|-..||..+-.+|.+..+++.|..++..-++. ++-++....-+...+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~---q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT---QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh---cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 4455666677777777776666555 3455556666666666666666666666555543 22233333344455555
Q ss_pred cCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 003439 496 CGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 572 (820)
Q Consensus 496 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 572 (820)
.++.++|.++++... ..++.....+..+|.-.++++-|+..|+++++.|+. +...|+.+.-+|...+++|-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 666666766666554 334555566666777777777788888877777743 4556666666677777777666666
Q ss_pred HHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 003439 573 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD--ASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 650 (820)
Q Consensus 573 ~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 650 (820)
++.... | ..|+ ..+|-.|.......||+..|.+.|+-++.-+|++
T Consensus 382 ~RAlst--------------------------------a-t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 382 QRALST--------------------------------A-TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHHHhh--------------------------------c-cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 554421 1 1232 3377777777788899999999999999999999
Q ss_pred cchHHhHHHHhhhcCCcchHHHHHHHHHhCC
Q 003439 651 VGYYVLMSNIYANVGKWEGVDEVRSLARDRG 681 (820)
Q Consensus 651 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 681 (820)
...++.|+-+-.+.|+.++|+.+++.+.+..
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9999999999999999999999999887653
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.99 E-value=2.4e-08 Score=103.83 Aligned_cols=189 Identities=15% Similarity=0.105 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHH
Q 003439 484 FVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTAC 559 (820)
Q Consensus 484 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~ 559 (820)
..+..+...|.+.|+.++|...|++.. +.+...|+.+...|...|++++|++.|++.++ +.|+. .++..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 445666667778888888888777665 34556688888888888888888888888887 56754 4677777778
Q ss_pred HhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHH
Q 003439 560 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM--PVRPDASIWGALLGACRIHGNMELGA 637 (820)
Q Consensus 560 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~ 637 (820)
...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++. ...|+. |. ........|+..++
T Consensus 143 ~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~~-~~~~~~~lg~~~~~- 215 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ--WG-WNIVEFYLGKISEE- 215 (296)
T ss_pred HHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc--cH-HHHHHHHccCCCHH-
Confidence 888888888888887764 3454332222223345567888888888654 223332 32 12223345555443
Q ss_pred HHHHHHh-------ccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCC
Q 003439 638 VASDRLF-------EVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 681 (820)
Q Consensus 638 ~~~~~~~-------~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 681 (820)
..++.+. ++.|+....|..|+.+|...|++++|...+++..+.+
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2333333 3456666788888888888888888888888887654
No 72
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.96 E-value=6.5e-06 Score=89.92 Aligned_cols=399 Identities=12% Similarity=0.070 Sum_probs=240.6
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHhccCC---CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHH
Q 003439 274 GLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 350 (820)
Q Consensus 274 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 350 (820)
.+.-|..+|..|.-+...+|+++.+.+.|++... .....|+.+...|...|.-..|..+.+.-....-.|+..+.-.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3566888999999999999999999999988754 3556799999999999999999999988765544455444433
Q ss_pred HHH-HHH-hcCcchhhhhHHHHHHHhCC-c--CcchhHHhHHHHHHHhc-----------CCHHHHHHHHhcCC-----C
Q 003439 351 LTS-IVA-QLNDCRNSRSVHGFIMRRGW-F--MEDVIIGNAVVDMYAKL-----------GIINSACAVFEGLP-----V 409 (820)
Q Consensus 351 ll~-a~~-~~~~~~~a~~i~~~~~~~g~-~--~~~~~~~~~li~~y~~~-----------g~~~~A~~~f~~~~-----~ 409 (820)
+.. .|. +.+..+++..+-..++.... . ......+-.+.-+|... ....++...+++.. +
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 333 332 34566666666665555210 1 11223333333333321 11223334444332 2
Q ss_pred CCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHH-hCCCCchhHHHH
Q 003439 410 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK-NCLCFDVFVATC 488 (820)
Q Consensus 410 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~ 488 (820)
++++.| +---|+..++.+.|++..++..+ -+-.-+...+..+.-.++..+++..|..+.+.... .|........
T Consensus 478 p~~if~--lalq~A~~R~l~sAl~~~~eaL~-l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~-- 552 (799)
T KOG4162|consen 478 PLVIFY--LALQYAEQRQLTSALDYAREALA-LNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDG-- 552 (799)
T ss_pred chHHHH--HHHHHHHHHhHHHHHHHHHHHHH-hcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchh--
Confidence 233333 23345666777888888877776 33334445555555566667777777777766543 2221110000
Q ss_pred HHHHHHhcCCHHHHHHHHhhCC---C--CCccc---cchHH----HHHHhcCChHHHHHHHHH-----------------
Q 003439 489 LVDMYGKCGRIDDAMSLFYQVP---R--SSSVP---WNAII----SCHGIHGQGDKALNFFRQ----------------- 539 (820)
Q Consensus 489 li~~y~~~g~~~~A~~~~~~~~---~--~~~~~---~~~li----~~~~~~g~~~~A~~l~~~----------------- 539 (820)
-+..-...++.++|......+. + +.+.. -..+. ......++..+|.+..++
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~ 632 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK 632 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc
Confidence 0111112333333333221111 0 00000 00000 000001111112111111
Q ss_pred HHHcCCCCChh--------HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 003439 540 MLDEGVRPDHI--------TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQN 610 (820)
Q Consensus 540 m~~~g~~p~~~--------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~ 610 (820)
|...-+.|+.. .|......+...+..++|...+.+.. ++.| ....|.-....+...|.++||.+.|..
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 11111222221 24445567788889999987776665 4445 345667777888899999999999887
Q ss_pred C-CCCCCHH-HHHHHHHHHHhcCChhHHHH--HHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 611 M-PVRPDAS-IWGALLGACRIHGNMELGAV--ASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 611 m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
. .+.|+.+ +..++...+...|+...|.. ++..+++++|.++..|..|+.++.+.|+.++|.+-|+...+.
T Consensus 710 Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 710 ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 6 6788765 88899999999999888888 999999999999999999999999999999999999988765
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.96 E-value=3.7e-08 Score=92.04 Aligned_cols=161 Identities=11% Similarity=0.052 Sum_probs=140.0
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDL 594 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~ 594 (820)
...|..+|.+.|+...|..-+++.++ ..|+.. ++..+...|.+.|..+.|.+.|+... .+.|+ ..+.|....-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHH
Confidence 34567788999999999999999999 577764 89999999999999999999999887 45664 5788889999
Q ss_pred HHHcCCHHHHHHHHHhCCCCC---C-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchH
Q 003439 595 FGRAGHLGMAHNFIQNMPVRP---D-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGV 670 (820)
Q Consensus 595 ~~~~g~~~eA~~~~~~m~~~p---~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 670 (820)
++..|++++|...|++.-..| . ..+|..+...-.+.|+.+.|+..+++.++++|+.+.....+++...+.|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 999999999999999883333 2 348888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 003439 671 DEVRSLARDRGL 682 (820)
Q Consensus 671 ~~~~~~m~~~~~ 682 (820)
..+++....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998877654
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=98.96 E-value=3.9e-08 Score=111.79 Aligned_cols=211 Identities=11% Similarity=-0.006 Sum_probs=163.0
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH---------hcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCC
Q 003439 462 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYG---------KCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQ 529 (820)
Q Consensus 462 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~---------~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 529 (820)
+++++|.+.++.+++.... +...+..+..+|. ..+++++|...+++.. +.+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 3467888999988876432 3445555555443 2345889999998876 4456678888889999999
Q ss_pred hHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChh-HHHHHHHHHHHcCCHHHHHHH
Q 003439 530 GDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK-HYGCMVDLFGRAGHLGMAHNF 607 (820)
Q Consensus 530 ~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~-~~~~li~~~~~~g~~~eA~~~ 607 (820)
+++|+..|++.++ ..|+. ..+..+..++...|++++|...++...+ +.|+.. .+..+...+...|++++|.+.
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 56765 4777888899999999999999999884 456532 333445557778999999999
Q ss_pred HHhCC--CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 608 IQNMP--VRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 608 ~~~m~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+++.- ..|+ ...+..+..++...|+.++|+..++++....|++......++..|...| ++|...++.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 98862 2354 4467778888889999999999999998888988888888888888888 4788777776653
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.95 E-value=1.1e-07 Score=95.63 Aligned_cols=198 Identities=14% Similarity=0.157 Sum_probs=106.6
Q ss_pred chHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCC-cccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 003439 412 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN-QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 490 (820)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 490 (820)
...+..+...|...|++++|.+.|++..+ ..|+ ...+..+...+...|+++.|.+.++...+... .+...+..+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~ 106 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALE---HDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHH
Confidence 45677777888888888888888888766 2343 23334444555555666666666555554432 1233334444
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHH
Q 003439 491 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQ 569 (820)
Q Consensus 491 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 569 (820)
..| ...|++++|.+.|++.......|. ...+..+..++...|++++|.
T Consensus 107 ~~~-------------------------------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 107 TFL-------------------------------CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred HHH-------------------------------HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence 444 444555555555555544221121 223444455555666666666
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 003439 570 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PV-RPDASIWGALLGACRIHGNMELGAVASDRLFEV 646 (820)
Q Consensus 570 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 646 (820)
+.+...... .+.+...+..+...+...|++++|.+.+++. .. +++...+..+...+...|+.+.|....+.+.+.
T Consensus 156 ~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 156 KYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 666555532 1112344555556666666666666666554 11 223344445555566666666666665555443
No 76
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=8.2e-05 Score=83.26 Aligned_cols=540 Identities=13% Similarity=0.151 Sum_probs=298.5
Q ss_pred hHHHHHHHHccCChHHHHHHhcccCC-CCcchHHH-----HHHHHHhCCCchHHHHHHHHHhhhCCCCCCccccHHHHHh
Q 003439 82 STKLVNFYANLGDLSFSRHTFDHISY-RNVYTWNS-----MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKA 155 (820)
Q Consensus 82 ~~~ll~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~-----li~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~t~~~ll~~ 155 (820)
+-.+.+.+.+.|-+..|.+.+..+.. ..++..+. -+..|.-.-.++++++.+.. |...+++-|..+...+-..
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclka-ml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKA-MLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHhhhHHHHHHHHH
Confidence 55566778888888888888876642 11111111 12344445567888888888 6666666665443332222
Q ss_pred hcCCcchH---HHHHHHHH-----------hCCCCcHHHHHHHHHHhhcCCChhHHHHHhccCC--C-------------
Q 003439 156 CRNLVDGK---KIHCSVLK-----------LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP--V------------- 206 (820)
Q Consensus 156 ~~~~~~~~---~~~~~~~~-----------~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--~------------- 206 (820)
+...-.+. ++|+.... -.+..|+.+.-.-|.+-|+.|++.+.+++-++-. .
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 21111111 22222111 1356788888889999999999999888865542 0
Q ss_pred ----C-----------------------------------------------Cccc-----------------HHHHHHH
Q 003439 207 ----R-----------------------------------------------DSGS-----------------WNAMISG 218 (820)
Q Consensus 207 ----~-----------------------------------------------~~~~-----------------~~~li~~ 218 (820)
| |+.+ -+.|+.-
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~E 847 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEE 847 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHH
Confidence 0 1111 1111222
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHH----------HHHHHHHHHhCC----------Ccc
Q 003439 219 YCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSG----------LLIHLYIVKHGL----------EFN 278 (820)
Q Consensus 219 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a----------~~~~~~~~~~g~----------~~~ 278 (820)
.-+.++..--+..++...+.|.. |..|++++.+.|...++-.+- +.+=....+... ..|
T Consensus 848 vEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD 926 (1666)
T KOG0985|consen 848 VEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCD 926 (1666)
T ss_pred HHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCc
Confidence 22333444444455555666654 788888888777654432111 001011111100 001
Q ss_pred H---------HHHHHHHHHHHccCC-----------HHHHHHHHhccC-----C-CCchHHHHHHHHHHhCCChhhHHHH
Q 003439 279 L---------FVSNNLINMYAKFGM-----------MRHALRVFDQMM-----E-RDVVSWNSIIAAYEQSNDPITAHGF 332 (820)
Q Consensus 279 ~---------~~~~~li~~y~~~g~-----------~~~A~~~f~~m~-----~-~d~~~~~~li~~~~~~g~~~~A~~~ 332 (820)
. ..+-.+.....+..+ -..-+.+.+... + .|+..-+.-+.++...+-+.+-+++
T Consensus 927 ~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIEL 1006 (1666)
T KOG0985|consen 927 LELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIEL 1006 (1666)
T ss_pred HHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHH
Confidence 0 111111121222111 112234444432 2 4666666778889999999999999
Q ss_pred HHHHHHcCCCC-CcchHHHHHHHHH----------------------------hcCcchhhhhHHHHHHHhCCcCcchhH
Q 003439 333 FTTMQQAGIQP-DLLTLVSLTSIVA----------------------------QLNDCRNSRSVHGFIMRRGWFMEDVII 383 (820)
Q Consensus 333 ~~~m~~~g~~p-d~~t~~~ll~a~~----------------------------~~~~~~~a~~i~~~~~~~g~~~~~~~~ 383 (820)
+++..-..-.- ....+-.++-.-+ ..+-+++|..++.. +..+...
T Consensus 1007 LEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkk------f~~n~~A 1080 (1666)
T KOG0985|consen 1007 LEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKK------FDMNVSA 1080 (1666)
T ss_pred HHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHH------hcccHHH
Confidence 99886432111 1111111111111 11122222222222 1222222
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCC
Q 003439 384 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 463 (820)
Q Consensus 384 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~ 463 (820)
.+.|++ .-+.++.|.+.-++..+ ...|+.+..+-.+.|...+|++-|-+. -|...|.-+++.+.+.|.
T Consensus 1081 ~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~ 1148 (1666)
T KOG0985|consen 1081 IQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGK 1148 (1666)
T ss_pred HHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCc
Confidence 222222 22344444444444433 356999999999999999999887554 255678899999999999
Q ss_pred hhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHc
Q 003439 464 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 543 (820)
Q Consensus 464 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 543 (820)
+++-..++..+.+..-+|. +-+.||-+|++.+++.+-++.+. .+|..-......-|...|.++.|.-+|..
T Consensus 1149 ~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---- 1219 (1666)
T KOG0985|consen 1149 YEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSN---- 1219 (1666)
T ss_pred HHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHH----
Confidence 9999999888888766654 44678889999999888776652 44555555566666677777777666543
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 003439 544 GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 623 (820)
Q Consensus 544 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~l 623 (820)
...|..|...+.+.|.+..|...-+... +..+|.-+-.++...+.+.-|. +..+.+--...-..-|
T Consensus 1220 -----vSN~a~La~TLV~LgeyQ~AVD~aRKAn-------s~ktWK~VcfaCvd~~EFrlAQ--iCGL~iivhadeLeel 1285 (1666)
T KOG0985|consen 1220 -----VSNFAKLASTLVYLGEYQGAVDAARKAN-------STKTWKEVCFACVDKEEFRLAQ--ICGLNIIVHADELEEL 1285 (1666)
T ss_pred -----hhhHHHHHHHHHHHHHHHHHHHHhhhcc-------chhHHHHHHHHHhchhhhhHHH--hcCceEEEehHhHHHH
Confidence 2346667777777777777766443221 3345555545544443333221 1111111122234457
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhc
Q 003439 624 LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 664 (820)
Q Consensus 624 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 664 (820)
+.-|...|-+++-+.+++..+.++--+.+.+.-|+-+|++-
T Consensus 1286 i~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1286 IEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 77778888888888888888888877777777777777654
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=6.6e-06 Score=83.22 Aligned_cols=405 Identities=11% Similarity=0.044 Sum_probs=246.1
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHH-HHHHHHHHhCC-ChhhHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 003439 278 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSW-NSIIAAYEQSN-DPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 355 (820)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~-~~li~~~~~~g-~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 355 (820)
+...-.-.+..|-..++-+.|.....+.+..-...- |.|+.-+.+.| +-.++.--+++...+-+ .-...|.+.
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp-----~aL~~i~~l 170 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECP-----MALQVIEAL 170 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcc-----hHHHHHHHH
Confidence 555666788889999999999999988877533333 44444333333 22233323333322210 000111111
Q ss_pred HhcCcchhhhhHHH-HHHHhCCcCcchhHHhHHHHHHHhc--CCHHHHHHHHhcCC-----CCCchHHHHHHHHHHHcCC
Q 003439 356 AQLNDCRNSRSVHG-FIMRRGWFMEDVIIGNAVVDMYAKL--GIINSACAVFEGLP-----VKDVISWNTLITGYAQNGL 427 (820)
Q Consensus 356 ~~~~~~~~a~~i~~-~~~~~g~~~~~~~~~~~li~~y~~~--g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~ 427 (820)
.+.+ -.+.++-. .+.+.. .++.......-+.+|+.+ ++-..|...|-... ..|+.....+...+...|+
T Consensus 171 l~l~--v~g~e~~S~~m~~~~-~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gd 247 (564)
T KOG1174|consen 171 LELG--VNGNEINSLVMHAAT-VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGD 247 (564)
T ss_pred HHHh--hcchhhhhhhhhhee-cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcC
Confidence 1111 00000000 111111 222222223334444443 33334433332222 3367778888889999999
Q ss_pred hHHHHHHHHhhhhcCCCCCCcccHhhHHH-HhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 003439 428 ASEAIEVFQMMEECNEINPNQGTYVSILP-AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 506 (820)
Q Consensus 428 ~~~A~~l~~~m~~~~g~~pd~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 506 (820)
.++|+..|++.+. +.|+..+-.-+-. .+...|+.+....+..++....- .+...|-.-....-..++++.|+.+-
T Consensus 248 n~~a~~~Fe~~~~---~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~ 323 (564)
T KOG1174|consen 248 YFQAEDIFSSTLC---ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFV 323 (564)
T ss_pred chHHHHHHHHHhh---CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 9999999998866 6666544222111 23566777777777666644321 11111111222334456788888888
Q ss_pred hhCCCCCccccchH---HHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCC
Q 003439 507 YQVPRSSSVPWNAI---ISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 582 (820)
Q Consensus 507 ~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~ 582 (820)
++..+.|...-.++ ...+.+.|++++|.-.|+..+. +.| +...|..|+..|...|.+.+|.-.-+...+. +.
T Consensus 324 eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~ 399 (564)
T KOG1174|consen 324 EKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQ 399 (564)
T ss_pred HHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hh
Confidence 87775554443333 3567788999999999998888 566 5579999999999999999988776655532 22
Q ss_pred CChhHHHHHH-HHHHH-cCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHH
Q 003439 583 PHLKHYGCMV-DLFGR-AGHLGMAHNFIQNM-PVRPDAS-IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 658 (820)
Q Consensus 583 p~~~~~~~li-~~~~~-~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 658 (820)
.+..+.+-+. +.+.- .---++|.+++++. .++|+-. ..+.+...|...|..+.++.++++.+...| |...++.|+
T Consensus 400 ~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lg 478 (564)
T KOG1174|consen 400 NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLG 478 (564)
T ss_pred cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHH
Confidence 3333333331 22221 22346788888876 6788754 777888889999999999999999999988 677889999
Q ss_pred HHhhhcCCcchHHHHHHHHHhCCCCcCCceeEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHH
Q 003439 659 NIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMK 725 (820)
Q Consensus 659 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 725 (820)
+++.....+.+|...|..+... .|+.+...+-+..+.++|+
T Consensus 479 d~~~A~Ne~Q~am~~y~~ALr~--------------------------dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 479 DIMRAQNEPQKAMEYYYKALRQ--------------------------DPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--------------------------CccchHHHHHHHHHHhccC
Confidence 9999999999999999887654 4555666666666666665
No 78
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=6.1e-06 Score=87.40 Aligned_cols=365 Identities=13% Similarity=0.141 Sum_probs=201.7
Q ss_pred HHHHHccCChHHHHHHhcccCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHHhhhCCCCCCccccHHHHHhhcCCcch
Q 003439 86 VNFYANLGDLSFSRHTFDHISY--R-NVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDG 162 (820)
Q Consensus 86 l~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 162 (820)
++.+.+.|++++|.+.-+++.. | |...+..-+-++.+.+++++|+.+.+. ..++
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~~-------------------- 75 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKK---NGAL-------------------- 75 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cchh--------------------
Confidence 5667788899998888777643 3 455667777888999999999865554 1000
Q ss_pred HHHHHHHHHhCCCCcHHHHHH--HHHHhh--cCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 003439 163 KKIHCSVLKLGFEWDVFVAAS--LLHMYC--RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE 238 (820)
Q Consensus 163 ~~~~~~~~~~g~~~~~~~~~~--li~~y~--~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 238 (820)
.+++. +=.+|| +.+..++|...++....-|..+-..=...+-+.|++++|+.+|+.+.++
T Consensus 76 ----------------~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 76 ----------------LVINSFFFEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred ----------------hhcchhhHHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 11111 234455 6789999999998655555445555667788999999999999999776
Q ss_pred CCCC-ChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCc--cH-HHHHHHHHHHHccCCHHHHHHHHhcc--------C
Q 003439 239 GVSM-DPITVASILPVCARSDNILSGLLIHLYIVKHGLEF--NL-FVSNNLINMYAKFGMMRHALRVFDQM--------M 306 (820)
Q Consensus 239 g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~-~~~~~li~~y~~~g~~~~A~~~f~~m--------~ 306 (820)
+..- |...-..++.+-+.. +. ..+......| +- ..|| ....+...|++.+|+++++.. .
T Consensus 140 ~~dd~d~~~r~nl~a~~a~l-------~~-~~~q~v~~v~e~syel~yN-~Ac~~i~~gky~qA~elL~kA~~~~~e~l~ 210 (652)
T KOG2376|consen 140 NSDDQDEERRANLLAVAAAL-------QV-QLLQSVPEVPEDSYELLYN-TACILIENGKYNQAIELLEKALRICREKLE 210 (652)
T ss_pred CCchHHHHHHHHHHHHHHhh-------hH-HHHHhccCCCcchHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHHHHhhc
Confidence 5431 111222222211110 00 0111122222 11 2233 344567789999999998776 2
Q ss_pred CCCc-----hH-----HHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHH---HHHHHhcCcchhh--hhHH---
Q 003439 307 ERDV-----VS-----WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL---TSIVAQLNDCRNS--RSVH--- 368 (820)
Q Consensus 307 ~~d~-----~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l---l~a~~~~~~~~~a--~~i~--- 368 (820)
+.|. .. ---|.-.+-..|+-++|..++....+.. .+|....... |.+...-.++-.+ ...+
T Consensus 211 ~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~ 289 (652)
T KOG2376|consen 211 DEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQ 289 (652)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHH
Confidence 2111 11 1224455667899999999999988764 3444322222 2222222222221 0011
Q ss_pred ---------HHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCC-chHHHHHHHHHH--HcCChHHHHHHHH
Q 003439 369 ---------GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD-VISWNTLITGYA--QNGLASEAIEVFQ 436 (820)
Q Consensus 369 ---------~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~l~~ 436 (820)
..+... -......-+.++.+|. +..+.++++-..++... ...+.+++.... +...+.+|.+++.
T Consensus 290 ~~~l~~~~l~~Ls~~--qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~ 365 (652)
T KOG2376|consen 290 VFKLAEFLLSKLSKK--QKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLL 365 (652)
T ss_pred HHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 011000 0111222245555554 44566666666666443 333444443322 2234666777776
Q ss_pred hhhhcCCCCCCc--ccHhhHHHHhhccCChhHHHHHHH--------HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 003439 437 MMEECNEINPNQ--GTYVSILPAYSHVGALRQGIKIHA--------RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 506 (820)
Q Consensus 437 ~m~~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~i~~--------~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 506 (820)
..-+ -.|+. ......+......|+++.|.+++. .+.+.+..| .+..+++.+|.+.++-+.|..++
T Consensus 366 ~~~~---~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl 440 (652)
T KOG2376|consen 366 QFAD---GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVL 440 (652)
T ss_pred HHhc---cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHH
Confidence 6654 33433 233344455667788888888877 444444443 44566777777777777777666
Q ss_pred hh
Q 003439 507 YQ 508 (820)
Q Consensus 507 ~~ 508 (820)
.+
T Consensus 441 ~~ 442 (652)
T KOG2376|consen 441 DS 442 (652)
T ss_pred HH
Confidence 43
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.88 E-value=2.4e-07 Score=96.40 Aligned_cols=227 Identities=9% Similarity=-0.028 Sum_probs=147.2
Q ss_pred CChHHHHHHHHhhhhcCCCCCCc--ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 003439 426 GLASEAIEVFQMMEECNEINPNQ--GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 503 (820)
Q Consensus 426 g~~~~A~~l~~~m~~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 503 (820)
+..+.++.-+.++.......|+. ..|......+...|+.+.|...+..+++... .+...++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455666665555422233322 2344444556667777777777777766542 35678888888899999999999
Q ss_pred HHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhC
Q 003439 504 SLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFG 580 (820)
Q Consensus 504 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g 580 (820)
..|++.. +.+...|..+...+...|++++|++.|++..+ ..|+..........+...++.++|.+.|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 9888775 33456688888888899999999999999988 567654322223334556789999999976553 3
Q ss_pred CCCChhHHHHHHHHHHHcCCH--HHHHHHHHhC-C----CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-c
Q 003439 581 IKPHLKHYGCMVDLFGRAGHL--GMAHNFIQNM-P----VRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSEN-V 651 (820)
Q Consensus 581 ~~p~~~~~~~li~~~~~~g~~--~eA~~~~~~m-~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-~ 651 (820)
..|+... ..++..+ .|++ +++.+.+.+. . ..| ...+|..+...+.+.|++++|+..|+++++.+|.+ .
T Consensus 195 ~~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 3444322 2333333 4444 3333333321 1 112 23489999999999999999999999999999744 4
Q ss_pred chHHhHHHH
Q 003439 652 GYYVLMSNI 660 (820)
Q Consensus 652 ~~~~~l~~~ 660 (820)
.+-..++.+
T Consensus 272 e~~~~~~e~ 280 (296)
T PRK11189 272 EHRYALLEL 280 (296)
T ss_pred HHHHHHHHH
Confidence 333344443
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.84 E-value=5.3e-07 Score=97.78 Aligned_cols=95 Identities=15% Similarity=0.248 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhh----C-CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC
Q 003439 551 TFVSLLTACSHSGLVSEGQRYFHMMQEEF----G-IKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNM--------PVRPD 616 (820)
Q Consensus 551 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----g-~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m--------~~~p~ 616 (820)
++..|...|.+.|++++|.++|+++.... | ..+. ...++.|...|.+.++.++|.++|.+. +..|+
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 78888888888888888888888876542 1 1222 356777888888888888888888765 34466
Q ss_pred HH-HHHHHHHHHHhcCChhHHHHHHHHHhc
Q 003439 617 AS-IWGALLGACRIHGNMELGAVASDRLFE 645 (820)
Q Consensus 617 ~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~ 645 (820)
.. +|..|...|...|+++.|+++.+.+..
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 54 999999999999999999999988764
No 81
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.81 E-value=1.2e-05 Score=87.91 Aligned_cols=444 Identities=12% Similarity=0.068 Sum_probs=239.3
Q ss_pred HhCCCCcHHHHHHHHHHhhcCCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-HH
Q 003439 171 KLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPV---RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP-IT 246 (820)
Q Consensus 171 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t 246 (820)
...+..|..+|-.|.-+..++|+++.+-+.|++... .....|+.+-..|.-.|.-..|+.++++-....-.|+. ..
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 344678999999999999999999999999998653 34557999999999999999999999876544333443 34
Q ss_pred HHhHHHhhh-cCCChHHHHHHHHHHHHhC--C--CccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHH
Q 003439 247 VASILPVCA-RSDNILSGLLIHLYIVKHG--L--EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 321 (820)
Q Consensus 247 ~~~ll~a~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~ 321 (820)
+-..-+.|. +.+..++|..+-..++... . ......+-.+.-+|...-. ...++. -
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~--------------~a~~~s------e 455 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR--------------QANLKS------E 455 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh--------------cCCChH------H
Confidence 444445554 4567777777766666521 1 1112222223223322100 000000 0
Q ss_pred hCCChhhHHHHHHHHHHcC-CCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHH
Q 003439 322 QSNDPITAHGFFTTMQQAG-IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 400 (820)
Q Consensus 322 ~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A 400 (820)
+.....++++.+++..+.+ -.|+..-|.++ -++..++++.|.+...+..+.+ -..+...+--|.-.+.-.+++.+|
T Consensus 456 R~~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~-~~~~~~~whLLALvlSa~kr~~~A 532 (799)
T KOG4162|consen 456 RDALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALN-RGDSAKAWHLLALVLSAQKRLKEA 532 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHhhhhhhHHH
Confidence 0001223444444443322 22222222222 2233445555555555555543 344455555555555555555555
Q ss_pred HHHHhcCCCC---CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHH-
Q 003439 401 CAVFEGLPVK---DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK- 476 (820)
Q Consensus 401 ~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~- 476 (820)
+.+.+...+. |-+.-..-|..-..-++.++|+.....+...-. +...+ ...++-....+....+.-
T Consensus 533 l~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we---~~~~~-------q~~~~~g~~~~lk~~l~la 602 (799)
T KOG4162|consen 533 LDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWE---AEYGV-------QQTLDEGKLLRLKAGLHLA 602 (799)
T ss_pred HHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHH---hhhhH-------hhhhhhhhhhhhhcccccC
Confidence 5554432211 111001111111224555555555555433000 00000 000000000000000000
Q ss_pred -hCCCCchhHHHHHHHHHHh---cCCHHHHHHHHhhCCCCCc------cccchHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003439 477 -NCLCFDVFVATCLVDMYGK---CGRIDDAMSLFYQVPRSSS------VPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 546 (820)
Q Consensus 477 -~g~~~~~~~~~~li~~y~~---~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 546 (820)
......+.++..+...... .-..+.....+...+.++. ..|......+...++.++|..-+.+... +.
T Consensus 603 ~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~ 680 (799)
T KOG4162|consen 603 LSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--ID 680 (799)
T ss_pred cccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cc
Confidence 0001111222222221111 1111111111111112221 1266667778888888888877777766 45
Q ss_pred CC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHHcCCHHHHHH--HHHhC-CCCCC-HHHH
Q 003439 547 PD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHN--FIQNM-PVRPD-ASIW 620 (820)
Q Consensus 547 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~--~~~~m-~~~p~-~~~~ 620 (820)
|- ...|......+...|.+++|.+.|.... -+.|+ +....++..+|.+.|+..-|.. ++..+ .+.|+ ...|
T Consensus 681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW 757 (799)
T KOG4162|consen 681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAW 757 (799)
T ss_pred hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHH
Confidence 53 3456666667788899999999987765 56775 5677888999999997666666 77776 56664 5699
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 003439 621 GALLGACRIHGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 621 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
-.|.....+.|+.+.|-+.|+-++++++.+|.
T Consensus 758 ~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 758 YYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999999999999987764
No 82
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=6.7e-05 Score=74.50 Aligned_cols=210 Identities=11% Similarity=0.064 Sum_probs=133.8
Q ss_pred ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCC-------hHHHHH
Q 003439 463 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ-------GDKALN 535 (820)
Q Consensus 463 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~ 535 (820)
.-+.|.+++--+.+. .|.. --.|+--|.+.+++++|..+.+++.+..+.-|-.-...++..|+ ..-|.+
T Consensus 269 ngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqq 344 (557)
T KOG3785|consen 269 NGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQ 344 (557)
T ss_pred CCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 345666665544442 2222 22355568899999999999988875444333322233444443 344555
Q ss_pred HHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC--
Q 003439 536 FFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP-- 612 (820)
Q Consensus 536 l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~-- 612 (820)
.|+-.-+.+..-|.+ --.++.+++.-..++++.+-++.++.. |=..-|...+ .+..+++..|.+.+|+++|-...
T Consensus 345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh
Confidence 555444455444443 334455566666788999999988874 3333444444 47889999999999999998773
Q ss_pred CCCCHHHHHHHHHHH-HhcCChhHHHHHHHHHhccCCC-CcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 613 VRPDASIWGALLGAC-RIHGNMELGAVASDRLFEVDSE-NVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 613 ~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.-.|..+|.+++.-| .+++..+.|..++-+.- .|. .......+++.+.+++.+=-|.+.|+.+...
T Consensus 423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 423 EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN--TPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 114677888777665 56678888877654321 122 2334456789999999999999999887654
No 83
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.72 E-value=2.5e-05 Score=86.00 Aligned_cols=251 Identities=16% Similarity=0.151 Sum_probs=146.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcc-cHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 003439 416 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQG-TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 494 (820)
Q Consensus 416 ~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 494 (820)
.-+...|-..|++++|+++.++..+ ..|+.+ .|..-...+-+.|++.+|.+..+.+.+... .|..+-+-.+..+.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHH
Confidence 3445567778888888888888777 556543 455556667888888888888888877653 36677777788888
Q ss_pred hcCCHHHHHHHHhhCCCCCccc----------c--chHHHHHHhcCChHHHHHHHHHHHHc--CCCCCh-----------
Q 003439 495 KCGRIDDAMSLFYQVPRSSSVP----------W--NAIISCHGIHGQGDKALNFFRQMLDE--GVRPDH----------- 549 (820)
Q Consensus 495 ~~g~~~~A~~~~~~~~~~~~~~----------~--~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~----------- 549 (820)
++|++++|.+++....+.+..+ | .....+|.+.|++..|++-|....+. .+.-|.
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~ 353 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKM 353 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhc
Confidence 9999999999888887666433 3 23456788889998888877766542 122222
Q ss_pred --hHHHHHHHHHHhcC-------CHHHHHHHHHHhHHhhCCCCCh-----------hHHHHHHHHH---HHcCCHHHHHH
Q 003439 550 --ITFVSLLTACSHSG-------LVSEGQRYFHMMQEEFGIKPHL-----------KHYGCMVDLF---GRAGHLGMAHN 606 (820)
Q Consensus 550 --~t~~~ll~a~~~~g-------~~~~a~~~~~~m~~~~g~~p~~-----------~~~~~li~~~---~~~g~~~eA~~ 606 (820)
.+|..++.-.-+.. -...|.+++-.+.......... .--..+-.-- .+...-+++..
T Consensus 354 t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~ 433 (517)
T PF12569_consen 354 TLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEK 433 (517)
T ss_pred cHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 22333333221111 0123444443333221000000 0000000000 01111111111
Q ss_pred HHH-----------hC----C--CCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcc
Q 003439 607 FIQ-----------NM----P--VRPDASIWGALLGACRIH-GNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWE 668 (820)
Q Consensus 607 ~~~-----------~m----~--~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 668 (820)
.-. +. + ..||+. ..-+... .=+++|.+.++-+.+..|++..+|.+--.+|.+.|++-
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~-----GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~L 508 (517)
T PF12569_consen 434 AAKKEPKKQQNKSKKKEKVEPKKKDDDPL-----GEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYL 508 (517)
T ss_pred HHhhhhhhhhccccccccccCCcCCCCcc-----HHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHH
Confidence 110 00 1 112221 1112222 34688999999999999999999999999999999998
Q ss_pred hHHHHHH
Q 003439 669 GVDEVRS 675 (820)
Q Consensus 669 ~A~~~~~ 675 (820)
-|.+...
T Consensus 509 LaLqaL~ 515 (517)
T PF12569_consen 509 LALQALK 515 (517)
T ss_pred HHHHHHH
Confidence 7776654
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.72 E-value=2.5e-05 Score=83.83 Aligned_cols=216 Identities=13% Similarity=0.120 Sum_probs=117.2
Q ss_pred cCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCC---CCchHHHHHHHHHHhCCChhhHHHH
Q 003439 256 RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGF 332 (820)
Q Consensus 256 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~ 332 (820)
..+++..+....+.+++ +.+.-..+....--.+...|+-++|......-.. ++.+.|..+.-.+-...++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 34555566666666655 2222222332222334566888888888776655 4567899988888888999999999
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcC---CC
Q 003439 333 FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL---PV 409 (820)
Q Consensus 333 ~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~---~~ 409 (820)
|+..... .||.. .++.-|.-.-++.|+++......... ..
T Consensus 98 y~nAl~~--~~dN~-----------------------------------qilrDlslLQ~QmRd~~~~~~tr~~LLql~~ 140 (700)
T KOG1156|consen 98 YRNALKI--EKDNL-----------------------------------QILRDLSLLQIQMRDYEGYLETRNQLLQLRP 140 (700)
T ss_pred HHHHHhc--CCCcH-----------------------------------HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 9988764 34332 22222222222222222222221111 12
Q ss_pred CCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHH------HHhhccCChhHHHHHHHHHHHhCCCCch
Q 003439 410 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL------PAYSHVGALRQGIKIHARVIKNCLCFDV 483 (820)
Q Consensus 410 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll------~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 483 (820)
.....|..+..++.-.|++..|..++++..+...-.|+...|.-.. ......|.++.|.+.+..-... +....
T Consensus 141 ~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkl 219 (700)
T KOG1156|consen 141 SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKL 219 (700)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHH
Confidence 2345677777777777777777777777666222234544443222 1234455555555554433221 11122
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 003439 484 FVATCLVDMYGKCGRIDDAMSLFYQVP 510 (820)
Q Consensus 484 ~~~~~li~~y~~~g~~~~A~~~~~~~~ 510 (820)
..-..-.+.+.+.+++++|..++..+.
T Consensus 220 a~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 220 AFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 223344556677777777777777666
No 85
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.70 E-value=7.1e-06 Score=90.29 Aligned_cols=280 Identities=13% Similarity=0.148 Sum_probs=177.5
Q ss_pred HHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCH
Q 003439 318 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 397 (820)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~ 397 (820)
..+...|++++|++.+.+-... .+| ...+.......|.+.|+.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~D-----------------------------------k~~~~E~rA~ll~kLg~~ 54 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILD-----------------------------------KLAVLEKRAELLLKLGRK 54 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCC-----------------------------------HHHHHHHHHHHHHHcCCH
Confidence 4456778888888888764332 223 333444555566666666
Q ss_pred HHHHHHHhcCCCCC--ch-HHHHHHHHHHHc-----CChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCC-hhHHH
Q 003439 398 NSACAVFEGLPVKD--VI-SWNTLITGYAQN-----GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA-LRQGI 468 (820)
Q Consensus 398 ~~A~~~f~~~~~~~--~~-~~~~li~~~~~~-----g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~-~~~a~ 468 (820)
++|..++..+..+| -. -|..+..+.... ...+...++|+++.. .-|.......+.-.+..... -..+.
T Consensus 55 ~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~---~yp~s~~~~rl~L~~~~g~~F~~~~~ 131 (517)
T PF12569_consen 55 EEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAE---KYPRSDAPRRLPLDFLEGDEFKERLD 131 (517)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHH---hCccccchhHhhcccCCHHHHHHHHH
Confidence 66666666655332 22 233333333211 245667778887765 33544444333222222122 23445
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC------------------CCCcccc--chHHHHHHhcC
Q 003439 469 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP------------------RSSSVPW--NAIISCHGIHG 528 (820)
Q Consensus 469 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~------------------~~~~~~~--~~li~~~~~~g 528 (820)
.+....++.|++ .+++.|-..|....+.+-..+++.... .|....| .-+...|...|
T Consensus 132 ~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g 208 (517)
T PF12569_consen 132 EYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG 208 (517)
T ss_pred HHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC
Confidence 566667777764 356667777776555555555554432 1112224 44567788999
Q ss_pred ChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHH
Q 003439 529 QGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHN 606 (820)
Q Consensus 529 ~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~ 606 (820)
++++|+++.++.++ ..|..+ .|..-...+-+.|++++|.+..+... .+.+ |...-+--+..+.|+|++++|.+
T Consensus 209 ~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar---~LD~~DRyiNsK~aKy~LRa~~~e~A~~ 283 (517)
T PF12569_consen 209 DYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEAR---ELDLADRYINSKCAKYLLRAGRIEEAEK 283 (517)
T ss_pred CHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hCChhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999 578754 77788889999999999999998876 3444 55666667788899999999999
Q ss_pred HHHhCCC---CC--C----HHHHH--HHHHHHHhcCChhHHHHHHHHHhc
Q 003439 607 FIQNMPV---RP--D----ASIWG--ALLGACRIHGNMELGAVASDRLFE 645 (820)
Q Consensus 607 ~~~~m~~---~p--~----~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~ 645 (820)
++..... .| | ...|- -...+|.+.|++..|.+.|..+.+
T Consensus 284 ~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 284 TASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9877631 22 1 12442 345678899999999998887654
No 86
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.69 E-value=0.00033 Score=85.90 Aligned_cols=194 Identities=13% Similarity=0.127 Sum_probs=105.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC-------CC----ccccchHHHHHHhcCChHHHHHHHHHHHHcC--CCCC--hhH
Q 003439 487 TCLVDMYGKCGRIDDAMSLFYQVPR-------SS----SVPWNAIISCHGIHGQGDKALNFFRQMLDEG--VRPD--HIT 551 (820)
Q Consensus 487 ~~li~~y~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~--~~t 551 (820)
..+...+...|++++|...+++... .+ ...+..+...+...|++++|...+++..... ..|. ..+
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 3444455555666666555544320 00 0112233344555577777777766655421 1121 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHH-----HHHHHHHHHcCCHHHHHHHHHhCCCC--CCH----HHH
Q 003439 552 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY-----GCMVDLFGRAGHLGMAHNFIQNMPVR--PDA----SIW 620 (820)
Q Consensus 552 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~-----~~li~~~~~~g~~~eA~~~~~~m~~~--p~~----~~~ 620 (820)
+..+.......|+.++|.+.+........-......+ ......+...|+.++|.+.+...... ... ..+
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 4444556667788888877777664321111110111 11123445577888888887665211 111 123
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCC------CCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 621 GALLGACRIHGNMELGAVASDRLFEVDS------ENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 621 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
..+..++...|+.++|...++++++... .....+..++.+|...|+.++|...+.++.+.
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555667777888888888887766421 12235567778888888888888888877764
No 87
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=3.6e-07 Score=89.28 Aligned_cols=222 Identities=16% Similarity=0.142 Sum_probs=172.2
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhcCC--CCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHh-hHHHHhhc
Q 003439 384 GNAVVDMYAKLGIINSACAVFEGLP--VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV-SILPAYSH 460 (820)
Q Consensus 384 ~~~li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~-~ll~a~~~ 460 (820)
-+.+...|.+.|.+.+|.+.|+.-. .+-+.||-.|-..|.+..+++.|+.+|.+-.+ ..|..+||. .+...+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld---~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD---SFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh---cCCchhhhhhhhHHHHHH
Confidence 3667788999999999999888654 34677888888999999999999999988776 678777774 45667788
Q ss_pred cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCccccchHHHHHHhcCChHHHHHHH
Q 003439 461 VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR---SSSVPWNAIISCHGIHGQGDKALNFF 537 (820)
Q Consensus 461 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 537 (820)
.++.+.+.++++.+.+.. ..++....++...|.-.++.|-|...+.++.+ .+...|+.+.-+|.-.++++-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 889999999999988864 34566666777778888999999999988774 44455888888888999999999999
Q ss_pred HHHHHcCCCCChh--HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 003439 538 RQMLDEGVRPDHI--TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 611 (820)
Q Consensus 538 ~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m 611 (820)
++.+..--.|+.. .|..|.......|++.-|.+.|+.... .-..+.+.++.|.-+-.|.|++++|..+++..
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9988865566653 566677777778888888888876653 22234566777777777778888888777766
No 88
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.69 E-value=4.9e-05 Score=81.98 Aligned_cols=259 Identities=14% Similarity=0.180 Sum_probs=161.7
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCchH--HHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHH
Q 003439 390 MYAKLGIINSACAVFEGLPVKDVIS--WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 467 (820)
Q Consensus 390 ~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a 467 (820)
+-.....+.+|..+++.+..+++.+ |..+..-|+..|+++.|.++|.+.-. +.-.|..|.+.|.++.|
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~----------~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADL----------FKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcch----------hHHHHHHHhccccHHHH
Confidence 3344556666666666665554432 45555666666777777666654322 33455666677777666
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003439 468 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 547 (820)
Q Consensus 468 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 547 (820)
.++-.+. .|.+..+..|-+-..-+-+.|++.+|++++-.+..|+. -|..|-++|..++.+++..+- .|
T Consensus 811 ~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~ 878 (1636)
T KOG3616|consen 811 FKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HG 878 (1636)
T ss_pred HHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----Ch
Confidence 6554332 23344555565656666778888888888877777664 467788888888888776653 44
Q ss_pred Ch--hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCC---C-CHHHHH
Q 003439 548 DH--ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR---P-DASIWG 621 (820)
Q Consensus 548 ~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~---p-~~~~~~ 621 (820)
+. .|-..+..-+...|++..|.+.|-+.. -|.+-+++|-..+.+++|..+-+.-+-. . -...|.
T Consensus 879 d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwa 948 (1636)
T KOG3616|consen 879 DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWA 948 (1636)
T ss_pred hhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHH
Confidence 43 466667777888888888888765443 3556677888888888888877654211 1 122343
Q ss_pred HHH------HHHHhcCChhHHHHHH------HHHhc-----cCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 622 ALL------GACRIHGNMELGAVAS------DRLFE-----VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 622 ~ll------~~~~~~g~~~~a~~~~------~~~~~-----~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
--+ ..+.+||-++.|+... +-+++ ..-.-++.++.++..+...|++++|.+.+-+..+.
T Consensus 949 ksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 949 KSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred HhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 222 2345666666665532 22222 22334667778888889999999998877766654
No 89
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.67 E-value=5.8e-07 Score=94.92 Aligned_cols=217 Identities=13% Similarity=0.072 Sum_probs=150.9
Q ss_pred cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHH
Q 003439 461 VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFF 537 (820)
Q Consensus 461 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 537 (820)
.|++.+|.-.|+..++... -+...|--|...-+..++=..|+..+.+.. +.|....-+|...|...|.-.+|++.+
T Consensus 298 nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred cCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 3444444444444444331 234445445555555555555555555544 334444555666777777777777777
Q ss_pred HHHHHcCCC--------CChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 003439 538 RQMLDEGVR--------PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 609 (820)
Q Consensus 538 ~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~ 609 (820)
+.-+....+ ++..+-.. ..+.+........++|-.+....+..+|+.++.+|.-+|--.|.+++|.+.|+
T Consensus 377 ~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~ 454 (579)
T KOG1125|consen 377 DKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFE 454 (579)
T ss_pred HHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHH
Confidence 776553210 01000000 12223334556667777777776777888999999999999999999999999
Q ss_pred hC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 610 NM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 610 ~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.+ ..+|+ ..+||-|...++...+.++|+.+|.+++++.|.-..+...|+-.|...|.++||.+.+-.+...
T Consensus 455 ~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 455 AALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 87 67775 5599999999999999999999999999999999999999999999999999999988777654
No 90
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.67 E-value=0.00021 Score=76.91 Aligned_cols=409 Identities=14% Similarity=0.129 Sum_probs=244.3
Q ss_pred hhcCCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHH
Q 003439 188 YCRFGLANVARKLFDDMPV---RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGL 264 (820)
Q Consensus 188 y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 264 (820)
+...|+.++|......-.. ++.++|..+--.+-...++++|+..|+.....+ ||
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~d--------------------- 107 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--KD--------------------- 107 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CC---------------------
Confidence 3445788888777665543 456789888877878888999999998877643 22
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCC---CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcC-
Q 003439 265 LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG- 340 (820)
Q Consensus 265 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 340 (820)
|...+.-|.-.-++.|+++.....-....+ .....|..++.++.-.|+...|..++++..+..
T Consensus 108 -------------N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 108 -------------NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred -------------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 222333332223333444333333332222 345678888888888899999999888887654
Q ss_pred CCCCcchHHHHHHH------HHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCC--Cc
Q 003439 341 IQPDLLTLVSLTSI------VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK--DV 412 (820)
Q Consensus 341 ~~pd~~t~~~ll~a------~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~ 412 (820)
-.|+...|.....- ....|.++.+.+......+. +.......-.-.+.+.+.+++++|..++..+..+ |.
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn 252 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDN 252 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchh
Confidence 35666666544332 33455556555554443222 2333344455677889999999999999988754 44
Q ss_pred hHHHH-HHHHHHHcCChHHHH-HHHHhhhhcCCCCCCccc-HhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHH
Q 003439 413 ISWNT-LITGYAQNGLASEAI-EVFQMMEECNEINPNQGT-YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 489 (820)
Q Consensus 413 ~~~~~-li~~~~~~g~~~~A~-~l~~~m~~~~g~~pd~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l 489 (820)
+.|.. +..++.+--+.-+++ .+|....+ ..|-... -..=++......-.+....++....+.|+++ ++..+
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~---~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl 326 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSE---KYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDL 326 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhh---cCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhh
Confidence 44444 344443344444555 66666544 2221111 1111122222233344455566667777654 34444
Q ss_pred HHHHHhcCCHHH----HHHHHhhCC--------------CCCccccch--HHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 003439 490 VDMYGKCGRIDD----AMSLFYQVP--------------RSSSVPWNA--IISCHGIHGQGDKALNFFRQMLDEGVRPDH 549 (820)
Q Consensus 490 i~~y~~~g~~~~----A~~~~~~~~--------------~~~~~~~~~--li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 549 (820)
...|-.-...+- +..+...+. +|....|.. ++..|-..|+++.|..+.+..++ -.|..
T Consensus 327 ~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTl 404 (700)
T KOG1156|consen 327 RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTL 404 (700)
T ss_pred HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchH
Confidence 444432221111 112222221 222233554 66778889999999999999988 46776
Q ss_pred h-HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-C--------HHH
Q 003439 550 I-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP-D--------ASI 619 (820)
Q Consensus 550 ~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p-~--------~~~ 619 (820)
+ -|..=...+.+.|++++|..++++..+ --.||...-+--+.-..|+.+.++|.++.....-+- + .-.
T Consensus 405 iEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcm 482 (700)
T KOG1156|consen 405 IELYLVKARIFKHAGLLDEAAAWLDEAQE--LDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCM 482 (700)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhH
Confidence 5 565667889999999999999998773 224555544455667789999999999877663111 1 124
Q ss_pred HHHHH--HHHHhcCChhHHHHHHHHHh
Q 003439 620 WGALL--GACRIHGNMELGAVASDRLF 644 (820)
Q Consensus 620 ~~~ll--~~~~~~g~~~~a~~~~~~~~ 644 (820)
|-.+- .+|.+.|++.+|.+-|..+.
T Consensus 483 Wf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 483 WFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 44433 35778888888877666543
No 91
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=0.0007 Score=74.53 Aligned_cols=268 Identities=15% Similarity=0.160 Sum_probs=164.3
Q ss_pred CChhhhHHHHH--HHHccCChHHHHHHhcccCCCCcchHHHHHHHHHhCCCchHHHHHHHHHhhhCCCCCCccccHHHHH
Q 003439 77 KTVFSSTKLVN--FYANLGDLSFSRHTFDHISYRNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLK 154 (820)
Q Consensus 77 ~~~~~~~~ll~--~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~t~~~ll~ 154 (820)
-|..+-..+++ .|.--|+.+.|.+-...+. +...|..|.+.+++..+.+-|.-.+-. |...
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGh-m~~a-------------- 786 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGH-MKNA-------------- 786 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhh-hhhh--------------
Confidence 35556666665 4777788888877666554 445699999999999988888766665 4211
Q ss_pred hhcCCcchHHHHHHHHHhCCCCcHHHHHHHHHHhhcCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHH
Q 003439 155 ACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDE 234 (820)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 234 (820)
.+.+...+..+.|-... ....-.-...|.+++|..++.+-.+ |..|=..|-..|++++|+++-+.
T Consensus 787 ------RgaRAlR~a~q~~~e~e----akvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~ 851 (1416)
T KOG3617|consen 787 ------RGARALRRAQQNGEEDE----AKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAET 851 (1416)
T ss_pred ------hhHHHHHHHHhCCcchh----hHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhh
Confidence 01122223333332111 1111122346888999999877553 44555677788999999988654
Q ss_pred HHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHH
Q 003439 235 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 314 (820)
Q Consensus 235 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~ 314 (820)
=-+.- =..||..-..-+...++.+.|.+.|+.. |. +--.+...|. .++..-+++.+.+.++.. |.
T Consensus 852 ~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~---~~-hafev~rmL~------e~p~~~e~Yv~~~~d~~L--~~ 916 (1416)
T KOG3617|consen 852 KDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKA---GV-HAFEVFRMLK------EYPKQIEQYVRRKRDESL--YS 916 (1416)
T ss_pred cccee---hhhhHHHHHHHHHhhccHHHHHHHHHhc---CC-hHHHHHHHHH------hChHHHHHHHHhccchHH--HH
Confidence 32221 1245655566666677888888877653 21 1111222111 223344445555554433 33
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhc
Q 003439 315 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL 394 (820)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~ 394 (820)
-...-+-..|+.+.|+.+|...++ |-++++..+-.|+.++|-+|-.. ..|....-.|.++|-..
T Consensus 917 WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e-------sgd~AAcYhlaR~YEn~ 980 (1416)
T KOG3617|consen 917 WWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE-------SGDKAACYHLARMYEND 980 (1416)
T ss_pred HHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh-------cccHHHHHHHHHHhhhh
Confidence 344445557888999988887754 45566666667888877776543 34666677788888888
Q ss_pred CCHHHHHHHHhcC
Q 003439 395 GIINSACAVFEGL 407 (820)
Q Consensus 395 g~~~~A~~~f~~~ 407 (820)
|++.+|...|.+.
T Consensus 981 g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 981 GDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHHHHH
Confidence 9998888888654
No 92
>PF12854 PPR_1: PPR repeat
Probab=98.59 E-value=5.1e-08 Score=63.50 Aligned_cols=34 Identities=38% Similarity=0.590 Sum_probs=29.4
Q ss_pred hCCCCcHHHHHHHHHHhhcCCChhHHHHHhccCC
Q 003439 172 LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 205 (820)
Q Consensus 172 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 205 (820)
.|+.||.++||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3778888999999999999999999999998885
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.57 E-value=1.7e-06 Score=88.72 Aligned_cols=148 Identities=12% Similarity=0.046 Sum_probs=93.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhH---HHHHHHHHHHcCC
Q 003439 524 HGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH---YGCMVDLFGRAGH 600 (820)
Q Consensus 524 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~---~~~li~~~~~~g~ 600 (820)
+...|++++|++++++- .+.......+..+.+.++++.|.+.++.|. .+..|... ..+.+..+.-.+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ---QIDEDSILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH---CCSCCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHhCchh
Confidence 33445555555555421 233444455666666777777777776665 33444321 1222333322346
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCc-chHHHHHHHH
Q 003439 601 LGMAHNFIQNM--PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKW-EGVDEVRSLA 677 (820)
Q Consensus 601 ~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~-~~A~~~~~~m 677 (820)
+.+|.-+|+++ ...+++.+.+.+..++...|++++|+..++++++.+|+++.+...++-+....|+. +.+.+++.++
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 77888888877 33467778888888888899999999999999999998888888888888888888 4566777776
Q ss_pred HhC
Q 003439 678 RDR 680 (820)
Q Consensus 678 ~~~ 680 (820)
+..
T Consensus 263 ~~~ 265 (290)
T PF04733_consen 263 KQS 265 (290)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.56 E-value=0.0001 Score=72.96 Aligned_cols=308 Identities=16% Similarity=0.175 Sum_probs=156.5
Q ss_pred HHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHH---HHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC
Q 003439 283 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII---AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 359 (820)
Q Consensus 283 ~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~ 359 (820)
--|-..+...|++.+|+.-|....+-|+..|.++- ..|...|+...|+.=+.+..+ ++||...-
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~A----------- 108 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAA----------- 108 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHH-----------
Confidence 33455566678888888888888887777777654 467777777777777776655 34542211
Q ss_pred cchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhh
Q 003439 360 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 439 (820)
Q Consensus 360 ~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 439 (820)
-+++ ...+.|.|.++.|..-|+.+...+.. -+....++.+.-..++-..
T Consensus 109 -----------RiQR-------------g~vllK~Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~~~~e~~~------ 157 (504)
T KOG0624|consen 109 -----------RIQR-------------GVVLLKQGELEQAEADFDQVLQHEPS-NGLVLEAQSKLALIQEHWV------ 157 (504)
T ss_pred -----------HHHh-------------chhhhhcccHHHHHHHHHHHHhcCCC-cchhHHHHHHHHhHHHHHH------
Confidence 0111 12345667777777666665433211 0001111111111111111
Q ss_pred hcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhC---CCCCccc
Q 003439 440 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV---PRSSSVP 516 (820)
Q Consensus 440 ~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~ 516 (820)
....+..+...|+...+......+++.. +.|...+..-..+|...|++..|+.-+... ...+...
T Consensus 158 -----------l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~ 225 (504)
T KOG0624|consen 158 -----------LVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEG 225 (504)
T ss_pred -----------HHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHH
Confidence 1122223344555555555555555532 235555666666677777777666544433 2444444
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH-HH---HH---------HHHHHhcCCHHHHHHHHHHhHHhhCCCC
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHIT-FV---SL---------LTACSHSGLVSEGQRYFHMMQEEFGIKP 583 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~---~l---------l~a~~~~g~~~~a~~~~~~m~~~~g~~p 583 (820)
.--+-..+.+.|+.+.++...++.++ +.||.-. |. .| +......+.|.++.+..+...+ ..|
T Consensus 226 ~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep 300 (504)
T KOG0624|consen 226 HYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEP 300 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCC
Confidence 55555666677777777777777777 5677642 11 11 0011223444444444444332 122
Q ss_pred Ch-----hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 003439 584 HL-----KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 651 (820)
Q Consensus 584 ~~-----~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 651 (820)
.. ..+..+-..|...|++.+|++.-.+. .+.|| +.++---..+|.....++.|+.-|+++.+.+|+|.
T Consensus 301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred cccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 21 12222333444555555555554443 34444 33544445555555555566666666655555543
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.55 E-value=3e-05 Score=83.69 Aligned_cols=294 Identities=12% Similarity=-0.025 Sum_probs=171.2
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhcCC---CCCchH---HHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcc-cHhhH
Q 003439 382 IIGNAVVDMYAKLGIINSACAVFEGLP---VKDVIS---WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG-TYVSI 454 (820)
Q Consensus 382 ~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t~~~l 454 (820)
..+..+...|...|+.+.+.+.+.... ..+... .......+...|++++|.+.+++..+ ..|+.. .+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~---~~P~~~~a~~~- 82 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLD---DYPRDLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHH-
Confidence 344445555555566666544444322 112111 22223445677889999999888876 345443 2221
Q ss_pred HHHhh----ccCChhHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHh
Q 003439 455 LPAYS----HVGALRQGIKIHARVIKNCLCFD-VFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGI 526 (820)
Q Consensus 455 l~a~~----~~~~~~~a~~i~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 526 (820)
...+. ..+..+.+.+.+.. .....|+ ......+...+...|++++|.+.+++.. +.+...+..+...|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 11222 23444444444433 1112232 3344456677888999999999998776 4445567778888899
Q ss_pred cCChHHHHHHHHHHHHcCC-CCCh--hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHH-H--HHHHHHHHcCC
Q 003439 527 HGQGDKALNFFRQMLDEGV-RPDH--ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY-G--CMVDLFGRAGH 600 (820)
Q Consensus 527 ~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~-~--~li~~~~~~g~ 600 (820)
.|++++|+..+++...... .|+. ..|..+...+...|++++|..+++.........+..... + .+...+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 9999999999998887421 1222 235567778889999999999998875321111111111 1 22333344443
Q ss_pred HHHHHHH---HHhC-CCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC---------CCcchHHhHHHHhhhc
Q 003439 601 LGMAHNF---IQNM-PVRPD---ASIWGALLGACRIHGNMELGAVASDRLFEVDS---------ENVGYYVLMSNIYANV 664 (820)
Q Consensus 601 ~~eA~~~---~~~m-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~y~~~ 664 (820)
.+.+.+. .... +..|. .........++...|+.+.|...++.+....- .........+.++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 3322222 1111 11011 12223456667788999999999887755221 1244556778889999
Q ss_pred CCcchHHHHHHHHHhCC
Q 003439 665 GKWEGVDEVRSLARDRG 681 (820)
Q Consensus 665 g~~~~A~~~~~~m~~~~ 681 (820)
|++++|.+.+......+
T Consensus 321 g~~~~A~~~L~~al~~a 337 (355)
T cd05804 321 GNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999988887653
No 96
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=2.9e-05 Score=81.76 Aligned_cols=214 Identities=12% Similarity=0.109 Sum_probs=139.1
Q ss_pred hHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc---cc-------hHHH
Q 003439 453 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP---WN-------AIIS 522 (820)
Q Consensus 453 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~---~~-------~li~ 522 (820)
.+.++..+..+++.+.+-+...+... .++.-++....+|...|...+....-+...+.+... |+ .+..
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 34455555666667777666666654 455555666667777776666655554433222211 22 2333
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChh-HHHHHHHHHHHcCCH
Q 003439 523 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK-HYGCMVDLFGRAGHL 601 (820)
Q Consensus 523 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~-~~~~li~~~~~~g~~ 601 (820)
+|.+.++++.|+..|++.+..-..||..+ +....+++....+... -+.|... -.-.=..-+.+.|++
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCH
Confidence 55566777778877777666544443321 2222333333333222 2333321 111125567788999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 602 GMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 602 ~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
.+|...+.++ ...| |...|..-..+|.+.|++..|+.-.+..++++|+....|..=+-++....+|++|.+.+++..+
T Consensus 375 ~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999887 4445 5668888888899999999999999999999999999999989999999999999999988776
Q ss_pred C
Q 003439 680 R 680 (820)
Q Consensus 680 ~ 680 (820)
.
T Consensus 455 ~ 455 (539)
T KOG0548|consen 455 L 455 (539)
T ss_pred c
Confidence 5
No 97
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.54 E-value=0.00026 Score=79.70 Aligned_cols=491 Identities=12% Similarity=0.086 Sum_probs=264.6
Q ss_pred hHHHHHHHHHhCCCCc-HHHHHHHHHHhhcCCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 003439 162 GKKIHCSVLKLGFEWD-VFVAASLLHMYCRFGLANVARKLFDDMPV---RDSGSWNAMISGYCQSGNAVEALDILDEMRL 237 (820)
Q Consensus 162 ~~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 237 (820)
+..++..+...-+.++ ...|..|-..|+...+...|.+.|+..-+ .|..+|-.....|++..++++|..+.-.--+
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 4455555555555555 45788888889888888999999987653 4677899999999999999999998333222
Q ss_pred CC-CCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHH-
Q 003439 238 EG-VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS- 315 (820)
Q Consensus 238 ~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~- 315 (820)
.. ...-..-|...--.+-..++...+..-++...+.. +-|...|..|..+|.++|++..|.++|.+...-++.+|-.
T Consensus 555 ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 555 KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 11 00111122223334456677777777777777654 4478889999999999999999999998776644433322
Q ss_pred --HHHHHHhCCChhhHHHHHHHHHHc------CCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHH-------hCCcCcc
Q 003439 316 --IIAAYEQSNDPITAHGFFTTMQQA------GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR-------RGWFMED 380 (820)
Q Consensus 316 --li~~~~~~g~~~~A~~~~~~m~~~------g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-------~g~~~~~ 380 (820)
....-+..|.+.+|++.+...... +..--..++..+...+...|-...+..+++..++ .. ...+
T Consensus 634 fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~-~~~~ 712 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS-LQSD 712 (1238)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh-hhhh
Confidence 223345678899999888776532 1111222333333333333333333333332222 11 1111
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCch--HHHHHHHH-HHHcCCh---H---HHHHHHHhhhhcCCCCCCcccH
Q 003439 381 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI--SWNTLITG-YAQNGLA---S---EAIEVFQMMEECNEINPNQGTY 451 (820)
Q Consensus 381 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~--~~~~li~~-~~~~g~~---~---~A~~l~~~m~~~~g~~pd~~t~ 451 (820)
...|-. ..+|..+|-... +|.+ .+..++.. +-..+.. + -+.+.+-.-.+ ...+..++
T Consensus 713 ~~~Wi~----------asdac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls---l~~~~~~W 778 (1238)
T KOG1127|consen 713 RLQWIV----------ASDACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS---LAIHMYPW 778 (1238)
T ss_pred HHHHHH----------HhHHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH---HhhccchH
Confidence 111111 123444444443 3311 11111111 1111111 1 01111111111 12223343
Q ss_pred hhHHHHhhc----cCC----hhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchH
Q 003439 452 VSILPAYSH----VGA----LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAI 520 (820)
Q Consensus 452 ~~ll~a~~~----~~~----~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~l 520 (820)
..+...+.+ .+. ...|...+...++.. ..+...+|+|.-. +..|++.-|..-|-+-. +....+|..+
T Consensus 779 yNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~Nl 856 (1238)
T KOG1127|consen 779 YNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNL 856 (1238)
T ss_pred HHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheecc
Confidence 333322221 111 123333333333321 1234455555443 55677777776665433 5566778888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhH---HhhCCCCChhHHHHHHHHHH
Q 003439 521 ISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQ---EEFGIKPHLKHYGCMVDLFG 596 (820)
Q Consensus 521 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~g~~p~~~~~~~li~~~~ 596 (820)
...+.++.+++-|...|...+. +.| |...|....-.-...|+.-+...+|..-. ...|--|+..-+-|-...-.
T Consensus 857 gvL~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~ 934 (1238)
T KOG1127|consen 857 GVLVLENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHL 934 (1238)
T ss_pred ceeEEecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHH
Confidence 8888888888888888888777 556 44566665555566777777777765411 11133344433444444444
Q ss_pred HcCCHHHHHHHHHhCC-----------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc---CC---CCcchHHhHH
Q 003439 597 RAGHLGMAHNFIQNMP-----------VRPD-ASIWGALLGACRIHGNMELGAVASDRLFEV---DS---ENVGYYVLMS 658 (820)
Q Consensus 597 ~~g~~~eA~~~~~~m~-----------~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p---~~~~~~~~l~ 658 (820)
..|+.++-..-.++++ -.|+ ...|...+......+.++.|...+.+++.+ .- .+...--..+
T Consensus 935 ~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~g 1014 (1238)
T KOG1127|consen 935 QNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAG 1014 (1238)
T ss_pred hccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Confidence 5566655554444431 2243 346666666666667777777777665441 11 1122233456
Q ss_pred HHhhhcCCcchHHH
Q 003439 659 NIYANVGKWEGVDE 672 (820)
Q Consensus 659 ~~y~~~g~~~~A~~ 672 (820)
.++...|.++.|..
T Consensus 1015 RL~lslgefe~A~~ 1028 (1238)
T KOG1127|consen 1015 RLELSLGEFESAKK 1028 (1238)
T ss_pred hhhhhhcchhhHhh
Confidence 66777777775544
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=4.7e-05 Score=73.84 Aligned_cols=277 Identities=13% Similarity=0.093 Sum_probs=144.3
Q ss_pred CCHHHHHHHHhcCC-CCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHH
Q 003439 395 GIINSACAVFEGLP-VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 473 (820)
Q Consensus 395 g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~ 473 (820)
+++..++.+.++.+ +.+..+.+.......+.|++++|++-|+...+..|..|- ..|+..+ +..+.++.+.|.+...+
T Consensus 126 ~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl-lAYniAL-aHy~~~qyasALk~iSE 203 (459)
T KOG4340|consen 126 GDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL-LAYNLAL-AHYSSRQYASALKHISE 203 (459)
T ss_pred ccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch-hHHHHHH-HHHhhhhHHHHHHHHHH
Confidence 44444444444444 233333333333344555555555555555553444442 2333322 23344555555555555
Q ss_pred HHHhCCCCc---------------------hhHHHHHH-------HHHHhcCCHHHHHHHHhhCCC-----CCccccchH
Q 003439 474 VIKNCLCFD---------------------VFVATCLV-------DMYGKCGRIDDAMSLFYQVPR-----SSSVPWNAI 520 (820)
Q Consensus 474 ~~~~g~~~~---------------------~~~~~~li-------~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~l 520 (820)
+++.|++.. ..+-++++ ..+.+.|+.+.|.+.+-.|++ .|+++...+
T Consensus 204 IieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~ 283 (459)
T KOG4340|consen 204 IIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQ 283 (459)
T ss_pred HHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHH
Confidence 555443211 11223333 345688999999999999994 466665544
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH-Hc
Q 003439 521 ISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG-RA 598 (820)
Q Consensus 521 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~-~~ 598 (820)
.-. -..+++.+..+-++-+++ +.| ...||..++-.|++..-++-|-.++.+-....---.+...|+ |++++. -.
T Consensus 284 Al~-n~~~~p~~g~~KLqFLL~--~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~q 359 (459)
T KOG4340|consen 284 ALM-NMDARPTEGFEKLQFLLQ--QNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQ 359 (459)
T ss_pred HHh-cccCCccccHHHHHHHHh--cCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCC
Confidence 322 234566666666666666 455 346999999999999999988887753211000001223333 233333 33
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChh----HHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHH
Q 003439 599 GHLGMAHNFIQNMPVRPDASIWGALLGA-CRIHGNME----LGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEV 673 (820)
Q Consensus 599 g~~~eA~~~~~~m~~~p~~~~~~~ll~~-~~~~g~~~----~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~ 673 (820)
-..++|.+-++.+...-.......-+.. -.++.+-+ .+++-+++.+++- ......-+++|.+..++..+.+.
T Consensus 360 T~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~ 436 (459)
T KOG4340|consen 360 TAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKI 436 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHH
Confidence 4566666555443100000000011111 11222222 2334444555432 22445678899999999999999
Q ss_pred HHHHHhC
Q 003439 674 RSLARDR 680 (820)
Q Consensus 674 ~~~m~~~ 680 (820)
|+.-.+.
T Consensus 437 Fr~Svef 443 (459)
T KOG4340|consen 437 FRKSVEF 443 (459)
T ss_pred HHHHHhh
Confidence 9877664
No 99
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.49 E-value=3e-05 Score=72.97 Aligned_cols=166 Identities=14% Similarity=0.112 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHH
Q 003439 484 FVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTAC 559 (820)
Q Consensus 484 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 559 (820)
.++..+...|-+.|..+.|.+-|++.. +.+-...|....-+|..|++++|...|++....-.-|. ..||..+.-+.
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Ca 149 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCA 149 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHH
Confidence 344455555555555555555555433 33344455555555666666666666666665322222 23566666666
Q ss_pred HhcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHH
Q 003439 560 SHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNM--PVRPDASIWGALLGACRIHGNMELG 636 (820)
Q Consensus 560 ~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a 636 (820)
.+.|+.+.|.++|++..+ ..|+ ....-.|.....+.|++..|..+++.. ...++..+..-.|..-...||.+.+
T Consensus 150 l~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a 226 (250)
T COG3063 150 LKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAA 226 (250)
T ss_pred hhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHH
Confidence 666777777777766553 2332 345555666666777777777776655 2335555555555556667777777
Q ss_pred HHHHHHHhccCCCCcc
Q 003439 637 AVASDRLFEVDSENVG 652 (820)
Q Consensus 637 ~~~~~~~~~~~p~~~~ 652 (820)
-+.-.++...-|....
T Consensus 227 ~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 227 QRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHHHhCCCcHH
Confidence 7666666666665443
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.48 E-value=0.0026 Score=78.12 Aligned_cols=193 Identities=14% Similarity=0.058 Sum_probs=95.6
Q ss_pred hHHHHHHHhcCCHHHHHHHHhcCCC-------CC----chHHHHHHHHHHHcCChHHHHHHHHhhhhcC-CCCCC--ccc
Q 003439 385 NAVVDMYAKLGIINSACAVFEGLPV-------KD----VISWNTLITGYAQNGLASEAIEVFQMMEECN-EINPN--QGT 450 (820)
Q Consensus 385 ~~li~~y~~~g~~~~A~~~f~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-g~~pd--~~t 450 (820)
..+...+...|++++|...+++... ++ ...+..+...+...|++++|...+++..... ...+. ...
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 3444555566666666665543221 01 1123333444555677777777766654310 01111 112
Q ss_pred HhhHHHHhhccCChhHHHHHHHHHHHhCCCCc-hh-----HHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc-c------c
Q 003439 451 YVSILPAYSHVGALRQGIKIHARVIKNCLCFD-VF-----VATCLVDMYGKCGRIDDAMSLFYQVPRSSSV-P------W 517 (820)
Q Consensus 451 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~-~~-----~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-~------~ 517 (820)
+..+.......|+.+.|.+.+..+....-... .. .....+..+...|+.+.|.+.+.....+... . +
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 22233345566777777666665543211000 00 0011123345567777777777665532211 1 2
Q ss_pred chHHHHHHhcCChHHHHHHHHHHHHc----CCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 003439 518 NAIISCHGIHGQGDKALNFFRQMLDE----GVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQE 577 (820)
Q Consensus 518 ~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 577 (820)
..+..++...|++++|...+++.... |..++. .+...+..++...|+.++|.+.+.+..+
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455566677777777777766553 222222 2444455566667777777777666654
No 101
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.46 E-value=0.00045 Score=77.81 Aligned_cols=275 Identities=11% Similarity=0.019 Sum_probs=166.5
Q ss_pred HHHHHHHhcC---CCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCC-CcccHhhHHHHhhccCChhHHHHHHHH
Q 003439 398 NSACAVFEGL---PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIKIHAR 473 (820)
Q Consensus 398 ~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~ 473 (820)
..|...+..- ...+...||.|.-. ...|.+.-|..-|-+-.. ..| ...+|..+--.|.+..+++.|.+.+..
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~---sep~~~~~W~NlgvL~l~n~d~E~A~~af~~ 875 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRF---SEPTCHCQWLNLGVLVLENQDFEHAEPAFSS 875 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhh---ccccchhheeccceeEEecccHHHhhHHHHh
Confidence 3455555543 24577888887655 555777777776665544 333 556777777778888899999999888
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--------CCCccccchHHHHHHhcCChHHHHHHHHHHHH---
Q 003439 474 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP--------RSSSVPWNAIISCHGIHGQGDKALNFFRQMLD--- 542 (820)
Q Consensus 474 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--- 542 (820)
.....+ .+..-+-...-..-..|+.-++..+|..-. -++..-|-.-.....++|+.++-+...++.-.
T Consensus 876 ~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~ 954 (1238)
T KOG1127|consen 876 VQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL 954 (1238)
T ss_pred hhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH
Confidence 776432 233333333333445677777887776421 22333355555556677777665554444322
Q ss_pred ------cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHH----HHHHHHcCCHHHHHHHHHhCC
Q 003439 543 ------EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM----VDLFGRAGHLGMAHNFIQNMP 612 (820)
Q Consensus 543 ------~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l----i~~~~~~g~~~eA~~~~~~m~ 612 (820)
.|.+-+...|........+.+.++.|.+...+...-...+-+...|+.. ..++...|.++.|..-+...+
T Consensus 955 al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~ 1034 (1238)
T KOG1127|consen 955 ALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEW 1034 (1238)
T ss_pred HHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccc
Confidence 1233345688888888888888888888777654322234455555543 344555678887777666554
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH---hHHHHhhhcCCcchHHHHHHHHH
Q 003439 613 VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV---LMSNIYANVGKWEGVDEVRSLAR 678 (820)
Q Consensus 613 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~---~l~~~y~~~g~~~~A~~~~~~m~ 678 (820)
.+-|.-+-.+-+.. .-.|+++.+.+.|++++.+.-++...-+ .++......+.-+.|....-+..
T Consensus 1035 ~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1035 MEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred hhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 44444444333333 4567899999999999887654444223 34444556666677766544443
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.44 E-value=9.5e-06 Score=81.77 Aligned_cols=179 Identities=9% Similarity=-0.014 Sum_probs=112.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---Cc---cccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh----H
Q 003439 482 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRS---SS---VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI----T 551 (820)
Q Consensus 482 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t 551 (820)
....+-.+...|.+.|++++|...|+++... +. ..|..+..+|...|++++|+..++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 3445556666677777777777777766522 11 23556667777777777777777777763 44322 3
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHhHHhhCCCCChh-HHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH
Q 003439 552 FVSLLTACSHS--------GLVSEGQRYFHMMQEEFGIKPHLK-HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 622 (820)
Q Consensus 552 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~g~~p~~~-~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ 622 (820)
+..+..++... |+.++|.+.++.+... .|+.. .+..+.. .+...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~----~~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKR----MDYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHH----HHHHHHHH-----------HHHHHH
Confidence 44444445443 5667777777766643 33321 1111111 00011000 001124
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCC---cchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 623 LLGACRIHGNMELGAVASDRLFEVDSEN---VGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 623 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+...+...|+++.|+..++++++..|++ +..+..++.+|.+.|++++|...++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566888999999999999999987764 467889999999999999999998887654
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.44 E-value=7.8e-06 Score=83.83 Aligned_cols=225 Identities=11% Similarity=0.077 Sum_probs=142.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCC-CchhHHHHHHHHH
Q 003439 415 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC-FDVFVATCLVDMY 493 (820)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~y 493 (820)
..-+.++|.-.|+++.++ .++.. . -.|.......+...+....+-+.+..-+......... .+..+......+|
T Consensus 38 ~~~~~Rs~iAlg~~~~vl---~ei~~-~-~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVL---SEIKK-S-SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHTT-HHHHH---HHS-T-T-SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHH---HHhcc-C-CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 334556666677666543 33322 2 2455544444444443333333333333322222222 2333334444567
Q ss_pred HhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHH
Q 003439 494 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH----SGLVSEGQ 569 (820)
Q Consensus 494 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~ 569 (820)
...|++++|.+++.+. .+.......+..|.+.++++.|.+.++.|.+ +..|. +...+..++.. .+.+.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhHHHHH
Confidence 7889999999888765 4455556678889999999999999999987 44444 44445444432 34689999
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCh-hHHHHHHHHHhcc
Q 003439 570 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNM-ELGAVASDRLFEV 646 (820)
Q Consensus 570 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~ 646 (820)
.+|+++.++ ..+++.+.+.+.-+....|++++|.+++++. ...|+ ..++-.++......|+. +.+.+...++...
T Consensus 188 y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 188 YIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999998754 4577888999999999999999999999875 44454 44777777777788877 6788899999888
Q ss_pred CCCCc
Q 003439 647 DSENV 651 (820)
Q Consensus 647 ~p~~~ 651 (820)
.|+++
T Consensus 266 ~p~h~ 270 (290)
T PF04733_consen 266 NPNHP 270 (290)
T ss_dssp TTTSH
T ss_pred CCCCh
Confidence 89754
No 104
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=0.004 Score=68.84 Aligned_cols=298 Identities=14% Similarity=0.119 Sum_probs=159.1
Q ss_pred CCChhhhHHHHHHHHccCChHHHHHHhcccCCC-Ccc-----------hHHHHHHHHHhCCCchHHHHHHHHHhhhCCCC
Q 003439 76 IKTVFSSTKLVNFYANLGDLSFSRHTFDHISYR-NVY-----------TWNSMISVYVRCGRLSEAVDCFYQFTLTSGLR 143 (820)
Q Consensus 76 ~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~-~~~-----------~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~~ 143 (820)
..+-.+|..+.+|+.+..+++-|.-.+..|.+. .+. .=.....--..-|..++|+.+|++
T Consensus 754 IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~-------- 825 (1416)
T KOG3617|consen 754 IKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQ-------- 825 (1416)
T ss_pred HhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHH--------
Confidence 356678999999999999998888877777531 100 000011111234555555555555
Q ss_pred CCccccHHHHHhhcCCcchHHHHHHHHHhCCCCcHHHHHHHHHHhhcCCChhHHHHHhccCCCC-CcccHHHHHHHHHhC
Q 003439 144 PDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVR-DSGSWNAMISGYCQS 222 (820)
Q Consensus 144 p~~~t~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~~ 222 (820)
-.+ |..|=..|-..|.+++|.++-+.-.+- =..||..-..-+-..
T Consensus 826 -------------------------ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 826 -------------------------CKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred -------------------------HHH---------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 222 223334566677888877775442211 112444444445556
Q ss_pred CChhHHHHHHHHHHHCC-------------------CCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHH
Q 003439 223 GNAVEALDILDEMRLEG-------------------VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN 283 (820)
Q Consensus 223 g~~~~A~~l~~~m~~~g-------------------~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 283 (820)
++.+.|++.|++-.... -.-|...|.---.-.-..|+++.|..++..... |-
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 66777776665532110 011112222222222334555555555444322 33
Q ss_pred HHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchh
Q 003439 284 NLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 363 (820)
Q Consensus 284 ~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 363 (820)
+++...|-.|+.++|-++-++- .|..+...|...|-..|++.+|..+|.+.+ +|...|+.|-..+--+.
T Consensus 943 s~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~ 1011 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDR 1011 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHH
Confidence 4455555567777776665543 466677778888888999999999998864 45555555544332111
Q ss_pred hhhHHHHHHHhCCcCcch-----------hHHhHHHHHHHhcCCHHHHHHHHhcCC--------------CCCchHHHHH
Q 003439 364 SRSVHGFIMRRGWFMEDV-----------IIGNAVVDMYAKLGIINSACAVFEGLP--------------VKDVISWNTL 418 (820)
Q Consensus 364 a~~i~~~~~~~g~~~~~~-----------~~~~~li~~y~~~g~~~~A~~~f~~~~--------------~~~~~~~~~l 418 (820)
+.....-.| +.|. .-..--+..|-|.|.+.+|+++-=+-. ..|....+--
T Consensus 1012 ---L~nlal~s~--~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1012 ---LANLALMSG--GSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred ---HHHHHhhcC--chhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 111111111 0110 111234567888888888876532221 1244444555
Q ss_pred HHHHHHcCChHHHHHHHHhhhh
Q 003439 419 ITGYAQNGLASEAIEVFQMMEE 440 (820)
Q Consensus 419 i~~~~~~g~~~~A~~l~~~m~~ 440 (820)
..-++.+.++++|..++-..++
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHH
Confidence 5566777888888888766654
No 105
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=0.00016 Score=76.28 Aligned_cols=436 Identities=12% Similarity=0.022 Sum_probs=237.0
Q ss_pred HhhcCCChhHHHHHhccCC---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-HHHHhHHHhhhcCCChHH
Q 003439 187 MYCRFGLANVARKLFDDMP---VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP-ITVASILPVCARSDNILS 262 (820)
Q Consensus 187 ~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~ 262 (820)
+....|+++.|...|-+.. .+|.+.|.-=..+|+..|++++|++=-.+-++ +.|+- --|+-.-.+....|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHH
Confidence 4456799999999997754 46788888889999999999998876655544 45653 467777777888889999
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHH-HHHHhccCCCCchHHHHHH-----HHHHhCCChhhHHHHHHHH
Q 003439 263 GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA-LRVFDQMMERDVVSWNSII-----AAYEQSNDPITAHGFFTTM 336 (820)
Q Consensus 263 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A-~~~f~~m~~~d~~~~~~li-----~~~~~~g~~~~A~~~~~~m 336 (820)
|..-|..-++.. +.+...++.|.+++ ..+.+ .+.|. ++..|..+. ..+.....+..-++.+++
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~~~~~~-----~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~- 157 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAADQLFT-----KPYFHEKLANLPLTNYSLSDPAYVKILEIIQK- 157 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHhhhhcc-----CcHHHHHhhcChhhhhhhccHHHHHHHHHhhc-
Confidence 998888877764 44677788888877 11111 11111 112222111 111111111111111110
Q ss_pred HHcCCCCCcc-h---HHHHHHHHHhcCcchhhhhHHHHHH--HhCCcCcchhHHhHHHHHHHhcCC-HHHHHHHHhcCCC
Q 003439 337 QQAGIQPDLL-T---LVSLTSIVAQLNDCRNSRSVHGFIM--RRGWFMEDVIIGNAVVDMYAKLGI-INSACAVFEGLPV 409 (820)
Q Consensus 337 ~~~g~~pd~~-t---~~~ll~a~~~~~~~~~a~~i~~~~~--~~g~~~~~~~~~~~li~~y~~~g~-~~~A~~~f~~~~~ 409 (820)
.|... . ...++.+.......+.....-.... ..+ ..|.. --.......++ .++.+...
T Consensus 158 -----~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~-~~p~~----~~~~~~~~~~d~~ee~~~k~----- 222 (539)
T KOG0548|consen 158 -----NPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASM-AEPCK----QEHNGFPIIEDNTEERRVKE----- 222 (539)
T ss_pred -----CcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCC-CCccc----ccCCCCCccchhHHHHHHHH-----
Confidence 11000 0 0111111111110000000000000 000 00000 00000000000 00000000
Q ss_pred CCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHh-hHHHHhhccCChhHHHHHHHHHHHhCCCCc------
Q 003439 410 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV-SILPAYSHVGALRQGIKIHARVIKNCLCFD------ 482 (820)
Q Consensus 410 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~-~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~------ 482 (820)
-..-...+..+.-+..+++.|++-+..... +. ...||. ..-.++...|........-...++.|...-
T Consensus 223 -~a~~ek~lgnaaykkk~f~~a~q~y~~a~e---l~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klI 297 (539)
T KOG0548|consen 223 -KAHKEKELGNAAYKKKDFETAIQHYAKALE---LA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLI 297 (539)
T ss_pred -hhhHHHHHHHHHHHhhhHHHHHHHHHHHHh---Hh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHH
Confidence 001123344455555666666666666555 33 333433 333345566655555554444444332210
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHh
Q 003439 483 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSH 561 (820)
Q Consensus 483 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~ 561 (820)
......+..+|.+.++.+.|...|.+...+-.. -....+....+++++......- +.|+.. -...=.+.+.+
T Consensus 298 ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk 370 (539)
T KOG0548|consen 298 AKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFK 370 (539)
T ss_pred HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHh
Confidence 111222445778888999999998875421111 1122334455666666655555 456542 22223667888
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHHH
Q 003439 562 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDAS-IWGALLGACRIHGNMELGAVA 639 (820)
Q Consensus 562 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~ 639 (820)
.|++..|...+.+++.. -+-|...|+.-.-+|.+.|.+.+|++--+.. ...|+.. .|.-=..++....+++.|.+.
T Consensus 371 ~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAlea 448 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEA 448 (539)
T ss_pred ccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998854 2336678999999999999999998876655 4566544 555556666677799999999
Q ss_pred HHHHhccCCCCcchHHhHHHHhhhc
Q 003439 640 SDRLFEVDSENVGYYVLMSNIYANV 664 (820)
Q Consensus 640 ~~~~~~~~p~~~~~~~~l~~~y~~~ 664 (820)
|++.++++|++..+...+...+...
T Consensus 449 y~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 449 YQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHh
Confidence 9999999999888877777766654
No 106
>PF12854 PPR_1: PPR repeat
Probab=98.42 E-value=3.2e-07 Score=59.72 Aligned_cols=33 Identities=36% Similarity=0.574 Sum_probs=26.6
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHhccC
Q 003439 274 GLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 306 (820)
Q Consensus 274 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 306 (820)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.41 E-value=1.3e-05 Score=92.71 Aligned_cols=198 Identities=13% Similarity=0.138 Sum_probs=165.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH
Q 003439 482 DVFVATCLVDMYGKCGRIDDAMSLFYQVPR--------SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 553 (820)
Q Consensus 482 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 553 (820)
+...|-..|......++++.|++++++..+ .-...|.+++..-...|.-+...++|+++.+. .--...|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 455666777777888999999999988762 12345999998888889889999999999883 33345788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh
Q 003439 554 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD---ASIWGALLGACRI 629 (820)
Q Consensus 554 ~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~---~~~~~~ll~~~~~ 629 (820)
.|+..|.+.+..++|.++++.|.++++ .....|...++.+.+..+-+.|..+++++ ..-|. .....-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999999877 56678999999999999999999999876 33332 3355566666789
Q ss_pred cCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCCC
Q 003439 630 HGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 683 (820)
Q Consensus 630 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 683 (820)
+||.++|+.+|+.++.-.|.....|..++++-.+.|..+.++.+|++....++.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999988663
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.41 E-value=4.1e-06 Score=76.59 Aligned_cols=121 Identities=13% Similarity=0.093 Sum_probs=92.7
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 003439 535 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-P 612 (820)
Q Consensus 535 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~ 612 (820)
.+|++.++ +.|+. +..+..++...|++++|...|+.... +.| +...|..+..++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45666666 45664 44566777888888888888888763 444 5677788888888888888888888877 4
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhh
Q 003439 613 VRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 662 (820)
Q Consensus 613 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 662 (820)
..| +...|..+..++...|+.++|+..+++++++.|+++..+...+++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 445 55688888888888899999999999999999988888877766543
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.40 E-value=4.9e-06 Score=76.09 Aligned_cols=98 Identities=11% Similarity=-0.061 Sum_probs=87.9
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHH
Q 003439 581 IKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 658 (820)
Q Consensus 581 ~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 658 (820)
+.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|+..|+++++++|+++..+..++
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 4455 4556788899999999999999987 4555 5669999999999999999999999999999999999999999
Q ss_pred HHhhhcCCcchHHHHHHHHHhC
Q 003439 659 NIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 659 ~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.++...|++++|...++...+.
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999998765
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.34 E-value=1.6e-05 Score=76.89 Aligned_cols=117 Identities=10% Similarity=0.057 Sum_probs=83.9
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--hhHH
Q 003439 562 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGAC-RIHGN--MELG 636 (820)
Q Consensus 562 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~-~~~g~--~~~a 636 (820)
.++.+++...++...+. -+.+...|..|...|...|++++|.+.+++. ...| +..+|..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 44455555555554432 2335566777777777777777777777766 4455 445777777653 56666 4888
Q ss_pred HHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 637 AVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 637 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
..+++++++.+|+++.++..|+..+...|++++|...++++.+.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888765
No 111
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.32 E-value=0.00051 Score=74.07 Aligned_cols=266 Identities=12% Similarity=0.089 Sum_probs=169.3
Q ss_pred chHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhh-HHHHhhccCChhHHHHHHHHHHHhCCCCchhHHH---
Q 003439 412 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVS-ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT--- 487 (820)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~-ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~--- 487 (820)
...|..+...+...|+.+++...+.+..+.....++...... ....+...|+++.+.++++.+.+... .+...+.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHhH
Confidence 445666777777788888887777776551222222221211 12235678999999999999888643 2333433
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCccc---cchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcC
Q 003439 488 CLVDMYGKCGRIDDAMSLFYQVPRSSSVP---WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSG 563 (820)
Q Consensus 488 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g 563 (820)
.+.......|..+.+.+.++...+.+... +..+...+...|++++|.+.+++..+. .|+. ..+..+..++...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcC
Confidence 22222334566777777776543333322 334556788999999999999999994 5654 56778888999999
Q ss_pred CHHHHHHHHHHhHHhhCCCCCh--hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC--CHHHH--H--HHHHHHHhcCChh
Q 003439 564 LVSEGQRYFHMMQEEFGIKPHL--KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP--DASIW--G--ALLGACRIHGNME 634 (820)
Q Consensus 564 ~~~~a~~~~~~m~~~~g~~p~~--~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p--~~~~~--~--~ll~~~~~~g~~~ 634 (820)
++++|..+++.........|+. ..|..+...+...|++++|.+++++. ...| ..... + .++.-+...|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 9999999999877532222332 34557888999999999999999986 2233 22211 1 3344445556555
Q ss_pred HHHHH---HHHHhccCCCCc--chHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 635 LGAVA---SDRLFEVDSENV--GYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 635 ~a~~~---~~~~~~~~p~~~--~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.+.+. ........|... ..-...+.++...|++++|....+.+...
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 44444 222111112211 12235777888999999999999888764
No 112
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.31 E-value=0.0081 Score=63.78 Aligned_cols=421 Identities=13% Similarity=0.156 Sum_probs=216.8
Q ss_pred CCcHHHHHHHHHHhhcCCChhHHHHHhccCCC--C-CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHH
Q 003439 175 EWDVFVAASLLHMYCRFGLANVARKLFDDMPV--R-DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 251 (820)
Q Consensus 175 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 251 (820)
+-|+..|+.||.-+... .++++++.++++.. | ....|..-|.+-....+++....+|.+....-.. ...|..-|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn--lDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN--LDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--HhHHHHHH
Confidence 56788999999977766 89999999999874 3 4567999999999999999999999988754333 33333333
Q ss_pred Hhhhc-CCChHH----HHHHHHHH-HHhCCCc-cHHHHHHHHHH---------HHccCCHHHHHHHHhccCCC-------
Q 003439 252 PVCAR-SDNILS----GLLIHLYI-VKHGLEF-NLFVSNNLINM---------YAKFGMMRHALRVFDQMMER------- 308 (820)
Q Consensus 252 ~a~~~-~~~~~~----a~~~~~~~-~~~g~~~-~~~~~~~li~~---------y~~~g~~~~A~~~f~~m~~~------- 308 (820)
.--.+ .++... -.+.|+.. .+.|+++ +...|+..+.. |....+++..+++++++...
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 32221 222222 22334443 3456554 33456666554 34445677788888887552
Q ss_pred ---CchHHHHHHHH-----HH--hCCChhhHHHHHHHHHH--cCCCCCcch---------------HHHHHHHHHhcCcc
Q 003439 309 ---DVVSWNSIIAA-----YE--QSNDPITAHGFFTTMQQ--AGIQPDLLT---------------LVSLTSIVAQLNDC 361 (820)
Q Consensus 309 ---d~~~~~~li~~-----~~--~~g~~~~A~~~~~~m~~--~g~~pd~~t---------------~~~ll~a~~~~~~~ 361 (820)
|-..|..=|.. +. +...+..|..+++++.. .|+.-+..+ |..+|.-= +.+.+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE-ksNpL 252 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE-KSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH-hcCCc
Confidence 22222211111 11 22345667777777643 343332222 22222111 11111
Q ss_pred h--hhhh-------HHHHHHH-hCCcCcchhHHh-----HHHHHHHhcCCHH-------HHHHHHhcCCCC----CchHH
Q 003439 362 R--NSRS-------VHGFIMR-RGWFMEDVIIGN-----AVVDMYAKLGIIN-------SACAVFEGLPVK----DVISW 415 (820)
Q Consensus 362 ~--~a~~-------i~~~~~~-~g~~~~~~~~~~-----~li~~y~~~g~~~-------~A~~~f~~~~~~----~~~~~ 415 (820)
. .+.. +|++.+. .+ +.|++...- ..-+.+...|+.. ++..+++...+. +...|
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~-~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLG-YHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 0000 1111111 11 222221111 1112233333332 233333322111 11111
Q ss_pred HHHHHHH---HHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCC-chhHHHHHHH
Q 003439 416 NTLITGY---AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF-DVFVATCLVD 491 (820)
Q Consensus 416 ~~li~~~---~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~ 491 (820)
..+..-- .+....+.....+++......+.|+ .+|...++.-.+..-++.|+.+|..+.+.+..+ ++.++++++.
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 1111100 0001234444555555442334444 356666666667777777777777777766555 6777777777
Q ss_pred HHHhcCCHHHHHHHHhhCC--CCCccc-cchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCCHH
Q 003439 492 MYGKCGRIDDAMSLFYQVP--RSSSVP-WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH--ITFVSLLTACSHSGLVS 566 (820)
Q Consensus 492 ~y~~~g~~~~A~~~~~~~~--~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~ 566 (820)
-|+ .++.+-|.++|+.-. -.|... -+..+.-+...++-..|..+|++.+..++.||. ..|..+|.-=+.-|+..
T Consensus 411 y~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 411 YYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred HHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 665 356677777776433 122222 344455555666666677777777666555554 36666666666667766
Q ss_pred HHHHHHHHhHHhhC--CCCChhHHHHHHHHHHHcCCHH
Q 003439 567 EGQRYFHMMQEEFG--IKPHLKHYGCMVDLFGRAGHLG 602 (820)
Q Consensus 567 ~a~~~~~~m~~~~g--~~p~~~~~~~li~~~~~~g~~~ 602 (820)
.+.++-+++...+. ..|...+-..+++.|+-.+...
T Consensus 490 si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 490 SILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred HHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 66666666555443 3333334444555555544443
No 113
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.31 E-value=8.4e-06 Score=73.15 Aligned_cols=118 Identities=8% Similarity=-0.017 Sum_probs=98.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhh
Q 003439 585 LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 662 (820)
Q Consensus 585 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 662 (820)
.+..-.+...+...|++++|..+|+-. ...| +..-|..|...|...|++++|+..|.++..++|+++..+..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344556667788899999999999877 4556 45589999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHhCCCCcCCceeEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHH
Q 003439 663 NVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMK 725 (820)
Q Consensus 663 ~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 725 (820)
..|+.++|.+-|+...... ..+|+..++..+.+.....+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 9999999999999887641 126777777777777666654
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.26 E-value=2.6e-05 Score=84.91 Aligned_cols=220 Identities=17% Similarity=0.192 Sum_probs=136.1
Q ss_pred cCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHH
Q 003439 377 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 456 (820)
Q Consensus 377 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~ 456 (820)
++|-..+...+...+.++|....|..+|+++ ..|.-.|..|+..|+..+|..+..+-.+ -+||..-|..+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LG- 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLG- 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhh-
Confidence 4555666677788888888888888888874 4677778888888887777777666544 344544444444
Q ss_pred HhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHH
Q 003439 457 AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNF 536 (820)
Q Consensus 457 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 536 (820)
|......-++.|.++++....+--..|+-+ ...+++++++.+.
T Consensus 465 ----------------------------------Dv~~d~s~yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~h 507 (777)
T KOG1128|consen 465 ----------------------------------DVLHDPSLYEKAWELSNYISARAQRSLALL---ILSNKDFSEADKH 507 (777)
T ss_pred ----------------------------------hhccChHHHHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHH
Confidence 433333334555555544332211111111 1235777777777
Q ss_pred HHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 003439 537 FRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNM-PV 613 (820)
Q Consensus 537 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~ 613 (820)
|+.-.+ +.|- ..||..+..+..+.++++.|.+.|.... .+.|+ .+.||.+-.+|.+.|+..+|...+++. +.
T Consensus 508 le~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 508 LERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred HHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 777666 4453 3477777777777788888888777665 34553 456677777777777777776666665 22
Q ss_pred C-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 003439 614 R-PDASIWGALLGACRIHGNMELGAVASDRLFEVD 647 (820)
Q Consensus 614 ~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 647 (820)
+ -+-.+|...+-....-|+.+.|++++.+++.+.
T Consensus 583 n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 583 NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 2 223366666666666777777777777666543
No 115
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=0.00028 Score=68.68 Aligned_cols=178 Identities=16% Similarity=0.145 Sum_probs=118.4
Q ss_pred hcCCHHHHHHHHhhCC-CCCccccchHHHHHHhcCChHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 003439 495 KCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE-GVRPDHITFVSLLTACSHSGLVSEGQRYF 572 (820)
Q Consensus 495 ~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 572 (820)
..+++..+..+.++.+ +.+..+.+.......+.|++++|++-|+...+- |..| ...|+..+ +..+.|+++.|+++.
T Consensus 124 se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~i 201 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHI 201 (459)
T ss_pred ccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHH
Confidence 3466666677777766 345555555555556777777777777777663 3333 33444333 334566777777777
Q ss_pred HHhHHhhCCCC-------------C--------hhHHHHHH-------HHHHHcCCHHHHHHHHHhCC----CCCCHHHH
Q 003439 573 HMMQEEFGIKP-------------H--------LKHYGCMV-------DLFGRAGHLGMAHNFIQNMP----VRPDASIW 620 (820)
Q Consensus 573 ~~m~~~~g~~p-------------~--------~~~~~~li-------~~~~~~g~~~eA~~~~~~m~----~~p~~~~~ 620 (820)
.++.++ |++. | .-+-+.++ ..+.+.|+.+.|.+.+..|| .+-|++|.
T Consensus 202 SEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTL 280 (459)
T KOG4340|consen 202 SEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTL 280 (459)
T ss_pred HHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhh
Confidence 777654 4432 1 11223333 34568899999999999995 33577776
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHH
Q 003439 621 GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 676 (820)
Q Consensus 621 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 676 (820)
..+.- --..+++..+.+-++-+++++|--..++..+.-+|++..-++-|..+..+
T Consensus 281 HN~Al-~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 281 HNQAL-MNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHH-hcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 55432 23456777888888889999998888999999999999998888877643
No 116
>PLN02789 farnesyltranstransferase
Probab=98.21 E-value=0.00019 Score=74.63 Aligned_cols=169 Identities=14% Similarity=0.150 Sum_probs=115.1
Q ss_pred HHHhcC-CHHHHHHHHhhCC---CCCccccchHHHHHHhcCCh--HHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCC
Q 003439 492 MYGKCG-RIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQG--DKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGL 564 (820)
Q Consensus 492 ~y~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 564 (820)
++.+.| .+++++..++++. .++...|+-..-.+.+.|+. ++++.+++++++ ..| |..+|.....++.+.|+
T Consensus 80 iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~ 157 (320)
T PLN02789 80 CLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGG 157 (320)
T ss_pred HHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhh
Confidence 334444 4566666666554 34444566554444455542 677888888887 456 45578888888888888
Q ss_pred HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHc---CCH----HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC----
Q 003439 565 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA---GHL----GMAHNFIQNM-PVRP-DASIWGALLGACRIHG---- 631 (820)
Q Consensus 565 ~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~---g~~----~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g---- 631 (820)
++++++.++.+.+. . .-+...|+....++.+. |.. +++.++..++ ...| |...|+.+...+...+
T Consensus 158 ~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~ 235 (320)
T PLN02789 158 WEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALV 235 (320)
T ss_pred HHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccc
Confidence 99999988888754 2 22445666665555544 222 4566776444 5566 4569999999988743
Q ss_pred ChhHHHHHHHHHhccCCCCcchHHhHHHHhhhc
Q 003439 632 NMELGAVASDRLFEVDSENVGYYVLMSNIYANV 664 (820)
Q Consensus 632 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 664 (820)
+..+|...+.+++..+|+++.+...|+++|...
T Consensus 236 ~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 236 SDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred cchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 456799999999999999999999999999864
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.20 E-value=0.00013 Score=70.51 Aligned_cols=153 Identities=8% Similarity=0.118 Sum_probs=117.0
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHH
Q 003439 490 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEG 568 (820)
Q Consensus 490 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 568 (820)
+-+|.+.|+++......+.+..+. . .|...++.++++..+++.++. .| |...|..+...|...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 456888888877655554332221 1 122367778888889888884 45 556888899999999999999
Q ss_pred HHHHHHhHHhhCCCC-ChhHHHHHHHH-HHHcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003439 569 QRYFHMMQEEFGIKP-HLKHYGCMVDL-FGRAGH--LGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDR 642 (820)
Q Consensus 569 ~~~~~~m~~~~g~~p-~~~~~~~li~~-~~~~g~--~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 642 (820)
...|+...+ +.| +...+..+..+ |.+.|+ .++|.+++++. ...| +..++..+...+...|++++|+..+++
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998874 455 56778888886 467787 59999999987 5566 456888999999999999999999999
Q ss_pred HhccCCCCcchHH
Q 003439 643 LFEVDSENVGYYV 655 (820)
Q Consensus 643 ~~~~~p~~~~~~~ 655 (820)
++++.|.+..-+.
T Consensus 170 aL~l~~~~~~r~~ 182 (198)
T PRK10370 170 VLDLNSPRVNRTQ 182 (198)
T ss_pred HHhhCCCCccHHH
Confidence 9999987765443
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.20 E-value=6.9e-05 Score=75.45 Aligned_cols=179 Identities=13% Similarity=0.038 Sum_probs=124.4
Q ss_pred ccHhhHHHHhhccCChhHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---Ccc---ccchH
Q 003439 449 GTYVSILPAYSHVGALRQGIKIHARVIKNCLC-F-DVFVATCLVDMYGKCGRIDDAMSLFYQVPRS---SSV---PWNAI 520 (820)
Q Consensus 449 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~---~~~~l 520 (820)
..+......+...|+++.|...++.+.+.... | ....+..+...|.+.|++++|...|+++.+. +.. .|..+
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~ 113 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLR 113 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHH
Confidence 45566677788999999999999999876432 1 1246677889999999999999999988632 222 24445
Q ss_pred HHHHHhc--------CChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHH
Q 003439 521 ISCHGIH--------GQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 591 (820)
Q Consensus 521 i~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l 591 (820)
..++.+. |+.++|++.|+++... .|+.. ....+..... ... ... .....+
T Consensus 114 g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~~---------~~~~~~ 172 (235)
T TIGR03302 114 GLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RLA---------GKELYV 172 (235)
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HHH---------HHHHHH
Confidence 5556544 7899999999999984 67653 2222211100 000 000 112356
Q ss_pred HHHHHHcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 003439 592 VDLFGRAGHLGMAHNFIQNM----PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDS 648 (820)
Q Consensus 592 i~~~~~~g~~~eA~~~~~~m----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 648 (820)
.+.|.+.|++++|...+++. +..|. ...|..+..++...|+.++|...++.+....|
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 67888999999999988876 22332 45888999999999999999998887766544
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.18 E-value=6.3e-05 Score=86.15 Aligned_cols=139 Identities=9% Similarity=0.087 Sum_probs=109.5
Q ss_pred CCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC-hhHHH
Q 003439 512 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYG 589 (820)
Q Consensus 512 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~ 589 (820)
.+...+-.|.....+.|..++|..+++...+ +.||.. ....+..++.+.+.+++|....++... ..|+ ..+..
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 3456677778888888999999999999988 688765 677788888999999999998888773 4554 56777
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH
Q 003439 590 CMVDLFGRAGHLGMAHNFIQNMP-VRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 655 (820)
Q Consensus 590 ~li~~~~~~g~~~eA~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 655 (820)
.+..++...|++++|.++|++.- ..|+ ..+|.++..++...|+.++|...|+++++...+-...|.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 78888889999999999998872 3444 568888888899999999999999999887654444433
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.17 E-value=0.00062 Score=71.43 Aligned_cols=115 Identities=15% Similarity=0.098 Sum_probs=59.8
Q ss_pred HhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHH
Q 003439 560 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGA 637 (820)
Q Consensus 560 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 637 (820)
...|.+++|+..++.+... .+-|+.......+.+.+.|+.++|.+.++++ ...|+ ...|-.+..++.+.|+..+|+
T Consensus 317 ~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 3445555555555554422 1223333444455555555555555555554 33444 335555555555555555555
Q ss_pred HHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHH
Q 003439 638 VASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 676 (820)
Q Consensus 638 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 676 (820)
..++....-+|+|+..|..|+..|...|+..+|...+.+
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 555555555555555555555555555555554444433
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.14 E-value=3e-05 Score=84.35 Aligned_cols=186 Identities=17% Similarity=0.165 Sum_probs=103.2
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 003439 479 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 558 (820)
Q Consensus 479 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 558 (820)
++|--..-..+.+.+.++|-...|..+|+++. .|.-.|.+|...|+..+|..+..+-.+ -+||+..|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 44444555667777778888888888887643 466677778888877788777777766 36777777777777
Q ss_pred HHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 003439 559 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELG 636 (820)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a 636 (820)
.-...-+++|+++++....+ .-..+.....+.++++++.+.++.- .++|- ..+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 66666667777766544322 0001111112234444444444432 33332 22444444444444445555
Q ss_pred HHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 637 AVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 637 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
.+.|...+.++|++...|..++-+|.+.|+..+|...++++.+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK 581 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence 5555555555555555555555555555544444444444443
No 122
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.13 E-value=0.00028 Score=82.11 Aligned_cols=230 Identities=11% Similarity=0.192 Sum_probs=161.3
Q ss_pred CCCc-ccHhhHHHHhhccCChhHHHHHHHHHHHh-CCCC---chhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CC-cccc
Q 003439 445 NPNQ-GTYVSILPAYSHVGALRQGIKIHARVIKN-CLCF---DVFVATCLVDMYGKCGRIDDAMSLFYQVPR-SS-SVPW 517 (820)
Q Consensus 445 ~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~-~~~~ 517 (820)
.||+ ..|...+.-..+.++.+.|+++.+++++. +++- -.-+|.+++++-..-|.-+...++|++..+ .| ...|
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHH
Confidence 4543 44556666677778888888888777653 2221 134677777777777878888888888773 23 3448
Q ss_pred chHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC---hhHHHHHHHH
Q 003439 518 NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH---LKHYGCMVDL 594 (820)
Q Consensus 518 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~---~~~~~~li~~ 594 (820)
..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+...-+.|..++.+..+. -|. .....-.+.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHH
Confidence 88888999999999999999999886 4545568888888888888888888888887743 343 4445566777
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccC--CCCcchHHhH-HHHhhhcCCcch
Q 003439 595 FGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVD--SENVGYYVLM-SNIYANVGKWEG 669 (820)
Q Consensus 595 ~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l-~~~y~~~g~~~~ 669 (820)
-.+.|+-+.+..+|+.. .-.| ..-.|+.++..-.+||+.+.++.+|++++++. |.....+.-. ...-..-|+-+.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 78899999999999876 2233 45589999999999999999999999998754 5444433322 222223355554
Q ss_pred HHHHHHHHH
Q 003439 670 VDEVRSLAR 678 (820)
Q Consensus 670 A~~~~~~m~ 678 (820)
+..+-.++.
T Consensus 1690 vE~VKarA~ 1698 (1710)
T KOG1070|consen 1690 VEYVKARAK 1698 (1710)
T ss_pred HHHHHHHHH
Confidence 544444443
No 123
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.12 E-value=8.9e-05 Score=78.87 Aligned_cols=211 Identities=13% Similarity=0.140 Sum_probs=143.2
Q ss_pred CcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHH
Q 003439 359 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVF 435 (820)
Q Consensus 359 ~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 435 (820)
|++..|.-.++..++.. |.+...|--|.......++-..|+..+.+.. ..|....-+|...|...|.-.+|+..|
T Consensus 299 G~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred CCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 44444444444444443 5555666666666666666556655555443 345666677777888888888888888
Q ss_pred HhhhhcCCC-----CC---CcccHhhHHHHhhccCChhHHHHHHHHH-HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 003439 436 QMMEECNEI-----NP---NQGTYVSILPAYSHVGALRQGIKIHARV-IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 506 (820)
Q Consensus 436 ~~m~~~~g~-----~p---d~~t~~~ll~a~~~~~~~~~a~~i~~~~-~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 506 (820)
+.-.. ... .+ +..+-.. ........+....++|-.+ ...+..+|+.+...|.-.|--.|+++.|...|
T Consensus 377 ~~Wi~-~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 377 DKWIR-NKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHH-hCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 87754 110 00 1100000 1122222334444554444 45565678888999999999999999999999
Q ss_pred hhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003439 507 YQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQ 576 (820)
Q Consensus 507 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 576 (820)
+... +.|...||.|...++...+.++|+..|++.++ ++|+-+ ....|.-+|...|.+++|.+.|-...
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9776 55778899999999999999999999999999 799875 55567778999999999999886654
No 124
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=4.4e-06 Score=55.27 Aligned_cols=35 Identities=34% Similarity=0.681 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 003439 210 GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP 244 (820)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 244 (820)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.11 E-value=0.00011 Score=70.84 Aligned_cols=134 Identities=14% Similarity=0.088 Sum_probs=102.1
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 003439 545 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM--PVRPDASIWGA 622 (820)
Q Consensus 545 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m--~~~p~~~~~~~ 622 (820)
..|+......+-.++...|+-++...+...... .-..+......++....+.|++.+|...+++. .-+||...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 355443335566677777877777777665442 22334455566888888889999999888887 34456778988
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 623 LLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 623 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+..+|-+.|+.++|...|.+++++.|+++.....|+-.|.-.|++++|..++......
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 8888999999999999999999999988888888888888899999998888777654
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.10 E-value=0.00042 Score=72.63 Aligned_cols=140 Identities=17% Similarity=0.151 Sum_probs=113.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH-HHHHHhcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHH
Q 003439 520 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL-LTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGR 597 (820)
Q Consensus 520 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~ 597 (820)
....+...|++++|+..++.++. -.||...|..+ ...+...++.++|.+.++.+. ...|+ ....-.+..+|.+
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~all~ 386 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHHHHHh
Confidence 33445577999999999999988 47877666554 557899999999999999988 45676 4566678899999
Q ss_pred cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHH
Q 003439 598 AGHLGMAHNFIQNM--PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRS 675 (820)
Q Consensus 598 ~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 675 (820)
.|+..+|..+++.. ..+-|+..|..|..+|...|+..++.... +..|+-.|+|++|.....
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFLM 449 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHHH
Confidence 99999999999887 33446789999999999999987777654 446888999999999999
Q ss_pred HHHhCC
Q 003439 676 LARDRG 681 (820)
Q Consensus 676 ~m~~~~ 681 (820)
...++.
T Consensus 450 ~A~~~~ 455 (484)
T COG4783 450 RASQQV 455 (484)
T ss_pred HHHHhc
Confidence 888763
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.06 E-value=8.2e-05 Score=67.47 Aligned_cols=95 Identities=16% Similarity=0.192 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhh
Q 003439 586 KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 663 (820)
Q Consensus 586 ~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 663 (820)
.....+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 44555666677777777777777765 3334 455777777788888888888888888888888888888888888888
Q ss_pred cCCcchHHHHHHHHHhC
Q 003439 664 VGKWEGVDEVRSLARDR 680 (820)
Q Consensus 664 ~g~~~~A~~~~~~m~~~ 680 (820)
.|++++|...++...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888888777654
No 128
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.00 E-value=9.2e-06 Score=53.68 Aligned_cols=35 Identities=29% Similarity=0.527 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCc
Q 003439 311 VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 345 (820)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 345 (820)
++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 129
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.95 E-value=0.00032 Score=67.70 Aligned_cols=148 Identities=14% Similarity=0.089 Sum_probs=65.1
Q ss_pred HHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 003439 490 VDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 566 (820)
Q Consensus 490 i~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 566 (820)
-..|.-.|+-+.+..+..... ..|...-+..+....+.|++.+|+..|++.... -+||..+|+.+.-+|.+.|+.+
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChh
Confidence 333444444444444444322 222222333444445555555555555555442 1223345555555555555555
Q ss_pred HHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 003439 567 EGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR--PDASIWGALLGACRIHGNMELGAVASD 641 (820)
Q Consensus 567 ~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~ 641 (820)
+|..-|.+..+ +.| ++..++.|.-.|.-.|+++.|..++...... .|..+-..|.-+....|++++|+.+..
T Consensus 152 ~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 152 EARRAYRQALE---LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHHHHHH---hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 55555544442 222 2233444444444445555555544444111 133344444444444455544444433
No 130
>PLN02789 farnesyltranstransferase
Probab=97.95 E-value=0.00069 Score=70.52 Aligned_cols=186 Identities=10% Similarity=0.113 Sum_probs=134.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcC
Q 003439 489 LVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHG-QGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSG 563 (820)
Q Consensus 489 li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g 563 (820)
+-..+.+.++.++|..+.+++. +.+...|+.....+...| ++++++..++++.+. .|+. .+|..-...+.+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcC
Confidence 3334455667778888877765 334455776666666667 679999999999984 5544 46665555556666
Q ss_pred C--HHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCh--
Q 003439 564 L--VSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIH---GNM-- 633 (820)
Q Consensus 564 ~--~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~-- 633 (820)
. .+++..+++.+.+ +.| +...|+...-++.+.|++++|++.++++ ...| |..+|+.....+... |..
T Consensus 121 ~~~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 121 PDAANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred chhhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccc
Confidence 5 3677888877774 344 5678888888899999999999999988 3334 566898888776654 222
Q ss_pred --hHHHHHHHHHhccCCCCcchHHhHHHHhhhc----CCcchHHHHHHHHHh
Q 003439 634 --ELGAVASDRLFEVDSENVGYYVLMSNIYANV----GKWEGVDEVRSLARD 679 (820)
Q Consensus 634 --~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~----g~~~~A~~~~~~m~~ 679 (820)
+.++....++++++|+|.++|..+..++... ++..+|.++.....+
T Consensus 198 ~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 198 MRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred cHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 4677788899999999999999999999873 445567777666443
No 131
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.92 E-value=0.025 Score=56.64 Aligned_cols=367 Identities=14% Similarity=0.139 Sum_probs=192.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHH---HhhhcCCChHHHHHHHHHHHHhCCCccHHHH-HHHHHHHHc
Q 003439 216 ISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL---PVCARSDNILSGLLIHLYIVKHGLEFNLFVS-NNLINMYAK 291 (820)
Q Consensus 216 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll---~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~ 291 (820)
-+.+.-+|++..|+.-|....+- |+..|.++. ..|...|+-..|..=+..+++. .||-... -.-...+.+
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 34445555555555555555432 233333332 2233334444444444444332 3332211 111234567
Q ss_pred cCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHH
Q 003439 292 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 371 (820)
Q Consensus 292 ~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~ 371 (820)
.|.++.|..=|+.+.+.+.. +|...+|.+-+....+ .......+......|+...+......+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQE------HWVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred cccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHHH------HHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 78888888777776553321 1111111111100000 011222333444556666666666666
Q ss_pred HHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhc---CCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCc
Q 003439 372 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG---LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 448 (820)
Q Consensus 372 ~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~ 448 (820)
++.. +-|...+..-..+|...|.+..|..-++. +...++...--+-..+-..|+.+.++...++-.+ +.||.
T Consensus 182 lEi~--~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdH 256 (504)
T KOG0624|consen 182 LEIQ--PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDH 256 (504)
T ss_pred HhcC--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcch
Confidence 5553 66777778888888888888888755543 3445666666666777778888888888887766 77776
Q ss_pred ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCc----cc---cchHH
Q 003439 449 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS----VP---WNAII 521 (820)
Q Consensus 449 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~----~~---~~~li 521 (820)
...-..- ..+.+..+.++.|.+ ....+++.++.+-.+...+.++ +. +..+-
T Consensus 257 K~Cf~~Y------KklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c 314 (504)
T KOG0624|consen 257 KLCFPFY------KKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLC 314 (504)
T ss_pred hhHHHHH------HHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheee
Confidence 4321111 111122222222211 2234555555555554442222 22 34455
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCC
Q 003439 522 SCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 600 (820)
Q Consensus 522 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 600 (820)
.+|...|++.+|++.-.+.++ +.|| ..++.--..||.-...++.|+.=|+...+ +.++..- .|. -
T Consensus 315 ~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e---~n~sn~~--------~re-G 380 (504)
T KOG0624|consen 315 TCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE---LNESNTR--------ARE-G 380 (504)
T ss_pred ecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh---cCcccHH--------HHH-H
Confidence 677778889999998888888 6776 55777788888888888999888887763 3443211 111 2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh-ccCCCCc
Q 003439 601 LGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLF-EVDSENV 651 (820)
Q Consensus 601 ~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~ 651 (820)
++.|.++.+..+ +.|- | -++ +-.++-.-.+-.++|+++- +-.|+|.
T Consensus 381 le~Akrlkkqs~-kRDY--Y-KIL-GVkRnAsKqEI~KAYRKlAqkWHPDNF 427 (504)
T KOG0624|consen 381 LERAKRLKKQSG-KRDY--Y-KIL-GVKRNASKQEITKAYRKLAQKWHPDNF 427 (504)
T ss_pred HHHHHHHHHHhc-cchH--H-HHh-hhcccccHHHHHHHHHHHHHhcCCccc
Confidence 345555555543 2221 1 122 2234444556666666653 4667654
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.91 E-value=0.00086 Score=77.06 Aligned_cols=142 Identities=10% Similarity=0.063 Sum_probs=114.6
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHH
Q 003439 479 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVS 554 (820)
Q Consensus 479 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ 554 (820)
+..+...+-.|.......|+.++|+.+++... +.+...+..++.++.+.+++++|+..+++... ..|+.. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 45568888889999999999999999999887 34455688889999999999999999999999 578775 5556
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 003439 555 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM--PVRPDASIWGALL 624 (820)
Q Consensus 555 ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m--~~~p~~~~~~~ll 624 (820)
+..++.+.|.+++|..+|+++... ..-+...+..+..++-+.|+.++|...|++. ...|....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 667888999999999999999852 2223678888999999999999999999987 2344444555444
No 133
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.91 E-value=1.8e-05 Score=51.93 Aligned_cols=34 Identities=29% Similarity=0.570 Sum_probs=30.5
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 003439 209 SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM 242 (820)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 242 (820)
+.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999998887
No 134
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.89 E-value=0.079 Score=60.05 Aligned_cols=210 Identities=10% Similarity=0.081 Sum_probs=116.9
Q ss_pred CChhHHHHHhccCCC--CCcccHHHHHHHH--HhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHH
Q 003439 192 GLANVARKLFDDMPV--RDSGSWNAMISGY--CQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIH 267 (820)
Q Consensus 192 g~~~~A~~~f~~m~~--~~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 267 (820)
+++..|.+..+...+ || ..|...+.++ .+.|+.++|..+++.....+.. |..|...+-..|...+..+++..++
T Consensus 23 ~qfkkal~~~~kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHH
Confidence 455555555555432 22 2344444443 4678888888777777655444 6777777777778888888888888
Q ss_pred HHHHHhCCCccHHHHHHHHHHHHccCCHH----HHHHHHhccCCCCchHHHHHHHHHHh-CCChh---------hHHHHH
Q 003439 268 LYIVKHGLEFNLFVSNNLINMYAKFGMMR----HALRVFDQMMERDVVSWNSIIAAYEQ-SNDPI---------TAHGFF 333 (820)
Q Consensus 268 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~----~A~~~f~~m~~~d~~~~~~li~~~~~-~g~~~---------~A~~~~ 333 (820)
++..+. .|+......+..+|++.+++. .|.+++...+++--.-|+.+ +.+.+ ...++ -|.+.+
T Consensus 101 e~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~-Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 101 ERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI-SLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH-HHHHHhccCCcccccchhHHHHHHHH
Confidence 887765 455667777777788877664 46777776666555556543 33322 22222 234445
Q ss_pred HHHHHcC-CCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhc
Q 003439 334 TTMQQAG-IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG 406 (820)
Q Consensus 334 ~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 406 (820)
+.+.+.+ -.-+..-...-+..+...|..++|..++..-........+...-+--++++.+++++.+-.++-.+
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 5554443 111111222223334455666666666532222111333444455566666666666655444433
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.86 E-value=0.00018 Score=76.34 Aligned_cols=123 Identities=12% Similarity=0.124 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 003439 551 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACR 628 (820)
Q Consensus 551 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~ 628 (820)
...+|+..+...+++++|.++|+++.+. .|+ ....|+..|...++-.+|.+++++. ...| |...+......|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445666777788889999999888754 354 4455777777788888888888876 3334 5556666677788
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHH
Q 003439 629 IHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLAR 678 (820)
Q Consensus 629 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 678 (820)
..++++.|..+++++.++.|++...|..|+.+|...|++++|....+.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999888775
No 136
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.86 E-value=0.0012 Score=76.55 Aligned_cols=132 Identities=9% Similarity=0.084 Sum_probs=81.0
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 595 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 595 (820)
+..+..+|.+.|+.++|..+|+++++. .|+ ....+.+...++.. ++++|.+++...... |
T Consensus 119 l~~LA~~Ydk~g~~~ka~~~yer~L~~--D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----------------~ 179 (906)
T PRK14720 119 LRTLAEAYAKLNENKKLKGVWERLVKA--DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR----------------F 179 (906)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----------------H
Confidence 344556666666666666666666663 343 34555566666666 666666666555432 1
Q ss_pred HHcCCHHHHHHHHHhC----------------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 003439 596 GRAGHLGMAHNFIQNM----------------------PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 653 (820)
Q Consensus 596 ~~~g~~~eA~~~~~~m----------------------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 653 (820)
....++.++.+++.++ ....-..+|--+-.-|...+++++++.+++.+++.+|.|..+
T Consensus 180 i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a 259 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKA 259 (906)
T ss_pred HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhh
Confidence 2222333333333222 222233455555677788889999999999999999999988
Q ss_pred HHhHHHHhhhcCCcch
Q 003439 654 YVLMSNIYANVGKWEG 669 (820)
Q Consensus 654 ~~~l~~~y~~~g~~~~ 669 (820)
..-|+..|. +.+.+
T Consensus 260 ~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 260 REELIRFYK--EKYKD 273 (906)
T ss_pred HHHHHHHHH--HHccC
Confidence 888888776 44444
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.83 E-value=0.00041 Score=62.84 Aligned_cols=114 Identities=14% Similarity=0.104 Sum_probs=91.2
Q ss_pred HHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 003439 536 FFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PV 613 (820)
Q Consensus 536 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~ 613 (820)
.+++.+. ..|+. .....+...+...|++++|.+.|+.+... -+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666 56654 45666777888999999999999888753 2336678888999999999999999999877 34
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 003439 614 RP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 653 (820)
Q Consensus 614 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 653 (820)
.| +...|..+...+...|+.+.|...++++++++|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 45 46688888899999999999999999999999977653
No 138
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.79 E-value=0.0041 Score=72.28 Aligned_cols=175 Identities=11% Similarity=0.079 Sum_probs=101.2
Q ss_pred CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHH
Q 003439 308 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 387 (820)
Q Consensus 308 ~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~l 387 (820)
.+...|..|+..|...+++++|.++.+...+. .|+...+- -.+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~y-----------------------------------y~~ 71 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISAL-----------------------------------YIS 71 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehH-----------------------------------HHH
Confidence 35567888888888888888888888865543 34433321 111
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHH
Q 003439 388 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 467 (820)
Q Consensus 388 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a 467 (820)
...|.+.++.+++..+ .++.......++.-...+...|.. ..-+...+..+..+|.+.|+.+++
T Consensus 72 G~l~~q~~~~~~~~lv-------------~~l~~~~~~~~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka 135 (906)
T PRK14720 72 GILSLSRRPLNDSNLL-------------NLIDSFSQNLKWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKL 135 (906)
T ss_pred HHHHHhhcchhhhhhh-------------hhhhhcccccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHH
Confidence 1133333333333222 222223333333222223333333 222333555666667777777777
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003439 468 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 547 (820)
Q Consensus 468 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 547 (820)
..+++++++.. +.|+.+.|-+...|+.. ++++|.+++.+.. .-|...+++.++.++|.++.. ..|
T Consensus 136 ~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~--~~~ 200 (906)
T PRK14720 136 KGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFIKKKQYVGIEEIWSKLVH--YNS 200 (906)
T ss_pred HHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHHhhhcchHHHHHHHHHHh--cCc
Confidence 77777777766 44677777777778777 8888877776543 335666677777777777777 345
Q ss_pred Chh
Q 003439 548 DHI 550 (820)
Q Consensus 548 ~~~ 550 (820)
+.+
T Consensus 201 ~d~ 203 (906)
T PRK14720 201 DDF 203 (906)
T ss_pred ccc
Confidence 443
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.79 E-value=3.7e-05 Score=50.35 Aligned_cols=34 Identities=29% Similarity=0.642 Sum_probs=31.8
Q ss_pred chHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCC
Q 003439 310 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQP 343 (820)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 343 (820)
+.+||.+|.+|++.|+++.|+++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999987
No 140
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.72 E-value=4.2e-05 Score=48.83 Aligned_cols=31 Identities=48% Similarity=0.942 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 003439 210 GSWNAMISGYCQSGNAVEALDILDEMRLEGV 240 (820)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 240 (820)
++||+||++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999988764
No 141
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.70 E-value=0.11 Score=55.61 Aligned_cols=210 Identities=12% Similarity=0.118 Sum_probs=139.6
Q ss_pred hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhhCC----CCCccccchHHHHHHhcCChHHHHHHH
Q 003439 465 RQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG---RIDDAMSLFYQVP----RSSSVPWNAIISCHGIHGQGDKALNFF 537 (820)
Q Consensus 465 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~ 537 (820)
+++..+++..+..-...+..+|.++.+---..- ..+.....+++.. ..-...|-.++..-.+..-...|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 445555555554333334444444433211111 1333344444433 223345888888888888899999999
Q ss_pred HHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---CC
Q 003439 538 RQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM---PV 613 (820)
Q Consensus 538 ~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m---~~ 613 (820)
.+..+.+..+ +.....+++.-++ +++.+-|.++|+.=..++|-.| .-..+.++-+.+-++-..|..+|++. .+
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999998888 5556777777655 5788999999987666655443 34567889999999999999999987 23
Q ss_pred CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC----cchHHhHHHHhhhcCCcchHHHHHHHH
Q 003439 614 RPD--ASIWGALLGACRIHGNMELGAVASDRLFEVDSEN----VGYYVLMSNIYANVGKWEGVDEVRSLA 677 (820)
Q Consensus 614 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~y~~~g~~~~A~~~~~~m 677 (820)
.|| ..+|..+|.--..-||+..+.++-++....-|.+ ...-..+.+.|.=.+.+..-..-++.|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 454 3499999999999999999999998887655522 122345666777777766544434333
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.69 E-value=0.00085 Score=71.25 Aligned_cols=126 Identities=11% Similarity=0.102 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcC
Q 003439 485 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSG 563 (820)
Q Consensus 485 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g 563 (820)
...+|+..+...++++.|.++|+++.+.+...+..++..+...++-.+|++++++.+.. .| |...+..-...|.+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 34456666777888999999999988777766777888888888888999999988874 45 4445555556688889
Q ss_pred CHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 003439 564 LVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFGRAGHLGMAHNFIQNMPVRP 615 (820)
Q Consensus 564 ~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~m~~~p 615 (820)
+++.|+++.+++. ...|+. .+|..|...|.+.|++++|+..++.+|..|
T Consensus 249 ~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999988887 456754 588999999999999999999998887543
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.67 E-value=0.00091 Score=61.35 Aligned_cols=115 Identities=11% Similarity=0.097 Sum_probs=61.4
Q ss_pred cCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhH
Q 003439 562 SGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDA----SIWGALLGACRIHGNMEL 635 (820)
Q Consensus 562 ~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~ 635 (820)
.++...+.+.++.+...++-.| .....-.+...+...|++++|.+.|+.. ...||. ..+..|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5555556555655554422221 1122223345555666666666666655 112332 234445555666677777
Q ss_pred HHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHH
Q 003439 636 GAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 677 (820)
Q Consensus 636 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 677 (820)
|+..++.. .-.+-.+..+..++++|.+.|++++|...|+..
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66666542 222224445556777777777777777776653
No 144
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.66 E-value=0.00032 Score=74.84 Aligned_cols=95 Identities=9% Similarity=0.058 Sum_probs=42.8
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChh
Q 003439 558 ACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNME 634 (820)
Q Consensus 558 a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~ 634 (820)
.+...|++++|++.|..+.+ ..| +...|..+..+|.+.|++++|+..++++ .+.|+ ...|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 33444555555555554442 122 2334444444444455555555444444 22332 234444444444445555
Q ss_pred HHHHHHHHHhccCCCCcchHH
Q 003439 635 LGAVASDRLFEVDSENVGYYV 655 (820)
Q Consensus 635 ~a~~~~~~~~~~~p~~~~~~~ 655 (820)
+|+..++++++++|+++....
T Consensus 88 eA~~~~~~al~l~P~~~~~~~ 108 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTK 108 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHH
Confidence 555555555555554444333
No 145
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.63 E-value=0.016 Score=59.01 Aligned_cols=246 Identities=15% Similarity=0.168 Sum_probs=150.0
Q ss_pred cCChHHHHHHHHhhhhcCCCCCCc--ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 003439 425 NGLASEAIEVFQMMEECNEINPNQ--GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 502 (820)
Q Consensus 425 ~g~~~~A~~l~~~m~~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 502 (820)
.|++++|.+-|+.|.. .|.. .-+..+.-...+.|+.+.|+++-+..-..-. .-.....+.+...+..|+++.|
T Consensus 133 eG~~~~Ar~kfeAMl~----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 133 EGDYEDARKKFEAMLD----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred cCchHHHHHHHHHHhc----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHH
Confidence 3555555555555544 1111 1122333333455666666666555443321 1234556667777777777777
Q ss_pred HHHHhhCC-----CCCccc--cchHHHHHH---hcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHH
Q 003439 503 MSLFYQVP-----RSSSVP--WNAIISCHG---IHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRY 571 (820)
Q Consensus 503 ~~~~~~~~-----~~~~~~--~~~li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~ 571 (820)
+++.+.-. .+|+.- --.|+.+-+ -..+...|...-.+..+ +.||-+ .-..-..++.+.|++.++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 77776543 333221 122222211 13356666666666655 788876 444456789999999999999
Q ss_pred HHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHH----HHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 003439 572 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH----NFIQNMPVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEV 646 (820)
Q Consensus 572 ~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~----~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 646 (820)
++.+.+ ..|.+..+.. ..+.|.|+-.... +-++. ++|| ..+..++..+-...|++..|..-.+.+...
T Consensus 286 lE~aWK---~ePHP~ia~l--Y~~ar~gdta~dRlkRa~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 286 LETAWK---AEPHPDIALL--YVRARSGDTALDRLKRAKKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHh---cCCChHHHHH--HHHhcCCCcHHHHHHHHHHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 999884 4666655433 3445666432211 11233 3554 446677778888999999999999999999
Q ss_pred CCCCcchHHhHHHHhhhc-CCcchHHHHHHHHHhCCCCcCCc
Q 003439 647 DSENVGYYVLMSNIYANV-GKWEGVDEVRSLARDRGLKKTPG 687 (820)
Q Consensus 647 ~p~~~~~~~~l~~~y~~~-g~~~~A~~~~~~m~~~~~~~~~~ 687 (820)
.| ..+.|.+|+++-... |+-.++...+.+.... ..+|.
T Consensus 359 ~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~A--PrdPa 397 (531)
T COG3898 359 AP-RESAYLLLADIEEAETGDQGKVRQWLAQAVKA--PRDPA 397 (531)
T ss_pred Cc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC--CCCCc
Confidence 99 577889999987655 9888888877766543 34454
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.62 E-value=0.00037 Score=57.93 Aligned_cols=92 Identities=22% Similarity=0.290 Sum_probs=69.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcC
Q 003439 588 YGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG 665 (820)
Q Consensus 588 ~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 665 (820)
+..+...+...|++++|.+.+++. ...|+ ..+|..+...+...|+++.|...++++....|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445566677778888888877765 33343 3567777777788888888888888888888877777888888888888
Q ss_pred CcchHHHHHHHHHh
Q 003439 666 KWEGVDEVRSLARD 679 (820)
Q Consensus 666 ~~~~A~~~~~~m~~ 679 (820)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888777654
No 147
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.61 E-value=9.2e-05 Score=57.95 Aligned_cols=65 Identities=22% Similarity=0.228 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcC-CcchHHHHHHHHHhC
Q 003439 616 DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG-KWEGVDEVRSLARDR 680 (820)
Q Consensus 616 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-~~~~A~~~~~~m~~~ 680 (820)
++.+|..+...+...|++++|+..|+++++++|+++..+..++.+|...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999999999999999999999 799999999887654
No 148
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.56 E-value=0.00062 Score=67.09 Aligned_cols=105 Identities=16% Similarity=0.146 Sum_probs=76.4
Q ss_pred HHhcCCHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhH
Q 003439 559 CSHSGLVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDAS-IWGALLGACRIHGNMEL 635 (820)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~ 635 (820)
..+.+++.+|+..|...+ .+.|+- .-|..-..+|.+.|.++.|.+--+.. .+.|... +|..|.-+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 456677777777777766 456543 44444567788888888887766655 5666655 88999999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHhHHHHhhhcCC
Q 003439 636 GAVASDRLFEVDSENVGYYVLMSNIYANVGK 666 (820)
Q Consensus 636 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 666 (820)
|++.|+++++++|++.+....|-.+--+.+.
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 9999999999999888766666554444433
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.55 E-value=6.9e-05 Score=61.35 Aligned_cols=78 Identities=15% Similarity=0.231 Sum_probs=49.9
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHH
Q 003439 598 AGHLGMAHNFIQNM-PVRP---DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEV 673 (820)
Q Consensus 598 ~g~~~eA~~~~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~ 673 (820)
.|++++|+.+++++ ...| +...|-.+...+.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35566666666555 1122 344555567777777777777777777 666666666666777777777888777777
Q ss_pred HHH
Q 003439 674 RSL 676 (820)
Q Consensus 674 ~~~ 676 (820)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 150
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.55 E-value=0.00034 Score=68.87 Aligned_cols=88 Identities=16% Similarity=0.152 Sum_probs=78.6
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchH
Q 003439 593 DLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGV 670 (820)
Q Consensus 593 ~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 670 (820)
+-+.+.+++++|+..|.++ .+.| |.+.|..=..+|.+.|.++.|++-.+.++.++|....+|..|+-+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4456789999999999887 6666 5667777888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 003439 671 DEVRSLARDR 680 (820)
Q Consensus 671 ~~~~~~m~~~ 680 (820)
.+.|++..+.
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 9999887654
No 151
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.54 E-value=9.2e-05 Score=47.22 Aligned_cols=31 Identities=32% Similarity=0.508 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHhCCChhhHHHHHHHHHHcCC
Q 003439 311 VSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 341 (820)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 341 (820)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788899999999999999999999888764
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.52 E-value=0.0013 Score=57.95 Aligned_cols=101 Identities=8% Similarity=0.038 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 003439 552 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD----ASIWGALLG 625 (820)
Q Consensus 552 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~ 625 (820)
+..+...+...|++++|.+.|..+.+.+.-.| ....+..+..++.+.|++++|.+.++++ ...|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444555556666666666665554321111 1233444556666666666666666554 22222 335556666
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCcc
Q 003439 626 ACRIHGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 626 ~~~~~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
.+...|+.+.|...++++++..|++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 666667777777777777776666544
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.51 E-value=0.0008 Score=59.20 Aligned_cols=96 Identities=16% Similarity=0.018 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---cchHHhH
Q 003439 586 KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSEN---VGYYVLM 657 (820)
Q Consensus 586 ~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 657 (820)
.++..++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|...+++++...|++ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35667788899999999999999887 33343 3467778889999999999999999999998875 4567889
Q ss_pred HHHhhhcCCcchHHHHHHHHHhCC
Q 003439 658 SNIYANVGKWEGVDEVRSLARDRG 681 (820)
Q Consensus 658 ~~~y~~~g~~~~A~~~~~~m~~~~ 681 (820)
+.+|.+.|++++|...++.+.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999988763
No 154
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.0092 Score=57.84 Aligned_cols=147 Identities=11% Similarity=0.027 Sum_probs=101.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH----HH
Q 003439 522 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF----GR 597 (820)
Q Consensus 522 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~----~~ 597 (820)
..|...|++++|++..+... +......=...+.+..+++-|.+.++.|.+ +. +..+.+.|..++ .-
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---id-ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ---ID-EDATLTQLAQAWVKLATG 185 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cc-hHHHHHHHHHHHHHHhcc
Confidence 34667777777777766511 111111122334556677788887777763 22 233444444444 34
Q ss_pred cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHH-HHH
Q 003439 598 AGHLGMAHNFIQNM--PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVD-EVR 674 (820)
Q Consensus 598 ~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~-~~~ 674 (820)
.+.+.+|.-+|++| +..|+..+.+.+...+...|++++|+.+++.++..+++++.+...++-.--..|.-.++. +..
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 56788999999998 367888899999999999999999999999999999999999888887777788876665 344
Q ss_pred HHHH
Q 003439 675 SLAR 678 (820)
Q Consensus 675 ~~m~ 678 (820)
.+.+
T Consensus 266 ~QLk 269 (299)
T KOG3081|consen 266 SQLK 269 (299)
T ss_pred HHHH
Confidence 4443
No 155
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.50 E-value=0.0025 Score=71.06 Aligned_cols=140 Identities=12% Similarity=0.036 Sum_probs=65.7
Q ss_pred CCCccccchHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcC--------CHHHHHHHHHHhH
Q 003439 511 RSSSVPWNAIISCHGIH-----GQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSG--------LVSEGQRYFHMMQ 576 (820)
Q Consensus 511 ~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g--------~~~~a~~~~~~m~ 576 (820)
..|...|...+.+.... ++..+|+.+|++.++ ..||.. .+..+..++.... ++..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 44555566666554322 236688999999988 678753 4444433322110 1112222222211
Q ss_pred HhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 003439 577 EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 577 ~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
.......+...|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.+++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 10011112234444444444445555555555544 34444445555555555555555555555555555554443
No 156
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.50 E-value=0.0041 Score=57.02 Aligned_cols=115 Identities=17% Similarity=0.137 Sum_probs=73.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh--hHHHHHHHHHHHcC
Q 003439 526 IHGQGDKALNFFRQMLDEGVRPDH----ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL--KHYGCMVDLFGRAG 599 (820)
Q Consensus 526 ~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~--~~~~~li~~~~~~g 599 (820)
..++...+...++++... .|+. .....+...+...|++++|...|+..... ...|.. ...-.|...+...|
T Consensus 23 ~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~ 99 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQG 99 (145)
T ss_pred HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcC
Confidence 366777777777777774 3333 23333445677778888888888777754 222221 23344566777788
Q ss_pred CHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003439 600 HLGMAHNFIQNMPVR-PDASIWGALLGACRIHGNMELGAVASDRL 643 (820)
Q Consensus 600 ~~~eA~~~~~~m~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 643 (820)
++++|+..++..+.. .....+..+...+...|+.++|+..|+++
T Consensus 100 ~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 100 QYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred CHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 888888888765322 23446666777788888888888888765
No 157
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.43 E-value=0.00026 Score=54.60 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=45.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 623 LLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 623 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+...+...|++++|+..++++++..|+++..+..++.++...|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456777888888888888888888888888888888888888888888888877654
No 158
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.43 E-value=0.073 Score=55.39 Aligned_cols=120 Identities=15% Similarity=0.167 Sum_probs=86.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 003439 487 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 566 (820)
Q Consensus 487 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 566 (820)
+..|.-+...|+...|.++-.+..-+|..-|...+.+++..+++++-.++... +-.++-|..++.+|.+.|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 34455566778888999998888888888899999999999998876665432 223477888889999999999
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003439 567 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 626 (820)
Q Consensus 567 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~ 626 (820)
+|..+...+ .+..-+.+|.++|++.+|.+.--+.+ |...+..+..-
T Consensus 255 eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~ 300 (319)
T PF04840_consen 255 EASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKR 300 (319)
T ss_pred HHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 988887542 12456788889999998887765543 44444444433
No 159
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.0068 Score=58.24 Aligned_cols=182 Identities=15% Similarity=0.145 Sum_probs=136.2
Q ss_pred cCCHHHHHHHHhhCC---C-----CCcc-ccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH-HHHHHhcCCH
Q 003439 496 CGRIDDAMSLFYQVP---R-----SSSV-PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL-LTACSHSGLV 565 (820)
Q Consensus 496 ~g~~~~A~~~~~~~~---~-----~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~ 565 (820)
..+.++..+++.++. + ++.. .|..++-+....|+.+.|...++++... + |+..-...+ .--+...|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 457888888888776 1 1111 1444556667789999999999999886 3 665433222 2235567999
Q ss_pred HHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003439 566 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM--PVRPDASIWGALLGACRIHGNMELGAVASDRL 643 (820)
Q Consensus 566 ~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 643 (820)
++|.++++.+.++ . +.|..+|---+-++-..|+--+|++-+.+. .+..|...|.-|...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d-d-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED-D-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc-C-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999865 2 335556666666666777777887766554 45678999999999999999999999999999
Q ss_pred hccCCCCcchHHhHHHHhhhcCCcc---hHHHHHHHHHhCC
Q 003439 644 FEVDSENVGYYVLMSNIYANVGKWE---GVDEVRSLARDRG 681 (820)
Q Consensus 644 ~~~~p~~~~~~~~l~~~y~~~g~~~---~A~~~~~~m~~~~ 681 (820)
+-+.|.++-.+..+++++...|-.+ -|.+++.+..+..
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999988887644 5667777776653
No 160
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.014 Score=56.67 Aligned_cols=154 Identities=14% Similarity=0.086 Sum_probs=87.1
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHH
Q 003439 491 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH----SGLVS 566 (820)
Q Consensus 491 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~ 566 (820)
..|...|++++|.+.......-+....+ +..+.+..+.+-|.+.+++|.+- -+..|.+-|.+++.+ .+.+.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred HHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhh
Confidence 3456666666666666553222222211 23344555666777777777662 244555555555443 34567
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHH
Q 003439 567 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM--PVRPDASIWGALLGACRIHGNM-ELGAVASDRL 643 (820)
Q Consensus 567 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~ 643 (820)
+|.-+|++|.++ ..|+..+.+.+..+....|++++|..+++.. ....++.+...++-.-...|.. +--.+...++
T Consensus 191 dAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 191 DAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred hHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 777777777642 4566666666666666777777777777766 2223444555555444444443 4445556666
Q ss_pred hccCCCCc
Q 003439 644 FEVDSENV 651 (820)
Q Consensus 644 ~~~~p~~~ 651 (820)
....|..+
T Consensus 269 k~~~p~h~ 276 (299)
T KOG3081|consen 269 KLSHPEHP 276 (299)
T ss_pred HhcCCcch
Confidence 66666543
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.36 E-value=0.0039 Score=59.11 Aligned_cols=126 Identities=13% Similarity=0.179 Sum_probs=64.7
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPD--HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVD 593 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~ 593 (820)
+..+...+...|++++|+..|++.++....|+ ...+..+...+.+.|++++|...+.+..+. .| +...+..+..
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~ 114 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 45555555556666666666666655322221 134555555556666666666665555432 23 2333444444
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCC
Q 003439 594 LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 666 (820)
Q Consensus 594 ~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 666 (820)
+|...|+...+..-++.. ...+++|.+.++++++++|++ |..+...+...|+
T Consensus 115 ~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 555555444433222211 012567888888888888876 4444444444443
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.35 E-value=0.001 Score=62.80 Aligned_cols=94 Identities=13% Similarity=-0.124 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHH
Q 003439 585 LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSN 659 (820)
Q Consensus 585 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 659 (820)
...|..++..+...|++++|...+++. ...|+ ..+|..+...+...|+.++|+..++++++++|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 345566667777788888888888776 23232 3478889999999999999999999999999999888888888
Q ss_pred Hhh-------hcCCcchHHHHHHHHH
Q 003439 660 IYA-------NVGKWEGVDEVRSLAR 678 (820)
Q Consensus 660 ~y~-------~~g~~~~A~~~~~~m~ 678 (820)
+|. ..|++++|...+++..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 888 7888887766665543
No 163
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.30 E-value=0.00074 Score=52.00 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=50.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 003439 591 MVDLFGRAGHLGMAHNFIQNM-PVRPDA-SIWGALLGACRIHGNMELGAVASDRLFEVDSENV 651 (820)
Q Consensus 591 li~~~~~~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 651 (820)
+...+.+.|++++|.+.|++. ...|+. ..|..+...+...|++++|+..++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778899999999999887 556754 4999999999999999999999999999999864
No 164
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.014 Score=56.20 Aligned_cols=192 Identities=13% Similarity=0.177 Sum_probs=144.0
Q ss_pred cCChhHHHHHHHHHHH---hC-CCCchh-HHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchH---HHHHHhcCChHH
Q 003439 461 VGALRQGIKIHARVIK---NC-LCFDVF-VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI---ISCHGIHGQGDK 532 (820)
Q Consensus 461 ~~~~~~a~~i~~~~~~---~g-~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~ 532 (820)
..+.++..+++..++. .| ..++.. +|..++-+..-+|+.+.|...++.+...-.-++... ..-+-..|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 3577888888877754 34 555554 455556666778999999999988763333333222 123456899999
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 003439 533 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM- 611 (820)
Q Consensus 533 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m- 611 (820)
|+++++..++.. +.|.+++..=+...-..|.--+|++-+....+. +.-|.+.|.-+.+.|...|++++|.-.++++
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 999999999975 446678887777778888888999988888764 5678899999999999999999999999998
Q ss_pred CCCC-CHHHHHHHHHHHHhcC---ChhHHHHHHHHHhccCCCCcchHH
Q 003439 612 PVRP-DASIWGALLGACRIHG---NMELGAVASDRLFEVDSENVGYYV 655 (820)
Q Consensus 612 ~~~p-~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~ 655 (820)
-..| ++..+..+...+...| +++.+.+.|++++++.|.+...+.
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 3455 4456677777765554 778999999999999996554443
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.29 E-value=0.0016 Score=61.69 Aligned_cols=80 Identities=13% Similarity=0.033 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHh
Q 003439 587 HYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 661 (820)
Q Consensus 587 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 661 (820)
.+..+...|.+.|++++|...+++. ...|+ ...|..+...+...|+++.|+..++++++..|++...+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4555555666666666666666655 22222 347777888888888888888888888888888888888888888
Q ss_pred hhcCC
Q 003439 662 ANVGK 666 (820)
Q Consensus 662 ~~~g~ 666 (820)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 87776
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.26 E-value=0.0028 Score=67.60 Aligned_cols=100 Identities=15% Similarity=0.130 Sum_probs=80.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHc
Q 003439 521 ISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRA 598 (820)
Q Consensus 521 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~ 598 (820)
...+...|++++|++.|+++++ ..|+ ...|..+..++...|++++|+..++.+.. +.| +...|..+..+|...
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 4556778999999999999999 4665 45788888899999999999999999874 455 567888899999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 003439 599 GHLGMAHNFIQNM-PVRPDASIWGALLG 625 (820)
Q Consensus 599 g~~~eA~~~~~~m-~~~p~~~~~~~ll~ 625 (820)
|++++|...|++. .+.|+......++.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999987 56666554444443
No 167
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.24 E-value=0.028 Score=60.76 Aligned_cols=166 Identities=15% Similarity=0.205 Sum_probs=90.2
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHH
Q 003439 389 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 468 (820)
Q Consensus 389 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 468 (820)
+.++-.|.+.+|.++|.+ +|.-..|+++|..|+- --..+-+...|..++-+
T Consensus 640 ~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRM-----------FD~aQE~~~~g~~~eKK 690 (1081)
T KOG1538|consen 640 DVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRM-----------FDYAQEFLGSGDPKEKK 690 (1081)
T ss_pred HHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHH-----------HHHHHHHhhcCChHHHH
Confidence 344556677777777643 4666667766666543 01122233444444444
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003439 469 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 548 (820)
Q Consensus 469 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 548 (820)
.+.+.-.+.. -++.-=.+...|+...|+.++|..+. ..+|-.+-++++-+++-. .+
T Consensus 691 mL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~----~e 746 (1081)
T KOG1538|consen 691 MLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDK----AE 746 (1081)
T ss_pred HHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcch----hh
Confidence 3333221110 01111123445666677777776554 445555555555544432 23
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCH
Q 003439 549 HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP-VRPDA 617 (820)
Q Consensus 549 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~-~~p~~ 617 (820)
..+...+..-+.+...+.-|-++|..|-.. ..++++....|+++||..+-++.| +.||+
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCccccccc
Confidence 345555555555666677778888776522 356777778888888888888874 44443
No 168
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0038 Score=64.05 Aligned_cols=88 Identities=16% Similarity=0.158 Sum_probs=73.5
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCC
Q 003439 593 DLFGRAGHLGMAHNFIQNM-PVRP-----DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 666 (820)
Q Consensus 593 ~~~~~~g~~~eA~~~~~~m-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 666 (820)
+...+.|++.+|.+.+.+. .+.| +...|.....+..+.|+.++|+.-.+.+++++|.-...|..-++.+...++
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 4566889999999999876 4444 444566666677889999999999999999999888899999999999999
Q ss_pred cchHHHHHHHHHhC
Q 003439 667 WEGVDEVRSLARDR 680 (820)
Q Consensus 667 ~~~A~~~~~~m~~~ 680 (820)
|++|.+.+++..+.
T Consensus 337 ~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887654
No 169
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.20 E-value=0.0046 Score=51.13 Aligned_cols=89 Identities=19% Similarity=0.201 Sum_probs=43.3
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 003439 557 TACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNM 633 (820)
Q Consensus 557 ~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 633 (820)
..+...|++++|..+++.+.+. .| +...+..+...|...|++++|.+.+++. ...| +..+|..+...+...|+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 3334444444444444444321 12 1233444444455555555555555443 1222 223555566666666666
Q ss_pred hHHHHHHHHHhccCC
Q 003439 634 ELGAVASDRLFEVDS 648 (820)
Q Consensus 634 ~~a~~~~~~~~~~~p 648 (820)
+.|...++++++..|
T Consensus 85 ~~a~~~~~~~~~~~~ 99 (100)
T cd00189 85 EEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHccCC
Confidence 666666666666555
No 170
>PRK15331 chaperone protein SicA; Provisional
Probab=97.18 E-value=0.013 Score=53.15 Aligned_cols=89 Identities=11% Similarity=0.078 Sum_probs=77.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcc
Q 003439 591 MVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWE 668 (820)
Q Consensus 591 li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 668 (820)
...-+-..|++++|..+|+-+ -..| +..-|..|...|...++++.|+..|..+..++++|+..+...+..|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344455789999999999876 2222 45578999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh
Q 003439 669 GVDEVRSLARD 679 (820)
Q Consensus 669 ~A~~~~~~m~~ 679 (820)
+|...|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999988775
No 171
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.14 E-value=0.00061 Score=53.03 Aligned_cols=53 Identities=11% Similarity=0.255 Sum_probs=39.8
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 628 RIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 628 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
...|++++|+..++++++.+|++......++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35677788888888888888888888888888888888888888777766544
No 172
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.11 E-value=0.37 Score=50.22 Aligned_cols=105 Identities=20% Similarity=0.201 Sum_probs=83.9
Q ss_pred hHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCCh
Q 003439 385 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGAL 464 (820)
Q Consensus 385 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~ 464 (820)
+..|.-+...|+...|.++-.+..-+|...|-..|.+|+..++|++-.++-.. +-.++-|..++.+|.+.|..
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHHCCCH
Confidence 44456667789999999999999999999999999999999999987765432 12358889999999999999
Q ss_pred hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 003439 465 RQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 506 (820)
Q Consensus 465 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 506 (820)
.+|..+... ..+..-+.+|.++|++.+|.+.-
T Consensus 254 ~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 254 KEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHH
Confidence 988887665 12256788999999999987653
No 173
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.66 Score=51.88 Aligned_cols=361 Identities=11% Similarity=0.054 Sum_probs=186.7
Q ss_pred HHhCCChhHHHHHHHHH--------HHCCCCCChHHHHh-----HHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHH
Q 003439 219 YCQSGNAVEALDILDEM--------RLEGVSMDPITVAS-----ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL 285 (820)
Q Consensus 219 ~~~~g~~~~A~~l~~~m--------~~~g~~p~~~t~~~-----ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 285 (820)
+.+.-++++-+.+.++. ..-|+..+..-|.. +|+-+...+.+..|.++-..+-..-..- ..++...
T Consensus 399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~W 477 (829)
T KOG2280|consen 399 SLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEW 477 (829)
T ss_pred ccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHH
Confidence 34444555544444333 34566666655544 3556666777777877766653221111 5677777
Q ss_pred HHHHHccCC---HHHHHHHHhccCC--CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCC----CCCcchHHHHHHHHH
Q 003439 286 INMYAKFGM---MRHALRVFDQMME--RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI----QPDLLTLVSLTSIVA 356 (820)
Q Consensus 286 i~~y~~~g~---~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~pd~~t~~~ll~a~~ 356 (820)
..-+.+..+ -+.+..+-+++.. .+-++|..+..--.+.|+++-|..+++.=...+- -.+..-+...+.-+.
T Consensus 478 a~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kai 557 (829)
T KOG2280|consen 478 ARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAI 557 (829)
T ss_pred HHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHH
Confidence 777776633 3334444445544 4667888888888889999988887764222111 112233444455555
Q ss_pred hcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCC-CchHHHHHHHHHHHcCChHHHHHHH
Q 003439 357 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVF 435 (820)
Q Consensus 357 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~ 435 (820)
..|+.+...++.-.+.+.- . .-+...-..+...|..++.+.... |.. . +..+-+.++-.+++.-|
T Consensus 558 es~d~~Li~~Vllhlk~~~----~------~s~l~~~l~~~p~a~~lY~~~~r~~~~~---~-l~d~y~q~dn~~~~a~~ 623 (829)
T KOG2280|consen 558 ESGDTDLIIQVLLHLKNKL----N------RSSLFMTLRNQPLALSLYRQFMRHQDRA---T-LYDFYNQDDNHQALASF 623 (829)
T ss_pred hcCCchhHHHHHHHHHHHH----H------HHHHHHHHHhchhhhHHHHHHHHhhchh---h-hhhhhhcccchhhhhhh
Confidence 5666555555444433321 0 000000111222233333222111 100 0 11111222222222222
Q ss_pred H--hhhhcCCCCCCcccHhhHHHHhhccCChhHHHH----------HHHHHH-HhCCCCchhHHHHHHHHHHhcCCHHHH
Q 003439 436 Q--MMEECNEINPNQGTYVSILPAYSHVGALRQGIK----------IHARVI-KNCLCFDVFVATCLVDMYGKCGRIDDA 502 (820)
Q Consensus 436 ~--~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~----------i~~~~~-~~g~~~~~~~~~~li~~y~~~g~~~~A 502 (820)
. .......+.+-.......-++|++......+.+ +.+.+. +.|....-.+.+--+.-+...|+..+|
T Consensus 624 ~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a 703 (829)
T KOG2280|consen 624 HLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRA 703 (829)
T ss_pred hhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHH
Confidence 1 100000011222223334445555444222111 111121 123222222333444455667888888
Q ss_pred HHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCC
Q 003439 503 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 582 (820)
Q Consensus 503 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~ 582 (820)
.++-.+..-+|-..|---+.+++..+++++-.++-+.+. + ++-|.-...+|.+.|+.++|.+++.+.. |..
T Consensus 704 ~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk-----s-PIGy~PFVe~c~~~~n~~EA~KYiprv~---~l~ 774 (829)
T KOG2280|consen 704 EQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK-----S-PIGYLPFVEACLKQGNKDEAKKYIPRVG---GLQ 774 (829)
T ss_pred HHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC-----C-CCCchhHHHHHHhcccHHHHhhhhhccC---ChH
Confidence 888888888888888888888888888887666554432 2 4566677888888888888888875432 221
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 003439 583 PHLKHYGCMVDLFGRAGHLGMAHNFIQN 610 (820)
Q Consensus 583 p~~~~~~~li~~~~~~g~~~eA~~~~~~ 610 (820)
-.+.+|.+.|++.+|.++--+
T Consensus 775 -------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 775 -------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred -------HHHHHHHHhccHHHHHHHHHH
Confidence 467788888888888776543
No 174
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0027 Score=63.12 Aligned_cols=100 Identities=11% Similarity=0.035 Sum_probs=84.6
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---ChhHHHHHHHHHhccCCCCcchHHhH
Q 003439 583 PHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHG---NMELGAVASDRLFEVDSENVGYYVLM 657 (820)
Q Consensus 583 p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~~l 657 (820)
-|.+.|--|...|.+.|+.+.|..-|.+. .+.| +...+..+..++.... +..++..++++++.++|.|......|
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 36788999999999999999999999887 4444 4557777777755443 45689999999999999999999999
Q ss_pred HHHhhhcCCcchHHHHHHHHHhCCC
Q 003439 658 SNIYANVGKWEGVDEVRSLARDRGL 682 (820)
Q Consensus 658 ~~~y~~~g~~~~A~~~~~~m~~~~~ 682 (820)
+..+...|++.+|...++.|.+...
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998754
No 175
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.03 E-value=0.0012 Score=52.18 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=50.5
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCC
Q 003439 624 LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 681 (820)
Q Consensus 624 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 681 (820)
...|.+.+++++|.++++++++++|+++..+...+.+|...|++++|.+.++...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567888999999999999999999999999999999999999999999998887653
No 176
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.99 E-value=0.06 Score=49.30 Aligned_cols=148 Identities=11% Similarity=0.069 Sum_probs=109.4
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCC-CCChhHHHHHHHHHHHcCCHHH
Q 003439 525 GIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI-KPHLKHYGCMVDLFGRAGHLGM 603 (820)
Q Consensus 525 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~-~p~~~~~~~li~~~~~~g~~~e 603 (820)
.+.=+++..++-..+-.+ +.|....-..|..+....|+..||...|++... |+ .-|....-.+..+....++..+
T Consensus 67 ~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 67 QQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAA 142 (251)
T ss_pred HHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHH
Confidence 333444444443333333 567777777888999999999999999988774 54 3456667777778888899999
Q ss_pred HHHHHHhC-C-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHH
Q 003439 604 AHNFIQNM-P-----VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 677 (820)
Q Consensus 604 A~~~~~~m-~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 677 (820)
|...+++. . -.||.. ..+...+...|..+.|+..|+.++..-| ++..-...+.++.++|+.++|..-+...
T Consensus 143 a~~tLe~l~e~~pa~r~pd~~--Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPDGH--LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhhcCCccCCCCch--HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 99988876 2 234443 3566778899999999999999999888 5666777888899999999887655554
Q ss_pred Hh
Q 003439 678 RD 679 (820)
Q Consensus 678 ~~ 679 (820)
.+
T Consensus 220 ~d 221 (251)
T COG4700 220 VD 221 (251)
T ss_pred HH
Confidence 43
No 177
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.99 E-value=0.15 Score=55.37 Aligned_cols=203 Identities=13% Similarity=0.126 Sum_probs=97.9
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcc
Q 003439 267 HLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLL 346 (820)
Q Consensus 267 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 346 (820)
++.+.+.|-.|+.... ...++-.|++.+|.++|.+ +|.-..|+++|..|+--
T Consensus 623 L~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF------- 674 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF------- 674 (1081)
T ss_pred HHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH-------
Confidence 3445556655655432 3445556888888887765 45555666666665321
Q ss_pred hHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcC
Q 003439 347 TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 426 (820)
Q Consensus 347 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 426 (820)
-...-+...|+.++-+.+...-.. ...+..--.+-..++...|+.++|..+. ..+|
T Consensus 675 ---D~aQE~~~~g~~~eKKmL~RKRA~---WAr~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~g 730 (1081)
T KOG1538|consen 675 ---DYAQEFLGSGDPKEKKMLIRKRAD---WARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHG 730 (1081)
T ss_pred ---HHHHHHhhcCChHHHHHHHHHHHH---HhhhcCCcHHHHHHhhcccchhhhhhhh------------------hccc
Confidence 011112222222222222211111 1111111133445555566666665443 2233
Q ss_pred ChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 003439 427 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 506 (820)
Q Consensus 427 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 506 (820)
-.+-++++=+++.. .+..+...+-..+-+...+..|-++|..|-+. .+++++....+++++|..+-
T Consensus 731 W~d~lidI~rkld~-----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalA 796 (1081)
T KOG1538|consen 731 WVDMLIDIARKLDK-----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALA 796 (1081)
T ss_pred HHHHHHHHHhhcch-----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhh
Confidence 33334444333322 22333444444445556666677776655332 35677777788888888887
Q ss_pred hhCCCCCccccchHHHHHHhcCChHHHHH
Q 003439 507 YQVPRSSSVPWNAIISCHGIHGQGDKALN 535 (820)
Q Consensus 507 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 535 (820)
++.++--...|---..-++...++++|.+
T Consensus 797 e~hPe~~~dVy~pyaqwLAE~DrFeEAqk 825 (1081)
T KOG1538|consen 797 EKHPEFKDDVYMPYAQWLAENDRFEEAQK 825 (1081)
T ss_pred hhCccccccccchHHHHhhhhhhHHHHHH
Confidence 77774333333333344444555555443
No 178
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.98 E-value=0.011 Score=60.72 Aligned_cols=134 Identities=13% Similarity=0.154 Sum_probs=95.7
Q ss_pred ccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH-HHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHH
Q 003439 516 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA-CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 594 (820)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 594 (820)
.|-.++....+.+..+.|..+|.+.++.+ .-+...|...... +...++.+.|.++|+...+.+ ..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 46666777777777888888888887532 2233445444444 333577777999999988764 4456678888999
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 003439 595 FGRAGHLGMAHNFIQNM-PVRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 595 ~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
+.+.|+.+.|..+|++. ..-|. ..+|...+.--.++|+++....+.+++.+.-|++..
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 99999999999999987 22233 349999999999999999999999999998886443
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.97 E-value=0.01 Score=55.94 Aligned_cols=60 Identities=10% Similarity=0.114 Sum_probs=27.2
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPD--HITFVSLLTACSHSGLVSEGQRYFHMMQ 576 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 576 (820)
|..+...+...|++++|+..|++.+.....|. ..++..+...+.+.|++++|.+.++...
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444455555555555555544211111 1234444444555555555555554443
No 180
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.95 E-value=0.0024 Score=52.11 Aligned_cols=80 Identities=13% Similarity=0.226 Sum_probs=44.1
Q ss_pred cCChHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHHcCCHHHH
Q 003439 527 HGQGDKALNFFRQMLDEGVR-PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMA 604 (820)
Q Consensus 527 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~eA 604 (820)
.|++++|+.+|+++.+.... |+...+..+..++.+.|++++|.++++. . ...|. ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 46677777777777764221 1233444466677777777777777765 2 22222 22223345666666777777
Q ss_pred HHHHHh
Q 003439 605 HNFIQN 610 (820)
Q Consensus 605 ~~~~~~ 610 (820)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666654
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.93 E-value=0.012 Score=65.60 Aligned_cols=134 Identities=12% Similarity=0.086 Sum_probs=97.8
Q ss_pred CCCChhHHHHHHHHHHhc-----CCHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHHHc--------CCHHHHHHHHHh
Q 003439 545 VRPDHITFVSLLTACSHS-----GLVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFGRA--------GHLGMAHNFIQN 610 (820)
Q Consensus 545 ~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~--------g~~~eA~~~~~~ 610 (820)
.+.|...|...+.+.... +..++|..+|++.. .+.|+- ..|..+..+|... ++++.+.+..++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai---~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL---KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 455667888888875442 23778999999888 457874 3444443333221 234455555555
Q ss_pred C---C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCC
Q 003439 611 M---P-VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 682 (820)
Q Consensus 611 m---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 682 (820)
. + ...+..+|.++.-.....|++++|...++++++++| +...|..++.+|...|+.++|.+.++++.....
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3 1 233556788887777788999999999999999999 578999999999999999999999999876643
No 182
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.91 E-value=0.0019 Score=50.37 Aligned_cols=65 Identities=14% Similarity=0.199 Sum_probs=52.8
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-ChhHHHHHHHHHhccCC
Q 003439 584 HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHG-NMELGAVASDRLFEVDS 648 (820)
Q Consensus 584 ~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 648 (820)
+...|..+...+.+.|++++|++.|++. ...|+ ..+|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777788888888888888888876 45565 448888999999999 79999999999999887
No 183
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.88 E-value=0.00042 Score=45.01 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=30.4
Q ss_pred HHHHhccCCCCcchHHhHHHHhhhcCCcchHH
Q 003439 640 SDRLFEVDSENVGYYVLMSNIYANVGKWEGVD 671 (820)
Q Consensus 640 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~ 671 (820)
|+++++++|+++.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68899999999999999999999999999986
No 184
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.85 E-value=1.3 Score=50.65 Aligned_cols=153 Identities=10% Similarity=0.043 Sum_probs=85.1
Q ss_pred cchHHHHHHhcCChH---HHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 003439 517 WNAIISCHGIHGQGD---KALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 592 (820)
Q Consensus 517 ~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 592 (820)
-|.|+..+.+.++.. +|+-+++.-.. ..| |..+-..+|..|+-.|-+..|.+.|..+.-+ .|+.|..-|- +.
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt--~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~ 514 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLT--KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IF 514 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HH
Confidence 567778888877765 55555555555 234 4456667888888889999999988888655 6666543332 23
Q ss_pred HHHHHcCCHHHHHHHHHhC-CC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc------hHHhHHHHh
Q 003439 593 DLFGRAGHLGMAHNFIQNM-PV----RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG------YYVLMSNIY 661 (820)
Q Consensus 593 ~~~~~~g~~~eA~~~~~~m-~~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~y 661 (820)
..+.-.|++..+...++.. .+ ..+.. -+|..-.++|.+..-.+...---.+. ++. .-....+..
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~---eyI~~AYr~g~ySkI~em~~fr~rL~--~S~q~~a~~VE~~~l~ll 589 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKFYDSSLKETP---EYIALAYRRGAYSKIPEMLAFRDRLM--HSLQKWACRVENLQLSLL 589 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHHHhhhhhhhH---HHHHHHHHcCchhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 4445566766666665543 10 11111 12333345666655444322111111 111 112445566
Q ss_pred hhcCCcchHHHHHHHHH
Q 003439 662 ANVGKWEGVDEVRSLAR 678 (820)
Q Consensus 662 ~~~g~~~~A~~~~~~m~ 678 (820)
...++.++-......|.
T Consensus 590 ~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 590 CNADRGTQLLKLLESMK 606 (932)
T ss_pred HhCCcHHHHHHHHhccc
Confidence 66677766666666665
No 185
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.85 E-value=0.012 Score=49.31 Aligned_cols=81 Identities=12% Similarity=0.062 Sum_probs=68.1
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCChHHHHhHHHhhhcCC--------ChHHHHHHHHHHHHhCCCccHHH
Q 003439 211 SWNAMISGYCQSGNAVEALDILDEMRLEGV-SMDPITVASILPVCARSD--------NILSGLLIHLYIVKHGLEFNLFV 281 (820)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 281 (820)
+-...|.-+..++++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|+..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344567777778999999999999999999 999999999999887653 34567788999999999999999
Q ss_pred HHHHHHHHHc
Q 003439 282 SNNLINMYAK 291 (820)
Q Consensus 282 ~~~li~~y~~ 291 (820)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.82 E-value=0.0017 Score=50.41 Aligned_cols=61 Identities=18% Similarity=0.276 Sum_probs=29.5
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhH
Q 003439 597 RAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLM 657 (820)
Q Consensus 597 ~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 657 (820)
..|++++|.++|+++ ...| +..++..+...|...|++++|...++++...+|+++..+..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 344555555555544 2223 333444555555555555555555555555555544443333
No 187
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.79 E-value=0.11 Score=53.68 Aligned_cols=63 Identities=16% Similarity=0.139 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC---CC-----CCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003439 587 HYGCMVDLFGRAGHLGMAHNFIQNMP---VR-----PDAS-IWGALLGACRIHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 587 ~~~~li~~~~~~g~~~eA~~~~~~m~---~~-----p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 649 (820)
.+..+..++.+.|++++|.++|++.. .+ .+.. .+-..+-.+...||...|...+++..+.+|.
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34445566667777777777776541 11 1111 1112222344567777888888887777764
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.75 E-value=0.032 Score=51.07 Aligned_cols=107 Identities=17% Similarity=0.157 Sum_probs=93.0
Q ss_pred HhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC-
Q 003439 574 MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM---PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE- 649 (820)
Q Consensus 574 ~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~- 649 (820)
+..+...+.|+..+--.|...+.+.|+..||...|++. .+..|......+.++....++..+|...++.+.+..|.
T Consensus 78 ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 78 EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence 33344467888888889999999999999999999987 45668888889999999999999999999999998875
Q ss_pred -CcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 650 -NVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 650 -~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.+.....++..|...|+.++|+..|+...+.
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 5667788999999999999999999998875
No 189
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.69 E-value=0.95 Score=46.69 Aligned_cols=155 Identities=12% Similarity=0.175 Sum_probs=79.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhcc-CChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 003439 416 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV-GALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 494 (820)
Q Consensus 416 ~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~-~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 494 (820)
...+..|...|++..|-..+.++-+ .|... |+++.|.+.|..+.+ .|.
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~lA~----------------~ye~~~~d~e~Ai~~Y~~A~~---------------~y~ 146 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKELAE----------------IYEEQLGDYEKAIEYYQKAAE---------------LYE 146 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHH----------------HHCCTT--HHHHHHHHHHHHH---------------HHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHH----------------HHHHHcCCHHHHHHHHHHHHH---------------HHH
Confidence 3345666777777777666665544 34444 666777666655443 233
Q ss_pred hcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----hh-HHHHHHHHHHhcCCHHHH
Q 003439 495 KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-----HI-TFVSLLTACSHSGLVSEG 568 (820)
Q Consensus 495 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~-t~~~ll~a~~~~g~~~~a 568 (820)
..|....+.+++ ..+...+.+.|++++|+++|++....-...+ .. .|...+-.+...|++..|
T Consensus 147 ~e~~~~~a~~~~-----------~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A 215 (282)
T PF14938_consen 147 QEGSPHSAAECL-----------LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAA 215 (282)
T ss_dssp HTT-HHHHHHHH-----------HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HCCChhhHHHHH-----------HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHH
Confidence 333333333332 2345566777777777777777765432211 11 223333355667788888
Q ss_pred HHHHHHhHHhh-CCCCC--hhHHHHHHHHHHH--cCCHHHHHHHHHhCC
Q 003439 569 QRYFHMMQEEF-GIKPH--LKHYGCMVDLFGR--AGHLGMAHNFIQNMP 612 (820)
Q Consensus 569 ~~~~~~m~~~~-g~~p~--~~~~~~li~~~~~--~g~~~eA~~~~~~m~ 612 (820)
.+.++...... ++..+ ......|++++-. ...+++|..-|+.+.
T Consensus 216 ~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 216 RKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 88877765221 12112 2334455555543 235666666666663
No 190
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.67 E-value=0.032 Score=50.47 Aligned_cols=95 Identities=11% Similarity=0.023 Sum_probs=71.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhc
Q 003439 487 TCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHS 562 (820)
Q Consensus 487 ~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~ 562 (820)
-++...+...|++++|.++|+-+. ..+..-|-.|..++-..|++++|+..|..... +.|| ...+-.+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHc
Confidence 344555667888888888888766 34445588888888888999999999988888 4564 45777788888888
Q ss_pred CCHHHHHHHHHHhHHhhCCCC
Q 003439 563 GLVSEGQRYFHMMQEEFGIKP 583 (820)
Q Consensus 563 g~~~~a~~~~~~m~~~~g~~p 583 (820)
|+.+.|++.|+......+-.|
T Consensus 117 G~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 117 DNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred CCHHHHHHHHHHHHHHhccCh
Confidence 999999998887775544333
No 191
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.62 E-value=0.0051 Score=65.05 Aligned_cols=61 Identities=7% Similarity=-0.075 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 003439 586 KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDA----SIWGALLGACRIHGNMELGAVASDRLFEV 646 (820)
Q Consensus 586 ~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 646 (820)
..++.+..+|.+.|++++|...|++. .+.|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444444555555555555555442 334432 13444555555555555555555555444
No 192
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.62 E-value=0.022 Score=60.97 Aligned_cols=114 Identities=12% Similarity=0.069 Sum_probs=50.9
Q ss_pred CCcccHhhHHHHhhccCChhHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCccccch
Q 003439 446 PNQGTYVSILPAYSHVGALRQGIKIHARVIKN--CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP----RSSSVPWNA 519 (820)
Q Consensus 446 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~ 519 (820)
.+...+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+++..++..=. -+|..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34445555555555555555555554444332 111122233345555555554444444443322 234444444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 003439 520 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 559 (820)
Q Consensus 520 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 559 (820)
|+..+.+.|++..|.++..+|...+...+..|+..-+.+|
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 4444444444444444444444444444444444333333
No 193
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.62 E-value=0.015 Score=58.70 Aligned_cols=88 Identities=14% Similarity=-0.002 Sum_probs=46.8
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---cchHHhHHHHhhhc
Q 003439 593 DLFGRAGHLGMAHNFIQNM-PVRPDA----SIWGALLGACRIHGNMELGAVASDRLFEVDSEN---VGYYVLMSNIYANV 664 (820)
Q Consensus 593 ~~~~~~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~ 664 (820)
..+.+.|++++|...|+.. ...|+. .++--+...|...|++++|...|+++++..|++ +.++..++.+|...
T Consensus 151 ~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~ 230 (263)
T PRK10803 151 ALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDK 230 (263)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHc
Confidence 3333445555555555444 122221 244445556666666666666666666655553 33334456666666
Q ss_pred CCcchHHHHHHHHHhC
Q 003439 665 GKWEGVDEVRSLARDR 680 (820)
Q Consensus 665 g~~~~A~~~~~~m~~~ 680 (820)
|++++|.++++...+.
T Consensus 231 g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 231 GDTAKAKAVYQQVIKK 246 (263)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6666666666665543
No 194
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.48 E-value=0.041 Score=47.93 Aligned_cols=91 Identities=15% Similarity=0.200 Sum_probs=67.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHH
Q 003439 520 IISCHGIHGQGDKALNFFRQMLDEGVRPDH--ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFG 596 (820)
Q Consensus 520 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~ 596 (820)
+..++-..|+.++|+.+|++....|..... ..+..+.+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455677889999999999999998876653 4677788899999999999999998876532211 1122233445677
Q ss_pred HcCCHHHHHHHHHh
Q 003439 597 RAGHLGMAHNFIQN 610 (820)
Q Consensus 597 ~~g~~~eA~~~~~~ 610 (820)
..|+.+||.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88999998887654
No 195
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.48 E-value=1.5 Score=46.36 Aligned_cols=82 Identities=13% Similarity=0.130 Sum_probs=50.2
Q ss_pred cHHHHHHHH--HhCCChhHHHHHHHHHHHC--CCCC-----------ChHHH-HhHHHhhhcCCChHHHHHHHHHHHHhC
Q 003439 211 SWNAMISGY--CQSGNAVEALDILDEMRLE--GVSM-----------DPITV-ASILPVCARSDNILSGLLIHLYIVKHG 274 (820)
Q Consensus 211 ~~~~li~~~--~~~g~~~~A~~l~~~m~~~--g~~p-----------~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~g 274 (820)
.|-.+..++ -+.+.+.+|++.+..-.++ +-.| +.+.+ +..+..+...|.+.+|+.+++.+...=
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 344444433 3567777777777665543 2221 11122 334566678888888888888776644
Q ss_pred C----CccHHHHHHHHHHHHcc
Q 003439 275 L----EFNLFVSNNLINMYAKF 292 (820)
Q Consensus 275 ~----~~~~~~~~~li~~y~~~ 292 (820)
+ .-+..+||.++-++++.
T Consensus 159 lkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 159 LKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred hhhhhcccHHHHHHHHHHHhHH
Confidence 3 46788888877777653
No 196
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.47 E-value=0.03 Score=46.97 Aligned_cols=77 Identities=9% Similarity=0.151 Sum_probs=58.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcC--------CHHHHHHHHHHhHHhhCCCCChhHHHH
Q 003439 520 IISCHGIHGQGDKALNFFRQMLDEGV-RPDHITFVSLLTACSHSG--------LVSEGQRYFHMMQEEFGIKPHLKHYGC 590 (820)
Q Consensus 520 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~g~~p~~~~~~~ 590 (820)
.|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+..+.. .+-+.+.+++.|... +++|+.++|+.
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etYni 109 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETYNI 109 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHHHH
Confidence 44455556888889999999999999 889999999998876543 344567777778755 78888888888
Q ss_pred HHHHHHH
Q 003439 591 MVDLFGR 597 (820)
Q Consensus 591 li~~~~~ 597 (820)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8776654
No 197
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.44 E-value=0.041 Score=58.97 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=27.9
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhC
Q 003439 315 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 375 (820)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 375 (820)
++|+.|.+.|..++++.+++.=...|+-||.+|++.+|..+.+.|++..|.++...|+..+
T Consensus 108 a~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe 168 (429)
T PF10037_consen 108 ALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQE 168 (429)
T ss_pred HHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 4444444444444444444444444444444444444444444444444444444444443
No 198
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.42 E-value=0.0047 Score=43.05 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHH
Q 003439 619 IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSN 659 (820)
Q Consensus 619 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 659 (820)
+|..+..+|...|++++|+++++++++.+|+|+..+..|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 67889999999999999999999999999999998887764
No 199
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.38 E-value=0.028 Score=57.86 Aligned_cols=129 Identities=9% Similarity=0.107 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHH-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 003439 550 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR-AGHLGMAHNFIQNM--PVRPDASIWGALLGA 626 (820)
Q Consensus 550 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~-~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~ 626 (820)
.+|..++....+.+..+.|..+|....+. -..+..+|-....+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788889999999999999999999732 22344566666666445 56666699999987 345577899999999
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCc---chHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 627 CRIHGNMELGAVASDRLFEVDSENV---GYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 627 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+...|+.+.|+.+|++++..-|.+. ..|...++.-.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998776554 47778888889999999999999888764
No 200
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.36 E-value=0.26 Score=51.80 Aligned_cols=160 Identities=18% Similarity=0.150 Sum_probs=99.6
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCC---Cccc----cchHHHHHHh---cCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 003439 489 LVDMYGKCGRIDDAMSLFYQVPRS---SSVP----WNAIISCHGI---HGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 558 (820)
Q Consensus 489 li~~y~~~g~~~~A~~~~~~~~~~---~~~~----~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 558 (820)
++-.|-...+++...++.+.+... ++.. -....-++.+ .|+.++|++++..+....-.++..||..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 333466777777777777777632 1111 1122334445 78889999998886666667777788777776
Q ss_pred HHh---------cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHH----HHHHHH---Hh-C----CCC--C
Q 003439 559 CSH---------SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG----MAHNFI---QN-M----PVR--P 615 (820)
Q Consensus 559 ~~~---------~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~----eA~~~~---~~-m----~~~--p 615 (820)
|-. ....++|.+.|.+. +.+.|+..+--.++-++...|... +..++- .. . ... .
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 532 22466777777643 356676655444555555555322 222222 11 1 122 3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 003439 616 DASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 651 (820)
Q Consensus 616 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 651 (820)
|--.+.+++.++.-.||.+.|.+++++++.+.|+.-
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 344556889999999999999999999999987654
No 201
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.31 E-value=0.0097 Score=46.92 Aligned_cols=64 Identities=14% Similarity=0.222 Sum_probs=51.3
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHh
Q 003439 593 DLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVL 656 (820)
Q Consensus 593 ~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 656 (820)
..|.+.+++++|.+.++.+ ...|+ ...|......+...|++++|...++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 4677888888888888887 45554 4578888888999999999999999999999977665443
No 202
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.29 E-value=0.028 Score=53.30 Aligned_cols=97 Identities=15% Similarity=0.207 Sum_probs=67.5
Q ss_pred HHHhccC--CCCCcccHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcC-------------
Q 003439 198 RKLFDDM--PVRDSGSWNAMISGYCQS-----GNAVEALDILDEMRLEGVSMDPITVASILPVCARS------------- 257 (820)
Q Consensus 198 ~~~f~~m--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 257 (820)
...|+.. ..+|..+|..+|..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 345666666666666543 55666666777777888888888888888776542
Q ss_pred ---CChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCC
Q 003439 258 ---DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 294 (820)
Q Consensus 258 ---~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 294 (820)
.+-+-|..++++|...|+-||..++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1345678888888888888888888888888866554
No 203
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.026 Score=58.48 Aligned_cols=64 Identities=11% Similarity=0.056 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 617 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 617 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
..+++.|...|.+.+++..|+....++++++|+|.-+...-+.+|...|.++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3466677778889999999999999999999999999999999999999999999999999865
No 204
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.18 E-value=0.044 Score=47.71 Aligned_cols=86 Identities=14% Similarity=0.020 Sum_probs=54.1
Q ss_pred HHHHHHcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC---CcchHHhHHHHhhh
Q 003439 592 VDLFGRAGHLGMAHNFIQNM---PVRPD--ASIWGALLGACRIHGNMELGAVASDRLFEVDSE---NVGYYVLMSNIYAN 663 (820)
Q Consensus 592 i~~~~~~g~~~eA~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~ 663 (820)
..++-..|+.++|..+|++. +.... ...+-.+.+.+...|++++|..++++.++-.|+ +....+.++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34455566666666666654 11111 225556667777777777777777777776666 55556666777777
Q ss_pred cCCcchHHHHHHHH
Q 003439 664 VGKWEGVDEVRSLA 677 (820)
Q Consensus 664 ~g~~~~A~~~~~~m 677 (820)
.|+.+||.+.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 78887777665443
No 205
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.18 E-value=0.23 Score=49.75 Aligned_cols=169 Identities=12% Similarity=0.073 Sum_probs=99.5
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCccc------cchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHh-
Q 003439 491 DMYGKCGRIDDAMSLFYQVPRSSSVP------WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH--ITFVSLLTACSH- 561 (820)
Q Consensus 491 ~~y~~~g~~~~A~~~~~~~~~~~~~~------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~- 561 (820)
..+.+.|++++|.+.|+++....+.+ .-.++.+|.+.+++++|+..|++.++ ..|+. +-+...+.+.+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHHHHHHHhhh
Confidence 33455677777777777776322222 12345666778888888888888887 34543 344444444331
Q ss_pred -cC---------------C---HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH
Q 003439 562 -SG---------------L---VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 622 (820)
Q Consensus 562 -~g---------------~---~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ 622 (820)
.+ + ..+|.+.|+.+.+++ |+ ..-..+|...+..+...--..- -.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~~~la~~e-~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLKDRLAKYE-LS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHHHHHHHHH-HH
Confidence 11 1 223444444444332 32 2233444443333310000000 12
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCC---cchHHhHHHHhhhcCCcchHHHHHHHHH
Q 003439 623 LLGACRIHGNMELGAVASDRLFEVDSEN---VGYYVLMSNIYANVGKWEGVDEVRSLAR 678 (820)
Q Consensus 623 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 678 (820)
...-|.+.|.+.-|+.-++.+++--|+. ..+...+.++|...|..++|..+.+...
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3445788899999999999999877764 3456678899999999999998877654
No 206
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.14 E-value=0.024 Score=53.74 Aligned_cols=73 Identities=19% Similarity=0.323 Sum_probs=56.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc----------------CCHHHHHHHHHHhHHhhCCCCChhHHHH
Q 003439 527 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS----------------GLVSEGQRYFHMMQEEFGIKPHLKHYGC 590 (820)
Q Consensus 527 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----------------g~~~~a~~~~~~m~~~~g~~p~~~~~~~ 590 (820)
.|..+=....++.|.+-|+.-|..+|+.||+.+=+. .+.+-|++++++|.. +|+.||.+++..
T Consensus 65 RGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ 143 (228)
T PF06239_consen 65 RGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMEN-NGVMPDKETEQM 143 (228)
T ss_pred cChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHH-cCCCCcHHHHHH
Confidence 466677777778888888888888888888776442 234568889999974 499999999999
Q ss_pred HHHHHHHcCC
Q 003439 591 MVDLFGRAGH 600 (820)
Q Consensus 591 li~~~~~~g~ 600 (820)
+++.+++.+.
T Consensus 144 ll~iFG~~s~ 153 (228)
T PF06239_consen 144 LLNIFGRKSH 153 (228)
T ss_pred HHHHhccccH
Confidence 9998887764
No 207
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.10 E-value=3.1 Score=46.24 Aligned_cols=225 Identities=18% Similarity=0.180 Sum_probs=101.5
Q ss_pred cCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHH
Q 003439 377 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 456 (820)
Q Consensus 377 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~ 456 (820)
++.|....-.+.+|+.+.|.-++|.+.|-+-..| .+-+..+...+++.+|.++-++.+- |...|+ |.
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p-----kaAv~tCv~LnQW~~avelaq~~~l-----~qv~tl---ia 914 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP-----KAAVHTCVELNQWGEAVELAQRFQL-----PQVQTL---IA 914 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhccCc-----HHHHHHHHHHHHHHHHHHHHHhccc-----hhHHHH---HH
Confidence 4555666666777777777777776666544333 1233445555666666666554332 222221 11
Q ss_pred HhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CccccchHHHHHHh----cCC
Q 003439 457 AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS---SSVPWNAIISCHGI----HGQ 529 (820)
Q Consensus 457 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~----~g~ 529 (820)
..|-++++ +. .+ ---|.++.+.|+.=+|-+++.+|.++ .-++|-.+=..|.- ..+
T Consensus 915 --------k~aaqll~---~~------~~-~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~ 976 (1189)
T KOG2041|consen 915 --------KQAAQLLA---DA------NH-MEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVEN 976 (1189)
T ss_pred --------HHHHHHHh---hc------ch-HHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 01111111 11 01 11356677777777777777777622 22333332222221 123
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 003439 530 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 609 (820)
Q Consensus 530 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~ 609 (820)
..++++-.++....|...|... +...|...++-++.+...+ -....|+-.|..--...|+++.|++.--
T Consensus 977 h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr----gAEAyHFmilAQrql~eg~v~~Al~Tal 1045 (1189)
T KOG2041|consen 977 HRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR----GAEAYHFMILAQRQLFEGRVKDALQTAL 1045 (1189)
T ss_pred HHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh----hHHHHHHHHHHHHHHHhchHHHHHHHHh
Confidence 3444444444444454333221 1222333333333332211 1123444445555566788888876533
Q ss_pred hC----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003439 610 NM----PVRPDASIWGALLGACRIHGNMELGAVASDRL 643 (820)
Q Consensus 610 ~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 643 (820)
.+ .+-|-..+|..|.-+-+....+...-++|-++
T Consensus 1046 ~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1046 ILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred hhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 33 12344445554443333333333344444443
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.37 Score=46.85 Aligned_cols=167 Identities=11% Similarity=0.081 Sum_probs=112.0
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhcCCC--CCchHH--------HHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhh
Q 003439 384 GNAVVDMYAKLGIINSACAVFEGLPV--KDVISW--------NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVS 453 (820)
Q Consensus 384 ~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~--------~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ 453 (820)
+++|...|.-..-+++-...|+.-.. ..+..| +.++..+...|.+.-.+.++++..+ ....-+......
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~-~~~e~~p~L~s~ 217 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIK-YYPEQEPQLLSG 217 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHH-hCCcccHHHHHH
Confidence 46677777666666666666654332 223333 4566666667788888888888877 544556666777
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHH-----HHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHH
Q 003439 454 ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC-----LVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHG 525 (820)
Q Consensus 454 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~-----li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 525 (820)
+.+.-.+.|+.+.|...++...+..-..+....+. ....|.-..++..|...|.+++ ..|++.-|.-.-+..
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 78888888999999999988776433333333333 3344666778888888888877 344555666666666
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhHHH
Q 003439 526 IHGQGDKALNFFRQMLDEGVRPDHITFV 553 (820)
Q Consensus 526 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 553 (820)
-.|+..+|++..+.|.+ ..|...+-+
T Consensus 298 Ylg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHHhc--cCCccchhh
Confidence 67888999999999988 456554433
No 209
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.00 E-value=0.042 Score=47.10 Aligned_cols=89 Identities=18% Similarity=0.197 Sum_probs=73.0
Q ss_pred HHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc----hHHhHHHHhhhcCCc
Q 003439 594 LFGRAGHLGMAHNFIQNM-PVR-PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG----YYVLMSNIYANVGKW 667 (820)
Q Consensus 594 ~~~~~g~~~eA~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~y~~~g~~ 667 (820)
+++..|++++|++.|.+. .+- .....||.-..+++-+|+.++|..-+++++++.-+... .|+.-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 567789999999998876 333 36778999999999999999999999999997643322 577788899999999
Q ss_pred chHHHHHHHHHhCCC
Q 003439 668 EGVDEVRSLARDRGL 682 (820)
Q Consensus 668 ~~A~~~~~~m~~~~~ 682 (820)
+.|+.-|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999999999887764
No 210
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.97 E-value=2.4 Score=43.88 Aligned_cols=212 Identities=14% Similarity=0.134 Sum_probs=117.1
Q ss_pred hcCCHHHHHHHHhcCCCC---CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccH--hhHHHHhhc---cCCh
Q 003439 393 KLGIINSACAVFEGLPVK---DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY--VSILPAYSH---VGAL 464 (820)
Q Consensus 393 ~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~--~~ll~a~~~---~~~~ 464 (820)
+.|..+.|+..-+..... -.-.|.+.+...+..|+++.|+++.+.-+...-+.+|..-- ..++.+-+. ..+.
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 456666666555443322 23456778888888888888888888766644455554321 122222111 1234
Q ss_pred hHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHH-
Q 003439 465 RQGIKIHARVIKNCLCFDVFVA-TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD- 542 (820)
Q Consensus 465 ~~a~~i~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~- 542 (820)
..|+..-.+..| +.||..-. -.-...|.+.|++.++-.+++.+-+....+--..+-.+.+.|+. ++.-+++...
T Consensus 246 ~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdt--a~dRlkRa~~L 321 (531)
T COG3898 246 ASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDT--ALDRLKRAKKL 321 (531)
T ss_pred HHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCc--HHHHHHHHHHH
Confidence 445544444444 23332211 12235677778888888777777654444433333334444443 3333333322
Q ss_pred cCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHH-cCCHHHHHHHHHhC
Q 003439 543 EGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR-AGHLGMAHNFIQNM 611 (820)
Q Consensus 543 ~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~-~g~~~eA~~~~~~m 611 (820)
..++||. .+...+..+-...|++..|..--+... ...|....|..|.+.-.- .|+-.++...+-+.
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 1256665 466666777777777777776554444 456777777777666543 37777777776655
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.95 E-value=0.095 Score=52.95 Aligned_cols=101 Identities=8% Similarity=0.031 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 003439 552 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD----ASIWGALLG 625 (820)
Q Consensus 552 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~ 625 (820)
|..........|++++|...|+.+.+.+.-.+ ....+-.+..+|...|++++|...|+.+ ...|+ ...|-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333445677777777777665432211 0234556667777777777777777666 11222 335555666
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCcc
Q 003439 626 ACRIHGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 626 ~~~~~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
.+...|+.+.|...++++++..|++..
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 777888999999999999888886553
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=1.5 Score=42.88 Aligned_cols=169 Identities=10% Similarity=0.027 Sum_probs=105.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--CCccc--------cchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 003439 486 ATCLVDMYGKCGRIDDAMSLFYQVPR--SSSVP--------WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 555 (820)
Q Consensus 486 ~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~--------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 555 (820)
+++|+..|.-..-+++-...|+.-.. ..+.. -+.++..+.-+|.+.-.+.++++.++..-+-+......|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 46666666655555555555554332 12222 355666666778888888899999886544466677778
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhhC----CCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHh
Q 003439 556 LTACSHSGLVSEGQRYFHMMQEEFG----IKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV-RP-DASIWGALLGACRI 629 (820)
Q Consensus 556 l~a~~~~g~~~~a~~~~~~m~~~~g----~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~~ 629 (820)
.+.-.+.|+++.|..+|+...+..+ ++-+..+...+...|.-+.++.+|...+.+.+. .| |++.-|.-.-...-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 8888899999999999997765422 222222333333455566788888888877742 22 23333332222334
Q ss_pred cCChhHHHHHHHHHhccCCCCcchH
Q 003439 630 HGNMELGAVASDRLFEVDSENVGYY 654 (820)
Q Consensus 630 ~g~~~~a~~~~~~~~~~~p~~~~~~ 654 (820)
.|+...|++..+.+.+..|.....-
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~l~e 323 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccchhh
Confidence 5778888888888888888654433
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.90 E-value=0.0053 Score=49.25 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcc----CCC---CcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 619 IWGALLGACRIHGNMELGAVASDRLFEV----DSE---NVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 619 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
+++.+...|...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6677777777777777777777777653 121 234566788888888888888888877653
No 214
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.90 E-value=1.9 Score=42.14 Aligned_cols=194 Identities=18% Similarity=0.156 Sum_probs=118.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 003439 483 VFVATCLVDMYGKCGRIDDAMSLFYQVP-----RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 557 (820)
Q Consensus 483 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 557 (820)
..........+...+.+..+...+.... ......+..+...+...++..++.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3455555566666666666666665543 22233355555556666667777777777766332221 12222222
Q ss_pred -HHHhcCCHHHHHHHHHHhHHhhCCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh
Q 003439 558 -ACSHSGLVSEGQRYFHMMQEEFGIKP----HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD--ASIWGALLGACRI 629 (820)
Q Consensus 558 -a~~~~g~~~~a~~~~~~m~~~~g~~p----~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~--~~~~~~ll~~~~~ 629 (820)
++...|+++++...+..... ..| ....+......+...++.++|...+.+. ...|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 56777777777777777642 222 2233334444466677788888777766 33333 4567777777777
Q ss_pred cCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 630 HGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 630 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.++.+.|...+..+....|.....+..++..+...|.++++...+......
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 778888888888888887765555666666666666677777777666544
No 215
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.78 E-value=0.025 Score=58.01 Aligned_cols=128 Identities=10% Similarity=0.100 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH---hHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCCHH
Q 003439 551 TFVSLLTACSHSGLVSEGQRYFHM---MQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-------P-VRPDAS 618 (820)
Q Consensus 551 t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-------~-~~p~~~ 618 (820)
.|..|.+.|.-.|++++|+..++. +.+++|-+. ....+..+.+.+.-.|+++.|.+.++.. + ..-...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 466666666677889999887764 233444433 2356777888888889999998888754 1 112344
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcc----C--CCCcchHHhHHHHhhhcCCcchHHHHHHHHH
Q 003439 619 IWGALLGACRIHGNMELGAVASDRLFEV----D--SENVGYYVLMSNIYANVGKWEGVDEVRSLAR 678 (820)
Q Consensus 619 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 678 (820)
+.-+|.+.|....+++.|+.++.+-+.+ + .....++..|+++|...|.-++|..+.++-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6678888888888999999988875542 2 2345577889999999999999887766554
No 216
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=4.2 Score=46.12 Aligned_cols=80 Identities=14% Similarity=0.082 Sum_probs=50.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCC
Q 003439 215 MISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 294 (820)
Q Consensus 215 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 294 (820)
-|..+.+.+.+++|+++-+.-.. ..|.. .-..++..+|+.+.-.|+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~--~~~~~--------------------------------~i~kv~~~yI~HLl~~~~ 407 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIG--NEERF--------------------------------VIKKVGKTYIDHLLFEGK 407 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccC--Ccccc--------------------------------chHHHHHHHHHHHHhcch
Confidence 46677888888888887654322 11110 022345666777777777
Q ss_pred HHHHHHHHhccCCCCchHHHHHHHHHHhCCChhh
Q 003439 295 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 328 (820)
Q Consensus 295 ~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~ 328 (820)
+++|-...-.|...+..-|---+..+...++...
T Consensus 408 y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 408 YDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 7777777777777777777766666666665443
No 217
>PRK11906 transcriptional regulator; Provisional
Probab=95.72 E-value=0.57 Score=50.15 Aligned_cols=157 Identities=9% Similarity=0.100 Sum_probs=104.5
Q ss_pred ccc--chHHHHHHhc-----CChHHHHHHHHHHHH-cCCCCChh-HHHHHHHHHHh---------cCCHHHHHHHHHHhH
Q 003439 515 VPW--NAIISCHGIH-----GQGDKALNFFRQMLD-EGVRPDHI-TFVSLLTACSH---------SGLVSEGQRYFHMMQ 576 (820)
Q Consensus 515 ~~~--~~li~~~~~~-----g~~~~A~~l~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~m~ 576 (820)
..| ..++.|.... ...+.|+.+|.+... ..+.|+.. .|..+..++.. .....+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 5566655442 234688889999982 22677754 44444333221 223455666655555
Q ss_pred HhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 003439 577 EEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDAS-IWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 653 (820)
Q Consensus 577 ~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 653 (820)
.+.| |......+..+++-.|+++.|...|++. ...||.. +|......+.-.|+.++|.+.++++++++|....+
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 3444 5566667777778888899999999987 5677754 78778888888999999999999999999987665
Q ss_pred HHh--HHHHhhhcCCcchHHHHHH
Q 003439 654 YVL--MSNIYANVGKWEGVDEVRS 675 (820)
Q Consensus 654 ~~~--l~~~y~~~g~~~~A~~~~~ 675 (820)
-+. ..++|...+ +++|.+++-
T Consensus 409 ~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 409 VVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHcCCc-hhhhHHHHh
Confidence 554 344566654 566666553
No 218
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.60 E-value=0.11 Score=47.50 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=70.9
Q ss_pred HHhcCCHHHHHHHHHHhHHhhCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 003439 559 CSHSGLVSEGQRYFHMMQEEFGIK--PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 636 (820)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~g~~--p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a 636 (820)
....|+.+.+.+.+..+..-+.-. |+... ...+....+.++++ -..+...++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHH
Confidence 345667777777777666443211 11111 11222233333332 123556677788899999999
Q ss_pred HHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 637 AVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 637 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
...+++++..+|-+...|..+..+|...|+..+|.++++.+..
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988753
No 219
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.49 E-value=5.8 Score=44.79 Aligned_cols=111 Identities=11% Similarity=0.112 Sum_probs=80.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003439 548 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGAC 627 (820)
Q Consensus 548 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~ 627 (820)
...|.+--+.-+...|+-.+|.++-...+ -||...|---+.+++..+++++-+++-+++. .++-|.-...+|
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c 754 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEAC 754 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHH
Confidence 33455666667778888888888765443 4677777777888888999988888877763 245566678889
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHH
Q 003439 628 RIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR 674 (820)
Q Consensus 628 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 674 (820)
.+.|+.++|.+++-+.-.+. -...+|.+.|++.+|.+.-
T Consensus 755 ~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHH
Confidence 99999999988877553322 4667888888888887654
No 220
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.41 E-value=1.7 Score=43.53 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=32.7
Q ss_pred HHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccH----hhHHHHhhccCChhHHHHHHHHHHHh
Q 003439 418 LITGYAQNGLASEAIEVFQMMEECNEINPNQGTY----VSILPAYSHVGALRQGIKIHARVIKN 477 (820)
Q Consensus 418 li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~----~~ll~a~~~~~~~~~a~~i~~~~~~~ 477 (820)
....+.+.|++++|++.|+++.. ..|+.... ..+..++.+.++++.|...++..++.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~---~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDN---RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34445566777777777777765 44443221 23334555666666666666666554
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.37 E-value=0.022 Score=45.60 Aligned_cols=59 Identities=15% Similarity=0.253 Sum_probs=32.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 003439 588 YGCMVDLFGRAGHLGMAHNFIQNM-------P-VRPD-ASIWGALLGACRIHGNMELGAVASDRLFEV 646 (820)
Q Consensus 588 ~~~li~~~~~~g~~~eA~~~~~~m-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 646 (820)
|+.+...|.+.|++++|++.+++. + ..|+ ..++..+...+...|++++|++.+++++++
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444444444444444444444433 1 1122 336666777777777777777777776653
No 222
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.28 E-value=0.43 Score=52.61 Aligned_cols=252 Identities=12% Similarity=0.040 Sum_probs=126.8
Q ss_pred CHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHH-------HHhhccCChhHHH
Q 003439 396 IINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL-------PAYSHVGALRQGI 468 (820)
Q Consensus 396 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll-------~a~~~~~~~~~a~ 468 (820)
.+++|.+..++- |....|..+...-.+.-.++-|...|-+...-.|++.-.. +..+. ..-+--|.+++|+
T Consensus 678 gledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkr-l~~i~s~~~q~aei~~~~g~feeae 754 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKR-LRTIHSKEQQRAEISAFYGEFEEAE 754 (1189)
T ss_pred chHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHH-hhhhhhHHHHhHhHhhhhcchhHhh
Confidence 355666655543 4456787777766666666777766655544233321100 00000 0111235666666
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-----ccccchHHHHHHhcCChHHHHHHHHHHHHc
Q 003439 469 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS-----SVPWNAIISCHGIHGQGDKALNFFRQMLDE 543 (820)
Q Consensus 469 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 543 (820)
+++-.+-+.. .-|.++.+.|++-...++++.-...+ ...|+.+...++....+++|.+.|..-...
T Consensus 755 k~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~ 825 (1189)
T KOG2041|consen 755 KLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT 825 (1189)
T ss_pred hhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 6665554432 24566667777776666665433111 223666666666666666666555432210
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 003439 544 GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 623 (820)
Q Consensus 544 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~l 623 (820)
...+.++.+..++++-..+-. .++-+....-.|.+++.+.|.-++|.+.+-+-..+ . +-
T Consensus 826 ---------e~~~ecly~le~f~~LE~la~------~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p-k-----aA 884 (1189)
T KOG2041|consen 826 ---------ENQIECLYRLELFGELEVLAR------TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP-K-----AA 884 (1189)
T ss_pred ---------HhHHHHHHHHHhhhhHHHHHH------hcCcccchHHHHHHHHHhhchHHHHHHHHHhccCc-H-----HH
Confidence 123334444444444333322 23334455566777777777777777776655422 1 23
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCC-----------CcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 624 LGACRIHGNMELGAVASDRLFEVDSE-----------NVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 624 l~~~~~~g~~~~a~~~~~~~~~~~p~-----------~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+..|...+++.+|.++.++..--+-. ......--+..+.++|+.-+|.++..+|.++
T Consensus 885 v~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 885 VHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 34455555555555554432100000 0000112234577777777777777777654
No 223
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.25 E-value=1.3 Score=43.10 Aligned_cols=139 Identities=12% Similarity=0.108 Sum_probs=74.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 003439 520 IISCHGIHGQGDKALNFFRQMLDEGVRPDH----ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 595 (820)
Q Consensus 520 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 595 (820)
....+.+.|++.+|++.|+++... -|+. .....++.++.+.|++++|...++...+.+.-.|... +...+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~ 87 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGL 87 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHH
Confidence 344556777788888888887774 2321 2455566677777888888887777776655544431 11111111
Q ss_pred HHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch-----------------HHhHH
Q 003439 596 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY-----------------YVLMS 658 (820)
Q Consensus 596 ~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------------~~~l~ 658 (820)
+.-... ...+ .. ....+....|...++.++..-|++.-. -..++
T Consensus 88 ~~~~~~---~~~~---~~-------------~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 88 SYYKQI---PGIL---RS-------------DRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp HHHHHH---HHHH----T-------------T---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhC---ccch---hc-------------ccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100000 0000 00 112223455666666666666654332 22568
Q ss_pred HHhhhcCCcchHHHHHHHHHhC
Q 003439 659 NIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 659 ~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
..|.+.|.+..|..-++.+.+.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH
Confidence 8899999999999999988765
No 224
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.20 E-value=5.2 Score=42.51 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=56.5
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHH--HHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHH
Q 003439 605 HNFIQNMPVRP----DASIWGALLGA--CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 677 (820)
Q Consensus 605 ~~~~~~m~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 677 (820)
..++++.++.| +...-|.|..| +..+|++.++.-...=+.++.| ++.+|.+++-......+++||..++..+
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34455555554 33455666665 5688999999988888889999 8999999999999999999999998764
No 225
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.10 E-value=0.1 Score=45.90 Aligned_cols=95 Identities=9% Similarity=0.151 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 003439 483 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 562 (820)
Q Consensus 483 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 562 (820)
..++.++|.++++.|+++....+++..=.-|+. +-...+. --......|+..+..+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 456677777888888888877777654322211 1011111 111234678888888888888888
Q ss_pred CCHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 003439 563 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 593 (820)
Q Consensus 563 g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 593 (820)
|++..|.++.+...+.|+++-+...|..|+.
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 8888998888888888887766666766654
No 226
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=1 Score=46.98 Aligned_cols=160 Identities=19% Similarity=0.183 Sum_probs=98.0
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCccc-cchHHH--HHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH---HH--------
Q 003439 492 MYGKCGRIDDAMSLFYQVPRSSSVP-WNAIIS--CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL---LT-------- 557 (820)
Q Consensus 492 ~y~~~g~~~~A~~~~~~~~~~~~~~-~~~li~--~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~-------- 557 (820)
.+.-.|+.++|.++=-.+.+-|... +...+. ++-..++.+.|...|++.+. +.|+...-... ..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhh
Confidence 3444556666655544444333322 112222 23345677888888888777 55765432221 22
Q ss_pred --HHHhcCCHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHH-HHHHHHH--HH
Q 003439 558 --ACSHSGLVSEGQRYFHMMQEEFGIKPH-----LKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS-IWGALLG--AC 627 (820)
Q Consensus 558 --a~~~~g~~~~a~~~~~~m~~~~g~~p~-----~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~-~~~~ll~--~~ 627 (820)
-..+.|.+..|.+.+.+.. ++.|+ ...|.....+..+.|++++|+.--+..- +-|.. ++--+.. ++
T Consensus 256 gN~~fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCH 331 (486)
T ss_pred hhhHhhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHH
Confidence 2346889999999998776 56664 4556666777788999999998876652 33433 3333333 34
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcchHHhHH
Q 003439 628 RIHGNMELGAVASDRLFEVDSENVGYYVLMS 658 (820)
Q Consensus 628 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 658 (820)
...+++++|.+-++++.+.+.+ ......|.
T Consensus 332 l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~ 361 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLEKD-CEIRRTLR 361 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhccc-cchHHHHH
Confidence 5668899999999999987764 44444443
No 227
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.99 E-value=3.9 Score=39.89 Aligned_cols=197 Identities=15% Similarity=0.133 Sum_probs=132.0
Q ss_pred ccHhhHHHHhhccCChhHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCc---cccchHHH-H
Q 003439 449 GTYVSILPAYSHVGALRQGIKIHARVIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS---VPWNAIIS-C 523 (820)
Q Consensus 449 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~-~ 523 (820)
..+......+...+.+..+...+...... ........+..+...+...+..+.+.+.+......+. ..+..... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444445555555566555555554432 2233445555666666677777777777776663222 22333333 6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHc
Q 003439 524 HGIHGQGDKALNFFRQMLDEGVRP----DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRA 598 (820)
Q Consensus 524 ~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~ 598 (820)
+...|+.++|...+.+... ..| ....+......+...++.+++...+...... ... ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHc
Confidence 7888999999999999865 344 2234444455577888999999999888743 222 357788888889999
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003439 599 GHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 599 g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 649 (820)
|.+++|...+... ...|+ ...+..+...+...++.+.+...+++.....|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999998877 44454 445666666666777899999999999999886
No 228
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.98 E-value=0.69 Score=47.91 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=36.6
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHH----cCCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLD----EGVR-PDHITFVSLLTACSHSGLVSEGQRYFHMM 575 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 575 (820)
+..+..++.-.|+++.|.+.|+.-.. .|-+ ....+..+|.++|.-...++.|+.++.+-
T Consensus 238 ~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 238 HSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred hcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 55566666777777777777765433 2211 12235556777777777788888877643
No 229
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.96 E-value=0.38 Score=43.97 Aligned_cols=69 Identities=23% Similarity=0.363 Sum_probs=46.8
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhH----HhhCCCCChhH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQ----EEFGIKPHLKH 587 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~g~~p~~~~ 587 (820)
...++..+...|++++|+.+.+++... .| |...+..++.++...|+..+|.++|+.+. ++.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344566677788888888888888884 45 56688888888888888888888887764 34577777654
No 230
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.72 Score=46.32 Aligned_cols=105 Identities=13% Similarity=0.041 Sum_probs=75.6
Q ss_pred CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcC---CHHHHHHHHHhC-CCCCCHH-H
Q 003439 546 RP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG---HLGMAHNFIQNM-PVRPDAS-I 619 (820)
Q Consensus 546 ~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g---~~~eA~~~~~~m-~~~p~~~-~ 619 (820)
.| |...|..|..+|...|+.+.|...|....+-- .+++..+..+..++..+. .-.++.++|+++ ...|+.+ +
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 45 45688888888888888888888888776432 234556666666554432 445788888887 5566555 5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 003439 620 WGALLGACRIHGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 620 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
..-|..++...|++.+|...++.+++..|.+..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 556667788999999999999999998876544
No 231
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.88 E-value=0.24 Score=50.30 Aligned_cols=160 Identities=13% Similarity=0.101 Sum_probs=87.4
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHH-cCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCC--CC--ChhHH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLD-EGVRPDH---ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI--KP--HLKHY 588 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~--~p--~~~~~ 588 (820)
|-.+..++.+.-++.+++.+-+.-.. .|..|.. ....++..|....+.++++++.|+...+--.- .| ...+|
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 34444455444455555554433332 2333311 12233455566666777777777765532111 11 23567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-------CCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHhcc--CCCCcchH
Q 003439 589 GCMVDLFGRAGHLGMAHNFIQNM-------PVRP-----DASIWGALLGACRIHGNMELGAVASDRLFEV--DSENVGYY 654 (820)
Q Consensus 589 ~~li~~~~~~g~~~eA~~~~~~m-------~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~ 654 (820)
..|...|++..++++|.-+..+. .+.. ...+.-.|.-+++..|.+..|.+..+++.++ ...|-..+
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 77778888877777766554443 2221 1112233445677788887788777776553 23333333
Q ss_pred ----HhHHHHhhhcCCcchHHHHHHH
Q 003439 655 ----VLMSNIYANVGKWEGVDEVRSL 676 (820)
Q Consensus 655 ----~~l~~~y~~~g~~~~A~~~~~~ 676 (820)
..++++|...|+.|.|..-++.
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 3678888888888777665544
No 232
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.83 E-value=0.29 Score=43.07 Aligned_cols=81 Identities=19% Similarity=0.281 Sum_probs=45.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHhH--------------HhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--
Q 003439 548 DHITFVSLLTACSHSGLVSEGQRYFHMMQ--------------EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-- 611 (820)
Q Consensus 548 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~--------------~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-- 611 (820)
|..++..++.++++.|+++....+.+..- ....+.|+..+..+++.+|+..|++..|.++++..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45566777777777777777777665432 01123345555556666666666666666555443
Q ss_pred --CCCCCHHHHHHHHHHHH
Q 003439 612 --PVRPDASIWGALLGACR 628 (820)
Q Consensus 612 --~~~p~~~~~~~ll~~~~ 628 (820)
+++-+..+|..|+.-+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HcCCCCCHHHHHHHHHHHH
Confidence 33334555555554433
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.69 E-value=0.16 Score=54.15 Aligned_cols=63 Identities=13% Similarity=0.036 Sum_probs=46.7
Q ss_pred CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChh----HHHHHHHHHHHcCCHHHHHHHHHhC
Q 003439 546 RPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK----HYGCMVDLFGRAGHLGMAHNFIQNM 611 (820)
Q Consensus 546 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~----~~~~li~~~~~~g~~~eA~~~~~~m 611 (820)
.|+ ...++.+..+|.+.|++++|...|+... .+.|+.. .|..+..+|...|++++|++.+++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rAL---eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETAL---ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444 3477778888888888888888888766 3566643 4777888888888888888888775
No 234
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.47 E-value=1.1 Score=38.95 Aligned_cols=139 Identities=13% Similarity=0.166 Sum_probs=75.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHH
Q 003439 526 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 605 (820)
Q Consensus 526 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~ 605 (820)
..|..++..++..+..... +..-++-++--....-+-+-..+.++.+-.-+.+. .+|++....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHHH
Confidence 3566677777777666531 22222222222222223333444444433222222 244444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCCC
Q 003439 606 NFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 683 (820)
Q Consensus 606 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 683 (820)
.-+-.+. .+....+.-+......|.-+.-.+++..+..-+..++...+-++++|.+.|+..++.++++++-++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4444432 233344556777888899898889999888655558899999999999999999999999999999874
No 235
>PRK11906 transcriptional regulator; Provisional
Probab=94.28 E-value=0.49 Score=50.63 Aligned_cols=117 Identities=9% Similarity=0.050 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHH---------HcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 003439 564 LVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFG---------RAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHG 631 (820)
Q Consensus 564 ~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~---------~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 631 (820)
..+.|..+|.+......+.|+- ..|..+...+. ......+|.++.++. ...| |+.....+..+....|
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4567888888877544677763 34444433322 123455677777665 3444 6667777777788888
Q ss_pred ChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 632 NMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 632 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+.+.|...|+++..++|+.+..+...+++..-.|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999886654
No 236
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.04 E-value=0.077 Score=34.27 Aligned_cols=33 Identities=24% Similarity=0.206 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 003439 618 SIWGALLGACRIHGNMELGAVASDRLFEVDSEN 650 (820)
Q Consensus 618 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 650 (820)
.+|..+...+...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 468888889999999999999999999999863
No 237
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.96 E-value=4.9 Score=39.66 Aligned_cols=133 Identities=12% Similarity=0.142 Sum_probs=70.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHH
Q 003439 522 SCHGIHGQGDKALNFFRQMLDEGVRPD----HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR 597 (820)
Q Consensus 522 ~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 597 (820)
..-.+.|++++|.+.|+.+... .|. ..+...++-++-+.+++++|+...++..+.++-.||.. |...+.++.
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~--~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs- 117 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSR--HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLS- 117 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHc--CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHH-
Confidence 3344556666666666666653 221 22444455555666666666666666665555555542 222222222
Q ss_pred cCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc-----------------hHHhHHH
Q 003439 598 AGHLGMAHNFIQNMP-VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG-----------------YYVLMSN 659 (820)
Q Consensus 598 ~g~~~eA~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------------~~~~l~~ 659 (820)
.|.... ...|. .-...|...++.++..-|++.- .-..+++
T Consensus 118 ---------~~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iar 175 (254)
T COG4105 118 ---------YFFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIAR 175 (254)
T ss_pred ---------HhccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 111110 00011 1123344445555555554321 2236788
Q ss_pred HhhhcCCcchHHHHHHHHHhC
Q 003439 660 IYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 660 ~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.|.+.|.|.-|..-++.|.+.
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhc
Confidence 999999999999999998876
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=0.38 Score=50.12 Aligned_cols=95 Identities=7% Similarity=0.028 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhh
Q 003439 586 KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 663 (820)
Q Consensus 586 ~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 663 (820)
..+..+.-.|.+.+++.+|++.-++. ...| |.-..-.=..+|...|+++.|+..|+++++++|+|-.+..-|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35667777888999999998887765 4444 444666667889999999999999999999999998888888877776
Q ss_pred cCCcchH-HHHHHHHHhC
Q 003439 664 VGKWEGV-DEVRSLARDR 680 (820)
Q Consensus 664 ~g~~~~A-~~~~~~m~~~ 680 (820)
..+..+. .++|..|..+
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 6666654 6788888754
No 239
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.82 E-value=4.4 Score=39.39 Aligned_cols=57 Identities=26% Similarity=0.289 Sum_probs=31.9
Q ss_pred HHHHHHHcCChHHHHHHHHhhhhcCCCCCCc----ccHhhHHHHhhccCChhHHHHHHHHHHHh
Q 003439 418 LITGYAQNGLASEAIEVFQMMEECNEINPNQ----GTYVSILPAYSHVGALRQGIKIHARVIKN 477 (820)
Q Consensus 418 li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 477 (820)
....+.+.|++++|++.|+.+.. .-|+. .....+..++.+.|+++.|...++..++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~---~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLID---RYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHH---H-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455667777777777777766 22322 12234455566666666666666666554
No 240
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.78 E-value=0.12 Score=33.22 Aligned_cols=33 Identities=27% Similarity=0.279 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 003439 618 SIWGALLGACRIHGNMELGAVASDRLFEVDSEN 650 (820)
Q Consensus 618 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 650 (820)
..|..+...+...|++++|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 357778888888899999999999999888864
No 241
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.72 E-value=0.28 Score=48.10 Aligned_cols=109 Identities=15% Similarity=0.172 Sum_probs=82.8
Q ss_pred HHHHHhhCC--CCCccccchHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC----------
Q 003439 502 AMSLFYQVP--RSSSVPWNAIISCHGIH-----GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL---------- 564 (820)
Q Consensus 502 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~---------- 564 (820)
.++.|.... ++|-.+|-+++..|..+ +..+-....++.|.+-|+.-|..+|..||+.+-+..-
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345666666 67777788888877654 5677777788999999999999999999998765332
Q ss_pred ------HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHH-HHHHHHHhC
Q 003439 565 ------VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG-MAHNFIQNM 611 (820)
Q Consensus 565 ------~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~-eA~~~~~~m 611 (820)
-+-++.++++|. .+|+.||-++-..|+.+++|.|..- +...+.--|
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 244889999998 5699999999999999999998543 333443333
No 242
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.62 E-value=0.34 Score=47.98 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=52.9
Q ss_pred HcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---cchHHhHHHHhhhcCC
Q 003439 597 RAGHLGMAHNFIQNM-------PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN---VGYYVLMSNIYANVGK 666 (820)
Q Consensus 597 ~~g~~~eA~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~ 666 (820)
+.|++.+|.+.|... ...||..-| |...+...|+++.|...|..+..-.|++ +..+.-|+.+..+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 344455555555443 133455555 6677777777777777777776655443 4556677777788888
Q ss_pred cchHHHHHHHHHhC
Q 003439 667 WEGVDEVRSLARDR 680 (820)
Q Consensus 667 ~~~A~~~~~~m~~~ 680 (820)
-++|...+++..++
T Consensus 231 ~d~A~atl~qv~k~ 244 (262)
T COG1729 231 TDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877777655
No 243
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.62 E-value=0.38 Score=52.54 Aligned_cols=131 Identities=17% Similarity=0.249 Sum_probs=86.4
Q ss_pred HhcCChHHHHHHHHH-HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHH
Q 003439 525 GIHGQGDKALNFFRQ-MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 603 (820)
Q Consensus 525 ~~~g~~~~A~~l~~~-m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~e 603 (820)
..+|+++++.+..+. -.-..++ ..-...++.-+.+.|..+.|+++-..-.. -.++..+.|+++.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHHH
Confidence 456777776665541 1111122 33466777778888999999887543322 2466778999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCC
Q 003439 604 AHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 681 (820)
Q Consensus 604 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 681 (820)
|.++.++.. +...|..|......+|+++.|++++++. .-+..|.-+|...|+.+.-.++-+....+|
T Consensus 337 A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 999887654 7789999999999999999999999965 346667788999999877777777766654
No 244
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.39 E-value=2.6 Score=38.03 Aligned_cols=125 Identities=14% Similarity=0.236 Sum_probs=64.6
Q ss_pred hhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChH
Q 003439 452 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 531 (820)
Q Consensus 452 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 531 (820)
..++..+.+.+.......+++.+.+.+. .+....+.++.+|++.+. .
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~--------------------------------~ 57 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP--------------------------------Q 57 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH--------------------------------H
Confidence 3455555555666666666666665542 455566666666655321 2
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHc-CCHHHHHHHHHh
Q 003439 532 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA-GHLGMAHNFIQN 610 (820)
Q Consensus 532 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~-g~~~eA~~~~~~ 610 (820)
+.++.++. .++......++..|.+.+.++++..++..+.. +...++.+... ++.+.|.+++.+
T Consensus 58 ~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 58 KEIERLDN------KSNHYDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHHh------ccccCCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 22222221 12334444456666666666666666554321 11223333333 666777777665
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 003439 611 MPVRPDASIWGALLGACR 628 (820)
Q Consensus 611 m~~~p~~~~~~~ll~~~~ 628 (820)
- .+...|..++..+.
T Consensus 122 ~---~~~~lw~~~~~~~l 136 (140)
T smart00299 122 Q---NNPELWAEVLKALL 136 (140)
T ss_pred C---CCHHHHHHHHHHHH
Confidence 3 24556666665554
No 245
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.21 E-value=3 Score=45.73 Aligned_cols=151 Identities=19% Similarity=0.202 Sum_probs=93.6
Q ss_pred ccCCHHHHHHHHh--ccC-CCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhH
Q 003439 291 KFGMMRHALRVFD--QMM-ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 367 (820)
Q Consensus 291 ~~g~~~~A~~~f~--~m~-~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i 367 (820)
-.++++++.+... ++. .-+..-.+.+++-+-+.|.++.|+.+-..-.
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------------------------ 322 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------------------------ 322 (443)
T ss_dssp HTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------------------------
T ss_pred HcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------------------------
Confidence 4567777444332 111 1123347777888888888888887654432
Q ss_pred HHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCC
Q 003439 368 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 447 (820)
Q Consensus 368 ~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd 447 (820)
.-.+...++|+++.|.++-++.. +...|..|.....++|+.+-|.+.|++...
T Consensus 323 ------------------~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------- 375 (443)
T PF04053_consen 323 ------------------HRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD------- 375 (443)
T ss_dssp ------------------HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT--------
T ss_pred ------------------HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------
Confidence 22345567889999988887765 566899999999999999999999988765
Q ss_pred cccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 003439 448 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 507 (820)
Q Consensus 448 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 507 (820)
|..++-.|.-.|+.+.-.++-......|- +|.....+.-.|++++..+++.
T Consensus 376 ---~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 376 ---FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp ---HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred ---ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 55666677777887777777766666552 3344444555677777766663
No 246
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.14 E-value=6.1 Score=39.77 Aligned_cols=120 Identities=11% Similarity=0.051 Sum_probs=82.3
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCChh
Q 003439 558 ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA---LLGACRIHGNME 634 (820)
Q Consensus 558 a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~---ll~~~~~~g~~~ 634 (820)
.....|+..+|...|...... ..-+...--.|...|...|+.++|..++..+|.+-...-|.. -+..+.+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 456678888888888877743 222345666788888889999999999988875543333333 223333333333
Q ss_pred HHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 635 LGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 635 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+... +++-+..+|+|...-..|+..|...|+.++|.+.+-.+..+
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3332 34455678999999999999999999999998776666544
No 247
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.11 E-value=6.2 Score=42.63 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=29.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC-C-hhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003439 520 IISCHGIHGQGDKALNFFRQMLDEGVRP-D-HITFVSLLTACSHSGLVSEGQRYFHMM 575 (820)
Q Consensus 520 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~-~~t~~~ll~a~~~~g~~~~a~~~~~~m 575 (820)
+..+.-+.|+.++|++.|++|.+.. ++ | ......|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 4444455566666666666665531 12 1 124445566666666666666655543
No 248
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.02 E-value=0.67 Score=45.61 Aligned_cols=100 Identities=17% Similarity=0.211 Sum_probs=74.0
Q ss_pred hHHHHHhccCC--CCCcccHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCC---------
Q 003439 195 NVARKLFDDMP--VRDSGSWNAMISGYCQS-----GNAVEALDILDEMRLEGVSMDPITVASILPVCARSD--------- 258 (820)
Q Consensus 195 ~~A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~--------- 258 (820)
...++.|...+ ++|-.+|-+++..+... +.++=-...++.|.+-|+.-|..+|..||+.+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34566777777 78888898888887654 556666677888999999999999999998875532
Q ss_pred -------ChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCC
Q 003439 259 -------NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 294 (820)
Q Consensus 259 -------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 294 (820)
+-+-+..++++|...|+.||-.+-..|++.+.+.+-
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 223466777777777777777777777777766654
No 249
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.90 E-value=1.3 Score=39.60 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=35.8
Q ss_pred HHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 003439 596 GRAGHLGMAHNFIQNM----PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 596 ~~~g~~~eA~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
.+.|++++|.+.|+.+ |..| ...+-..|+.+|.+.|++++|...+++.+++.|.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 3456666666666555 2222 2234455777777777777777777777777776654
No 250
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.75 E-value=0.41 Score=44.62 Aligned_cols=87 Identities=13% Similarity=0.060 Sum_probs=67.2
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCC
Q 003439 594 LFGRAGHLGMAHNFIQNM-PVRP------DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 666 (820)
Q Consensus 594 ~~~~~g~~~eA~~~~~~m-~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 666 (820)
-+.+.|++++|..-|..+ ..-| ..+.|..-..+..+.+..+.|+.-..+++++.|....+...-+.+|.+...
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 345667777777666554 1111 234555555667788999999999999999999888888888999999999
Q ss_pred cchHHHHHHHHHhC
Q 003439 667 WEGVDEVRSLARDR 680 (820)
Q Consensus 667 ~~~A~~~~~~m~~~ 680 (820)
+++|.+-++++.+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998875
No 251
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.69 E-value=2.6 Score=37.67 Aligned_cols=19 Identities=5% Similarity=-0.078 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHhccCCCCc
Q 003439 633 MELGAVASDRLFEVDSENV 651 (820)
Q Consensus 633 ~~~a~~~~~~~~~~~p~~~ 651 (820)
...|...|++++..-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 4567777778888778643
No 252
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.57 E-value=12 Score=44.85 Aligned_cols=153 Identities=15% Similarity=0.149 Sum_probs=87.2
Q ss_pred CCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH----HHhcCCHHHHHHHH
Q 003439 497 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA----CSHSGLVSEGQRYF 572 (820)
Q Consensus 497 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a----~~~~g~~~~a~~~~ 572 (820)
|++++|+.-+.++. ..-|.-.+.--.++|.+.+|+.++ +|+...+..+..+ |...+.+++|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 56677766665554 334555555556777777777764 5666555444443 44566666666666
Q ss_pred HHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 003439 573 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI--WGALLGACRIHGNMELGAVASDRLFEVDSEN 650 (820)
Q Consensus 573 ~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 650 (820)
+..-+ + .--+.+|..+|++.+|+.+-.++....|... -..|.+-+...++.-+|-++.++... |
T Consensus 963 e~~Gk---l-------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s----d 1028 (1265)
T KOG1920|consen 963 ERCGK---L-------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS----D 1028 (1265)
T ss_pred HHhcc---H-------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc----C
Confidence 54321 0 1124566677777777777777754444442 24566667777766666665554432 1
Q ss_pred cchHHhHHHHhhhcCCcchHHHHHHHH
Q 003439 651 VGYYVLMSNIYANVGKWEGVDEVRSLA 677 (820)
Q Consensus 651 ~~~~~~l~~~y~~~g~~~~A~~~~~~m 677 (820)
+. --...|.++..|++|.++-...
T Consensus 1029 ~~---~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1029 PE---EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HH---HHHHHHhhHhHHHHHHHHHHhc
Confidence 11 1223456666777776655443
No 253
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.40 E-value=25 Score=40.55 Aligned_cols=75 Identities=13% Similarity=0.108 Sum_probs=44.3
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc-cCCCCcchHHhHHHHhhhcCCc
Q 003439 592 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE-VDSENVGYYVLMSNIYANVGKW 667 (820)
Q Consensus 592 i~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~y~~~g~~ 667 (820)
+..+....+.+++..+.+..+.+ ++..|-.++.-+...+..+.-.+...++++ +..++--.-..+.+++++.+..
T Consensus 712 ~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~l 787 (933)
T KOG2114|consen 712 MLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGTL 787 (933)
T ss_pred HHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCce
Confidence 34455566777777777776533 777888888888887766655555554443 2222222234455666666543
No 254
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.31 E-value=27 Score=40.60 Aligned_cols=267 Identities=9% Similarity=0.013 Sum_probs=117.5
Q ss_pred CcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHH
Q 003439 378 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 457 (820)
Q Consensus 378 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a 457 (820)
+....+-..-+..+.+.+++....+.+.. +..+...-.....+....|+.++|....+.+-. .|. ........++..
T Consensus 96 P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~-~g~-~~p~~cd~l~~~ 172 (644)
T PRK11619 96 PPARSLQSRFVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWL-TGK-SLPNACDKLFSV 172 (644)
T ss_pred chHHHHHHHHHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCC-CCChHHHHHHHH
Confidence 33334444455556667777777763322 233444445556677777887777766666654 221 122334455555
Q ss_pred hhccCChhHHHHH--HHHHHHhCC-----------CCc-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHH
Q 003439 458 YSHVGALRQGIKI--HARVIKNCL-----------CFD-VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISC 523 (820)
Q Consensus 458 ~~~~~~~~~a~~i--~~~~~~~g~-----------~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 523 (820)
+.+.|.+...... +..+...|- .++ ......++..+.+ ...+...+.... ++...-...+.+
T Consensus 173 ~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~ 248 (644)
T PRK11619 173 WQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFARTTG-PTDFTRQMAAVA 248 (644)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhccC-CChhhHHHHHHH
Confidence 5544433322110 111111110 011 1112222222221 222222222111 111111111122
Q ss_pred HH--hcCChHHHHHHHHHHHHcC-CCCChh--HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHc
Q 003439 524 HG--IHGQGDKALNFFRQMLDEG-VRPDHI--TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 598 (820)
Q Consensus 524 ~~--~~g~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 598 (820)
+. ...+.+.|..++.+..... +.+... ....+.......+...++...++..... ..+......-+..-.+.
T Consensus 249 l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~ 325 (644)
T PRK11619 249 FASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGT 325 (644)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHc
Confidence 22 2345677777777664432 222221 2333332223332245566655543311 12333344444444477
Q ss_pred CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHH
Q 003439 599 GHLGMAHNFIQNMPV--RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 658 (820)
Q Consensus 599 g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 658 (820)
++++.+...|..|+. .-...-.-=+..+....|+.++|...|+++.. + .++|-.|+
T Consensus 326 ~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LA 383 (644)
T PRK11619 326 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVA 383 (644)
T ss_pred cCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHH
Confidence 788877777777731 11111112244555567888888888887633 2 23555554
No 255
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.30 E-value=6.8 Score=39.43 Aligned_cols=152 Identities=14% Similarity=0.088 Sum_probs=102.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCH
Q 003439 523 CHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 601 (820)
Q Consensus 523 ~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~ 601 (820)
.....|+..+|..+|+...+. .| +...-..+..++...|+++.|..++..+-.+ --.........-+..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcC
Confidence 445778899999999988884 44 3456667888999999999999999776432 1111111223445667777766
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccC--CCCcchHHhHHHHhhhcCCcchH-HHHHHHH
Q 003439 602 GMAHNFIQNMPVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVD--SENVGYYVLMSNIYANVGKWEGV-DEVRSLA 677 (820)
Q Consensus 602 ~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~~~~A-~~~~~~m 677 (820)
.+..++-.+....| |...--.|...+...|+.+.|.+.+-.++..+ -+|...--.|..++.-.|.-+.+ ..++++|
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 66666666665566 45566677788888999998888777776643 34566666777777777755543 3444444
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.95 E-value=3.8 Score=44.21 Aligned_cols=139 Identities=12% Similarity=0.094 Sum_probs=66.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHH---
Q 003439 526 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG--- 602 (820)
Q Consensus 526 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~--- 602 (820)
+..++.+-+++-++.++ +.||..+-..++ +-.....+.++.+++++..+. | .. .|++....+
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~-------~lg~s~~~~~~g 244 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EA-------SLGKSQFLQHHG 244 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HH-------hhchhhhhhccc
Confidence 34455666666666666 567665433332 223344567777777665532 0 00 000000000
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--CcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 603 MAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE--NVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 603 eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
...+.+..-..+|-..+-..|...+++.|+.++|++.++.+++..|. +......|++.+...+++.|+..++.+-.+
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 00011111111222233344555556666666666666666655443 233445566666666666666666655443
No 257
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=91.89 E-value=8.3 Score=34.71 Aligned_cols=129 Identities=9% Similarity=0.017 Sum_probs=82.5
Q ss_pred CccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 003439 513 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 592 (820)
Q Consensus 513 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 592 (820)
+...-..++..+.+.+.+.....+++.+...+ ..+....+.++..|++.+ ..+..+++.. ..+.......+
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~ 76 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVG 76 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHH
Confidence 33445567777877888899999999988876 356667888888887653 3445555442 12233344567
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHhccCCCCcchHHhHHHHh
Q 003439 593 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIH-GNMELGAVASDRLFEVDSENVGYYVLMSNIY 661 (820)
Q Consensus 593 ~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 661 (820)
..+.+.+.++++.-++.+++... ..+..+..+ ++.+.|++.+++ +.++..|..++..+
T Consensus 77 ~~c~~~~l~~~~~~l~~k~~~~~------~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~ 135 (140)
T smart00299 77 KLCEKAKLYEEAVELYKKDGNFK------DAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKAL 135 (140)
T ss_pred HHHHHcCcHHHHHHHHHhhcCHH------HHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 77778888888888888875322 222333334 788888887775 23455565555444
No 258
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.73 E-value=21 Score=38.10 Aligned_cols=136 Identities=11% Similarity=0.110 Sum_probs=97.5
Q ss_pred ccccchHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHH-HHH
Q 003439 514 SVPWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY-GCM 591 (820)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~-~~l 591 (820)
...|...+..-.+..-.+.|..+|-+..+.| +.++...+++.+.-++ .|+..-|..+|+.=... -||...| +-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 3447777777777777888888888888888 5567777877777554 56778888888764433 2444333 345
Q ss_pred HHHHHHcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 003439 592 VDLFGRAGHLGMAHNFIQNM--PVRPD--ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 653 (820)
Q Consensus 592 i~~~~~~g~~~eA~~~~~~m--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 653 (820)
++-+.+-++-+.|..+|+.. .+..+ ..+|..+|.--..-|++..+..+-+++.++-|+....
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~ 538 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLI 538 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHH
Confidence 66677888888888888855 22333 4588888888888899988888888888888865443
No 259
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.65 E-value=3.8 Score=41.58 Aligned_cols=152 Identities=9% Similarity=0.057 Sum_probs=83.4
Q ss_pred cCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH----HHHHHhcCCHHHH
Q 003439 496 CGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL----LTACSHSGLVSEG 568 (820)
Q Consensus 496 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l----l~a~~~~g~~~~a 568 (820)
.|+..+|-..++++. +.|..+|+--=.+|..+|+.+.-...+++.... ..||...|..+ .-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 455666655565555 556677777777777777777777777776653 34555443332 2234566777777
Q ss_pred HHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCChhHHHHHH
Q 003439 569 QRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD-------ASIWGALLGACRIHGNMELGAVAS 640 (820)
Q Consensus 569 ~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~-------~~~~~~ll~~~~~~g~~~~a~~~~ 640 (820)
.+.-++.. .+.| |.-.-.++...+--.|+..|+.+++.+-.-.-+ ..-|..- --+...+.++.|+.+|
T Consensus 195 Ek~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~A-l~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 195 EKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTA-LFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHH-HhhhcccchhHHHHHH
Confidence 77655443 2333 223344555666667777777777766531100 1111111 1123346677777777
Q ss_pred HHHh--ccCCCCcc
Q 003439 641 DRLF--EVDSENVG 652 (820)
Q Consensus 641 ~~~~--~~~p~~~~ 652 (820)
++-+ +++.+|..
T Consensus 271 D~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 271 DREIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHHhhccchh
Confidence 6432 34555543
No 260
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.64 E-value=4.1 Score=45.32 Aligned_cols=116 Identities=14% Similarity=0.063 Sum_probs=73.0
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChhHHHHH-HHHHHHcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHhcCChh
Q 003439 562 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCM-VDLFGRAGHLGMAHNFIQNMPV------RPDASIWGALLGACRIHGNME 634 (820)
Q Consensus 562 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l-i~~~~~~g~~~eA~~~~~~m~~------~p~~~~~~~ll~~~~~~g~~~ 634 (820)
....+.+.++++.+.++ -|+...|... ...+...|++++|.+.|++.-. +-....+--+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 34566777777777654 3555444333 3445567777777777775420 112233444556677788899
Q ss_pred HHHHHHHHHhccCCCCcchHH-hHHHHhhhcCCc-------chHHHHHHHHHhC
Q 003439 635 LGAVASDRLFEVDSENVGYYV-LMSNIYANVGKW-------EGVDEVRSLARDR 680 (820)
Q Consensus 635 ~a~~~~~~~~~~~p~~~~~~~-~l~~~y~~~g~~-------~~A~~~~~~m~~~ 680 (820)
+|...+.++.+...-+...|. ..+-+|...|+. ++|.+++++....
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 999999888886655444444 456667778888 7777777766543
No 261
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.59 E-value=8.7 Score=37.45 Aligned_cols=106 Identities=14% Similarity=0.164 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003439 414 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMY 493 (820)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 493 (820)
.|.--..+|-...++++|...+.+..+ +..-|..-|. . ....+.|..+.+++.+. .--+..++.-..+|
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~--~yEnnrslfh-A------AKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASK--GYENNRSLFH-A------AKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH--HHHhcccHHH-H------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 344555666667777777766655543 1111111110 0 11223333333333332 11233456666677
Q ss_pred HhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHH
Q 003439 494 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 542 (820)
Q Consensus 494 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 542 (820)
..+|..+.|-..+++..+ ...+-++++|+++|++...
T Consensus 102 ~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqrala 138 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALA 138 (308)
T ss_pred HHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHH
Confidence 777777766655544321 1234456666666666544
No 262
>PRK09687 putative lyase; Provisional
Probab=91.32 E-value=19 Score=36.92 Aligned_cols=81 Identities=16% Similarity=0.127 Sum_probs=39.5
Q ss_pred CCcHHHHHHHHHHhhcCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCCh----hHHHHHHHHHHHCCCCCChHHHHhH
Q 003439 175 EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNA----VEALDILDEMRLEGVSMDPITVASI 250 (820)
Q Consensus 175 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~----~~A~~l~~~m~~~g~~p~~~t~~~l 250 (820)
.+|..+.-..+..+...|..+....+..-...+|...-...+.++.+-|+. ++++.++..+... .|+...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 445555555555555555433333333323344555555556666666653 3566666655322 2344444444
Q ss_pred HHhhhcC
Q 003439 251 LPVCARS 257 (820)
Q Consensus 251 l~a~~~~ 257 (820)
+.+++..
T Consensus 112 ~~aLG~~ 118 (280)
T PRK09687 112 INATGHR 118 (280)
T ss_pred HHHHhcc
Confidence 4444433
No 263
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.30 E-value=1.5 Score=44.27 Aligned_cols=159 Identities=13% Similarity=0.026 Sum_probs=114.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHH----HHHHHcCCH
Q 003439 526 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV----DLFGRAGHL 601 (820)
Q Consensus 526 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li----~~~~~~g~~ 601 (820)
-+|+..+|-..++++++. .+.|...+.-.=.+|...|+.+.-...++++..+ ..|+...|..+= -.+..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888999999999885 5567778888888999999999999988887743 355654454443 344578999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC----CcchHHhHHHHhhhcCCcchHHHHHH
Q 003439 602 GMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSE----NVGYYVLMSNIYANVGKWEGVDEVRS 675 (820)
Q Consensus 602 ~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~A~~~~~ 675 (820)
++|++.-++. +++| |.-.-.++...+..+|+..++.+..++-...-.+ -.-.|-+.+-.|...+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999887 5555 3445566777788899999999987765432211 12234456667788899999999998
Q ss_pred HHHhCCCCcCCc
Q 003439 676 LARDRGLKKTPG 687 (820)
Q Consensus 676 ~m~~~~~~~~~~ 687 (820)
.-.-+.+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 765554555544
No 264
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.92 E-value=18 Score=35.85 Aligned_cols=166 Identities=14% Similarity=0.130 Sum_probs=98.4
Q ss_pred HhcCCHHHHHHHHhhCCCCCccc------cchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHh----
Q 003439 494 GKCGRIDDAMSLFYQVPRSSSVP------WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH--ITFVSLLTACSH---- 561 (820)
Q Consensus 494 ~~~g~~~~A~~~~~~~~~~~~~~------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~---- 561 (820)
.+.|++++|.+.|+.+....+.+ --.++-++-+.+++++|+..+++.+.. -|++ .-|...|.+.+.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l--yP~~~n~dY~~YlkgLs~~~~i 122 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL--YPTHPNADYAYYLKGLSYFFQI 122 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCCCChhHHHHHHHHHHhccC
Confidence 45688888888888887332221 223455677889999999999998884 3432 344444444442
Q ss_pred ---cCCHH---HHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCh
Q 003439 562 ---SGLVS---EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI--WGALLGACRIHGNM 633 (820)
Q Consensus 562 ---~g~~~---~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~--~~~ll~~~~~~g~~ 633 (820)
..+.. +|..-|+....++ ||.. -..+|..-+.... |... =.++..-|.+.|.+
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKLN---DALAGHEMAIARYYLKRGAY 183 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcCh
Confidence 12233 3334444444332 3321 1111221111110 1110 02345668899999
Q ss_pred hHHHHHHHHHhccCCCCcc---hHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 634 ELGAVASDRLFEVDSENVG---YYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 634 ~~a~~~~~~~~~~~p~~~~---~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
..|..-++++++--|+-.. .+..|..+|.+.|..++|.+..+-+...
T Consensus 184 ~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 184 VAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 9999999999887665433 4556788899999999999887776543
No 265
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.89 E-value=21 Score=36.64 Aligned_cols=19 Identities=5% Similarity=-0.179 Sum_probs=13.1
Q ss_pred HHHhcCChhHHHHHHHHHh
Q 003439 626 ACRIHGNMELGAVASDRLF 644 (820)
Q Consensus 626 ~~~~~g~~~~a~~~~~~~~ 644 (820)
.+.+.+++++|...|+-.+
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 4556778888888777543
No 266
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=90.84 E-value=9.4 Score=40.44 Aligned_cols=72 Identities=19% Similarity=0.152 Sum_probs=51.8
Q ss_pred HHHHHhhcCCChhHHHHHhccCCCC---Cccc----HHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCChHHHHhHHH
Q 003439 183 SLLHMYCRFGLANVARKLFDDMPVR---DSGS----WNAMISGYCQ---SGNAVEALDILDEMRLEGVSMDPITVASILP 252 (820)
Q Consensus 183 ~li~~y~~~g~~~~A~~~f~~m~~~---~~~~----~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 252 (820)
.|+-.|-...+++...++.+.++.. +... --...-++-+ .|+.++|++++..+......+++.||..+-+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444588888999999999998753 2111 1123345556 8999999999999777777888888887776
Q ss_pred hh
Q 003439 253 VC 254 (820)
Q Consensus 253 a~ 254 (820)
.+
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 55
No 267
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.34 E-value=2.5 Score=41.97 Aligned_cols=84 Identities=15% Similarity=0.178 Sum_probs=53.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHHHcCC
Q 003439 526 IHGQGDKALNFFRQMLDEGVRPDH----ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFGRAGH 600 (820)
Q Consensus 526 ~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~ 600 (820)
+.|++.+|...|...++.. |+. ..+.-|..++...|++++|..+|..+.+.++-.|.. +.+--|.....+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 4456777777777776642 322 134446677777777777777777777666555543 556666666666666
Q ss_pred HHHHHHHHHhC
Q 003439 601 LGMAHNFIQNM 611 (820)
Q Consensus 601 ~~eA~~~~~~m 611 (820)
.++|...+++.
T Consensus 231 ~d~A~atl~qv 241 (262)
T COG1729 231 TDEACATLQQV 241 (262)
T ss_pred HHHHHHHHHHH
Confidence 66666666655
No 268
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.98 E-value=0.44 Score=30.60 Aligned_cols=31 Identities=13% Similarity=0.126 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003439 619 IWGALLGACRIHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 619 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 649 (820)
+|..+...+...|+.++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667777788888888888888888888874
No 269
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.86 E-value=37 Score=37.81 Aligned_cols=182 Identities=13% Similarity=0.100 Sum_probs=118.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 003439 482 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRS---SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 558 (820)
Q Consensus 482 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 558 (820)
+..+|..-++--.+.|+.+...-+|++..-+ =..-|--.+.-....|+.+-|-.++....+--.+-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4556677777777788888888888776522 1122444444444458888777777766664222222332222334
Q ss_pred HHhcCCHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHHHcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHH
Q 003439 559 CSHSGLVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFGRAGHLGMAH---NFIQNM-PVRPDASIWGALLG-----ACR 628 (820)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~eA~---~~~~~m-~~~p~~~~~~~ll~-----~~~ 628 (820)
+...|+++.|..+++.+.+++ |+. ..-.--+.+..|.|..+.+. +++... +..-+..+...+.- -+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 567889999999999998763 653 33334466778889998888 555544 22223223333222 244
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCC
Q 003439 629 IHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 666 (820)
Q Consensus 629 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 666 (820)
..++.+.|..++.++.+..|++...|..+.++....+-
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 56889999999999999999999999988887766653
No 270
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=89.73 E-value=6 Score=44.48 Aligned_cols=183 Identities=19% Similarity=0.290 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCc----------ccHhhHHHHhhccCChhHHHHHHHHHHH-hC-CCC
Q 003439 414 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ----------GTYVSILPAYSHVGALRQGIKIHARVIK-NC-LCF 481 (820)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~----------~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g-~~~ 481 (820)
+-..++..|....+++..+++.+.++. + ||. +.|.-.++--.+-|+-++|..+.--+++ .| +.|
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~---i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR---I-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh---C-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 345566677777888888888888766 2 321 2344445444556777788777655544 33 233
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh---HHHHHHHH
Q 003439 482 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI---TFVSLLTA 558 (820)
Q Consensus 482 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a 558 (820)
++||-||++- +.|- +-+.|...+..+.|.+.|++.-+ +.|+.. .+..|+.+
T Consensus 279 ---------Dm~Cl~GRIY------KDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 279 ---------DMYCLCGRIY------KDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA 332 (1226)
T ss_pred ---------ceeeeechhh------hhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH
Confidence 4577777653 2222 22345566777889999999988 788764 34444443
Q ss_pred HHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 003439 559 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAV 638 (820)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~ 638 (820)
-.+ .++...++ . ..| -.|-.+++|.|.++.-.++++-. ..+.+-.-.+|+..|++
T Consensus 333 aG~--~Fens~El----q-~Ig--------mkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiq 387 (1226)
T KOG4279|consen 333 AGE--HFENSLEL----Q-QIG--------MKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQ 387 (1226)
T ss_pred hhh--hccchHHH----H-HHH--------HHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHH
Confidence 221 12222222 1 112 23456789999999888887542 24555566789999999
Q ss_pred HHHHHhccCCCCc
Q 003439 639 ASDRLFEVDSENV 651 (820)
Q Consensus 639 ~~~~~~~~~p~~~ 651 (820)
+.+.++++.|..-
T Consensus 388 Aae~mfKLk~P~W 400 (1226)
T KOG4279|consen 388 AAEMMFKLKPPVW 400 (1226)
T ss_pred HHHHHhccCCcee
Confidence 9999999998643
No 271
>PRK15331 chaperone protein SicA; Provisional
Probab=89.02 E-value=1.4 Score=40.25 Aligned_cols=81 Identities=12% Similarity=0.077 Sum_probs=40.1
Q ss_pred hcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 003439 495 KCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 571 (820)
Q Consensus 495 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 571 (820)
..|++++|..+|.-+. ..+..-|..|..++-..+++++|+..|......+ .-|...+-....++...|+.+.|+..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHHH
Confidence 4556666665555433 2222334455555555555555555555554432 12233333444555555555555555
Q ss_pred HHHhH
Q 003439 572 FHMMQ 576 (820)
Q Consensus 572 ~~~m~ 576 (820)
|+...
T Consensus 128 f~~a~ 132 (165)
T PRK15331 128 FELVN 132 (165)
T ss_pred HHHHH
Confidence 55444
No 272
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=88.96 E-value=10 Score=33.14 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=31.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 003439 521 ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 578 (820)
Q Consensus 521 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 578 (820)
+......|.-++-.+++.++... -+|++.....+.+||.+.|+..++.+++.+.-++
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 44455666666666666666542 2566666666677777777777777776666544
No 273
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.93 E-value=0.55 Score=30.79 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhc
Q 003439 620 WGALLGACRIHGNMELGAVASDRLFE 645 (820)
Q Consensus 620 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 645 (820)
|+.|...|.+.|++++|+.+++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55566666666666666666666443
No 274
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=88.92 E-value=36 Score=36.40 Aligned_cols=435 Identities=12% Similarity=0.092 Sum_probs=223.9
Q ss_pred CCcHHHHHHHHHHhhcCCChhHHHHHhccCCCCCc---ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHH
Q 003439 175 EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDS---GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 251 (820)
Q Consensus 175 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 251 (820)
+.|...|-.||.-|...|..++-++++++|..|-+ .+|..-|++=....++.....+|.+........|. |..-|
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldL--W~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDL--WMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhH--HHHHH
Confidence 56788999999999999999999999999987753 47999999888889999999999988766554443 33333
Q ss_pred HhhhcCCCh------HHHHHHHHHHHH-hCCCc-cHHHHHHHHHHHH---------ccCCHHHHHHHHhccCC-C-----
Q 003439 252 PVCARSDNI------LSGLLIHLYIVK-HGLEF-NLFVSNNLINMYA---------KFGMMRHALRVFDQMME-R----- 308 (820)
Q Consensus 252 ~a~~~~~~~------~~a~~~~~~~~~-~g~~~-~~~~~~~li~~y~---------~~g~~~~A~~~f~~m~~-~----- 308 (820)
.--.+.+.. ....+.++..+. .+++| ....|+..+...- .+.++|..++.+.++.. |
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle 196 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE 196 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence 332222211 122344555444 34444 3344555544332 12345566666766654 1
Q ss_pred ----CchHHHHHHHH-----HHhC--CChhhHHHHHHHHHH--cCCCCC----cchHHHHHH-----------HHHhcCc
Q 003439 309 ----DVVSWNSIIAA-----YEQS--NDPITAHGFFTTMQQ--AGIQPD----LLTLVSLTS-----------IVAQLND 360 (820)
Q Consensus 309 ----d~~~~~~li~~-----~~~~--g~~~~A~~~~~~m~~--~g~~pd----~~t~~~ll~-----------a~~~~~~ 360 (820)
|-..|..=+.- ++-. --+-.|...+++... .|+..- ..|++.+-+ -=. .+.
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~-en~ 275 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEM-ENG 275 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhh-cCC
Confidence 11122111111 1111 113456666666642 343322 222222111 000 000
Q ss_pred chhhh--------hHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHH-HHHHcCChHHH
Q 003439 361 CRNSR--------SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT-GYAQNGLASEA 431 (820)
Q Consensus 361 ~~~a~--------~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~-~~~~~g~~~~A 431 (820)
+..+. -+|.+++.. +.....+|----..+...++-+.|......-.+-. .+.+..++ .|--..+.++.
T Consensus 276 l~L~~~~~~qRi~y~~~q~~~y--~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~s-psL~~~lse~yel~nd~e~v 352 (660)
T COG5107 276 LKLGGRPHEQRIHYIHNQILDY--FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMS-PSLTMFLSEYYELVNDEEAV 352 (660)
T ss_pred cccCCCcHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCC-CchheeHHHHHhhcccHHHH
Confidence 00000 011111110 11111122111222223344444544443221111 11111111 12222232333
Q ss_pred HHHHHhhhhcCCCCCCcccHhhHHHHhh---ccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 003439 432 IEVFQMMEECNEINPNQGTYVSILPAYS---HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 508 (820)
Q Consensus 432 ~~l~~~m~~~~g~~pd~~t~~~ll~a~~---~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 508 (820)
...|+...+ . ...-.+.+.+=+ .-|+++.-.+++ .+. ...-..++..+++.-.+..-++.|+.+|-+
T Consensus 353 ~~~fdk~~q-~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell---~kr-~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k 422 (660)
T COG5107 353 YGCFDKCTQ-D-----LKRKYSMGESESASKVDNNFEYSKELL---LKR-INKLTFVFCVHLNYVLRKRGLEAARKLFIK 422 (660)
T ss_pred hhhHHHHHH-H-----HHHHHhhhhhhhhccccCCccccHHHH---HHH-HhhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 333332221 0 000000000000 012222111111 111 112345677788888888889999999987
Q ss_pred CC-----CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH-HHHHHHHHhcCCHHHHHHHHHHhHHhhCCC
Q 003439 509 VP-----RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITF-VSLLTACSHSGLVSEGQRYFHMMQEEFGIK 582 (820)
Q Consensus 509 ~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~ 582 (820)
.. .+++..++++|.-+++ |++.-|..+|+--+. .-||...| .-.+.-+...++-+.|..+|+...++ +.
T Consensus 423 ~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~--~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r--~~ 497 (660)
T COG5107 423 LRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL--KFPDSTLYKEKYLLFLIRINDEENARALFETSVER--LE 497 (660)
T ss_pred HhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH--HH
Confidence 76 4566678999887775 677888999986655 35666544 34566677889999999999966653 23
Q ss_pred CC--hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 003439 583 PH--LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGALLGACRIH 630 (820)
Q Consensus 583 p~--~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~ 630 (820)
.+ ...|..||+-=..-|++..+..+=++| ..-|-..+-....+-|...
T Consensus 498 ~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik 548 (660)
T COG5107 498 KTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhh
Confidence 33 568999999889999998888777766 2334443333444444443
No 275
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=88.91 E-value=10 Score=42.18 Aligned_cols=117 Identities=14% Similarity=0.077 Sum_probs=70.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHH-HHHHHhcCCHHHHHHHHHHhHHhhCCCCCh--hHHHHHHHHHHHcCCHHH
Q 003439 527 HGQGDKALNFFRQMLDEGVRPDHITFVSL-LTACSHSGLVSEGQRYFHMMQEEFGIKPHL--KHYGCMVDLFGRAGHLGM 603 (820)
Q Consensus 527 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~g~~p~~--~~~~~li~~~~~~g~~~e 603 (820)
..+.+.|.++++++.+ .-|+...|... ...+...|++++|.+.|+.......--|.. ..+--+.-.+.-.+++++
T Consensus 246 ~~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 4566788888888888 46777666544 335677888888888888654211111222 122334455777889999
Q ss_pred HHHHHHhCC-C-CCCHHHHHHHHHHH-HhcCCh-------hHHHHHHHHHhc
Q 003439 604 AHNFIQNMP-V-RPDASIWGALLGAC-RIHGNM-------ELGAVASDRLFE 645 (820)
Q Consensus 604 A~~~~~~m~-~-~p~~~~~~~ll~~~-~~~g~~-------~~a~~~~~~~~~ 645 (820)
|.+.|..+. . +-+..+|.-+..+| ...|+. ++|..+++++-.
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 988888873 1 22333444444443 345666 666666666543
No 276
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.54 E-value=6.6 Score=40.55 Aligned_cols=62 Identities=13% Similarity=0.292 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHcCCCCChh--HHHHHHHHHHhcCC--HHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 003439 531 DKALNFFRQMLDEGVRPDHI--TFVSLLTACSHSGL--VSEGQRYFHMMQEEFGIKPHLKHYGCMVD 593 (820)
Q Consensus 531 ~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~--~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 593 (820)
+++...|+.+.+.|+..+.. ....++..+..... +..+.++++.+.+. |+++...+|..+.-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 56778888888888877543 33334443332222 55788888888866 99988888776543
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.40 E-value=0.52 Score=30.91 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=22.3
Q ss_pred hHHhHHHHhhhcCCcchHHHHHHHHH
Q 003439 653 YYVLMSNIYANVGKWEGVDEVRSLAR 678 (820)
Q Consensus 653 ~~~~l~~~y~~~g~~~~A~~~~~~m~ 678 (820)
++..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36789999999999999999999855
No 278
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.34 E-value=19 Score=35.15 Aligned_cols=141 Identities=13% Similarity=0.089 Sum_probs=67.1
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHH--cCCCCChh--HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLD--EGVRPDHI--TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 592 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 592 (820)
|+--...|.++|.++-|-..+++.-+ +++.|+.. .|..-+......++...|. +.|....
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~----------------el~gk~s 157 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF----------------ELYGKCS 157 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH----------------HHHHHhh
Confidence 34445667777777666555554432 12445432 2222222222222222222 2334444
Q ss_pred HHHHHcCCHHHHHHHHHhCC-------CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhc----cCCCCcchHHhHHHH
Q 003439 593 DLFGRAGHLGMAHNFIQNMP-------VRPDAS-IWGALLGACRIHGNMELGAVASDRLFE----VDSENVGYYVLMSNI 660 (820)
Q Consensus 593 ~~~~~~g~~~eA~~~~~~m~-------~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~~~l~~~ 660 (820)
..|.|..+++||-..|.+-. .-|+.. .+-+.|-.+.-..|+..|++.++.-.+ ..|++..+...|...
T Consensus 158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 55666666666655554431 112221 233444444455566677777666444 234444455555544
Q ss_pred hhhcCCcchHHHHH
Q 003439 661 YANVGKWEGVDEVR 674 (820)
Q Consensus 661 y~~~g~~~~A~~~~ 674 (820)
| ..|+.|++..+.
T Consensus 238 y-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 238 Y-DEGDIEEIKKVL 250 (308)
T ss_pred h-ccCCHHHHHHHH
Confidence 4 445555555443
No 279
>PRK09687 putative lyase; Provisional
Probab=88.27 E-value=33 Score=35.19 Aligned_cols=75 Identities=11% Similarity=0.016 Sum_probs=42.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 003439 481 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 560 (820)
Q Consensus 481 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 560 (820)
++..+-...+.++++.|+.+....+.+.+..++ ..-..+.++...|.. +|+..+.++.+. .||...-...+.+|.
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 455666666777777777443333333333333 233566677777775 677777777763 456555544455443
No 280
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=88.16 E-value=33 Score=41.36 Aligned_cols=110 Identities=14% Similarity=0.105 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHHhc
Q 003439 485 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI--TFVSLLTACSHS 562 (820)
Q Consensus 485 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~ 562 (820)
+|.+..+-+...+.+++|.-.|+...+- .--+.+|...|++.+|+.+..+|.. .-|.. +-..|.+-+...
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-----ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGKL-----EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhccH-----HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHc
Confidence 3344444445566677776666554321 1234566666666666666655532 11222 124456666677
Q ss_pred CCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 003439 563 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 611 (820)
Q Consensus 563 g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m 611 (820)
++.-+|-++..+... .|. --+..|+++-.+++|..+....
T Consensus 1013 ~kh~eAa~il~e~~s----d~~-----~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLS----DPE-----EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred ccchhHHHHHHHHhc----CHH-----HHHHHHhhHhHHHHHHHHHHhc
Confidence 777777666654432 222 2355667777777777766554
No 281
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.88 E-value=0.83 Score=31.55 Aligned_cols=29 Identities=10% Similarity=0.218 Sum_probs=26.4
Q ss_pred chHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 652 GYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 652 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
..+..++..|.+.|++++|.++++++.+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999999876
No 282
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.80 E-value=18 Score=41.92 Aligned_cols=86 Identities=13% Similarity=0.055 Sum_probs=40.8
Q ss_pred HHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhC-CCCchhHHHHHHHHHHh--
Q 003439 419 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGK-- 495 (820)
Q Consensus 419 i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~li~~y~~-- 495 (820)
...+.-.|+++.|++.+.+. .+...|.+.+...+..+.-..-.+... ..+.... -.|...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~~---~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN---EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT-----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHhh---ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34456679999999988872 346667777776666554333222221 2221111 01112456777878875
Q ss_pred -cCCHHHHHHHHhhCC
Q 003439 496 -CGRIDDAMSLFYQVP 510 (820)
Q Consensus 496 -~g~~~~A~~~~~~~~ 510 (820)
..+..+|.++|--+.
T Consensus 339 ~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 339 EITDPREALQYLYLIC 354 (613)
T ss_dssp TTT-HHHHHHHHHGGG
T ss_pred hccCHHHHHHHHHHHH
Confidence 356777777775554
No 283
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=87.53 E-value=11 Score=32.78 Aligned_cols=50 Identities=22% Similarity=0.402 Sum_probs=21.7
Q ss_pred HHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHH
Q 003439 493 YGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 542 (820)
Q Consensus 493 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 542 (820)
++..|+++.|++.|.+.. +.....||.-..++.-.|+.++|++-+++.++
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 344444444444444322 23333444444444444444444444444433
No 284
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=87.38 E-value=13 Score=35.63 Aligned_cols=160 Identities=15% Similarity=0.141 Sum_probs=82.9
Q ss_pred cccchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 003439 515 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 593 (820)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 593 (820)
..||-+.--+...|+++.|.+.|+...+ +.|.. .+...-.-++--.|++.-|.+=|...-+.-.-.|-...|-.+
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl-- 175 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL-- 175 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHH--
Confidence 3466666666777777777777777766 34432 232222223445667776666444333221122222222111
Q ss_pred HHHHcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-------cchHHhHHHHhhhcC
Q 003439 594 LFGRAGHLGMAHNF-IQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN-------VGYYVLMSNIYANVG 665 (820)
Q Consensus 594 ~~~~~g~~~eA~~~-~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~y~~~g 665 (820)
--+.-+..+|..- .++.. ..|..-|...|-.+.-- ++. .+.+++++.+-..++ .++|.-|+.-|...|
T Consensus 176 -~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLg-kiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 176 -NEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLG-KIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred -HHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHh-hcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 1223355555533 33332 33545555555443321 111 122333333322222 346778999999999
Q ss_pred CcchHHHHHHHHHhCCC
Q 003439 666 KWEGVDEVRSLARDRGL 682 (820)
Q Consensus 666 ~~~~A~~~~~~m~~~~~ 682 (820)
..++|..+|+.....++
T Consensus 252 ~~~~A~~LfKLaiannV 268 (297)
T COG4785 252 DLDEATALFKLAVANNV 268 (297)
T ss_pred cHHHHHHHHHHHHHHhH
Confidence 99999999999876543
No 285
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.08 E-value=18 Score=33.13 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=59.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhhCCCCChh-HHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCh
Q 003439 556 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLK-HYGCMVDLFGRAGHLGMAHNFIQNMP-VRPDASIWGALLGACRIHGNM 633 (820)
Q Consensus 556 l~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~-~~~~li~~~~~~g~~~eA~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~ 633 (820)
++.-...++.+++..++..+. -+.|... +-..-...+.+.|++.+|..+|+++. -.|....-.+|+..|.....-
T Consensus 17 ~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 334456678888888888776 4566542 22233445678899999999998883 334445556777777766655
Q ss_pred hHHHHHHHHHhccCC
Q 003439 634 ELGAVASDRLFEVDS 648 (820)
Q Consensus 634 ~~a~~~~~~~~~~~p 648 (820)
..=....+++++..|
T Consensus 94 ~~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 94 PSWRRYADEVLESGA 108 (160)
T ss_pred hHHHHHHHHHHhcCC
Confidence 566666777777666
No 286
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.01 E-value=2.5 Score=42.69 Aligned_cols=76 Identities=16% Similarity=0.228 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHH-----cCCCCChhHHHH
Q 003439 483 VFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLD-----EGVRPDHITFVS 554 (820)
Q Consensus 483 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 554 (820)
..++..++..+..+|+.+.+...++++. +-|...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3466778888888888888888888776 44556688888888888888888888888765 466666655544
Q ss_pred HHHH
Q 003439 555 LLTA 558 (820)
Q Consensus 555 ll~a 558 (820)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
No 287
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=86.66 E-value=43 Score=34.79 Aligned_cols=92 Identities=9% Similarity=0.106 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCc---ccHhhHHHHhhccCChhHHHHHHHHHHHhCC-----CCchhH
Q 003439 414 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ---GTYVSILPAYSHVGALRQGIKIHARVIKNCL-----CFDVFV 485 (820)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~---~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-----~~~~~~ 485 (820)
+|-.+..++-+-.++.+++.+-..-....|..|.. ....++-.+....+.++++.+.|+.+.+.-- .....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 34444455544445555555544433323333321 1222344556666667777776666554211 123456
Q ss_pred HHHHHHHHHhcCCHHHHHHH
Q 003439 486 ATCLVDMYGKCGRIDDAMSL 505 (820)
Q Consensus 486 ~~~li~~y~~~g~~~~A~~~ 505 (820)
+.+|...|++..++++|.-+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f 184 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFF 184 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhh
Confidence 66677777777666665433
No 288
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.48 E-value=69 Score=36.94 Aligned_cols=141 Identities=10% Similarity=0.066 Sum_probs=74.7
Q ss_pred hhhhHHHHHHHHccCChHHHHHHhcccCCCCcchHHHHHHHHHhCCCchHHHHHHHHHhhhCCCCCCccccHHHHHhhcC
Q 003439 79 VFSSTKLVNFYANLGDLSFSRHTFDHISYRNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN 158 (820)
Q Consensus 79 ~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~t~~~ll~~~~~ 158 (820)
.-++-..|+.|.-.|++++|-...-.|-..+..-|--.+.-++..++......+ +....-..+...|-.+|-.+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~----lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY----LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc----CCCCCcccCchHHHHHHHHHHH
Confidence 345666777777777888887777777777777777777777766665544322 2222222344456666655544
Q ss_pred CcchHHHHHHHHHhCCCCcHHHHHHHHHHhhcCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHH
Q 003439 159 LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 236 (820)
Q Consensus 159 ~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 236 (820)
.+-..++..+.+. +++.+.....+++- ..-|++-.+ +...-..|..-|...++++.|+.++-..+
T Consensus 468 -~~~~~F~e~i~~W--p~~Lys~l~iisa~---------~~q~~q~Se-~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 468 -SDVKGFLELIKEW--PGHLYSVLTIISAT---------EPQIKQNSE-STALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred -HHHHHHHHHHHhC--ChhhhhhhHHHhhc---------chHHHhhcc-chhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 2233333333222 22222222222111 111111111 11122337888888899999988887765
No 289
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.21 E-value=0.28 Score=44.66 Aligned_cols=86 Identities=9% Similarity=0.123 Sum_probs=61.7
Q ss_pred HHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHH
Q 003439 351 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASE 430 (820)
Q Consensus 351 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 430 (820)
++..+.+.+.......++..+.+.+ ...+..+.+.++..|++.++.+...++++.... .-...++..+.+.|.+++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKEN-KENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTS-TC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcc-cccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 3455556667777777777777666 567788889999999999888888888874333 444567777788888888
Q ss_pred HHHHHHhhhh
Q 003439 431 AIEVFQMMEE 440 (820)
Q Consensus 431 A~~l~~~m~~ 440 (820)
|.-++.++..
T Consensus 89 a~~Ly~~~~~ 98 (143)
T PF00637_consen 89 AVYLYSKLGN 98 (143)
T ss_dssp HHHHHHCCTT
T ss_pred HHHHHHHccc
Confidence 8888887654
No 290
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.56 E-value=28 Score=32.35 Aligned_cols=134 Identities=11% Similarity=0.106 Sum_probs=76.5
Q ss_pred HHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHccCCHHHHHHHHhccCC
Q 003439 229 LDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF-VSNNLINMYAKFGMMRHALRVFDQMME 307 (820)
Q Consensus 229 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~f~~m~~ 307 (820)
++.++.+.+.++.|+...+..+++.+.+.|.+..-.+ ++..++-+|.. +...|++.-. ....+.++=-.|..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~---~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGN---QYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHc---cChHHHHHHHHHHH
Confidence 3555666677888888888888888888887654433 34445444433 3333333221 22233333333333
Q ss_pred CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHH
Q 003439 308 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 373 (820)
Q Consensus 308 ~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 373 (820)
+=...+..++..+...|++-+|+.+.++... -+......++.+..+.++...--.++.....
T Consensus 87 RL~~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 87 RLGTAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HhhhhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3233566777888889999999988877522 2223334556666665555544444444433
No 291
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.02 E-value=2.3 Score=43.16 Aligned_cols=95 Identities=8% Similarity=0.031 Sum_probs=67.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 003439 555 LLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHG 631 (820)
Q Consensus 555 ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 631 (820)
-.+-|.++|.+++|+..|..-. .+.| |+..+..-..+|.+..++..|+.--+.. .+.. -.-.|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3556788899999999887655 4566 7778888888888888888777655443 1111 1224555555555667
Q ss_pred ChhHHHHHHHHHhccCCCCcc
Q 003439 632 NMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 632 ~~~~a~~~~~~~~~~~p~~~~ 652 (820)
+.++|.+-++.+++++|++..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH
Confidence 888999999999999997544
No 292
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.92 E-value=43 Score=35.54 Aligned_cols=147 Identities=7% Similarity=-0.054 Sum_probs=75.5
Q ss_pred CccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC--hhH
Q 003439 513 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP---DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH--LKH 587 (820)
Q Consensus 513 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~--~~~ 587 (820)
...+|..++..+.+.|+++.|...+.++...+..+ +......-+...-..|+..+|...++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 34457777788888888888888888777643222 2223333445556677777887777766642 11111 111
Q ss_pred HHHHHHHHHHcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CChhHHHHHHHHHhccCCCCcchHHhHHHH
Q 003439 588 YGCMVDLFGRAGHLGMAHNF-IQNMPVRPDASIWGALLGACRIH------GNMELGAVASDRLFEVDSENVGYYVLMSNI 660 (820)
Q Consensus 588 ~~~li~~~~~~g~~~eA~~~-~~~m~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 660 (820)
...+...+.. ..+..... ......+.-..++..+..-+... ++.+++...|+++.++.|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111100000 00000000 00000000011222333333333 778899999999999999888887777765
Q ss_pred hh
Q 003439 661 YA 662 (820)
Q Consensus 661 y~ 662 (820)
+.
T Consensus 302 ~~ 303 (352)
T PF02259_consen 302 ND 303 (352)
T ss_pred HH
Confidence 53
No 293
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.14 E-value=3.3 Score=42.08 Aligned_cols=87 Identities=10% Similarity=0.091 Sum_probs=61.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcC
Q 003439 521 ISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 599 (820)
Q Consensus 521 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 599 (820)
..-|.+.|.+++|+..|.+.+. +.| |.+++..-..||.+...+..|..=-..... .| ...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-----Ld----~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-----LD----KLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-----hh----HHHHHHHHHHH
Confidence 4679999999999999999888 678 999999999999999888877765444331 11 23456777665
Q ss_pred -------CHHHHHHHHHhC-CCCCCHH
Q 003439 600 -------HLGMAHNFIQNM-PVRPDAS 618 (820)
Q Consensus 600 -------~~~eA~~~~~~m-~~~p~~~ 618 (820)
.+.||.+-.+.. .++|+..
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 455555444443 4677644
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.04 E-value=2.6 Score=38.40 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=20.9
Q ss_pred CChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHH
Q 003439 631 GNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 677 (820)
Q Consensus 631 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 677 (820)
++.+.++.++.-+.-+.|+.+..-..-++++...|+|.+|.++++.+
T Consensus 24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 24 GDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred CChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444443
No 295
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=83.69 E-value=3.9 Score=41.33 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 620 WGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 620 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
+..++..+...|+.+.+...++++++.+|-+...|..|..+|...|+...|...++.+.+
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 344455555555556666666666666666666666666666666666666665555543
No 296
>PRK12798 chemotaxis protein; Reviewed
Probab=83.44 E-value=68 Score=34.33 Aligned_cols=206 Identities=16% Similarity=0.163 Sum_probs=133.5
Q ss_pred cCCHHHHHHHHhhCC----CCCccccchHHHHH-HhcCChHHHHHHHHHHHHcCCCCChh----HHHHHHHHHHhcCCHH
Q 003439 496 CGRIDDAMSLFYQVP----RSSSVPWNAIISCH-GIHGQGDKALNFFRQMLDEGVRPDHI----TFVSLLTACSHSGLVS 566 (820)
Q Consensus 496 ~g~~~~A~~~~~~~~----~~~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~ 566 (820)
.|+.++|.+.|..+. .+.+..+-+|+.+- ....++.+|+++|++..- ..|... ....-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 689999999998887 33445577777664 456789999999999887 567543 4444555678899999
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHH-HHHHHHH---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003439 567 EGQRYFHMMQEEFGIKPHLKHYGC-MVDLFGR---AGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 642 (820)
Q Consensus 567 ~a~~~~~~m~~~~g~~p~~~~~~~-li~~~~~---~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 642 (820)
++..+-....++|.-.|-...|.. ++..+.+ ....+.-.+++..|.-.--..+|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 999888888877766665433322 2333333 334455556666664222345888888888999999999999999
Q ss_pred HhccCCCCcchHHhHHHHhhhcC-----CcchHHHHHHHHHhCCCCcCCceeEEEECCEEEEEEeCCCCCcccHHHHHHH
Q 003439 643 LFEVDSENVGYYVLMSNIYANVG-----KWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDEL 717 (820)
Q Consensus 643 ~~~~~p~~~~~~~~l~~~y~~~g-----~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l 717 (820)
+..+.. ....-...+.+|...- +.+++.+....+... ..+|.-..+.+..
T Consensus 283 A~~L~~-~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~------------------------~L~~~Dr~Ll~AA 337 (421)
T PRK12798 283 ALKLAD-PDSADAARARLYRGAALVASDDAESALEELSQIDRD------------------------KLSERDRALLEAA 337 (421)
T ss_pred HHHhcc-CCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChh------------------------hCChhhHHHHHHH
Confidence 998874 3444444555554443 234444433332221 2355556666666
Q ss_pred HHHHHHHHhCC
Q 003439 718 RNLTAKMKSLG 728 (820)
Q Consensus 718 ~~l~~~m~~~g 728 (820)
..+-.++.+..
T Consensus 338 ~~va~~V~~~p 348 (421)
T PRK12798 338 RSVARQVRRAP 348 (421)
T ss_pred HHHHHHHhcCc
Confidence 66666666543
No 297
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.83 E-value=3.1 Score=37.27 Aligned_cols=53 Identities=6% Similarity=-0.047 Sum_probs=36.7
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCC
Q 003439 629 IHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 681 (820)
Q Consensus 629 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 681 (820)
..++.++++.+++.+--+.|+.+..-..-++++...|+|+||.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 35666777777777777777777777777777777777777777777666543
No 298
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.60 E-value=22 Score=33.58 Aligned_cols=92 Identities=14% Similarity=0.123 Sum_probs=45.1
Q ss_pred chHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCC--CCC----hhHHH
Q 003439 518 NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI--TFVSLLTACSHSGLVSEGQRYFHMMQEEFGI--KPH----LKHYG 589 (820)
Q Consensus 518 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~--~p~----~~~~~ 589 (820)
..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+..+..+......- .++ ...|.
T Consensus 40 ~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~ 119 (177)
T PF10602_consen 40 EDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYE 119 (177)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 334445555555555555555555544444432 3445555566666666666655554432111 011 12233
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC
Q 003439 590 CMVDLFGRAGHLGMAHNFIQNM 611 (820)
Q Consensus 590 ~li~~~~~~g~~~eA~~~~~~m 611 (820)
.|. +...|++.+|-+.|-+.
T Consensus 120 gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 120 GLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHH--HHHhchHHHHHHHHHcc
Confidence 222 22356777777776555
No 299
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=82.52 E-value=62 Score=33.19 Aligned_cols=21 Identities=14% Similarity=0.022 Sum_probs=16.7
Q ss_pred HHHhhhcCCcchHHHHHHHHH
Q 003439 658 SNIYANVGKWEGVDEVRSLAR 678 (820)
Q Consensus 658 ~~~y~~~g~~~~A~~~~~~m~ 678 (820)
+.-..+.++|++|.+.++...
T Consensus 253 ~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHhhcCHHHHHHHHHHHH
Confidence 556778899999999988654
No 300
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.13 E-value=45 Score=33.67 Aligned_cols=56 Identities=11% Similarity=-0.068 Sum_probs=50.3
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 624 LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 624 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
...|...|.+.+|.++.++++.++|-+...+-.|.++|+..|+--.|.+-++.+.+
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 35688999999999999999999999999999999999999998888887777753
No 301
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.94 E-value=7 Score=39.42 Aligned_cols=101 Identities=18% Similarity=0.222 Sum_probs=71.7
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCc---cccch-HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH
Q 003439 478 CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSS---VPWNA-IISCHGIHGQGDKALNFFRQMLDEGVRPDHITF 552 (820)
Q Consensus 478 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~---~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 552 (820)
|......+...+++.-....+++++...+-++. .++. .-|.. .+.-.+..=++++++.++..=++-|+-||..|+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcchhccccchhhH
Confidence 444555566667777677778888888877665 2221 11211 111223344678999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHh
Q 003439 553 VSLLTACSHSGLVSEGQRYFHMMQEE 578 (820)
Q Consensus 553 ~~ll~a~~~~g~~~~a~~~~~~m~~~ 578 (820)
..++..+.+.+++.+|.++.-.|..+
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999888777654
No 302
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=81.89 E-value=44 Score=31.04 Aligned_cols=37 Identities=11% Similarity=0.171 Sum_probs=22.4
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHH
Q 003439 266 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 302 (820)
Q Consensus 266 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 302 (820)
....+.+.++.++...+..+|+.+.+.|++..-..++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3444455667777777777777776666655444443
No 303
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.65 E-value=1.3 Score=40.14 Aligned_cols=85 Identities=12% Similarity=0.177 Sum_probs=58.4
Q ss_pred hhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChH
Q 003439 452 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 531 (820)
Q Consensus 452 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 531 (820)
..++..+.+.+.++...++++.+.+.+...+..+.+.++.+|++.++.+...++++.... .....++..+.++|.++
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 456777888888899989999998877677888999999999999877777777763222 33344555555555555
Q ss_pred HHHHHHHH
Q 003439 532 KALNFFRQ 539 (820)
Q Consensus 532 ~A~~l~~~ 539 (820)
+|.-++.+
T Consensus 88 ~a~~Ly~~ 95 (143)
T PF00637_consen 88 EAVYLYSK 95 (143)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 55544443
No 304
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.14 E-value=1.3e+02 Score=35.24 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=61.5
Q ss_pred HHHHHHccCChHHHHHHhcccCCCCcchHHHH----HHHHHhCCCchHHHHHHHHHhhhCC-CCCCccccHHHHHhhcCC
Q 003439 85 LVNFYANLGDLSFSRHTFDHISYRNVYTWNSM----ISVYVRCGRLSEAVDCFYQFTLTSG-LRPDFYTFPPVLKACRNL 159 (820)
Q Consensus 85 ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~l~~~~m~~~~-~~p~~~t~~~ll~~~~~~ 159 (820)
-|++..+-.-++.|..+-..-.-+ ...-..+ ..-+.+.|++++|..-|-+ .-| +.| +.+++-+-..
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~---tI~~le~-----s~Vi~kfLda 410 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIE---TIGFLEP-----SEVIKKFLDA 410 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHH---HcccCCh-----HHHHHHhcCH
Confidence 455556666666676665443222 2122222 3344678999999877754 333 233 2334444222
Q ss_pred cc---hHHHHHHHHHhCCCCcHHHHHHHHHHhhcCCChhHHHHHhccCC
Q 003439 160 VD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 205 (820)
Q Consensus 160 ~~---~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 205 (820)
.. --..++.+.+.|+.. ..--+.|++.|.+.++.+.-.+..+.-.
T Consensus 411 q~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 22 122344556677543 3344678888888888888777766554
No 305
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.77 E-value=1e+02 Score=33.84 Aligned_cols=159 Identities=13% Similarity=0.065 Sum_probs=76.6
Q ss_pred CCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHH
Q 003439 446 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIIS 522 (820)
Q Consensus 446 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 522 (820)
.|.....+++..+.+.-...-.+.+..++...| -+-..+-.+...|... ..+.-..+++++. -.|++.-..|..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 355566666666666666666666666666654 2344555566666555 3344445555333 223333333333
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCh------hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH
Q 003439 523 CHGIHGQGDKALNFFRQMLDEGVRPDH------ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 596 (820)
Q Consensus 523 ~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~ 596 (820)
-|.+ ++..++..+|.+.... +-|.. ..|.-|... -..+.+.-..+...+....|...-...+.-+-+-|.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 3333 5555666666655554 22211 012222110 023444444444444444444444444444444555
Q ss_pred HcCCHHHHHHHHHhC
Q 003439 597 RAGHLGMAHNFIQNM 611 (820)
Q Consensus 597 ~~g~~~eA~~~~~~m 611 (820)
-..+++||++++..+
T Consensus 217 ~~eN~~eai~Ilk~i 231 (711)
T COG1747 217 ENENWTEAIRILKHI 231 (711)
T ss_pred cccCHHHHHHHHHHH
Confidence 555555555555543
No 306
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=79.70 E-value=13 Score=32.67 Aligned_cols=49 Identities=8% Similarity=0.036 Sum_probs=26.8
Q ss_pred ChhHHHHHHHHHhc-cCCCCcchH-HhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 632 NMELGAVASDRLFE-VDSENVGYY-VLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 632 ~~~~a~~~~~~~~~-~~p~~~~~~-~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+..+++.+++.+++ -.|+..--| ..|+-.+++.|+++.+.++.+...+.
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 44566666666665 333322222 23444566667777777666666543
No 307
>PRK10941 hypothetical protein; Provisional
Probab=79.56 E-value=8.8 Score=38.90 Aligned_cols=62 Identities=23% Similarity=0.093 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 619 IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 619 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
..+.|-.+|.+.++++.|.++.+.++.+.|+++.-+---+-+|.+.|.+..|..-++.-.+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 44667788999999999999999999999999988888999999999999999888777665
No 308
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=79.32 E-value=3.3 Score=26.36 Aligned_cols=32 Identities=31% Similarity=0.420 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCC
Q 003439 413 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 447 (820)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd 447 (820)
.+|..+...|...|++++|+..|++..+ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE---LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH---HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH---HCcC
Confidence 3577888888888999999998888877 5554
No 309
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=79.27 E-value=7.9 Score=28.02 Aligned_cols=49 Identities=10% Similarity=0.091 Sum_probs=35.1
Q ss_pred HhHHHHhhhcCCcchHHHHHHHHHhCCCCcCCceeEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHHhCCC
Q 003439 655 VLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGY 729 (820)
Q Consensus 655 ~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 729 (820)
..++-.+.+.|++++|.+..+.+.+. .|...++......+.++|.+.|.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 45667789999999999999998865 45556665556667777777663
No 310
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.22 E-value=17 Score=40.27 Aligned_cols=100 Identities=18% Similarity=0.171 Sum_probs=68.2
Q ss_pred HHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHH
Q 003439 391 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 470 (820)
Q Consensus 391 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i 470 (820)
..+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|.+... |.+|+-.+...|+-+.-..+
T Consensus 647 al~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHH
Confidence 34667888887776543 3567799999999999999999998887765 55677777777776655555
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 003439 471 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 508 (820)
Q Consensus 471 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 508 (820)
-....+.|.. |.-.-+|...|+++++.+++.+
T Consensus 715 a~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 715 ASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 5555555532 2222345567777777777643
No 311
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.52 E-value=20 Score=33.11 Aligned_cols=48 Identities=25% Similarity=0.257 Sum_probs=27.2
Q ss_pred hcCCHHHHHHHHhcCCCCCchHHHHHH-----HHHHHcCChHHHHHHHHhhhh
Q 003439 393 KLGIINSACAVFEGLPVKDVISWNTLI-----TGYAQNGLASEAIEVFQMMEE 440 (820)
Q Consensus 393 ~~g~~~~A~~~f~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~l~~~m~~ 440 (820)
+.+..++|..-|..+.+.+--.|-.|. ....+.|+..+|...|+++-.
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 445556666666655544444443332 234566777777777777655
No 312
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=78.50 E-value=66 Score=33.27 Aligned_cols=62 Identities=8% Similarity=0.342 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh--cC----CHHHHHHHHHHhHHhhCCC--CChhHHHHHH
Q 003439 531 DKALNFFRQMLDEGVRPDHITFVSLLTACSH--SG----LVSEGQRYFHMMQEEFGIK--PHLKHYGCMV 592 (820)
Q Consensus 531 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~g----~~~~a~~~~~~m~~~~g~~--p~~~~~~~li 592 (820)
++.+.+++.|.+.|++-+..+|.+....... .. ....+.++|+.|++.+.+- ++...+..|+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lL 148 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALL 148 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHH
Confidence 4667889999999999888877664433332 22 3567899999999886553 3334555553
No 313
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.37 E-value=1.2e+02 Score=34.64 Aligned_cols=78 Identities=13% Similarity=-0.011 Sum_probs=39.3
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHHhccCCCCcchHHhHHHHhhhc-C--CcchHHH
Q 003439 600 HLGMAHNFIQNMPVRPDASIWGALLGACRIH----GNMELGAVASDRLFEVDSENVGYYVLMSNIYANV-G--KWEGVDE 672 (820)
Q Consensus 600 ~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g--~~~~A~~ 672 (820)
+.+.+..++.+....-+......|...|..- .+.+.|...+.++.+.. +.....|+.++... | .+..|.+
T Consensus 454 ~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~ 530 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKR 530 (552)
T ss_pred chhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHH
Confidence 4445555555553333444434444333222 24566666666655544 45555666665432 1 1466777
Q ss_pred HHHHHHhC
Q 003439 673 VRSLARDR 680 (820)
Q Consensus 673 ~~~~m~~~ 680 (820)
+++...+.
T Consensus 531 ~~~~~~~~ 538 (552)
T KOG1550|consen 531 YYDQASEE 538 (552)
T ss_pred HHHHHHhc
Confidence 77666543
No 314
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=78.12 E-value=1.4e+02 Score=34.63 Aligned_cols=63 Identities=14% Similarity=0.122 Sum_probs=35.4
Q ss_pred HHHHHhhcCCChhHHHHHhccCC---CCCcccHHHHHHHHHhCCCh-------hHHHHHHHHHHHCCCCCChH
Q 003439 183 SLLHMYCRFGLANVARKLFDDMP---VRDSGSWNAMISGYCQSGNA-------VEALDILDEMRLEGVSMDPI 245 (820)
Q Consensus 183 ~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~-------~~A~~l~~~m~~~g~~p~~~ 245 (820)
++|--+.|||++++|.++..+.. .+....+-..+..|+.+.+- ++...-|++..+.....|++
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 45666778999999998883332 33445667777777665322 34455556555444333554
No 315
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.87 E-value=4 Score=24.69 Aligned_cols=31 Identities=16% Similarity=0.102 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003439 619 IWGALLGACRIHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 619 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 649 (820)
+|..+...+...|+++.|...+++.+++.|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666677777777777777777776664
No 316
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.82 E-value=4 Score=27.31 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhc
Q 003439 619 IWGALLGACRIHGNMELGAVASDRLFE 645 (820)
Q Consensus 619 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 645 (820)
+++.|...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 445555555555555555555555543
No 317
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=77.77 E-value=3.6 Score=29.73 Aligned_cols=34 Identities=21% Similarity=0.126 Sum_probs=26.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH
Q 003439 622 ALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 655 (820)
Q Consensus 622 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 655 (820)
.+.-|+.+.|+++.|.+..+.+++++|+|..+-.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3556789999999999999999999998765443
No 318
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.42 E-value=17 Score=30.11 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=41.7
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH
Q 003439 491 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITF 552 (820)
Q Consensus 491 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 552 (820)
..+...|++++|..+.+....||+.+|-+|-.. +.|..+++..-+.+|...| .|...+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 345677888888888888888888888776543 5666777777777777765 4544444
No 319
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=77.34 E-value=19 Score=29.61 Aligned_cols=63 Identities=14% Similarity=0.265 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 003439 529 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 593 (820)
Q Consensus 529 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 593 (820)
+.-++.+-++.+....+-|+.....+.+.||.+.+++.-|.++|+..+.+.|. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34466677777777888999999999999999999999999999988765333 4446666543
No 320
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=77.32 E-value=1.5e+02 Score=34.48 Aligned_cols=158 Identities=13% Similarity=0.063 Sum_probs=77.4
Q ss_pred HHHHHHHHHhh-cCCChhHHHHHhccCC---CCCcc------cHHHHHHHHHhCCChhHHHHHHHHHHHCC----CCCCh
Q 003439 179 FVAASLLHMYC-RFGLANVARKLFDDMP---VRDSG------SWNAMISGYCQSGNAVEALDILDEMRLEG----VSMDP 244 (820)
Q Consensus 179 ~~~~~li~~y~-~~g~~~~A~~~f~~m~---~~~~~------~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~ 244 (820)
.++-.+...|. ...+++.|+..+++.. +++.. +-..++..+.+.+... |...+++..+.- ..+-.
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 44555555555 4567788887777543 11111 1234455666665555 777777765421 11122
Q ss_pred HHHHhH-HHhhhcCCChHHHHHHHHHHHHhC---CCccHHHHHHHHHHHH--ccCCHHHHHHHHhcc----CC-------
Q 003439 245 ITVASI-LPVCARSDNILSGLLIHLYIVKHG---LEFNLFVSNNLINMYA--KFGMMRHALRVFDQM----ME------- 307 (820)
Q Consensus 245 ~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~y~--~~g~~~~A~~~f~~m----~~------- 307 (820)
..|..+ +..+...++...|.+.++.+...- ..|-..+.-.++.+.. +.+..+++.+..+++ ..
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~ 218 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV 218 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC
Confidence 222222 222222367777777776665532 2444444444444433 334444454444433 10
Q ss_pred --CCchHHHHHHHH--HHhCCChhhHHHHHHHHH
Q 003439 308 --RDVVSWNSIIAA--YEQSNDPITAHGFFTTMQ 337 (820)
Q Consensus 308 --~d~~~~~~li~~--~~~~g~~~~A~~~~~~m~ 337 (820)
|-..+|..++.. +...|+++.+...++++.
T Consensus 219 ~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 219 HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 123345555543 345666666665555553
No 321
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=77.24 E-value=20 Score=33.78 Aligned_cols=93 Identities=13% Similarity=0.128 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc------cchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh---HHHH
Q 003439 484 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP------WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI---TFVS 554 (820)
Q Consensus 484 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ 554 (820)
..+..+.+.|.+.|+.+.|.+.|.++.+....+ +-.+|......|++..+.....+....--.+... .-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456778889999999999999999887544332 6777888888899998888887776532222222 2112
Q ss_pred HHH--HHHhcCCHHHHHHHHHHhH
Q 003439 555 LLT--ACSHSGLVSEGQRYFHMMQ 576 (820)
Q Consensus 555 ll~--a~~~~g~~~~a~~~~~~m~ 576 (820)
+.. ++...+++.+|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 222 3455788999998886554
No 322
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.23 E-value=17 Score=40.12 Aligned_cols=98 Identities=15% Similarity=0.160 Sum_probs=61.1
Q ss_pred HccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHH
Q 003439 290 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 369 (820)
Q Consensus 290 ~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~ 369 (820)
.+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|..... |..|+-.+...|+-+....+-.
T Consensus 648 l~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred hhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 4567777777765443 4567788999999999999999988887654 4566666666666665555545
Q ss_pred HHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHh
Q 003439 370 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 405 (820)
Q Consensus 370 ~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 405 (820)
...+.| ..|.-.-+|...|+++++.+++.
T Consensus 717 ~~~~~g-------~~N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 717 LAKKQG-------KNNLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHhhc-------ccchHHHHHHHcCCHHHHHHHHH
Confidence 555544 01222334444555555555443
No 323
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=75.89 E-value=18 Score=30.10 Aligned_cols=60 Identities=13% Similarity=0.220 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 003439 532 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 593 (820)
Q Consensus 532 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 593 (820)
+..+-++.+....+.|+.....+.|.||.+.+++.-|.++|+.++.+.|.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 555666667777789999999999999999999999999999988765433 337776654
No 324
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=75.82 E-value=96 Score=31.53 Aligned_cols=56 Identities=11% Similarity=0.192 Sum_probs=38.1
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCccccchHHHHHHhcCChHHHH
Q 003439 479 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-----RSSSVPWNAIISCHGIHGQGDKAL 534 (820)
Q Consensus 479 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~ 534 (820)
-.++..+...+++.+++.+++..-.++++... ..|..+|..+|.....+|+..-..
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ 258 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMR 258 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHH
Confidence 44566666677777777777777777776543 456777777777777777765433
No 325
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.29 E-value=8.4 Score=38.89 Aligned_cols=101 Identities=10% Similarity=0.041 Sum_probs=64.9
Q ss_pred CCCCcHHHHHHHHHHhhcCCChhHHHHHhccCCC-CCc-----ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHH
Q 003439 173 GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPV-RDS-----GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPIT 246 (820)
Q Consensus 173 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 246 (820)
|......+...++..-....+++++...+-+... ++. .+-.+.+.- +-.-++++++.++..=.+-|+-||.+|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccchhh
Confidence 4444555555566655556677777776655542 111 111122222 233466788888888788888888888
Q ss_pred HHhHHHhhhcCCChHHHHHHHHHHHHhC
Q 003439 247 VASILPVCARSDNILSGLLIHLYIVKHG 274 (820)
Q Consensus 247 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g 274 (820)
++.+|+.+.+.+++..|.++.-.|+...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 8888888888888888888777776554
No 326
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=75.17 E-value=78 Score=33.55 Aligned_cols=64 Identities=19% Similarity=0.216 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC----CcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 616 DASIWGALLGACRIHGNMELGAVASDRLFEVDSE----NVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 616 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
...+|..+...++++|+++.|...+.++....+. .+.....-+.+....|+-++|....+...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4458999999999999999999999999886532 355666678889999999999988877776
No 327
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.93 E-value=4.3 Score=25.42 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=16.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCC
Q 003439 623 LLGACRIHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 623 ll~~~~~~g~~~~a~~~~~~~~~~~p~ 649 (820)
+..++.+.|+.++|...++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444555566666666666666666554
No 328
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=74.14 E-value=4.3 Score=25.71 Aligned_cols=30 Identities=20% Similarity=0.492 Sum_probs=18.9
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 548 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 548 (820)
|..+...|...|++++|++.|++.++ +.|+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 44556666777777777777777766 3444
No 329
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=73.89 E-value=1.3e+02 Score=31.96 Aligned_cols=109 Identities=17% Similarity=0.229 Sum_probs=76.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH------------HHHHHHhcCChhHHHHHHHHHhcc---CCC----C
Q 003439 590 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA------------LLGACRIHGNMELGAVASDRLFEV---DSE----N 650 (820)
Q Consensus 590 ~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~------------ll~~~~~~g~~~~a~~~~~~~~~~---~p~----~ 650 (820)
.|...+-.+|++++|.+++.+.+++ ||.+ -+..|...+|+-.|.-+.+++... +|+ .
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lK 211 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELK 211 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHH
Confidence 3445666899999999999988643 2322 235677888998888888776542 222 1
Q ss_pred cchHHhHHHHhhhcCCcchHHHHHHHHHhCCCCcCCceeEEEECCEEEEEEe
Q 003439 651 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT 702 (820)
Q Consensus 651 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~ 702 (820)
..+|.++..+..+.+.+=++.+.++..-+.|-.+...--|+++-..+-.|..
T Consensus 212 lkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~ 263 (439)
T KOG1498|consen 212 LKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCV 263 (439)
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEe
Confidence 2368889999999999999999999888776655544557766555545544
No 330
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=73.73 E-value=4.8 Score=43.22 Aligned_cols=84 Identities=12% Similarity=0.054 Sum_probs=63.4
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHH
Q 003439 595 FGRAGHLGMAHNFIQNM-PVRPDASIWGALL-GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDE 672 (820)
Q Consensus 595 ~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~ 672 (820)
+.+.+.++.|..++.++ .++||-..|-+.- .++.+.+++..|+.=+.++++++|...-.|+.-+.++.+.+++.+|..
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 34556677777777665 5677665444433 667788888888888888899999888888888888888888888888
Q ss_pred HHHHHH
Q 003439 673 VRSLAR 678 (820)
Q Consensus 673 ~~~~m~ 678 (820)
.++...
T Consensus 94 ~l~~~~ 99 (476)
T KOG0376|consen 94 DLEKVK 99 (476)
T ss_pred HHHHhh
Confidence 887654
No 331
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.64 E-value=48 Score=32.89 Aligned_cols=177 Identities=13% Similarity=0.092 Sum_probs=92.5
Q ss_pred cCCHHHHHHHHhcCCC----C---CchHHHHHHHHHHHcCChHHHHHHHHhhhhc--CCCC--CCcccHhhHHHHhhccC
Q 003439 394 LGIINSACAVFEGLPV----K---DVISWNTLITGYAQNGLASEAIEVFQMMEEC--NEIN--PNQGTYVSILPAYSHVG 462 (820)
Q Consensus 394 ~g~~~~A~~~f~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~g~~--pd~~t~~~ll~a~~~~~ 462 (820)
....++|..-|+.+.+ + .--+.-.+|..+.+.|++++.++.+.+|..- ..+. -+....++++...+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3456777777765432 1 1223456788888888888888888877530 1111 12334566666666555
Q ss_pred ChhHHHHHHHHHHHh-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---C---------CC---ccccchHHH
Q 003439 463 ALRQGIKIHARVIKN-----CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---R---------SS---SVPWNAIIS 522 (820)
Q Consensus 463 ~~~~a~~i~~~~~~~-----g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~---------~~---~~~~~~li~ 522 (820)
+.+.-..+++.-++. +-+.--.+-+.|...|...|.+..-.+++.++. + ++ ...|..-|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 555555554433221 001111123445556666666666666665553 0 11 112555566
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH-----hcCCHHHHHH
Q 003439 523 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS-----HSGLVSEGQR 570 (820)
Q Consensus 523 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-----~~g~~~~a~~ 570 (820)
.|....+-.+-..+|++.+.-.-.........++.-|. +.|.+++|-.
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 66666666666666766654221112233334555443 4566666554
No 332
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.04 E-value=98 Score=30.33 Aligned_cols=23 Identities=4% Similarity=-0.062 Sum_probs=16.7
Q ss_pred HhcCChhHHHHHHHHHhccCCCC
Q 003439 628 RIHGNMELGAVASDRLFEVDSEN 650 (820)
Q Consensus 628 ~~~g~~~~a~~~~~~~~~~~p~~ 650 (820)
...+++.+|+.+|+++-.-.-++
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 45678889999999886644443
No 333
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=72.72 E-value=8.3 Score=36.81 Aligned_cols=90 Identities=14% Similarity=0.147 Sum_probs=38.2
Q ss_pred HHhcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhH
Q 003439 559 CSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDAS-IWGALLGACRIHGNMEL 635 (820)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~ 635 (820)
|-..|.+.-|+-=|.... .+.|+ +.+||.|.--|...|+++.|.+.|+.. ...|.-. +...-.-++.--|+++.
T Consensus 75 YDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHh
Confidence 334444444444444333 34443 234454544455555555555555543 3333211 11111111222345555
Q ss_pred HHHHHHHHhccCCCCc
Q 003439 636 GAVASDRLFEVDSENV 651 (820)
Q Consensus 636 a~~~~~~~~~~~p~~~ 651 (820)
|.+-+.+..+-+|+||
T Consensus 152 Aq~d~~~fYQ~D~~DP 167 (297)
T COG4785 152 AQDDLLAFYQDDPNDP 167 (297)
T ss_pred hHHHHHHHHhcCCCCh
Confidence 5555555555555443
No 334
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=72.35 E-value=4.1 Score=27.25 Aligned_cols=29 Identities=21% Similarity=0.217 Sum_probs=24.2
Q ss_pred chHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 652 GYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 652 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.++..|+.+|...|++++|..++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35678999999999999999999988753
No 335
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=72.25 E-value=3 Score=24.89 Aligned_cols=23 Identities=4% Similarity=0.055 Sum_probs=15.7
Q ss_pred hHHhHHHHhhhcCCcchHHHHHH
Q 003439 653 YYVLMSNIYANVGKWEGVDEVRS 675 (820)
Q Consensus 653 ~~~~l~~~y~~~g~~~~A~~~~~ 675 (820)
....|+.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34567777777777777776654
No 336
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.50 E-value=87 Score=29.11 Aligned_cols=120 Identities=14% Similarity=0.122 Sum_probs=77.1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChh-HHHHH--HHHHHHcCC
Q 003439 525 GIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK-HYGCM--VDLFGRAGH 600 (820)
Q Consensus 525 ~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~-~~~~l--i~~~~~~g~ 600 (820)
++.+..++|+.-|..+.+.|...=.+ ..........+.|+...|...|+++-.. .-.|... -..-| ..++...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhcccc
Confidence 56677888888888888766443221 2222334567788888888888888744 2223221 11111 234566788
Q ss_pred HHHHHHHHHhCCCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 003439 601 LGMAHNFIQNMPVR--P-DASIWGALLGACRIHGNMELGAVASDRLFE 645 (820)
Q Consensus 601 ~~eA~~~~~~m~~~--p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 645 (820)
+++...-.+.+..+ | ....-.+|.-+-.+.|++..|...|+++..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88888777776322 2 234666777788889999999999988876
No 337
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.28 E-value=39 Score=33.09 Aligned_cols=55 Identities=9% Similarity=-0.102 Sum_probs=45.5
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 626 ACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 626 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.+...|++-++++....++..+|+|..+|..-+.+.+..=+.++|.+-+.+..+.
T Consensus 239 C~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 239 CLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 3446788889999999999999999999999988887777777888878777654
No 338
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=71.16 E-value=15 Score=35.06 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=52.2
Q ss_pred HHcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC----CcchHHhHHHHhhhcCCcch
Q 003439 596 GRAGHLGMAHNFIQNMPVRP--DASIWGALLGACRIHGNMELGAVASDRLFEVDSE----NVGYYVLMSNIYANVGKWEG 669 (820)
Q Consensus 596 ~~~g~~~eA~~~~~~m~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~ 669 (820)
.|.|+ ++|.+.|-++.-.| +....-.-+..|....|.+.++.++-+++++.+. |+..+..|+.+|.+.|++++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34454 46676666663233 3334444555666688899999999999886533 57788899999999999988
Q ss_pred HH
Q 003439 670 VD 671 (820)
Q Consensus 670 A~ 671 (820)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
No 339
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=71.16 E-value=13 Score=34.55 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCC
Q 003439 633 MELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 682 (820)
Q Consensus 633 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 682 (820)
+++|...|+++.+.+|+|..+...|- +. ++|-++..++...+.
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe-~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLE-MA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHH-HH------HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHH-HH------HhhHHHHHHHHHHHh
Confidence 56788888889999997765544442 22 345566666655544
No 340
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=71.07 E-value=5.2 Score=25.39 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=25.4
Q ss_pred chHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 652 GYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 652 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
..|..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35788999999999999999999988754
No 341
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.11 E-value=3.3 Score=42.29 Aligned_cols=88 Identities=13% Similarity=0.170 Sum_probs=64.2
Q ss_pred cCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHH
Q 003439 598 AGHLGMAHNFIQNM-PVRPDA-SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRS 675 (820)
Q Consensus 598 ~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 675 (820)
.|.+++|.+.|... +..|.. ..+..=.+++.+.+....|++-+..+++++|+...-|-.-+.+....|+|++|.+.+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 56677777777665 444443 3444455666777788888888888888888888888877777888888888888888
Q ss_pred HHHhCCCCcC
Q 003439 676 LARDRGLKKT 685 (820)
Q Consensus 676 ~m~~~~~~~~ 685 (820)
...+.+....
T Consensus 207 ~a~kld~dE~ 216 (377)
T KOG1308|consen 207 LACKLDYDEA 216 (377)
T ss_pred HHHhccccHH
Confidence 8877665443
No 342
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.91 E-value=49 Score=27.52 Aligned_cols=78 Identities=12% Similarity=0.080 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHc
Q 003439 260 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA 339 (820)
Q Consensus 260 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 339 (820)
-++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||...|-+|-.. +.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 34555554444443321 223333334556788999999999999999999999888765 567777777777777666
Q ss_pred C
Q 003439 340 G 340 (820)
Q Consensus 340 g 340 (820)
|
T Consensus 98 g 98 (115)
T TIGR02508 98 G 98 (115)
T ss_pred C
Confidence 5
No 343
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=68.35 E-value=7.1 Score=25.13 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=14.0
Q ss_pred CcchhHHhHHHHHHHhcCCHHHHH
Q 003439 378 MEDVIIGNAVVDMYAKLGIINSAC 401 (820)
Q Consensus 378 ~~~~~~~~~li~~y~~~g~~~~A~ 401 (820)
|.+..+++.|...|...|+.++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 455556666666666666665554
No 344
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.34 E-value=1.1e+02 Score=29.08 Aligned_cols=89 Identities=8% Similarity=0.038 Sum_probs=55.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHH-----HHHHHHcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHH
Q 003439 556 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM-----VDLFGRAGHLGMAHNFIQNMPVRPD--ASIWGALLGACR 628 (820)
Q Consensus 556 l~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l-----i~~~~~~g~~~eA~~~~~~m~~~p~--~~~~~~ll~~~~ 628 (820)
...+...+++++|..-++.... .|..+.+..+ .......|..|+|+..++... .++ ...-..-..++.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHH
Confidence 3456777888888887765542 1222333333 345667788888888887653 222 112223345677
Q ss_pred hcCChhHHHHHHHHHhccCCC
Q 003439 629 IHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 629 ~~g~~~~a~~~~~~~~~~~p~ 649 (820)
..|+-++|+..|+++++.+++
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 171 AKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HcCchHHHHHHHHHHHHccCC
Confidence 888888888888888877653
No 345
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=67.93 E-value=1.5e+02 Score=32.00 Aligned_cols=71 Identities=17% Similarity=0.286 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCC---CccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 003439 487 TCLVDMYGKCGRIDDAMSLFYQVPRS---SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 561 (820)
Q Consensus 487 ~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 561 (820)
..|+.-|.-.|++.+|.+.+.++.-| ..+.+-+++.+..+.|+-+.-+.++++.-..|+ +|-+.+-.+|.+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 34566667777777777777765532 345567777777777777666666666655542 344444444433
No 346
>PF15161 Neuropep_like: Neuropeptide-like
Probab=66.91 E-value=2.2 Score=30.20 Aligned_cols=18 Identities=33% Similarity=0.839 Sum_probs=12.7
Q ss_pred ecccccCCchhHHHHHhhh
Q 003439 775 KNLRVCGDCHNWTKFISQI 793 (820)
Q Consensus 775 kn~r~c~dch~~~k~~s~~ 793 (820)
..-|-|.|||.|- |+-+.
T Consensus 11 aesRPCVDCHAFe-fmqRA 28 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQRA 28 (65)
T ss_pred CCCCCchhhHHHH-HHHHH
Confidence 3468999999875 55543
No 347
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=66.29 E-value=36 Score=28.09 Aligned_cols=60 Identities=17% Similarity=0.165 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHH-HhCCCccHHHHHHHH
Q 003439 225 AVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV-KHGLEFNLFVSNNLI 286 (820)
Q Consensus 225 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li 286 (820)
.-++.+-++.+....+.|++....+.|+||.+.+++..|.++++-+. +.|. +...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 33566667777777888888888899999999899888888888766 3332 333454443
No 348
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=65.54 E-value=1.2e+02 Score=28.47 Aligned_cols=31 Identities=19% Similarity=0.332 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcC
Q 003439 531 DKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSG 563 (820)
Q Consensus 531 ~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g 563 (820)
++|+.-|++.+. +.|+. .++..+.+++...+
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 677777788777 78876 58888888876644
No 349
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.66 E-value=1.1e+02 Score=34.94 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHhCCCCchhHHHHHHH----H-HHhcCCHHHHHHHHhhC
Q 003439 464 LRQGIKIHARVIKNCLCFDVFVATCLVD----M-YGKCGRIDDAMSLFYQV 509 (820)
Q Consensus 464 ~~~a~~i~~~~~~~g~~~~~~~~~~li~----~-y~~~g~~~~A~~~~~~~ 509 (820)
...+.++++...+.|. ......+.. + ++...+++.|...|+.+
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~a 275 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLA 275 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 4567777777776653 222222222 2 33445666666666544
No 350
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=64.27 E-value=21 Score=34.82 Aligned_cols=63 Identities=13% Similarity=0.098 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhcCChh-------HHHHHHHHHhccCCC------CcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 618 SIWGALLGACRIHGNME-------LGAVASDRLFEVDSE------NVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 618 ~~~~~ll~~~~~~g~~~-------~a~~~~~~~~~~~p~------~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
..+.-+.+.|+..|+.+ .|...|+++++.+.. +.....+++.++.+.|+.++|.+.+.++...
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 36666777788887744 455566666654422 2345668999999999999999999998765
No 351
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=64.24 E-value=53 Score=31.43 Aligned_cols=73 Identities=11% Similarity=-0.032 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhC--CCCChhHHHHHHHHHHHcCCHHHH
Q 003439 531 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFG--IKPHLKHYGCMVDLFGRAGHLGMA 604 (820)
Q Consensus 531 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g--~~p~~~~~~~li~~~~~~g~~~eA 604 (820)
++|++.|-++...+.--+......|.. |-...+.+++++++....+-+. -.+|++.+.+|+..|-+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555655555443323333333333 3335566666666665554221 134555666666666666665555
No 352
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=63.98 E-value=5.7 Score=24.86 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=24.5
Q ss_pred hHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 653 YYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 653 ~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
++..++.+|.+.|++++|.+.++...+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3567899999999999999999998765
No 353
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=63.86 E-value=1.9e+02 Score=30.17 Aligned_cols=84 Identities=14% Similarity=-0.066 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHhHHhhCC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 003439 563 GLVSEGQRYFHMMQEEFGI---KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVA 639 (820)
Q Consensus 563 g~~~~a~~~~~~m~~~~g~---~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 639 (820)
+-.++|.+.|+.......- ..++.....+.....+.|..++-..+++.....++......++.+.....+.+.-.++
T Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 144 ECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHH
Confidence 3467888888888763111 3455666677777778888777666666665566788888999999989999988899
Q ss_pred HHHHhcc
Q 003439 640 SDRLFEV 646 (820)
Q Consensus 640 ~~~~~~~ 646 (820)
++.++.-
T Consensus 224 l~~~l~~ 230 (324)
T PF11838_consen 224 LDLLLSN 230 (324)
T ss_dssp HHHHHCT
T ss_pred HHHHcCC
Confidence 9988873
No 354
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=63.37 E-value=67 Score=32.60 Aligned_cols=110 Identities=11% Similarity=0.112 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHh--cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 003439 530 GDKALNFFRQMLD-EGVRPDHITFVSLLTACSH--SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 606 (820)
Q Consensus 530 ~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~ 606 (820)
..+|+.+|+.... ..+--|......+++.... ......--++.+-+...++-.++..+..+.+..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4455555552111 1133344455555554433 112333344455555666778888888899999999999999999
Q ss_pred HHHhCC----CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 003439 607 FIQNMP----VRPDASIWGALLGACRIHGNMELGAVA 639 (820)
Q Consensus 607 ~~~~m~----~~p~~~~~~~ll~~~~~~g~~~~a~~~ 639 (820)
+++... ...|...|..+|..-..+||......+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 988762 234677888888888888886544444
No 355
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=63.17 E-value=59 Score=29.33 Aligned_cols=89 Identities=8% Similarity=0.210 Sum_probs=60.8
Q ss_pred HHHhCCCCcH--HHHHHHHHHhhcCCChhHHHHHhccCC---------CCCcccHHHHHHHHHhCCC-hhHHHHHHHHHH
Q 003439 169 VLKLGFEWDV--FVAASLLHMYCRFGLANVARKLFDDMP---------VRDSGSWNAMISGYCQSGN-AVEALDILDEMR 236 (820)
Q Consensus 169 ~~~~g~~~~~--~~~~~li~~y~~~g~~~~A~~~f~~m~---------~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~ 236 (820)
|.+.+..++. ...|.++.-.+..+.+....++++.+. ..+-.+|+.++.+.++..- ---+..+|.-|+
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 3444444443 345667666666666666666666553 2456678888888866665 335778888888
Q ss_pred HCCCCCChHHHHhHHHhhhcC
Q 003439 237 LEGVSMDPITVASILPVCARS 257 (820)
Q Consensus 237 ~~g~~p~~~t~~~ll~a~~~~ 257 (820)
+.+.+++..-|..++++|.+.
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcC
Confidence 888888888888888887654
No 356
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=63.15 E-value=3.6e+02 Score=33.11 Aligned_cols=254 Identities=9% Similarity=-0.026 Sum_probs=119.2
Q ss_pred HHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCc
Q 003439 300 RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME 379 (820)
Q Consensus 300 ~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 379 (820)
.+...+..+|...-..-+..+.+.+. +++...+.+..+ .+|...-...+.++...+........+..+.+ .+
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~----~~ 696 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG----SP 696 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc----CC
Confidence 44444455666555555555555554 334444444432 22333333444444333221111112212221 24
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhh
Q 003439 380 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 459 (820)
Q Consensus 380 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~ 459 (820)
|..+..+.++.+...+.- ....+...+..+|...-...+.++.+.+..+.. .... -.++...-.....++.
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l----~~~l----~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVESV----AGAA----TDENREVRIAVAKGLA 767 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHH----HHHh----cCCCHHHHHHHHHHHH
Confidence 555555555555543321 122344455555655555555555555443221 1111 1233333334444555
Q ss_pred ccCChhH-HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhhCCCCCccccchHHHHHHhcCChHHHHHHH
Q 003439 460 HVGALRQ-GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM-SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFF 537 (820)
Q Consensus 460 ~~~~~~~-a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 537 (820)
..+..+. +...+..+.+ .++..+-.+.+..+++.|..+.+. .+...+..+|...-..-+.++...+. .++...+
T Consensus 768 ~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred HhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHH
Confidence 5544332 2233333332 346677777777888877765543 23344445554444445556665554 4566666
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 003439 538 RQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE 577 (820)
Q Consensus 538 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 577 (820)
-.+.+ .|+...=...+.++...+.-..+...+....+
T Consensus 844 ~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 844 VEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 66665 45655555566666664333455655555543
No 357
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=63.13 E-value=17 Score=34.85 Aligned_cols=64 Identities=13% Similarity=0.074 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 003439 589 GCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 589 ~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
+.-+..+.+.+.+++|+.+.+.- +.+| |...-..|+..++..|++++|..-++-+-++.|++..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 44466778889999999887654 4455 4557778888999999999999999888888886543
No 358
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=62.98 E-value=2.2e+02 Score=30.68 Aligned_cols=71 Identities=13% Similarity=0.239 Sum_probs=52.6
Q ss_pred hHHHHHHHhcCCHHHHHHHHhcCCCC---CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhc
Q 003439 385 NAVVDMYAKLGIINSACAVFEGLPVK---DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH 460 (820)
Q Consensus 385 ~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~ 460 (820)
..|+.-|...|++.+|.+..+++.-| ..+.+.+++.+.-+.|+....+.+++.... .|+ +|.+.+-.+|.+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~-sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFK-SGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-cCc----eeHHHhhhhhhh
Confidence 46778888899999999999887765 467788888888888888888888877766 443 444444444433
No 359
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=62.17 E-value=5.2e+02 Score=34.60 Aligned_cols=278 Identities=13% Similarity=0.045 Sum_probs=144.3
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhc-CCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCC-cccHhhHHHHhhcc
Q 003439 384 GNAVVDMYAKLGIINSACAVFEG-LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN-QGTYVSILPAYSHV 461 (820)
Q Consensus 384 ~~~li~~y~~~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~a~~~~ 461 (820)
+-.+...|+.-+++|....+... ...+ +...-|.-....|++..|...|+.+.+ ..|+ ..+++.++......
T Consensus 1423 ~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~~~da~~Cye~~~q---~~p~~~~~~~g~l~sml~~ 1496 (2382)
T KOG0890|consen 1423 YFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGNWADAAACYERLIQ---KDPDKEKHHSGVLKSMLAI 1496 (2382)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhccHHHHHHHHHHhhc---CCCccccchhhHHHhhhcc
Confidence 34444566666666665555442 2222 122344555667888888888888866 5555 56677777666666
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHHH-HHHHHHHhcCCHHHHHHHHhhCCCCCccccchH-HH-HHHh--cCChHHHHHH
Q 003439 462 GALRQGIKIHARVIKNCLCFDVFVAT-CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI-IS-CHGI--HGQGDKALNF 536 (820)
Q Consensus 462 ~~~~~a~~i~~~~~~~g~~~~~~~~~-~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l-i~-~~~~--~g~~~~A~~l 536 (820)
+.++...-..+..... ..+....++ .=+.+--+.++++....... ..+...|.+. +. ...+ ..+.-.-.+.
T Consensus 1497 ~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~ 1572 (2382)
T KOG0890|consen 1497 QHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDL 1572 (2382)
T ss_pred cchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHH
Confidence 6666555433333221 112222222 22333356666766666554 5566667665 22 1111 1222222233
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHH----------HHhHHhhCCCCChhHHHH---HHHHHHHcCCHHH
Q 003439 537 FRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF----------HMMQEEFGIKPHLKHYGC---MVDLFGRAGHLGM 603 (820)
Q Consensus 537 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~----------~~m~~~~g~~p~~~~~~~---li~~~~~~g~~~e 603 (820)
.+.+.+.-+.| +.+|+..|.+..+.++. .......++.++....+. ...-+.+.+....
T Consensus 1573 i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~ 1644 (2382)
T KOG0890|consen 1573 IENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFR 1644 (2382)
T ss_pred HHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHH
Confidence 33333321111 22222222222222111 111112234443221110 0111222222222
Q ss_pred HHHHH---HhC----CCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHH
Q 003439 604 AHNFI---QNM----PVRP-----DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVD 671 (820)
Q Consensus 604 A~~~~---~~m----~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~ 671 (820)
+.+-+ ++. ..+| -..+|-.....++..|+++.|..+.-.+.+..+ +..+.-.+......|+-..|.
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHH
Confidence 22222 111 1122 244899999999999999999999888877774 677888899999999999999
Q ss_pred HHHHHHHhCC
Q 003439 672 EVRSLARDRG 681 (820)
Q Consensus 672 ~~~~~m~~~~ 681 (820)
.+.+...+..
T Consensus 1723 ~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1723 SVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHhh
Confidence 9999887653
No 360
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=62.11 E-value=2.5e+02 Score=30.97 Aligned_cols=158 Identities=16% Similarity=0.163 Sum_probs=111.1
Q ss_pred chHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 003439 412 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVD 491 (820)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 491 (820)
-...-+++..+.++-.+.-...+..+|.. +.-+...|..++..|... ..+.-..+++++.+..+. |++...-|++
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~---~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLE---YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHH---hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 34556778888888888888888889887 555677788888888877 566777888888888764 6666777888
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCcc---------ccchHHHHHHhcCChHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHh
Q 003439 492 MYGKCGRIDDAMSLFYQVPRSSSV---------PWNAIISCHGIHGQGDKALNFFRQMLDE-GVRPDHITFVSLLTACSH 561 (820)
Q Consensus 492 ~y~~~g~~~~A~~~~~~~~~~~~~---------~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~ 561 (820)
.|-+ ++.+.+...|.++..+=+. .|..++..- ..+.+..+.+..+.... |..--.+.+.-+-.-|+.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 8877 8888888888776521111 365555421 24566666666666542 333334555556677888
Q ss_pred cCCHHHHHHHHHHhHH
Q 003439 562 SGLVSEGQRYFHMMQE 577 (820)
Q Consensus 562 ~g~~~~a~~~~~~m~~ 577 (820)
..++++|++++..+.+
T Consensus 218 ~eN~~eai~Ilk~il~ 233 (711)
T COG1747 218 NENWTEAIRILKHILE 233 (711)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 9999999999987764
No 361
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.99 E-value=89 Score=29.77 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=18.8
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCc
Q 003439 625 GACRIHGNMELGAVASDRLFEVDSENV 651 (820)
Q Consensus 625 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 651 (820)
.+|.+...+++|+.-|+++++++|...
T Consensus 176 eayek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence 345566677777777888888877544
No 362
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.35 E-value=1.7e+02 Score=28.76 Aligned_cols=57 Identities=12% Similarity=0.219 Sum_probs=34.2
Q ss_pred HHcCCHHHHHHHHHhC---CCCCCHHHHHH---HHH-H-HHh-cCChhHHHHHHHHHhccCCCCcc
Q 003439 596 GRAGHLGMAHNFIQNM---PVRPDASIWGA---LLG-A-CRI-HGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 596 ~~~g~~~eA~~~~~~m---~~~p~~~~~~~---ll~-~-~~~-~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
+..|++.+|.++|++. ....+..-|.. ++. + |.. ..|.-.+...+++-.+++|.-..
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 4567778888888766 23333333332 222 1 322 26777788888888899996433
No 363
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=61.22 E-value=42 Score=28.03 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHh
Q 003439 227 EALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH 273 (820)
Q Consensus 227 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 273 (820)
+..+-++.+....+.|++....+.|+||.+.+++..|.++++-+...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 55666666777778888888888888888888888888888877643
No 364
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=59.87 E-value=56 Score=35.21 Aligned_cols=119 Identities=14% Similarity=0.133 Sum_probs=67.7
Q ss_pred CChHHHH-HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 003439 528 GQGDKAL-NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 606 (820)
Q Consensus 528 g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~ 606 (820)
|+...|- +++.-+....-.|+.+...+. ...+.|.++++.+.+..... -+.....+..+++.-..+.|++++|..
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 4444433 333334433234444433333 35677888888777765542 233445566777777777788888887
Q ss_pred HHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 003439 607 FIQNM---PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 651 (820)
Q Consensus 607 ~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 651 (820)
+-+.| +++ +..+...-...-.+.|-++++....++++.++|...
T Consensus 379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 77666 222 222222222334556677778888888887776533
No 365
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=59.58 E-value=1.4e+02 Score=27.12 Aligned_cols=66 Identities=18% Similarity=0.149 Sum_probs=37.0
Q ss_pred hcCCHHHHHHHHHHhHHhhCCCCChh-HHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 003439 561 HSGLVSEGQRYFHMMQEEFGIKPHLK-HYGCMVDLFGRAGHLGMAHNFIQNMPVRP-DASIWGALLGACRI 629 (820)
Q Consensus 561 ~~g~~~~a~~~~~~m~~~~g~~p~~~-~~~~li~~~~~~g~~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~ 629 (820)
..++.+++..+++.|. -+.|+.. .-..-+-.+.+.|+++||..+|++....+ ....-..|+.-|..
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 4677777777777776 4455432 22222344567788888888888774332 32333344444443
No 366
>PRK11619 lytic murein transglycosylase; Provisional
Probab=59.40 E-value=3.5e+02 Score=31.66 Aligned_cols=76 Identities=16% Similarity=0.095 Sum_probs=44.4
Q ss_pred HHHHHHHhhcCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCC
Q 003439 181 AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 258 (820)
Q Consensus 181 ~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 258 (820)
-...+..+.+.+++.+..+ |..-+..+...-.....+....|+.++|......+-..|.. .......++..+.+.|
T Consensus 102 r~~~l~~La~~~~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 102 QSRFVNELARREDWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHHHHccCHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcC
Confidence 3444555666778887777 43223344444556667778888888787777776555432 2334445555554443
No 367
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=58.90 E-value=2.1e+02 Score=28.98 Aligned_cols=81 Identities=22% Similarity=0.178 Sum_probs=42.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003439 548 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGAC 627 (820)
Q Consensus 548 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~ 627 (820)
|......+...+.+.|++.+|+..|- +|-.|+...+..++......|...|+ |..+-.+++. |
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl-----~~~~~~~~~~~~ll~~~~~~~~~~e~-----------dlfi~RaVL~-y 151 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFL-----LGTDPSAFAYVMLLEEWSTKGYPSEA-----------DLFIARAVLQ-Y 151 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH-----TS-HHHHHHHHHHHHHHHHHTSS--H-----------HHHHHHHHHH-H
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHH-----hcCChhHHHHHHHHHHHHHhcCCcch-----------hHHHHHHHHH-H
Confidence 44556667778888888888888763 24445544443344433334443333 2222222332 4
Q ss_pred HhcCChhHHHHHHHHHhc
Q 003439 628 RIHGNMELGAVASDRLFE 645 (820)
Q Consensus 628 ~~~g~~~~a~~~~~~~~~ 645 (820)
...++...|...++...+
T Consensus 152 L~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 152 LCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHTTBHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 456677777777665544
No 368
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=58.85 E-value=52 Score=27.75 Aligned_cols=78 Identities=14% Similarity=0.111 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHc
Q 003439 464 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 543 (820)
Q Consensus 464 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 543 (820)
.++|..|.+.+...+- ....+.-.-+..+.+.|++++|...=.....||..+|-+|-. .+.|..+++...+.++..+
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 4556666666555443 122222223344567778887744444445777777766543 3567777777777766655
Q ss_pred C
Q 003439 544 G 544 (820)
Q Consensus 544 g 544 (820)
|
T Consensus 99 g 99 (116)
T PF09477_consen 99 G 99 (116)
T ss_dssp S
T ss_pred C
Confidence 4
No 369
>PF13934 ELYS: Nuclear pore complex assembly
Probab=57.32 E-value=1.3e+02 Score=29.81 Aligned_cols=73 Identities=16% Similarity=0.140 Sum_probs=35.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003439 555 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 631 (820)
Q Consensus 555 ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g 631 (820)
++.++...|+.+.|..+++.+. ..-.+......+... ..+|.+.||..+.+...-+-....|..++..|....
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 4555555666666666665432 111122222233333 345667777766666532111335555665555433
No 370
>PHA02875 ankyrin repeat protein; Provisional
Probab=57.27 E-value=1.1e+02 Score=33.49 Aligned_cols=77 Identities=25% Similarity=0.187 Sum_probs=32.3
Q ss_pred HhCCCchHHHHHHHHHhhhCCCCCCccc--cHHHHHhhcCCcchHHHHHHHHHhCCCCcHH--HHHHHHHHhhcCCChhH
Q 003439 121 VRCGRLSEAVDCFYQFTLTSGLRPDFYT--FPPVLKACRNLVDGKKIHCSVLKLGFEWDVF--VAASLLHMYCRFGLANV 196 (820)
Q Consensus 121 ~~~g~~~~A~~l~~~~m~~~~~~p~~~t--~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~ 196 (820)
++.|+.+-+.. +...|..|+... ..+.|..++..+. .++...+++.|..|+.. .....+...++.|+.+.
T Consensus 10 ~~~g~~~iv~~-----Ll~~g~~~n~~~~~g~tpL~~A~~~~~-~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~ 83 (413)
T PHA02875 10 ILFGELDIARR-----LLDIGINPNFEIYDGISPIKLAMKFRD-SEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKA 83 (413)
T ss_pred HHhCCHHHHHH-----HHHCCCCCCccCCCCCCHHHHHHHcCC-HHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHH
Confidence 45566544433 334566665432 1223332222222 23444555555544321 11122333444555555
Q ss_pred HHHHhcc
Q 003439 197 ARKLFDD 203 (820)
Q Consensus 197 A~~~f~~ 203 (820)
+..+++.
T Consensus 84 v~~Ll~~ 90 (413)
T PHA02875 84 VEELLDL 90 (413)
T ss_pred HHHHHHc
Confidence 5555543
No 371
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.76 E-value=16 Score=42.16 Aligned_cols=95 Identities=17% Similarity=0.292 Sum_probs=61.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 003439 555 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 634 (820)
Q Consensus 555 ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~ 634 (820)
+|.-+-+.|-.+-|+.+.+.=..++ ++...+|+++.|++.-.+.. |..+|..|+..-..+|+.+
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~ 689 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQ 689 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchH
Confidence 3444556666666666554322222 23346899999998887764 6778999999999999999
Q ss_pred HHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHH
Q 003439 635 LGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEV 673 (820)
Q Consensus 635 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~ 673 (820)
.|+..|++.... ..|+-+|.-.|+.++-.++
T Consensus 690 IaEm~yQ~~knf--------ekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 690 IAEMCYQRTKNF--------EKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred HHHHHHHHhhhh--------hheeEEEEEeCCHHHHHHH
Confidence 999999876443 2344455555555544433
No 372
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=56.73 E-value=4.1e+02 Score=31.65 Aligned_cols=255 Identities=11% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 003439 419 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 498 (820)
Q Consensus 419 i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 498 (820)
|.--...|+++.|-.++++-.. -....+++..-......+-..-+..++...-.-+-......+
T Consensus 367 I~hAlaA~d~~~aa~lle~~~~----------------~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r 430 (894)
T COG2909 367 IDHALAAGDPEMAADLLEQLEW----------------QLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHR 430 (894)
T ss_pred HHHHHhCCCHHHHHHHHHhhhh----------------hhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccC
Q ss_pred HHHHHHHHhhCC----CCCccc-------cchHHHHHHh-cCChHHHHHHHHHHHH----cCCCCChhHHHHHHHHHHhc
Q 003439 499 IDDAMSLFYQVP----RSSSVP-------WNAIISCHGI-HGQGDKALNFFRQMLD----EGVRPDHITFVSLLTACSHS 562 (820)
Q Consensus 499 ~~~A~~~~~~~~----~~~~~~-------~~~li~~~~~-~g~~~~A~~l~~~m~~----~g~~p~~~t~~~ll~a~~~~ 562 (820)
+++|..++.+.. .++... |+++-..... .|++++|.++.+.... .-..+..+.+..+..+..-.
T Consensus 431 ~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~ 510 (894)
T COG2909 431 LAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIR 510 (894)
T ss_pred hHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHh
Q ss_pred CCHHHHHHHHHHhHHhhCCCCChhHHHHHHHH-----HHHcC--CHHHHHHHHHhC------CCCCCHHHHHHHHHHHHh
Q 003439 563 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL-----FGRAG--HLGMAHNFIQNM------PVRPDASIWGALLGACRI 629 (820)
Q Consensus 563 g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~-----~~~~g--~~~eA~~~~~~m------~~~p~~~~~~~ll~~~~~ 629 (820)
|++++|..+.....+. .-.-+..++...+.. +-..| ..++.+..|... ...-.......-+..+..
T Consensus 511 G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~ 589 (894)
T COG2909 511 GELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRA 589 (894)
T ss_pred chHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHH
Q ss_pred cCChhHHHHHHHHHhccCCCCcc-------hHHhHHHHhhhcCCcchHHHHHHHHHhCCCCcCCceeE
Q 003439 630 HGNMELGAVASDRLFEVDSENVG-------YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSS 690 (820)
Q Consensus 630 ~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 690 (820)
.-+++.+..-+...+++.-.... .+..|+.++...|+.++|......+........+..-|
T Consensus 590 ~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 590 WLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred HHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
No 373
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=56.13 E-value=83 Score=34.00 Aligned_cols=129 Identities=9% Similarity=0.048 Sum_probs=86.3
Q ss_pred hcCCHHHHH-HHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHH
Q 003439 561 HSGLVSEGQ-RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP--VRPDASIWGALLGACRIHGNMELGA 637 (820)
Q Consensus 561 ~~g~~~~a~-~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~ 637 (820)
..|++..|- +++..+. .+.-.|+.. ..........|.++.+.+.+.... +.....+...++......|+.++|.
T Consensus 301 ~~gd~~aas~~~~~~lr-~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALR-NQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHH-hCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 345555554 4554444 444455533 233344667899999999998762 3344557778888888999999999
Q ss_pred HHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCCCcCCceeEEEEC
Q 003439 638 VASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVN 694 (820)
Q Consensus 638 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~ 694 (820)
...+.++.-+-++++....-+-.-...|-++++...+++....+...+.| |+..-
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g--~v~~~ 432 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG--WVNFL 432 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc--ceeee
Confidence 99999998776666655444444456688999999999887655544444 54433
No 374
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=56.05 E-value=33 Score=33.53 Aligned_cols=80 Identities=10% Similarity=0.008 Sum_probs=51.6
Q ss_pred CHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHH
Q 003439 600 HLGMAHNFIQNM-PVRPDASI-WGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 677 (820)
Q Consensus 600 ~~~eA~~~~~~m-~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 677 (820)
+++.|..-+.+. .+.|+..+ |..=+-.+.+..+++.+..-..+++++.|+..-.+..|+........+++|...+++.
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 344444433332 45666543 3334444556677777777777788888877777777888778888888888777776
Q ss_pred Hh
Q 003439 678 RD 679 (820)
Q Consensus 678 ~~ 679 (820)
.+
T Consensus 105 ~s 106 (284)
T KOG4642|consen 105 YS 106 (284)
T ss_pred HH
Confidence 43
No 375
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=55.87 E-value=93 Score=33.25 Aligned_cols=113 Identities=14% Similarity=0.180 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH------HcCCHHHHHHHHHhCCC-CC-CHHHHHH
Q 003439 551 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG------RAGHLGMAHNFIQNMPV-RP-DASIWGA 622 (820)
Q Consensus 551 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~------~~g~~~eA~~~~~~m~~-~p-~~~~~~~ 622 (820)
|+..+...|.+.|+.+.|.++.++..-.++- ++...+. ..|. .+++. .+ |...|.+
T Consensus 42 tLlqls~v~~~~gd~~~A~~lleRALf~~e~--------~~~~~F~~~~~~~~~g~--------~rL~~~~~eNR~ffla 105 (360)
T PF04910_consen 42 TLLQLSEVYRQQGDHAQANDLLERALFAFER--------AFHPSFSPFRSNLTSGN--------CRLDYRRPENRQFFLA 105 (360)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------HHHHHhhhhhcccccCc--------cccCCccccchHHHHH
Confidence 6666777778888888877777665421100 0000000 0000 01111 11 4445544
Q ss_pred H---HHHHHhcCChhHHHHHHHHHhccCCC-CcchHHhHHHHhh-hcCCcchHHHHHHHHHh
Q 003439 623 L---LGACRIHGNMELGAVASDRLFEVDSE-NVGYYVLMSNIYA-NVGKWEGVDEVRSLARD 679 (820)
Q Consensus 623 l---l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~-~~g~~~~A~~~~~~m~~ 679 (820)
+ +..+.+.|-+..|.+..+-++.++|. |+-.....++.|+ ++++++--.++.+....
T Consensus 106 l~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 106 LFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4 45677889999999999999999998 7777777888876 66777666677666544
No 376
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=55.08 E-value=30 Score=28.94 Aligned_cols=59 Identities=19% Similarity=0.166 Sum_probs=51.9
Q ss_pred hhhccccchhHHHHhhhccCCCCCceEEeecccccCCchhHHHHHhhhhCceEEEecCC
Q 003439 746 EHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSN 804 (820)
Q Consensus 746 ~~~~~~hs~~la~~~~~~~~~~~~~~~~~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~ 804 (820)
+..|..|.|.-++----.+..+|..+.|---.+-|..|...|.-.|.-+|-.|+-++.+
T Consensus 44 ~~slaTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~~ 102 (118)
T PF14427_consen 44 ESSLATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGKMRRASEKSGATIQYTWPN 102 (118)
T ss_pred hhhhhhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHHHHHhhhccCcEEEEecCC
Confidence 56688999998887766777779999999999999999999999999999999988744
No 377
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=54.79 E-value=4.9e+02 Score=31.99 Aligned_cols=46 Identities=11% Similarity=-0.024 Sum_probs=23.6
Q ss_pred CcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 003439 378 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 423 (820)
Q Consensus 378 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 423 (820)
.+|+.+...-+..+.+.+..+....+...+..+|...-...+.++.
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~ 677 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLR 677 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5566666666666666665444344444444444433333334433
No 378
>PHA02875 ankyrin repeat protein; Provisional
Probab=54.68 E-value=3.2e+02 Score=29.78 Aligned_cols=197 Identities=17% Similarity=0.104 Sum_probs=93.9
Q ss_pred HHHHHHhCCCCChhh--hHHHHHHHHccCChHHHHHHhcccCCCCcc--hHHHHHHHHHhCCCchHHHHHHHHHhhhCCC
Q 003439 67 HALLVVSGKIKTVFS--STKLVNFYANLGDLSFSRHTFDHISYRNVY--TWNSMISVYVRCGRLSEAVDCFYQFTLTSGL 142 (820)
Q Consensus 67 ~~~~~~~g~~~~~~~--~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~ 142 (820)
...+++.|..++... ..+.+...+..|+.+-+..+++.-..++.. ...+.+...++.|+.+.+..+++. |.
T Consensus 18 v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-----~~ 92 (413)
T PHA02875 18 ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDL-----GK 92 (413)
T ss_pred HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHc-----CC
Confidence 344466777666543 444556666778877666666543333221 112334445567777665544432 22
Q ss_pred CC----CccccHHHHHhhcCCcchHHHHHHHHHhCCCCcHHH--HHHHHHHhhcCCChhHHHHHhccCCCC---CcccHH
Q 003439 143 RP----DFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFV--AASLLHMYCRFGLANVARKLFDDMPVR---DSGSWN 213 (820)
Q Consensus 143 ~p----~~~t~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~ 213 (820)
.. +..-.+.+.-++. .+ -.++...+++.|..++... ..+.+...+..|+.+-+..+++.-... |..-++
T Consensus 93 ~~~~~~~~~g~tpL~~A~~-~~-~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T 170 (413)
T PHA02875 93 FADDVFYKDGMTPLHLATI-LK-KLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCT 170 (413)
T ss_pred cccccccCCCCCHHHHHHH-hC-CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCC
Confidence 11 1111223333322 12 1345566667776655321 223445555677777766666554322 223333
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHH---HhHHHhhhcCCChHHHHHHHHHHHHhCCCccH
Q 003439 214 AMISGYCQSGNAVEALDILDEMRLEGVSMDPITV---ASILPVCARSDNILSGLLIHLYIVKHGLEFNL 279 (820)
Q Consensus 214 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~ 279 (820)
.+. ..+..|+.+ +.+.+.+.|..|+...- .+++...+..|+.+ +.+.+++.|..++.
T Consensus 171 pL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 171 PLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred HHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 333 334455543 34445556666654321 13333233344443 34444556655543
No 379
>PRK13342 recombination factor protein RarA; Reviewed
Probab=54.40 E-value=2.3e+02 Score=30.98 Aligned_cols=100 Identities=12% Similarity=0.153 Sum_probs=56.9
Q ss_pred CCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhcc---CCCCchHHHHHH
Q 003439 241 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM---MERDVVSWNSII 317 (820)
Q Consensus 241 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m---~~~d~~~~~~li 317 (820)
..+......++..+ .|+...+..+++.+...+...+ .+....++... ..++......++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHHHhhhhhccCCCccHHHHHH
Confidence 44555555555443 6788777777777654321111 12222222211 122333455566
Q ss_pred HHHHh---CCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 003439 318 AAYEQ---SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 358 (820)
Q Consensus 318 ~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 358 (820)
+++.+ .++++.|+.++..|.+.|..|....-..+..++...
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 66655 478999999999999999888765555555444333
No 380
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=53.73 E-value=1.1e+02 Score=34.08 Aligned_cols=24 Identities=25% Similarity=0.624 Sum_probs=20.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC
Q 003439 487 TCLVDMYGKCGRIDDAMSLFYQVP 510 (820)
Q Consensus 487 ~~li~~y~~~g~~~~A~~~~~~~~ 510 (820)
..|+.-|.+++++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 457778999999999999998887
No 381
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=53.13 E-value=1.2e+02 Score=25.61 Aligned_cols=80 Identities=14% Similarity=0.100 Sum_probs=50.3
Q ss_pred CChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHH
Q 003439 258 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 337 (820)
Q Consensus 258 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 337 (820)
...++|..|.+.+...+- ....+--.-+..+...|++++|...=.....||...|-+|-.. +.|..+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAW--KLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHHHHH
Confidence 345667777777666653 2333444445567788999999665566677899999887665 6788888888887775
Q ss_pred HcC
Q 003439 338 QAG 340 (820)
Q Consensus 338 ~~g 340 (820)
..|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 443
No 382
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.91 E-value=72 Score=27.19 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=22.2
Q ss_pred ccchHHHHHHhcCChHHHHHHHHHHHH
Q 003439 516 PWNAIISCHGIHGQGDKALNFFRQMLD 542 (820)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 542 (820)
-|..|+.-|..+|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 377888888888888888888888776
No 383
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=51.10 E-value=4.1e+02 Score=30.01 Aligned_cols=377 Identities=12% Similarity=0.054 Sum_probs=177.2
Q ss_pred HHHHHHHHhhcCCChhHHHHHhccCCC--CCcc-cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhh-
Q 003439 180 VAASLLHMYCRFGLANVARKLFDDMPV--RDSG-SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCA- 255 (820)
Q Consensus 180 ~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~- 255 (820)
.|+.||.---...+++.++.+++.+.. |... -|-....-=.+.|..+.+.++|++-.. |++-....|...+.-+.
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n 125 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKN 125 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhc
Confidence 344444433333444555666655542 3222 234444444566777888888877764 35545555555554443
Q ss_pred cCCChHHHHHHHHHHHHh-CCC-ccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHh---CC------
Q 003439 256 RSDNILSGLLIHLYIVKH-GLE-FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ---SN------ 324 (820)
Q Consensus 256 ~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~---~g------ 324 (820)
..|+.+..+..|+.++.. |.+ .+...|...|..-..+++......+++++.+-....++..-.-|.+ ..
T Consensus 126 ~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~ 205 (577)
T KOG1258|consen 126 NNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILL 205 (577)
T ss_pred cCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhc
Confidence 456666777777777653 322 2345666777766777788888888877765333333332222221 11
Q ss_pred ChhhHHHHHHHHHH--------------------cCCCCCcchHHH-HH-HHHH-------hcCcchhhhhHHHHHHHhC
Q 003439 325 DPITAHGFFTTMQQ--------------------AGIQPDLLTLVS-LT-SIVA-------QLNDCRNSRSVHGFIMRRG 375 (820)
Q Consensus 325 ~~~~A~~~~~~m~~--------------------~g~~pd~~t~~~-ll-~a~~-------~~~~~~~a~~i~~~~~~~g 375 (820)
..+++.++-..... .+-+-+..+... ++ ..+. ........+..++.-++.-
T Consensus 206 ~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~Ikrp 285 (577)
T KOG1258|consen 206 SIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRP 285 (577)
T ss_pred CHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhcccc
Confidence 12222222111111 000001111100 11 0000 0011111111122222211
Q ss_pred ------CcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCC---CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCC
Q 003439 376 ------WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK---DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP 446 (820)
Q Consensus 376 ------~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p 446 (820)
....+...|..-++.-.+.|+.+...-+|+....+ =...|--.+.-.-..|+.+-|-.++..-.+ - ..|
T Consensus 286 Yfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~-i-~~k 363 (577)
T KOG1258|consen 286 YFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACK-I-HVK 363 (577)
T ss_pred ccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhh-h-cCC
Confidence 01234556666777777778888777777766543 122344444444444777666666655443 1 122
Q ss_pred CcccHhhHHHH-hhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH---HHHhhCC--CCCccccchH
Q 003439 447 NQGTYVSILPA-YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM---SLFYQVP--RSSSVPWNAI 520 (820)
Q Consensus 447 d~~t~~~ll~a-~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~---~~~~~~~--~~~~~~~~~l 520 (820)
+......+-.. +-..|+...|..+++.+...- +.-+.+-..-+.+..+.|..+.+. +++.... +.+....+.+
T Consensus 364 ~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l 442 (577)
T KOG1258|consen 364 KTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKL 442 (577)
T ss_pred CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHH
Confidence 22211111111 344567788888877776653 222223333455666677777766 3333322 1111112222
Q ss_pred HHH-----HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 003439 521 ISC-----HGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 561 (820)
Q Consensus 521 i~~-----~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 561 (820)
..- +.-.++.+.|..++.+|.+. .+++...|..++.-+..
T Consensus 443 ~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 443 YVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELI 487 (577)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHh
Confidence 211 22345666666666666663 33344455555554433
No 384
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=50.51 E-value=2.1e+02 Score=30.83 Aligned_cols=51 Identities=10% Similarity=0.070 Sum_probs=34.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHH--hcCCHHHHHHHHHHhHH
Q 003439 526 IHGQGDKALNFFRQMLDEGVRPDHI--TFVSLLTACS--HSGLVSEGQRYFHMMQE 577 (820)
Q Consensus 526 ~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~ 577 (820)
..+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 567888888888888886 555554 3444444544 35567788888877654
No 385
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=49.28 E-value=22 Score=21.87 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=20.9
Q ss_pred CChhHHHHHHHHHhccCCCCcchHHhHHH
Q 003439 631 GNMELGAVASDRLFEVDSENVGYYVLMSN 659 (820)
Q Consensus 631 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 659 (820)
|+.+.+..+|++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677888888888877877776665543
No 386
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=49.23 E-value=31 Score=22.62 Aligned_cols=30 Identities=13% Similarity=-0.057 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCChhHHHHH--HHHHhccCCC
Q 003439 620 WGALLGACRIHGNMELGAVA--SDRLFEVDSE 649 (820)
Q Consensus 620 ~~~ll~~~~~~g~~~~a~~~--~~~~~~~~p~ 649 (820)
|-++...+...|++++|+.+ ++-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 45666677788888888888 4466666654
No 387
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=48.86 E-value=21 Score=35.91 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=40.5
Q ss_pred HHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH
Q 003439 596 GRAGHLGMAHNFIQNM-PVRPDAS-IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 655 (820)
Q Consensus 596 ~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 655 (820)
.+.|+.++|..+|+.. ...|+.. +..-+..-...++++-+|.++|-+++.+.|.+..+.+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 3577788888877754 4455433 4444555555667777888888888888888777655
No 388
>PRK09169 hypothetical protein; Validated
Probab=48.49 E-value=8.3e+02 Score=32.84 Aligned_cols=330 Identities=8% Similarity=-0.029 Sum_probs=167.3
Q ss_pred CcchHHHHHHHHHhcCcchhhhhH----HHHHHHhCC--cCcchhHHhHHHHHHHhcCCHHHHHH----HHhcCC-----
Q 003439 344 DLLTLVSLTSIVAQLNDCRNSRSV----HGFIMRRGW--FMEDVIIGNAVVDMYAKLGIINSACA----VFEGLP----- 408 (820)
Q Consensus 344 d~~t~~~ll~a~~~~~~~~~a~~i----~~~~~~~g~--~~~~~~~~~~li~~y~~~g~~~~A~~----~f~~~~----- 408 (820)
|..-+...++++++-..-+.+... -..+..... ...+..-....+++++|..+.+.+.. +-+.+.
T Consensus 287 ~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~l 366 (2316)
T PRK09169 287 DPQGVANALNALSKWPDTEACRQAAEALAERLAQERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLARDAGL 366 (2316)
T ss_pred CHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhChhh
Confidence 445566667777766544332222 111111100 12333444455666777666554322 222221
Q ss_pred --CCCchHHHHHHHHHHHcCChH----HHHHHHHhhhhcCCC--CCCcccHhhHHHHhhccCChhHHHHHHHHH----HH
Q 003439 409 --VKDVISWNTLITGYAQNGLAS----EAIEVFQMMEECNEI--NPNQGTYVSILPAYSHVGALRQGIKIHARV----IK 476 (820)
Q Consensus 409 --~~~~~~~~~li~~~~~~g~~~----~A~~l~~~m~~~~g~--~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~----~~ 476 (820)
.-|..-....+.++.+-++-+ .|..+...+....+. .-|..-....+.+|++-+.-+.+.+....+ ..
T Consensus 367 ~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~rl~~ 446 (2316)
T PRK09169 367 RRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALAARLAA 446 (2316)
T ss_pred hhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 114445566677777766543 233344443331221 235566778889999887766444332222 11
Q ss_pred h---CCCCchhHHHHHHHHHHhcCCHHH----HHHHHhhCC-------CCCccccchHHHHHHhcCChHHHHH----HHH
Q 003439 477 N---CLCFDVFVATCLVDMYGKCGRIDD----AMSLFYQVP-------RSSSVPWNAIISCHGIHGQGDKALN----FFR 538 (820)
Q Consensus 477 ~---g~~~~~~~~~~li~~y~~~g~~~~----A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~----l~~ 538 (820)
. .-..+..-....+.+++|.++-+. |..+...+. .-+..-....+.++++-++.+.... +..
T Consensus 447 ~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~ 526 (2316)
T PRK09169 447 DARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAAEALAD 526 (2316)
T ss_pred chhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 1 112345666677788888776442 333443332 1233336667888888887655433 222
Q ss_pred HHHHc---CCCCChhHHHHHHHHHHhcCCHHHHH----HHHHHhHHhhC--CCCChhHHHHHHHHHHHcCCHHH----HH
Q 003439 539 QMLDE---GVRPDHITFVSLLTACSHSGLVSEGQ----RYFHMMQEEFG--IKPHLKHYGCMVDLFGRAGHLGM----AH 605 (820)
Q Consensus 539 ~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~----~~~~~m~~~~g--~~p~~~~~~~li~~~~~~g~~~e----A~ 605 (820)
++... --.-|..-+...++++++-.+.+.+. .+...+..+-+ -..+.......+.+++|-+.-.. |.
T Consensus 527 rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~Aa~ 606 (2316)
T PRK09169 527 RLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDACRAAAE 606 (2316)
T ss_pred HHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHHHHH
Confidence 22221 01124455677888888877643322 23333322111 12245667778888988775432 33
Q ss_pred HHHHhCC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc---cCC-----CCcchHHhHHHHhhhcCCcchHH
Q 003439 606 NFIQNMP------VRPDASIWGALLGACRIHGNMELGAVASDRLFE---VDS-----ENVGYYVLMSNIYANVGKWEGVD 671 (820)
Q Consensus 606 ~~~~~m~------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~p-----~~~~~~~~l~~~y~~~g~~~~A~ 671 (820)
.+..... ..-|..-+..+++++.+-.+.+....+...+-+ .+| -++.....+.|.+++-.+.+.+.
T Consensus 607 aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~~c~ 686 (2316)
T PRK09169 607 ALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEAACR 686 (2316)
T ss_pred HHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcHHHH
Confidence 3333331 123667788899999998887765554443322 111 12333445556666666544433
Q ss_pred HH
Q 003439 672 EV 673 (820)
Q Consensus 672 ~~ 673 (820)
+.
T Consensus 687 ~A 688 (2316)
T PRK09169 687 AA 688 (2316)
T ss_pred HH
Confidence 33
No 389
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=48.43 E-value=2.4e+02 Score=28.10 Aligned_cols=162 Identities=13% Similarity=0.107 Sum_probs=84.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHc
Q 003439 520 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH-SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 598 (820)
Q Consensus 520 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 598 (820)
++...-+.|+++++++.++++...+...+..=-+.|..+|-. .|....+++++..+..+..-..+ .....++.-|-+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 456667788889999999999887655555544545555532 34556666666666544222222 2222333322211
Q ss_pred ------CCHHHHHHHHHhC--CC--CCCH-HHHHHHHHHHHh------cC-----ChhHHHHHHHHHhc-----cCCCCc
Q 003439 599 ------GHLGMAHNFIQNM--PV--RPDA-SIWGALLGACRI------HG-----NMELGAVASDRLFE-----VDSENV 651 (820)
Q Consensus 599 ------g~~~eA~~~~~~m--~~--~p~~-~~~~~ll~~~~~------~g-----~~~~a~~~~~~~~~-----~~p~~~ 651 (820)
.--.+..++++.- |. .+.. +.|.-+-+=|.+ .| -.+.|...|+++.+ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 1223455555553 11 1111 222222222211 11 23677778887765 567666
Q ss_pred chHHhHH----HHhhhcCCcchHHHHHHHHHhCCC
Q 003439 652 GYYVLMS----NIYANVGKWEGVDEVRSLARDRGL 682 (820)
Q Consensus 652 ~~~~~l~----~~y~~~g~~~~A~~~~~~m~~~~~ 682 (820)
...-+.. -.|--.|+.++|.++-+...+..+
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 6443322 235668999999998888766543
No 390
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.74 E-value=2.6e+02 Score=26.74 Aligned_cols=89 Identities=10% Similarity=0.013 Sum_probs=58.4
Q ss_pred HhhhcCCChHHHHHHHHHHHHhCCCcc--HHHHHHHHHHHHccCCHHHHHHHHhccCCCCchH--HHHHHHHHHhCCChh
Q 003439 252 PVCARSDNILSGLLIHLYIVKHGLEFN--LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS--WNSIIAAYEQSNDPI 327 (820)
Q Consensus 252 ~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~--~~~li~~~~~~g~~~ 327 (820)
+.+...++++.|...+...+...-+.+ ..+--.|.......|.+|+|...++....++-.+ ...-...+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 445566677777766666554322211 1222345566777899999999998887765444 223336788889999
Q ss_pred hHHHHHHHHHHcC
Q 003439 328 TAHGFFTTMQQAG 340 (820)
Q Consensus 328 ~A~~~~~~m~~~g 340 (820)
+|..-|.+.+..+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 9999998887765
No 391
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=47.60 E-value=2.1e+02 Score=25.86 Aligned_cols=77 Identities=14% Similarity=0.202 Sum_probs=53.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHhccC---------CCCchHHHHHHHHHHhCCC-hhhHHHHHHHHHHcCCCCCcchHHHH
Q 003439 282 SNNLINMYAKFGMMRHALRVFDQMM---------ERDVVSWNSIIAAYEQSND-PITAHGFFTTMQQAGIQPDLLTLVSL 351 (820)
Q Consensus 282 ~~~li~~y~~~g~~~~A~~~f~~m~---------~~d~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~pd~~t~~~l 351 (820)
.|.++.-.+..+.+.....+++.+. ..+-.+|+.++.+..+..- ---+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4455554455555555555554442 2456678899988866655 44577889999888889999999999
Q ss_pred HHHHHhc
Q 003439 352 TSIVAQL 358 (820)
Q Consensus 352 l~a~~~~ 358 (820)
+++|.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 9988765
No 392
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=47.48 E-value=50 Score=36.60 Aligned_cols=97 Identities=10% Similarity=0.001 Sum_probs=59.8
Q ss_pred hcCCHHHHHHHHHHhHHhhCCCCCh--hHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHH
Q 003439 561 HSGLVSEGQRYFHMMQEEFGIKPHL--KHYGCMVDLFGRAGHLGMAHNFIQNM-PV-RPDASIWGALLGACRIHGNMELG 636 (820)
Q Consensus 561 ~~g~~~~a~~~~~~m~~~~g~~p~~--~~~~~li~~~~~~g~~~eA~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a 636 (820)
..|+...|...+.... ...|.. .....|..++.+.|...+|-.++.+. .+ ...+.++.++.+++....+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 3566666666555443 333321 22334555555666666666665443 21 22345667788888888888889
Q ss_pred HHHHHHHhccCCCCcchHHhHHHH
Q 003439 637 AVASDRLFEVDSENVGYYVLMSNI 660 (820)
Q Consensus 637 ~~~~~~~~~~~p~~~~~~~~l~~~ 660 (820)
++.+++++.++|+++..-..|..+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHH
Confidence 999999998888888766655443
No 393
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=47.40 E-value=24 Score=28.90 Aligned_cols=42 Identities=7% Similarity=0.090 Sum_probs=23.4
Q ss_pred HHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 638 VASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 638 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
..+++.++.+|+|...-..++..+...|++++|.+.+-.+..
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334455556666666666666666666666666655555543
No 394
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=46.35 E-value=2e+02 Score=29.11 Aligned_cols=88 Identities=15% Similarity=0.192 Sum_probs=46.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHH--cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHH-
Q 003439 521 ISCHGIHGQGDKALNFFRQMLD--EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR- 597 (820)
Q Consensus 521 i~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~- 597 (820)
|.+++..+++.+++...-+--+ +.++|...-. -|-.|++.+....+.++-..-.+. .-.-+..-|.+++.+|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleL--CILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILEL--CILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 4455555555555544332222 1133333222 233467777777777666555543 112223347777666654
Q ss_pred ----cCCHHHHHHHHHhC
Q 003439 598 ----AGHLGMAHNFIQNM 611 (820)
Q Consensus 598 ----~g~~~eA~~~~~~m 611 (820)
.|.++||++++..-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 47888888877443
No 395
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=46.12 E-value=63 Score=25.61 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=18.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCCHHHHHH
Q 003439 528 GQGDKALNFFRQMLDEGVRPDH--ITFVSLLTACSHSGLVSEGQR 570 (820)
Q Consensus 528 g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~ 570 (820)
.+.++|+..|+..++.-..|.. .++..++.+++..|++++.++
T Consensus 20 ~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 20 NETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred chHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554443222211 134444445555555444444
No 396
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=46.01 E-value=38 Score=27.95 Aligned_cols=52 Identities=13% Similarity=0.123 Sum_probs=36.3
Q ss_pred HhcCChhHHHHHHHHHhccCCCC---------cchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 628 RIHGNMELGAVASDRLFEVDSEN---------VGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 628 ~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
.+.||+..|.+.+.+.++..... ......++.++...|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 46677778877777766533221 12334578889999999999998888765
No 397
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=44.84 E-value=51 Score=26.08 Aligned_cols=47 Identities=11% Similarity=0.142 Sum_probs=30.7
Q ss_pred hcCCHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHHHcCCHHHHHHH
Q 003439 561 HSGLVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFGRAGHLGMAHNF 607 (820)
Q Consensus 561 ~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~eA~~~ 607 (820)
+....++|+..|....++..-.|+. .+.++|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777888887777653333322 3566777777777777777665
No 398
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.93 E-value=61 Score=31.01 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 003439 612 PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS 648 (820)
Q Consensus 612 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 648 (820)
...|+..++..++.++...|+.++|.+..+++..+-|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3467777777777777777777777777777777777
No 399
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=43.72 E-value=1.7e+02 Score=30.09 Aligned_cols=117 Identities=16% Similarity=0.168 Sum_probs=59.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChh---HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH
Q 003439 520 IISCHGIHGQGDKALNFFRQMLDEGVRPDHI---TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 596 (820)
Q Consensus 520 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~ 596 (820)
|..+-.+.|+..+|.+.|+.+.+. .|=.. .-..|+.+|....-+.+...++.+.-+- . .|...+ -|.-.++.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi-s-lPkSA~-icYTaALL 355 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI-S-LPKSAA-ICYTAALL 355 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c-CcchHH-HHHHHHHH
Confidence 444555678888888888877663 34221 2234666776666666655555443311 1 122111 11111221
Q ss_pred HcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH
Q 003439 597 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 655 (820)
Q Consensus 597 ~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 655 (820)
++..+-++ +.||..+-..|-.+ -..|.++..++.+.+|.-+.+..
T Consensus 356 ------K~RAVa~k--Fspd~asrRGLS~A------E~~AvEAihRAvEFNPHVPkYLL 400 (556)
T KOG3807|consen 356 ------KTRAVSEK--FSPETASRRGLSTA------EINAVEAIHRAVEFNPHVPKYLL 400 (556)
T ss_pred ------HHHHHHhh--cCchhhhhccccHH------HHHHHHHHHHHhhcCCCCcHHHH
Confidence 22222222 34565543333222 12477888889999997665443
No 400
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.62 E-value=75 Score=30.39 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 003439 563 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 611 (820)
Q Consensus 563 g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m 611 (820)
.+.+......+.+.+.....|++.+|..++.++...|+.++|.+..+++
T Consensus 122 ~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 122 PDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333333333333333345666667777777777777777777666665
No 401
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=43.60 E-value=9.8e+02 Score=32.28 Aligned_cols=362 Identities=14% Similarity=0.067 Sum_probs=167.2
Q ss_pred hcCCChHHHHHHHHHHHHhCC--CccHHHHHHHHHHHHccCCHHHHHHHHhc-cCCCCchHHHHHHHHHHhCCChhhHHH
Q 003439 255 ARSDNILSGLLIHLYIVKHGL--EFNLFVSNNLINMYAKFGMMRHALRVFDQ-MMERDVVSWNSIIAAYEQSNDPITAHG 331 (820)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~-m~~~d~~~~~~li~~~~~~g~~~~A~~ 331 (820)
-+.+.+..|...++.-..... ......+-.+...|+.-+++|....+... ...++. ..-|.-....|+++.|..
T Consensus 1394 frc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~~~da~~ 1470 (2382)
T KOG0890|consen 1394 FRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGNWADAAA 1470 (2382)
T ss_pred HhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhccHHHHHH
Confidence 344555555555554200000 11233444455578877777777666653 333322 233444556788888888
Q ss_pred HHHHHHHcCCCCC-cchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhH-HhHHHHHHHhcCCHHHHHHHHhcCCC
Q 003439 332 FFTTMQQAGIQPD-LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII-GNAVVDMYAKLGIINSACAVFEGLPV 409 (820)
Q Consensus 332 ~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~-~~~li~~y~~~g~~~~A~~~f~~~~~ 409 (820)
.|+.+.+. .|+ ..+++-++......+.++......+...... .+...- ++.=+.+--+.++++....... .
T Consensus 1471 Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~--se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~ 1543 (2382)
T KOG0890|consen 1471 CYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR--SEEVDELNSLGVEAAWRLSQWDLLESYLS---D 1543 (2382)
T ss_pred HHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhcc--CHHHHHHHHHHHHHHhhhcchhhhhhhhh---c
Confidence 88888754 444 5567777776666666665554333332221 222222 2222333355666665555544 4
Q ss_pred CCchHHHHH-H-HHHHHcCChH--HHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhH
Q 003439 410 KDVISWNTL-I-TGYAQNGLAS--EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 485 (820)
Q Consensus 410 ~~~~~~~~l-i-~~~~~~g~~~--~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 485 (820)
++..+|.+. + ..+.+..+-+ .-.++.+.+++ .-+. =+.+|+..|.+ ...
T Consensus 1544 ~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~-~~i~--------~lsa~s~~~Sy------------------~~~ 1596 (2382)
T KOG0890|consen 1544 RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRE-LVIE--------NLSACSIEGSY------------------VRS 1596 (2382)
T ss_pred ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHH-Hhhh--------hHHHhhccchH------------------HHH
Confidence 556666654 2 2222221111 11123333332 1010 11222222211 122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCccc-----cchHHHHHHhcCChHHHHHHHHH-HHHcCCCCC-----hhHHHH
Q 003439 486 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-----WNAIISCHGIHGQGDKALNFFRQ-MLDEGVRPD-----HITFVS 554 (820)
Q Consensus 486 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~l~~~-m~~~g~~p~-----~~t~~~ 554 (820)
|..++....-+. ++.-.+.+......+... |-.-+.--....+..+-+--+++ +......|+ ..+|..
T Consensus 1597 Y~~~~kLH~l~e-l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLq 1675 (2382)
T KOG0890|consen 1597 YEILMKLHLLLE-LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQ 1675 (2382)
T ss_pred HHHHHHHHHHHH-HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHH
Confidence 333333332221 111122222222111111 22222111111112222222222 222222332 236777
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-----C-----CCCCHHHHHHHH
Q 003439 555 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-----P-----VRPDASIWGALL 624 (820)
Q Consensus 555 ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-----~-----~~p~~~~~~~ll 624 (820)
....+..+|.++.|....-...+. + .| ..+--....+...|+-..|+.++++. + .++.+..-|.++
T Consensus 1676 sAriaR~aG~~q~A~nall~A~e~-r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i 1751 (2382)
T KOG0890|consen 1676 SARIARLAGHLQRAQNALLNAKES-R-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLI 1751 (2382)
T ss_pred HHHHHHhcccHHHHHHHHHhhhhc-c-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhh
Confidence 777788888888888776555432 2 33 34445567777888888888877654 1 111122233333
Q ss_pred HH--------H-HhcCC--hhHHHHHHHHHhccCCCCcchHHhHH
Q 003439 625 GA--------C-RIHGN--MELGAVASDRLFEVDSENVGYYVLMS 658 (820)
Q Consensus 625 ~~--------~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~ 658 (820)
.. | ...|+ .+.-++.|..+.++.|.....|..|+
T Consensus 1752 ~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1752 FKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 22 1 12233 34566778888888886666555555
No 402
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=43.43 E-value=68 Score=28.89 Aligned_cols=66 Identities=17% Similarity=0.083 Sum_probs=45.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcch
Q 003439 601 LGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEG 669 (820)
Q Consensus 601 ~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 669 (820)
-+.|.++.+-|+ .....-.........|++..|..+.+.++..+|+|...-...+++|...|.-.+
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 356777777775 222223344556779999999999999999999999988888888877765444
No 403
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=42.04 E-value=1.2e+02 Score=25.76 Aligned_cols=28 Identities=21% Similarity=0.427 Sum_probs=25.2
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 003439 210 GSWNAMISGYCQSGNAVEALDILDEMRL 237 (820)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 237 (820)
.-|..|+.-|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3599999999999999999999998876
No 404
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=41.96 E-value=10 Score=28.52 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=16.1
Q ss_pred ceEEEecCCccccccCCcCC
Q 003439 796 REIIVRDSNRFHHFKDGICS 815 (820)
Q Consensus 796 r~i~~rd~~~~h~f~~g~cs 815 (820)
..|-+.|++-.|+|+||+-+
T Consensus 8 ksi~LkDGstvyiFKDGKMa 27 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMA 27 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EE
T ss_pred eeEecCCCCEEEEEcCCcee
Confidence 45778999999999999854
No 405
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=41.12 E-value=1.8e+02 Score=29.38 Aligned_cols=86 Identities=9% Similarity=0.033 Sum_probs=39.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHC--CCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHc-
Q 003439 215 MISGYCQSGNAVEALDILDEMRLE--GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK- 291 (820)
Q Consensus 215 li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~- 291 (820)
=|.+++..+++.+++...-+--+. .++|... -.-|-.|++.+......++-...++..-.-+..-|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIl--eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKIL--ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 367777777877777655443321 1222222 22222344455555444444444432212222234444444432
Q ss_pred ----cCCHHHHHHHH
Q 003439 292 ----FGMMRHALRVF 302 (820)
Q Consensus 292 ----~g~~~~A~~~f 302 (820)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 35555555444
No 406
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=41.01 E-value=32 Score=37.10 Aligned_cols=123 Identities=14% Similarity=0.176 Sum_probs=64.6
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc-------------cchHHHHH----
Q 003439 462 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-------------WNAIISCH---- 524 (820)
Q Consensus 462 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~-------------~~~li~~~---- 524 (820)
+.+++-.++++.+.+.|- +| +...-||.|.+.+++++|...+++-.+.+... -..++...
T Consensus 68 ~~~~e~i~lL~~l~~~g~-ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~Pv 144 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEGG-AD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPL 144 (480)
T ss_pred CcHHHHHHHHHHHHHccC-CC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCe
Confidence 445666667777766641 22 34456788888888888888777554322111 11122221
Q ss_pred -HhcCChHHHHHHHHHHHHcCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHhHH------hhCCCCChhHHHHH
Q 003439 525 -GIHGQGDKALNFFRQMLDEGVRPDH---ITFVSLLTACSHSGLVSEGQRYFHMMQE------EFGIKPHLKHYGCM 591 (820)
Q Consensus 525 -~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~------~~g~~p~~~~~~~l 591 (820)
.+||-+ +|..+++-+...|+.... ++|+. -|++.=-+++++..|+.+-+ +.|+..|.+.+.+|
T Consensus 145 QvRHGtp-DarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpL 217 (480)
T TIGR01503 145 QIRHGTP-DARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPL 217 (480)
T ss_pred eccCCCC-cHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCC
Confidence 233333 466677777777765432 34432 23444445666655543321 22666566555543
No 407
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=40.71 E-value=50 Score=22.83 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=14.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 003439 520 IISCHGIHGQGDKALNFFRQMLDE 543 (820)
Q Consensus 520 li~~~~~~g~~~~A~~l~~~m~~~ 543 (820)
+..+|...|+.+.|.+++++.+..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445556666666666666666543
No 408
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=40.30 E-value=1.6e+02 Score=24.13 Aligned_cols=62 Identities=21% Similarity=0.091 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC--cchHHhHHHHhhhcCCcc-hHHHHHHHH
Q 003439 616 DASIWGALLGACRIHGNMELGAVASDRLFEVDSEN--VGYYVLMSNIYANVGKWE-GVDEVRSLA 677 (820)
Q Consensus 616 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~~g~~~-~A~~~~~~m 677 (820)
|....-.+...+...|+++.|.+.+-.++..+|+. ...-..|..++...|.-+ -+.+++++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 44567778888888899999988888888877653 555567777777777644 445555554
No 409
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.25 E-value=4e+02 Score=26.76 Aligned_cols=187 Identities=11% Similarity=0.139 Sum_probs=119.1
Q ss_pred cCChHHHHHHHHhhhhcCCCCCCc--ccHhhHHHHhhccCChhHHHHHHHHHHH---hCC--CCchhHHHHHHHHHHhcC
Q 003439 425 NGLASEAIEVFQMMEECNEINPNQ--GTYVSILPAYSHVGALRQGIKIHARVIK---NCL--CFDVFVATCLVDMYGKCG 497 (820)
Q Consensus 425 ~g~~~~A~~l~~~m~~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~---~g~--~~~~~~~~~li~~y~~~g 497 (820)
..++++|+.-|++..+..|-+.+. ..+..++....+.+++++....+..++. ..+ .-+....|++++--+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 457899999999988733322221 2344567788899999988877766643 212 224556788888777777
Q ss_pred CHHHHHHHHhhCC-----CCCcccc----chHHHHHHhcCChHHHHHHHHHHHHcCCCC----C-------hhHHHHHHH
Q 003439 498 RIDDAMSLFYQVP-----RSSSVPW----NAIISCHGIHGQGDKALNFFRQMLDEGVRP----D-------HITFVSLLT 557 (820)
Q Consensus 498 ~~~~A~~~~~~~~-----~~~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----~-------~~t~~~ll~ 557 (820)
+.+--.+.++.-. .++...| +-|...|...|.+.+-.++++++...--.. | ...|..=+.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 7666666554332 3344444 457778888889999888888887642111 1 124656677
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHH----HHHHHHcCCHHHHH-HHHHhC
Q 003439 558 ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM----VDLFGRAGHLGMAH-NFIQNM 611 (820)
Q Consensus 558 a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l----i~~~~~~g~~~eA~-~~~~~m 611 (820)
.|....+-..-..+++....-..-.|.+.....+ ..+..|.|++++|. ++|+..
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 7777777777777777665443455666544433 34556788888876 444443
No 410
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=39.53 E-value=53 Score=22.69 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=15.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHC
Q 003439 215 MISGYCQSGNAVEALDILDEMRLE 238 (820)
Q Consensus 215 li~~~~~~g~~~~A~~l~~~m~~~ 238 (820)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445666666666666666666543
No 411
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=39.53 E-value=40 Score=32.74 Aligned_cols=59 Identities=22% Similarity=0.349 Sum_probs=45.7
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 003439 594 LFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 594 ~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
+..+.|+.+.|.+++.+. ..-| ....|-.+...-.+.|+.+.|.+.+++.++++|++..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 445677888888888776 4444 4558888888888999999999999999999887644
No 412
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=39.32 E-value=91 Score=21.95 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=22.7
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHH
Q 003439 218 GYCQSGNAVEALDILDEMRLEGVSMDPITVASILP 252 (820)
Q Consensus 218 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 252 (820)
...+.|-..++..++++|.+.|+..+...|..+++
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34466666677777777777776666666655554
No 413
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.17 E-value=7.7e+02 Score=29.80 Aligned_cols=130 Identities=15% Similarity=0.156 Sum_probs=71.9
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCC--ccHHHHHHHHHH
Q 003439 211 SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE--FNLFVSNNLINM 288 (820)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~ 288 (820)
-|..|+.-|...|+.++|+++|.+.....-.-|. ...+.-..+.+.+.+.+-+ +-+..|...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~-------------~~~~~~e~ii~YL~~l~~~~~~Li~~y~~w--- 569 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDS-------------FQLDGLEKIIEYLKKLGAENLDLILEYADW--- 569 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcccccccc-------------chhhhHHHHHHHHHHhcccchhHHHHHhhh---
Confidence 4889999999999999999999998653100010 1111222244444444422 111222211
Q ss_pred HHccCCHHHHHHHHhccCCCCchHHH-HHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 003439 289 YAKFGMMRHALRVFDQMMERDVVSWN-SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 357 (820)
Q Consensus 289 y~~~g~~~~A~~~f~~m~~~d~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 357 (820)
.-..+.+...++|-.-......+.+ .-+-.|......+-++.+++.+....-.++..-.+.++..|..
T Consensus 570 -vl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 570 -VLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred -hhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1234556666666551110111111 1234556677788888888888877666666666666666544
No 414
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=38.82 E-value=1.5e+02 Score=24.15 Aligned_cols=38 Identities=11% Similarity=0.080 Sum_probs=26.2
Q ss_pred hcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHH
Q 003439 495 KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 533 (820)
Q Consensus 495 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 533 (820)
..|+.+.|.+++..++ ++...|...+.++...|+.+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4567777777777777 6666777777777776665544
No 415
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=38.46 E-value=51 Score=33.61 Aligned_cols=40 Identities=28% Similarity=0.332 Sum_probs=32.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHH
Q 003439 212 WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 251 (820)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 251 (820)
||..|...++.|++++|+.+++|..+.|+.--..||...+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 7899999999999999999999999998775555554433
No 416
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=38.23 E-value=1.8e+02 Score=25.46 Aligned_cols=59 Identities=15% Similarity=0.279 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 003439 532 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 592 (820)
Q Consensus 532 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 592 (820)
+..+-+..+....+.|+......-+.||.+.+++..|.++|+.++.+.| +....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHH
Confidence 4445566666777899999999999999999999999999998876533 3333565554
No 417
>PRK10941 hypothetical protein; Provisional
Probab=38.12 E-value=1.4e+02 Score=30.38 Aligned_cols=67 Identities=6% Similarity=-0.093 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH
Q 003439 589 GCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 655 (820)
Q Consensus 589 ~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 655 (820)
+.+-..|.+.++++.|+...+.+ .+.|+ ..-|.--.-.|.+.|....|..-++..++..|+++.+-.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 34556677788888888887776 44554 445666666788888888888888888888887776443
No 418
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=37.77 E-value=5e+02 Score=27.16 Aligned_cols=120 Identities=13% Similarity=0.078 Sum_probs=77.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh------cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHH
Q 003439 529 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSH------SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 602 (820)
Q Consensus 529 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~------~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 602 (820)
-.++++.++++....+ .|........|.+|-. .-+|..-..+|+.+. .+.|++.+--.=.-++++.--.+
T Consensus 271 lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSPvV~LNRAVAla~~~Gp~ 346 (415)
T COG4941 271 LIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSPVVTLNRAVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCCeEeehHHHHHHHhhhHH
Confidence 3578888898888887 4888887777776532 346777778887776 34555432222222344444455
Q ss_pred HHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 003439 603 MAHNFIQNMPVRP----DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 603 eA~~~~~~m~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
.++.+++...-+| -...|..=...+.+.|..++|...|++++++.++...
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 6666666653332 1224444556678899999999999999998876443
No 419
>PHA03100 ankyrin repeat protein; Provisional
Probab=37.70 E-value=6.1e+02 Score=28.20 Aligned_cols=228 Identities=15% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHhhhCCCCCCccccHH-HHHhh-----cCCcchHHHHHHHHHhCCCCcHHHH--HHHHHHhh--cCCChhHHHH
Q 003439 130 VDCFYQFTLTSGLRPDFYTFPP-VLKAC-----RNLVDGKKIHCSVLKLGFEWDVFVA--ASLLHMYC--RFGLANVARK 199 (820)
Q Consensus 130 ~~l~~~~m~~~~~~p~~~t~~~-ll~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~--~~li~~y~--~~g~~~~A~~ 199 (820)
.++++. +...|..|+...... -.-.+ +....-.++...+++.|..++.... .+.+...+ +.|+.+-...
T Consensus 48 ~~ivk~-Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~ 126 (480)
T PHA03100 48 IDVVKI-LLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEY 126 (480)
T ss_pred HHHHHH-HHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHH
Q ss_pred HhccCCCCCcccHH--HHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHH--HhHHHhhhcCCChHHHHHHHHHHHHhCC
Q 003439 200 LFDDMPVRDSGSWN--AMISGYCQSGNAVEALDILDEMRLEGVSMDPITV--ASILPVCARSDNILSGLLIHLYIVKHGL 275 (820)
Q Consensus 200 ~f~~m~~~~~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 275 (820)
+++.-...+..... +.+...++.|. .-.++.+.+.+.|..++...- .+.+...+..| -.++.+.+++.|.
T Consensus 127 Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~----~~~iv~~Ll~~ga 200 (480)
T PHA03100 127 LLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKG----NIDVIKFLLDNGA 200 (480)
T ss_pred HHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhC----CHHHHHHHHHcCC
Q ss_pred CccHHHH--------HHHHHHHHccCC--HHHHHHHHhc---cCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCC
Q 003439 276 EFNLFVS--------NNLINMYAKFGM--MRHALRVFDQ---MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 342 (820)
Q Consensus 276 ~~~~~~~--------~~li~~y~~~g~--~~~A~~~f~~---m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 342 (820)
.++.... .+.+...+..|. .+-...+++. +..+|..-++.|..+..... .++++.+.+.|..
T Consensus 201 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~-----~~iv~~Ll~~gad 275 (480)
T PHA03100 201 DINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNN-----PEFVKYLLDLGAN 275 (480)
T ss_pred CccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCC
Q ss_pred CCcchHH--HHHHHHHhcCcchhhhhHHH
Q 003439 343 PDLLTLV--SLTSIVAQLNDCRNSRSVHG 369 (820)
Q Consensus 343 pd~~t~~--~ll~a~~~~~~~~~a~~i~~ 369 (820)
|+..... +.+......+..+....+++
T Consensus 276 ~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~ 304 (480)
T PHA03100 276 PNLVNKYGDTPLHIAILNNNKEIFKLLLN 304 (480)
T ss_pred CCccCCCCCcHHHHHHHhCCHHHHHHHHh
No 420
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.66 E-value=7.8e+02 Score=29.41 Aligned_cols=50 Identities=16% Similarity=0.160 Sum_probs=30.9
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhh
Q 003439 384 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 438 (820)
Q Consensus 384 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 438 (820)
..+........|+.+++..+-.-|. -|..++.-+.+.|.+++|++++..-
T Consensus 507 retv~~l~~~~~~~e~ll~fA~l~~-----d~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 507 RETVYQLLASHGRQEELLQFANLIK-----DYEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455555666666555443332 3566777788888888888877643
No 421
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=36.83 E-value=7.1e+02 Score=28.64 Aligned_cols=269 Identities=9% Similarity=0.042 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhCCCCcHHHHHHHHHHhhcCCChhHHHHHhccCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 003439 162 GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD-SGSWNAMISGYCQSGNAVEALDILDEMRLEGV 240 (820)
Q Consensus 162 ~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 240 (820)
.+++-......--.+.+..++.|+..+... +.++-.++++++.. . ...|..++++....|-.....-+.+.+....+
T Consensus 294 l~~L~~~~~~~~~~~~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 294 LKHLVQDIASDVQEPAAAKFLRLVRLLRTL-SEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhC-CHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Q ss_pred CC-ChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHH
Q 003439 241 SM-DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA 319 (820)
Q Consensus 241 ~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~ 319 (820)
.+ ........+-.....-..+....+++.+......+...++.+.+ .++.+|+..
T Consensus 372 ~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~------------------------l~~~~lv~~ 427 (574)
T smart00638 372 TPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESAL------------------------LAYGSLVRR 427 (574)
T ss_pred CHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHH------------------------HHHHHHHHH
Q ss_pred HHhCCCh------hhHHHHHHHHHHcCC-CCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHH
Q 003439 320 YEQSNDP------ITAHGFFTTMQQAGI-QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 392 (820)
Q Consensus 320 ~~~~g~~------~~A~~~~~~m~~~g~-~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~ 392 (820)
++..... ++....+.+...... .-|..--...|.++.+.|.......+...+. |....+..+....+.++.
T Consensus 428 ~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~--~~~~~~~~iR~~Av~Alr 505 (574)
T smart00638 428 YCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE--GAEPLSTFIRLAAILALR 505 (574)
T ss_pred HhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC--CCCCCCHHHHHHHHHHHH
Q ss_pred hc--CCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHh
Q 003439 393 KL--GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAY 458 (820)
Q Consensus 393 ~~--g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~ 458 (820)
+. ...+.+..++-.+-.........-|.+|...=+..--...++.|...-...|+...-+.+.+..
T Consensus 506 ~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 506 NLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMETKPSVALLQRIAELLNKEPNLQVASFVYSHI 573 (574)
T ss_pred HHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCcHHHHHHhHHhh
No 422
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=36.82 E-value=5.5e+02 Score=27.43 Aligned_cols=89 Identities=9% Similarity=0.074 Sum_probs=56.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhhCCCCC--hhHHHHHHHHHH-HcCCHHHHHHHHHhCCC--CCC------HHHHHHHH
Q 003439 556 LTACSHSGLVSEGQRYFHMMQEEFGIKPH--LKHYGCMVDLFG-RAGHLGMAHNFIQNMPV--RPD------ASIWGALL 624 (820)
Q Consensus 556 l~a~~~~g~~~~a~~~~~~m~~~~g~~p~--~~~~~~li~~~~-~~g~~~eA~~~~~~m~~--~p~------~~~~~~ll 624 (820)
+..+.+.|-+..|.++.+.+. .+.|+ +...-.+||.|+ |+++++--.++.+.... ..+ ...|+.-+
T Consensus 110 i~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aL 186 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIAL 186 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHH
Confidence 456778888999998887776 45564 455556677775 67777777777776422 111 12333333
Q ss_pred HHHHhcCCh---------------hHHHHHHHHHhccCC
Q 003439 625 GACRIHGNM---------------ELGAVASDRLFEVDS 648 (820)
Q Consensus 625 ~~~~~~g~~---------------~~a~~~~~~~~~~~p 648 (820)
. +...++. +.|...+++++..-|
T Consensus 187 A-~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 187 A-YFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred H-HHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 3 3334444 788888888888777
No 423
>PF15469 Sec5: Exocyst complex component Sec5
Probab=36.51 E-value=3.2e+02 Score=25.71 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=14.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHH
Q 003439 555 LLTACSHSGLVSEGQRYFHMMQE 577 (820)
Q Consensus 555 ll~a~~~~g~~~~a~~~~~~m~~ 577 (820)
-|.-|.+.|+++.+...|.....
T Consensus 92 ~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 92 NLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHH
Confidence 44556666777766666665554
No 424
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.45 E-value=6.5e+02 Score=27.81 Aligned_cols=146 Identities=15% Similarity=0.057 Sum_probs=87.8
Q ss_pred HHHHHHHHhcCCCCCc--hHH--------HHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcc-------cHhhHHH-Hh
Q 003439 397 INSACAVFEGLPVKDV--ISW--------NTLITGYAQNGLASEAIEVFQMMEECNEINPNQG-------TYVSILP-AY 458 (820)
Q Consensus 397 ~~~A~~~f~~~~~~~~--~~~--------~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-------t~~~ll~-a~ 458 (820)
-|+|....++.++.|. ... ..++..-.-.|++.+|++-...|.+-..-.|... ....++. .|
T Consensus 298 tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys 377 (629)
T KOG2300|consen 298 TDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYS 377 (629)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHh
Confidence 4556666666665552 111 2222333457999999999999876333334411 1222333 34
Q ss_pred hccCChhHHHHHHHHHHHhCCCCchhHH--HHHHHHHHhcCCHHHHHHHHhhCCCCCccccchH--------HHHH--Hh
Q 003439 459 SHVGALRQGIKIHARVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI--------ISCH--GI 526 (820)
Q Consensus 459 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~--~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l--------i~~~--~~ 526 (820)
...+..+.|..-|..+.+.--..|...+ ..+.-.|.+.|+.++-.++++.+..++..++.+- +.|+ ..
T Consensus 378 ~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~ 457 (629)
T KOG2300|consen 378 HSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFK 457 (629)
T ss_pred hhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 5678888888888777665333343322 3345568899999999999999988877665431 1111 24
Q ss_pred cCChHHHHHHHHHHHH
Q 003439 527 HGQGDKALNFFRQMLD 542 (820)
Q Consensus 527 ~g~~~~A~~l~~~m~~ 542 (820)
.+++.||...+++-++
T Consensus 458 qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 458 QNDLNEAKRFLRETLK 473 (629)
T ss_pred hccHHHHHHHHHHHHh
Confidence 5677777777766655
No 425
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=35.19 E-value=6.5e+02 Score=27.78 Aligned_cols=60 Identities=12% Similarity=0.130 Sum_probs=41.3
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCCCcCCc
Q 003439 625 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPG 687 (820)
Q Consensus 625 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~ 687 (820)
.++.+..++..+.+-.+.+....-+.+.+..+-++.+.-.|++..|.++.-. .|+.+.||
T Consensus 214 r~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~---sni~~~~g 273 (696)
T KOG2471|consen 214 RFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLV---SNIHKEAG 273 (696)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHh---cccccccC
Confidence 3445555666666666666666666777777889999999999999876543 34555554
No 426
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=34.91 E-value=1.4e+02 Score=26.59 Aligned_cols=31 Identities=16% Similarity=0.009 Sum_probs=26.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 003439 622 ALLGACRIHGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 622 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
-|.-++.+.++++.++++.+.+++.+|+|..
T Consensus 76 YLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 76 YLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 3556788999999999999999999997654
No 427
>PRK13342 recombination factor protein RarA; Reviewed
Probab=34.68 E-value=6.4e+02 Score=27.54 Aligned_cols=47 Identities=26% Similarity=0.323 Sum_probs=32.6
Q ss_pred cchHHHHHHh---cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 003439 517 WNAIISCHGI---HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 563 (820)
Q Consensus 517 ~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 563 (820)
+..+++++.+ .++++.|+..+.+|++.|..|..+.-..+..++...|
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 4445555554 4789999999999999998887665555555554444
No 428
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=34.24 E-value=3.2e+02 Score=26.05 Aligned_cols=49 Identities=8% Similarity=0.035 Sum_probs=24.4
Q ss_pred hcCCHHHHHHHHhhCC------CCCccccchHHH-HHHhcCC--hHHHHHHHHHHHHc
Q 003439 495 KCGRIDDAMSLFYQVP------RSSSVPWNAIIS-CHGIHGQ--GDKALNFFRQMLDE 543 (820)
Q Consensus 495 ~~g~~~~A~~~~~~~~------~~~~~~~~~li~-~~~~~g~--~~~A~~l~~~m~~~ 543 (820)
..|++++|.+-++++. ++-...|..+.. +++.++. +.+|..++.-....
T Consensus 41 H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 41 HRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 4455666655555443 122334555444 5565553 44565555555443
No 429
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=34.15 E-value=1.8e+02 Score=25.54 Aligned_cols=43 Identities=14% Similarity=0.219 Sum_probs=33.9
Q ss_pred HHHHHHHHHhc--cCCCCcchHHhHHHHhhhcCCcchHHHHHHHH
Q 003439 635 LGAVASDRLFE--VDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 677 (820)
Q Consensus 635 ~a~~~~~~~~~--~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 677 (820)
.+..+|+.+.. +.-.-+..|..-+..+...|++++|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 78888888765 55566778888999999999999999988753
No 430
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=33.82 E-value=2e+02 Score=23.34 Aligned_cols=67 Identities=12% Similarity=0.122 Sum_probs=43.3
Q ss_pred hHHHHHHHHHhCCCCcHHHHHHHHHHhhcCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHH
Q 003439 162 GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 230 (820)
Q Consensus 162 ~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 230 (820)
..+++..+.+.|+- +......+-..-...|+.+.|+++++.++ +..-.|...++++-+.|.-.-|.+
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhhc
Confidence 44566666666632 22222232222235688888999998888 888888888888888887665543
No 431
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.68 E-value=9.7e+02 Score=29.01 Aligned_cols=128 Identities=15% Similarity=0.112 Sum_probs=73.9
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHhhhCCCC-CCccccHHHHHhhcCCcchHHHHHHHHHhCCC--CcHHHHHHHHHHh
Q 003439 112 TWNSMISVYVRCGRLSEAVDCFYQFTLTSGLR-PDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE--WDVFVAASLLHMY 188 (820)
Q Consensus 112 ~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~~-p~~~t~~~ll~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~li~~y 188 (820)
-|..|+.-|...|..++|+++|.+ . ..+.. -|. +.. .+ -+.+.+.+.+.|-+ +=...|+..+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~-l-~d~~~~~d~-~~~---~~------~e~ii~YL~~l~~~~~~Li~~y~~wv--- 570 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRD-L-VDEDSDTDS-FQL---DG------LEKIIEYLKKLGAENLDLILEYADWV--- 570 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHH-H-hcccccccc-chh---hh------HHHHHHHHHHhcccchhHHHHHhhhh---
Confidence 388999999999999999999998 3 22221 111 000 00 23355555555533 2223333322
Q ss_pred hcCCChhHHHHHhccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhc
Q 003439 189 CRFGLANVARKLFDDMPV--RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 256 (820)
Q Consensus 189 ~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 256 (820)
-..+.+.+.++|-.-.. ....+-.. +-.|......+-++..++.+....-.++..-.+.++..|+.
T Consensus 571 -l~~~p~~gi~Ift~~~~~~~~sis~~~-Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 571 -LNKNPEAGIQIFTSEDKQEAESISRDD-VLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred -hccCchhheeeeeccChhhhccCCHHH-HHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 13556677777765111 11112222 33566777788888888888776666677767777666643
No 432
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=32.50 E-value=45 Score=29.43 Aligned_cols=34 Identities=32% Similarity=0.527 Sum_probs=25.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 003439 524 HGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 559 (820)
Q Consensus 524 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 559 (820)
....|.-.+|..+|++|++.|-+||. |+.|+.++
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34456667899999999999999985 55565544
No 433
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=32.24 E-value=57 Score=33.05 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=43.2
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHH
Q 003439 627 CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 677 (820)
Q Consensus 627 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 677 (820)
..+.|+.|.|..+|+.++.+.|+++....-++.......+.-+|...+-++
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 467899999999999999999999999888888777777777777776554
No 434
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=32.10 E-value=7e+02 Score=27.22 Aligned_cols=47 Identities=6% Similarity=-0.136 Sum_probs=26.0
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHh
Q 003439 276 EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ 322 (820)
Q Consensus 276 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~ 322 (820)
.++..+....+.++.+.+..+....+...+..++...-.+.+.++..
T Consensus 97 d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~ 143 (410)
T TIGR02270 97 AGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGA 143 (410)
T ss_pred CCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 34455666666666666666555555555555555444444444444
No 435
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=31.67 E-value=1.2e+02 Score=24.87 Aligned_cols=27 Identities=19% Similarity=0.105 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccC
Q 003439 621 GALLGACRIHGNMELGAVASDRLFEVD 647 (820)
Q Consensus 621 ~~ll~~~~~~g~~~~a~~~~~~~~~~~ 647 (820)
-.+.......|+.++|...+++++++-
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 344555677788888888888887643
No 436
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=31.59 E-value=1.8e+02 Score=27.46 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=23.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 003439 623 LLGACRIHGNMELGAVASDRLFEVDSENVGY 653 (820)
Q Consensus 623 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 653 (820)
.+..|.+.|.+++|.+++++.++ +|++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 44568888999999999998888 7765544
No 437
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.49 E-value=4.8e+02 Score=29.40 Aligned_cols=132 Identities=18% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHHhHHhhCCCC----------ChhHHHHHHHHHHHcCCHHHHHHHHHhC----------CCCC---
Q 003439 559 CSHSGLVSEGQRYFHMMQEEFGIKP----------HLKHYGCMVDLFGRAGHLGMAHNFIQNM----------PVRP--- 615 (820)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~g~~p----------~~~~~~~li~~~~~~g~~~eA~~~~~~m----------~~~p--- 615 (820)
+.+...++++.+.|......+...- .+.+.-.|.+++-.+|+.+-|.+++++. .+.|
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Q ss_pred ----------CHHHHHHH---HHHHHhcCChhHHHHHHHHHhccCCC-CcchHHhHHHHhh-hcCCcchHHHHHHHH-Hh
Q 003439 616 ----------DASIWGAL---LGACRIHGNMELGAVASDRLFEVDSE-NVGYYVLMSNIYA-NVGKWEGVDEVRSLA-RD 679 (820)
Q Consensus 616 ----------~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~-~~g~~~~A~~~~~~m-~~ 679 (820)
|...|.+| +....+.|-+..|.+..+-++.++|. |+-....+++.|+ ++.+++=-+++++.. ..
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q ss_pred CCCCcCCceeE
Q 003439 680 RGLKKTPGWSS 690 (820)
Q Consensus 680 ~~~~~~~~~s~ 690 (820)
..+...|.+.+
T Consensus 408 n~l~~~PN~~y 418 (665)
T KOG2422|consen 408 NKLSQLPNFGY 418 (665)
T ss_pred ccHhhcCCchH
No 438
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=31.02 E-value=17 Score=26.40 Aligned_cols=11 Identities=36% Similarity=0.945 Sum_probs=8.6
Q ss_pred cccccCCchhH
Q 003439 776 NLRVCGDCHNW 786 (820)
Q Consensus 776 n~r~c~dch~~ 786 (820)
-..+|+|||.-
T Consensus 19 miYiCgdC~~e 29 (62)
T KOG3507|consen 19 MIYICGDCGQE 29 (62)
T ss_pred EEEEecccccc
Confidence 35799999964
No 439
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=30.24 E-value=73 Score=31.04 Aligned_cols=56 Identities=11% Similarity=0.125 Sum_probs=50.1
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCC
Q 003439 627 CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 682 (820)
Q Consensus 627 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 682 (820)
....+|.+.+-+++.+++++-|+....|..++..-.++|+.+.|.+.+++..+...
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 34678899999999999999999999999999999999999999999988876543
No 440
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=29.86 E-value=9.3e+02 Score=27.94 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=27.1
Q ss_pred cCCHHHHHHHHhh----CCCC---CccccchHHH-----HHHhcCChHHHHHHHHHHHH
Q 003439 496 CGRIDDAMSLFYQ----VPRS---SSVPWNAIIS-----CHGIHGQGDKALNFFRQMLD 542 (820)
Q Consensus 496 ~g~~~~A~~~~~~----~~~~---~~~~~~~li~-----~~~~~g~~~~A~~l~~~m~~ 542 (820)
.|+..+..+.... ..+. ....|..+.. .|...|+.++|.....+...
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 4666664444433 1222 4455744433 46677888888888777654
No 441
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=29.75 E-value=5e+02 Score=24.78 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=39.0
Q ss_pred hHHHHhhccCChhHHHHHHHHHHHhCC--------------CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 003439 453 SILPAYSHVGALRQGIKIHARVIKNCL--------------CFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 510 (820)
Q Consensus 453 ~ll~a~~~~~~~~~a~~i~~~~~~~g~--------------~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 510 (820)
+++-.|-+.-++.+++++++.+.+..+ .+.-.+.|.-...+.++|.+|.|..++++-.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLrese 208 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRESE 208 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhccc
Confidence 455566667777777777776654322 2334456777788888888888888887543
No 442
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=29.61 E-value=3.4e+02 Score=23.82 Aligned_cols=42 Identities=7% Similarity=0.217 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHH
Q 003439 532 KALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFH 573 (820)
Q Consensus 532 ~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 573 (820)
.+.++|+.|...|+--... -|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5556666666655544433 34444555555566666655554
No 443
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=29.41 E-value=6.2e+02 Score=25.77 Aligned_cols=47 Identities=11% Similarity=-0.067 Sum_probs=27.1
Q ss_pred ChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcC---------------CcchHHHHHHHHHhCC
Q 003439 632 NMELGAVASDRLFEVDSENVGYYVLMSNIYANVG---------------KWEGVDEVRSLARDRG 681 (820)
Q Consensus 632 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g---------------~~~~A~~~~~~m~~~~ 681 (820)
|.++|...|+++-+... ......++ ++...| +...|...+......+
T Consensus 206 d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred CHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 66777777777776655 44444555 444444 4455555555555443
No 444
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=29.31 E-value=3.3e+02 Score=26.67 Aligned_cols=91 Identities=16% Similarity=0.207 Sum_probs=48.8
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCC---ChhHHHH--HHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRP---DHITFVS--LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 591 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~--ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l 591 (820)
.|.||--|..+..+.+|.+.|.. +.|+.| |..++.. -+......|++++|.+....+... -+.-|.+.+--|
T Consensus 29 ~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~L 105 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHL 105 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHHH
Confidence 45555555555555555555543 334554 2223322 344556778888888777655432 233343222222
Q ss_pred HH----HHHHcCCHHHHHHHHHh
Q 003439 592 VD----LFGRAGHLGMAHNFIQN 610 (820)
Q Consensus 592 i~----~~~~~g~~~eA~~~~~~ 610 (820)
.. =+.|.|..++|+++.+.
T Consensus 106 q~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 106 QQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Confidence 11 24578888888888865
No 445
>PRK12356 glutaminase; Reviewed
Probab=29.10 E-value=5.4e+02 Score=26.86 Aligned_cols=110 Identities=7% Similarity=0.046 Sum_probs=58.7
Q ss_pred HHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC-Ch-hHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 003439 500 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DH-ITFVSLLTACSHSGLVSEGQRYFHMMQE 577 (820)
Q Consensus 500 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 577 (820)
+.-.++++++...++..=..+...-...|+-..|+..| |++.|.-+ |. .+.......|+-....++.-.+...+.
T Consensus 140 ~~il~~~~~~ag~~l~~de~v~~SE~~t~~RNrAlA~~--lks~g~i~~d~~~~Ld~Yf~qCsi~vt~~dLA~~~a~LA- 216 (319)
T PRK12356 140 QRILDGQQRFAGRELALSDEVYQSEQTTNFHNRAIAWL--LYSYGRLYCDPMEACDVYTRQCSTLVTARDLATMGATLA- 216 (319)
T ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHhhhHHHHHHHHH--HHHCCCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHH-
Confidence 44445555554433333233333444455555555443 56666543 32 244455555665555555555544443
Q ss_pred hhCCCC-------ChhHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 003439 578 EFGIKP-------HLKHYGCMVDLFGRAGHLGMAHNFIQNMP 612 (820)
Q Consensus 578 ~~g~~p-------~~~~~~~li~~~~~~g~~~eA~~~~~~m~ 612 (820)
..|+.| +..+-..+......+|.+|.+-++.-+.+
T Consensus 217 n~G~~P~tg~~vl~~~~~r~v~s~M~TCGmYd~SG~fa~~VG 258 (319)
T PRK12356 217 AGGVNPLTGKRVVDADNVPYILAEMTMEGLYERSGDWAYTVG 258 (319)
T ss_pred cCCcCCCCCCeecCHHHHHHHHHHHHHcCCccchhhHHHHhC
Confidence 336666 23455556666777888888777776664
No 446
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=28.87 E-value=3.9e+02 Score=23.28 Aligned_cols=20 Identities=15% Similarity=0.104 Sum_probs=12.8
Q ss_pred HHHhhhcCCcchHHHHHHHH
Q 003439 658 SNIYANVGKWEGVDEVRSLA 677 (820)
Q Consensus 658 ~~~y~~~g~~~~A~~~~~~m 677 (820)
+-++...|+.++|...|+..
T Consensus 107 a~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 107 AVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHHH
Confidence 44566778888887777654
No 447
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=28.60 E-value=4.9e+02 Score=25.73 Aligned_cols=32 Identities=16% Similarity=0.349 Sum_probs=19.0
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 549 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 549 (820)
...|+.. +..+++++|.+.++++-+.|+.|..
T Consensus 242 v~~ml~~-~~~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 242 VKKMLQA-CLKRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred HHHHHHH-HHhccHHHHHHHHHHHHHcCCCHHH
Confidence 3344433 3345677777777777777766644
No 448
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.47 E-value=11 Score=38.62 Aligned_cols=100 Identities=13% Similarity=0.093 Sum_probs=69.4
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCCCcCCceeEEEECCEEEEEEeCCCCCc
Q 003439 629 IHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHP 708 (820)
Q Consensus 629 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~ 708 (820)
..|+++.|++.+-.+++++|.....|.--+.++.+.+++..|.+-.....+.+.....++-| .+..|.
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykf---rg~A~r--------- 193 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKF---RGYAER--------- 193 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccch---hhHHHH---------
Confidence 46789999999999999999999999999999999999999999888887765544444444 111111
Q ss_pred ccHHHHHHHHHHHHHHHhCCCccCCCcccccCc
Q 003439 709 KYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVE 741 (820)
Q Consensus 709 ~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~ 741 (820)
....+.+....+..--+.+|-++.+-++..|.
T Consensus 194 -llg~~e~aa~dl~~a~kld~dE~~~a~lKeV~ 225 (377)
T KOG1308|consen 194 -LLGNWEEAAHDLALACKLDYDEANSATLKEVF 225 (377)
T ss_pred -HhhchHHHHHHHHHHHhccccHHHHHHHHHhc
Confidence 01112233344444556677777766665443
No 449
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=27.97 E-value=1.1e+02 Score=33.28 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=30.6
Q ss_pred HHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003439 606 NFIQNMPVRPDAS--IWGALLGACRIHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 606 ~~~~~m~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 649 (820)
.+|...++.|... ++++-++.+.+++|+..|-...++++++.|.
T Consensus 287 AYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 287 AYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp HHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 3454555666533 6777778888999999999999999999984
No 450
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=27.84 E-value=35 Score=18.92 Aligned_cols=10 Identities=30% Similarity=0.414 Sum_probs=6.7
Q ss_pred CchhHHHHHh
Q 003439 782 DCHNWTKFIS 791 (820)
Q Consensus 782 dch~~~k~~s 791 (820)
.-|+++|+||
T Consensus 11 glhe~ikli~ 20 (23)
T PF08225_consen 11 GLHEVIKLIN 20 (23)
T ss_pred HHHHHHHHHh
Confidence 3577777776
No 451
>PF13934 ELYS: Nuclear pore complex assembly
Probab=27.52 E-value=6.1e+02 Score=25.01 Aligned_cols=122 Identities=15% Similarity=0.238 Sum_probs=64.7
Q ss_pred HHHHHHHH--hcCCHHHHHHHHhhCCCCCccccc--hHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 003439 487 TCLVDMYG--KCGRIDDAMSLFYQVPRSSSVPWN--AIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 562 (820)
Q Consensus 487 ~~li~~y~--~~g~~~~A~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 562 (820)
..+++++- -.+++++|.+.+ ..+.+.+|. -++.++...|+.+.|+.+++.+.-..- +......++.+ ...
T Consensus 80 ~~~~~g~W~LD~~~~~~A~~~L---~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~-La~ 153 (226)
T PF13934_consen 80 IKFIQGFWLLDHGDFEEALELL---SHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA-LAN 153 (226)
T ss_pred HHHHHHHHHhChHhHHHHHHHh---CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-HHc
Confidence 33444432 345667776666 333333332 377778878888888888876433211 11222333333 556
Q ss_pred CCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHH
Q 003439 563 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS 618 (820)
Q Consensus 563 g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~ 618 (820)
+.+.||..+-+...+. -....+..++........-....+.+-.+|+.+...
T Consensus 154 ~~v~EAf~~~R~~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE 205 (226)
T PF13934_consen 154 GLVTEAFSFQRSYPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEE 205 (226)
T ss_pred CCHHHHHHHHHhCchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHH
Confidence 8888888876554421 113456666666554332233333444556555443
No 452
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=27.42 E-value=7.1e+02 Score=26.78 Aligned_cols=10 Identities=10% Similarity=0.501 Sum_probs=7.4
Q ss_pred hcCCcchHHH
Q 003439 663 NVGKWEGVDE 672 (820)
Q Consensus 663 ~~g~~~~A~~ 672 (820)
..|++++|.-
T Consensus 258 ~~~ry~da~~ 267 (380)
T TIGR02710 258 TQGRYDDAAA 267 (380)
T ss_pred HccCHHHHHH
Confidence 6688888763
No 453
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=27.20 E-value=6.6e+02 Score=25.36 Aligned_cols=32 Identities=16% Similarity=-0.086 Sum_probs=22.8
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhcCCCC
Q 003439 379 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 410 (820)
Q Consensus 379 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~ 410 (820)
-|+.....+...|.+.|++.+|+..|-.-..+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~ 119 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDP 119 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCCh
Confidence 46778888899999999999999888654433
No 454
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=27.05 E-value=86 Score=23.54 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=21.2
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 003439 210 GSWNAMISGYCQSGNAVEALDILDEMRL 237 (820)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 237 (820)
.-.-.+|.||.+.|++++|.+..+++..
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344678899999999999998888754
No 455
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=26.73 E-value=6.6e+02 Score=25.86 Aligned_cols=54 Identities=9% Similarity=0.125 Sum_probs=36.0
Q ss_pred hHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhh
Q 003439 385 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 440 (820)
Q Consensus 385 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 440 (820)
-.++..+.+.+++......+..+. .+..-...+..+...|++..|+++..+..+
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345555666666555555555542 233445667788889999999999988876
No 456
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=26.71 E-value=1.3e+02 Score=22.63 Aligned_cols=25 Identities=12% Similarity=0.276 Sum_probs=13.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhH
Q 003439 552 FVSLLTACSHSGLVSEGQRYFHMMQ 576 (820)
Q Consensus 552 ~~~ll~a~~~~g~~~~a~~~~~~m~ 576 (820)
-..++.++...|++++|.++.+.+.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445556666666666666665554
No 457
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=26.57 E-value=1.7e+02 Score=20.62 Aligned_cols=34 Identities=12% Similarity=0.094 Sum_probs=24.7
Q ss_pred HHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHH
Q 003439 320 YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 353 (820)
Q Consensus 320 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 353 (820)
..+.|...++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3467777788888888888887777766665554
No 458
>PF14376 Haem_bd: Haem-binding domain
Probab=26.45 E-value=23 Score=31.77 Aligned_cols=8 Identities=50% Similarity=1.244 Sum_probs=7.0
Q ss_pred cccCCchh
Q 003439 778 RVCGDCHN 785 (820)
Q Consensus 778 r~c~dch~ 785 (820)
+-|.||||
T Consensus 42 ~~CydCHS 49 (137)
T PF14376_consen 42 NSCYDCHS 49 (137)
T ss_pred ccccccCC
Confidence 57999996
No 459
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=26.13 E-value=91 Score=31.89 Aligned_cols=38 Identities=29% Similarity=0.350 Sum_probs=28.8
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 554 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 554 (820)
||..|..-.+.||+++|+.+++|..+.|+.--..||..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 67778888888888888888888888886654555543
No 460
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=25.97 E-value=6e+02 Score=25.13 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=20.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCC-CC
Q 003439 524 HGIHGQGDKALNFFRQMLDEGVR-PD 548 (820)
Q Consensus 524 ~~~~g~~~~A~~l~~~m~~~g~~-p~ 548 (820)
....|+++.|+++.+-+++.|.. |+
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd 118 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPD 118 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCc
Confidence 35679999999999999998853 44
No 461
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=25.88 E-value=3.4e+02 Score=27.48 Aligned_cols=60 Identities=22% Similarity=0.133 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 621 GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 621 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+.+=+++.+.++++.|....++.+.++|+++.-..--+-+|.+.|-..-|.+-.+...+.
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 344456778889999999999999999998887888888899999998888877765544
No 462
>COG3043 NapB Nitrate reductase cytochrome c-type subunit [Energy production and conversion]
Probab=25.47 E-value=48 Score=29.43 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=19.7
Q ss_pred eEEeecccccCCchhHHHHHhhhhCce
Q 003439 771 IQIFKNLRVCGDCHNWTKFISQITERE 797 (820)
Q Consensus 771 ~~~~kn~r~c~dch~~~k~~s~~~~r~ 797 (820)
++|.||.-.|--||+.- .|+.+|-.
T Consensus 80 Yqvtkn~N~CLsCH~~e--~s~~tGAt 104 (155)
T COG3043 80 YQVTKNTNRCLSCHSVE--NSRTTGAT 104 (155)
T ss_pred ceeecccchhhhccCHH--HHhhcCCC
Confidence 79999999999999864 45555543
No 463
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=25.29 E-value=2.6e+02 Score=32.29 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=24.5
Q ss_pred cccCCchhHHHHHhhhhCceEEEecCCc
Q 003439 778 RVCGDCHNWTKFISQITEREIIVRDSNR 805 (820)
Q Consensus 778 r~c~dch~~~k~~s~~~~r~i~~rd~~~ 805 (820)
..|..-|+|.--.|+|.|--+.-||.++
T Consensus 489 ~~~k~ih~w~F~assIk~Vs~sKrddRc 516 (1226)
T KOG4279|consen 489 QKLKGIHRWHFAASSIKGVSESKRDDRC 516 (1226)
T ss_pred hhhcCceeeeeehhceecccccccccce
Confidence 3588899999999999999999999776
No 464
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=24.56 E-value=5e+02 Score=29.87 Aligned_cols=56 Identities=9% Similarity=-0.035 Sum_probs=21.0
Q ss_pred ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 003439 449 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 506 (820)
Q Consensus 449 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 506 (820)
....-++..|.+.|-.+.+..+.+.+-..-.. ..-|..-+..+.++|+.+....+-
T Consensus 406 ~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i~ 461 (566)
T PF07575_consen 406 DDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVTRIA 461 (566)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHHH
Confidence 34445556666666666666665544332211 123444445556666655544433
No 465
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=24.07 E-value=8.6e+02 Score=25.62 Aligned_cols=86 Identities=19% Similarity=0.185 Sum_probs=43.0
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 003439 489 LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG 568 (820)
Q Consensus 489 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 568 (820)
+.|..++.++-+.+..+-+.+..--..+..++..++....-.++..+.+.+..+. .||..+...++.|.+........
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~--~~d~~~~~a~lRAls~~~~~~~~ 249 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQ--APDLELLSALLRALSSAPASDLV 249 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHcCCCchhHH
Confidence 4455555555554444444444333333444444444444333333333333332 27777777777777776665555
Q ss_pred HHHHHHhH
Q 003439 569 QRYFHMMQ 576 (820)
Q Consensus 569 ~~~~~~m~ 576 (820)
...+..+.
T Consensus 250 ~~~i~~~L 257 (340)
T PF12069_consen 250 AILIDALL 257 (340)
T ss_pred HHHHHHHh
Confidence 55444444
No 466
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=24.07 E-value=1.8e+02 Score=25.53 Aligned_cols=69 Identities=16% Similarity=0.329 Sum_probs=43.6
Q ss_pred HHHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHHhc--cCCCCcchHHhHHHHhhhcCCcchHHHHHH
Q 003439 602 GMAHNFIQNM-PVRPDAS---IWGALLGACRIHGNMELGAVASDRLFE--VDSENVGYYVLMSNIYANVGKWEGVDEVRS 675 (820)
Q Consensus 602 ~eA~~~~~~m-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 675 (820)
+++.+.|... ..+.|+- +|-.++..| +....+|+.+.. +.-.-+..|...+..+...|++.+|.++++
T Consensus 50 erc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 50 ERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444444444 2333432 555555443 336677777765 444566778888889999999999998886
Q ss_pred H
Q 003439 676 L 676 (820)
Q Consensus 676 ~ 676 (820)
.
T Consensus 124 ~ 124 (125)
T smart00777 124 L 124 (125)
T ss_pred c
Confidence 3
No 467
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=23.90 E-value=1.7e+02 Score=29.70 Aligned_cols=57 Identities=12% Similarity=0.215 Sum_probs=41.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhccCCC---CchHHHHHHHHHHhCCChhhHHHHHHHHH
Q 003439 281 VSNNLINMYAKFGMMRHALRVFDQMMER---DVVSWNSIIAAYEQSNDPITAHGFFTTMQ 337 (820)
Q Consensus 281 ~~~~li~~y~~~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 337 (820)
+.+.....|..+|.+.+|.++-+....- +...|-.++..++..|+--.|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3445566788888888888888777653 45567788888888888777777777774
No 468
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=23.74 E-value=2.6e+02 Score=24.30 Aligned_cols=92 Identities=20% Similarity=0.194 Sum_probs=52.9
Q ss_pred HhCCCchHHHHHHHHHhhhCCCCCCccccHHHHHhhcCCcchHHHHHHHHHhCCCCcHHHHHHHHHHhhcCCChhHHH--
Q 003439 121 VRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVAR-- 198 (820)
Q Consensus 121 ~~~g~~~~A~~l~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-- 198 (820)
.+.|.+++|..-+.+.|.-+...|...+|-.- ..|.+.+..|-.++.+.|++++++
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~----------------------GFDA~chA~Ls~A~~~Lgry~e~L~s 77 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHD----------------------GFDAFCHAGLSGALAGLGRYDECLQS 77 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HH----------------------HHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccc----------------------cHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 35677788877777778777766766655321 236677888888899999887654
Q ss_pred -----HHhccCCC---CCcccHHHHH----HHHHhCCChhHHHHHHHH
Q 003439 199 -----KLFDDMPV---RDSGSWNAMI----SGYCQSGNAVEALDILDE 234 (820)
Q Consensus 199 -----~~f~~m~~---~~~~~~~~li----~~~~~~g~~~~A~~l~~~ 234 (820)
..|++--+ ..-..|-+.+ .++-..|+.++|+.-|+.
T Consensus 78 A~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 78 ADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 44544322 2233454443 345566777877777654
No 469
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=23.51 E-value=3.9e+02 Score=23.51 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHH
Q 003439 227 EALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 272 (820)
Q Consensus 227 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 272 (820)
+..+-++.+..-++.|++......|+||.+.+++..|..+++-+..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4445555666667888888888888888888888888888877653
No 470
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=23.47 E-value=31 Score=28.90 Aligned_cols=31 Identities=26% Similarity=0.558 Sum_probs=20.1
Q ss_pred ecccccCCc-hhHHHHHhhhhCceEEEecCCc
Q 003439 775 KNLRVCGDC-HNWTKFISQITEREIIVRDSNR 805 (820)
Q Consensus 775 kn~r~c~dc-h~~~k~~s~~~~r~i~~rd~~~ 805 (820)
-++-+|.+| |+|.+--.....-..++||+|.
T Consensus 17 g~~~iCpeC~~EW~~~~~~~~~~~~~~kDsnG 48 (109)
T TIGR00686 17 GTQLICPSCLYEWNENEVNDDDDELIVKDCNG 48 (109)
T ss_pred CCeeECccccccccccccccccCCceEEcCCC
Confidence 467899999 7887653222222257899875
No 471
>COG5431 Uncharacterized metal-binding protein [Function unknown]
Probab=23.44 E-value=24 Score=29.02 Aligned_cols=12 Identities=42% Similarity=1.168 Sum_probs=9.4
Q ss_pred cccCCcCCCCCC
Q 003439 808 HFKDGICSCGDY 819 (820)
Q Consensus 808 ~f~~g~csc~~~ 819 (820)
..+.|.|||.||
T Consensus 46 Il~~gfCSCp~~ 57 (117)
T COG5431 46 ILEGGFCSCPDF 57 (117)
T ss_pred EEEcCcccCHHH
Confidence 356789999876
No 472
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=23.31 E-value=1.1e+02 Score=27.22 Aligned_cols=32 Identities=22% Similarity=0.197 Sum_probs=24.3
Q ss_pred hCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 003439 322 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 355 (820)
Q Consensus 322 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 355 (820)
..|.-..|-.+|++|++.|-.||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346777899999999999999985 45555443
No 473
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=23.23 E-value=3.8e+02 Score=30.09 Aligned_cols=57 Identities=11% Similarity=0.084 Sum_probs=38.9
Q ss_pred HHHHHHHHccCCHHHHHHHHhccCCCC--c---hHHHHHHHHHHhCCChhhHHHHHHHHHHc
Q 003439 283 NNLINMYAKFGMMRHALRVFDQMMERD--V---VSWNSIIAAYEQSNDPITAHGFFTTMQQA 339 (820)
Q Consensus 283 ~~li~~y~~~g~~~~A~~~f~~m~~~d--~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 339 (820)
..|+.-|.+.+++++|..++..|.-.. . .+.+.+.+.+.+..--.+....++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 357778999999999999999986532 2 23455556666665555666666665544
No 474
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=22.27 E-value=2.6e+02 Score=29.06 Aligned_cols=85 Identities=9% Similarity=0.051 Sum_probs=58.2
Q ss_pred HHHHHHcCCHHHHHHHHHhC-C---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcC
Q 003439 592 VDLFGRAGHLGMAHNFIQNM-P---VRPD--ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG 665 (820)
Q Consensus 592 i~~~~~~g~~~eA~~~~~~m-~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 665 (820)
.+-|.+..++..|...|.+- . -.|| .+.|+.=..+-.-.||+..++.-..+++.++|.+...|..=+.++....
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELE 167 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH
Confidence 34566677777777777654 1 1233 4466665556666788888888888888888888888887777777777
Q ss_pred CcchHHHHHHH
Q 003439 666 KWEGVDEVRSL 676 (820)
Q Consensus 666 ~~~~A~~~~~~ 676 (820)
++++|....+.
T Consensus 168 ~~~~a~nw~ee 178 (390)
T KOG0551|consen 168 RFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHhh
Confidence 76666555443
No 475
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=22.25 E-value=8.2e+02 Score=24.70 Aligned_cols=81 Identities=11% Similarity=0.060 Sum_probs=39.0
Q ss_pred HHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCC-----CcccHhhHHHHhhccCChh
Q 003439 391 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-----NQGTYVSILPAYSHVGALR 465 (820)
Q Consensus 391 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-----d~~t~~~ll~a~~~~~~~~ 465 (820)
+.|.-+...-..+|+....| ..++.-+.+.|+.+.|-.++--+....+... +.....-++......++++
T Consensus 163 C~RKtE~~~W~~LF~~lg~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~ 237 (258)
T PF07064_consen 163 CARKTEVRYWPYLFDYLGSP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWD 237 (258)
T ss_pred HHHhhHHHHHHHHHHhcCCH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHH
Confidence 33333344444455544322 2455666667777777666655544111111 1222233445555556666
Q ss_pred HHHHHHHHHHH
Q 003439 466 QGIKIHARVIK 476 (820)
Q Consensus 466 ~a~~i~~~~~~ 476 (820)
.+.++.+.+..
T Consensus 238 Lc~eL~RFL~~ 248 (258)
T PF07064_consen 238 LCFELVRFLKA 248 (258)
T ss_pred HHHHHHHHHHH
Confidence 66655555544
No 476
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=21.87 E-value=1.8e+02 Score=25.89 Aligned_cols=45 Identities=24% Similarity=0.558 Sum_probs=31.0
Q ss_pred HHHHhhhccCCCCC----ceEEeecccccCCchhHHHHHhhhhCceEEEec
Q 003439 756 LAIAFGIISSPPKS----PIQIFKNLRVCGDCHNWTKFISQITEREIIVRD 802 (820)
Q Consensus 756 la~~~~~~~~~~~~----~~~~~kn~r~c~dch~~~k~~s~~~~r~i~~rd 802 (820)
...+++|+.|.++. .+.+.|+ .-|+-||.|+|++- .-|=+|-+-+
T Consensus 9 ~l~a~~l~~~~~~~a~~~~~~vyks-PnCGCC~~w~~~mk-~~Gf~Vk~~~ 57 (149)
T COG3019 9 SLAALGLGSTGPAQAQATEMVVYKS-PNCGCCDEWAQHMK-ANGFEVKVVE 57 (149)
T ss_pred HHHHHHhhcccchhcceeeEEEEeC-CCCccHHHHHHHHH-hCCcEEEEee
Confidence 44566677766643 4566666 57999999999987 6666665444
No 477
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=21.75 E-value=4.9e+02 Score=21.96 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=14.1
Q ss_pred HHHHHHHHcCChHHHHHHHHhhhh
Q 003439 417 TLITGYAQNGLASEAIEVFQMMEE 440 (820)
Q Consensus 417 ~li~~~~~~g~~~~A~~l~~~m~~ 440 (820)
.++..|...++.++|..-+.++..
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~~ 30 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELKL 30 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhCC
Confidence 345556666666666666665543
No 478
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=21.28 E-value=2.2e+02 Score=22.96 Aligned_cols=62 Identities=19% Similarity=0.215 Sum_probs=41.1
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHhhcCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHH
Q 003439 163 KKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEA 228 (820)
Q Consensus 163 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 228 (820)
..+...+++.|+- +....-...+...+.+.|.++++.++.+...+|.+...++-+.|...-|
T Consensus 19 ~~v~~~L~~~~Vl----t~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVF----TPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCC----CHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3455666666532 2222333344556788888898888888888888888888877765444
No 479
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=20.77 E-value=89 Score=29.71 Aligned_cols=12 Identities=42% Similarity=0.880 Sum_probs=9.4
Q ss_pred ecccccCCchhH
Q 003439 775 KNLRVCGDCHNW 786 (820)
Q Consensus 775 kn~r~c~dch~~ 786 (820)
.|+..|.-||.-
T Consensus 179 dnlk~Cn~Ch~L 190 (235)
T KOG4718|consen 179 DNLKNCNLCHCL 190 (235)
T ss_pred HHHHHHhHhHHH
Confidence 388889999864
No 480
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=20.72 E-value=2.2e+02 Score=26.52 Aligned_cols=61 Identities=11% Similarity=0.076 Sum_probs=33.8
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHH
Q 003439 540 MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 602 (820)
Q Consensus 540 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 602 (820)
+.+.|+++...-. .++......+..-.|.++++.+.+. +...+..+..--++.+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEE
Confidence 3445666554433 3334444444555677777777655 44455444444457777777665
No 481
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=20.69 E-value=8.3e+02 Score=25.22 Aligned_cols=19 Identities=11% Similarity=0.235 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHhCCChhhH
Q 003439 311 VSWNSIIAAYEQSNDPITA 329 (820)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A 329 (820)
..|..|+.+++..|+.+-.
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 3455555555555554433
No 482
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=20.56 E-value=4.7e+02 Score=24.38 Aligned_cols=55 Identities=11% Similarity=0.054 Sum_probs=38.0
Q ss_pred CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcch
Q 003439 308 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 362 (820)
Q Consensus 308 ~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 362 (820)
+....-..++..+...+..-.|.++++++.+.+..++..|.-..|..+...|-+.
T Consensus 23 R~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 23 RLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 3344444555666666667788888888888887778887777777777766443
No 483
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=20.52 E-value=1.4e+03 Score=26.57 Aligned_cols=271 Identities=9% Similarity=-0.004 Sum_probs=0.0
Q ss_pred hHHHHHHHHHh------CCCCcHHHHHHHHHHhhcCCChhHHHHHhccCCCC--CcccHHHHHHHHHhCCChhHHHHHHH
Q 003439 162 GKKIHCSVLKL------GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVR--DSGSWNAMISGYCQSGNAVEALDILD 233 (820)
Q Consensus 162 ~~~~~~~~~~~------g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~~ 233 (820)
..++...+.+. .+..+....-..+--..+.=+.++-.++++++... ....|+.+++++...|-.+...-+.+
T Consensus 323 ~~~l~~~l~~~~~~~~~~~~~~~~~~f~~Lv~~lr~l~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~~ 402 (618)
T PF01347_consen 323 LKELLKELADLLEEPEDPVSKETLSKFSRLVRLLRTLSYEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIKD 402 (618)
T ss_dssp --HHHHHHHHHHHH-SSS--TTHHHHHHHHHHHHTTS-HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHHH
Q ss_pred HHHHCCCCCChHHHHhHHHhhhc-CCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchH
Q 003439 234 EMRLEGVSMDPITVASILPVCAR-SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS 312 (820)
Q Consensus 234 ~m~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~ 312 (820)
.+....+.+....-....-.... .-..+....+++.+.......+..+..+.+ .+
T Consensus 403 ~I~~~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~------------------------L~ 458 (618)
T PF01347_consen 403 LIKSKKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETAL------------------------LS 458 (618)
T ss_dssp HHHTT-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHH------------------------HH
T ss_pred HHHcCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHH------------------------HH
Q ss_pred HHHHHHHHHhC------------CChhhHHHHHHHHHHcCCCC-CcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCc
Q 003439 313 WNSIIAAYEQS------------NDPITAHGFFTTMQQAGIQP-DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME 379 (820)
Q Consensus 313 ~~~li~~~~~~------------g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 379 (820)
+..|+.-++.. --.++..+.+.........- |...-...|.|+.+.|.......+...+.... ..
T Consensus 459 ~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~--~~ 536 (618)
T PF01347_consen 459 LGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKE--EV 536 (618)
T ss_dssp HHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS---S
T ss_pred HHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhcc--cc
Q ss_pred chhHHhHHHHHHH--hcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHH
Q 003439 380 DVIIGNAVVDMYA--KLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 457 (820)
Q Consensus 380 ~~~~~~~li~~y~--~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a 457 (820)
+..+..+.|.++. ..-..+.+..++-.+-.........-|.+|...=+..--..+++.|...-...|+....+.+.+.
T Consensus 537 ~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~~~~l~~i~~~l~~E~~~QV~sfv~S~ 616 (618)
T PF01347_consen 537 PHFIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVRIAAYLILMRCNPSPSVLQRIAQSLWNEPSNQVASFVYSH 616 (618)
T ss_dssp -HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT---HHHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHHHhhCchHHHHHHHHHh
Q ss_pred h
Q 003439 458 Y 458 (820)
Q Consensus 458 ~ 458 (820)
.
T Consensus 617 L 617 (618)
T PF01347_consen 617 L 617 (618)
T ss_dssp H
T ss_pred c
No 484
>PF01147 Crust_neurohorm: Crustacean CHH/MIH/GIH neurohormone family; InterPro: IPR001166 Arthropod express a family of neuropeptides [] which so far consist of the following types of neurohormones: Crustacean hyperglycemic hormone (CHH). CHH is primarily involved in blood sugar regulation, but also plays a role in the control of molting and reproduction. Molt-inhibiting hormone (MIH). MIH inhibits Y-organs where molting hormone (ecdysteroid) is secreted. A molting cycle is initiated when MIH secretion diminishes or stops. Gonad-inhibiting hormone (GIH), also known as vitellogenesis-inhibiting hormone (VIH) because of its role in inhibiting vitellogenesis in female animals. Mandibular organ-inhibiting hormone (MOIH). MOIH represses the synthesis of methyl farnesoate, the precursor of insect juvenile hormone III in the mandibular organ. Ion transport peptide (ITP) from locust. ITP stimulates salt and water reabsorption and inhibits acid secretion in the ileum of the locust. Caenorhabditis elegans hypothetical protein ZC168.2. These neurohormones are peptides of 70 to 80 residues which are processed from larger size precursors. They contain six conserved cysteines that are involved in disulphide bonds, as shown in the following schematic representation. ; GO: 0005184 neuropeptide hormone activity, 0005576 extracellular region; PDB: 1J0T_A.
Probab=20.18 E-value=22 Score=27.67 Aligned_cols=14 Identities=50% Similarity=0.797 Sum_probs=10.7
Q ss_pred ecccccCCchhHHH
Q 003439 775 KNLRVCGDCHNWTK 788 (820)
Q Consensus 775 kn~r~c~dch~~~k 788 (820)
|--|||.|||+...
T Consensus 18 kldrVC~DCyNl~R 31 (73)
T PF01147_consen 18 KLDRVCDDCYNLFR 31 (73)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 34589999999753
Done!